[Owl-devel] Residue Interaction Graph generation
Jose M. Duarte
jose.m.duarte at gmail.com
Tue Mar 16 11:52:09 EDT 2010
[I'm resending this that I posted earlier to Dan, so that it gets archived.
It might be helpful to someone]
You can check out the script make-owl.sh with:
svn export svn://bioinformatics.org/svnroot/owl/trunk/scripts/make-owl.sh
Then run it in a temp dir:
./make-owl.sh svn://bioinformatics.org/svnroot/owl/trunk .
that should give you one jar file trunk.jar
after that get all the jar dependencies:
svn export svn://bioinformatics.org/svnroot/owl/trunk/jars
And this script should run then the genGraph program:
for jarfile in $jarfiles
java genGraph $@
On 24 February 2010 12:34, Dan Bolser <dan.bolser at gmail.com> wrote:
> On 24 February 2010 11:30, Filippis, Ioannis <i.filippis at imperial.ac.uk>
> > Have a look at bioinformatics.org / Jose's mail about it.
> > I will try to find an easy example how to generate graphs based on it
> Cheers Ioannis, just catching up.
> All the best,
> > Ioannis
> > ________________________________________
> > From: Dan Bolser [dan.bolser at gmail.com]
> > Sent: 24 February 2010 11:28
> > To: Filippis, Ioannis
> > Subject: Re: Random question about res-res contacts
> > On 24 February 2010 11:22, Filippis, Ioannis <i.filippis at imperial.ac.uk>
> >> With graph generation code you mean creating a RIG or calculating graph
> properties? The first is in aglappe (now open-source) and the second is in
> one of the svn repositories in black. I can give you the second one if you
> want it.
> > I'm after the former. Where can I get it?
> > Cheers,
> > Dan.
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