Basic Information | |||
Gene ID | 395066 | ||
Gene Name | sox17a; sox17; TNeu118d15.1 | ||
Full Name | Transcription factor Sox-17-alpha | ||
Organism | Xenopus tropicalis [8364] |
Cross Reference | |||
UniProt | Q8AWH3 | UniGene | Str.114 |
PDB | NULL | OMIM | NULL |
KEGG | xtr:395066 | UCSC | NULL |
Protein Interactions | |
DIP | NULL |
IntAct | NULL |
MINT | NULL |
STRING | 8364.ENSXETP00000053697 |
Ensembl/RefSeq | Transcript ID | Protein ID | Gene ID |
ENSEMBL | |||
REFSEQ |
InterPro Annotation | |||||||
Protein | Program | Term | IPRS | Start | End | Score | Description |
NP_989425 | Gene3D | G3DSA:1.10.30.10 | IPR009071 | 60 | 136 | 3.50e-34 | High mobility group box domain |
NP_989425 | Pfam | PF00505 | IPR009071 | 61 | 129 | 2.30e-25 | High mobility group box domain |
NP_989425 | Pfam | PF12067 | IPR021934 | 186 | 381 | 3.80e-72 | Sox C-terminal transactivation domain |
NP_989425 | ProSiteProfiles | PS50118 | IPR009071 | 61 | 129 | 0.00e-00 | High mobility group box domain |
NP_989425 | ProSiteProfiles | PS51516 | IPR021934 | 267 | 382 | 0.00e-00 | Sox C-terminal transactivation domain |
NP_989425 | SMART | SM00398 | IPR009071 | 60 | 130 | 5.00e-31 | High mobility group box domain |
NP_989425 | SUPERFAMILY | SSF47095 | IPR009071 | 54 | 133 | 0.00e-00 | High mobility group box domain |
Pfam Annotation | ||||
Protein | Pfam ID | E.value | Name | Description |
NP_989425 | PF12067 | 0 | Sox_C_TAD | Sox C-terminal transactivation domain |
NP_989425 | PF00505 | 1.3e-25 | HMG_box | HMG (high mobility group) box |
NP_989425 | PF09011 | 2.8e-11 | HMG_box_2 | HMG-box domain |
Gene Ontology Annotation | |||
Protein | Entry | Name Space | Description |
NP_989425 | GO:0006351 | biological_process | transcription, DNA-templated |
NP_989425 | GO:0006355 | biological_process | regulation of transcription, DNA-templated |
NP_989425 | GO:0007275 | biological_process | multicellular organismal development |
NP_989425 | GO:0007369 | biological_process | gastrulation |
NP_989425 | GO:0016055 | biological_process | Wnt signaling pathway |
NP_989425 | GO:0045893 | biological_process | positive regulation of transcription, DNA-templated |
NP_989425 | GO:0045944 | biological_process | positive regulation of transcription from RNA polymerase II promoter |
NP_989425 | GO:0005634 | cellular_component | nucleus |
NP_989425 | GO:0003677 | molecular_function | DNA binding |
NP_989425 | GO:0008013 | molecular_function | beta-catenin binding |
NP_989425 | GO:0043565 | molecular_function | sequence-specific DNA binding |