Basic Information
Gene ID 513993
Gene Name CSDE1
Full Name CSDE1 protein
Organism Bos taurus [9913]

Cross Reference
UniProt A5D7D3 UniGene Bt.67516
PDB NULL OMIM NULL
KEGG bta:513993 UCSC NULL

Protein Interactions
DIP NULL
IntAct NULL
MINT NULL
STRING 9913.ENSBTAP00000000901

Ensembl/RefSeq
Transcript ID
Protein ID
Gene ID
ENSEMBL
REFSEQ
REFSEQ

InterPro Annotation
Protein Program Term IPRS Start End Score Description
XP_005204084 Gene3D G3DSA:2.40.50.140 IPR012340 154 222 1.60e-26 Nucleic acid-binding, OB-fold
XP_005204084 Gene3D G3DSA:2.40.50.140 IPR012340 25 93 1.70e-25 Nucleic acid-binding, OB-fold
XP_005204084 Gene3D G3DSA:2.40.50.140 IPR012340 317 388 1.70e-24 Nucleic acid-binding, OB-fold
XP_005204084 Gene3D G3DSA:2.40.50.140 IPR012340 426 483 2.40e-10 Nucleic acid-binding, OB-fold
XP_005204084 Gene3D G3DSA:2.40.50.140 IPR012340 487 551 3.40e-21 Nucleic acid-binding, OB-fold
XP_005204084 Gene3D G3DSA:2.40.50.140 IPR012340 646 711 7.90e-21 Nucleic acid-binding, OB-fold
XP_005204084 Pfam PF00313 IPR002059 156 216 1.50e-16 Cold-shock protein, DNA-binding
XP_005204084 Pfam PF00313 IPR002059 27 89 1.70e-14 Cold-shock protein, DNA-binding
XP_005204084 Pfam PF00313 IPR002059 320 380 8.60e-09 Cold-shock protein, DNA-binding
XP_005204084 Pfam PF00313 IPR002059 490 550 9.00e-15 Cold-shock protein, DNA-binding
XP_005204084 Pfam PF00313 IPR002059 644 706 3.90e-15 Cold-shock protein, DNA-binding
XP_005204084 Pfam PF12901 IPR024642 725 758 7.30e-13 SUZ-C domain
XP_005204084 ProSitePatterns PS00352 IPR019844 166 185 - Cold-shock conserved site
XP_005204084 ProSitePatterns PS00352 IPR019844 329 348 - Cold-shock conserved site
XP_005204084 ProSitePatterns PS00352 IPR019844 37 56 - Cold-shock conserved site
XP_005204084 ProSitePatterns PS00352 IPR019844 499 518 - Cold-shock conserved site
XP_005204084 SMART SM00357 IPR011129 156 217 4.20e-21 Cold shock protein
XP_005204084 SMART SM00357 IPR011129 27 90 9.70e-19 Cold shock protein
XP_005204084 SMART SM00357 IPR011129 319 382 3.00e-18 Cold shock protein
XP_005204084 SMART SM00357 IPR011129 489 551 2.40e-17 Cold shock protein
XP_005204084 SMART SM00357 IPR011129 644 707 8.90e-19 Cold shock protein
XP_005204084 SUPERFAMILY SSF50249 IPR012340 151 222 0.00e-00 Nucleic acid-binding, OB-fold
XP_005204084 SUPERFAMILY SSF50249 IPR012340 17 93 0.00e-00 Nucleic acid-binding, OB-fold
XP_005204084 SUPERFAMILY SSF50249 IPR012340 305 386 0.00e-00 Nucleic acid-binding, OB-fold
XP_005204084 SUPERFAMILY SSF50249 IPR012340 475 551 0.00e-00 Nucleic acid-binding, OB-fold
XP_005204084 SUPERFAMILY SSF50249 IPR012340 630 710 0.00e-00 Nucleic acid-binding, OB-fold

Pfam Annotation
Protein Pfam ID E.value Name Description
XP_005204084 PF00313 0 CSD 'Cold-shock' DNA-binding domain
XP_005204084 PF14444 2.3e-16 S1-like S1-like
XP_005204084 PF12901 3.5e-13 SUZ-C SUZ-C motif
XP_005204084 PF11604 6e-08 CusF_Ec Copper binding periplasmic protein CusF

Gene Ontology Annotation
Protein Entry Name Space Description
XP_005204084 GO:0006355 biological_process regulation of transcription, DNA-templated
XP_005204084 GO:0070966 biological_process nuclear-transcribed mRNA catabolic process, no-go decay
XP_005204084 GO:0005737 cellular_component cytoplasm
XP_005204084 GO:0070937 cellular_component CRD-mediated mRNA stability complex
XP_005204084 GO:0003677 molecular_function DNA binding
XP_005204084 GO:0003723 molecular_function RNA binding