Basic Information
Gene ID 117180 ; Check Expression Profles ; Check TFs & Targets Binding
Gene Name Csde1; Unr
Full Name Cold shock domain-containing protein E1
Organism Rattus norvegicus [10116]

Cross Reference
UniProt P18395 UniGene Rn.3562
PDB NULL OMIM NULL
KEGG rno:117180 UCSC NULL

Protein Interactions
DIP NULL
IntAct NULL
MINT NULL
STRING 10116.ENSRNOP00000032423

Ensembl/RefSeq
Transcript ID
Protein ID
Gene ID
ENSEMBL
REFSEQ
REFSEQ

InterPro Annotation
Protein Program Term IPRS Start End Score Description
XP_003751901 Gene3D G3DSA:2.40.50.140 IPR012340 185 253 8.10e-27 Nucleic acid-binding, OB-fold
XP_003751901 Gene3D G3DSA:2.40.50.140 IPR012340 25 93 1.80e-25 Nucleic acid-binding, OB-fold
XP_003751901 Gene3D G3DSA:2.40.50.140 IPR012340 348 418 1.80e-24 Nucleic acid-binding, OB-fold
XP_003751901 Gene3D G3DSA:2.40.50.140 IPR012340 457 514 2.70e-10 Nucleic acid-binding, OB-fold
XP_003751901 Gene3D G3DSA:2.40.50.140 IPR012340 518 582 3.60e-21 Nucleic acid-binding, OB-fold
XP_003751901 Gene3D G3DSA:2.40.50.140 IPR012340 677 742 8.20e-21 Nucleic acid-binding, OB-fold
XP_003751901 Pfam PF00313 IPR002059 187 247 8.40e-17 Cold-shock protein, DNA-binding
XP_003751901 Pfam PF00313 IPR002059 27 89 1.80e-14 Cold-shock protein, DNA-binding
XP_003751901 Pfam PF00313 IPR002059 351 411 9.00e-09 Cold-shock protein, DNA-binding
XP_003751901 Pfam PF00313 IPR002059 521 581 9.40e-15 Cold-shock protein, DNA-binding
XP_003751901 Pfam PF00313 IPR002059 675 737 4.10e-15 Cold-shock protein, DNA-binding
XP_003751901 Pfam PF12901 IPR024642 756 789 7.60e-13 SUZ-C domain
XP_003751901 ProSitePatterns PS00352 IPR019844 197 216 - Cold-shock conserved site
XP_003751901 ProSitePatterns PS00352 IPR019844 360 379 - Cold-shock conserved site
XP_003751901 ProSitePatterns PS00352 IPR019844 37 56 - Cold-shock conserved site
XP_003751901 ProSitePatterns PS00352 IPR019844 530 549 - Cold-shock conserved site
XP_003751901 SMART SM00357 IPR011129 187 248 7.20e-22 Cold shock protein
XP_003751901 SMART SM00357 IPR011129 27 90 1.50e-18 Cold shock protein
XP_003751901 SMART SM00357 IPR011129 350 413 3.00e-18 Cold shock protein
XP_003751901 SMART SM00357 IPR011129 520 582 2.40e-17 Cold shock protein
XP_003751901 SMART SM00357 IPR011129 675 738 8.90e-19 Cold shock protein
XP_003751901 SUPERFAMILY SSF50249 IPR012340 17 93 0.00e-00 Nucleic acid-binding, OB-fold
XP_003751901 SUPERFAMILY SSF50249 IPR012340 182 253 0.00e-00 Nucleic acid-binding, OB-fold
XP_003751901 SUPERFAMILY SSF50249 IPR012340 336 417 0.00e-00 Nucleic acid-binding, OB-fold
XP_003751901 SUPERFAMILY SSF50249 IPR012340 504 582 0.00e-00 Nucleic acid-binding, OB-fold
XP_003751901 SUPERFAMILY SSF50249 IPR012340 661 741 0.00e-00 Nucleic acid-binding, OB-fold

Pfam Annotation
Protein Pfam ID E.value Name Description
XP_003751901 PF00313 0 CSD 'Cold-shock' DNA-binding domain
XP_003751901 PF14444 6.5e-16 S1-like S1-like
XP_003751901 PF12901 3.6e-13 SUZ-C SUZ-C motif
XP_003751901 PF11604 6.8e-08 CusF_Ec Copper binding periplasmic protein CusF

Gene Ontology Annotation
Protein Entry Name Space Description
XP_003751901 GO:0006355 biological_process regulation of transcription, DNA-templated
XP_003751901 GO:0070966 biological_process nuclear-transcribed mRNA catabolic process, no-go decay
XP_003751901 GO:0005737 cellular_component cytoplasm
XP_003751901 GO:0070937 cellular_component CRD-mediated mRNA stability complex
XP_003751901 GO:0003677 molecular_function DNA binding
XP_003751901 GO:0003723 molecular_function RNA binding