Basic Information | |||
Gene ID | 100154087 | ||
Gene Name | SOX17 | ||
Full Name | Uncharacterized protein | ||
Organism | Sus scrofa [9823] |
Cross Reference | |||
UniProt | F1RSI1 | UniGene | NULL |
PDB | NULL | OMIM | NULL |
KEGG | ssc:100154087 | UCSC | NULL |
Protein Interactions | |
DIP | NULL |
IntAct | NULL |
MINT | NULL |
STRING | NULL |
Ensembl/RefSeq | Transcript ID | Protein ID | Gene ID |
ENSEMBL | |||
REFSEQ |
InterPro Annotation | |||||||
Protein | Program | Term | IPRS | Start | End | Score | Description |
XP_001928411 | Gene3D | G3DSA:1.10.30.10 | IPR009071 | 67 | 147 | 2.60e-34 | High mobility group box domain |
XP_001928411 | Pfam | PF00505 | IPR009071 | 68 | 136 | 2.50e-25 | High mobility group box domain |
XP_001928411 | Pfam | PF12067 | IPR021934 | 201 | 405 | 6.40e-48 | Sox C-terminal transactivation domain |
XP_001928411 | ProSiteProfiles | PS50118 | IPR009071 | 68 | 136 | 0.00e-00 | High mobility group box domain |
XP_001928411 | ProSiteProfiles | PS51516 | IPR021934 | 280 | 406 | 0.00e-00 | Sox C-terminal transactivation domain |
XP_001928411 | SMART | SM00398 | IPR009071 | 67 | 137 | 5.00e-31 | High mobility group box domain |
XP_001928411 | SUPERFAMILY | SSF47095 | IPR009071 | 56 | 140 | 0.00e-00 | High mobility group box domain |
Pfam Annotation | ||||
Protein | Pfam ID | E.value | Name | Description |
XP_001928411 | PF12067 | 0 | Sox_C_TAD | Sox C-terminal transactivation domain |
XP_001928411 | PF00505 | 1.7e-25 | HMG_box | HMG (high mobility group) box |
XP_001928411 | PF09011 | 3.4e-11 | HMG_box_2 | HMG-box domain |
Gene Ontology Annotation | |||
Protein | Entry | Name Space | Description |
XP_001928411 | GO:0006351 | biological_process | transcription, DNA-templated |
XP_001928411 | GO:0006355 | biological_process | regulation of transcription, DNA-templated |
XP_001928411 | GO:0007275 | biological_process | multicellular organismal development |
XP_001928411 | GO:0007369 | biological_process | gastrulation |
XP_001928411 | GO:0016055 | biological_process | Wnt signaling pathway |
XP_001928411 | GO:0045893 | biological_process | positive regulation of transcription, DNA-templated |
XP_001928411 | GO:0045944 | biological_process | positive regulation of transcription from RNA polymerase II promoter |
XP_001928411 | GO:0005634 | cellular_component | nucleus |
XP_001928411 | GO:0003677 | molecular_function | DNA binding |
XP_001928411 | GO:0008013 | molecular_function | beta-catenin binding |
XP_001928411 | GO:0043565 | molecular_function | sequence-specific DNA binding |