Basic Information
Gene ID 457145
Gene Name CSDE1
Full Name Uncharacterized protein
Organism Pan troglodytes [9598]

Cross Reference
UniProt H2RD93 UniGene NULL
PDB NULL OMIM NULL
KEGG ptr:457145 UCSC NULL

Protein Interactions
DIP NULL
IntAct NULL
MINT NULL
STRING NULL

Ensembl/RefSeq
Transcript ID
Protein ID
Gene ID
ENSEMBL
REFSEQ

InterPro Annotation
Protein Program Term IPRS Start End Score Description
XP_003308347 Gene3D G3DSA:2.40.50.140 IPR012340 200 268 1.20e-26 Nucleic acid-binding, OB-fold
XP_003308347 Gene3D G3DSA:2.40.50.140 IPR012340 363 433 3.30e-24 Nucleic acid-binding, OB-fold
XP_003308347 Gene3D G3DSA:2.40.50.140 IPR012340 472 529 2.20e-10 Nucleic acid-binding, OB-fold
XP_003308347 Gene3D G3DSA:2.40.50.140 IPR012340 533 597 3.70e-21 Nucleic acid-binding, OB-fold
XP_003308347 Gene3D G3DSA:2.40.50.140 IPR012340 692 757 8.60e-21 Nucleic acid-binding, OB-fold
XP_003308347 Gene3D G3DSA:2.40.50.140 IPR012340 71 139 1.90e-25 Nucleic acid-binding, OB-fold
XP_003308347 Pfam PF00313 IPR002059 201 262 6.90e-17 Cold-shock protein, DNA-binding
XP_003308347 Pfam PF00313 IPR002059 366 426 2.60e-08 Cold-shock protein, DNA-binding
XP_003308347 Pfam PF00313 IPR002059 536 596 9.70e-15 Cold-shock protein, DNA-binding
XP_003308347 Pfam PF00313 IPR002059 690 752 4.20e-15 Cold-shock protein, DNA-binding
XP_003308347 Pfam PF00313 IPR002059 73 135 1.80e-14 Cold-shock protein, DNA-binding
XP_003308347 Pfam PF12901 IPR024642 771 804 7.80e-13 SUZ-C domain
XP_003308347 ProSitePatterns PS00352 IPR019844 212 231 - Cold-shock conserved site
XP_003308347 ProSitePatterns PS00352 IPR019844 375 394 - Cold-shock conserved site
XP_003308347 ProSitePatterns PS00352 IPR019844 545 564 - Cold-shock conserved site
XP_003308347 ProSitePatterns PS00352 IPR019844 83 102 - Cold-shock conserved site
XP_003308347 SMART SM00357 IPR011129 202 263 7.20e-22 Cold shock protein
XP_003308347 SMART SM00357 IPR011129 365 428 1.20e-17 Cold shock protein
XP_003308347 SMART SM00357 IPR011129 535 597 2.40e-17 Cold shock protein
XP_003308347 SMART SM00357 IPR011129 690 753 8.90e-19 Cold shock protein
XP_003308347 SMART SM00357 IPR011129 73 136 9.70e-19 Cold shock protein
XP_003308347 SUPERFAMILY SSF50249 IPR012340 196 268 0.00e-00 Nucleic acid-binding, OB-fold
XP_003308347 SUPERFAMILY SSF50249 IPR012340 351 432 0.00e-00 Nucleic acid-binding, OB-fold
XP_003308347 SUPERFAMILY SSF50249 IPR012340 519 597 0.00e-00 Nucleic acid-binding, OB-fold
XP_003308347 SUPERFAMILY SSF50249 IPR012340 63 139 0.00e-00 Nucleic acid-binding, OB-fold
XP_003308347 SUPERFAMILY SSF50249 IPR012340 676 756 0.00e-00 Nucleic acid-binding, OB-fold

Pfam Annotation
Protein Pfam ID E.value Name Description
XP_003308347 PF00313 0 CSD 'Cold-shock' DNA-binding domain
XP_003308347 PF14444 2.3e-15 S1-like S1-like
XP_003308347 PF12901 3.7e-13 SUZ-C SUZ-C motif
XP_003308347 PF11604 1.5e-07 CusF_Ec Copper binding periplasmic protein CusF

Gene Ontology Annotation
Protein Entry Name Space Description
XP_003308347 GO:0006355 biological_process regulation of transcription, DNA-templated
XP_003308347 GO:0070966 biological_process nuclear-transcribed mRNA catabolic process, no-go decay
XP_003308347 GO:0005737 cellular_component cytoplasm
XP_003308347 GO:0070937 cellular_component CRD-mediated mRNA stability complex
XP_003308347 GO:0003677 molecular_function DNA binding
XP_003308347 GO:0003723 molecular_function RNA binding