Basic Information | |||
Gene ID | 100004956 | ||
Gene Name | cdx1b | ||
Full Name | Caudal type homeodomain protein | ||
Organism | Danio rerio [7955] |
Cross Reference | |||
UniProt | A5PLE8 | UniGene | Dr.111219 |
PDB | NULL | OMIM | NULL |
KEGG | dre:100004956 | UCSC | NULL |
Protein Interactions | |
DIP | NULL |
IntAct | NULL |
MINT | NULL |
STRING | 7955.ENSDARP00000076430 |
Ensembl/RefSeq | Transcript ID | Protein ID | Gene ID |
ENSEMBL | |||
REFSEQ |
InterPro Annotation | |||||||
Protein | Program | Term | IPRS | Start | End | Score | Description |
NP_001092232 | Gene3D | G3DSA:1.10.10.60 | IPR009057 | 135 | 206 | 3.20e-26 | Homeodomain-like |
NP_001092232 | Pfam | PF00046 | IPR001356 | 148 | 203 | 3.00e-20 | Homeobox domain |
NP_001092232 | Pfam | PF04731 | IPR006820 | 13 | 140 | 4.00e-45 | Caudal-like activation domain |
NP_001092232 | PRINTS | PR00024 | IPR020479 | 168 | 179 | 1.80e-06 | Homeodomain, metazoa |
NP_001092232 | PRINTS | PR00024 | IPR020479 | 183 | 193 | 1.80e-06 | Homeodomain, metazoa |
NP_001092232 | PRINTS | PR00024 | IPR020479 | 193 | 202 | 1.80e-06 | Homeodomain, metazoa |
NP_001092232 | PRINTS | PR00031 | IPR000047 | 175 | 184 | 2.50e-05 | Helix-turn-helix motif |
NP_001092232 | PRINTS | PR00031 | IPR000047 | 184 | 200 | 2.50e-05 | Helix-turn-helix motif |
NP_001092232 | ProSitePatterns | PS00027 | IPR017970 | 179 | 202 | - | Homeobox, conserved site |
NP_001092232 | ProSiteProfiles | PS50071 | IPR001356 | 144 | 204 | 0.00e-00 | Homeobox domain |
NP_001092232 | SMART | SM00389 | IPR001356 | 146 | 208 | 1.60e-26 | Homeobox domain |
NP_001092232 | SUPERFAMILY | SSF46689 | IPR009057 | 130 | 206 | 0.00e-00 | Homeodomain-like |
Pfam Annotation | ||||
Protein | Pfam ID | E.value | Name | Description |
NP_001092232 | PF04731 | 2.8026e-45 | Caudal_act | Caudal like protein activation region |
NP_001092232 | PF00046 | 1.9e-20 | Homeobox | Homeobox domain |
Gene Ontology Annotation | |||
Protein | Entry | Name Space | Description |
NP_001092232 | GO:0005634 | cellular_component | nucleus |
NP_001092232 | GO:0000976 | molecular_function | transcription regulatory region sequence-specific DNA binding |
NP_001092232 | GO:0003700 | molecular_function | sequence-specific DNA binding transcription factor activity |