Basic Information | |||
Gene ID | 172236 | ||
Gene Name | lim-7; C04F1.3, CELE_C04F1.3 | ||
Full Name | CeLIM-7 | ||
Organism | Caenorhabditis elegans [6239] |
Cross Reference | |||
UniProt | G5EC36 | UniGene | Cel.18382 |
PDB | NULL | OMIM | NULL |
KEGG | cel:CELE_C04F1.3 | UCSC | NULL |
Protein Interactions | |
DIP | NULL |
IntAct | NULL |
MINT | NULL |
STRING | NULL |
Ensembl/RefSeq | Transcript ID | Protein ID | Gene ID |
ENSEMBL | |||
REFSEQ |
InterPro Annotation | |||||||
Protein | Program | Term | IPRS | Start | End | Score | Description |
C04F1.3 | Gene3D | G3DSA:1.10.10.60 | IPR009057 | 246 | 323 | 9.80e-18 | Homeodomain-like |
C04F1.3 | Gene3D | G3DSA:2.10.110.10 | IPR001781 | 121 | 173 | 7.50e-10 | Zinc finger, LIM-type |
C04F1.3 | Gene3D | G3DSA:2.10.110.10 | IPR001781 | 54 | 120 | 1.90e-14 | Zinc finger, LIM-type |
C04F1.3 | Pfam | PF00046 | IPR001356 | 267 | 322 | 7.40e-14 | Homeobox domain |
C04F1.3 | Pfam | PF00412 | IPR001781 | 118 | 172 | 8.70e-10 | Zinc finger, LIM-type |
C04F1.3 | Pfam | PF00412 | IPR001781 | 56 | 113 | 1.10e-13 | Zinc finger, LIM-type |
C04F1.3 | ProSitePatterns | PS00027 | IPR017970 | 298 | 321 | - | Homeobox, conserved site |
C04F1.3 | ProSitePatterns | PS00478 | IPR001781 | 118 | 154 | - | Zinc finger, LIM-type |
C04F1.3 | ProSitePatterns | PS00478 | IPR001781 | 56 | 91 | - | Zinc finger, LIM-type |
C04F1.3 | ProSiteProfiles | PS50023 | IPR001781 | 117 | 179 | 0.00e-00 | Zinc finger, LIM-type |
C04F1.3 | ProSiteProfiles | PS50023 | IPR001781 | 54 | 116 | 0.00e-00 | Zinc finger, LIM-type |
C04F1.3 | ProSiteProfiles | PS50071 | IPR001356 | 263 | 323 | 0.00e-00 | Homeobox domain |
C04F1.3 | SMART | SM00132 | IPR001781 | 117 | 172 | 1.50e-13 | Zinc finger, LIM-type |
C04F1.3 | SMART | SM00132 | IPR001781 | 55 | 109 | 8.10e-17 | Zinc finger, LIM-type |
C04F1.3 | SMART | SM00389 | IPR001356 | 265 | 327 | 2.10e-19 | Homeobox domain |
C04F1.3 | SUPERFAMILY | SSF46689 | IPR009057 | 245 | 324 | 0.00e-00 | Homeodomain-like |
Pfam Annotation | ||||
Protein | Pfam ID | E.value | Name | Description |
C04F1.3 | PF00412 | 4.7e-24 | LIM | LIM domain |
C04F1.3 | PF00046 | 4.4e-14 | Homeobox | Homeobox domain |
Gene Ontology Annotation | |||
Protein | Entry | Name Space | Description |
C04F1.3 | GO:0005634 | cellular_component | nucleus |
C04F1.3 | GO:0003677 | molecular_function | DNA binding |
C04F1.3 | GO:0003700 | molecular_function | sequence-specific DNA binding transcription factor activity |
C04F1.3 | GO:0008270 | molecular_function | zinc ion binding |
C04F1.3 | GO:0043565 | molecular_function | sequence-specific DNA binding |
Orthologs | |||||
TAXID | Organism | Gene ID | TAXID | Organism | Gene ID |
10224 | Saccoglossus kowalevskii | 100303560 | 10029 | Cricetulus griseus | 100774367 |
9597 | Pan paniscus | 100976744 | 7425 | Nasonia vitripennis | 100119365 |
7029 | Acyrthosiphon pisum | 100160905 | 59729 | Taeniopygia guttata | 100231918 |
8364 | Xenopus tropicalis | 100306962 | 9986 | Oryctolagus cuniculus | 100344068 |
9483 | Callithrix jacchus | 100385297 | 61853 | Nomascus leucogenys | 100587001 |
9785 | Loxodonta africana | 100664449 | 8128 | Oreochromis niloticus | 100711161 |
7463 | Apis florea | 100866965 | 34638 | Metaseiulus occidentalis | 100906507 |
30611 | Otolemur garnettii | 100965901 | 9555 | Papio anubis | 101011645 |
39432 | Saimiri boliviensis | 101053200 | 9595 | Gorilla gorilla | 101125662 |
9669 | Mustela putorius furo | 101691152 | 43179 | Ictidomys tridecemlineatus | 101955037 |
7897 | Latimeria chalumnae | 102347164 | 13735 | Pelodiscus sinensis | 102448416 |
10090 | Mus musculus | 16392 | 7955 | Danio rerio | 30147 |
7227 | Drosophila melanogaster | 35147 | 7668 | Strongylocentrotus purpuratus | 576365 |
9598 | Pan troglodytes | 738258 | 9646 | Ailuropoda melanoleuca | ENSAMEG00000005909 |
9913 | Bos taurus | ENSBTAG00000016651 | 9615 | Canis familiaris | ENSCAFG00000018449 |
9358 | Choloepus hoffmanni | ENSCHOG00000012504 | 7719 | Ciona intestinalis | ENSCING00000000421 |
51511 | Ciona savignyi | ENSCSAVG00000008352 | 9361 | Dasypus novemcinctus | ENSDNOG00000019122 |
10020 | Dipodomys ordii | ENSDORG00000016645 | 9796 | Equus caballus | ENSECAG00000009523 |
9371 | Echinops telfairi | ENSETEG00000013197 | 69293 | Gasterosteus aculeatus | ENSGACG00000010533 |
8049 | Gadus morhua | ENSGMOG00000006786 | 9315 | Macropus eugenii | ENSMEUG00000009405 |
9258 | Ornithorhynchus anatinus | ENSOANG00000010771 | 9978 | Ochotona princeps | ENSOPRG00000003082 |
8090 | Oryzias latipes | ENSORLG00000007859 | 9813 | Procavia capensis | ENSPCAG00000002431 |
9601 | Pongo abelii | ENSPPYG00000015449 | 132908 | Pteropus vampyrus | ENSPVAG00000014821 |
10116 | Rattus norvegicus | ENSRNOG00000015336 | 42254 | Sorex araneus | ENSSARG00000014194 |
9305 | Sarcophilus harrisii | ENSSHAG00000015947 | 9823 | Sus scrofa | ENSSSCG00000016883 |
37347 | Tupaia belangeri | ENSTBEG00000002277 | 31033 | Takifugu rubripes | ENSTRUG00000005679 |
9739 | Tursiops truncatus | ENSTTRG00000010834 | 8083 | Xiphophorus maculatus | ENSXMAG00000017187 |
7070 | Tribolium castaneum | 662583 | 28377 | Anolis carolinensis | ENSACAG00000004390 |
10141 | Cavia porcellus | ENSCPOG00000010057 | 9685 | Felis catus | ENSFCAG00000011470 |
59463 | Myotis lucifugus | ENSMLUG00000026945 | 13616 | Monodelphis domestica | ENSMODG00000011982 |
7757 | Petromyzon marinus | ENSPMAG00000001979 | 99883 | Tetraodon nigroviridis | ENSTNIG00000008382 |