Basic Information
Gene ID 100926577
Gene Name CSDE1
Full Name Uncharacterized protein
Organism Sarcophilus harrisii [9305]

Cross Reference
UniProt G3W7N3 UniGene NULL
PDB NULL OMIM NULL
KEGG shr:100926577 UCSC NULL

Protein Interactions
DIP NULL
IntAct NULL
MINT NULL
STRING NULL

Ensembl/RefSeq
Transcript ID
Protein ID
Gene ID
ENSEMBL
REFSEQ

InterPro Annotation
Protein Program Term IPRS Start End Score Description
XP_003769865 Gene3D G3DSA:2.40.50.140 IPR012340 203 271 1.60e-26 Nucleic acid-binding, OB-fold
XP_003769865 Gene3D G3DSA:2.40.50.140 IPR012340 366 436 1.50e-24 Nucleic acid-binding, OB-fold
XP_003769865 Gene3D G3DSA:2.40.50.140 IPR012340 475 532 2.30e-08 Nucleic acid-binding, OB-fold
XP_003769865 Gene3D G3DSA:2.40.50.140 IPR012340 536 600 3.70e-21 Nucleic acid-binding, OB-fold
XP_003769865 Gene3D G3DSA:2.40.50.140 IPR012340 695 760 8.60e-21 Nucleic acid-binding, OB-fold
XP_003769865 Gene3D G3DSA:2.40.50.140 IPR012340 74 142 1.70e-25 Nucleic acid-binding, OB-fold
XP_003769865 Pfam PF00313 IPR002059 204 265 2.00e-16 Cold-shock protein, DNA-binding
XP_003769865 Pfam PF00313 IPR002059 369 429 7.50e-09 Cold-shock protein, DNA-binding
XP_003769865 Pfam PF00313 IPR002059 539 599 9.70e-15 Cold-shock protein, DNA-binding
XP_003769865 Pfam PF00313 IPR002059 693 755 4.20e-15 Cold-shock protein, DNA-binding
XP_003769865 Pfam PF00313 IPR002059 76 138 1.20e-14 Cold-shock protein, DNA-binding
XP_003769865 Pfam PF12901 IPR024642 774 807 3.50e-13 SUZ-C domain
XP_003769865 ProSitePatterns PS00352 IPR019844 215 234 - Cold-shock conserved site
XP_003769865 ProSitePatterns PS00352 IPR019844 378 397 - Cold-shock conserved site
XP_003769865 ProSitePatterns PS00352 IPR019844 548 567 - Cold-shock conserved site
XP_003769865 ProSitePatterns PS00352 IPR019844 86 105 - Cold-shock conserved site
XP_003769865 SMART SM00357 IPR011129 205 266 3.60e-21 Cold shock protein
XP_003769865 SMART SM00357 IPR011129 368 431 2.20e-17 Cold shock protein
XP_003769865 SMART SM00357 IPR011129 538 600 2.40e-17 Cold shock protein
XP_003769865 SMART SM00357 IPR011129 693 756 8.90e-19 Cold shock protein
XP_003769865 SMART SM00357 IPR011129 76 139 8.30e-19 Cold shock protein
XP_003769865 SUPERFAMILY SSF50249 IPR012340 199 271 0.00e-00 Nucleic acid-binding, OB-fold
XP_003769865 SUPERFAMILY SSF50249 IPR012340 354 435 0.00e-00 Nucleic acid-binding, OB-fold
XP_003769865 SUPERFAMILY SSF50249 IPR012340 532 600 0.00e-00 Nucleic acid-binding, OB-fold
XP_003769865 SUPERFAMILY SSF50249 IPR012340 66 142 0.00e-00 Nucleic acid-binding, OB-fold
XP_003769865 SUPERFAMILY SSF50249 IPR012340 679 759 0.00e-00 Nucleic acid-binding, OB-fold

Pfam Annotation
Protein Pfam ID E.value Name Description
XP_003769865 PF00313 0 CSD 'Cold-shock' DNA-binding domain
XP_003769865 PF14444 1.9e-14 S1-like S1-like
XP_003769865 PF12901 1.6e-13 SUZ-C SUZ-C motif
XP_003769865 PF11604 1.3e-07 CusF_Ec Copper binding periplasmic protein CusF

Gene Ontology Annotation
Protein Entry Name Space Description
XP_003769865 GO:0006355 biological_process regulation of transcription, DNA-templated
XP_003769865 GO:0070966 biological_process nuclear-transcribed mRNA catabolic process, no-go decay
XP_003769865 GO:0005737 cellular_component cytoplasm
XP_003769865 GO:0070937 cellular_component CRD-mediated mRNA stability complex
XP_003769865 GO:0003677 molecular_function DNA binding
XP_003769865 GO:0003723 molecular_function RNA binding