[Proteopedia] changes

[Jaime Prilusky]

Dear Proteopedians,

We implemented several changes on SAT. Please report bugs and send suggestions for changes and improvements.

Seqtool: displays the sequence of the structure in the JSmol applet. It appears on seeded pages, and users may insert it on their own pages as described at https://proteopedia.org/w/Seqtool .

Color scale reference:  SAT inserts the color reference on new scenes. We could make optional to insert the scale. https://proteopedia.org/w/User:Jaime_Prilusky/Test/alphaFold

Color by pLDDT: The [colors] tab on SAT offers the option to color by pLDDT on uploaded structures generated by AlphaFold, RoseTTAfold and ESMfold. Try these available uploaded structures:
AlphaFold_AF-L8XZM1-F1-model_v4.pdb
ESM_1EZG_Antifreeze_protein.pdb
RTF_1MW5_1_pLDDT.pdb

Predict structure from sequence: A new area on SAT's [load molecule] receives a raw protein sequence, sends it to ESMfold and uploads to Proteopedia the resulting predicted structure. Also, the structure gets loaded on SAT, ready for preparing a scene.

Angel and Jaim
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