PredictBias

		>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase

		           signature.

		          Length = 261

		

		 Score =  115 bits (289), Expect = 2e-33

		 Identities = 81/250 (32%), Positives = 115/250 (46%), Gaps = 14/250 (5%)

		

		Query: 6   ENRTLVLTGANGGIGRAIAELFHASGANLVLTDLDREGLDAFAASLGSPERIA-TIKADA 64

		           E +   +TGA  GIG A+A    + GA++   D + E L+   +SL +  R A    AD 

		Sbjct: 7   EGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADV 66

		

		Query: 65  SSADDAEKTVALAMERFGGIDFLVPSAGIYQAKPSAEMSDADWYRTISINLDGVFYLCKR 124

		             +   ++  A      G ID LV  AG+ +      +SD +W  T S+N  GVF   + 

		Sbjct: 67  RDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRS 126

		

		Query: 125 ALPALK--EDSSIVTLASLAAYRGAYVNAHYGATKGAMVSMTRALSRELAP-KTRVNGVA 181

		               +      SIVT+ S  A       A Y ++K A V  T+ L  ELA    R N V+

		Sbjct: 127 VSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVS 186

		

		Query: 182 PGIIETPMTSEL----------LKTRMDETMTQTPLKRLGKPSEIASVIAFLCSPAASFV 231

		           PG  ET M   L          +K  ++   T  PLK+L KPS+IA  + FL S  A  +

		Sbjct: 187 PGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHI 246

		

		Query: 232 TGETIQVNGG 241

		           T   + V+GG

		Sbjct: 247 TMHNLCVDGG 256

		

		

		>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase

		           signature.

		          Length = 261

		

		 Score =  117 bits (294), Expect = 5e-34

		 Identities = 76/250 (30%), Positives = 119/250 (47%), Gaps = 12/250 (4%)

		

		Query: 7   KLVLVTGAGRGLGAAISSGAAEQGARVILVDIDGTAAKAQADALTAKGFVAEGHALDVTD 66

		           K+  +TGA +G+G A++   A QGA +  VD +    +    +L A+   AE    DV D

		Sbjct: 9   KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68

		

		Query: 67  RDAVAALADDILSRFGGLDVLVNNAGVAGRAAFDQPEAVEVWDRVIGVNLEGAFNVSHAL 126

		             A+  +   I    G +D+LVN AGV          + E W+    VN  G FN S ++

		Sbjct: 69  SAAIDEITARIEREMGPIDILVNVAGVLRPGLIHS-LSDEEWEATFSVNSTGVFNASRSV 127

		

		Query: 127 VPALKAAK-GNVVHLCSVAGFVSGGSTAGYVVSKGAIRSLTQVMARDLAPHGIRVNAVAP 185

		              +   + G++V + S    V   S A Y  SK A    T+ +  +LA + IR N V+P

		Sbjct: 128 SKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSP 187

		

		Query: 186 GIMMSEM---------AVAQLNRPGGTDWFMNRVMMKRIGETSEVVDPVVFLASPMASYI 236

		           G   ++M            Q+ + G  + F   + +K++ + S++ D V+FL S  A +I

		Sbjct: 188 GSTETDMQWSLWADENGAEQVIK-GSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHI 246

		

		Query: 237 TGTILPVDGG 246

		           T   L VDGG

		Sbjct: 247 TMHNLCVDGG 256

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score =  107 bits (269), Expect = 2e-29

		 Identities = 28/123 (22%), Positives = 55/123 (44%)

		

		Query: 11  VFIVDDDHSVRLGLVDLFASIGLKALCFASVNEFLKHAREEVPACLILDVRMPGESGTEF 70

		           + + DDD ++R  L    +  G      ++     +         ++ DV MP E+  + 

		Sbjct: 6   ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65

		

		Query: 71  HARMKGLDIRLPVIFITGHGDIAMGVKAIKDGAIDFLAKPFRNQDLLDAVQQAIRTDRKR 130

		             R+K     LPV+ ++        +KA + GA D+L KPF   +L+  + +A+   ++R

		Sbjct: 66  LPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKRR 125

		

		Query: 131 LRE 133

		             +

		Sbjct: 126 PSK 128

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 91.8 bits (228), Expect = 5e-25

		 Identities = 34/115 (29%), Positives = 57/115 (49%)

		

		Query: 3   RILLAEDDNDMRRFLVKALEKAGYHVTHFDNGASAYERLQEEPFSLLLTDIVMPEMDGIE 62

		            IL+A+DD  +R  L +AL +AGY V    N A+ +  +      L++TD+VMP+ +  +

		Sbjct: 5   TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64

		

		Query: 63  LARRATEIDPDLKIMFITGFAAVALNPDSDAPRDAKVLSKPFHLRDLVNEIEKML 117

		           L  R  +  PDL ++ ++          +        L KPF L +L+  I + L

		Sbjct: 65  LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119

		

		

		>OMPADOMAIN#OMPA domain signature.

		          Length = 346

		

		 Score = 51.5 bits (123), Expect = 2e-10

		 Identities = 32/144 (22%), Positives = 56/144 (38%), Gaps = 21/144 (14%)

		

		Query: 47  FPQEPTAQATMWPARPPKQTVS--------VYFPQDVTVFRPTSAQ-INQLHTLLWPV-P 96

		           F Q   A        P  +  +        V F  +    +P     ++QL++ L  + P

		Sbjct: 191 FGQGEAAPVVAPAPAPAPEVQTKHFTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDP 250

		

		Query: 97  KH--INVRGLTDNNCPPPGDTQVARVRALAIYNWLINQGVPASRI-TISYAPVKDYASN- 152

		           K   + V G TD       +  ++  RA ++ ++LI++G+PA +I             N 

		Sbjct: 251 KDGSVVVLGYTDRIGSDAYNQGLSERRAQSVVDYLISKGIPADKISARGMGESNPVTGNT 310

		

		Query: 153 -------APLSPGRVLNRRVDIEI 169

		                  A L      +RRV+IE+

		Sbjct: 311 CDNVKQRAALIDCLAPDRRVEIEV 334

		

		

		>PF03544#Gram-negative bacterial tonB protein

		          Length = 243

		

		 Score = 41.5 bits (97), Expect = 3e-06

		 Identities = 33/143 (23%), Positives = 42/143 (29%), Gaps = 20/143 (13%)

		

		Query: 33  VLLFLFVVGFIVVLLLLLVFHMRGNAENNHHSDKTMVQTSTVPMRTFKLPP---PPPPAP 89

		            LL + + G +V  LL    H               +     P+    + P    PP A 

		Sbjct: 18  TLLSVCIHGAVVAGLLYTSVH-----------QVIELPAPAQPISVTMVAPADLEPPQAV 66

		

		Query: 90  PAPPEPPAPPPAPAMPIAEPAAAAL------SLPPLPDDTPAKDDVLDKSASALMVVTKS 143

		             PPEP   P     PI EP   A          P P   P K     K     +    +

		Sbjct: 67  QPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESRPA 126

		

		Query: 144 SGDTNAQTAGDTVVQTTNARIQA 166

		           S   N   A  T    T A  + 

		Sbjct: 127 SPFENTAPARPTSSTATAATSKP 149

		

		

		>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein

		           signature.

		          Length = 522

		

		 Score = 50.9 bits (121), Expect = 2e-09

		 Identities = 47/197 (23%), Positives = 72/197 (36%), Gaps = 58/197 (29%)

		

		Query: 93  SHSNQSIDMAPEPGKWDTNLMVTTDQRMYDFDLRLMPGRNNQRVAYRVQFRYPAAAAAAA 152

		           S  + SI+++P    W TNL+V T++ +Y F LR+    N       V+  YP     ++

		Sbjct: 262 SPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKDNFASAYLTVKLEYPQRHEVSS 321

		

		Query: 153 V----------AAAQKRVV-QARMNA---------------------------------- 167

		           V          A  Q+ ++ Q  +N                                   

		Sbjct: 322 VIEEELKKREEAKRQRELIKQENLNTTAYINRVMMASNEQIINKEKIREEKQKIILDQAK 381

		

		Query: 168 -----------RPSPVNWNYTMQVG--TNSASIAPTLAYDDGRFTYLRFPNNRDFPAAFL 214

		                      + +PV  NY         S  I P+  +DDG FTY  F N    PA F+

		Sbjct: 382 ALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIFDDGTFTYFGFKNITLQPAIFV 441

		

		Query: 215 VAEDKSESIVNSHIDPS 231

		           V  D   S+ ++ IDP+

		Sbjct: 442 VQPDGKLSMTDAAIDPN 458

		

		

		>PF04335#VirB8 type IV secretion protein

		          Length = 227

		

		 Score =  216 bits (551), Expect = 5e-73

		 Identities = 58/217 (26%), Positives = 104/217 (47%), Gaps = 7/217 (3%)

		

		Query: 23  YDEALNWEAAHVRLVEKSERRAWKIAGAFGTITVLLGIGIAGMLPLKQHVPYLVRVNAQT 82

		           ++EA +WE   +   E+S++ AW +AG  G +     + +A + PLK   PY++ V+  T

		Sbjct: 14  FEEAASWERDKLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNT 73

		

		Query: 83  GAPDILTSLD-EKSVSYDTVMDKYWLSQYVIARETYDWYTLQKDYETVGMLSSPSEGQSY 141

		           G   I   L  + +++YD  + KY+L+ YV  RE +     ++ ++ V ++S+  E   +

		Sbjct: 74  GEASIAAKLHGDATITYDEAVRKYFLATYVRYREGWIAAAREEYFDAVMVMSARPEQDRW 133

		

		Query: 142 ASQFQGD--KALDKQYGSNVRTSVTIVSIVPNGKGIGTVRFAKTTKRTNETGDGETTHWI 199

		           +  ++ D  ++      +     V I  +   G  +  V F K +   + +     T  +

		Sbjct: 134 SRFYKTDNPQSPQNILANRTDVFVEIKRVSFLGGNVAQVYFTKESVTGSNS---TKTDAV 190

		

		Query: 200 ATIGYQYVNPSLMSESARLTNPLGFNVTSYRVDPEMG 236

		           ATI Y+        E  R  NPLG+ V SYR D E+ 

		Sbjct: 191 ATIKYKVDGTP-SKEVDRFKNPLGYQVESYRADVEVP 226

		

		

		>CHANLCOLICIN#Channel forming colicin signature.

		          Length = 522

		

		 Score = 32.0 bits (72), Expect = 0.004

		 Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 2/31 (6%)

		

		Query: 305 SGSSGGGGSGSAKAGGESSYSAGGNAMWSPA 335

		           SGS GGGG G +K+  ESS +    A WS A

		Sbjct: 32  SGSGGGGGKGGSKS--ESSAAIHATAKWSTA 60

		

		

		>HTHTETR#TetR bacterial regulatory protein HTH signature.

		          Length = 215

		

		 Score = 75.8 bits (186), Expect = 7e-19

		 Identities = 35/165 (21%), Positives = 67/165 (40%), Gaps = 9/165 (5%)

		

		Query: 44  RLAAGQDLAKRSQILEGAQSVFLRMGFDAASMNDITREAGVSKGTIYVYFNSKEDLFVAL 103

		           R    +    R  IL+ A  +F + G  + S+ +I + AGV++G IY +F  K DLF  +

		Sbjct: 3   RKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI 62

		

		Query: 104 CEHYRQTLFSSFIGQLEKGFSNRQELIDFGVALTTLITSSIAIRAQRIVVGVSERKPELA 163

		            E     +    +    K   +   +      L  ++ S++    +R+++ +   K E  

		Sbjct: 63  WELSESNIGELELEYQAKFPGDPLSV--LREILIHVLESTVTEERRRLLMEIIFHKCEFV 120

		

		Query: 164 ------ARFYERGPKRSHAIMAQSLQAMIDAGVL-EQHDVTRTAY 201

		                  +        S+  + Q+L+  I+A +L       R A 

		Sbjct: 121 GEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAI 165

		

		

		>TYPE3IMSPROT#Type III secretion system inner membrane S protein

		           family signature.

		          Length = 354

		

		 Score =  288 bits (738), Expect = 8e-98

		 Identities = 95/344 (27%), Positives = 164/344 (47%), Gaps = 9/344 (2%)

		

		Query: 10  KTEEATEQKIRDALDKGNMPFSREAPILAGIASFLVIAVFVAAPAATRLA---VFLRELI 66

		           KTE+ T +KIRDA  KG +  S+E    A I +   + + ++       +   +   E  

		Sbjct: 5   KTEQPTPKKIRDARKKGQVAKSKEVVSTALIVALSAMLMGLSDYYFEHFSKLMLIPAEQS 64

		

		Query: 67  DRPEDWLLNSAEDATRLFSVLALAVGAALVPVFIIIPLAGIAASAFQNAPRFVGERIRPQ 126

		             P    L      + +   + L       P+  +  L  IA+   Q      GE I+P 

		Sbjct: 65  YLPFSQAL------SYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPD 118

		

		Query: 127 ASRISPLKGWQRIFGRAGQVEFLKSLAKLLAASVIVFLVFFKGNSLFTDAVATDPGALPE 186

		             +I+P++G +RIF     VEFLKS+ K++  S++++++                  +  

		Sbjct: 119 IKKINPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITP 178

		

		Query: 187 FLRKNVVRLLVANVLAIAAIAGFDLAWSRIHWRQELRMTRQEVKDELKQSEGDPLVKSRL 246

		            L + + +L+V   +    I+  D A+    + +EL+M++ E+K E K+ EG P +KS+ 

		Sbjct: 179 LLGQILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKR 238

		

		Query: 247 RSLGRDRARRRMINAVPTATLIVANPTHFSVALRYKPNEDAAPVVVAKGQDLIALKIREI 306

		           R   ++   R M   V  ++++VANPTH ++ + YK  E   P+V  K  D     +R+I

		Sbjct: 239 RQFHQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKI 298

		

		Query: 307 AASHSIPVFEDVQLARALYKQVNVDQMIAPEFYKAVAELIRIIN 350

		           A    +P+ + + LARALY    VD  I  E  +A AE++R + 

		Sbjct: 299 AEEEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLE 342

		

		

		>FLGMOTORFLIN#Flagellar motor switch protein FliN signature.

		          Length = 137

		

		 Score = 88.8 bits (220), Expect = 3e-26

		 Identities = 37/84 (44%), Positives = 58/84 (69%), Gaps = 3/84 (3%)

		

		Query: 23  SASKPNLDLIMGIPVDVQVVLGGTTMPVSSLMKLGLGAVITLDKQIGDPVDIVVNGRVIA 82

		           S +  ++DLIM IPV + V LG T M +  L++L  G+V+ LD   G+P+DI++NG +IA

		Sbjct: 48  SGAMQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIA 107

		

		Query: 83  RGEVIVLEDDSPRFGVSLTEIIGK 106

		           +GEV+V+ D   ++GV +T+II  

		Sbjct: 108 QGEVVVVAD---KYGVRITDIITP 128

		

		

		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.

		          Length = 1541

		

		 Score = 28.1 bits (62), Expect = 0.015

		 Identities = 12/66 (18%), Positives = 29/66 (43%), Gaps = 1/66 (1%)

		

		Query: 68   AKLDARLAETQRVRREMDEAIEELNRLRKALSRDMRQARILAETPPPRQEKTPSAAEQPL 127

		            A+  +   ETQ    +    +E+  + +    +     ++ ++   P+QE++ +   Q  

		Sbjct: 1086 AQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQV-SPKQEQSETVQPQAE 1144

		

		Query: 128  PADKNA 133

		            PA +N 

		Sbjct: 1145 PAREND 1150

		

		

		>FLGMOTORFLIM#Flagellar motor switch protein FliM signature.

		          Length = 344

		

		 Score = 58.0 bits (140), Expect = 1e-11

		 Identities = 38/222 (17%), Positives = 83/222 (37%), Gaps = 20/222 (9%)

		

		Query: 96  LALDAVLVFSVIEAMFGAQGNLGPVDADRPFGMVEQKIANLLAGHLAGALDRVFNTSSSQ 155

		           L +D  + FS+I+ +FG  G        R    +E  +   +   +   +   +  +   

		Sbjct: 117 LEVDPSITFSIIDRLFGGTG--QAAKVQRDLTDIENSVMEGVIVRILANVRESW--TQVI 172

		

		Query: 156 PLFAPGDCIDT----ADFDRENFELSRLFTCRIAVTAAGKTGQMHLLLPRSTHKPMQDAV 211

		            L      I+T    A     + E+  L T    V    + G M+  +P  T +P+   +

		Sbjct: 173 DLRPRLGQIETNPQFAQIVPPS-EMVVLVTLETKV--GEEEGMMNFCIPYITIEPI---I 226

		

		Query: 212 AAFLRRPMDQA-----DPAWAKKLRQEVSRARIELEAFMQQGSMSLDALSRLEIGQVLKL 266

		           +    +    +        +   LR ++S   +++ A +    +S+  +  L +G +++L

		Sbjct: 227 SKLSSQFWFSSVRRSSTTQYMGVLRDKLSTVDMDVVAEVGSLRLSVRDILGLRVGDIIRL 286

		

		Query: 267 P-VDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPVNQEE 307

		                 +   L  GN++ F C  G  G     ++ + +    

		Sbjct: 287 HDTHVGDPFVLSIGNRKKFLCQPGVVGKKIAAQILERIESTS 328

		

		

		>FLGHOOKAP1#Flagellar hook-associated protein signature.

		          Length = 546

		

		 Score = 31.1 bits (70), Expect = 0.004

		 Identities = 5/33 (15%), Positives = 18/33 (54%)

		

		Query: 3  NNSIYVGLSSLITLERRMDAIAHNVANASTVGF 35

		          ++ I   +S L   +  ++  ++N+++ +  G+

		Sbjct: 1  SSLINNAMSGLNAAQAALNTASNNISSYNVAGY 33

		

		

		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

		           signature.

		          Length = 478

		

		 Score = 50.6 bits (121), Expect = 6e-09

		 Identities = 24/134 (17%), Positives = 52/134 (38%), Gaps = 12/134 (8%)

		

		Query: 121 QKDALQAALDGAQANLAKAQADADNLKLQTERARSLYKQKTVSQAMLDDRVAAEKQALAV 180

		           +       L   ++ L + +++  + K + +    L+K + + +          +Q    

		Sbjct: 260 KYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKL---------RQTTDN 310

		

		Query: 181 VQQAQASLEQAQINLGYTDIRAPFSGRI-GMANFSVGALVGPSSGPLATIV-SQDPIYVT 238

		           +      L + +     + IRAP S ++  +   + G +V  +   L  IV   D + VT

		Sbjct: 311 IGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAE-TLMVIVPEDDTLEVT 369

		

		Query: 239 FPVSDKTILDLTEG 252

		             V +K I  +  G

		Sbjct: 370 ALVQNKDIGFINVG 383

		

		

		

		 Score = 38.3 bits (89), Expect = 6e-05

		 Identities = 17/96 (17%), Positives = 35/96 (36%), Gaps = 7/96 (7%)

		

		Query: 107 EGQAVKTGDLLFAL-------QKDALQAALDGAQANLAKAQADADNLKLQTERARSLYKQ 159

		           EG++V+ GD+L  L            Q++L  A+    + Q  + +++L       L  +

		Sbjct: 114 EGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDE 173

		

		Query: 160 KTVSQAMLDDRVAAEKQALAVVQQAQASLEQAQINL 195

		                   ++ +             Q    Q ++NL

		Sbjct: 174 PYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNL 209

		

		

		>TYPE3OMGPROT#Type III secretion system outer membrane G protein

		           family signature.

		          Length = 607

		

		 Score = 29.1 bits (65), Expect = 0.011

		 Identities = 18/107 (16%), Positives = 34/107 (31%), Gaps = 11/107 (10%)

		

		Query: 11  DEQKAEEVRQRVLEL-QREYLIELGDAVVVVKDSDGRVKLNQLVNSTAAGAVSGALWGTL 69

		             ++    ++ +  L +    IE+  ++V +        L +L      G  +G     +

		Sbjct: 261 SPERMPMYQRLIHALDKPSARIEVALSIVDINADQ----LTELGVDWRVGIRTGNNHQVV 316

		

		Query: 70  IGFIFFMPLVGTALGAATGAIGGKLTDVGIDDNFMKDAASVLQPGSA 116

		           I         G     A+    G L D    D  +     +   GSA

		Sbjct: 317 IKTT------GDQSNIASNGALGSLVDARGLDYLLARVNLLENEGSA 357

		

		

		>BLACTAMASEA#Beta-lactamase class A signature.

		          Length = 286

		

		 Score = 29.0 bits (65), Expect = 0.026

		 Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 3/72 (4%)

		

		Query: 45  AVVTADGQTFKTGDADFAFAIESISKVFTLALVME--EIGPDSVREKVGADPTGLPFNSV 102

		            +  A G+T     AD  F + S  KV     V+   + G + +  K+      L   S 

		Sbjct: 44  EMDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSP 103

		

		Query: 103 IALELHNGKSLS 114

		           ++ E H    ++

		Sbjct: 104 VS-EKHLADGMT 114

		

		

		>cloacin#Cloacin signature.

		          Length = 551

		

		 Score = 36.6 bits (84), Expect = 3e-04

		 Identities = 36/125 (28%), Positives = 47/125 (37%), Gaps = 20/125 (16%)

		

		Query: 312 SGAAAPAAGALGAAGTGGGAASAAGGGLASALNASMAGGSTAG-GIGGATGVGSAGIGAS 370

		           +GA + +    G     G    A+ G   S+ N    GGS +G   GG +G G+ G   +

		Sbjct: 11  TGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGN 70

		

		Query: 371 TGGGSGATAKAAGSRVGGGAASGSANPVS---------AAASPASQESGSGLKQAAKQAG 421

		           +GGGSG           GG  S  A PV+          A   A   S   L  A     

		Sbjct: 71  SGGGSG----------TGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIADIM 120

		

		Query: 422 KAAKG 426

		            A KG

		Sbjct: 121 AALKG 125

		

		

		

		 Score = 32.4 bits (73), Expect = 0.006

		 Identities = 29/104 (27%), Positives = 39/104 (37%), Gaps = 4/104 (3%)

		

		Query: 277 GGMISGTSMGGGSAIGGMAAAGAAGAAAAIATVATSGAAAPAAGALGAAGTGGGAASAAG 336

		            G I+G   G G   G    +G +         + SG         G  G  G +   +G

		Sbjct: 17  SGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSG 76

		

		Query: 337 -GGLASALNASMAGGSTAGGIGGATGVGSAGIGASTGGGSGATA 379

		            GG  SA+ A +A G  A    GA G+    +  S G  S A A

		Sbjct: 77  TGGNLSAVAAPVAFGFPALSTPGAGGL---AVSISAGALSAAIA 117

		

		

		

		 Score = 30.5 bits (68), Expect = 0.022

		 Identities = 18/69 (26%), Positives = 27/69 (39%)

		

		Query: 273 PELIGGMISGTSMGGGSAIGGMAAAGAAGAAAAIATVATSGAAAPAAGALGAAGTGGGAA 332

		               GG   G   G G++ GG    G   A AA         + P AG L  + + G  +

		Sbjct: 54  IHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALS 113

		

		Query: 333 SAAGGGLAS 341

		           +A    +A+

		Sbjct: 114 AAIADIMAA 122

		

		

		

		 Score = 29.7 bits (66), Expect = 0.031

		 Identities = 35/125 (28%), Positives = 41/125 (32%), Gaps = 25/125 (20%)

		

		Query: 347 MAGGSTAGGIGGATGVGSAGIGASTGGGSGATAKAAGSRVGGGAASGSANPVSAAASPAS 406

		           M+GG   G   GA        G  TG G           VGGGA+ GS    S+  +P  

		Sbjct: 1   MSGGDGRGHNTGAHSTSGNINGGPTGLG-----------VGGGASDGSG--WSSENNPWG 47

		

		Query: 407 QESGSGLKQAAKQAGKAAKGGDDDMDQQAVAQQRQMTPKEGTGGNGKTVAQGAEVATRAL 466

		             SGSG+            G  +                 GTGGN   VA        AL

		Sbjct: 48  GGSGSGIHWGGGSGHGNGGGNGNSGGGS------------GTGGNLSAVAAPVAFGFPAL 95

		

		Query: 467 GVLGA 471

		              GA

		Sbjct: 96  STPGA 100

		

		

		

		 Score = 29.3 bits (65), Expect = 0.047

		 Identities = 23/106 (21%), Positives = 40/106 (37%), Gaps = 1/106 (0%)

		

		Query: 277 GGMISGTSMGGGSAIGGMAAAGAAGAAAAIATVATSGAAAPAAGALGAAGTGGGAASA-A 335

		           G   +  ++ GG    G+    + G+  +       G +       G +G G G  +  +

		Sbjct: 12  GAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNS 71

		

		Query: 336 GGGLASALNASMAGGSTAGGIGGATGVGSAGIGASTGGGSGATAKA 381

		           GGG  +  N S      A G    +  G+ G+  S   G+ + A A

		Sbjct: 72  GGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIA 117

		

		

		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

		           signature.

		          Length = 478

		

		 Score = 27.9 bits (62), Expect = 0.044

		 Identities = 10/85 (11%), Positives = 28/85 (32%), Gaps = 1/85 (1%)

		

		Query: 175 STFEDENALLDQLVSRSQSAIGRQQA-IQAGNEIAAQNVQQLQKLRDLVATQITLQGNYM 233

		           ST++++    +  + + ++      A I     ++     +L     L+  Q   +   +

		Sbjct: 196 STWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVL 255

		

		Query: 234 AQQNERQSVSDASEQQFRSRENTRG 258

		            Q+N+     +         E    

		Sbjct: 256 EQENKYVEAVNELRVYKSQLEQIES 280

		

		

		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

		           signature.

		          Length = 478

		

		 Score = 26.7 bits (59), Expect = 0.006

		 Identities = 9/60 (15%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

		

		Query: 7   KTLSERRADALSELETAKARLAKLDNEAAERIGRIA-IKSGLVNLELTDDQVREEFDRIV 65

		            +L  ++A A   +   + +  +  NE      ++  I+S +++ +     V + F   +

		Sbjct: 241 SSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEI 300

		

		

		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

		           signature.

		          Length = 478

		

		 Score = 29.8 bits (67), Expect = 0.030

		 Identities = 19/128 (14%), Positives = 41/128 (32%), Gaps = 20/128 (15%)

		

		Query: 326 RKDYLSSELEAAKLRIEL--------RDSKKAQLDQRRGEILGILKSHGALEQ--FLKLQ 375

		           +      EL   K R E         R    +++++ R +    L    A+ +   L+ +

		Sbjct: 199 QNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQE 258

		

		Query: 376 GELGRLESEVESLRQRFEAAEQLEGTRNELDIERNRLTIRLRRD--FAEQKDRLAEAIVA 433

		            +     +E+   + + E  E         +I   +   +L       E  D+L +    

		Sbjct: 259 NKYVEAVNELRVYKSQLEQIES--------EILSAKEEYQLVTQLFKNEILDKLRQTTDN 310

		

		Query: 434 FEETSQRL 441

		               +  L

		Sbjct: 311 IGLLTLEL 318

		

		

		>BLACTAMASEA#Beta-lactamase class A signature.

		          Length = 286

		

		 Score = 29.0 bits (65), Expect = 0.025

		 Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 8/59 (13%)

		

		Query: 9  LIYVAELGSLSKAADRLRIAQPALSRQIRLLEQELGTRLFDRHGRGMIATEKGHDVLRH 67

		          L  ++ L +L  A      A P    QI+L E +L  R+    G   +    G  +   

		Sbjct: 6  LCIISLLATLPLAVH----ASPQPLEQIKLSESQLSGRV----GMIEMDLASGRTLTAW 56

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 28.6 bits (64), Expect = 0.027

		 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

		

		Query: 13  YQSHSLVGASAR-KTVLHDISISIGQGETVALLGRSGCGKSTLARLL 58

		                LVG SA  + +   ++  +    T+ + G SG GK  +AR L

		Sbjct: 134 QDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARAL 180

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 51.8 bits (124), Expect = 8e-10

		 Identities = 19/119 (15%), Positives = 44/119 (36%), Gaps = 5/119 (4%)

		

		Query: 139 ATRLMIIEDEPLIAMDIEQMVESLGHEVVGIARTKDEALALYEKEKPRMVLADIQLADGS 198

		              +++ +D+  I   + Q +   G++V                    +V+ D+ + D  

		Sbjct: 3   GATILVADDDAAIRTVLNQALSRAGYDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPDE- 60

		

		Query: 199 SGIDAVNEIL-HDNTIPVIFITAF--PERLLTGERPEPTFLVTKPFNPDMVKALISQAL 254

		           +  D +  I      +PV+ ++A       +          + KPF+   +  +I +AL

		Sbjct: 61  NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119

		

		

		>PF06580#Sensor histidine kinase

		          Length = 349

		

		 Score = 49.1 bits (117), Expect = 2e-08

		 Identities = 48/225 (21%), Positives = 91/225 (40%), Gaps = 25/225 (11%)

		

		Query: 236 RERTAELEQERSIAERERKRVEVLLQDTN-HRIGNSLVTVSSLLGLQMRQTQDENARAAL 294

		             + AE++Q +  +  +  ++  L    N H + N+L  + +L+           AR  L

		Sbjct: 143 NYKQAEIDQWKMASMAQEAQLMALKAQINPHFMFNALNNIRALI-----LEDPTKAREML 197

		

		Query: 295 VAARD--RVQTVSTAHRRLRLGEDMETARVDEFLQSVIGDIRSAIGHDRDIRFETDFSPL 352

		            +  +  R     +  R++ L +++    VD +LQ  +  I+     +  ++FE   +P 

		Sbjct: 198 TSLSELMRYSLRYSNARQVSLADELTV--VDSYLQ--LASIQ----FEDRLQFENQINP- 248

		

		Query: 353 DLKARDVTTIGIVLGELITNAIKHAFPGRKQ-GRISVSLKPDMENVPVLVVEDDGVGWQR 411

		                DV    +++  L+ N IKH      Q G+I +    D   V  L VE+ G     

		Sbjct: 249 --AIMDVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTV-TLEVENTG---SL 302

		

		Query: 412 KAGDDKRVNGLGMI-VVEQLCLQFGEKPVYGQAENSCGTRVTVRL 455

		              + K   G G+  V E+L + +G +     +E        V +

		Sbjct: 303 ALKNTKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLI 347

		

		

		>SACTRNSFRASE#Streptothricin acetyltransferase signature.

		          Length = 173

		

		 Score = 35.7 bits (82), Expect = 4e-05

		 Identities = 21/101 (20%), Positives = 32/101 (31%), Gaps = 7/101 (6%)

		

		Query: 59  LEQVD--GNAIFGAFHGEELLGIAGHHRHERRTERHRGTLASVYVEPQARGLKLGEALVQ 116

		           +  V+  G A F  +     +G        R        +  + V    R   +G AL+ 

		Sbjct: 57  VSYVEEEGKAAFLYYLENNCIG----RIKIRSNWNGYALIEDIAVAKDYRKKGVGTALLH 112

		

		Query: 117 KVIDHA-ARHVVVLDARVVATNEAAKRIYYALGFKTCGVER 156

		           K I+ A   H   L       N +A   Y    F    V+ 

		Sbjct: 113 KAIEWAKENHFCGLMLETQDINISACHFYAKHHFIIGAVDT 153

		

		

		>OMPADOMAIN#OMPA domain signature.

		          Length = 346

		

		 Score = 51.5 bits (123), Expect = 2e-10

		 Identities = 32/144 (22%), Positives = 56/144 (38%), Gaps = 21/144 (14%)

		

		Query: 47  FPQEPTAQATMWPARPPKQTVS--------VYFPQDVTVFRPTSAQ-INQLHTLLWPV-P 96

		           F Q   A        P  +  +        V F  +    +P     ++QL++ L  + P

		Sbjct: 191 FGQGEAAPVVAPAPAPAPEVQTKHFTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDP 250

		

		Query: 97  KH--INVRGLTDNNCPPPGDTQVARVRALAIYNWLINQGVPASRI-TISYAPVKDYASN- 152

		           K   + V G TD       +  ++  RA ++ ++LI++G+PA +I             N 

		Sbjct: 251 KDGSVVVLGYTDRIGSDAYNQGLSERRAQSVVDYLISKGIPADKISARGMGESNPVTGNT 310

		

		Query: 153 -------APLSPGRVLNRRVDIEI 169

		                  A L      +RRV+IE+

		Sbjct: 311 CDNVKQRAALIDCLAPDRRVEIEV 334

		

		

		>PF03544#Gram-negative bacterial tonB protein

		          Length = 243

		

		 Score = 41.5 bits (97), Expect = 3e-06

		 Identities = 33/143 (23%), Positives = 42/143 (29%), Gaps = 20/143 (13%)

		

		Query: 33  VLLFLFVVGFIVVLLLLLVFHMRGNAENNHHSDKTMVQTSTVPMRTFKLPP---PPPPAP 89

		            LL + + G +V  LL    H               +     P+    + P    PP A 

		Sbjct: 18  TLLSVCIHGAVVAGLLYTSVH-----------QVIELPAPAQPISVTMVAPADLEPPQAV 66

		

		Query: 90  PAPPEPPAPPPAPAMPIAEPAAAAL------SLPPLPDDTPAKDDVLDKSASALMVVTKS 143

		             PPEP   P     PI EP   A          P P   P K     K     +    +

		Sbjct: 67  QPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESRPA 126

		

		Query: 144 SGDTNAQTAGDTVVQTTNARIQA 166

		           S   N   A  T    T A  + 

		Sbjct: 127 SPFENTAPARPTSSTATAATSKP 149

		

		

		>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein

		           signature.

		          Length = 522

		

		 Score = 50.9 bits (121), Expect = 2e-09

		 Identities = 47/197 (23%), Positives = 72/197 (36%), Gaps = 58/197 (29%)

		

		Query: 93  SHSNQSIDMAPEPGKWDTNLMVTTDQRMYDFDLRLMPGRNNQRVAYRVQFRYPAAAAAAA 152

		           S  + SI+++P    W TNL+V T++ +Y F LR+    N       V+  YP     ++

		Sbjct: 262 SPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKDNFASAYLTVKLEYPQRHEVSS 321

		

		Query: 153 V----------AAAQKRVV-QARMNA---------------------------------- 167

		           V          A  Q+ ++ Q  +N                                   

		Sbjct: 322 VIEEELKKREEAKRQRELIKQENLNTTAYINRVMMASNEQIINKEKIREEKQKIILDQAK 381

		

		Query: 168 -----------RPSPVNWNYTMQVG--TNSASIAPTLAYDDGRFTYLRFPNNRDFPAAFL 214

		                      + +PV  NY         S  I P+  +DDG FTY  F N    PA F+

		Sbjct: 382 ALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIFDDGTFTYFGFKNITLQPAIFV 441

		

		Query: 215 VAEDKSESIVNSHIDPS 231

		           V  D   S+ ++ IDP+

		Sbjct: 442 VQPDGKLSMTDAAIDPN 458

		

		

		>PF04335#VirB8 type IV secretion protein

		          Length = 227

		

		 Score =  216 bits (551), Expect = 5e-73

		 Identities = 58/217 (26%), Positives = 104/217 (47%), Gaps = 7/217 (3%)

		

		Query: 23  YDEALNWEAAHVRLVEKSERRAWKIAGAFGTITVLLGIGIAGMLPLKQHVPYLVRVNAQT 82

		           ++EA +WE   +   E+S++ AW +AG  G +     + +A + PLK   PY++ V+  T

		Sbjct: 14  FEEAASWERDKLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNT 73

		

		Query: 83  GAPDILTSLD-EKSVSYDTVMDKYWLSQYVIARETYDWYTLQKDYETVGMLSSPSEGQSY 141

		           G   I   L  + +++YD  + KY+L+ YV  RE +     ++ ++ V ++S+  E   +

		Sbjct: 74  GEASIAAKLHGDATITYDEAVRKYFLATYVRYREGWIAAAREEYFDAVMVMSARPEQDRW 133

		

		Query: 142 ASQFQGD--KALDKQYGSNVRTSVTIVSIVPNGKGIGTVRFAKTTKRTNETGDGETTHWI 199

		           +  ++ D  ++      +     V I  +   G  +  V F K +   + +     T  +

		Sbjct: 134 SRFYKTDNPQSPQNILANRTDVFVEIKRVSFLGGNVAQVYFTKESVTGSNS---TKTDAV 190

		

		Query: 200 ATIGYQYVNPSLMSESARLTNPLGFNVTSYRVDPEMG 236

		           ATI Y+        E  R  NPLG+ V SYR D E+ 

		Sbjct: 191 ATIKYKVDGTP-SKEVDRFKNPLGYQVESYRADVEVP 226

		

		

		>CHANLCOLICIN#Channel forming colicin signature.

		          Length = 522

		

		 Score = 32.0 bits (72), Expect = 0.004

		 Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 2/31 (6%)

		

		Query: 305 SGSSGGGGSGSAKAGGESSYSAGGNAMWSPA 335

		           SGS GGGG G +K+  ESS +    A WS A

		Sbjct: 32  SGSGGGGGKGGSKS--ESSAAIHATAKWSTA 60

		

		

		>TCRTETB#Tetracycline resistance protein TetB signature.

		          Length = 458

		

		 Score =  101 bits (253), Expect = 4e-25

		 Identities = 72/402 (17%), Positives = 147/402 (36%), Gaps = 19/402 (4%)

		

		Query: 36  FMAILDIQIVSASLSEIQAGLGASTDEISWVQTSYLIAEVIMIPLSGFWGRLLSTRVLFT 95

		           F ++L+  +++ SL +I           +WV T++++   I   + G     L  + L  

		Sbjct: 24  FFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLL 83

		

		Query: 96  ISAAGFTLASMLCATA-TNIEQMIVYRAIQGFIGGGMIPSVFAAAFTIF-PPSKRSIVSP 153

		                    S++     +    +I+ R IQG  G    P++       + P   R     

		Sbjct: 84  FGIIINCFGSVIGFVGHSFFSLLIMARFIQG-AGAAAFPALVMVVVARYIPKENRGKAFG 142

		

		Query: 154 MIGLVATLAPTIGPTIGGYLSHAFSWHWLFLVNVGPGILVTIAAWNLIDFDEGDLSLLDK 213

		           +IG +  +   +GP IGG ++H   W +L L+   P I + I    L+   + ++ +   

		Sbjct: 143 LIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLI---PMITI-ITVPFLMKLLKKEVRIKGH 198

		

		Query: 214 FDWWGLFGMAAFLGSLEYVLEEGPRNDWLQDHTIFIMSIILTVGAIVFFYRVFTAEQPIV 273

		           FD  G+  M+  +                         I+  +  ++F   +     P V

		Sbjct: 199 FDIKGIILMSVGIVFFMLFTTS---YSIS-------FLIVSVLSFLIFVKHIRKVTDPFV 248

		

		Query: 274 DFRAFRNMNFAFGSLFSFVMGVGLYGLTYLYPLYLSMIRGYDALMIGEA-LFVSGLAMFF 332

		           D    +N+ F  G L   ++   + G   + P  +  +       IG   +F   +++  

		Sbjct: 249 DPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVII 308

		

		Query: 333 TAPVAGFLSNRMDPRLMMMIGFVGFAIGTWLVTGLTADWDFNELLMPQILRGCSLMLCMV 392

		              + G L +R  P  ++ IG    ++  +L      +     + +  +     L     

		Sbjct: 309 FGYIGGILVDRRGPLYVLNIGVTFLSVS-FLTASFLLETTSWFMTIIIVFVLGGLSFTKT 367

		

		Query: 393 PINNLALGTLPPSLMKNASGLFNLTRNLGGAVGLAVINTILT 434

		            I+ +   +L          L N T  L    G+A++  +L+

		Sbjct: 368 VISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLS 409

		

		

		>HTHTETR#TetR bacterial regulatory protein HTH signature.

		          Length = 215

		

		 Score = 75.8 bits (186), Expect = 7e-19

		 Identities = 35/165 (21%), Positives = 67/165 (40%), Gaps = 9/165 (5%)

		

		Query: 44  RLAAGQDLAKRSQILEGAQSVFLRMGFDAASMNDITREAGVSKGTIYVYFNSKEDLFVAL 103

		           R    +    R  IL+ A  +F + G  + S+ +I + AGV++G IY +F  K DLF  +

		Sbjct: 3   RKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI 62

		

		Query: 104 CEHYRQTLFSSFIGQLEKGFSNRQELIDFGVALTTLITSSIAIRAQRIVVGVSERKPELA 163

		            E     +    +    K   +   +      L  ++ S++    +R+++ +   K E  

		Sbjct: 63  WELSESNIGELELEYQAKFPGDPLSV--LREILIHVLESTVTEERRRLLMEIIFHKCEFV 120

		

		Query: 164 ------ARFYERGPKRSHAIMAQSLQAMIDAGVL-EQHDVTRTAY 201

		                  +        S+  + Q+L+  I+A +L       R A 

		Sbjct: 121 GEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAI 165

		

		

		>TYPE3IMSPROT#Type III secretion system inner membrane S protein

		           family signature.

		          Length = 354

		

		 Score =  288 bits (738), Expect = 8e-98

		 Identities = 95/344 (27%), Positives = 164/344 (47%), Gaps = 9/344 (2%)

		

		Query: 10  KTEEATEQKIRDALDKGNMPFSREAPILAGIASFLVIAVFVAAPAATRLA---VFLRELI 66

		           KTE+ T +KIRDA  KG +  S+E    A I +   + + ++       +   +   E  

		Sbjct: 5   KTEQPTPKKIRDARKKGQVAKSKEVVSTALIVALSAMLMGLSDYYFEHFSKLMLIPAEQS 64

		

		Query: 67  DRPEDWLLNSAEDATRLFSVLALAVGAALVPVFIIIPLAGIAASAFQNAPRFVGERIRPQ 126

		             P    L      + +   + L       P+  +  L  IA+   Q      GE I+P 

		Sbjct: 65  YLPFSQAL------SYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPD 118

		

		Query: 127 ASRISPLKGWQRIFGRAGQVEFLKSLAKLLAASVIVFLVFFKGNSLFTDAVATDPGALPE 186

		             +I+P++G +RIF     VEFLKS+ K++  S++++++                  +  

		Sbjct: 119 IKKINPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITP 178

		

		Query: 187 FLRKNVVRLLVANVLAIAAIAGFDLAWSRIHWRQELRMTRQEVKDELKQSEGDPLVKSRL 246

		            L + + +L+V   +    I+  D A+    + +EL+M++ E+K E K+ EG P +KS+ 

		Sbjct: 179 LLGQILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKR 238

		

		Query: 247 RSLGRDRARRRMINAVPTATLIVANPTHFSVALRYKPNEDAAPVVVAKGQDLIALKIREI 306

		           R   ++   R M   V  ++++VANPTH ++ + YK  E   P+V  K  D     +R+I

		Sbjct: 239 RQFHQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKI 298

		

		Query: 307 AASHSIPVFEDVQLARALYKQVNVDQMIAPEFYKAVAELIRIIN 350

		           A    +P+ + + LARALY    VD  I  E  +A AE++R + 

		Sbjct: 299 AEEEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLE 342

		

		

		>FLGMOTORFLIN#Flagellar motor switch protein FliN signature.

		          Length = 137

		

		 Score = 88.8 bits (220), Expect = 3e-26

		 Identities = 37/84 (44%), Positives = 58/84 (69%), Gaps = 3/84 (3%)

		

		Query: 23  SASKPNLDLIMGIPVDVQVVLGGTTMPVSSLMKLGLGAVITLDKQIGDPVDIVVNGRVIA 82

		           S +  ++DLIM IPV + V LG T M +  L++L  G+V+ LD   G+P+DI++NG +IA

		Sbjct: 48  SGAMQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIA 107

		

		Query: 83  RGEVIVLEDDSPRFGVSLTEIIGK 106

		           +GEV+V+ D   ++GV +T+II  

		Sbjct: 108 QGEVVVVAD---KYGVRITDIITP 128

		

		

		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.

		          Length = 1541

		

		 Score = 28.1 bits (62), Expect = 0.015

		 Identities = 12/66 (18%), Positives = 29/66 (43%), Gaps = 1/66 (1%)

		

		Query: 68   AKLDARLAETQRVRREMDEAIEELNRLRKALSRDMRQARILAETPPPRQEKTPSAAEQPL 127

		            A+  +   ETQ    +    +E+  + +    +     ++ ++   P+QE++ +   Q  

		Sbjct: 1086 AQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQV-SPKQEQSETVQPQAE 1144

		

		Query: 128  PADKNA 133

		            PA +N 

		Sbjct: 1145 PAREND 1150

		

		

		>FLGMOTORFLIM#Flagellar motor switch protein FliM signature.

		          Length = 344

		

		 Score = 58.0 bits (140), Expect = 1e-11

		 Identities = 38/222 (17%), Positives = 83/222 (37%), Gaps = 20/222 (9%)

		

		Query: 96  LALDAVLVFSVIEAMFGAQGNLGPVDADRPFGMVEQKIANLLAGHLAGALDRVFNTSSSQ 155

		           L +D  + FS+I+ +FG  G        R    +E  +   +   +   +   +  +   

		Sbjct: 117 LEVDPSITFSIIDRLFGGTG--QAAKVQRDLTDIENSVMEGVIVRILANVRESW--TQVI 172

		

		Query: 156 PLFAPGDCIDT----ADFDRENFELSRLFTCRIAVTAAGKTGQMHLLLPRSTHKPMQDAV 211

		            L      I+T    A     + E+  L T    V    + G M+  +P  T +P+   +

		Sbjct: 173 DLRPRLGQIETNPQFAQIVPPS-EMVVLVTLETKV--GEEEGMMNFCIPYITIEPI---I 226

		

		Query: 212 AAFLRRPMDQA-----DPAWAKKLRQEVSRARIELEAFMQQGSMSLDALSRLEIGQVLKL 266

		           +    +    +        +   LR ++S   +++ A +    +S+  +  L +G +++L

		Sbjct: 227 SKLSSQFWFSSVRRSSTTQYMGVLRDKLSTVDMDVVAEVGSLRLSVRDILGLRVGDIIRL 286

		

		Query: 267 P-VDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPVNQEE 307

		                 +   L  GN++ F C  G  G     ++ + +    

		Sbjct: 287 HDTHVGDPFVLSIGNRKKFLCQPGVVGKKIAAQILERIESTS 328

		

		

		>FLGHOOKAP1#Flagellar hook-associated protein signature.

		          Length = 546

		

		 Score = 31.1 bits (70), Expect = 0.004

		 Identities = 5/33 (15%), Positives = 18/33 (54%)

		

		Query: 3  NNSIYVGLSSLITLERRMDAIAHNVANASTVGF 35

		          ++ I   +S L   +  ++  ++N+++ +  G+

		Sbjct: 1  SSLINNAMSGLNAAQAALNTASNNISSYNVAGY 33

		

		

		>FLGHOOKAP1#Flagellar hook-associated protein signature.

		          Length = 546

		

		 Score = 30.7 bits (69), Expect = 0.001

		 Identities = 10/38 (26%), Positives = 20/38 (52%)

		

		Query: 99  NVNMVVEMADMREANRSYEANLQVVRQARELISMTIDL 136

		            VN+  E  +++   + Y AN QV++ A  +    I++

		Sbjct: 508 GVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545

		

		

		>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE

		           signature.

		          Length = 103

		

		 Score = 35.4 bits (81), Expect = 8e-06

		 Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 2/81 (2%)

		

		Query: 33  QAVPAAPGASFGEVLSQMTGSVSQKLQAAEATSIQGIKG--DAPVRDVVSSVMEAEQSLQ 90

		           Q     P  SF   L      +S    AA   + +   G     + DV++ + +A  S+Q

		Sbjct: 23  QESLPQPTISFAGQLHAALDRISDTQTAARTQAEKFTLGEPGVALNDVMTDMQKASVSMQ 82

		

		Query: 91  TAIAIRDKIVQAYLEISRMPI 111

		             I +R+K+V AY E+  M +

		Sbjct: 83  MGIQVRNKLVAAYQEVMSMQV 103

		

		

		>FLGHOOKAP1#Flagellar hook-associated protein signature.

		          Length = 546

		

		 Score = 42.6 bits (100), Expect = 9e-07

		 Identities = 10/45 (22%), Positives = 21/45 (46%)

		

		Query: 213 SIKQGYLEASNVDPVKEITDLITAQRAYEMNSKVIQAADEMAATV 257

		            +       S V+  +E  +L   Q+ Y  N++V+Q A+ +   +

		Sbjct: 498 QLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDAL 542

		

		

		

		 Score = 39.2 bits (91), Expect = 1e-05

		 Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 15/85 (17%)

		

		Query: 4  LTIAATGMNAQQLNLEVIANNIANINTTGFKRARAEFTDLLYQSERTAGVPNQANQAIVP 63

		          +  A +G+NA Q  L   +NNI++ N  G+ R            + T      +      

		Sbjct: 4  INNAMSGLNAAQAALNTASNNISSYNVAGYTR------------QTTIMAQANSTLG--- 48

		

		Query: 64 EGALVGLGVQTAAVRNLHIQGSFNQ 88

		           G  VG GV  + V+  +     NQ

		Sbjct: 49 AGGWVGNGVYVSGVQREYDAFITNQ 73

		

		

		>FLGPRINGFLGI#Flagellar P-ring protein signature.

		          Length = 373

		

		 Score =  422 bits (1086), Expect = e-149

		 Identities = 209/348 (60%), Positives = 275/348 (79%)

		

		Query: 97  SAVARLKDIATIQGVRENQLVGYGLVIGLKGTGDSLRNSPFTEQSMRAMLDNLGISAPRN 156

		           +  +R+KDIA++Q  R+NQL+GYGLV+GL+GTGDSLR+SPFTEQSMRAML NLGI+    

		Sbjct: 26  ADTSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDSLRSSPFTEQSMRAMLQNLGITTQGG 85

		

		Query: 157 STRSKNTAAVIVTANLPAFAGAGSRIDVTVSSLGDATSLQGGTLVMTQLMGADNQIYAVA 216

		            + +KN AAV+VTANLP FA  GSR+DVTVSSLGDATSL+GG L+MT L GAD QIYAVA

		Sbjct: 86  QSNAKNIAAVMVTANLPPFASPGSRVDVTVSSLGDATSLRGGNLIMTSLSGADGQIYAVA 145

		

		Query: 217 QGNMIVSGFSAEGEAASVTQGVPTSGRIPNGALVEREVAGSFGKDREMIVELRDPDFTTA 276

		           QG +IV+GFSA+G+AA++TQGV TS R+PNGA++ERE+   F     ++++LR+PDF+TA

		Sbjct: 146 QGALIVNGFSAQGDAATLTQGVTTSARVPNGAIIERELPSKFKDSVNLVLQLRNPDFSTA 205

		

		Query: 277 VRAADTINVFAKRRYGRGVAIARDAKTIRLSRPKNVPAARFLAELEGLPITTDEVARVVV 336

		           VR AD +N FA+ RYG  +A  RD++ I + +P+     R +AE+E L + TD  A+VV+

		Sbjct: 206 VRVADVVNAFARARYGDPIAEPRDSQEIAVQKPRVADLTRLMAEIENLTVETDTPAKVVI 265

		

		Query: 337 DERTGTVVIGEKVRISKVAISHGSLTVRVTETPMVVQPEPFSDGETAVEPNTDIAVNQQN 396

		           +ERTGT+VIG  VRIS+VA+S+G+LTV+VTE+P V+QP PFS G+TAV+P TDI   Q+ 

		Sbjct: 266 NERTGTIVIGADVRISRVAVSYGTLTVQVTESPQVIQPAPFSRGQTAVQPQTDIMAMQEG 325

		

		Query: 397 AKIGILSGANLENLVKGLNQIGVKPTGIIAILQAIKTSGALHAELVVQ 444

		           +K+ I+ G +L  LV GLN IG+K  GIIAILQ IK++GAL AELV+Q

		Sbjct: 326 SKVAIVEGPDLRTLVAGLNSIGLKADGIIAILQGIKSAGALQAELVLQ 373

		

		

		>FLGLRINGFLGH#Flagellar L-ring protein signature.

		          Length = 232

		

		 Score =  185 bits (471), Expect = 5e-61

		 Identities = 65/236 (27%), Positives = 96/236 (40%), Gaps = 27/236 (11%)

		

		Query: 10  MVLLLAGCA---TKPEEIG-----RAPDLSPVAAHLGMQNNPQFNGYPARPGKASYSLWD 61

		           +VL L GCA   + P   G       P  +PVA     Q+  Q   Y  +P         

		Sbjct: 15  LVLSLTGCAWIPSTPLVQGATSAQPVPGPTPVANGSIFQS-AQPINYGYQP--------- 64

		

		Query: 62  QRSTNFFKDPRAATPGDVLTVIISINDRANLDNKTDRERVSKGIYGGGGSFATSSITGAA 121

		                 F+D R    GD LT+++  N  A+  +  +  R  K     G       + G  

		Sbjct: 65  -----LFEDRRPRNIGDTLTIVLQENVSASKSSSANASRDGKT--NFGFDTVPRYLQGLF 117

		

		Query: 122 AGGDMDASVNTHSDSKSKGKGTIERSEDIRLQIAAIVTDTLPNGNLIIRGSQEVRVNNEL 181

		                 A V     +   GKG    S      +   V   L NGNL + G +++ +N   

		Sbjct: 118 GNAR--ADVEASGGNTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGEKQIAINQGT 175

		

		Query: 182 RVLNVAGVVRPRDISGNNTISYDKIAEARISYGGRGRLSEIQQPPYGQQILDQFSP 237

		             +  +GVV PR ISG+NT+   ++A+ARI Y G G ++E Q   + Q+     SP

		Sbjct: 176 EFIRFSGVVNPRTISGSNTVPSTQVADARIEYVGNGYINEAQNMGWLQRFFLNLSP 231

		

		

		>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP

		           signature.

		          Length = 245

		

		 Score =  248 bits (636), Expect = 1e-85

		 Identities = 100/234 (42%), Positives = 149/234 (63%), Gaps = 3/234 (1%)

		

		Query: 13  LALTVSAQAQQALPLDKLLPAGSGAASGQIVQLFGLLTVLSIAPGLLIMVTSFTRFAIAF 72

		           L L       Q   +      G G +    VQ    +T L+  P +L+M+TSFTR  I F

		Sbjct: 12  LWLITPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRIIIVF 71

		

		Query: 73  SLLRSGLGLQTAPASMVMISLALFMTFYVMAPAFDRAWNNGVQPLMRNEITQEAAFGEIS 132

		            LLR+ LG  +AP + V++ LALF+TF++M+P  D+ + +  QP    +I+ + A  + +

		Sbjct: 72  GLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALEKGA 131

		

		Query: 133 QPFREFMMAQVRDKDLRLFEDLAD-PSFRTSDDGIVDFRVLVPAFMISELRRGFEIGFLI 191

		           QP REFM+ Q R+ DL LF  LA+    +  +   V  R+L+PA++ SEL+  F+IGF I

		Sbjct: 132 QPLREFMLRQTREADLGLFARLANTGPLQGPEA--VPMRILLPAYVTSELKTAFQIGFTI 189

		

		Query: 192 VLPFLVIDLVVATLTMSMGMMMLPPTVISLPFKILFFVLIDGWNILVGSLIRSF 245

		            +PFL+IDLV+A++ M++GMMM+PP  I+LPFK++ FVL+DGW +LVGSL +SF

		Sbjct: 190 FIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243

		

		

		>BINARYTOXINB#Binary toxin B family signature.

		          Length = 764

		

		 Score = 35.4 bits (81), Expect = 0.001

		 Identities = 37/203 (18%), Positives = 71/203 (34%), Gaps = 31/203 (15%)

		

		Query: 247 VMALNTEIVAATGAVSTAQARLQTAQALKNNNEAPAM--------------TEILASPAI 292

		           +MAL+T +V++TG +   QA ++    L N +E+ +                 ++ S   

		Sbjct: 10  LMALSTILVSSTGNLEVIQAEVKQENRLLNESESSSQGLLGYYFSDLNFQAPMVVTSSTT 69

		

		Query: 293 QNLRNEEARVQRHLDELKANGALKSAEIPVLMAERESLKQQITAQVDEIIKSLS--NEIR 350

		            +L    + ++    E   N   +SA     +            + DE   + S  N + 

		Sbjct: 70  GDLSIPSSELENIPSE---NQYFQSAIWSGFI---------KVKKSDEYTFATSADNHVT 117

		

		Query: 351 IAVQRRTSLEKELKEAETDLAKANQAQVRAAQLDR---EANASRVVYETYLTRYKQLIEQ 407

		           + V  +  + K     +  L K    Q++         E      +Y T     K++I  

		Sbjct: 118 MWVDDQEVINKASNSNKIRLEKGRLYQIKIQYQRENPTEKGLDFKLYWTDSQNKKEVISS 177

		

		Query: 408 DGIAIPEAQLISQAEPAMAKASP 430

		           D + +PE +  S         S 

		Sbjct: 178 DNLQLPELKQKSSNSRKKRSTSA 200

		

		

		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

		           signature.

		          Length = 478

		

		 Score = 74.1 bits (182), Expect = 2e-16

		 Identities = 25/213 (11%), Positives = 73/213 (34%), Gaps = 7/213 (3%)

		

		Query: 151 VTAGMQLI-----SAQQEYADLQMQITAQTIRRARFEAELKGTDFTYAVPEQTAANKDMV 205

		           V  G  L+      A+ +    Q  +    + + R++   +  +       +        

		Sbjct: 118 VRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQ 177

		

		Query: 206 ALTRHMVEGERTLFNVRRNNLAAERRALEAQAASYGDEITTLQQSIKLHDTEIQLLQENV 265

		            ++   V    +L   + +    ++   E        E  T+   I  ++   ++ +  +

		Sbjct: 178 NVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRL 237

		

		Query: 266 NSSKSLVDRGLAAKSSLRDMERDLSSTRRDALELASFLARARQNQLAVEQRIANLDETRR 325

		           +   SL+ +   AK ++ + E        +     S L +     L+ ++    + +  +

		Sbjct: 238 DDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFK 297

		

		Query: 326 SEAASSLQEIDLNMA--RMQRRSNSQLEAMAEI 356

		           +E    L++   N+    ++   N + +  + I

		Sbjct: 298 NEILDKLRQTTDNIGLLTLELAKNEERQQASVI 330

		

		

		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

		          Length = 334

		

		 Score = 79.8 bits (197), Expect = 4e-19

		 Identities = 71/352 (20%), Positives = 130/352 (36%), Gaps = 72/352 (20%)

		

		Query: 19  KIFVAGHTGMVGSAILRRLQHED-----CDIITAAHSVL-------------------DL 54

		           K  V G  G +G  + +RL          D +   + V                    DL

		Sbjct: 2   KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61

		

		Query: 55  T-RQGPTENFISGHRPDVIIIAAARVGGILANSRFPADFLYDNLAIGMNLIHAAHQIGVE 113

		             R+G T+ F SGH  + + I+  R   +  +   P  +   NL   +N++       ++

		Sbjct: 62  ADREGMTDLFASGH-FERVFISPHR-LAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQ 119

		

		Query: 114 RLLWLGSSCIYPRDAAQPLTEDALLTGPLEPTNEAYAIAKIAGLKYAQSCARQF-----G 168

		            LL+  SS +Y  +   P + D  +  P+      YA  K A    A + +  +     G

		Sbjct: 120 HLLYASSSSVYGLNRKMPFSTDDSVDHPVSL----YAATKKANELMAHTYSHLYGLPATG 175

		

		Query: 169 DRFITAMPTNLYGPNDNFDPTSSHVLPALIRRVHEARMRGAEEVVLWGSGKPLREFLHVD 228

		            RF T     +YGP    D      L    + + E      + + ++  GK  R+F ++D

		Sbjct: 176 LRFFT-----VYGPWGRPD----MALFKFTKAMLE-----GKSIDVYNYGKMKRDFTYID 221

		

		Query: 229 DLADACLHLL------------------RFYNGIEPVNIGSGEEISIKELALTVARIVGY 270

		           D+A+A + L                            NIG+   + + +    +   +G 

		Sbjct: 222 DIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGI 281

		

		Query: 271 EGRFEHDLSKPDGTPRKLLDTSRI-EALGWQPRIRLEDGLR---DVYRNWLE 318

		           E +      +P        DT  + E +G+ P   ++DG++   + YR++ +

		Sbjct: 282 EAKKNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDFYK 333

		

		

		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

		          Length = 334

		

		 Score = 87.1 bits (216), Expect = 2e-21

		 Identities = 72/362 (19%), Positives = 126/362 (34%), Gaps = 66/362 (18%)

		

		Query: 7   LIVGVTGQDGAYLSELLLGKGYRVHGLKRRSSSFNTARIDHLYQDPHEEDIR-------- 58

		           L+ G  G  G ++S+ LL  G++V G+     + N       Y D   +  R        

		Sbjct: 4   LVTGAAGFIGFHVSKRLLEAGHQVVGI----DNLND------YYDVSLKQARLELLAQPG 53

		

		Query: 59  FRLHFGDLTDATNLCRVIQEVQPDEIYNLGAQSHVQVSFETPEYTANADALGTLRLLESM 118

		           F+ H  DL D   +  +      + ++    +  V+ S E P   A+++  G L +LE  

		Sbjct: 54  FQFHKIDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGC 113

		

		Query: 119 RILGLGKSCCFYQASTSELFGNSSHHAQNEQTPFA-------PRSPYATAKLYAYWTTVN 171

		           R   +        AS+S ++G       N + PF+       P S YA  K         

		Sbjct: 114 RHNKIQH---LLYASSSSVYGL------NRKMPFSTDDSVDHPVSLYAATKKANELMAHT 164

		

		Query: 172 YRDAYGFHASNGILFNHESPLRGETFVTRKITRAVA---AIERGLQDRLRLGNLEARRDW 228

		           Y   YG  A+    F    P         K T+A+    +I+            + +RD+

		Sbjct: 165 YSHLYGLPATGLRFFTVYGPWGRPDMALFKFTKAMLEGKSID-------VYNYGKMKRDF 217

		

		Query: 229 GHARDYVEGMWRILQEDTPDDYVLATGETHTVREFIEHAFKAVDKQIVWHGDG------- 281

		            +  D  E + R+         V+   +T    E    A      ++   G+        

		Sbjct: 218 TYIDDIAEAIIRLQD-------VIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMD 270

		

		Query: 282 -VDEVGIDRKTGNCLIEIDPRY--FRPNEVDFLMGDASKAKDRLGWQHTTGFENLVAEMV 338

		            +    ++   G   IE        +P +V     D     + +G+   T  ++ V   V

		Sbjct: 271 YIQA--LEDALG---IEAKKNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFV 325

		

		Query: 339 DW 340

		           +W

		Sbjct: 326 NW 327

		

		

		>OMPADOMAIN#OMPA domain signature.

		          Length = 346

		

		 Score = 48.0 bits (114), Expect = 1e-08

		 Identities = 52/246 (21%), Positives = 84/246 (34%), Gaps = 67/246 (27%)

		

		Query: 3   SVILASIAAMFATSAMAADVVVSEPSAPTAAPVDTFSWTGGYIGINAGYAGGKFKHPFSS 62

		           ++ +A   A FAT A              AAP D   +TG  +G  + Y    F +    

		Sbjct: 5   AIAIAVALAGFATVA-------------QAAPKDNTWYTGAKLG-WSQYHDTGFINNNGP 50

		

		Query: 63  FDKEDIEQVSGSLDVTAGGFVG-------GVQAGYNWQLDNGVVLGAETDFQGSSVTGSI 115

		             +           + AG F G       G + GY+W       LG    ++GS   G+ 

		Sbjct: 51  THENQ---------LGAGAFGGYQVNPYVGFEMGYDW-------LGRMP-YKGSVENGAY 93

		

		Query: 116 SAGASGLEGKAETKVEWFGTVRARLGYTATERLMVYGTGGLAYGKVKSAFNLGDDASALH 175

		            A    L  K              LGY  T+ L +Y   G    +  +  N+        

		Sbjct: 94  KAQGVQLTAK--------------LGYPITDDLDIYTRLGGMVWRADTKSNVYGKN---- 135

		

		Query: 176 TWPDKTKAGWTLGAGAEYAINNNWTLKSEYLYT-DLGKRNLVDVDNSFLESKVNFHTVRV 234

		                T        G EYAI      + EY +T ++G  + +         + +   + +

		Sbjct: 136 ---HDTGVSPVFAGGVEYAITPEIATRLEYQWTNNIGDAHTIGT-------RPDNGMLSL 185

		

		Query: 235 GLNYKF 240

		           G++Y+F

		Sbjct: 186 GVSYRF 191

		

		

		>HTHTETR#TetR bacterial regulatory protein HTH signature.

		          Length = 215

		

		 Score = 71.6 bits (175), Expect = 2e-17

		 Identities = 29/179 (16%), Positives = 60/179 (33%), Gaps = 13/179 (7%)

		

		Query: 9   PPQASLSSEQTRKALIVAALRLFGAKGYEATSTREIASLAKANIGSIAYHFGGKEGLRLA 68

		             +    +++TR+ ++  ALRLF  +G  +TS  EIA  A    G+I +HF  K  L   

		Sbjct: 2   ARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61

		

		Query: 69  AADYIVETFRLIAAQALGNFQPAGFSREEREDARAQMISALERMVHFIVARPETGEIVQF 128

		             +        +  +    F           D  + +   L  ++   V       +++ 

		Sbjct: 62  IWELSESNIGELELEYQAKF---------PGDPLSVLREILIHVLESTVTEERRRLLMEI 112

		

		Query: 129 LLRELAHPTAA--LDRIYKGVFEPVHKRLCMIWEAA--TGEAAESEATRLVVFTLVGQI 183

		           +  +         + +  + +    + R+    +             TR     + G I

		Sbjct: 113 IFHKCEFVGEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYI 171

		

		

		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

		           signature.

		          Length = 478

		

		 Score = 59.5 bits (144), Expect = 5e-12

		 Identities = 21/131 (16%), Positives = 47/131 (35%), Gaps = 5/131 (3%)

		

		Query: 27  VEGEFVQLAPLQVAQVRDIAVKRGDRVEAGEPIATVEDTDARIAVAQAEAALAQAQAQLA 86

		             G   ++ P++ + V++I VK G+ V  G+ +  +    A     + +++L QA+ +  

		Sbjct: 92  HSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQT 151

		

		Query: 87  NLQVGKRPEEIAVLEAAVRSARAQADDAQRTLLRTRDLARRGVATQAQLDDAATQLEVAE 146

		             Q+         +E          D+     +   ++ R     + Q      Q    E

		Sbjct: 152 RYQI-----LSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKE 206

		

		Query: 147 AAIRQSTANLA 157

		             + +  A   

		Sbjct: 207 LNLDKKRAERL 217

		

		

		

		 Score = 44.8 bits (106), Expect = 2e-07

		 Identities = 27/257 (10%), Positives = 80/257 (31%), Gaps = 25/257 (9%)

		

		Query: 67  ARIAVAQAEAALAQAQAQLANLQVGKRPEEIAVLEAAVR---SARAQADDAQRTLLR-TR 122

		             +   +AE     A+              +    + +     A+    + +   +    

		Sbjct: 207 LNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVN 266

		

		Query: 123 DLARRGVATQAQLDDAATQLEVAEAAIRQSTANLAVGKLPARPEEIKAVENAVKSAKAQL 182

		           +L       ++QL+   +++  A+   +  T       L    ++++   + +     +L

		Sbjct: 267 ELR----VYKSQLEQIESEILSAKEEYQLVTQLFKNEIL----DKLRQTTDNIGLLTLEL 318

		

		Query: 183 QTAKWQRAQRTIEAPAAGRITDV-VRNPGDIAGPSAPVLTMLPDGAVKL-KVNIPEERFS 240

		              + ++    I AP + ++  + V   G +   +  ++ ++P+         +  +   

		Sbjct: 319 AKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIG 378

		

		Query: 241 DVAVGSVLSVHCDG----CAPGLQARVSYVSPD---PEFTPPVIYSLETRQKLVYLVEAH 293

		            + VG    +  +         L  +V  ++ D    +    V   +         +   

		Sbjct: 379 FINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVI--ISIEENCLSTG 436

		

		Query: 294 PVDPASPLQPGQIVDVD 310

		             +   PL  G  V  +

		Sbjct: 437 --NKNIPLSSGMAVTAE 451

		

		

		>ABC2TRNSPORT#ABC-2 type transport system membrane protein

		           signature.

		          Length = 262

		

		 Score = 46.1 bits (109), Expect = 8e-08

		 Identities = 40/172 (23%), Positives = 72/172 (41%), Gaps = 4/172 (2%)

		

		Query: 206 ALTRETERGTMENLLAMPATPAEIMLGKILPYLAVGGVQMVVVLVAAKLIFSVPFVGSLT 265

		           A  R   + T E +L       +I+LG++        +    + V A  +    ++ SL 

		Sbjct: 90  AFGRMEGQRTWEAMLYTQLRLGDIVLGEMAWAATKAALAGAGIGVVAAALGYTQWL-SLL 148

		

		Query: 266 LLLSSVLIFVLSLVLLGYTISTVSRTQMQAMQLTFFFFLPSLMLSGFMFPFRGMPDWAQA 325

		             L  + +  L+   LG  ++ ++ +    +        P L LSG +FP   +P   Q 

		Sbjct: 149 YALPVIALTGLAFASLGMVVTALAPSYDYFIFYQTLVITPILFLSGAVFPVDQLPIVFQT 208

		

		Query: 326 LGNIFPLTYFLRIVRAVMLKGAGLADIAGEVMALILF--VFLFAGLALLRFR 375

		                PL++ + ++R +ML      D+   V AL ++  +  F   ALLR R

		Sbjct: 209 AARFLPLSHSIDLIRPIMLGHPV-VDVCQHVGALCIYIVIPFFLSTALLRRR 259

		

		

		>PF05272#Virulence-associated E family protein

		          Length = 892

		

		 Score = 28.5 bits (63), Expect = 0.035

		 Identities = 11/20 (55%), Positives = 13/20 (65%)

		

		Query: 33  LIGPSGCGKSTLLRFLGGLE 52

		           L G  G GKSTL+  L GL+

		Sbjct: 601 LEGTGGIGKSTLINTLVGLD 620

		

		

		>TCRTETB#Tetracycline resistance protein TetB signature.

		          Length = 458

		

		 Score = 40.2 bits (94), Expect = 2e-05

		 Identities = 36/200 (18%), Positives = 71/200 (35%), Gaps = 12/200 (6%)

		

		Query: 57  IQGSLGATLTETTWLVAAYMAPFASLTILLLKIRTQFGLRRFAEVAIAVFLVASLLHLLV 116

		           I          T W+  A+M  F+  T +  K+  Q G++R     I +    S++  + 

		Sbjct: 40  IANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVG 99

		

		Query: 117 YDVWS-AIPVRFI--AGAAAVPISSVGFLYMLEAFPPDKKRTWGLSLALTCSGAAGPFAR 173

		           +  +S  I  RFI  AGAAA P   +    ++  + P + R     L  +          

		Sbjct: 100 HSFFSLLIMARFIQGAGAAAFPALVMV---VVARYIPKENRGKAFGLIGSIVAMGEGVGP 156

		

		Query: 174 IISPMLFDIGQWQQLYMLEIGLALACFAVVYVLPLTQIPRAKVLHWLDFVAYTFIAIGFG 233

		            I  M+     W  L ++ +   +    ++ +L        ++    D      +++G  

		Sbjct: 157 AIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLK----KEVRIKGHFDIKGIILMSVGI- 211

		

		Query: 234 ALVVVLVQGKNYWWFEAPWI 253

		            +  +L        F    +

		Sbjct: 212 -VFFMLFTTSYSISFLIVSV 230

		

		

		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

		           signature.

		          Length = 478

		

		 Score =  101 bits (252), Expect = 8e-26

		 Identities = 63/414 (15%), Positives = 130/414 (31%), Gaps = 85/414 (20%)

		

		Query: 3   VSKKYIRGGFAILIGLLGVFIILWAWQLPPFKHSVETTDNAYVRGQVTVMSPQVSGYITK 62

		           VS++     + I+  L+  F  + +  L   +            G+   + P  +  + +

		Sbjct: 53  VSRRPRLVAYFIMGFLVIAF--ILSV-LGQVEIVATANGKLTHSGRSKEIKPIENSIVKE 109

		

		Query: 63  VNVTDYEQVKKGDLLFEID------------SRSYQQKLDQA------------------ 92

		           + V + E V+KGD+L ++             S   Q +L+Q                   

		Sbjct: 110 IIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELK 169

		

		Query: 93  ----------------------LAALDSKKAALANSEQSQRSAEATIKAREAQISGAKAA 130

		                                      + +      E +     A      A+I+  +  

		Sbjct: 170 LPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENL 229

		

		Query: 131 LEVAKANTVRVDALLPRG-------VTTQSSADTAHGNMLQAQAAVDQAEAALAVAKEDL 183

		             V K+      +LL +        +  ++    A   +   ++ ++Q E+ +  AKE+ 

		Sbjct: 230 SRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEY 289

		

		Query: 184 --------RTIIVAREGLNADLHNAEAAVALARIDLQNTKILAPRDGKLGEVGVR-LGQY 234

		                     I+        ++      +A      Q + I AP   K+ ++ V   G  

		Sbjct: 290 QLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGV 349

		

		Query: 235 VTAGTQLVSLVP--AVKWIMANFKETQLYGMKVGQPVTLTVDAL---RHAELKGHIEAFS 289

		           VT    L+ +VP      + A  +   +  + VGQ   + V+A    R+  L G ++  +

		Sbjct: 350 VTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNIN 409

		

		Query: 290 PATGSEFSVIKSDNATGNFTKITQRLSVRISIDEGQPDAELLAPGMSVVLRVDT 343

		                       D   G    +   +         +     L+ GM+V   + T

		Sbjct: 410 LDA-------IEDQRLGLVFNVIISIEENCLSTGNKN--IPLSSGMAVTAEIKT 454

		

		

		>PF06580#Sensor histidine kinase

		          Length = 349

		

		 Score = 35.6 bits (82), Expect = 4e-04

		 Identities = 21/104 (20%), Positives = 40/104 (38%), Gaps = 25/104 (24%)

		

		Query: 373 LIDNALAYG-------GKVRLSLHRDGDDLLLRIKDNGPGISPERIEEMFKPFSRADKSR 425

		           L++N + +G       GK+ L   +D   + L +++ G                      

		Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKN---------------- 306

		

		Query: 426 NRESGGFGLGLTIARNIARKNGGEISLR-NDPAGGLIAELRLPG 468

		            +ES G GL     R +    G E  ++ ++  G + A + +PG

		Sbjct: 307 TKESTGTGLQNVRER-LQMLYGTEAQIKLSEKQGKVNAMVLIPG 349

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 94.5 bits (235), Expect = 1e-24

		 Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 3/137 (2%)

		

		Query: 5   AHILIVDDDKDIRDLLHEFLKRRGMHVSIACNGDEMLDVLSRTPIDLVILDVMLPGKSGI 64

		           A IL+ DDD  IR +L++ L R G  V I  N   +   ++    DLV+ DV++P ++  

		Sbjct: 4   ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63

		

		Query: 65  EICQDVR-RTSRVPIIMLTAIADAADKILGLEIGADDYIAKPFDPRELLARIRAVLRRFE 123

		           ++   ++     +P+++++A       I   E GA DY+ KPFD  EL+  I   L   +

		Sbjct: 64  DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123

		

		Query: 124 GNRSPQRALTQIYRFAG 140

		             R P +          

		Sbjct: 124 --RRPSKLEDDSQDGMP 138

		

		

		>PF06580#Sensor histidine kinase

		          Length = 349

		

		 Score = 33.3 bits (76), Expect = 0.001

		 Identities = 13/84 (15%), Positives = 36/84 (42%), Gaps = 1/84 (1%)

		

		Query: 40  GAFAMIGGYFASYAAQQLGLNYGFAIIIAVVGTMIIAVPVERLLYRRIYGAPELTQVLMT 99

		           G + + G  FAS        +  F I I+++G  ++       + R+ +    + Q+++ 

		Sbjct: 21  GVYTLTGFGFASLYGSPKLHSMIFNIAISLMGL-VLTHAYRSFIKRQGWLKLNMGQIILR 79

		

		Query: 100 IGVTFCIIGITNYIFGPTLKTIPL 123

		           +     +IG+  ++   ++  +  

		Sbjct: 80  VLPACVVIGMVWFVANTSIWRLLA 103

		

		

		>SSPANPROTEIN#Salmonella invasion protein InvJ signature.

		          Length = 336

		

		 Score = 28.2 bits (62), Expect = 0.031

		 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 11/86 (12%)

		

		Query: 68  NIATLPSAARALAGLGY----VPQTRDIFPTLTVEENLFVGLKNRPKDALEEAYAMFPRL 123

		           NI  LP   +A+AG G      P  RD+ P      N       +P+D   +      +L

		Sbjct: 163 NIKALPGDNKAIAGEGVRKEGAPLARDVAPARMAAANT-----GKPEDKDHKKVKDVSQL 217

		

		Query: 124 KERRRNLG--SQLSGGEQQMLSTARS 147

		             +   +   SQL+GG+++M   A+S

		Sbjct: 218 PLQPTTIADLSQLTGGDEKMPLAAQS 243

		

		

		>UREASE#Urea amidohydrolase (urease) protein signature.

		          Length = 570

		

		 Score = 34.3 bits (79), Expect = 0.001

		 Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 12/84 (14%)

		

		Query: 65  ADIVLKGGRFLDLITGELVESDIAICEDRIVGTFGTYRGKHEIDVSGRIVVPGFIDTHLH 124

		           ADI LK GR   +  G+    D+      IVG      G   I   G+IV  G +D+H+H

		Sbjct: 86  ADIGLKDGRIAAI--GKAGNPDMQPGVTIIVGP-----GTEVIAGEGKIVTAGGMDSHIH 138

		

		Query: 125 IESSQVTPHEFDRCLLPQGVTTAI 148

		               Q          L  G+T  +

		Sbjct: 139 FICPQQIEEA-----LMSGLTCML 157

		

		

		>PF05272#Virulence-associated E family protein

		          Length = 892

		

		 Score = 35.8 bits (82), Expect = 3e-04

		 Identities = 14/33 (42%), Positives = 18/33 (54%)

		

		Query: 33  VVLVGPSGCGKSTLLRMIAGLESITSGTISIGE 65

		           VVL G  G GKSTL+  + GL+  +     IG 

		Sbjct: 599 VVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGT 631

		

		

		>ALARACEMASE#Alanine racemase signature.

		          Length = 356

		

		 Score = 47.8 bits (114), Expect = 2e-08

		 Identities = 38/220 (17%), Positives = 74/220 (33%), Gaps = 21/220 (9%)

		

		Query: 18  VDVDRVVANIEKAQAHADAAGVKLRPHIKT----HKLPFFARMQVKAGAVGITCQKLGEA 73

		           +D+  +  N+   +  A  A  ++   +K     H +              +    L EA

		Sbjct: 9   LDLQALKQNLSIVRQAATHA--RVWSVVKANAYGHGIERIWSAIGATDGFALLN--LEEA 64

		

		Query: 74  EVMADAGLTD-IFLPYNILGQEKLDRLHALHRRITISVTVDNKTSLAGLAQHFMNEKRPL 132

		             + + G    I +       + L+          ++  V +   L  L       K PL

		Sbjct: 65  ITLRERGWKGPILMLEGFFHAQDLEIYDQHR----LTTCVHSNWQLKALQN--ARLKAPL 118

		

		Query: 133 KVLVECDTGMGRCGVQTPGQARELAHIIEKSAGLCFGGLMTYPATGRGDEAERWLREARD 192

		            + ++ ++GM R G Q P +   +   +   A +    LM++ A    +  +        

		Sbjct: 119 DIYLKVNSGMNRLGFQ-PDRVLTVWQQLRAMANVGEMTLMSHFAE--AEHPDGISGAMAR 175

		

		Query: 193 LLAA-DGIACETISSGGTPDMWRIPAETVVTEYRPGTYIY 231

		           +  A +G+ C    S     +W   A       RPG  +Y

		Sbjct: 176 IEQAAEGLECRRSLSNSAATLWHPEAHF--DWVRPGIILY 213

		

		

		>PF05272#Virulence-associated E family protein

		          Length = 892

		

		 Score = 33.5 bits (76), Expect = 0.001

		 Identities = 14/32 (43%), Positives = 18/32 (56%)

		

		Query: 32  LVLVGPSGCGKSTLLRMVAGLEPISGGDLVIG 63

		           +VL G  G GKSTL+  + GL+  S     IG

		Sbjct: 599 VVLEGTGGIGKSTLINTLVGLDFFSDTHFDIG 630

		

		

		>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase

		           signature.

		          Length = 261

		

		 Score = 96.7 bits (240), Expect = 4e-26

		 Identities = 72/253 (28%), Positives = 113/253 (44%), Gaps = 16/253 (6%)

		

		Query: 9   GRSVLVTGAGGGLGRALAALFAARGARVIGCD--------VSMDLMAASDFASRHVFDLL 60

		           G+   +TGA  G+G A+A   A++GA +   D        V   L A +  A     D+ 

		Sbjct: 8   GKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVR 67

		

		Query: 61  DRAELAAAANKLILADGVPDIVINNAGWTRAETFEGLEQDRIEVEIDLNLTGVASFSNIM 120

		           D A +     ++    G  DI++N AG  R      L  +  E    +N TGV + S  +

		Sbjct: 68  DSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSV 127

		

		Query: 121 AQAMATRGHGAFVFV-SSVNSLQHFGNPAYAAAKAGINAFARGIAVEFGQRGVRANVVCP 179

		           ++ M  R  G+ V V S+   +      AYA++KA    F + + +E  +  +R N+V P

		Sbjct: 128 SKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSP 187

		

		Query: 180 GSIRTPA----WDHRIAQDPSV---LDRLQRLYPLGRIVNVGEVAEAVAFLASERASGIT 232

		           GS  T      W      +  +   L+  +   PL ++    ++A+AV FL S +A  IT

		Sbjct: 188 GSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHIT 247

		

		Query: 233 GAVLPVDAGLTAG 245

		              L VD G T G

		Sbjct: 248 MHNLCVDGGATLG 260

		

		

		>MALTOSEBP#Maltose binding protein signature.

		          Length = 396

		

		 Score = 45.1 bits (106), Expect = 3e-07

		 Identities = 65/282 (23%), Positives = 102/282 (36%), Gaps = 19/282 (6%)

		

		Query: 128 DGKTYGLPIAASARAMYYNKDLFEKAGIKNPPANWDELKADAAKIKALGGENYGFGLQGK 187

		           +GK    PIA  A ++ YNKDL     + NPP  W+E+ A   ++KA G     F LQ  

		Sbjct: 126 NGKLIAYPIAVEALSLIYNKDL-----LPNPPKTWEEIPALDKELKAKGKSALMFNLQEP 180

		

		Query: 188 E-----IETDVYYYYAMWSYGTEILNKDGTSGLSTPGALEAAKLYKSMIDDGLTQPGVTS 242

		                 I  D  Y +   +   +I +     G+   GA         +I +       T 

		Sbjct: 181 YFTWPLIAADGGYAFKYENGKYDIKD----VGVDNAGAKAGLTFLVDLIKNKHMNAD-TD 235

		

		Query: 243 YAREDVQNLFKQGKVGMMITAPFLSNQIKEEAPNLKYGVAAIPAGPTGARGTYGVTDSVI 302

		           Y+  +    F +G+  M I  P+  + I     N  YGV  +P         +    S  

		Sbjct: 236 YSIAEAA--FNKGETAMTINGPWAWSNIDTSKVN--YGVTVLPTFKGQPSKPFVGVLSAG 291

		

		Query: 303 MFQNSKNKEEAWKVLDFLFQKDWRAKFTQNEGFLPVNKEEAKMDYYVNNADLAAFTALLP 362

		           +   S NKE A + L+     D   +    +  L     ++  +    +  +AA      

		Sbjct: 292 INAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQ 351

		

		Query: 363 DARFAPVIPGWEEIADITSNAMQSIYLGKGEPDAVLKDAAAK 404

		                P IP           A+ +   G+   D  LKDA  +

		Sbjct: 352 KGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEALKDAQTR 393

		

		

		>ACRIFLAVINRP#Acriflavin resistance protein family signature.

		          Length = 1034

		

		 Score =  463 bits (1193), Expect = e-148

		 Identities = 229/1045 (21%), Positives = 434/1045 (41%), Gaps = 65/1045 (6%)

		

		Query: 7    LSDWALNHRSLVWYFMLVFLVAGLVSYLDLGREEDPEFTVKTMVVQANWPGASIDETLNQ 66

		            ++++ +      W   ++ ++AG ++ L L   + P      + V AN+PGA      + 

		Sbjct: 1    MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60

		

		Query: 67   VTDRLEKKLEELDTLDYTRSVTT-AGKSVVFVFLKDTTRAQDVKKSWTEVRHLLTDIQNT 125

		            VT  +E+ +  +D L Y  S +  AG   + +  +  T   D   +  +V++ L      

		Sbjct: 61   VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGT---DPDIAQVQVQNKLQLATPL 117

		

		Query: 126  LPQGVYGPY-FNDQFGDVFGNIYAFTADGLSMRQ--LRDYAED-VRTKILTIPNAGKVEL 181

		            LPQ V       ++    +  +  F +D     Q  + DY    V+  +  +   G V+L

		Sbjct: 118  LPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQL 177

		

		Query: 182  IGAQDEAIYLEFSTRQVAALGLDQQAILKALQDQNAITPSGVVQAGPEG------ISVRV 235

		             GAQ  A+ +      +    L    ++  L+ QN    +G +   P         S+  

		Sbjct: 178  FGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIA 236

		

		Query: 236  SGQFNSEADLRAVNLRVNN--RFFRLSDVATITRGYVDPPTSIFRVNGEDAIGLGIGMKP 293

		              +F +  +   V LRVN+     RL DVA +  G  +    I R+NG+ A GLGI +  

		Sbjct: 237  QTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELG-GENYNVIARINGKPAAGLGIKLAT 295

		

		Query: 294  NGNLLEFGAELDKMMDQVTAELPVGVKVFKVADQPQVVKEAVSGFTQALFEAMVIVLAVS 353

		              N L+    +   + ++    P G+KV    D    V+ ++    + LFEA+++V  V 

		Sbjct: 296  GANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVM 355

		

		Query: 354  FVSLG-LRAGFVVSLSIPLVLAITFLSMSLMDISLQRVSLGALIIALGLLVDDAMIAVEM 412

		            ++ L  +RA  + ++++P+VL  TF  ++    S+  +++  +++A+GLLVDDA++ VE 

		Sbjct: 356  YLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVEN 415

		

		Query: 413  MV-ARLEHGDPINKAATYVYSHTAFPMLTGTLVTIAGFIPIGLNNSQAGEYTFTLFVAIA 471

		            +    +E   P  +A     S     ++   +V  A FIP+       G       + I 

		Sbjct: 416  VERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIV 475

		

		Query: 472  VSLLVSWVVAVLFAPLLGVTFLPKKMKPHEEKRSRFFEAFSRVLLLSM-----------R 520

		             ++ +S +VA++  P L  T L      H E +  FF  F+     S+            

		Sbjct: 476  SAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILG 535

		

		Query: 521  HKWTTIITTIVLFVISVFGMGFIERQFFPQSDRPELVLDWTLPQNSSIADTKAQMERFEE 580

		                 ++   ++    V     +   F P+ D+   +    LP  ++   T+  +++  +

		Sbjct: 536  STGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTD 595

		

		Query: 581  TMLKDN-PDVEHWSTYVGQGAIRFVLSFDVLPANPYFGQMVVVARDVEARDRLKAKFEA- 638

		              LK+   +VE   T  G         F         G   V  +  E R+  +   EA 

		Sbjct: 596  YYLKNEKANVESVFTVNG---------FSFSGQAQNAGMAFVSLKPWEERNGDENSAEAV 646

		

		Query: 639  --AFRKDYVGTDVYVKYLELGPPV---GRPVQYRI-----SGPDVQKLRGIAQDFAGILS 688

		                + +              P +   G    +       +G     L        G+ +

		Sbjct: 647  IHRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAA 706

		

		Query: 689  -ADKRLGVVNYNWNEPGRVIRVDVMQDKARKLGISSKDIATTLNGVVGGITITQVRDSIY 747

		                 L  V  N  E     +++V Q+KA+ LG+S  DI  T++  +GG  +    D   

		Sbjct: 707  QHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGR 766

		

		Query: 748  LIDVIARAQAHERDSIDTLQSLQIATGNGTSVPLAAIANFRYELEQPVIYRRSRIPTITV 807

		            +  +  +A A  R   + +  L + + NG  VP +A     +    P + R + +P++ +

		Sbjct: 767  VKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEI 826

		

		Query: 808  AAGIIDKTMPDTIARDLGPAIKTFADRLPAGYYIQTAGTVEESGKSQGPIAAVVPLMLFV 867

		                     P T + D    ++  A +LPAG      G   +   S     A+V +   V

		Sbjct: 827  QGEA----APGTSSGDAMALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVV 882

		

		Query: 868  MATVLMVQLQSFQRLFLVVAVAPLGLIGVVAALLPSGKPLGLVAILGVLALIGILIRNSV 927

		            +   L    +S+     V+ V PLG++GV+ A     +   +  ++G+L  IG+  +N++

		Sbjct: 883  VFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAI 942

		

		Query: 928  ILIVQVEE-DIQEGLHPWDAVMKASQHRMRPIALTAAAASLALIPIA------REVFWGP 980

		            +++   ++   +EG    +A + A + R+RPI +T+ A  L ++P+A             

		Sbjct: 943  LIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQN-A 1001

		

		Query: 981  MAYAMMGGIIAGTAITLLFLPALYV 1005

		            +   +MGG+++ T + + F+P  +V

		Sbjct: 1002 VGIGVMGGMVSATLLAIFFVPVFFV 1026

		

		

		

		 Score = 96.4 bits (240), Expect = 3e-22

		 Identities = 90/509 (17%), Positives = 174/509 (34%), Gaps = 38/509 (7%)

		

		Query: 10   WALNHRSLVWYFMLVFLVAGLVSYLDLGREEDPEFTVKTMVVQANWP-GASIDET---LN 65

		              L           + +   +V +L L     PE      +     P GA+ + T   L+

		Sbjct: 532  KILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLD 591

		

		Query: 66   QVTDRLEKKLEELDTLDYTRS-VTTAGKSV----VFVFLKDTTRAQDVKKSWTEVRHLLT 120

		            QVTD   K  +      +T +  + +G++      FV LK        + S   V H   

		Sbjct: 592  QVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAK 651

		

		Query: 121  DIQNTLPQGVYGPYFNDQFGDVFGNIYAFTADGLSMR-QLRDYAEDVRTKILTIPNAGKV 179

		                 +  G   P FN       G    F  + +       D     R ++L +      

		Sbjct: 652  MELGKIRDGFVIP-FNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPA 710

		

		Query: 180  ELIGAQDEA------IYLEFSTRQVAALGLDQQAILKALQDQNAITPSGVVQAGPEGISV 233

		             L+  +           LE    +  ALG+    I + +    A+  + V      G   

		Sbjct: 711  SLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTIS--TALGGTYVNDFIDRGRVK 768

		

		Query: 234  RVSGQF-----NSEADLRAVNLRVNN-RFFRLSDVATITRGYVDPPTSIFRVNGEDAIGL 287

		            ++  Q          D+  + +R  N      S   T    Y      + R NG  ++ +

		Sbjct: 769  KLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVY--GSPRLERYNGLPSMEI 826

		

		Query: 288  GIGMKPNGNLLEFGAELDKMMDQVTAELPVGVKVFKVADQPQVVKEAVSGFTQALFEAMV 347

		                 P  +  +  A ++ +  +    LP G+  +         + + +     +  + V

		Sbjct: 827  QGEAAPGTSSGDAMALMENLASK----LPAGIG-YDWTGMSYQERLSGNQAPALVAISFV 881

		

		Query: 348  IV---LAVSFVSLGLRAGFVVSLSIPLVLAITFLSMSLMDISLQRVSLGALIIALGLLVD 404

		            +V   LA  + S        V L +PL +    L+ +L +       +  L+  +GL   

		Sbjct: 882  VVFLCLAALYESW--SIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAK 939

		

		Query: 405  DAMIAVEMMVARLEH-GDPINKAATYVYSHTAFPMLTGTLVTIAGFIPIGLNNSQAGEYT 463

		            +A++ VE     +E  G  + +A          P+L  +L  I G +P+ ++N       

		Sbjct: 940  NAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQ 999

		

		Query: 464  FTLFVAIAVSLLVSWVVAVLFAPLLGVTF 492

		              + + +   ++ + ++A+ F P+  V  

		Sbjct: 1000 NAVGIGVMGGMVSATLLAIFFVPVFFVVI 1028

		

		

		

		 Score = 75.6 bits (186), Expect = 7e-16

		 Identities = 82/524 (15%), Positives = 173/524 (33%), Gaps = 44/524 (8%)

		

		Query: 517  LSMRHKWTTIITTIVLFVISVFGMGFIERQFFPQSDRPELVLDWTLPQNSSIADTKAQME 576

		              +R      +  I+L +     +  +    +P    P + +    P  +     +  + 

		Sbjct: 4    FFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYP-GADAQTVQDTVT 62

		

		Query: 577  RFEETMLKDNPDVEH-WSTYVGQGAIRFVLSFDVLPANPYFGQMVVVARDVEARDRLKAK 635

		            +  E  +    ++ +  ST    G++   L+F     +P   Q+ V  +   A   L  +

		Sbjct: 63   QVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQ-SGTDPDIAQVQVQNKLQLATPLLPQE 121

		

		Query: 636  FEAAFRKDYVGTDVYVKYLELGPPVGRPVQYRISGPDVQKLRGIAQDFA--GILSADKRL 693

		             +           + V+       +           +    +    D+    +     RL

		Sbjct: 122  VQQ--------QGISVEKSSSSYLM----VAGFVSDNPGTTQDDISDYVASNVKDTLSRL 169

		

		Query: 694  -GVVNYNWNEPGRVIRVDVMQDKARKLGISSKDIATTLNG----VVGGITITQVRDSIYL 748

		             GV +         +R+ +  D   K  ++  D+   L      +  G            

		Sbjct: 170  NGVGDVQLFGAQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQ 229

		

		Query: 749  IDVIARAQAHERDSIDTLQSLQIATGNGTSVPLAAIANFRYELEQPVIYRRSR-IPTITV 807

		            ++    AQ   ++  +  +       +G+ V L  +A      E   +  R    P   +

		Sbjct: 230  LNASIIAQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGL 289

		

		Query: 808  AAGIIDKTMPDTIARDLGPAIKTFADRLPAGYYIQ----TAGTVEESGKSQGPIAAVVPL 863

		               +         A+ +   +       P G  +     T   V+ S      I  VV  

		Sbjct: 290  GIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLS------IHEVVKT 343

		

		Query: 864  MLFVMATVLMVQ---LQSFQRLFLVVAVA-PLGLIGVVAALLPSGKPLGLVAILGVLALI 919

		            +   +  V +V    LQ+  R  L+  +A P+ L+G  A L   G  +  + + G++  I

		Sbjct: 344  LFEAIMLVFLVMYLFLQNM-RATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAI 402

		

		Query: 920  GILIRNSVILIVQVEEDIQE-GLHPWDAVMKASQHRMRPIALTAAAASLALIPIA----- 973

		            G+L+ ++++++  VE  + E  L P +A  K+       +   A   S   IP+A     

		Sbjct: 403  GLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGS 462

		

		Query: 974  REVFWGPMAYAMMGGIIAGTAITLLFLPALYVAWFRIKEPEHSP 1017

		                +   +  ++  +     + L+  PAL     +    EH  

		Sbjct: 463  TGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHE 506

		

		

		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

		           signature.

		          Length = 478

		

		 Score = 41.4 bits (97), Expect = 4e-06

		 Identities = 28/181 (15%), Positives = 61/181 (33%), Gaps = 16/181 (8%)

		

		Query: 102 ALDLAVQSARADLASAEAQYA--NASASEERQCILLRGNNVSQADYDAARQARDSAEAGL 159

		             +     A  +L   ++Q     +     ++   L          D  RQ  D+    +

		Sbjct: 256 EQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDN----I 311

		

		Query: 160 EKAQAGLRKAEEQRGYAVLRPDFDGVISATAA-EVGQVVSAGQAIVTVARPDVREAVVD- 217

		                 L K EE++  +V+R      +        G VV+  + ++ +  P+     V  

		Sbjct: 312 GLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIV-PEDDTLEVTA 370

		

		Query: 218 -IPDSMTEYFKPGTPFNVQLQADPSVKG---TGSVREVAPQADAQTRTR---RVRIALDN 270

		            + +    +   G    ++++A P  +     G V+ +   A    R      V I+++ 

		Sbjct: 371 LVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVIISIEE 430

		

		Query: 271 P 271

		            

		Sbjct: 431 N 431

		

		

		

		 Score = 37.9 bits (88), Expect = 5e-05

		 Identities = 16/90 (17%), Positives = 29/90 (32%), Gaps = 12/90 (13%)

		

		Query: 83  VKVGDLVKKGEMVAMLYPSALDLAVQSARADLASAEAQYANASASEERQCILLRGNNVSQ 142

		           VK G+ V+KG+++  L           A AD    ++    A   + R  IL R      

		Sbjct: 112 VKEGESVRKGDVLLKLTAL-------GAEADTLKTQSSLLQARLEQTRYQILSR-----S 159

		

		Query: 143 ADYDAARQARDSAEAGLEKAQAGLRKAEEQ 172

		            + +   + +   E   +            

		Sbjct: 160 IELNKLPELKLPDEPYFQNVSEEEVLRLTS 189

		

		

		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

		           signature.

		          Length = 478

		

		 Score = 61.4 bits (149), Expect = 2e-12

		 Identities = 39/190 (20%), Positives = 72/190 (37%), Gaps = 10/190 (5%)

		

		Query: 80  ERLVDIGQHVEKGQLLARIDDVEQRANMRVAQASMDAAEAQLVQADANFKRQQALLKQGF 139

		            RL D    + K   +A+   +EQ      A   +   ++QL Q ++     +   +   

		Sbjct: 235 SRLDDFSSLLHKQ-AIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQL-V 292

		

		Query: 140 TTRSQYDQADQALRTAQSALSSAQSQLGNARDELSYTELHAPVSGVVTARNIET-GQVVQ 198

		           T   + +  D+ LR     +     +L    +    + + APVS  V    + T G VV 

		Sbjct: 293 TQLFKNEILDK-LRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVT 351

		

		Query: 199 AAQTAFSIA-EDGSRDAIFDVQETLVNHARIGMGVTVALLADPSIEA---EGNIRELSP- 253

		            A+T   I  ED + +    VQ   +    +G    + + A P        G ++ ++  

		Sbjct: 352 TAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLD 411

		

		Query: 254 -VVDAQTGTV 262

		            + D + G V

		Sbjct: 412 AIEDQRLGLV 421

		

		

		

		 Score = 45.2 bits (107), Expect = 2e-07

		 Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 28/130 (21%)

		

		Query: 74  VNGQVVERLVDIGQHVEKGQLLARIDDVEQRANMRVAQASMDAAEAQLVQ---------- 123

		            N  V E +V  G+ V KG +L ++  +   A+    Q+S+  A  +  +          

		Sbjct: 103 ENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIEL 162

		

		Query: 124 -----------------ADANFKRQQALLKQGFTT-RSQYDQADQALRTAQSALSSAQSQ 165

		                            ++    R  +L+K+ F+T ++Q  Q +  L   ++   +  ++

		Sbjct: 163 NKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLAR 222

		

		Query: 166 LGNARDELSY 175

		           +    +    

		Sbjct: 223 INRYENLSRV 232

		

		

		>OUTRMMBRANEA#Outer membrane protein A signature.

		          Length = 346

		

		 Score = 28.0 bits (62), Expect = 0.042

		 Identities = 26/157 (16%), Positives = 49/157 (31%), Gaps = 39/157 (24%)

		

		Query: 90  ASYGVGVGYRFNDMLRTDLTLDYF-RASINGRTNCPSYVKSSHGLNPVEDNCHYEDNSKA 148

		              G   GY+ N  +  ++  D+  R    G     +Y   + G+            +K 

		Sbjct: 56  LGAGAFGGYQVNPYVGFEMGYDWLGRMPYKGSVENGAY--KAQGVQL---------TAKL 104

		

		Query: 149 SVWTAMANAYVDLPRVGPLTPYLGAGIGAAYVKYDTWKTSEICPTCTLQSDKDGFDSWRF 208

		                        P    L  Y    +G    + DT            +S+  G +    

		Sbjct: 105 G-----------YPITDDLDIY--TRLGGMVWRADT------------KSNVYGKNHDTG 139

		

		Query: 209 AMALMA-GVSYDLTDQLKLDLGYRYL-RVNGSNAYGY 243

		              + A GV Y +T ++   L Y++   +  ++  G 

		Sbjct: 140 VSPVFAGGVEYAITPEIATRLEYQWTNNIGDAHTIGT 176

		

		

		>ALARACEMASE#Alanine racemase signature.

		          Length = 356

		

		 Score =  253 bits (649), Expect = 9e-84

		 Identities = 105/368 (28%), Positives = 166/368 (45%), Gaps = 20/368 (5%)

		

		Query: 19  TIDLAALRHNYSAIATRIAPTRTAAVVKADAYGLGASRVAPAFYEAGCRDFFVAHLGEAV 78

		           ++DL AL+ N S +       R  +VVKA+AYG G  R+  A        F + +L EA+

		Sbjct: 8   SLDLQALKQNLSIVRQAATHARVWSVVKANAYGHGIERIWSAIGATDG--FALLNLEEAI 65

		

		Query: 79  ALKPFLKPDATLYVLNGLQPGTQAACAREGILPVLNSLEQVENWAALATRLGKKLPALLQ 138

		            L+        L +             +  +   ++S  Q++  A    RL   L   L+

		Sbjct: 66  TLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLK--ALQNARLKAPLDIYLK 123

		

		Query: 139 FDTGMSRLGLSAKEFDRLLENVTLLSRIDIKFAISHLANGDEPGNAANARQLAKMTALLA 198

		            ++GM+RLG        + + +  ++ +     +SH A  + P   +    +A++     

		Sbjct: 124 VNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISG--AMARIEQAAE 181

		

		Query: 199 RLPKLPAALANSGGTFLGKTYYFDLARPGIALYGIDPERQHDFSDKVAHENKKPKHSIL- 257

		            L     +L+NS  T      +FD  RPGI LYG  P          + + +   ++ L 

		Sbjct: 182 GLE-CRRSLSNSAATLWHPEAHFDWVRPGIILYGASP----------SGQWRDIANTGLR 230

		

		Query: 258 PVLTLSARVIQVRDVDKGATVGYGGTYVANGPMRIATIAVGYADGLFRSLSNKGAAFFGD 317

		           PV+TLS+ +I V+ +  G  VGYGG Y A    RI  +A GYADG  R            

		Sbjct: 231 PVMTLSSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHAPTGTPVLVDG 290

		

		Query: 318 TRLPIIGRVSMDSITLDVTSLPEGTLKLGSLVELIGPHQRLEDVARDCDTIPYEILTALG 377

		            R   +G VSMD + +D+T  P+    +G+ VEL G   +++DVA    T+ YE++ AL 

		Sbjct: 291 VRTMTVGTVSMDMLAVDLTPCPQA--GIGTPVELWGKEIKIDDVAAAAGTVGYELMCALA 348

		

		Query: 378 NRYARVYV 385

		            R   V V

		Sbjct: 349 LRVPVVTV 356

		

		

		>OMPADOMAIN#OMPA domain signature.

		          Length = 346

		

		 Score = 28.4 bits (63), Expect = 0.029

		 Identities = 30/181 (16%), Positives = 52/181 (28%), Gaps = 32/181 (17%)

		

		Query: 90  SFLIGGGAGYQVTDYFRTDLTLDYMTRSRFSGHVSGPDCNGDTGCASDERSHYSALSILA 149

		               G   GYQV  Y   ++  D++ R  + G              S E   Y A  +  

		Sbjct: 55  QLGAGAFGGYQVNPYVGFEMGYDWLGRMPYKG--------------SVENGAYKAQGVQL 100

		

		Query: 150 NAYVDLGNLGGVTPYVGAGIGGTRVNWSDLVDITSGFSQEGAANWRFTYALMAGASVDLT 209

		            A +       +  Y   G    R +    V   +        +   +     G    +T

		Sbjct: 101 TAKLGYPITDDLDIYTRLGGMVWRADTKSNVYGKN-------HDTGVSPVFAGGVEYAIT 153

		

		Query: 210 HNLKLDAGYRYRHVNGGKMFEGNQWTDAG-YDKGLNIHDIRVGLRYMFGGSDNAAYASQA 268

		             +     Y++           N   DA       +   + +G+ Y FG  + A   + A

		Sbjct: 154 PEIATRLEYQWT----------NNIGDAHTIGTRPDNGMLSLGVSYRFGQGEAAPVVAPA 203

		

		Query: 269 A 269

		            

		Sbjct: 204 P 204

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 33.7 bits (77), Expect = 0.003

		 Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 18/82 (21%)

		

		Query: 193 VLLVGPPGTGKTLLARSV---AGEANVPFFT-----ISGSDFVEMFVGV------GASRV 238

		           +++ G  GTGK L+AR++       N PF       I          G       GA   

		Sbjct: 163 LMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTR 222

		

		Query: 239 RD-MFEQAKKNAPCIIFIDEID 259

		               FEQA+      +F+DEI 

		Sbjct: 223 STGRFEQAEGGT---LFLDEIG 241

		

		

		>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD

		           chaperone signature.

		          Length = 168

		

		 Score = 30.3 bits (68), Expect = 0.010

		 Identities = 24/113 (21%), Positives = 35/113 (30%), Gaps = 11/113 (9%)

		

		Query: 337 TDDNPNSLYQAAYQYLMSGDYKAAEAGFREHVKRYPADPMTAEARFW--LGESLYGQGRY 394

		           + D    LY  A+    SG Y+ A   F+        D      RF+  LG      G+Y

		Sbjct: 32  SSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDS-----RFFLGLGACRQAMGQY 86

		

		Query: 395 PEAATLF---IDTQRDYPD-SKRAPENMFKLGMALEKMDNHDVACATFAQIPQ 443

		             A   +          P     A E + + G   E      +A    A   +

		Sbjct: 87  DLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELIADKTE 139

		

		

		>OMPADOMAIN#OMPA domain signature.

		          Length = 346

		

		 Score =  123 bits (311), Expect = 7e-37

		 Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 11/126 (8%)

		

		Query: 51  QDFTVNVGDRIFFDLDSSLIRADAQQTLSKQAQWLQRY--PQYSITIEGHADERGTREYN 108

		           Q     +   + F+ + + ++ + Q  L +    L        S+ + G+ D  G+  YN

		Sbjct: 211 QTKHFTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYN 270

		

		Query: 109 LALGQRRAAATRDFLASRGVPTNRMRTISYGNERPVA--VCDAD-------TCWSQNRRA 159

		             L +RRA +  D+L S+G+P +++     G   PV    CD          C + +RR 

		Sbjct: 271 QGLSERRAQSVVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRV 330

		

		Query: 160 VTVLNG 165

		              + G

		Sbjct: 331 EIEVKG 336

		

		

		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.

		          Length = 1541

		

		 Score = 42.4 bits (99), Expect = 3e-06

		 Identities = 36/216 (16%), Positives = 66/216 (30%), Gaps = 15/216 (6%)

		

		Query: 44   IESLTQIQQGDKKAPMKEKSAPVPTTRPQTVPNAENFGDQEVDTKTPPKPDAKAKPIETA 103

		            +++ TQ  +  +     +++    T    TV   E    +   T+  PK  ++  P    

		Sbjct: 1076 VKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSP---K 1132

		

		Query: 104  EEPKAQPEPVKKPEPKPDPKPEPKPEEKPTPVPANEMQA----EPEPKQEVKPDPVAEAI 159

		            +E     +P  +P  + DP    K  +  T   A+  Q         +Q V         

		Sbjct: 1133 QEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTG 1192

		

		Query: 160  EKQAEAPDAE--ALKLPDKVPAPEAKPKPPQAQTAK---TNERKQPEEKKKTQSASQ--- 211

		                E P+    A   P        KPK    ++ +    N            + +    

		Sbjct: 1193 NSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDL 1252

		

		Query: 212  TSQSKNDAIADEVAALLNKQKASGGGAKRSTDQASL 247

		            TS + N  ++D  A         G    +   Q  +

		Sbjct: 1253 TSTNTNAVLSDARAKAQFVALNVGKAVSQHISQLEM 1288

		

		

		

		 Score = 40.4 bits (94), Expect = 9e-06

		 Identities = 36/197 (18%), Positives = 61/197 (30%), Gaps = 32/197 (16%)

		

		Query: 75   PNAENFGDQEVDTKTPPKPDAKAKPIETAEEPKAQP--EPVKKPEPKPDPKPEPKPEEKP 132

		            P  E    Q VDT     P+        A+ P      E + + +  P P P P    + 

		Sbjct: 983  PEVEKRN-QTVDTTNITTPNNI-----QADVPSVPSNNEEIARVDEAPVPPPAPATPSET 1036

		

		Query: 133  TPVPANEMQAEPEPKQEVKPDPVAEAIEKQAEAPDAEALKLPDKVPAPEAKPKPPQAQTA 192

		            T   A   + E +  ++ + D   E   +  E        +       E      + +  

		Sbjct: 1037 TETVAENSKQESKTVEKNEQDA-TETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKET 1095

		

		Query: 193  KTNERKQP-----EEKKKT------------------QSASQTSQSKNDAIADEVAALLN 229

		            +T E K+      EEK K                   Q  S+T Q + +   +    +  

		Sbjct: 1096 QTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNI 1155

		

		Query: 230  KQKASGGGAKRSTDQAS 246

		            K+  S       T+Q +

		Sbjct: 1156 KEPQSQTNTTADTEQPA 1172

		

		

		>GPOSANCHOR#Gram-positive coccus surface protein anchor signature.

		          Length = 539

		

		 Score = 48.1 bits (114), Expect = 5e-08

		 Identities = 37/249 (14%), Positives = 79/249 (31%), Gaps = 15/249 (6%)

		

		Query: 41  DALKQQRDQMASEYEKLSNELTVTGDTLKQLEDEVASLKKDQSTITAVLIQSAKTDKKLQ 100

		               +   + AS+ ++L          L+   +   +      T+ A     A     L+

		Sbjct: 102 RKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLE 161

		

		Query: 101 QDIADIADRLVALREQEDGIRASLRARRGVLAEVLAALQRMGLNPPPAILVRPDDALASV 160

		           + +    +   A   +   + A   A     AE+  AL+              + + A  

		Sbjct: 162 KALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEG-----------AMNFSTADS 210

		

		Query: 161 RSAVLLGAVVPDMRDQVKELTGDLKDMQHVSASIAQEQEKLKETRTAQAEERERQSLLLE 220

		                L A    +  +  +L   L+   + S + + + + L+  + A    +      LE

		Sbjct: 211 AKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALE 270

		

		Query: 221 EKKRLQRQSEQEIEAQRKHSEELAAKAGSLKELIASLDKQMASVREAAEAAR----KAEA 276

		                      +I+        L A+   L+     L+    S+R   +A+R    + EA

		Sbjct: 271 GAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEA 330

		

		Query: 277 ERLAAAKEK 285

		           E     ++ 

		Sbjct: 331 EHQKLEEQN 339

		

		

		

		 Score = 39.3 bits (91), Expect = 2e-05

		 Identities = 43/253 (16%), Positives = 81/253 (32%), Gaps = 20/253 (7%)

		

		Query: 40  QDALKQQRDQMASEYEKLSNELTVTGDTLKQLEDEVASLKKDQSTITAVLIQSAKTDKKL 99

		           + AL  ++  +    E   N  T     +K LE E A+L+  Q+ +   L  +       

		Sbjct: 150 KAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTAD 209

		

		Query: 100 QQDIADIADRLVALREQEDGIRASLRARRGVLAEVLAALQRMGLNPPPAILVRPDDALAS 159

		              I  +     AL  ++  +  +L           A ++   L    A L      L  

		Sbjct: 210 SAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKT--LEAEKAALEARQAELEK 267

		

		Query: 160 VRSAVLLGAVVPDMRDQVKELTGDLKDMQHVSASIAQEQEKL-KETRTAQAEERERQSLL 218

		                            +   T D   ++ + A  A  + +       +Q     RQSL 

		Sbjct: 268 AL------------EGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLR 315

		

		Query: 219 --LEEKKRLQRQSEQEIEAQRKHSEELAAKAGSLKELIASLDKQMASVREAAEAARKAEA 276

		             L+  +  ++Q E E +   K  E+      S + L   LD    + ++     +K E 

		Sbjct: 316 RDLDASREAKKQLEAEHQ---KLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEE 372

		

		Query: 277 ERLAAAKEKAGES 289

		           +   +   +    

		Sbjct: 373 QNKISEASRQSLR 385

		

		

		>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein

		           signature.

		          Length = 166

		

		 Score = 27.5 bits (61), Expect = 0.031

		 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 6/72 (8%)

		

		Query: 34  GLFGGSFNPPHGGHALVAEIAIRRLKLDQLWWMVTPGNPLKDSRELAPLSERLRLSEEVA 93

		            ++ GSF+P   GH  + E   R    DQ++  V   NP K  + +  + ERL    +  

		Sbjct: 3   AIYPGSFDPITFGHLDIIERGCR--LFDQVYVAVL-RNPNK--QPMFSVQERLEQIAKAI 57

		

		Query: 94  ED-PRIKVTALE 104

		              P  +V + E

		Sbjct: 58  AHLPNAQVDSFE 69

		

		

		>CARBMTKINASE#Bacterial carbamate kinase signature.

		          Length = 314

		

		 Score = 39.0 bits (91), Expect = 2e-05

		 Identities = 25/124 (20%), Positives = 45/124 (36%), Gaps = 11/124 (8%)

		

		Query: 134 VPIINENDTVATTEIRYGDNDRLAARVATMMGADLLILLSDIDGLYTAPPHKNPDAQFLP 193

		           VP+I E+  +   E    D D    ++A  + AD+ ++L+D++G      +     Q+L 

		Sbjct: 197 VPVILEDGEIKGVEAVI-DKDLAGEKLAEEVNADIFMILTDVNGAALY--YGTEKEQWL- 252

		

		Query: 194 FVETITPQIEAMAGAAASELSRGGMKTKLDAG-KIANAAGTAMIITSGTRFGPLSAIDRG 252

		               +  + E            G M  K+ A  +     G   II    +         G

		Sbjct: 253 --REVKVE-ELRKYYEEGHFKAGSMGPKVLAAIRFIEWGGERAIIAHLEK---AVEALEG 306

		

		Query: 253 ERAT 256

		           +  T

		Sbjct: 307 KTGT 310

		

		

		>SACTRNSFRASE#Streptothricin acetyltransferase signature.

		          Length = 173

		

		 Score = 35.7 bits (82), Expect = 4e-05

		 Identities = 21/101 (20%), Positives = 32/101 (31%), Gaps = 7/101 (6%)

		

		Query: 59  LEQVD--GNAIFGAFHGEELLGIAGHHRHERRTERHRGTLASVYVEPQARGLKLGEALVQ 116

		           +  V+  G A F  +     +G        R        +  + V    R   +G AL+ 

		Sbjct: 57  VSYVEEEGKAAFLYYLENNCIG----RIKIRSNWNGYALIEDIAVAKDYRKKGVGTALLH 112

		

		Query: 117 KVIDHA-ARHVVVLDARVVATNEAAKRIYYALGFKTCGVER 156

		           K I+ A   H   L       N +A   Y    F    V+ 

		Sbjct: 113 KAIEWAKENHFCGLMLETQDINISACHFYAKHHFIIGAVDT 153

		

		

		>GPOSANCHOR#Gram-positive coccus surface protein anchor signature.

		          Length = 539

		

		 Score = 33.5 bits (76), Expect = 0.003

		 Identities = 20/53 (37%), Positives = 29/53 (54%)

		

		Query: 324 VGIAVPRRQARQREADAAEAGKKQREAEEQEPNSVKASLETNQIELCLGKQLS 376

		             I+   RQ+ +R+ DA+   KKQ E   +E NS  A+LE    EL   K+L+

		Sbjct: 374 NKISEASRQSLRRDLDASREAKKQVEKALEEANSKLAALEKLNKELEESKKLT 426

		

		

		

		 Score = 32.3 bits (73), Expect = 0.008

		 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 6/55 (10%)

		

		Query: 331 RQARQREADAAEAGKKQREAEEQEPNSVKASLETNQIELCLGKQLSARLIASQEE 385

		           RQ+ +R+ DA+   KKQ EAE Q+        E ++      + L   L AS+E 

		Sbjct: 346 RQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASR------QSLRRDLDASREA 394

		

		

		>TYPE3IMQPROT#Type III secretion system inner membrane Q protein

		          family signature.

		          Length = 86

		

		 Score = 56.7 bits (137), Expect = 1e-14

		 Identities = 23/73 (31%), Positives = 41/73 (56%)

		

		Query: 5  DALDIVNSAIWTVLTASGPAVLAAMLAGIGIALFQALTQIQEMTLTFVPKIIVIFVVLAL 64

		          D +   N A++ VL  SG   + A + G+ + LFQ +TQ+QE TL F  K++ + + L L

		Sbjct: 3  DLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFL 62

		

		Query: 65 TAPFVGAQINAFT 77

		           + + G  + ++ 

		Sbjct: 63 LSGWYGEVLLSYG 75

		

		

		>FLGHOOKAP1#Flagellar hook-associated protein signature.

		          Length = 546

		

		 Score =  101 bits (253), Expect = 5e-25

		 Identities = 106/554 (19%), Positives = 197/554 (35%), Gaps = 85/554 (15%)

		

		Query: 4   SSALLTAKSSLAATSKQTSVVSPNISGAKDADYSRRT---ASLVSGPYGSLYVG------ 54

		           SS +  A S L A     +  S NIS    A Y+R+T   A   S      +VG      

		Sbjct: 1   SSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVS 60

		

		Query: 55  -ISRSADEAMFNRYIQSNSAASASSTLADGLDRLSALYSADNYSGSPSGLIGDLRDALQT 113

		            + R  D  + N+   + + +S  +   + + ++  + S    + S +  + D   +LQT

		Sbjct: 61  GVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLSTS--TSSLATQMQDFFTSLQT 118

		

		Query: 114 YAASPSNSALGDSVVSVAQSLANALNDGTRQVQSLRNDADREIADSVANINDLLAKFEKA 173

		             ++  + A   +++  ++ L N      + ++      +  I  SV  IN+   +    

		Sbjct: 119 LVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASL 178

		

		Query: 174 NQDV--VGGTRMGRDVSDYLDQRDALLKQLSGEIGITTMMRGDNDMVIFAENGVTLFETT 231

		           N  +  + G   G   ++ LDQRD L+ +L+  +G+   ++      I   NG +L + +

		Sbjct: 179 NDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQGS 238

		

		Query: 232 ARKVTFEQSAVLTPGVAGKAVT----VDGVPLSHDTFDQPFGTGRLSGLLQLRDQIAPQY 287

		               T  Q A + P  A  + T    VDG   + +  ++   TG L G+L  R Q   Q 

		Sbjct: 239 ----TARQLAAV-PSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQT 293

		

		Query: 288 QMQLDEIARGLVTVFAESDQTGSSPDQ---TGLFSWSGSPAIPGAGLSAGIAGTIEVSVP 344

		           +  L ++A      F    + G   +       F+  G PA+     + G          

		Sbjct: 294 RNTLGQLALAFAEAFNTQHKAGFDANGDAGEDFFA-IGKPAVLQNTKNKGDVAIGATVTD 352

		

		Query: 345 FIASEGGSALLLRDGGANGANYK--------YNVQGAAGFSDRLR-------ALNEAFSE 389

		             A       +  D                           D L        A+N++F+ 

		Sbjct: 353 ASAVLATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTL 412

		

		Query: 390 PMVFDAAAGI-----------------------SSSSSLIGYSASSLGWLEGKRQKANSE 426

		             V DA   +                        +  +L+   ++S     G  +  N  

		Sbjct: 413 KPVSDAIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSK--TVGGAKSFNDA 470

		

		Query: 427 F-----------TYNGTVASQADFALSNAT-------GVDIDTEMALLLDLEHSYQASSR 468

		           +               T ++     ++  +       GV++D E   L   +  Y A+++

		Sbjct: 471 YASLVSDIGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQ 530

		

		Query: 469 VLTTVSAMLDDLLN 482

		           VL T +A+ D L+N

		Sbjct: 531 VLQTANAIFDALIN 544

		

		

		>FLGHOOKAP1#Flagellar hook-associated protein signature.

		          Length = 546

		

		 Score = 41.1 bits (96), Expect = 7e-06

		 Identities = 12/48 (25%), Positives = 27/48 (56%)

		

		Query: 348 IMSGTLEESNADIAQELTDMIEAQRSYTANSKVFQTGSELMDVLVNLK 395

		           + +     S  ++ +E  ++   Q+ Y AN++V QT + + D L+N++

		Sbjct: 499 LSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINIR 546

		

		

		

		 Score = 33.0 bits (75), Expect = 0.002

		 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

		

		Query: 9  TGVSGMNAQANRLSTVADNIANASMVGYKRAET-QFSSLVLPSTAGQYNSGSVLTDVR 65

		            +SG+NA    L+T ++NI++ ++ GY R  T    +       G   +G  ++ V+

		Sbjct: 6  NAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVSGVQ 63

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 32.5 bits (74), Expect = 0.001

		 Identities = 25/148 (16%), Positives = 53/148 (35%), Gaps = 10/148 (6%)

		

		Query: 2   IVVVDDRDMVTEGYSSWFGREGITTTGF-TPTDFDEWVESVPEQDIMAIEAFLIGECADQ 60

		           I+V DD   +    +    R G              W+ +    D++  +  +  E  + 

		Sbjct: 6   ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGD-GDLVVTDVVMPDE--NA 62

		

		Query: 61  HRLPARIRER-CKAPVIAVNDRPSLEHTLELFQSGVDDVVRKPVHVREILARI-NAIRRR 118

		             L  RI++     PV+ ++ + +    ++  + G  D + KP  + E++  I  A+   

		Sbjct: 63  FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122

		

		Query: 119 AGASATSGADGTQLGPIRVFSDGRDPQI 146

		               +    D     P+     GR   +

		Sbjct: 123 KRRPSKLEDDSQDGMPLV----GRSAAM 146

		

		

		>FLGHOOKFLIK#Flagellar hook-length control protein signature.

		          Length = 375

		

		 Score = 35.6 bits (81), Expect = 3e-04

		 Identities = 28/129 (21%), Positives = 53/129 (41%), Gaps = 15/129 (11%)

		

		Query: 261 KTLQIRLDPVELGAVTARIRVAGDSVEVHLVADKSHAAEMLAADRSMIEKALKVAGVGDD 320

		           ++ ++RL P +LG V   ++V  +  ++ +V+   H    L A   ++   L  +G+   

		Sbjct: 257 QSAELRLHPQDLGEVQISLKVDDNQAQIQMVSPHQHVRAALEAALPVLRTQLAESGI--- 313

		

		Query: 321 TKISVTVADRNAQGAAQHVAAAQNAGQQQASAQQQGHQLAFNMQQQGSQGRGGEAQAQFM 380

		                       Q    +++    +GQQQA++QQQ  Q   N +    +          +

		Sbjct: 314 ------------QLGQSNISGESFSGQQQAASQQQQSQRTANHEPLAGEDDDTLPVPVSL 361

		

		Query: 381 SGRSGGEGG 389

		            GR  G  G

		Sbjct: 362 QGRVTGNSG 370

		

		

		>PF05616#Neisseria meningitidis TspB protein

		          Length = 501

		

		 Score = 32.4 bits (73), Expect = 0.003

		 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 7/58 (12%)

		

		Query: 186 PAPQTVPQTAPLPQAQPKKAETQEELIADLKKAATGEPAPNAGKAAKPEPMPDVTVVP 243

		           P P   P +A  P AQP    +  E  A+        PAPN     +P P PD  + P

		Sbjct: 311 PRPDLTPGSAEAPNAQPLPEVSPAENPAN-------NPAPNENPGTRPNPEPDPDLNP 361

		

		

		>FLAGELLIN#Flagellin signature.

		          Length = 507

		

		 Score = 76.6 bits (188), Expect = 6e-18

		 Identities = 51/272 (18%), Positives = 93/272 (34%), Gaps = 7/272 (2%)

		

		Query: 4   ILTNSSALTALQTLASTNKSLESTQNRISTGLRISEASDNASYWSIATSMKSDNKANSAV 63

		           I TNS +L     L  +  SL S   R+S+GLRI+ A D+A+  +IA    S+ K  +  

		Sbjct: 4   INTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQA 63

		

		Query: 64  QDALGLGAGKVDTAYSAINKIRESVDDIKTKLVSAMGA--STEDKGKIETEIKSIVANIN 121

		                 G     T   A+N+I  ++  ++   V A     S  D   I+ EI+  +  I+

		Sbjct: 64  SRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEID 123

		

		Query: 122 SALSNANYAGSNLLNGPTTDLNVVASYNRSGNAVTVDKITVKATDTDAKTMVKDIVDAGF 181

		              +   + G  +L+        V +     N      I ++  D  +  +    V+   

		Sbjct: 124 RVSNQTQFNGVKVLSQDNQMKIQVGA-----NDGETITIDLQKIDVKSLGLDGFNVNGPK 178

		

		Query: 182 FTSASDDTAIGTALNTVETALASLATGAATLGAAKSQIDSQKSFLSGLQDSIEKGVGTLV 241

		             +  D  +    +   +T           + +     D+    +               

		Sbjct: 179 EATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTT 238

		

		Query: 242 DADMNKESARLSALQVQQQLGVQALSIANSSN 273

		           D   N  +  L           +A +IA +  

		Sbjct: 239 DDAENNTAVDLFKTTKSTAGTAEAKAIAGAIK 270

		

		

		

		 Score = 62.8 bits (152), Expect = 3e-13

		 Identities = 39/235 (16%), Positives = 77/235 (32%), Gaps = 2/235 (0%)

		

		Query: 49  IATSMKSDNKANSAVQDALGLGAGKVDTAYSAINKIRESVDDIKTKLVSAMGASTEDKGK 108

		                         +    G       +      K+  +V DI     +   A+ +    

		Sbjct: 273 KEGDTFDYKGVTFTIDTKTGNDGNGKVSTTINGEKVTLTVADITAGAANVDAATLQSSKN 332

		

		Query: 109 IETEIKSIVANINSALSNANYAGSNLLNGPTTDLNVVASYNRSGNAVTVDKITVKATDTD 168

		           + T + +     +    N +   S+L            + N +          V      

		Sbjct: 333 VYTSVVNGQFTFDDKTKNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKT 392

		

		Query: 169 AKTMVKDIVDAGFFTSASDDTAIGT--ALNTVETALASLATGAATLGAAKSQIDSQKSFL 226

		                     +      +      T   L ++++AL+ +    ++LGA +++ DS  + L

		Sbjct: 393 MFIDKTASGVSTLINEDAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNL 452

		

		Query: 227 SGLQDSIEKGVGTLVDADMNKESARLSALQVQQQLGVQALSIANSSNQSILSLFR 281

		                ++      + DAD   E + +S  Q+ QQ G   L+ AN   Q++LSL R

		Sbjct: 453 GNTVTNLNSARSRIEDADYATEVSNMSKAQILQQAGTSVLAQANQVPQNVLSLLR 507