Basic Information
Gene ID 100565966
Gene Name CSDE1
Full Name Uncharacterized protein
Organism Anolis carolinensis [28377]

Cross Reference
UniProt G1KBQ5 UniGene Acr.4227
PDB NULL OMIM NULL
KEGG acs:100565966 UCSC NULL

Protein Interactions
DIP NULL
IntAct NULL
MINT NULL
STRING NULL

Ensembl/RefSeq
Transcript ID
Protein ID
Gene ID
ENSEMBL
REFSEQ

InterPro Annotation
Protein Program Term IPRS Start End Score Description
XP_003220534 Gene3D G3DSA:2.40.50.140 IPR012340 185 253 1.50e-26 Nucleic acid-binding, OB-fold
XP_003220534 Gene3D G3DSA:2.40.50.140 IPR012340 25 94 2.90e-25 Nucleic acid-binding, OB-fold
XP_003220534 Gene3D G3DSA:2.40.50.140 IPR012340 348 418 1.50e-24 Nucleic acid-binding, OB-fold
XP_003220534 Gene3D G3DSA:2.40.50.140 IPR012340 455 511 1.60e-07 Nucleic acid-binding, OB-fold
XP_003220534 Gene3D G3DSA:2.40.50.140 IPR012340 516 580 9.20e-21 Nucleic acid-binding, OB-fold
XP_003220534 Gene3D G3DSA:2.40.50.140 IPR012340 675 739 8.70e-21 Nucleic acid-binding, OB-fold
XP_003220534 Pfam PF00313 IPR002059 186 247 1.90e-16 Cold-shock protein, DNA-binding
XP_003220534 Pfam PF00313 IPR002059 27 89 1.20e-14 Cold-shock protein, DNA-binding
XP_003220534 Pfam PF00313 IPR002059 351 411 7.30e-09 Cold-shock protein, DNA-binding
XP_003220534 Pfam PF00313 IPR002059 519 579 4.70e-14 Cold-shock protein, DNA-binding
XP_003220534 Pfam PF00313 IPR002059 673 735 3.90e-15 Cold-shock protein, DNA-binding
XP_003220534 Pfam PF12901 IPR024642 754 787 1.70e-13 SUZ-C domain
XP_003220534 ProSitePatterns PS00352 IPR019844 197 216 - Cold-shock conserved site
XP_003220534 ProSitePatterns PS00352 IPR019844 360 379 - Cold-shock conserved site
XP_003220534 ProSitePatterns PS00352 IPR019844 37 56 - Cold-shock conserved site
XP_003220534 ProSitePatterns PS00352 IPR019844 528 547 - Cold-shock conserved site
XP_003220534 SMART SM00357 IPR011129 187 248 3.60e-21 Cold shock protein
XP_003220534 SMART SM00357 IPR011129 27 90 1.20e-18 Cold shock protein
XP_003220534 SMART SM00357 IPR011129 350 413 2.20e-17 Cold shock protein
XP_003220534 SMART SM00357 IPR011129 518 580 7.80e-16 Cold shock protein
XP_003220534 SMART SM00357 IPR011129 673 736 1.10e-18 Cold shock protein
XP_003220534 SUPERFAMILY SSF50249 IPR012340 17 93 0.00e-00 Nucleic acid-binding, OB-fold
XP_003220534 SUPERFAMILY SSF50249 IPR012340 180 253 0.00e-00 Nucleic acid-binding, OB-fold
XP_003220534 SUPERFAMILY SSF50249 IPR012340 336 417 0.00e-00 Nucleic acid-binding, OB-fold
XP_003220534 SUPERFAMILY SSF50249 IPR012340 514 580 0.00e-00 Nucleic acid-binding, OB-fold
XP_003220534 SUPERFAMILY SSF50249 IPR012340 659 739 0.00e-00 Nucleic acid-binding, OB-fold

Pfam Annotation
Protein Pfam ID E.value Name Description
XP_003220534 PF00313 0 CSD 'Cold-shock' DNA-binding domain
XP_003220534 PF14444 2.2e-14 S1-like S1-like
XP_003220534 PF12901 7.3e-14 SUZ-C SUZ-C motif
XP_003220534 PF11604 7.4e-07 CusF_Ec Copper binding periplasmic protein CusF

Gene Ontology Annotation
Protein Entry Name Space Description
XP_003220534 GO:0006355 biological_process regulation of transcription, DNA-templated
XP_003220534 GO:0070966 biological_process nuclear-transcribed mRNA catabolic process, no-go decay
XP_003220534 GO:0005737 cellular_component cytoplasm
XP_003220534 GO:0070937 cellular_component CRD-mediated mRNA stability complex
XP_003220534 GO:0003677 molecular_function DNA binding
XP_003220534 GO:0003723 molecular_function RNA binding