Basic Information | |||
Gene ID | 457145 | ||
Gene Name | CSDE1 | ||
Full Name | Uncharacterized protein | ||
Organism | Pan troglodytes [9598] |
Cross Reference | |||
UniProt | H2RD93 | UniGene | NULL |
PDB | NULL | OMIM | NULL |
KEGG | ptr:457145 | UCSC | NULL |
Protein Interactions | |
DIP | NULL |
IntAct | NULL |
MINT | NULL |
STRING | NULL |
Ensembl/RefSeq | Transcript ID | Protein ID | Gene ID |
ENSEMBL | |||
REFSEQ |
InterPro Annotation | |||||||
Protein | Program | Term | IPRS | Start | End | Score | Description |
XP_003308347 | Gene3D | G3DSA:2.40.50.140 | IPR012340 | 200 | 268 | 1.20e-26 | Nucleic acid-binding, OB-fold |
XP_003308347 | Gene3D | G3DSA:2.40.50.140 | IPR012340 | 363 | 433 | 3.30e-24 | Nucleic acid-binding, OB-fold |
XP_003308347 | Gene3D | G3DSA:2.40.50.140 | IPR012340 | 472 | 529 | 2.20e-10 | Nucleic acid-binding, OB-fold |
XP_003308347 | Gene3D | G3DSA:2.40.50.140 | IPR012340 | 533 | 597 | 3.70e-21 | Nucleic acid-binding, OB-fold |
XP_003308347 | Gene3D | G3DSA:2.40.50.140 | IPR012340 | 692 | 757 | 8.60e-21 | Nucleic acid-binding, OB-fold |
XP_003308347 | Gene3D | G3DSA:2.40.50.140 | IPR012340 | 71 | 139 | 1.90e-25 | Nucleic acid-binding, OB-fold |
XP_003308347 | Pfam | PF00313 | IPR002059 | 201 | 262 | 6.90e-17 | Cold-shock protein, DNA-binding |
XP_003308347 | Pfam | PF00313 | IPR002059 | 366 | 426 | 2.60e-08 | Cold-shock protein, DNA-binding |
XP_003308347 | Pfam | PF00313 | IPR002059 | 536 | 596 | 9.70e-15 | Cold-shock protein, DNA-binding |
XP_003308347 | Pfam | PF00313 | IPR002059 | 690 | 752 | 4.20e-15 | Cold-shock protein, DNA-binding |
XP_003308347 | Pfam | PF00313 | IPR002059 | 73 | 135 | 1.80e-14 | Cold-shock protein, DNA-binding |
XP_003308347 | Pfam | PF12901 | IPR024642 | 771 | 804 | 7.80e-13 | SUZ-C domain |
XP_003308347 | ProSitePatterns | PS00352 | IPR019844 | 212 | 231 | - | Cold-shock conserved site |
XP_003308347 | ProSitePatterns | PS00352 | IPR019844 | 375 | 394 | - | Cold-shock conserved site |
XP_003308347 | ProSitePatterns | PS00352 | IPR019844 | 545 | 564 | - | Cold-shock conserved site |
XP_003308347 | ProSitePatterns | PS00352 | IPR019844 | 83 | 102 | - | Cold-shock conserved site |
XP_003308347 | SMART | SM00357 | IPR011129 | 202 | 263 | 7.20e-22 | Cold shock protein |
XP_003308347 | SMART | SM00357 | IPR011129 | 365 | 428 | 1.20e-17 | Cold shock protein |
XP_003308347 | SMART | SM00357 | IPR011129 | 535 | 597 | 2.40e-17 | Cold shock protein |
XP_003308347 | SMART | SM00357 | IPR011129 | 690 | 753 | 8.90e-19 | Cold shock protein |
XP_003308347 | SMART | SM00357 | IPR011129 | 73 | 136 | 9.70e-19 | Cold shock protein |
XP_003308347 | SUPERFAMILY | SSF50249 | IPR012340 | 196 | 268 | 0.00e-00 | Nucleic acid-binding, OB-fold |
XP_003308347 | SUPERFAMILY | SSF50249 | IPR012340 | 351 | 432 | 0.00e-00 | Nucleic acid-binding, OB-fold |
XP_003308347 | SUPERFAMILY | SSF50249 | IPR012340 | 519 | 597 | 0.00e-00 | Nucleic acid-binding, OB-fold |
XP_003308347 | SUPERFAMILY | SSF50249 | IPR012340 | 63 | 139 | 0.00e-00 | Nucleic acid-binding, OB-fold |
XP_003308347 | SUPERFAMILY | SSF50249 | IPR012340 | 676 | 756 | 0.00e-00 | Nucleic acid-binding, OB-fold |
Pfam Annotation | ||||
Protein | Pfam ID | E.value | Name | Description |
XP_003308347 | PF00313 | 0 | CSD | 'Cold-shock' DNA-binding domain |
XP_003308347 | PF14444 | 2.3e-15 | S1-like | S1-like |
XP_003308347 | PF12901 | 3.7e-13 | SUZ-C | SUZ-C motif |
XP_003308347 | PF11604 | 1.5e-07 | CusF_Ec | Copper binding periplasmic protein CusF |
Gene Ontology Annotation | |||
Protein | Entry | Name Space | Description |
XP_003308347 | GO:0006355 | biological_process | regulation of transcription, DNA-templated |
XP_003308347 | GO:0070966 | biological_process | nuclear-transcribed mRNA catabolic process, no-go decay |
XP_003308347 | GO:0005737 | cellular_component | cytoplasm |
XP_003308347 | GO:0070937 | cellular_component | CRD-mediated mRNA stability complex |
XP_003308347 | GO:0003677 | molecular_function | DNA binding |
XP_003308347 | GO:0003723 | molecular_function | RNA binding |