Basic Information
Gene ID 172236
Gene Name lim-7; C04F1.3, CELE_C04F1.3
Full Name CeLIM-7
Organism Caenorhabditis elegans [6239]

Cross Reference
UniProt G5EC36 UniGene Cel.18382
PDB NULL OMIM NULL
KEGG cel:CELE_C04F1.3 UCSC NULL

Protein Interactions
DIP NULL
IntAct NULL
MINT NULL
STRING NULL

Ensembl/RefSeq
Transcript ID
Protein ID
Gene ID
ENSEMBL
REFSEQ

InterPro Annotation
Protein Program Term IPRS Start End Score Description
C04F1.3 Gene3D G3DSA:1.10.10.60 IPR009057 246 323 9.80e-18 Homeodomain-like
C04F1.3 Gene3D G3DSA:2.10.110.10 IPR001781 121 173 7.50e-10 Zinc finger, LIM-type
C04F1.3 Gene3D G3DSA:2.10.110.10 IPR001781 54 120 1.90e-14 Zinc finger, LIM-type
C04F1.3 Pfam PF00046 IPR001356 267 322 7.40e-14 Homeobox domain
C04F1.3 Pfam PF00412 IPR001781 118 172 8.70e-10 Zinc finger, LIM-type
C04F1.3 Pfam PF00412 IPR001781 56 113 1.10e-13 Zinc finger, LIM-type
C04F1.3 ProSitePatterns PS00027 IPR017970 298 321 - Homeobox, conserved site
C04F1.3 ProSitePatterns PS00478 IPR001781 118 154 - Zinc finger, LIM-type
C04F1.3 ProSitePatterns PS00478 IPR001781 56 91 - Zinc finger, LIM-type
C04F1.3 ProSiteProfiles PS50023 IPR001781 117 179 0.00e-00 Zinc finger, LIM-type
C04F1.3 ProSiteProfiles PS50023 IPR001781 54 116 0.00e-00 Zinc finger, LIM-type
C04F1.3 ProSiteProfiles PS50071 IPR001356 263 323 0.00e-00 Homeobox domain
C04F1.3 SMART SM00132 IPR001781 117 172 1.50e-13 Zinc finger, LIM-type
C04F1.3 SMART SM00132 IPR001781 55 109 8.10e-17 Zinc finger, LIM-type
C04F1.3 SMART SM00389 IPR001356 265 327 2.10e-19 Homeobox domain
C04F1.3 SUPERFAMILY SSF46689 IPR009057 245 324 0.00e-00 Homeodomain-like

Pfam Annotation
Protein Pfam ID E.value Name Description
C04F1.3 PF00412 4.7e-24 LIM LIM domain
C04F1.3 PF00046 4.4e-14 Homeobox Homeobox domain

Gene Ontology Annotation
Protein Entry Name Space Description
C04F1.3 GO:0005634 cellular_component nucleus
C04F1.3 GO:0003677 molecular_function DNA binding
C04F1.3 GO:0003700 molecular_function sequence-specific DNA binding transcription factor activity
C04F1.3 GO:0008270 molecular_function zinc ion binding
C04F1.3 GO:0043565 molecular_function sequence-specific DNA binding

Orthologs
TAXID Organism Gene ID TAXID Organism Gene ID
10224 Saccoglossus kowalevskii 100303560 10029 Cricetulus griseus 100774367
9597 Pan paniscus 100976744 7425 Nasonia vitripennis 100119365
7029 Acyrthosiphon pisum 100160905 59729 Taeniopygia guttata 100231918
8364 Xenopus tropicalis 100306962 9986 Oryctolagus cuniculus 100344068
9483 Callithrix jacchus 100385297 61853 Nomascus leucogenys 100587001
9785 Loxodonta africana 100664449 8128 Oreochromis niloticus 100711161
7463 Apis florea 100866965 34638 Metaseiulus occidentalis 100906507
30611 Otolemur garnettii 100965901 9555 Papio anubis 101011645
39432 Saimiri boliviensis 101053200 9595 Gorilla gorilla 101125662
9669 Mustela putorius furo 101691152 43179 Ictidomys tridecemlineatus 101955037
7897 Latimeria chalumnae 102347164 13735 Pelodiscus sinensis 102448416
10090 Mus musculus 16392 7955 Danio rerio 30147
7227 Drosophila melanogaster 35147 7668 Strongylocentrotus purpuratus 576365
9598 Pan troglodytes 738258 9646 Ailuropoda melanoleuca ENSAMEG00000005909
9913 Bos taurus ENSBTAG00000016651 9615 Canis familiaris ENSCAFG00000018449
9358 Choloepus hoffmanni ENSCHOG00000012504 7719 Ciona intestinalis ENSCING00000000421
51511 Ciona savignyi ENSCSAVG00000008352 9361 Dasypus novemcinctus ENSDNOG00000019122
10020 Dipodomys ordii ENSDORG00000016645 9796 Equus caballus ENSECAG00000009523
9371 Echinops telfairi ENSETEG00000013197 69293 Gasterosteus aculeatus ENSGACG00000010533
8049 Gadus morhua ENSGMOG00000006786 9315 Macropus eugenii ENSMEUG00000009405
9258 Ornithorhynchus anatinus ENSOANG00000010771 9978 Ochotona princeps ENSOPRG00000003082
8090 Oryzias latipes ENSORLG00000007859 9813 Procavia capensis ENSPCAG00000002431
9601 Pongo abelii ENSPPYG00000015449 132908 Pteropus vampyrus ENSPVAG00000014821
10116 Rattus norvegicus ENSRNOG00000015336 42254 Sorex araneus ENSSARG00000014194
9305 Sarcophilus harrisii ENSSHAG00000015947 9823 Sus scrofa ENSSSCG00000016883
37347 Tupaia belangeri ENSTBEG00000002277 31033 Takifugu rubripes ENSTRUG00000005679
9739 Tursiops truncatus ENSTTRG00000010834 8083 Xiphophorus maculatus ENSXMAG00000017187
7070 Tribolium castaneum 662583 28377 Anolis carolinensis ENSACAG00000004390
10141 Cavia porcellus ENSCPOG00000010057 9685 Felis catus ENSFCAG00000011470
59463 Myotis lucifugus ENSMLUG00000026945 13616 Monodelphis domestica ENSMODG00000011982
7757 Petromyzon marinus ENSPMAG00000001979 99883 Tetraodon nigroviridis ENSTNIG00000008382