Basic Information | |||
Gene ID | 30529 | ||
Gene Name | sox3; zgc:110279 | ||
Full Name | Transcription factor Sox-3 | ||
Organism | Danio rerio [7955] |
Cross Reference | |||
UniProt | Q6EJB7 | UniGene | Dr.104569 |
PDB | NULL | OMIM | NULL |
KEGG | dre:30529 | UCSC | NULL |
Protein Interactions | |
DIP | NULL |
IntAct | NULL |
MINT | NULL |
STRING | NULL |
Ensembl/RefSeq | Transcript ID | Protein ID | Gene ID |
ENSEMBL | |||
REFSEQ |
InterPro Annotation | |||||||
Protein | Program | Term | IPRS | Start | End | Score | Description |
NP_001001811 | Gene3D | G3DSA:1.10.30.10 | IPR009071 | 34 | 113 | 9.00e-41 | High mobility group box domain |
NP_001001811 | Pfam | PF00505 | IPR009071 | 35 | 103 | 5.70e-27 | High mobility group box domain |
NP_001001811 | Pfam | PF12336 | IPR022097 | 104 | 182 | 4.20e-31 | Transcription factor SOX |
NP_001001811 | ProSiteProfiles | PS50118 | IPR009071 | 35 | 103 | 0.00e-00 | High mobility group box domain |
NP_001001811 | SMART | SM00398 | IPR009071 | 34 | 104 | 5.60e-31 | High mobility group box domain |
NP_001001811 | SUPERFAMILY | SSF47095 | IPR009071 | 25 | 107 | 0.00e-00 | High mobility group box domain |
Pfam Annotation | ||||
Protein | Pfam ID | E.value | Name | Description |
NP_001001811 | PF12336 | 4.2e-31 | SOXp | SOX transcription factor |
NP_001001811 | PF00505 | 5.7e-27 | HMG_box | HMG (high mobility group) box |
NP_001001811 | PF09011 | 2.7e-11 | HMG_box_2 | HMG-box domain |
Gene Ontology Annotation | |||
Protein | Entry | Name Space | Description |
NP_001001811 | GO:0000122 | biological_process | negative regulation of transcription from RNA polymerase II promoter |
NP_001001811 | GO:0006351 | biological_process | transcription, DNA-templated |
NP_001001811 | GO:0006355 | biological_process | regulation of transcription, DNA-templated |
NP_001001811 | GO:0005634 | cellular_component | nucleus |
NP_001001811 | GO:0003677 | molecular_function | DNA binding |
NP_001001811 | GO:0043565 | molecular_function | sequence-specific DNA binding |