Basic Information | |||
Gene ID | 406246 | ||
Gene Name | sox21b; si:ch211-247e2.1, zgc:110678 | ||
Full Name | Transcription factor Sox-21-B | ||
Organism | Danio rerio [7955] |
Cross Reference | |||
UniProt | Q6RVD7 | UniGene | Dr.116538 |
PDB | NULL | OMIM | NULL |
KEGG | dre:406246 | UCSC | NULL |
Protein Interactions | |
DIP | NULL |
IntAct | NULL |
MINT | NULL |
STRING | 7955.ENSDARP00000023480 |
Ensembl/RefSeq | Transcript ID | Protein ID | Gene ID |
ENSEMBL | |||
REFSEQ |
InterPro Annotation | |||||||
Protein | Program | Term | IPRS | Start | End | Score | Description |
NP_001009888 | Gene3D | G3DSA:1.10.30.10 | IPR009071 | 6 | 87 | 6.80e-42 | High mobility group box domain |
NP_001009888 | Pfam | PF00505 | IPR009071 | 8 | 76 | 2.50e-27 | High mobility group box domain |
NP_001009888 | Pfam | PF12336 | IPR022097 | 77 | 96 | 7.70e-07 | Transcription factor SOX |
NP_001009888 | ProSiteProfiles | PS50118 | IPR009071 | 8 | 76 | 0.00e-00 | High mobility group box domain |
NP_001009888 | SMART | SM00398 | IPR009071 | 7 | 77 | 2.70e-31 | High mobility group box domain |
NP_001009888 | SUPERFAMILY | SSF47095 | IPR009071 | 6 | 83 | 0.00e-00 | High mobility group box domain |
Pfam Annotation | ||||
Protein | Pfam ID | E.value | Name | Description |
NP_001009888 | PF00505 | 1.6e-27 | HMG_box | HMG (high mobility group) box |
NP_001009888 | PF09011 | 6.4e-11 | HMG_box_2 | HMG-box domain |
NP_001009888 | PF12336 | 3.1e-07 | SOXp | SOX transcription factor |
Gene Ontology Annotation | |||
Protein | Entry | Name Space | Description |
NP_001009888 | GO:0000122 | biological_process | negative regulation of transcription from RNA polymerase II promoter |
NP_001009888 | GO:0006351 | biological_process | transcription, DNA-templated |
NP_001009888 | GO:0045892 | biological_process | negative regulation of transcription, DNA-templated |
NP_001009888 | GO:0005634 | cellular_component | nucleus |
NP_001009888 | GO:0043565 | molecular_function | sequence-specific DNA binding |