Basic Information
Gene ID 595092
Gene Name csde1
Full Name Cold shock domain containing E1, RNA-binding
Organism Xenopus tropicalis [8364]

Cross Reference
UniProt Q501Q4 UniGene Str.39880
PDB NULL OMIM NULL
KEGG xtr:595092 UCSC NULL

Protein Interactions
DIP NULL
IntAct NULL
MINT NULL
STRING 8364.ENSXETP00000046371

Ensembl/RefSeq
Transcript ID
Protein ID
Gene ID
ENSEMBL
REFSEQ

InterPro Annotation
Protein Program Term IPRS Start End Score Description
NP_001025700 Gene3D G3DSA:2.40.50.140 IPR012340 184 253 1.30e-26 Nucleic acid-binding, OB-fold
NP_001025700 Gene3D G3DSA:2.40.50.140 IPR012340 24 92 6.50e-25 Nucleic acid-binding, OB-fold
NP_001025700 Gene3D G3DSA:2.40.50.140 IPR012340 410 467 5.00e-07 Nucleic acid-binding, OB-fold
NP_001025700 Gene3D G3DSA:2.40.50.140 IPR012340 470 536 3.50e-21 Nucleic acid-binding, OB-fold
NP_001025700 Gene3D G3DSA:2.40.50.140 IPR012340 676 742 4.30e-21 Nucleic acid-binding, OB-fold
NP_001025700 Pfam PF00313 IPR002059 186 247 1.90e-16 Cold-shock protein, DNA-binding
NP_001025700 Pfam PF00313 IPR002059 26 88 2.10e-14 Cold-shock protein, DNA-binding
NP_001025700 Pfam PF00313 IPR002059 473 534 2.30e-14 Cold-shock protein, DNA-binding
NP_001025700 Pfam PF00313 IPR002059 676 738 2.70e-14 Cold-shock protein, DNA-binding
NP_001025700 Pfam PF12901 IPR024642 757 790 6.30e-14 SUZ-C domain
NP_001025700 ProSitePatterns PS00352 IPR019844 197 216 - Cold-shock conserved site
NP_001025700 ProSitePatterns PS00352 IPR019844 36 55 - Cold-shock conserved site
NP_001025700 ProSitePatterns PS00352 IPR019844 483 502 - Cold-shock conserved site
NP_001025700 SMART SM00357 IPR011129 187 248 3.60e-21 Cold shock protein
NP_001025700 SMART SM00357 IPR011129 26 89 7.10e-18 Cold shock protein
NP_001025700 SMART SM00357 IPR011129 473 535 8.40e-17 Cold shock protein
NP_001025700 SMART SM00357 IPR011129 676 739 1.50e-19 Cold shock protein
NP_001025700 SUPERFAMILY SSF50249 IPR012340 177 253 0.00e-00 Nucleic acid-binding, OB-fold
NP_001025700 SUPERFAMILY SSF50249 IPR012340 20 91 0.00e-00 Nucleic acid-binding, OB-fold
NP_001025700 SUPERFAMILY SSF50249 IPR012340 467 535 0.00e-00 Nucleic acid-binding, OB-fold
NP_001025700 SUPERFAMILY SSF50249 IPR012340 661 742 0.00e-00 Nucleic acid-binding, OB-fold

Pfam Annotation
Protein Pfam ID E.value Name Description
NP_001025700 PF00313 0 CSD 'Cold-shock' DNA-binding domain
NP_001025700 PF14444 2.3e-15 S1-like S1-like
NP_001025700 PF12901 3e-14 SUZ-C SUZ-C motif
NP_001025700 PF11604 3.3e-07 CusF_Ec Copper binding periplasmic protein CusF

Gene Ontology Annotation
Protein Entry Name Space Description
NP_001025700 GO:0006355 biological_process regulation of transcription, DNA-templated
NP_001025700 GO:0070966 biological_process nuclear-transcribed mRNA catabolic process, no-go decay
NP_001025700 GO:0005737 cellular_component cytoplasm
NP_001025700 GO:0070937 cellular_component CRD-mediated mRNA stability complex
NP_001025700 GO:0003677 molecular_function DNA binding
NP_001025700 GO:0003723 molecular_function RNA binding