Basic Information
Gene ID 100343480
Gene Name CSDE1
Full Name Uncharacterized protein
Organism Oryctolagus cuniculus [9986]

Cross Reference
UniProt G1T2C3 UniGene Ocu.6964
PDB NULL OMIM NULL
KEGG NULL UCSC NULL

Protein Interactions
DIP NULL
IntAct NULL
MINT NULL
STRING NULL

Ensembl/RefSeq
Transcript ID
Protein ID
Gene ID
ENSEMBL
REFSEQ

InterPro Annotation
Protein Program Term IPRS Start End Score Description
XP_002715791 Gene3D G3DSA:2.40.50.140 IPR012340 231 299 4.50e-26 Nucleic acid-binding, OB-fold
XP_002715791 Gene3D G3DSA:2.40.50.140 IPR012340 394 464 2.30e-24 Nucleic acid-binding, OB-fold
XP_002715791 Gene3D G3DSA:2.40.50.140 IPR012340 503 560 2.80e-10 Nucleic acid-binding, OB-fold
XP_002715791 Gene3D G3DSA:2.40.50.140 IPR012340 564 628 8.10e-21 Nucleic acid-binding, OB-fold
XP_002715791 Gene3D G3DSA:2.40.50.140 IPR012340 71 139 3.30e-25 Nucleic acid-binding, OB-fold
XP_002715791 Gene3D G3DSA:2.40.50.140 IPR012340 723 788 9.00e-21 Nucleic acid-binding, OB-fold
XP_002715791 Pfam PF00313 IPR002059 232 293 4.10e-16 Cold-shock protein, DNA-binding
XP_002715791 Pfam PF00313 IPR002059 397 457 9.70e-09 Cold-shock protein, DNA-binding
XP_002715791 Pfam PF00313 IPR002059 567 627 5.20e-14 Cold-shock protein, DNA-binding
XP_002715791 Pfam PF00313 IPR002059 721 783 4.40e-15 Cold-shock protein, DNA-binding
XP_002715791 Pfam PF00313 IPR002059 73 135 1.90e-14 Cold-shock protein, DNA-binding
XP_002715791 Pfam PF12901 IPR024642 802 835 2.30e-12 SUZ-C domain
XP_002715791 ProSitePatterns PS00352 IPR019844 243 262 - Cold-shock conserved site
XP_002715791 ProSitePatterns PS00352 IPR019844 406 425 - Cold-shock conserved site
XP_002715791 ProSitePatterns PS00352 IPR019844 576 595 - Cold-shock conserved site
XP_002715791 ProSitePatterns PS00352 IPR019844 83 102 - Cold-shock conserved site
XP_002715791 SMART SM00357 IPR011129 233 294 3.30e-19 Cold shock protein
XP_002715791 SMART SM00357 IPR011129 396 459 3.00e-18 Cold shock protein
XP_002715791 SMART SM00357 IPR011129 566 628 1.40e-16 Cold shock protein
XP_002715791 SMART SM00357 IPR011129 721 784 8.90e-19 Cold shock protein
XP_002715791 SMART SM00357 IPR011129 73 136 9.70e-19 Cold shock protein
XP_002715791 SUPERFAMILY SSF50249 IPR012340 227 299 0.00e-00 Nucleic acid-binding, OB-fold
XP_002715791 SUPERFAMILY SSF50249 IPR012340 382 463 0.00e-00 Nucleic acid-binding, OB-fold
XP_002715791 SUPERFAMILY SSF50249 IPR012340 550 628 0.00e-00 Nucleic acid-binding, OB-fold
XP_002715791 SUPERFAMILY SSF50249 IPR012340 63 138 0.00e-00 Nucleic acid-binding, OB-fold
XP_002715791 SUPERFAMILY SSF50249 IPR012340 707 787 0.00e-00 Nucleic acid-binding, OB-fold

Pfam Annotation
Protein Pfam ID E.value Name Description
XP_002715791 PF00313 0 CSD 'Cold-shock' DNA-binding domain
XP_002715791 PF14444 4.1e-15 S1-like S1-like
XP_002715791 PF12901 1.1e-12 SUZ-C SUZ-C motif
XP_002715791 PF11604 2.3e-07 CusF_Ec Copper binding periplasmic protein CusF

Gene Ontology Annotation
Protein Entry Name Space Description
XP_002715791 GO:0006355 biological_process regulation of transcription, DNA-templated
XP_002715791 GO:0070966 biological_process nuclear-transcribed mRNA catabolic process, no-go decay
XP_002715791 GO:0005737 cellular_component cytoplasm
XP_002715791 GO:0070937 cellular_component CRD-mediated mRNA stability complex
XP_002715791 GO:0003677 molecular_function DNA binding
XP_002715791 GO:0003723 molecular_function RNA binding