Basic Information | |||
Gene ID | 336679 | ||
Gene Name | csde1; OTTDARG00000026582 | ||
Full Name | Uncharacterized protein | ||
Organism | Danio rerio [7955] |
Cross Reference | |||
UniProt | E7F3H9 | UniGene | Dr.105254 |
PDB | NULL | OMIM | NULL |
KEGG | dre:336679 | UCSC | NULL |
Protein Interactions | |
DIP | NULL |
IntAct | NULL |
MINT | NULL |
STRING | NULL |
Ensembl/RefSeq | Transcript ID | Protein ID | Gene ID |
ENSEMBL | |||
ENSEMBL | |||
ENSEMBL | |||
REFSEQ | |||
REFSEQ |
InterPro Annotation | |||||||
Protein | Program | Term | IPRS | Start | End | Score | Description |
XP_005167073 | Gene3D | G3DSA:2.40.50.140 | IPR012340 | 147 | 199 | 2.30e-05 | Nucleic acid-binding, OB-fold |
XP_005167073 | Gene3D | G3DSA:2.40.50.140 | IPR012340 | 202 | 270 | 2.40e-25 | Nucleic acid-binding, OB-fold |
XP_005167073 | Gene3D | G3DSA:2.40.50.140 | IPR012340 | 25 | 93 | 2.30e-25 | Nucleic acid-binding, OB-fold |
XP_005167073 | Gene3D | G3DSA:2.40.50.140 | IPR012340 | 366 | 436 | 2.30e-24 | Nucleic acid-binding, OB-fold |
XP_005167073 | Gene3D | G3DSA:2.40.50.140 | IPR012340 | 476 | 531 | 4.30e-06 | Nucleic acid-binding, OB-fold |
XP_005167073 | Gene3D | G3DSA:2.40.50.140 | IPR012340 | 537 | 602 | 2.60e-20 | Nucleic acid-binding, OB-fold |
XP_005167073 | Gene3D | G3DSA:2.40.50.140 | IPR012340 | 696 | 761 | 2.30e-20 | Nucleic acid-binding, OB-fold |
XP_005167073 | Pfam | PF00313 | IPR002059 | 204 | 264 | 4.40e-16 | Cold-shock protein, DNA-binding |
XP_005167073 | Pfam | PF00313 | IPR002059 | 27 | 89 | 9.90e-15 | Cold-shock protein, DNA-binding |
XP_005167073 | Pfam | PF00313 | IPR002059 | 369 | 429 | 4.40e-08 | Cold-shock protein, DNA-binding |
XP_005167073 | Pfam | PF00313 | IPR002059 | 540 | 601 | 4.70e-12 | Cold-shock protein, DNA-binding |
XP_005167073 | Pfam | PF00313 | IPR002059 | 695 | 756 | 2.20e-14 | Cold-shock protein, DNA-binding |
XP_005167073 | Pfam | PF12901 | IPR024642 | 775 | 808 | 4.70e-13 | SUZ-C domain |
XP_005167073 | ProSitePatterns | PS00352 | IPR019844 | 214 | 233 | - | Cold-shock conserved site |
XP_005167073 | ProSitePatterns | PS00352 | IPR019844 | 37 | 56 | - | Cold-shock conserved site |
XP_005167073 | ProSitePatterns | PS00352 | IPR019844 | 378 | 397 | - | Cold-shock conserved site |
XP_005167073 | ProSitePatterns | PS00352 | IPR019844 | 549 | 568 | - | Cold-shock conserved site |
XP_005167073 | SMART | SM00357 | IPR011129 | 204 | 265 | 9.10e-21 | Cold shock protein |
XP_005167073 | SMART | SM00357 | IPR011129 | 27 | 90 | 2.80e-19 | Cold shock protein |
XP_005167073 | SMART | SM00357 | IPR011129 | 368 | 431 | 1.10e-15 | Cold shock protein |
XP_005167073 | SMART | SM00357 | IPR011129 | 539 | 601 | 3.00e-14 | Cold shock protein |
XP_005167073 | SMART | SM00357 | IPR011129 | 694 | 757 | 5.90e-16 | Cold shock protein |
XP_005167073 | SUPERFAMILY | SSF50249 | IPR012340 | 19 | 92 | 0.00e-00 | Nucleic acid-binding, OB-fold |
XP_005167073 | SUPERFAMILY | SSF50249 | IPR012340 | 201 | 270 | 0.00e-00 | Nucleic acid-binding, OB-fold |
XP_005167073 | SUPERFAMILY | SSF50249 | IPR012340 | 358 | 435 | 0.00e-00 | Nucleic acid-binding, OB-fold |
XP_005167073 | SUPERFAMILY | SSF50249 | IPR012340 | 536 | 601 | 0.00e-00 | Nucleic acid-binding, OB-fold |
XP_005167073 | SUPERFAMILY | SSF50249 | IPR012340 | 682 | 760 | 0.00e-00 | Nucleic acid-binding, OB-fold |
Pfam Annotation | ||||
Protein | Pfam ID | E.value | Name | Description |
XP_005167073 | PF00313 | 0 | CSD | 'Cold-shock' DNA-binding domain |
XP_005167073 | PF12901 | 9.9e-14 | SUZ-C | SUZ-C motif |
XP_005167073 | PF14444 | 2.6e-12 | S1-like | S1-like |
XP_005167073 | PF11604 | 1.1e-05 | CusF_Ec | Copper binding periplasmic protein CusF |
Gene Ontology Annotation | |||
Protein | Entry | Name Space | Description |
XP_005167073 | GO:0006355 | biological_process | regulation of transcription, DNA-templated |
XP_005167073 | GO:0070966 | biological_process | nuclear-transcribed mRNA catabolic process, no-go decay |
XP_005167073 | GO:0005737 | cellular_component | cytoplasm |
XP_005167073 | GO:0070937 | cellular_component | CRD-mediated mRNA stability complex |
XP_005167073 | GO:0003677 | molecular_function | DNA binding |
XP_005167073 | GO:0003723 | molecular_function | RNA binding |