PredictBias

identification of genomic and pathogenicity islands in prokaryotic genome
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A) Upload genome*:
 
 1. file should be in GenBank format.
 2. file name should be in name.extension format (eg. ecoli.gb, and not like ecoli.gb.txt).
 
B) Parameters:
  Threshold dinucleotide bias    Minimum dinucleotide bias required for a putative genomic island
  Threshold codon bias    Minimum codon bias required for a putative genomic island
  Threshold %GC bias    Minimum %GC bias required for a putative genomic island
  E-value (RPSBlast)    Maximum e-value to consider an alignment to VFPD as significant
 
  
  1. An example of genomic and pathegenicity islands predicted in Bacillus halodurans C-125 genome by PredictBias.
  2. Fields marked with an * are required. Therefore, only a prokaryotic genome, in genbank format, needs to be uploaded for basic analysis.
  3. If you use this work in your research, please cite:
    Pundhir S, Vijayvargiya H, Kumar A. (2008) PredictBias: a server for the identification of genomic and pathogenicity islands in prokaryotes. In Silico Biol. 8(3-4):223-34. [PMID: 19032158]
Contact Sachin Pundhir for Bugs/Comments.
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