Basic Information
Gene ID 336679
Gene Name csde1; OTTDARG00000026582
Full Name Uncharacterized protein
Organism Danio rerio [7955]

Cross Reference
UniProt E7F3H9 UniGene Dr.105254
PDB NULL OMIM NULL
KEGG dre:336679 UCSC NULL

Protein Interactions
DIP NULL
IntAct NULL
MINT NULL
STRING NULL

Ensembl/RefSeq
Transcript ID
Protein ID
Gene ID
ENSEMBL
ENSEMBL
ENSEMBL
REFSEQ
REFSEQ

InterPro Annotation
Protein Program Term IPRS Start End Score Description
XP_005167073 Gene3D G3DSA:2.40.50.140 IPR012340 147 199 2.30e-05 Nucleic acid-binding, OB-fold
XP_005167073 Gene3D G3DSA:2.40.50.140 IPR012340 202 270 2.40e-25 Nucleic acid-binding, OB-fold
XP_005167073 Gene3D G3DSA:2.40.50.140 IPR012340 25 93 2.30e-25 Nucleic acid-binding, OB-fold
XP_005167073 Gene3D G3DSA:2.40.50.140 IPR012340 366 436 2.30e-24 Nucleic acid-binding, OB-fold
XP_005167073 Gene3D G3DSA:2.40.50.140 IPR012340 476 531 4.30e-06 Nucleic acid-binding, OB-fold
XP_005167073 Gene3D G3DSA:2.40.50.140 IPR012340 537 602 2.60e-20 Nucleic acid-binding, OB-fold
XP_005167073 Gene3D G3DSA:2.40.50.140 IPR012340 696 761 2.30e-20 Nucleic acid-binding, OB-fold
XP_005167073 Pfam PF00313 IPR002059 204 264 4.40e-16 Cold-shock protein, DNA-binding
XP_005167073 Pfam PF00313 IPR002059 27 89 9.90e-15 Cold-shock protein, DNA-binding
XP_005167073 Pfam PF00313 IPR002059 369 429 4.40e-08 Cold-shock protein, DNA-binding
XP_005167073 Pfam PF00313 IPR002059 540 601 4.70e-12 Cold-shock protein, DNA-binding
XP_005167073 Pfam PF00313 IPR002059 695 756 2.20e-14 Cold-shock protein, DNA-binding
XP_005167073 Pfam PF12901 IPR024642 775 808 4.70e-13 SUZ-C domain
XP_005167073 ProSitePatterns PS00352 IPR019844 214 233 - Cold-shock conserved site
XP_005167073 ProSitePatterns PS00352 IPR019844 37 56 - Cold-shock conserved site
XP_005167073 ProSitePatterns PS00352 IPR019844 378 397 - Cold-shock conserved site
XP_005167073 ProSitePatterns PS00352 IPR019844 549 568 - Cold-shock conserved site
XP_005167073 SMART SM00357 IPR011129 204 265 9.10e-21 Cold shock protein
XP_005167073 SMART SM00357 IPR011129 27 90 2.80e-19 Cold shock protein
XP_005167073 SMART SM00357 IPR011129 368 431 1.10e-15 Cold shock protein
XP_005167073 SMART SM00357 IPR011129 539 601 3.00e-14 Cold shock protein
XP_005167073 SMART SM00357 IPR011129 694 757 5.90e-16 Cold shock protein
XP_005167073 SUPERFAMILY SSF50249 IPR012340 19 92 0.00e-00 Nucleic acid-binding, OB-fold
XP_005167073 SUPERFAMILY SSF50249 IPR012340 201 270 0.00e-00 Nucleic acid-binding, OB-fold
XP_005167073 SUPERFAMILY SSF50249 IPR012340 358 435 0.00e-00 Nucleic acid-binding, OB-fold
XP_005167073 SUPERFAMILY SSF50249 IPR012340 536 601 0.00e-00 Nucleic acid-binding, OB-fold
XP_005167073 SUPERFAMILY SSF50249 IPR012340 682 760 0.00e-00 Nucleic acid-binding, OB-fold

Pfam Annotation
Protein Pfam ID E.value Name Description
XP_005167073 PF00313 0 CSD 'Cold-shock' DNA-binding domain
XP_005167073 PF12901 9.9e-14 SUZ-C SUZ-C motif
XP_005167073 PF14444 2.6e-12 S1-like S1-like
XP_005167073 PF11604 1.1e-05 CusF_Ec Copper binding periplasmic protein CusF

Gene Ontology Annotation
Protein Entry Name Space Description
XP_005167073 GO:0006355 biological_process regulation of transcription, DNA-templated
XP_005167073 GO:0070966 biological_process nuclear-transcribed mRNA catabolic process, no-go decay
XP_005167073 GO:0005737 cellular_component cytoplasm
XP_005167073 GO:0070937 cellular_component CRD-mediated mRNA stability complex
XP_005167073 GO:0003677 molecular_function DNA binding
XP_005167073 GO:0003723 molecular_function RNA binding