identification of genomic and pathogenicity islands in prokaryotic genome
A) Upload genome*:
1. file should be in
2. file name
be in name.extension format (eg. ecoli.gb, and not like ecoli.gb.txt).
Threshold dinucleotide bias
Minimum dinucleotide bias required for a putative genomic island
Threshold codon bias
Minimum codon bias required for a putative genomic island
Threshold %GC bias
Minimum %GC bias required for a putative genomic island
Maximum e-value to consider an alignment to VFPD as significant
of genomic and pathegenicity islands predicted in
C-125 genome by PredictBias.
Fields marked with an * are required. Therefore, only a prokaryotic genome, in genbank format, needs to be uploaded for basic analysis.
If you use this work in your research, please cite:
Pundhir S, Vijayvargiya H, Kumar A. (2008) PredictBias: a server for the identification of genomic and pathogenicity islands in prokaryotes.
In Silico Biol.
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