>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 30.9 bits (69), Expect = 0.037 Identities = 36/173 (20%), Positives = 71/173 (41%), Gaps = 19/173 (10%) Query: 121 QEESQLKERILKRKNEKIILNVNFIGEEVLGEEEANARFEKY---SQALKSNYIQYISIK 177 Q+ S+ ++ + + EK+ F+ E+ + + Y S+ K Y + Sbjct: 118 QDLSEEEKNSMNSRGEKVPFASRFVFEKKRETPKLIINIKDYAINSEQSKEVYYEIGKGI 177 Query: 178 ITTIFSQINILDFEY-----SKKEIVKRLDALYALALEEEKKQGMPKFINLDMEEFRDLE 232 I S+ LD E+ S + D L++ +E K + K I+++ ++ Sbjct: 178 SLDIISKDKSLDPEFLNLIKSLSDDSDSSDLLFSQKFKE-KLELNNKSIDINF-----IK 231 Query: 233 LTVESFMESIAK-----FDLNAGIVLQAYIPDSYEYLKKLHAFSKERVLKGLK 280 + F + + F + VL+ Y PD +EY+ KL E++ + LK Sbjct: 232 ENLTEFQHAFSLAFSYYFAPDHRTVLELYAPDMFEYMNKLEKGGFEKISESLK 284
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 33.9 bits (77), Expect = 5e-04 Identities = 29/201 (14%), Positives = 64/201 (31%), Gaps = 4/201 (1%) Query: 29 NEEPLNNEELLKSLKDLTDRFKKLEDKLEDLEPLIKISRFIDSFFRKSSNDTQENSKDPQ 88 + + L L R LE LE DS K+ + + Q Sbjct: 137 TADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTA----DSAKIKTLEAEKAALEARQ 192 Query: 89 KKEKMLKGVKEEINKLNNRERTDLIRENEKLTKANTDLKTENKTLTTEKGKLTTEKTELT 148 + + + ++ + L E L DL+ + + + L Sbjct: 193 AELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLE 252 Query: 149 DKITELQKQANDLKNSHQVLENEKAELLKEKDNLTKENTELTEKNKALTTEKENLTTDLS 208 + L+ + +L+ + + N + L E L + L + + L + Sbjct: 253 AEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQ 312 Query: 209 NAKSQVIQAKEEKDKLEQKYA 229 + + + ++E K +LE ++ Sbjct: 313 SLRRDLDASREAKKQLEAEHQ 333
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 34.3 bits (78), Expect = 5e-04 Identities = 29/148 (19%), Positives = 56/148 (37%), Gaps = 5/148 (3%) Query: 50 PKETFLQTDSGMQKIGNTKDEKKDDAFESLNLDPSKQESDLDKVADNVKKQESDAFKMPI 109 P ET ++ T ++ + DA E+ + + V N Q ++ + Sbjct: 1033 PSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKAN--TQTNEVAQSGS 1090 Query: 110 QTNQTQTEMKTTEETQEAKKELKA-VEHTPMSAQKESQAVAKKEIPHKNPKVVSKDKANK 168 +T +TQT T E +++ K E T + SQ K+E + A + Sbjct: 1091 ETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQP--QAEPARE 1148 Query: 169 DKAKHAAKEPKAKKEAHKEVSKKANSTN 196 + KEP+++ + + A T+ Sbjct: 1149 NDPTVNIKEPQSQTNTTADTEQPAKETS 1176
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 60.8 bits (147), Expect = 5e-13 Identities = 61/263 (23%), Positives = 109/263 (41%), Gaps = 29/263 (11%) Query: 4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATL-AFTYLNESLEKRVRPIAQELNSPYVYE 62 ++GK I G A + I +A++ +QGA + A Y E LEK V + E + Sbjct: 6 IEGKIAFITGAA--QGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFP 63 Query: 63 LDVSKEEHFKPLYDSVKKDLGSLDFIVHSVAF--------APKEALEGSLLETSKSAFNT 114 DV + +++++G +D +V+ E E + S FN Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 115 AMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKYMAHYNVMGLAKAALESAVRYLAV 174 + +S Y + + ++ + +N A V S MA Y +KAA + L + Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPRTS-------MAAY---ASSKAAAVMFTKCLGL 173 Query: 175 DLGKHNIRVNALSAGPIRT-----LASSGIADFRMILKWNE---INAPLRKNVSLEEVGN 226 +L ++NIR N +S G T L + ++I E PL+K ++ + Sbjct: 174 ELAEYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIAD 233 Query: 227 AGMYLLSNLSSGVSGEVHFVDAG 249 A ++L+S + ++ VD G Sbjct: 234 AVLFLVSGQAGHITMHNLCVDGG 256
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 46.7 bits (111), Expect = 7e-08 Identities = 55/271 (20%), Positives = 104/271 (38%), Gaps = 16/271 (5%) Query: 28 LILSGSLTPHQSFQLGIAVLMGYVFGSFLIQFLSPLMSLESIAKISFGLIALSFLICYFD 87 L+ S +T H L + LM + L LS + +S A+ + I Sbjct: 35 LVHSNDVTAHYGILLALYALMQFACAPVLGA-LSDRFGRRPVLLVSLAGAAVDYAI--MA 91 Query: 88 SIPFFW-LWIWRFIAGVASSALMILVAPLSLPYVKENKKALVGGFIFSAVGIGSVFSGFV 146 + PF W L+I R +AG+ + A + +++A GF+ + G G V + Sbjct: 92 TAPFLWVLYIGRIVAGI-TGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVL 150 Query: 147 LPWISSYNIKWAWIFLGGSCLIAFILSLIGLK-----NRSLKKKSVKKEESAFKIPFHL- 200 + ++ + + F+ L R ++ ++F+ + Sbjct: 151 GGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMT 210 Query: 201 ---WLLLISCALNAIGFLPHTLFWVDYLIRHLNISPTTAGTSWALFG-FGATLGSLISGP 256 L+ + + +G +P L WV + + TT G S A FG + ++I+GP Sbjct: 211 VVAALMAVFFIMQLVGQVPAAL-WVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGP 269 Query: 257 MAQKLGAKNANIFILILKSIACFLPIFFHQI 287 +A +LG + A + +I L F + Sbjct: 270 VAARLGERRALMLGMIADGTGYILLAFATRG 300
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.3 bits (65), Expect = 0.011 Identities = 9/18 (50%), Positives = 11/18 (61%) Query: 8 LILSGPSGAGKSTLTKYL 25 ++L G G GKSTL L Sbjct: 599 VVLEGTGGIGKSTLINTL 616
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 64.3 bits (156), Expect = 6e-13 Identities = 48/212 (22%), Positives = 76/212 (35%), Gaps = 11/212 (5%) Query: 148 EALAQEEPNNEEQLLPTLNVQEEKEEVKEEEKEEVKETPQDEEKPKDNEVQEGETQKNEE 207 E QE E+ + EV +E K VK Q E + + Sbjct: 1042 ENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEV---AQSGSETKETQTT 1098 Query: 208 VSKELETQEELEIPKEETQEIKEEKQEKTQDSPSVQELEAMQELVKEIQENSNGQENKKE 267 +KE T E+ E K ET++ +E + +Q SP ++ E +Q + +EN N KE Sbjct: 1099 ETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPAREND-PTVNIKE 1157 Query: 268 TQENTETPQDVETSQETPQEKTQKLEIPQESAEIPQEKETQELEIPKEETQESTETPQEL 327 Q T T D E P ++T + +E P+ T +T+ Sbjct: 1158 PQSQTNTTAD----TEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNS 1213 Query: 328 ETQELEIPKEEIQESTET-PQEKTQKLETQED 358 E+ PK + S + P + D Sbjct: 1214 ESS--NKPKNRHRRSVRSVPHNVEPATTSSND 1243 Score = 59.7 bits (144), Expect = 2e-11 Identities = 49/288 (17%), Positives = 81/288 (28%), Gaps = 48/288 (16%) Query: 140 ELENLGDLEALAQEEPNNEEQLLPTLNVQEEKEEVKEEEKEEVKETPQDEEKPKDNEVQE 199 E+E N Q EE V E P P Sbjct: 984 EVEKRNQTVDTTNITTPNNIQ------ADVPSVPSNNEEIARVDEAP---VPPPAPATPS 1034 Query: 200 GETQKNEEVSKELETQEELEIPKEETQEIKEEKQEKTQDSPSVQELEAMQELVKEIQENS 259 T+ E SK+ + +T E E+ +T EA + Q N Sbjct: 1035 ETTETVAENSKQ----------ESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNE 1084 Query: 260 ---NGQENKKETQENTETPQDVETSQETPQEKTQKLEIPQESAEIPQEKETQELEIPKEE 316 +G E K+ T+ VE ++ E + E+P+ ++++ ++E E P+ E Sbjct: 1085 VAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAE 1144 Query: 317 TQESTETPQELETQELEIPKEEIQESTETPQEKTQKLETQEDHYESIEDIPEPVMAKAMG 376 + + + + PQ +T E + E Sbjct: 1145 PA----------------RENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQ------- 1181 Query: 377 EELPFLNEAVAKTSNNENDTETPKESVIKTPQEKEESIETPKESDKTS 424 P T N+ + P ES PK + S Sbjct: 1182 ---PVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRS 1226 Score = 53.9 bits (129), Expect = 1e-09 Identities = 43/256 (16%), Positives = 92/256 (35%), Gaps = 21/256 (8%) Query: 177 EEKEEVKETPQDEEKPKDNEVQEGETQKNEEVSK--ELETQEELEIPKEETQEIKEEKQE 234 E++ + +T NEE+++ E ET E E + Sbjct: 986 EKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSK 1045 Query: 235 KTQDSPSVQELEAMQELVKEIQENSNGQENKKETQENTETPQDVETSQETPQEKTQKLEI 294 + + E +A + Q +E K + NT+T + ++ ET + +T + + Sbjct: 1046 QESKTVEKNEQDATE---TTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKE 1102 Query: 295 PQESAEIPQEKETQELEIPKEETQESTETPQELETQELEIPKEEIQESTETPQEKTQKLE 354 + +EK E E +E + +++ PK+E E+ + E Sbjct: 1103 TATVEK--EEKAKVETEKTQEVPKVTSQVS----------PKQEQSETVQPQAEP----A 1146 Query: 355 TQEDHYESIEDIPEPVMAKAMGEELPFLNEAVAKTSNNENDTETPKESVIKTPQEKEESI 414 + D +I++ A E+ + + E+ T SV++ P+ + Sbjct: 1147 RENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPAT 1206 Query: 415 ETPKESDKTSSPLELR 430 P + ++S+ + R Sbjct: 1207 TQPTVNSESSNKPKNR 1222 Score = 45.8 bits (108), Expect = 3e-07 Identities = 29/192 (15%), Positives = 65/192 (33%), Gaps = 10/192 (5%) Query: 142 ENLGDLEALAQEEPNNEEQLLPTLNVQEEKEEVKEEEKEEVKETPQDEEKPK---DNEVQ 198 E +A+E +N + T V + E KE + E KET E++ K + E Sbjct: 1060 ETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKT 1119 Query: 199 EGETQKNEEVSKELETQEELEI-----PKEETQEIKEEKQEKTQDSPSVQELEAMQELVK 253 + + +VS + E E ++ + + +E Q +T + ++ +E Sbjct: 1120 QEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPA--KETSS 1177 Query: 254 EIQENSNGQENKKETQENTETPQDVETSQETPQEKTQKLEIPQESAEIPQEKETQELEIP 313 +++ E P++ + P ++ P+ +E Sbjct: 1178 NVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPA 1237 Query: 314 KEETQESTETPQ 325 + + + Sbjct: 1238 TTSSNDRSTVAL 1249
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 190 bits (485), Expect = 4e-63 Identities = 51/172 (29%), Positives = 84/172 (48%), Gaps = 18/172 (10%) Query: 56 GERPLFADRRAMKPNDLITIIVSEKASANYSSS----KDYKSASGGNSTPPRLTYNGLDE 111 G +PLF DRR D +TI++ E SA+ SSS +D K+ G ++ P L GL Sbjct: 61 GYQPLFEDRRPRNIGDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVPRYL--QGLFG 118 Query: 112 RKKQEAQYLDDKNNYNFTKSSNNTNFKGGGSQKKSEDLEIVLSARIIKVLENGNYFIYGN 171 + + + S F G G S L+ + +VL NGN + G Sbjct: 119 NARADVEA------------SGGNTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGE 166 Query: 172 KEVLVDGEKQILKVSGVIRPYDIERNNTIQSKFLADAKIEYTNLGHLSDSNK 223 K++ ++ + ++ SGV+ P I +NT+ S +ADA+IEY G+++++ Sbjct: 167 KQIAINQGTEFIRFSGVVNPRTISGSNTVPSTQVADARIEYVGNGYINEAQN 218
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 27.2 bits (60), Expect = 0.026 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 3/49 (6%) Query: 102 RGETILKALECIAFE---EFQLNSLHLEVMENNFKAIAFYEKNHYELEG 147 R + + AL A E E L LE + N A FY K+H+ + Sbjct: 102 RKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFIIGA 150
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.4 bits (68), Expect = 0.002 Identities = 11/23 (47%), Positives = 14/23 (60%) Query: 12 VVALLGESGAGKSTILRILAGLE 34 V L G G GKST++ L GL+ Sbjct: 598 SVVLEGTGGIGKSTLINTLVGLD 620
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 196 bits (501), Expect = 3e-57 Identities = 115/461 (24%), Positives = 190/461 (41%), Gaps = 67/461 (14%) Query: 3 NIRNIAVIAHVDHGKTTLVDGLLSQSGTFSEREKVDE--RVMDSNDLERERGITILSKNT 60 I NI V+AHVD GKTTL + LL SG +E VD+ D+ LER+RGITI + T Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 61 AIYYKDTKINIIDTPGHADFGGEVERVLKMVDGVLLLVDAQEGVMPQTKFVVKKALSFGI 120 + +++TK+NIIDTPGH DF EV R L ++DG +LL+ A++GV QT+ + GI Sbjct: 62 SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGI 121 Query: 121 CPIVVVNKIDKPAAEPDRVVDEVFDLF---------VAMGASDKQLDFPV-----VYAAA 166 I +NKID+ + V ++ + V + + +F Sbjct: 122 PTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEG 181 Query: 167 RDGYAMKSLDDE----------------------------KKNL--EPLFETILEHVPSP 196 D K + + K N+ + L E I S Sbjct: 182 NDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSS 241 Query: 197 SGSVDEPLQMQIFTLDYDNYVGKIGIARVFNGSVKKNESVLLMKSDGSKENGRITKLIGF 256 + L ++F ++Y ++ R+++G + +SV + KE +IT++ Sbjct: 242 THRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRI----SEKEKIKITEMYTS 297 Query: 257 LGLARTEIENAYAGDIVAIAG--FSAMDV-GDSVVDPANPMPLDPMHLEEPTMSVYFAVN 313 + +I+ AY+G+IV + V GD+ + P +P P + + Sbjct: 298 INGELCKIDKAYSGEIVILQNEFLKLNSVLGDTKLLPQRERIENP----LPLLQTTVEPS 353 Query: 314 DSPLAGLEGKHVTANKLKDRLLKEMQTNIAMKCEEMGEGKFKVSGRGELQITILAENLRR 373 + + D LL+ + + +S G++Q+ + L+ Sbjct: 354 KPQQREMLLDALLEISDSDPLLRYYVDSAT--------HEIILSFLGKVQMEVTCALLQE 405 Query: 374 E-GFEFSISRPEVIIKEENGVKCEPFEHLVIDTPQDFSGAI 413 + E I P VI E K E H+ + P F +I Sbjct: 406 KYHVEIEIKEPTVIYMERPLKKAEYTIHIEVP-PNPFWASI 445 Score = 41.8 bits (98), Expect = 8e-06 Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 1/80 (1%) Query: 396 EPFEHLVIDTPQDFSGAIIERLGKRKAEMKAMNPMSDGYTRLEFEIPARGLIGYRSEFLT 455 EP+ I PQ++ K A + + + L EIPAR + YRS+ Sbjct: 537 EPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCIQEYRSDLTF 595 Query: 456 DTKGEGVMNHSFLEFRPFSG 475 T G V + +G Sbjct: 596 FTNGRSVCLTELKGYHVTTG 615
>SECFTRNLCASE#Bacterial translocase SecF protein signature. Length = 333 Score = 28.3 bits (63), Expect = 0.003 Identities = 10/17 (58%), Positives = 15/17 (88%) Query: 55 LNDSVVCYERMREGLIK 71 +ND+VV ++R+RE LIK Sbjct: 220 INDTVVVFDRLRENLIK 236
>cloacin#Cloacin signature. Length = 551 Score = 28.5 bits (63), Expect = 0.010 Identities = 27/133 (20%), Positives = 44/133 (33%), Gaps = 11/133 (8%) Query: 27 SDEDLAKMAGVVAP--QDIVDYTKELKMRMKKMPEDK--KKAFHKQLHEYATKNTDKMTV 82 ++ED+A+ A Q EL K + + K F++ H+ + Sbjct: 333 ANEDVARNQERQAKAVQVYNSRKSELDAANKTLADAIAEIKQFNRFAHDPMAGGHRMWQM 392 Query: 83 ADFEARQ-----KAIKEALKKGNMEDMDDDFGLRSCKHGKMHKHDKHGKKHDK--KHGKN 135 A +A++ + A E D D L S + K DK + Sbjct: 393 AGLKAQRAQTDVNNKQAAFDAAAKEKSDADAALSSAMESRKKKEDKKRSAENNLNDEKNK 452 Query: 136 HDKDHDDKDHDHH 148 K D HD+H Sbjct: 453 PRKGFKDYGHDYH 465
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 29.6 bits (66), Expect = 0.044 Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 1/97 (1%) Query: 473 ALKNHSENKSALEEIKEFKFPSLKPKPTTETTAETKEKEVQENDTKEAIEKETKENNIKE 532 ++ +++E + ++E P TTET AE ++E + + E ET N + Sbjct: 1009 SVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREV 1068 Query: 533 IQETQPKETPTALQEFMANNSNLIEEIKSEFEIKSVE 569 +E + Q S + E K Sbjct: 1069 AKEAKS-NVKANTQTNEVAQSGSETKETQTTETKETA 1104
>PF07132#Harpin protein (HrpN) Length = 356 Score = 35.8 bits (82), Expect = 2e-05 Identities = 21/46 (45%), Positives = 32/46 (69%) Query: 46 FIGGGVGAGMGGAMGGMIGSLGGPWGTVFGAGIGGGIGAYSGAEIG 91 F+G +G G+GG +GG+ SLGG G + G G+GGG+G+ G+ +G Sbjct: 60 FMGSMMGGGLGGGLGGLGSSLGGLGGGLLGGGLGGGLGSSLGSGLG 105 Score = 31.2 bits (70), Expect = 8e-04 Identities = 18/49 (36%), Positives = 27/49 (55%) Query: 44 GKFIGGGVGAGMGGAMGGMIGSLGGPWGTVFGAGIGGGIGAYSGAEIGD 92 G +GGG+G G+GG + G GG G G G+G +G+ G+ +G Sbjct: 62 GSMMGGGLGGGLGGLGSSLGGLGGGLLGGGLGGGLGSSLGSGLGSALGG 110
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 276 bits (708), Expect = 2e-96 Identities = 113/245 (46%), Positives = 162/245 (66%), Gaps = 2/245 (0%) Query: 1 MRFFIFLILICPLICPLMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLI 60 MR + + + L A + LP + S P + + + +T L P+++ Sbjct: 1 MRRLLSVAPVL-LWLITPLAFAQLPGIT-SQPLPGGGQSWSLPVQTLVFITSLTFIPAIL 58 Query: 61 LVMTSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMD 120 L+MTSFTR+I+VF LR ALGT PP Q+L+ L+L LTFFIM P + K Y +P+ + Sbjct: 59 LMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSE 118 Query: 121 KKISYTEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKTPDEVSLSVLIPAFMISE 180 +KIS EA EK A P +EFML+ TRE DL LF R+ N + P+ V + +L+PA++ SE Sbjct: 119 EKISMQEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVTSE 178 Query: 181 LKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTEN 240 LKTAFQIGF +++PFL+ID+VI+S+LMA+GMMM+PP I+LPFK+++F+LVDG+ LL + Sbjct: 179 LKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGS 238 Query: 241 LVASF 245 L SF Sbjct: 239 LAQSF 243
>PF01206#SirA family protein Length = 76 Score = 26.6 bits (59), Expect = 0.004 Identities = 7/22 (31%), Positives = 12/22 (54%) Query: 19 SGKEIEVLSTKPEMRIDISSFC 40 +G+ + V++T P D SF Sbjct: 31 AGEVLYVMATDPGSVKDFESFS 52
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 1735 bits (4494), Expect = 0.0 Identities = 953/1219 (78%), Positives = 1038/1219 (85%), Gaps = 75/1219 (6%) Query: 1 MTNETIDQTITPDQTDFVPQRFINNLQVAFIKVDSAVASFDPDQKPIVDKNDRDNRQAFE 60 MTNETIDQ + F PQ+FINNLQVAF+KVD+AVAS+DPDQKPIVDKNDRDNRQAFE Sbjct: 1 MTNETIDQQ-PQTEAAFNPQQFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNRQAFE 59 Query: 61 KISQLREEYANKAIKNPTKKNQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQRYQI 120 ISQLREEY+NKAIKNPTKKNQYFSDFINKSNDLINKDNLI V+SS +SF+KFGDQRY+I Sbjct: 60 GISQLREEYSNKAIKNPTKKNQYFSDFINKSNDLINKDNLIDVESSTKSFQKFGDQRYRI 119 Query: 121 FTSWVSLQKDPSKINTQKIRDFMENIIQPPISDDKEKAEFLRSAKQSFAGIIIGNQIRSD 180 FTSWVS Q DPSKINT+ IR+FMENIIQPPI DDKEKAEFL+SAKQSFAGIIIGNQIR+D Sbjct: 120 FTSWVSHQNDPSKINTRSIRNFMENIIQPPILDDKEKAEFLKSAKQSFAGIIIGNQIRTD 179 Query: 181 QKFMGVFDESLKERQEAEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLDQEPVPHVQPD 240 QKFMGVFDESLKERQEAEKN EP GGDWLDIFLSF+F+KKQSSD+KE ++QEPVPHVQPD Sbjct: 180 QKFMGVFDESLKERQEAEKNGEPTGGDWLDIFLSFIFDKKQSSDVKEAINQEPVPHVQPD 239 Query: 241 IATTTTDIQGLPPESRDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNAL 300 IATTTTDIQGLPPE+RDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNAL Sbjct: 240 IATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNAL 299 Query: 301 SSVLMGSHNGVEPEKVSLLYGGNGGPEARHDWNATVGYKNQQGSNVATLINVHMKNGSGL 360 SSVLMGSHNG+EPEKVSLLYGGNGGP ARHDWNATVGYK+QQG+NVAT+INVHMKNGSGL Sbjct: 300 SSVLMGSHNGIEPEKVSLLYGGNGGPGARHDWNATVGYKDQQGNNVATIINVHMKNGSGL 359 Query: 361 VIAGGEKGVNNPSFYLYKEDQLTGLKQALSQKEIQNKVDFMEFLAKNNARLDNLSEKEKE 420 VIAGGEKG+NNPSFYLYKEDQLTG ++ALSQ+EIQNK+DFMEFLA+NNA+LDNLSEKEKE Sbjct: 360 VIAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIQNKIDFMEFLAQNNAKLDNLSEKEKE 419 Query: 421 KFQTEIEDFQKNPKAYLDALGNDHIAFVSKKDKKHLALVTEFGNGELSYTLKDYGKKQDK 480 KF+TEI+DFQK+ KAYLDALGND IAFVSKKD KH AL+TEFGNG+LSYTLKDYGKK DK Sbjct: 420 KFRTEIKDFQKDSKAYLDALGNDRIAFVSKKDTKHSALITEFGNGDLSYTLKDYGKKADK 479 Query: 481 ALDRETKTTLQGNLKHDGVMFVNYSNFKYTNASKSPDKGVGATNGVSHLEANFSKVAVFN 540 ALDRE TLQG+LKHDGVMFV+YSNFKYTNASK+P+KGVG TNGVSHLE F+KVA+FN Sbjct: 480 ALDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEVGFNKVAIFN 539 Query: 541 LPNLNNLAITSYMRRDLEGKLSAKGLSLQEANKLIKDFLNSNKELVEKALNFNKTVAEAK 600 LP+LNNLAITS++RR+LE KL+ KGLS QEANKLIKDFL+SNKELV K LNFNK VA+AK Sbjct: 540 LPDLNNLAITSFVRRNLEDKLTTKGLSPQEANKLIKDFLSSNKELVGKTLNFNKAVADAK 599 Query: 601 NTGNYDEVKKAQKDLEKSIRKREHLEKEVTKKMENRNGNKNRMEAKAQANSQKDKIFAII 660 NTGNYDEVKKAQKDLEKS+RKREHLEKEV KK+E+++GNKN+MEAKAQANSQKD+IFA+I Sbjct: 600 NTGNYDEVKKAQKDLEKSLRKREHLEKEVEKKLESKSGNKNKMEAKAQANSQKDEIFALI 659 Query: 661 NEEAGKEARGAACVQNLKSIRMELSDKLENINKNLKDLDKSFDEFKNGKNKDFSKTEETL 720 N+EA ++AR A QNLK I+ ELSDKLEN+NKNLKD DKSFDEFKNGKNKDFSK EETL Sbjct: 660 NKEANRDARAIAYAQNLKGIKRELSDKLENVNKNLKDFDKSFDEFKNGKNKDFSKAEETL 719 Query: 721 KALKDSVKDLGINPEWISKVENLNTALNEFKNGKNKDFSKVIQAKSDLENSIKDVIINQK 780 KALK SVKDLGINPEWISKVENLN ALNEFKNGKNKDFSKV QAKSDLENS+KDVIINQK Sbjct: 720 KALKGSVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSVKDVIINQK 779 Query: 781 ITDKVDNLNQAVSIAKATGDFSGVEQALADLKNFSKGQLTQQAQKNEDFNTGKNSELYQS 840 +TDKVDNLNQAVS+AKATGDFS VEQALADLKNFSK QL QQAQKNE N K SE+YQS Sbjct: 780 VTDKVDNLNQAVSVAKATGDFSRVEQALADLKNFSKEQLAQQAQKNESLNARKKSEIYQS 839 Query: 841 VKNGVNGTLVGNGLSKAEATTLSKNFSDIKKELNAKLGNFNNNNNDGLKNSIEPIYAKVN 900 VKNGVNGTLVGNGLS+AEATTLSKNFSDIKKELNAKLGNFNNNNN+GLKN EPIYA Sbjct: 840 VKNGVNGTLVGNGLSQAEATTLSKNFSDIKKELNAKLGNFNNNNNNGLKN--EPIYA--- 894 Query: 901 KKKAGQAASPEESIYTQVAKKVNAKIDQLNQAASGFGNVGQAGFPLKRHTKVDDLSKVGL 960 KVN K GQA Sbjct: 895 --------------------KVNKK------------KAGQAASL--------------- 907 Query: 961 SANHEPIYATIDDLGGPFPLKRHTKVDDLSKV--GLSANHEPIYATIDDLGGPFPLTRHT 1018 EPIYA + K + K+D L+++ GL + FPL RH Sbjct: 908 ---EEPIYAQVAK-------KVNAKIDRLNQIASGLGVVGQ---------AAGFPLKRHD 948 Query: 1019 KVDDLSKVGLSREQELTQKIDNLNQALSEAEACHFGNLEQMIDKLKDSTKKNVMNLYVES 1078 KVDDLSKVGLSR QEL QKIDNLNQA+SEA+A FGNLEQ IDKLKDSTK N MNL+VES Sbjct: 949 KVDDLSKVGLSRNQELAQKIDNLNQAVSEAKAGFFGNLEQTIDKLKDSTKHNPMNLWVES 1008 Query: 1079 AKKVPTSLSAKLDNYATNSHTRINSNVKNGTINEKETSMLMRKNPEWLKLVNDKIVAHNV 1138 AKKVP SLSAKLDNYATNSH RINSN+KNG INEK T ML +KNPEWLKLVNDKIVAHNV Sbjct: 1009 AKKVPASLSAKLDNYATNSHIRINSNIKNGAINEKATGMLTQKNPEWLKLVNDKIVAHNV 1068 Query: 1139 GSAPLSAYDKIGFNQKNMKDYSDSFKFSTRLSNAVKDIKSDFVQFLTNIFSMGS-YSLMK 1197 GS PLS YDKIGFNQKNMKDYSDSFKFST+L+NAVKD S F QFLTN FS S Y L + Sbjct: 1069 GSVPLSEYDKIGFNQKNMKDYSDSFKFSTKLNNAVKDTNSGFTQFLTNAFSTASYYCLAR 1128 Query: 1198 ASVEHGVKNTNTKGGFQKS 1216 + EHG+KN NTKGGFQKS Sbjct: 1129 ENAEHGIKNVNTKGGFQKS 1147
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 32.1 bits (73), Expect = 0.013 Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 18/88 (20%) Query: 19 EVQKRQFQKIEELKTDMQKGVNPFFKVLFDGGNRLFGFPETFIYSSI-------FILFVT 71 + K K+ EL+ +G+ +D F+ SI F + Sbjct: 301 DTAKAIKAKLAELQPFFPQGMK--VLYPYD--------TTPFVQLSIHEVVKTLFEAIML 350 Query: 72 IVLSVILF-QAYEPVLIVAIVIVLVALG 98 + L + LF Q LI I + +V LG Sbjct: 351 VFLVMYLFLQNMRATLIPTIAVPVVLLG 378
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 30.9 bits (69), Expect = 0.006 Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 16/119 (13%) Query: 24 AINTALLPSEYKKLVALGFKKIKTFHQRHDDKEVTEEEKKFATKALREKLRNDRARAEQI 83 A+N AL+ +Y++ + K K D KE+ E++K EK + + +A++ Sbjct: 112 AVNFALMTRDYQEFL----KTKKLIVDAPDPKELEEQKKAL------EKEKEAKEQAQKA 161 Query: 84 QKNIEAFEKKNNSSIQKKAAKHKGLQELNETNANPLNDNPNSNSSTETKSNKDDNFDEM 142 QK+ K +++A L+ L +NP N + N N S K +++ D+M Sbjct: 162 QKD------KREKRKEERAKNRANLENLTNAMSNPQNLSNNKNLSELIKQQRENELDQM 214
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 119 bits (300), Expect = 3e-35 Identities = 43/205 (20%), Positives = 73/205 (35%), Gaps = 10/205 (4%) Query: 27 KLNKANRTFKRAFYL---SMVLNIAAVTSIVMMMPLKKTDIFVYGIDRYTGEFKIVKRSD 83 KL A R+ K A+ + + L A V ++ + PLK + +V +DR TGE I + Sbjct: 24 KLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIAAKLH 83 Query: 84 A-RQIVNSEAVVDSATSKFVSLLFGYSKNSLRDRKDQLMQYCDVSFQTQAMRMFNENIRQ 142 I EAV + +V G+ + + D +M Q + R + + Q Sbjct: 84 GDATITYDEAVRKYFLATYVRYREGWIAAAREEYFDAVMVMSARPEQDRWSRFYKTDNPQ 143 Query: 143 FVDKVRA-EAIISSNIQREKVKNSPLTRLTFFITIKITPDTMENYEYITKKQVTIYYDFA 201 + A + I + +F +T T TI Y Sbjct: 144 SPQNILANRTDVFVEI-KRVSFLGGNVAQVYFTKESVTGSNS----TKTDAVATIKYKVD 198 Query: 202 RGNSSQENLIINPFGFKVFDIQITD 226 S + + NP G++V + Sbjct: 199 GTPSKEVDRFKNPLGYQVESYRADV 223
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 863 bits (2231), Expect = 0.0 Identities = 513/522 (98%), Positives = 515/522 (98%), Gaps = 1/522 (0%) Query: 1 MEQAFFKKIVGCFCLGYLFLSSVIEAAP-DIKNFNRGRVKVVNKKIAYLGDEKPITIWTS 59 M QAFFKKIVGCFCLGYLFLSS IEA DIKNFNRGRVKVVNKKIAYLGDEKPITIWTS Sbjct: 1 MGQAFFKKIVGCFCLGYLFLSSAIEAVALDIKNFNRGRVKVVNKKIAYLGDEKPITIWTS 60 Query: 60 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR 119 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR Sbjct: 61 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR 120 Query: 120 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQVQKAQKDKREKRKEERAKNRANL 179 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQ QKAQKDKREKRKEERAKNRANL Sbjct: 121 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL 180 Query: 180 ENLTNAMSNPQNLSNNKNLSEFIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA 239 ENLTNAMSNPQNLSNNKNLSE IKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA Sbjct: 181 ENLTNAMSNPQNLSNNKNLSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA 240 Query: 240 EEAVKQRAKDKINIKTDKSQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD 299 EEAV+QRAKDKI+IKTDKSQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD Sbjct: 241 EEAVRQRAKDKISIKTDKSQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD 300 Query: 300 NFASAYLTVKLEYPQRHEVSSVIEEELKKREEAKRQRELIKQENLNTTAYINRVMMASNE 359 NFASAYLTVKLEYPQRHEVSSVIEEELKKREEAKRQRELIKQENLNTTAYINRVMMASNE Sbjct: 301 NFASAYLTVKLEYPQRHEVSSVIEEELKKREEAKRQRELIKQENLNTTAYINRVMMASNE 360 Query: 360 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF 419 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF Sbjct: 361 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF 420 Query: 420 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK 479 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK Sbjct: 421 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK 480 Query: 480 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK 521 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK Sbjct: 481 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK 522
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 40.8 bits (95), Expect = 6e-05 Identities = 50/323 (15%), Positives = 116/323 (35%), Gaps = 15/323 (4%) Query: 9 ETSKKTQQHSPQDLSNEETTEANRFEDSSKESKESSDHHLDNPTETKTN-FDEYKSE--E 65 ET++ ++S Q+ E E + E +++ + + + + T+TN + SE E Sbjct: 1035 ETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKE 1094 Query: 66 TQTQMDSEGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEEDNQENN 125 TQT E + + + ++ K+ P +Q + EP E++ N Sbjct: 1095 TQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVN 1154 Query: 126 G--YQEETQMDLIDDETSKKTQQHSPQDLSNEETTKA-NRFEDSSKESKESSDHHLDN-- 180 Q +T ++ +K+T + Q ++ T N ++ + + ++ N Sbjct: 1155 IKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSE 1214 Query: 181 PTETKTNFDEYESEETQTQMDSGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLD 240 + N ++ +++ S +L D ++ + R Q L+ Sbjct: 1215 SSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTNAVLSDARAKAQFVALN 1274 Query: 241 ------EEIQEPNEEDDQENNGYQEETQMDL-IDDETSKKTQQHSPQDLSNEEATEANRF 293 + I + ++ + N + T M+ ++ S Q + T +N Sbjct: 1275 VGKAVSQHISQLEMNNEGQYNVWVSNTSMNKNYSSSQYRRFSSKSTQTQLGWDQTISNNV 1334 Query: 294 EDSSKESKESSDHHLDNPTETKT 316 + + + ++ D T T Sbjct: 1335 QLGGVFTYVRNSNNFDKATSKNT 1357 Score = 39.3 bits (91), Expect = 2e-04 Identities = 34/207 (16%), Positives = 81/207 (39%), Gaps = 6/207 (2%) Query: 974 TPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLEEAKKSVKAYLDC 1033 P ++ + + ++KT + ++ T + +++ +EAK +VKA Sbjct: 1023 APVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQT 1082 Query: 1034 VSQAKTEAEKKECEKLLTPEAKKLLEEAKKSVKA--YLDCVSQAKTEAEKKECEKLLTPE 1091 A++ +E KE + T E + +E K V+ + + K+E + + P+ Sbjct: 1083 NEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQ 1142 Query: 1092 AKKLLEQQALDCLKNAK----TEAEKKRCVKDIPKDLQKKVLAKESVKAYLDCVSRARNE 1147 A+ E +K + T A+ ++ K+ ++++ V +V V N Sbjct: 1143 AEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENT 1202 Query: 1148 KEKKECEKLLTPEAKKLLEEAKESLKA 1174 + + + K + S+++ Sbjct: 1203 TPATTQPTVNSESSNKPKNRHRRSVRS 1229 Score = 37.4 bits (86), Expect = 8e-04 Identities = 32/164 (19%), Positives = 68/164 (41%), Gaps = 9/164 (5%) Query: 713 TPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDC 772 P ++ + + ++KT + ++ T + ++ +EAK +VKA Sbjct: 1023 APVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQT 1082 Query: 773 VSQAKTEAEKKECEKLLTPEAKKLLERQALDCLKNAKTDEERKKCLKDLPKDLQKKVL-- 830 A++ +E KE + T E +E++ ++ KT E K + PK Q + + Sbjct: 1083 NEVAQSGSETKETQTTETKETAT-VEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQP 1141 Query: 831 ----AKESVKAYL--DCVSQAKTEAEKKECEKLLTPEAKKLLEE 868 A+E+ + SQ T A+ ++ K + ++ + E Sbjct: 1142 QAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTE 1185 Score = 36.6 bits (84), Expect = 0.001 Identities = 35/246 (14%), Positives = 89/246 (36%), Gaps = 6/246 (2%) Query: 806 KNAKTDEERKKCLKDLP-KDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKK 864 + ++ E + + P ++ + + ++KT + ++ T + ++ Sbjct: 1008 PSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNRE 1067 Query: 865 LLEEAKESLKAYKDCLSQARNEEERRACEKLLTPEAKKLLEQEVKKSVKAYL-DCISKAR 923 + +EAK ++KA A++ E + + T E + ++E K + Sbjct: 1068 VAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTS 1127 Query: 924 NEREKQECEKLLTPEAKKLLEEAKESLKAYKDCVSRARNEKEKKECEKLLTPEAKKLLEE 983 KQE + + P+A+ E + K+ S+ + ++ K + ++ + E Sbjct: 1128 QVSPKQEQSETVQPQAEPAREN--DPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTE 1185 Query: 984 EAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLEEAKKSVKAYLDCVSQAKTEAEK 1043 + + + T A + + K ++SV++ V A T + Sbjct: 1186 STTVNTGNSVVENPENTTPATTQPTVNSESSNKPK--NRHRRSVRSVPHNVEPATTSSND 1243 Query: 1044 KECEKL 1049 + L Sbjct: 1244 RSTVAL 1249 Score = 33.5 bits (76), Expect = 0.010 Identities = 35/239 (14%), Positives = 83/239 (34%), Gaps = 10/239 (4%) Query: 629 KARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKDLPKD--LQSDILAK 686 + NE+ + E + P A + +N+K + + + + + Q+ +AK Sbjct: 1011 PSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAK 1070 Query: 687 ESLKAYKDCVSQAKTEDEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKE 746 E+ K + E ++ T E K+ E +E K + + + Sbjct: 1071 EAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVS 1130 Query: 747 CEKLLTPEAKKKLEEAKKSVKAYL--DCVSQAKTEAEKKECEKLLTPEAKKLLERQALDC 804 ++ + + + E A+++ + SQ T A+ ++ K + ++ + Sbjct: 1131 PKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVN 1190 Query: 805 LKNA------KTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEKL 857 N+ T + + + K + SV++ V A T + + L Sbjct: 1191 TGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVAL 1249 Score = 32.7 bits (74), Expect = 0.019 Identities = 30/214 (14%), Positives = 66/214 (30%), Gaps = 14/214 (6%) Query: 1053 EAKKLLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLEQQALDCLKNAKTEAE 1112 E + + E K ++ Q TE + E ++ Q + ++ E Sbjct: 1035 ETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKE 1094 Query: 1113 KKRCVKDIPKDLQKKVLAKESVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEEAKESL 1172 + ++K+ AK + + K+E + + P+A+ E Sbjct: 1095 TQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVN 1154 Query: 1173 KAYKDCLSQARNEEERRACEKLLTPEAKKLLEQEVKKSVKAYLDCVSKARNEREKQECEK 1232 + + +++ A + E +EQ V +S + E + Sbjct: 1155 ------IKEPQSQTNTTADTEQPAKETSSNVEQPVTES--------TTVNTGNSVVENPE 1200 Query: 1233 LLTPEARKFLAKQVLSCLEKARNEEERKACLKNI 1266 TP + S K R+ ++ N+ Sbjct: 1201 NTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNV 1234
>PF05211#Neuraminyllactose-binding hemagglutinin Length = 260 Score = 265 bits (678), Expect = 3e-91 Identities = 63/275 (22%), Positives = 119/275 (43%), Gaps = 39/275 (14%) Query: 11 FPQKLYFKTLIALGISSVLVGCTIKPVAEVKPQNQQEKPIQINEKIQTTQKVTPFNFNYS 70 F + K L+ + ++LVGC+ I+T + N+ + Sbjct: 7 FKDFAWKKCLLGASVVALLVGCS-------------------PHIIETNEVALKLNY-HP 46 Query: 71 LHVAQAPQNYRLIGILAPRIQVSDNL-KPYIDKFQDALINQIQTIFEKRGYQTLFF--KD 127 + + I +L P Q SDN+ K Y +KF++ +++ I + +GY+ + D Sbjct: 47 ASEKVQALDEK-ILLLRPAFQYSDNIAKEYENKFKNQTTLKVEQILQNQGYKVINVDSSD 105 Query: 128 ESALTLQDKRKLFAVLDVKGWVGVLEDLKMNLKDPNNPNL--DTLVDQ------SSGSVW 179 + + K++ + + + G + + D K ++ + P L T +D+ +G V Sbjct: 106 KDDFSFAQKKEGYLAVAMNGEIVLRPDPKRTIQKKSEPGLLFSTGLDKMEGVLIPAGFVK 165 Query: 180 FSFYEPESNRVVHDFAVEVGTF---QAITYTYKQSNSGGFNSSNSIIHEDLEKNKEDAIH 236 + EP S + F +++ + T S+SGG S+ N DAI Sbjct: 166 VTILEPMSGESLDSFTMDLSELDIQEKFLKTTHSSHSGGLVSTMV----KGTDNSNDAIK 221 Query: 237 QILNKIYALIMKKAVTELTEKNISQYKEAIDRMKG 271 LNKI+A IM++ +LT+KN+ Y++ +KG Sbjct: 222 SALNKIFANIMQEIDKKLTQKNLESYQKDAKELKG 256
>OMS28PORIN#OMS28 porin signature. Length = 257 Score = 29.8 bits (66), Expect = 0.018 Identities = 13/37 (35%), Positives = 25/37 (67%) Query: 309 EEDLLVSKKRLDKIYRLKQRVLGTLGGINPNFKKEIL 345 +E L+ S++ LD+ + Q+VL + G+NP+ K ++L Sbjct: 188 KETLMASERALDETVQEAQKVLNMVNGLNPSNKDQVL 224
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 2002 bits (5187), Expect = 0.0 Identities = 1165/1292 (90%), Positives = 1224/1292 (94%), Gaps = 1/1292 (0%) Query: 1 MELQQTHRKINRPLVSLALVGLLVSITPQKSHAAFFTTVIIPAIVGGIATGAAVGTVSGL 60 ME+QQTHRKINRPLVSLALVG LVSITPQ+SHAAFFTTVIIPAIVGGIATGAAVGTVSGL Sbjct: 1 MEIQQTHRKINRPLVSLALVGALVSITPQQSHAAFFTTVIIPAIVGGIATGAAVGTVSGL 60 Query: 61 LGWGLKQAEEANKTPDKPDKVWRIQAGRGFNEFPNKEYDLYKSLLSSKIDGGWDWGNAAR 120 LGWGLKQAEEANKTPDKPDKVWRIQAG+GFNEFPNKEYDLYKSLLSSKIDGGWDWGNAAR Sbjct: 61 LGWGLKQAEEANKTPDKPDKVWRIQAGKGFNEFPNKEYDLYKSLLSSKIDGGWDWGNAAR 120 Query: 121 HYWVKGGQWNKLEVDMKDAVGTYKLSGLRNFTGGDLDVNMQKATLRLGQFNGNSFTSFKD 180 HYWVK GQWNKLEVDM++AVGTY LSGL NFTGGDLDVNMQKATLRLGQFNGNSFTS+KD Sbjct: 121 HYWVKDGQWNKLEVDMQNAVGTYNLSGLINFTGGDLDVNMQKATLRLGQFNGNSFTSYKD 180 Query: 181 SADRTTRVDFNAKNISIDNFLEINNRVGSGAGRKASSTVLTLQASEGITSSKNAEISLYD 240 SADRTTRVDFNAKNI IDNFLEINNRVGSGAGRKASSTVLTLQASEGITS +NAEISLYD Sbjct: 181 SADRTTRVDFNAKNILIDNFLEINNRVGSGAGRKASSTVLTLQASEGITSRENAEISLYD 240 Query: 241 GATLNLASNSVKLMGNVWMGRLQYVGAYLAPSYSTINTSKVTGEVNFNHLTVGDRNAAQA 300 GATLNLASNSVKLMGNVWMGRLQYVGAYLAPSYSTINTSKVTGEVNFNHLTVGD NAAQA Sbjct: 241 GATLNLASNSVKLMGNVWMGRLQYVGAYLAPSYSTINTSKVTGEVNFNHLTVGDHNAAQA 300 Query: 301 GIIASKKTYIGTLDLWQSAGLNIIAPPEGGYKDKPNNTNSQSGAKSDKNESAKNDKQDSN 360 GIIAS KT+IGTLDLWQSAGLNIIAPPEGGYKDKPN+ S + + KN+ ++ + +SN Sbjct: 301 GIIASNKTHIGTLDLWQSAGLNIIAPPEGGYKDKPNDKPSNTTQNNAKNDKQESSQNNSN 360 Query: 361 TQVINPPNSGQKTEIQPTQVIDGPFAGAKDTVVNINRINTNADGTIKVGGYTASLTTNAA 420 TQVINPPNS QKTEIQPTQVIDGPFAG K+TVVNINRINTNADGTI+VGG+ ASLTTNAA Sbjct: 361 TQVINPPNSAQKTEIQPTQVIDGPFAGGKNTVVNINRINTNADGTIRVGGFKASLTTNAA 420 Query: 421 NLNIGKGGVNLSNQASGRSLLVENLTGNITVDGALMVNNQVGGYALAGSSANFEFKAGVD 480 +L+IGKGG+NLSNQASGRSLLVENLTGNITVDG L VNNQVGGYALAGSSANFEFKAG D Sbjct: 421 HLHIGKGGINLSNQASGRSLLVENLTGNITVDGPLRVNNQVGGYALAGSSANFEFKAGTD 480 Query: 481 TKNGTIAFNNNISLGRFVNLKASAHTVNFKDIDTGNGGFNTLDFSGVTNKVNINKLITAS 540 TKNGT FNN+ISLGRFVNLK AHT NFK IDTGNGGFNTLDFSGVTNKVNINKLITAS Sbjct: 481 TKNGTATFNNDISLGRFVNLKVDAHTANFKGIDTGNGGFNTLDFSGVTNKVNINKLITAS 540 Query: 541 TNVAVKNFNINELLVKTNGISVGEYTNFSEDIGNQSRINTVRLETGTRSIYSGGVKFKGG 600 TNVAVKNFNINEL+VKTNG+SVGEYT+FSEDIG+QSRINTVRLETGTRSIYSGGVKFKGG Sbjct: 541 TNVAVKNFNINELVVKTNGVSVGEYTHFSEDIGSQSRINTVRLETGTRSIYSGGVKFKGG 600 Query: 601 EKLVINDFYYAPWNYFDARNIKNVEITNKLAFGPQGSPWGTSKLMFNNLTLGPNAVMDYS 660 EKLVINDFYYAPWNYFDARNIKNVEITNKLAFGPQGSPWGT+KLMFNNLTLG NAVMDYS Sbjct: 601 EKLVINDFYYAPWNYFDARNIKNVEITNKLAFGPQGSPWGTAKLMFNNLTLGQNAVMDYS 660 Query: 661 QFSNVTIQGNFVNNQGTINYLVRGGNIETLSVGNAAVMSFNNDIDSATGFYKPLIKINSA 720 QFSN+TIQG+FVNNQGTINYLVRGG + TL+VGNAA M F+N++DSATGFY+PL+KINSA Sbjct: 661 QFSNLTIQGDFVNNQGTINYLVRGGQVATLNVGNAAAMFFSNNVDSATGFYQPLMKINSA 720 Query: 721 QDLIKNKEHVLLKAKIIGYENASLGTNSISNANLIEQFNERLALYNNNNRMDTCVVRNTD 780 QDLIKNKEHVLLKAKIIGY N S GT+SI+N NLIEQF ERLALYNNNNRMD CVVRNTD Sbjct: 721 QDLIKNKEHVLLKAKIIGYGNVSAGTDSIANVNLIEQFKERLALYNNNNRMDICVVRNTD 780 Query: 781 DIKACGMAIGDQAMVNNPDNYKYLIGKAWKNIGISKTANGSKISVRYLGNSTPTDNGGNT 840 DIKACG AIG+Q+MVNNP+NYKYL GKAWKNIGISKTANGSKISV YLGNSTPT+NGGNT Sbjct: 781 DIKACGTAIGNQSMVNNPENYKYLEGKAWKNIGISKTANGSKISVHYLGNSTPTENGGNT 840 Query: 841 TNLPTNTTNNARFARYALIKNAPFAQTNATPNLVAINKHNFGTIESVFELANRSKDIDTL 900 TNLPTNTTN RFA YALIKNAPFA+ +ATPNLVAIN+H+FGTIESVFELANRS DIDTL Sbjct: 841 TNLPTNTTNKVRFASYALIKNAPFARYSATPNLVAINQHDFGTIESVFELANRSNDIDTL 900 Query: 901 YAKSGVQGRDLLQTLLIDSHDAGYARTMIDATNANEITKQLNEANSTLNNIASLEHKTSG 960 YA SG QGRDLLQTLLIDSHDAGYARTMIDAT+ANEITKQLN A +TLNNIASLEHKTSG Sbjct: 901 YANSGAQGRDLLQTLLIDSHDAGYARTMIDATSANEITKQLNTATTTLNNIASLEHKTSG 960 Query: 961 LQTLSLSNAMILNSRLVNLSRRHTNNIDSFAKRLQALKDQRFASLESAAEVLYQFAPKYE 1020 LQTLSLSNAMILNSRLVNLSRRHTN+IDSFAKRLQALKDQRFASLESAAEVLYQFAPKYE Sbjct: 961 LQTLSLSNAMILNSRLVNLSRRHTNHIDSFAKRLQALKDQRFASLESAAEVLYQFAPKYE 1020 Query: 1021 KPTNVWANAIGGASLNSGGNTSLIWGTSAGVDAYLNEKVEAIVGGFGSYGYSSFNNQANS 1080 KPTNVWANAIGG SLNSGGN SL +GTSAGVDAYLN +VEAIVGGFGSYGYSSF+NQANS Sbjct: 1021 KPTNVWANAIGGTSLNSGGNASL-YGTSAGVDAYLNGEVEAIVGGFGSYGYSSFSNQANS 1079 Query: 1081 LNSGANNANFGVYSRIFANRHEFDFEAQGAVGSDQSSLNFKSTLLRDLNQSYNYLAYGAS 1140 LNSGANN NFGVYSRIFAN+HEFDFEAQGA+GSDQSSLNFKS LLRDLNQSYNYLAY A+ Sbjct: 1080 LNSGANNTNFGVYSRIFANQHEFDFEAQGALGSDQSSLNFKSALLRDLNQSYNYLAYSAA 1139 Query: 1141 TRASYGYDFAFFRNALVLKPSVGVSYNHLGSTNFESNSTHKTALKNGASSQHLFNASANV 1200 TRASYGYDFAFFRNALVLKPSVGVSYNHLGSTNF+SNS K ALKNGASSQHLFNASANV Sbjct: 1140 TRASYGYDFAFFRNALVLKPSVGVSYNHLGSTNFKSNSNQKVALKNGASSQHLFNASANV 1199 Query: 1201 EARYYYGDTSYFYMNAGVLQEFANFGSSNAVSLNTFKVNTAHNPLNTHARVMMGGELKLA 1260 EARYYYGDTSYFYMNAGVLQEFANFGSSNAVSLNTFKVN NPLNTHARVMMGGELKLA Sbjct: 1200 EARYYYGDTSYFYMNAGVLQEFANFGSSNAVSLNTFKVNATRNPLNTHARVMMGGELKLA 1259 Query: 1261 KEVFLNLGFIYLHNLISNAGYFASNLGMRYSF 1292 KEVFLNLGF+YLHNLISN G+FASNLGMRYSF Sbjct: 1260 KEVFLNLGFVYLHNLISNIGHFASNLGMRYSF 1291
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 89.3 bits (221), Expect = 3e-23 Identities = 58/241 (24%), Positives = 107/241 (44%), Gaps = 10/241 (4%) Query: 1 MGEKKESQKVAVITGASSGIGLECALMLLDQGYKIYALSRHATLCVALNHALC------E 54 M K K+A ITGA+ GIG A L QG I A+ + + +L E Sbjct: 1 MNAKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAE 60 Query: 55 SIDVDVSDSNALKEVFLNISAKEDHCDVLINSAGYGVFGSVEDTPIDEVKKQFGVNFFAL 114 + DV DS A+ E+ I + D+L+N AG G + +E + F VN + Sbjct: 61 AFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGV 120 Query: 115 CEVVQFCLPLLKNKPHSKIFNLSSIAGRVSMLFLGHYSASKHALEAYSDALRLELKPFNI 174 + + ++ I + S V + Y++SK A ++ L LEL +NI Sbjct: 121 FNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNI 180 Query: 175 QVCLIEPGPVKSNWEKTAFENDERKDSLYALEVNAAKSFYSGV-YQKALSPKAVAQKIVF 233 + ++ PG +++ + + + ++ + + + ++F +G+ +K P +A ++F Sbjct: 181 RCNIVSPGSTETDMQWSLWADENGAEQVIK---GSLETFKTGIPLKKLAKPSDIADAVLF 237 Query: 234 L 234 L Sbjct: 238 L 238
>BINARYTOXINA#Clostridial binary toxin A signature. Length = 454 Score = 26.2 bits (57), Expect = 0.028 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%) Query: 10 YTQYSEKQLFNFLNSIKTKQKRALEKLKEIQAQKQ-RIKKALQFKALHLTENGYTIEEER 68 Y + EK FN + + + +LEK E++ Q ++ K FK + L E G E+ Sbjct: 134 YFESPEKFAFNKEIRTENQNEISLEKFNELKETIQDKLFKQDGFKDVSLYEPGNGDEKPT 193 Query: 69 EILARAKDTKN 79 +L K KN Sbjct: 194 PLLIHLKLPKN 204
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 146 bits (369), Expect = 3e-45 Identities = 45/168 (26%), Positives = 71/168 (42%), Gaps = 22/168 (13%) Query: 22 NMDKETVAGDVSAKTVQSAPVSTETAQEKQEPKQEPAPVVEEKPAIESGTIIASIYFDFD 81 D ++ VS + Q P PAP V+ K T+ + + F+F+ Sbjct: 177 RPDNGMLSLGVSYRFGQGEAA----PVVAPAP--APAPEVQTK----HFTLKSDVLFNFN 226 Query: 82 KYEIKESDQETLDEIVQKAKE---NHMQVLLEGNTDEFGSSEYNQALGVKRTLSVKNALV 138 K +K Q LD++ + V++ G TD GS YNQ L +R SV + L+ Sbjct: 227 KATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSVVDYLI 286 Query: 139 IKGVEKDMIKTISFGETKPKCTQ-----KTR----ECYKENRRVDVKL 177 KG+ D I GE+ P K R +C +RRV++++ Sbjct: 287 SKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEV 334
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 30.4 bits (68), Expect = 0.008 Identities = 20/148 (13%), Positives = 37/148 (25%), Gaps = 9/148 (6%) Query: 27 LERHNKEAEKILLDLGKKNEQVIDLNLEDLPSTEKKEEKVTEKVEEKKDEKVVEKNATDR 86 LE+ + A K + L E ++ E Sbjct: 160 LEKALEGAMNFSTADSAKIKT---LEAEKAALEARQAELEKALEGAMNFSTADSAKIKTL 216 Query: 87 EGDFIDPKEQEESLENIFSSL-NDFQEKTDTNAQKDEQKNEQEEEQRRLKEQQRLRKNQK 145 E + ++ LE N + + +K E Q L++ N Sbjct: 217 EAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFS 276 Query: 146 NQEM-----LKGLQQNLDQFVQKLESVK 168 + L+ + L+ LE Sbjct: 277 TADSAKIKTLEAEKAALEAEKADLEHQS 304
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 42.9 bits (101), Expect = 2e-06 Identities = 28/195 (14%), Positives = 71/195 (36%), Gaps = 19/195 (9%) Query: 27 QIELENQSRF-LAQQKEFEKEVKEKRAQYQSHFKMLEQKEETLKEQEREQKAKFDDAVKQ 85 +++L ++ F ++E + + Q+ + QKE L ++ E+ + Sbjct: 167 ELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRY 226 Query: 86 ASALALQDERAKIIEEARKNAFLEQQKGLELLQKELDEKSKQIQELHQKEAEIERLKREN 145 + ++ R + + LE + + E EL ++++E+++ E Sbjct: 227 ENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQ-ENKYVEAV---NELRVYKSQLEQIESEI 282 Query: 146 NEAESRLKAENEKKLNEKLETERERIEKALHEKNELKFKQQEEQLEMLRNELKNTQRKAE 205 A+ + + NE L+ R+ + +L + + +A Sbjct: 283 LSAKEEYQLVTQLFKNEILDKLRQTTDNI---------GLLTLELAKNEERQQASVIRAP 333 Query: 206 LSSQQFQGEVQELAI 220 +S +VQ+L + Sbjct: 334 VS-----VKVQQLKV 343
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 223 bits (570), Expect = 3e-78 Identities = 65/148 (43%), Positives = 94/148 (63%) Query: 4 IGIYPGTFDPVTNGHIDIIHRSSELFEKLIVAVAHSSAKNPMFSLKERLEMIQLATKSFK 63 IYPG+FDP+T GH+DII R LF+++ VAV + K PMFS++ERLE I A Sbjct: 2 NAIYPGSFDPITFGHLDIIERGCRLFDQVYVAVLRNPNKQPMFSVQERLEQIAKAIAHLP 61 Query: 64 NVECVAFEGLLANLAKEYHCKVLVRGLRVVSDFEYELQMGYANKSLNHELETLYFMPTLQ 123 N + +FEGL N A++ ++RGLRV+SDFE ELQM NK+L +LET++ + + Sbjct: 62 NAQVDSFEGLTVNYARQRQAGAILRGLRVLSDFELELQMANTNKTLASDLETVFLTTSTE 121 Query: 124 NAFISSSIVRSIIAHKGDASHLVPKEIH 151 +F+SSS+V+ + G+ H VP + Sbjct: 122 YSFLSSSLVKEVARFGGNVEHFVPSHVA 149
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 29.4 bits (66), Expect = 0.041 Identities = 12/59 (20%), Positives = 26/59 (44%), Gaps = 2/59 (3%) Query: 56 IGGYMAMNIGANDVSNNVGPAVGSKAISMGGAILIAGICEMLGAIIAGGEVVSTIKGRI 114 G ++M++ A D++ +G+ G I I + G + G E++ + R+ Sbjct: 295 TVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTV--GYELMCALALRV 351
>ARGDEIMINASE#Bacterial arginine deiminase signature. Length = 409 Score = 25.9 bits (57), Expect = 0.041 Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 8/60 (13%) Query: 7 VHIHNLVFETILGILEFERLKPQKISVNLDLFYTQLPN-----KAYLDYIKIQELIQKMM 61 +I +L+ E ++ + L+ + IS + + K Y + I +I KM+ Sbjct: 70 EYIEDLISEVLVSSVA---LENKFISQFILEAEIKTDFTINLLKDYFSSLTIDNMISKMI 126
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 33.1 bits (75), Expect = 0.005 Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 6/111 (5%) Query: 453 KQQEKALKNLDSATQSVGVNAIKEQNKANENAQQETKNSQAQETTSSQAYESVSQA--NT 510 + E + AT S + E +K + ++ KN Q T++Q E +A N Sbjct: 1019 RVDEAPVPPPAPATPSETTETVAENSK--QESKTVEKNEQDATETTAQNREVAKEAKSNV 1076 Query: 511 QATTQANESIKPQTNSTATQQENAKESQAIEQNRATQE--PHTKEEPKKVS 559 +A TQ NE + + + TQ KE+ +E+ + T+E PK S Sbjct: 1077 KANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTS 1127 Score = 32.0 bits (72), Expect = 0.009 Identities = 39/217 (17%), Positives = 82/217 (37%), Gaps = 15/217 (6%) Query: 103 NDNPSEFVESLAQAITETQENANKNEIELTELERKEAELKSKALQEHEE--SQIKRAEEI 160 PSE E++A+ + + KNE + TE + E+ +A + + A+ Sbjct: 1030 PATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSG 1089 Query: 161 SITENENELAKQELEKYALEGENKALEQYNESQNPDTLYEQQVAQEQSKEEWRSNKQDLE 220 S T+ +E +E E KA + ++Q +V + S ++ +S + Sbjct: 1090 SETKETQTTETKETAT--VEKEEKAKVETEKTQE-----VPKVTSQVSPKQEQSETVQPQ 1142 Query: 221 LETLRDNNIKKDLDDESLGLLESLQILRNETNEVANYLRAN-EIDYSRPTGENTTSKIAS 279 E R+N+ ++ + +S +T + A +N E + T NT + + Sbjct: 1143 AEPARENDPTVNIKEP-----QSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVE 1197 Query: 280 LALEENNQLNEKETNTQEQAKHTEKEQEKPKIAPNND 316 + N++ K + + + P+N Sbjct: 1198 NPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNV 1234
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 29.4 bits (66), Expect = 0.020 Identities = 8/61 (13%), Positives = 21/61 (34%), Gaps = 9/61 (14%) Query: 106 KASIAYIRD--------YEMRYVKARDEQGNLIPLKDKEGNLKHYSNG-EVIYENEKVPQ 156 + I ++ Y RY +++ ++ +G +H G V+ + + Sbjct: 236 SSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHAPTGTPVLVDGVRTMT 295 Query: 157 R 157 Sbjct: 296 V 296
>adhesinb#Adhesin B signature. Length = 310 Score = 27.9 bits (62), Expect = 0.033 Identities = 9/45 (20%), Positives = 23/45 (51%), Gaps = 4/45 (8%) Query: 147 PTLKERKALIDFIKENNPSDKITLLESSLSERIVYKRSVSEGLGV 191 T + K L++ +++ +ESS+ +R + ++VS+ + Sbjct: 232 GTPDQIKTLVEKLRKTKV--PSLFVESSVDDRPM--KTVSKDTNI 272
>PF05272#Virulence-associated E family protein Length = 892 Score = 31.6 bits (71), Expect = 0.008 Identities = 22/145 (15%), Positives = 48/145 (33%), Gaps = 31/145 (21%) Query: 319 IAYSPSNMVYKNDTANMF----SSYNFCGEIKFDGFLKRLDNAITKLP------------ 362 + ++ K A + S+ G + FD ++ A+ P Sbjct: 440 LRLRGRWLL-KPRRAALIEALRSAPALAGCVAFDELREQPV-AVRAFPWRKAPGPLEDAD 497 Query: 363 -----EKIKELENSIKITQENIAKYTRLVEQKPPY-PRLEYLQALKWD-----HKTLIDD 411 + ++ + + + + + + P ++++A +WD K L+ Sbjct: 498 VLRLADYVETTYGTGEASAQTTEQAINVAADMNRVHPFRDWVKAQQWDEVPRLEKWLVHV 557 Query: 412 LSKMSKDRDYKPVFNPKSQEVLEKM 436 L K DYKP Q V + + Sbjct: 558 LGKT--PDDYKPRRLRYLQLVGKYI 580
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 89.9 bits (223), Expect = 6e-23 Identities = 38/224 (16%), Positives = 78/224 (34%), Gaps = 29/224 (12%) Query: 131 ESFKKDELDLSSVFEIQRKNTQMAYRLAIGGLIGVISLSVALAFLIPLKQIEPYFVDFAN 190 F++ ++ ++A+ +A + VA+A L PLK +EPY + Sbjct: 12 AYFEEAASWERDKLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDR 71 Query: 191 SDKHFAVVQ--KADTKVDYGEAFLRSLVGSYIMSRETINHIDDKIRLNETIREQSSDEVW 248 + ++ D + Y EA + + +Y+ RE + + + S+ Sbjct: 72 NTGEASIAAKLHGDATITYDEAVRKYFLATYVRYREGWIAAAREEYF-DAVMVMSARPEQ 130 Query: 249 KTLEQLVSGEG-----SIYSNSNMDREIKIINISIYKQGKQQNIAVADIVAKVFDKGYLI 303 + + +I +N D ++I +S + VA+V+ + Sbjct: 131 DRWSRFYKTDNPQSPQNILANRT-DVFVEIKRVSF----------LGGNVAQVYFTKESV 179 Query: 304 SEKRYRVSLIYHFKPVIQFDYSSMP-------KNPTGFIVDKYS 340 + S I++ P KNP G+ V+ Y Sbjct: 180 TGSN---STKTDAVATIKYKVDGTPSKEVDRFKNPLGYQVESYR 220
>FRAGILYSIN#Fragilysin metallopeptidase (M10C) enterotoxin signature. Length = 405 Score = 26.6 bits (58), Expect = 0.002 Identities = 10/29 (34%), Positives = 16/29 (55%) Query: 1 MKNIMRLVFVIVAMFLCACSDKFIEMKKS 29 MKN+ L+ + A L ACS++ + S Sbjct: 9 MKNVKLLLMLGTAALLAACSNEADSLTTS 37
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 35.2 bits (81), Expect = 4e-04 Identities = 9/51 (17%), Positives = 24/51 (47%), Gaps = 4/51 (7%) Query: 125 TVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALEKHKKVVLV 175 +Y + ++ Q+D ++ G +G GK + A+ ++ ++ V + Sbjct: 148 EIYRVLARLMQTDLT----LMITGESGTGKELVARALHDYGKRRNGPFVAI 194
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 35.5 bits (81), Expect = 0.001 Identities = 68/296 (22%), Positives = 117/296 (39%), Gaps = 34/296 (11%) Query: 417 FNEAVSDKVVLDLNYEARSVDQYVSSPKKLDEYF---ELKTQNLNDTAKTELKKKWANLQ 473 F+ A + VV+DL +RS +Q PK E F EL NL + K++ Sbjct: 278 FDRASGEPVVIDLGLHSRSGEQ----PKGFTESFKAPELGVGNLGASEKSD--------- 324 Query: 474 KVFSTKNRLEHIVQDIVLDMAKLPRLKNGKGNAMLVAESVYNACRYFELFLETELKDKVA 533 VF + L H ++ K P +K +G + +E + E Sbjct: 325 -VFLVVSTLLHCIE----GFEKNPEIKPNQGLRFITSEPAH---VMDENGYPIHRPGIAG 376 Query: 534 VITSYEPNITDLKDCGSNESEESYKYRAYCKMLQNFFNEKDEKKALNKTKEFEEEVKKRF 593 V T+Y ITD+ ++ +S + R + + +E+ K+ L T E Sbjct: 377 VETAYTRFITDILGVSADSRPDSNEARLHEFLSDGTIDEESAKQILKDTLTGEMSPLSTD 436 Query: 594 INEPSRMKLLIVVDKLLTGFDAPSLTYLYIDRKMQD-HGLFQAVCRVNRLDGEDKD---- 648 + + KL + D L T + + L + + D + A+ + R G DKD Sbjct: 437 VRRITPKKLRELSDLLRTHLSSAATKQLDMGGVLSDLDTMLVALDKAEREGGVDKDQLKS 496 Query: 649 FGCII--DYSDLFDSLQEAHGDYTNGAFE--NYEREDIQ-GLISDKAQKIKKKLEE 699 F +I Y + D ++ GD N + E Y R + ++ Q+I+K L++ Sbjct: 497 FNSLILKTYRVIEDYVKGREGDTKNSSTEVSPYHRSNFMLSIVEPSLQRIQKHLDQ 552
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 110 bits (276), Expect = 3e-28 Identities = 58/271 (21%), Positives = 112/271 (41%), Gaps = 21/271 (7%) Query: 180 ELEHKKNHIIKRLNMQKERLKEKLEKLEDPKNLQLEAKELQTQASLLLTYQHLINKHESR 239 L+ K + + K + R +K + L + + + LL + + K S Sbjct: 296 RLKSKSSDLQKIVMNNINRCTKKDKILNNTLKKCEDKDIFKLYGELLTANIYALKKGLSH 355 Query: 240 VVLKDFED---KECAIEIDKSMPLNAFINKKFTLSKKKKQKSQFLYLEEENLKEKIAFKE 296 + L ++ I +D++ + + + K K+ + + +E++ + Sbjct: 356 IELANYYSENYDTVKITLDENKTPSQNVQSYYKKYNKLKKSEEAANEQLLQNEEELNYLY 415 Query: 297 NQINYVKGA---------KEESVLEMFM---PLKNSKTKRPMSGYEVLYYKDFKIGLGKN 344 + + + A K+E + ++ + SK + + I +GKN Sbjct: 416 SVLTNINNADNYDEIEEIKKELIETGYIKFKKIYKSKKSKTSKPMHFISKDGIDIYVGKN 475 Query: 345 QKENIKL-LQDARANDLWMHVRDIPGSHLIVFCQKNTPKDEVIMELAKMLIKMQKDAFNS 403 +N L L+ A +D+W H ++IPGSH+IV + P + ++E A + K +S Sbjct: 476 NIQNDYLTLKFANKHDIWFHTKNIPGSHVIVKNIMDIP-ESTLLEAANLAAYYSKSQNSS 534 Query: 404 -YEIDYTQRKFVKIIKGAN---VIYSKYRTI 430 +DYT+ K VK GA VIYS +TI Sbjct: 535 NVPVDYTEVKNVKKPNGAKPGMVIYSTNQTI 565 Score = 35.2 bits (81), Expect = 4e-04 Identities = 21/91 (23%), Positives = 47/91 (51%), Gaps = 3/91 (3%) Query: 46 NTPYIGLSKKPPESVLKNTLALDFCLNKFTKNAKILQANIIDNDRILEIT-AAKDWAYKS 104 N P I L+ + +K + L K+ NAKI+ + I+ DRI+ I + D + Sbjct: 55 NYPRIHLTDLTKPNPIKAPMFCMV-LRKYISNAKIVDIHQINQDRIVVIDFESTDELGFN 113 Query: 105 ENFILRLEMIPKKANLMILDK-EKCVIEAFR 134 + L +E++ + +N+ ++ K + ++++ + Sbjct: 114 SIYSLIIEIMGRHSNMTLIRKRDNIIMDSIK 144
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 150 bits (380), Expect = 1e-49 Identities = 39/140 (27%), Positives = 75/140 (53%), Gaps = 1/140 (0%) Query: 5 EILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEGFADMFDDLAERIVQLGHH 64 L ++ +L+ K+H FHW VKG FF +H+ EE+Y+ A+ D +AER++ +G Sbjct: 15 NSLNTQLSNWFLLYSKLHRFHWYVKGPHFFTLHEKFEELYDHAAETVDTIAERLLAIGGQ 74 Query: 65 PLVTLSEALKLTRVKEETKTSFHSKDIFKEILEDYKHLEKEFKELSNTAEKEGDKVTVTY 124 P+ T+ E + + + + + ++ + ++ DYK + E K + AE+ D T Sbjct: 75 PVATVKEYTEHASITDGGNET-SASEMVQALVNDYKQISSESKFVIGLAEENQDNATADL 133 Query: 125 ADDQLAKLQKSIWMLQAHLA 144 + +++K +WML ++L Sbjct: 134 FVGLIEEVEKQVWMLSSYLG 153
>PF06580#Sensor histidine kinase Length = 349 Score = 29.8 bits (67), Expect = 0.015 Identities = 10/71 (14%), Positives = 25/71 (35%), Gaps = 13/71 (18%) Query: 281 IVLQNFLYNAIDAIEALEESEQ-GQVKIEAFIQNEFIVFTIIDNGKEVENKSALFEPFET 339 +++Q + N I + + Q G++ ++ N + + + G + Sbjct: 258 MLVQTLVENGI--KHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTK------- 308 Query: 340 TKLKGNGLGLA 350 + G GL Sbjct: 309 ---ESTGTGLQ 316
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 361 bits (927), Expect = e-126 Identities = 121/345 (35%), Positives = 192/345 (55%), Gaps = 26/345 (7%) Query: 19 AEKIGDIASVVGVRDNQLIGYGLVIGLNGTGDK-SGSKFTMQSISNMLESVNVKISADDI 77 +I DIAS+ RDNQLIGYGLV+GL GTGD S FT QS+ ML+++ + Sbjct: 28 TSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDSLRSSPFTEQSMRAMLQNLGITTQGGQS 87 Query: 78 KSKNVAAVMITASLPPFARQGDKIDVQISSIGDAKSIQGGTLVMTPLNAVDGNIYALAQG 137 +KN+AAVM+TA+LPPFA G ++DV +SS+GDA S++GG L+MT L+ DG IYA+AQG Sbjct: 88 NAKNIAAVMVTANLPPFASPGSRVDVTVSSLGDATSLRGGNLIMTSLSGADGQIYAVAQG 147 Query: 138 AITSGNSS-----------NLLSAHIINGATIEREVSYDLFHKNAMVLSLKNPNFKNAIQ 186 A+ S SA + NGA IERE+ +VL L+NP+F A++ Sbjct: 148 ALIVNGFSAQGDAATLTQGVTTSARVPNGAIIERELPSKFKDSVNLVLQLRNPDFSTAVR 207 Query: 187 VQNTLNKV----FGNKVAIALDPKTIQITRPERFSMVEFLALVQEIPINYSAKNKIIVDE 242 V + +N +G+ +A D + I + +P + +A ++ + + K++++E Sbjct: 208 VADVVNAFARARYGDPIAEPRDSQEIAVQKPRVADLTRLMAEIENLTVETDTPAKVVINE 267 Query: 243 KSGTIVSGVDIMVHPVVVTSQDITLKITKEPLDNLKNA--------QDLDNNMSLDTAHN 294 ++GTIV G D+ + V V+ +T+++T+ P Q + M++ Sbjct: 268 RTGTIVIGADVRISRVAVSYGTLTVQVTESPQVIQPAPFSRGQTAVQPQTDIMAMQEGSK 327 Query: 295 TLSSNGKNITIAGVVKALQKIGVSAKGMVSILQALKKSGAISAEM 339 G ++ +V L IG+ A G+++ILQ +K +GA+ AE+ Sbjct: 328 VAIVEGPDLR--TLVAGLNSIGLKADGIIAILQGIKSAGALQAEL 370
>SECA#SecA protein signature. Length = 901 Score = 29.8 bits (67), Expect = 0.028 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%) Query: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRG 320 +V T + ++++ + L K L+ + A+I+A A V +AT++A RG Sbjct: 453 LVGTISIEKSELVSNELTKAGIKHNVLNAKFHANE--AAIVAQAGYPAAVTIATNMAGRG 510 Query: 321 LDI 323 DI Sbjct: 511 TDI 513
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 31.3 bits (71), Expect = 0.008 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 7/50 (14%) Query: 30 VAIVGESGSGKSSIANIIMRLNPR----FKPHNGEVLFETTNLLKESEEF 75 + I GESG+GK +A + R F N + L ESE F Sbjct: 163 LMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRD---LIESELF 209
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 38.3 bits (89), Expect = 8e-05 Identities = 44/259 (16%), Positives = 87/259 (33%), Gaps = 60/259 (23%) Query: 118 ISSMLFGIFWRLPK--RLDTKMNLESVHKNELENSFQRYDALGVRFEDIAGVNEVKEELL 175 I + G + LPK L + + E + + + + G + +E+ Sbjct: 91 IKASEKGAYDYLPKPFDLTELIGIIGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIY 150 Query: 176 EVIDYLKNPKKYQDLGIFLPKGVLLIGPPGVGKTMIAKALASEARVPFFYESGSAFSQIY 235 V+ L L +++ G G GK ++A+AL + F I Sbjct: 151 RVLARLMQTD--------LT--LMITGESGTGKELVARALHDYGK-----RRNGPFVAIN 195 Query: 236 VGAGAKKV--HELFMHAK---------------RHAPSIIFIDEIDALGKARGGHRSDER 278 + A + + ELF H K + +F+DEI + + Sbjct: 196 MAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDM--------PMDA 247 Query: 279 EATLNQLLTEM------DGFLQNDEVVVIGATNQMEVMD-EALLRSKRFDRRIF------ 325 + L ++L + +V ++ ATN+ D + + F ++ Sbjct: 248 QTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNK----DLKQSINQGLFREDLYYRLNVV 303 Query: 326 -ISLPDLSERQSILEKLLE 343 + LP L +R + L+ Sbjct: 304 PLRLPPLRDRAEDIPDLVR 322
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 191 bits (487), Expect = 3e-57 Identities = 62/215 (28%), Positives = 95/215 (44%), Gaps = 19/215 (8%) Query: 84 GYDAGNAAN--YLSSQNYQAISVGSGNETGTYSLSGFTNYVGGNLTINLGNSVV-LDLSG 140 G+D GNAA ++ + + V N GTY+LSG N+ GG+L +N+ + + L Sbjct: 112 GWDWGNAARHYWVKDGQWNKLEVDMQNAVGTYNLSGLINFTGGDLDVNMQKATLRLGQFN 171 Query: 141 SNSFTSYQGYHQGKDDVSFNVGTINLNGALEVGNRVGSGAGTHTGTATLNLNANK---VN 197 NSFTSY+ V FN I ++ LE+ NRVGSGAG + L L A++ Sbjct: 172 GNSFTSYKDSADRTTRVDFNAKNILIDNFLEINNRVGSGAGRKASSTVLTLQASEGITSR 231 Query: 198 INSNISAFKTSQVNIGNANSAITIGSVSLSGDVCSSSVSFGTGANCSTSGPSYSFKGTTN 257 N+ IS + + +N+ + NS +G+V G + PSYS T+ Sbjct: 232 ENAEISLYDGATLNLAS-NSVKLMGNVW-----MGRLQYVG-----AYLAPSYSTINTSK 280 Query: 258 ATNTAFSN--ASGSFTFEENATFSGAKLNGGGIHF 290 T N G + + K + G + Sbjct: 281 VTGEVNFNHLTVGDHNAAQAGIIASNKTHIGTLDL 315
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 232 bits (593), Expect = 2e-63 Identities = 59/309 (19%), Positives = 117/309 (37%), Gaps = 35/309 (11%) Query: 2 GGAFTFNKEFSATNNTAFDSGSFNFKGASSFNGTTFSDASYTFNNQATFQNSSFNGGTFT 61 G + + N A G + K + TT ++A + Q + QN+S Sbjct: 310 IGTLDLWQS-AGLNIIAPPEGGYKDKPNDKPSNTTQNNAKN--DKQESSQNNSNTQVINP 366 Query: 62 FNDQNNQANSAQHPQILFENSSFSGNATTLKGFVNFQQAFNNSNHQLIMQNASFNNANFN 121 N Q Q++ + F+G T+ N+N ++ F + Sbjct: 367 PNSAQKT--EIQPTQVI--DGPFAGGKNTVVNINRI-----NTNADGTIRVGGFKASLTT 417 Query: 122 NTGKITINESA-SFNNTAFNTSVNTSNMTITGSVTLSGK---NDLKNGSTLDFGSSQVTL 177 N + I + + +N A S+ N+T G++T+ G N+ G L S+ Sbjct: 418 NAAHLHIGKGGINLSNQASGRSLLVENLT--GNITVDGPLRVNNQVGGYALAGSSANFEF 475 Query: 178 TQGTTFNLTSLGDKNSVTILNSSGGITYNNLLNHALNSLTSALKTNESSLKPQSFAQGLW 237 GT KN N+ I+ +N +++ T+ K ++ G + Sbjct: 476 KAGTD-------TKNGTATFNN--DISLGRFVNLKVDAHTANFKGIDTG-------NGGF 519 Query: 238 DMITYNGVTGQLLSTDATTSKSADSSPSKSSTNSAQVYQVGYKIGDIIYKLQETFSHNSI 297 + + ++GVT ++ + + + S + + + N V G +G+ + ++ S + I Sbjct: 520 NTLDFSGVTNKV-NINKLITASTNVAVKNFNINELVVKTNGVSVGEYTHFSEDIGSQSRI 578 Query: 298 IIQALESGT 306 LE+GT Sbjct: 579 NTVRLETGT 587 Score = 209 bits (534), Expect = 2e-56 Identities = 59/198 (29%), Positives = 99/198 (50%), Gaps = 8/198 (4%) Query: 2217 SALNQIEAVGGNNAIKWLSTLMMETKENPLFAPIYLKNHSLNEILGVAKDLLNTASLISN 2276 + ++ + A G L TL++++ + +A + S NEI T + I++ Sbjct: 895 NDIDTLYANSGAQGRDLLQTLLIDSHDAG-YARTMIDATSANEITKQLNTATTTLNNIAS 953 Query: 2277 PNFRNNATNLLELASYTQQTSRLTKLSDFRAREGESDFSERLLELKNKRFSD-PNPSEVF 2335 + + L L++ SRL LS +S F++RL LK++RF+ + +EV Sbjct: 954 LEHKTSGLQTLSLSNAMILNSRLVNLSRRHTNHIDS-FAKRLQALKDQRFASLESAAEVL 1012 Query: 2336 VKYSQPNKHPNNLWVQGIGGASFISGGNGTLYGLNVGYDRLVK---NVIFGGYVAYGYSG 2392 +++ + P N+W IGG S SGGN +LYG + G D + I GG+ +YGYS Sbjct: 1013 YQFAPKYEKPTNVWANAIGGTSLNSGGNASLYGTSAGVDAYLNGEVEAIVGGFGSYGYSS 1072 Query: 2393 FN--GNIMHSLANNVDVG 2408 F+ N ++S ANN + G Sbjct: 1073 FSNQANSLNSGANNTNFG 1090 Score = 51.2 bits (122), Expect = 5e-08 Identities = 66/409 (16%), Positives = 126/409 (30%), Gaps = 70/409 (17%) Query: 420 GTTNGAYSAYHVYITANLRSGNRIGTGGAANLVFNGVDSVNIANATITQHNAGIY---SS 476 TT ++A ++ I L NR+G+G A + V ++ + ++ NA I + Sbjct: 184 RTTRVDFNAKNILIDNFLEINNRVGSG-AGRKASSTVLTLQASEGITSRENAEISLYDGA 242 Query: 477 SMTFSTQSMDNSHNV---------NGLNPN----GTLLVYGATFTNQAKDGKFIFNAGKA 523 ++ ++ S+ NV L P+ T V G N G A Sbjct: 243 TLNLASNSVKLMGNVWMGRLQYVGAYLAPSYSTINTSKVTGEVNFNHLTVGDHNA-AQAG 301 Query: 524 VFENTNFNGGSYQFSGDSLNFSNNNQFNSGSFEIGAKN----ASFDNANFNNNASFNFNN 579 + + + G+ N G ++ + + +NA + S N+ Sbjct: 302 IIASNKTHIGTLDLWQS--AGLNIIAPPEGGYKDKPNDKPSNTTQNNAKNDKQESSQNNS 359 Query: 580 SSATTSFVGDFTNANS------------------NLQIAGSAVFGNSNNDSQNNANFNNT 621 ++ + N+ + G + N Sbjct: 360 NTQVINPPNSAQKTEIQPTQVIDGPFAGGKNTVVNINRINTNADGTIRVGGFKASLTTNA 419 Query: 622 GSVNI-SGNATFDNVVFNGPT-------NMSVKGQVTLNNI----TLKNLNAPLSFGDGT 669 ++I G N N++V G + +NN L +A F GT Sbjct: 420 AHLHIGKGGINLSNQASGRSLLVENLTGNITVDGPLRVNNQVGGYALAGSSANFEFKAGT 479 Query: 670 ITFNAHSVINIAEAITNGNPITLVSSSKEIEYN-NAFSKNLWQLINYQG-------HGAS 721 T N + N I+ G + L + + + +++ G + Sbjct: 480 DTKNGTATFN--NDISLGRFVNLKVDAHTANFKGIDTGNGGFNTLDFSGVTNKVNINKLI 537 Query: 722 SEKLVSSVGNG------VYDVVYSFNNQTYNFQEIFSSNSISIRRLGVG 764 + +V N V S T+ ++I S + I+ RL G Sbjct: 538 TASTNVAVKNFNINELVVKTNGVSVGEYTHFSEDIGSQSRINTVRLETG 586
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 265 bits (679), Expect = 1e-84 Identities = 60/208 (28%), Positives = 106/208 (50%), Gaps = 7/208 (3%) Query: 1 MYARAFLKRNEFTLSANETYDGNASSINSSNSLLSVLNQRYSYNTWTTSVNGNYGYDFMF 60 +Y+R F ++EF A + SS+N ++LL LNQ Y+Y ++ + +YGYDF F Sbjct: 1091 VYSRIFANQHEFDFEAQGALGSDQSSLNFKSALLRDLNQSYNYLAYSAATRASYGYDFAF 1150 Query: 61 KQKSVVLKPQVGLSYHFIGLSGMKGKMNDAAYKQFLMHSNLSNESVLTLNMGLESRKYFG 120 + ++VLKP VG+SY+ +G + K + ++ + + S++ + + +E+R Y+G Sbjct: 1151 FRNALVLKPSVGVSYNHLGSTNFKSN----SNQKVALKNGASSQHLFNASANVEARYYYG 1206 Query: 121 KNSYYFVTARLGRDLLIKSKGNNVGRFVGEDTLLYRKGEVFNTFASVITGGEMHLWRLVY 180 SY+++ A + ++ N V R NT A V+ GGE+ L + V+ Sbjct: 1207 DTSYFYMNAGVLQEFANFGSSNAVS-LNTFKVNATRNP--LNTHARVMMGGELKLAKEVF 1263 Query: 181 VNAGVGLKMGLQYQDINITGNVGMRVAF 208 +N G L + N+GMR +F Sbjct: 1264 LNLGFVYLHNLISNIGHFASNLGMRYSF 1291
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 549 bits (1417), Expect = 0.0 Identities = 179/582 (30%), Positives = 293/582 (50%), Gaps = 66/582 (11%) Query: 11 VDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFERLDSSDNALIL 70 +++ +L +I LI AG A++V ++L+ K DY LF L D I+ Sbjct: 13 LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWA-KTPDYR-----TLFSNLSDQDGGAIV 66 Query: 71 QHLQQNQIPYKILKDD-TILIPKDKVYEERITLASQGIPKTSKVGFEIFDTKDFGATDFD 129 L Q IPY+ I +P DKV+E R+ LA QG+PK VGFE+ D + FG + F Sbjct: 67 AQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKFGISQFS 126 Query: 130 QNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLKLKPDMKLS 189 + + RA+EGEL+RTIE+L P+ A VH+A+PK S+FV ++ PSASV + L+P L Sbjct: 127 EQVNYQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALD 186 Query: 190 PTQILGIKNLIAAAVPKLTTENVKIVNENGESIGEGDILENSKELALEQLRYKQNFENIL 249 QI + +L+++AV L NV +V+++G + + + + ++L QL++ + E+ + Sbjct: 187 EGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNT--SGRDLNDAQLKFANDVESRI 244 Query: 250 ENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNN-----VVRSEQNLEEKKE 304 + +I IL+PIVG N V A+V A+ DF+ K+ T+E + PN +RS Q ++ Sbjct: 245 QRRIEAILSPIVGNGN-VHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQV 303 Query: 305 GAPKKQVGGVPGVVSN-IGPVQGLKDNKEPEKYEKSQN---------------------- 341 GA GGVPG +SN P P + +QN Sbjct: 304 GAGYP--GGVPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRSTQRNE 361 Query: 342 TTNYEVGKTISEIKGEFGTLVRLNAAVVVDGKYKIVLKDGANTLEYEPLSDESLKKINAL 401 T+NYEV +TI K G + RL+ AVVV+ K L DG + PL+ + +K+I L Sbjct: 362 TSNYEVDRTIRHTKMNVGDIERLSVAVVVNYK---TLADG----KPLPLTADQMKQIEDL 414 Query: 402 VKQAIGYNQNRGDDVAVSNFEFNPTAPMLDNATLSEKIMHKTQKVLGSFTPLIKYILVFI 461 ++A+G++ RGD + V N F+ T E + Q + +++LV + Sbjct: 415 TREAMGFSDKRGDTLNVVNSPFSAVDN-----TGGELPFWQQQSFIDQLLAAGRWLLVLV 469 Query: 462 VLFIFYKKVIVPFSERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNA 521 V +I ++K + P R +E ++ + E + E L+K L+++ +Q Sbjct: 470 VAWILWRKAVRPQLTRRVEEAKAAQEQAQVRQETEEAVEVRLSKDEQLQQRRANQ----- 524 Query: 522 TFSEEEVRYEIVLEKIRGTLKERPDEIAMLFKLLIKDEISSD 563 + E++ ++IR E D + L+I+ +S+D Sbjct: 525 -----RLGAEVMSQRIR----EMSDNDPRVVALVIRQWMSND 557
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 347 bits (892), Expect = e-121 Identities = 121/338 (35%), Positives = 208/338 (61%), Gaps = 4/338 (1%) Query: 8 KQKTQLDELSMSEKIAILLIQVGEDATGEILRHLDIDSITEISKQIVQLNGTDKQIGAAV 67 K+ + L+ +K AILL+ +G + + ++ ++L + I ++ +I +L ++ V Sbjct: 7 KEILDVSALTGKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKDNV 66 Query: 68 LEEFFAIFQSNQYINTGGLEYARELLTRTLGSEEARKVMDKLTKSLQTQKNFAYLGKIKP 127 L EF + + ++I GG++YARELL ++LG+++A +++ L +LQ+ + F ++ + P Sbjct: 67 LLEFKELMMAQEFIQKGGIDYARELLEKSLGTQKAVDIINNLGSALQS-RPFEFVRRADP 125 Query: 128 QQLADFIINEHPQTIALILAHMEAPNAAETLSYFPDEMKAEISIRMANLGEISPQVVKRV 187 + +FI EHPQTIALIL++++ A+ LS P E++ ++ R+A + SP+VV+ V Sbjct: 126 ANILNFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVREV 185 Query: 188 STVLENKLESLTSYK-IEVGGLRAVAEIFNRLGQKSAKTTLARIESVDNKLAGAIKEMMF 246 VLE KL SL+S GG+ V EI N +K+ K + +E D +LA IK+ MF Sbjct: 186 ERVLEKKLASLSSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEIKKKMF 245 Query: 247 TFEDISKLDNFAIREILKVADKKDLSLALKTSTQDLTDKFLNNMSSRAAEQFVEEMQYLG 306 FEDI LD+ +I+ +L+ D ++L+ ALK+ + +K NMS RAA E+M++LG Sbjct: 246 VFEDIVLLDDRSIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDMEFLG 305 Query: 307 AVKIKDVDVAQRKIIEIVQSLQEKG--VIQTGEEEDVI 342 + KDV+ +Q+KI+ +++ L+E+G VI G EEDV+ Sbjct: 306 PTRRKDVEESQQKIVSLIRKLEEQGEIVISRGGEEDVL 343
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 36.7 bits (84), Expect = 5e-05 Identities = 44/207 (21%), Positives = 91/207 (43%), Gaps = 14/207 (6%) Query: 48 PLEKKAIENDLIDCLLKKTDELSSHLVKLQMQFEKAQEES-KALIENAKNDGYKIGFKEG 106 E I + + L L +LQMQ A E+ +A I + G+K G++EG Sbjct: 19 QAEFVPIVEPEETIIEEAEPSLEQQLAQLQMQ---AHEQGYQAGIAEGRQQGHKQGYQEG 75 Query: 107 EEKMRNELTHSVNEEKNQLLHAITALDEKMKKSEDHLMALE----KELSAIAIDIAKEVI 162 + L + E K+Q + + + + + L AL+ L +A++ A++VI Sbjct: 76 ---LAQGLEQGLAEAKSQQAPIHARMQQLVSEFQTTLDALDSVIASRLMQMALEAARQVI 132 Query: 163 LKEVEDNSQKVALALAEELLKNVLDATDIHLKVNPLDYPYLNERLQNASKI---KLESNE 219 + ++ + + + L + L + L+V+P D +++ L + +L + Sbjct: 133 GQTPTVDNSALIKQIQQLLQQEPLFSGKPQLRVHPDDLQRVDDMLGATLSLHGWRLRGDP 192 Query: 220 AISKGGVMITSSNGSLDGNLMERFKTL 246 + GG +++ G LD ++ R++ L Sbjct: 193 TLHPGGCKVSADEGDLDASVATRWQEL 219
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 142 bits (359), Expect = 5e-38 Identities = 99/437 (22%), Positives = 174/437 (39%), Gaps = 85/437 (19%) Query: 3 NIRNFSIIAHIDHGKSTLADCLIAECNAIS---NREMTSQVMDTMDIEKERGITIKAQSV 59 I N ++AH+D GK+TL + L+ AI+ + + + D +E++RGITI+ Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 60 RLNYTLKGEDYVLNLIDTPGHVDFSYEVSRSLCSCEGALLVVDATQGVEAQTIANTYTAL 119 + E+ +N+IDTPGH+DF EV RSL +GA+L++ A GV+AQT + Sbjct: 62 SFQW----ENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALR 117 Query: 120 DNHLEILPVINKIDLPNANVLEVKQDIEDTIGIDCSGANEVSAKARLGIKD--------- 170 + + INKID ++ V QDI++ + + +V + + + Sbjct: 118 KMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDT 177 Query: 171 -------LLEKIITTIPAPSGDFNAPLKALIYD-------------------------SW 198 LLEK ++ + + ++ + Sbjct: 178 VIEGNDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNK 237 Query: 199 F--------------------DNYLGALALVRIMDGSINTEQEILVMGTGKKHGVLGLYY 238 F LA +R+ G ++ + + K + +Y Sbjct: 238 FYSSTHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKI-KITEMYT 296 Query: 239 PNPLKKIPTKSLECGEIGIV---SLGLKSVTDIAVGDTLTDAKNPTPKPIEGFMPAKPFV 295 + GEI I+ L L SV +GDT P + IE P + Sbjct: 297 SINGELCKIDKAYSGEIVILQNEFLKLNSV----LGDTKLL---PQRERIEN---PLPLL 346 Query: 296 FAGLYPIETDRFEDLREALLKLQLNDCALNFEPESSVALGFGFRVGFLGLLHMEVIKERL 355 + P + + E L +ALL++ +D L + +S+ + FLG + MEV L Sbjct: 347 QTTVEPSKPQQREMLLDALLEISDSDPLLRYYVDSATH---EIILSFLGKVQMEVTCALL 403 Query: 356 EREFGLNLIATAPTVVY 372 + ++ + + PTV+Y Sbjct: 404 QEKYHVEIEIKEPTVIY 420 Score = 31.0 bits (70), Expect = 0.015 Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 2/75 (2%) Query: 399 IKEPFVRATIITPSEFLGNLMQLLNNKRGIQEKMEYLNQSRVMLTYSLPSNEIVMDFYDK 458 + EP++ I P E+L + L + V+L+ +P+ I ++ Sbjct: 535 LLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCI-QEYRSD 592 Query: 459 LKSCTKGYASFDYEP 473 L T G + E Sbjct: 593 LTFFTNGRSVCLTEL 607
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 30.3 bits (68), Expect = 0.008 Identities = 9/40 (22%), Positives = 16/40 (40%) Query: 3 NGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITG 42 + A + L+ SNN+++ N G+ R I Sbjct: 2 SLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMA 41
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 40.6 bits (95), Expect = 9e-06 Identities = 58/315 (18%), Positives = 105/315 (33%), Gaps = 67/315 (21%) Query: 37 APYFAKEFTHTNDPTLALISAFLVFMLGFFMRPLGSLFFGKLGDKKGRKTSMVYSIILMA 96 P A +F T + +AF++ G+ +GKL D+ G K +++ II+ Sbjct: 37 LPDIANDFNKPPASTNWVNTAFMLTFSI------GTAVYGKLSDQLGIKRLLLFGIIINC 90 Query: 97 LGSFLLALLPTKEIVGEWAFLFLLLARLLQGFSVGGE------YGVVATYLSELGKNGKK 150 GS + VG F L++AR +QG G VVA Y+ + + Sbjct: 91 FGSVIGF-------VGHSFFSLLIMARFIQG--AGAAAFPALVMVVVARYIPKENRGKAF 141 Query: 151 GFYGSFQYVTLVGGQLLAIFSLFIVENIYTHEQISAFAWRYLFALGGILALLSLFLRNIM 210 G GS + +G + I I+ W YL + I + FL ++ Sbjct: 142 GLIGS---IVAMGEGVGPAIGGMIAHYIH---------WSYLLLIPMITIITVPFLMKLL 189 Query: 211 EETMDSGITSKTTIKEKTQRGSLKELLNHKKALM-------IVFGLTMGGSLCFYTFTVY 263 + + +K + K ++ + T + Sbjct: 190 K-----------------KEVRIKGHFDIKGIILMSVGIVFFMLFTTSYSISFLIVSVLS 232 Query: 264 LKIFLTNSSSFSPK-------ESSFIMLLALSYFILLQPLCG---MLADKIKRTQMLMVF 313 IF+ + + ++ M+ L I+ + G M+ +K L Sbjct: 233 FLIFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTA 292 Query: 314 AIAGLIVTPVVFYGI 328 I +I+ P I Sbjct: 293 EIGSVIIFPGTMSVI 307
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 36.6 bits (84), Expect = 5e-04 Identities = 52/231 (22%), Positives = 79/231 (34%), Gaps = 47/231 (20%) Query: 179 APSDIQKKETK---NDKEKENLKENPI-DESHKTPNEESFLAIPTPYNTTLNALEPQEGL 234 P++IQ N++E + E P+ + TP+E + T + + Sbjct: 999 TPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETT--------ETVAENSKQESKT 1050 Query: 235 VQISSHSPTHYTIYPKRNRFNDLSN-PTNPTLKEI---KQETKEREPTPKKETLT----- 285 V+ + T T + SN N E+ ETKE + T KET T Sbjct: 1051 VEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEE 1110 Query: 286 ------------PTTPATLKP-------VMPASAPIIENDNKTENHKAPNNPTKEENAQE 326 P + + P V P + P END T N K P + T A Sbjct: 1111 KAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPAREND-PTVNIKEPQSQTNTT-ADT 1168 Query: 327 ENIKEMIKEMIKEEEKEAQ-----NAPSFSPETPTSAKKPVMVKELSENKE 372 E + +++ E+ N+ +PE T A V S NK Sbjct: 1169 EQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKP 1219
>MALTOSEBP#Maltose binding protein signature. Length = 396 Score = 27.8 bits (61), Expect = 0.025 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 5/49 (10%) Query: 60 GELVPLEIVVETILSAIKSSDKGIILIDGYPRSVEQMQALDKELSAQNE 108 G+L+ I VE LS I + D L+ P++ E++ ALDKEL A+ + Sbjct: 127 GKLIAYPIAVEA-LSLIYNKD----LLPNPPKTWEEIPALDKELKAKGK 170
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 54.8 bits (132), Expect = 2e-10 Identities = 24/110 (21%), Positives = 44/110 (40%), Gaps = 6/110 (5%) Query: 194 ILIAEDSLSALKTLEKIVQTLELRYLAFPNGKELLDYLYEKEHYQQVGVVITDLEMPIIS 253 IL+A+D + L + + N L ++ +V+TD+ MP + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAA----GDGDLVVTDVVMPDEN 61 Query: 254 GFEVLKTIKADSRTEHLPVIINSSMSSDSNRQLAQSLEADGFVVKSNILE 303 F++L IK LPV++ S+ ++ A A ++ K L Sbjct: 62 AFDLLPRIK--KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLT 109
>LCRVANTIGEN#Low calcium response V antigen signature. Length = 326 Score = 31.2 bits (70), Expect = 6e-04 Identities = 16/33 (48%), Positives = 20/33 (60%) Query: 16 KRKKLLTELAELEAEIKVSSERKSSFNISLSPS 48 R KL ELAEL AE+K+ S ++ N LS S Sbjct: 149 ARSKLREELAELTAELKIYSVIQAEINKHLSSS 181
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 273 bits (700), Expect = 3e-76 Identities = 104/397 (26%), Positives = 182/397 (45%), Gaps = 14/397 (3%) Query: 2774 AGNNSIMWLNALFVAKGGNPLFAPYYLQDNSTEHIVTLMKDITSALGMLSKSNLKNNSTD 2833 +G L L + + +A + S I + T+ L ++ K + Sbjct: 904 SGAQGRDLLQTLLI-DSHDAGYARTMIDATSANEITKQLNTATTTLNNIASLEHKTSGLQ 962 Query: 2834 VLQLNTYTQQMGRLAKLSNFASFDSTDFSERLSSLKNQRFADAIPNAMDVILKYSQRDKL 2893 L L+ RL LS + F++RL +LK+QRFA + +A +V+ +++ + + Sbjct: 963 TLSLSNAMILNSRLVNLSRRHTNHIDSFAKRLQALKDQRFAS-LESAAEVLYQFAPKYEK 1021 Query: 2894 KNNLWATGVGGVSFVENGTGTLYGINVGYDRFIKG---VIVGGYAAYGYSGFYER--ITS 2948 N+WA +GG S G +LYG + G D ++ G IVGG+ +YGYS F + + Sbjct: 1022 PTNVWANAIGGTSLNSGGNASLYGTSAGVDAYLNGEVEAIVGGFGSYGYSSFSNQANSLN 1081 Query: 2949 SKSDNVDVGLYARAFIKKSELTFSVNETWGANKTQISSNDTLLSMINQSYQYSTWTTNAR 3008 S ++N + G+Y+R F + E F G++++ ++ LL +NQSY Y ++ R Sbjct: 1082 SGANNTNFGVYSRIFANQHEFDFEAQGALGSDQSSLNFKSALLRDLNQSYNYLAYSAATR 1141 Query: 3009 VNYGYDFMFKNKGVIVKPQIGLRYYYIGMTGLDGVMNNALYNQFKANADPSKKSVLMIDF 3068 +YGYDF F +++KP +G+ Y ++G T + S + + Sbjct: 1142 ASYGYDFAFFRNALVLKPSVGVSYNHLGSTNFKS----NSNQKVALKNGASSQHLFNASA 1197 Query: 3069 AFENRHYFNKNSYFYAIGGIGRDLLVRSMGDKLVRFIGDNILSYRKGELYNTFANITTGG 3128 E R+Y+ SYFY G+ ++ + V + + R NT A + GG Sbjct: 1198 NVEARYYYGDTSYFYMNAGVLQEFANFGSSNA-VSLNTFKVNATRNP--LNTHARVMMGG 1254 Query: 3129 EIRLFKSFYVNAGVGARFGLDYKMINITGNIGMRLAF 3165 E++L K ++N G L + + N+GMR +F Sbjct: 1255 ELKLAKEVFLNLGFVYLHNLISNIGHFASNLGMRYSF 1291 Score = 40.0 bits (93), Expect = 2e-04 Identities = 58/296 (19%), Positives = 100/296 (33%), Gaps = 31/296 (10%) Query: 248 SNGATTISGV-TFNNNGVLTYKGGNGIGGSITFTNSNINHYKLNLNANSVTFNNSALGSM 306 + G T+ + N N T + G G S+T ++++ K +N ++ S L Sbjct: 386 AGGKNTVVNINRINTNADGTIRVG-GFKASLTTNAAHLHIGKGGINLSNQASGRSLLVEN 444 Query: 307 PNGNANTVGNAYILNASNITFNNLTFNGGWFVFDRANANVHFQGTTTINNPTSPFVNMTG 366 GN G + NN G + ++AN F+ T N T+ F N Sbjct: 445 LTGNITVDGPLRV--------NNQV---GGYALAGSSANFEFKAGTDTKNGTATFNNDIS 493 Query: 367 NVNINANAVFNIQNYTPSIGSAYTLFSMKNGSIAYNDVSNLWNIIRLKNTQATKDNGKNA 426 V I + F+ + ++ V+N NI +L A+ + Sbjct: 494 LGRFVNLKVDAHTANFKGIDTGNGGFNT----LDFSGVTNKVNINKL--ITASTNVAVKN 547 Query: 427 TSNNNTHTYYVTYNLGGTLYNFRQIFSPDSIVLQSVYYGTNNIYYTGSVNIHDNVFNLKN 486 + N ++G + I S I + GT +IY G K Sbjct: 548 FNINELVVKTNGVSVGEYTHFSEDIGSQSRINTVRLETGTRSIYSGG--------VKFKG 599 Query: 487 IKDNRDDTIFYLNGLNTWNYTNARFTQTYGGKNSALVFNAMTPWANGSIPKSNSTV 542 + + +Y WNY +AR + N +PW + +N T+ Sbjct: 600 GEKLVINDFYY----APWNYFDARNIKNVEITNKLAFGPQGSPWGTAKLMFNNLTL 651
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 899 bits (2326), Expect = 0.0 Identities = 284/1038 (27%), Positives = 515/1038 (49%), Gaps = 40/1038 (3%) Query: 1 MYKTAINRPITTLMFALAIVFFGTMGFKKLSVALFPKIDLPTVVVTTTYPGASAEIIESK 60 M I RPI + A+ ++ G + +L VA +P I P V V+ YPGA A+ ++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VTDKIEEAVMGIDGIKKVTSTSSKNVSIVV-IEFELEKPNEEALNDVVNKISSVR-FDDS 118 VT IE+ + GID + ++STS S+ + + F+ + A V NK+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 119 NIKKPSINKFDTDSQAIISLFVSSSSVPAT--TLNDYAKKTIKPMLQKIDGVGGVQLNGF 176 +++ I+ + S ++ S + T ++DY +K L +++GVG VQL G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG- 179 Query: 177 RERQIRIYADPTLMNKYNLTYADLFSTLKAENVEIDGGRIVNS------QRELSILVNAN 230 + +RI+ D L+NKY LT D+ + LK +N +I G++ + Q SI+ Sbjct: 180 AQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 231 SYSVADVEKIQV-----GNHVRLGDIAKIEIGLEEDNTFASFKDKPGVILEIQKIAGANE 285 + + K+ + G+ VRL D+A++E+G E N A KP L I+ GAN Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 286 IEIVDRVYEALKHIQAISP-NYEIRPFLDTTGYIRTSIEDVKFDLVLGAILAVLVVFAFL 344 ++ + L +Q P ++ DTT +++ SI +V L +L LV++ FL Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 345 RNGTITLVSAISIPISVMGTFALIQWMGFSLNMLTMVALTLAIGIIIDDAIVVIENIHK- 403 +N TL+ I++P+ ++GTFA++ G+S+N LTM + LAIG+++DDAIVV+EN+ + Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 404 KLEMGMNKRKASYEGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQSFGITVALAIA 463 +E + ++A+ + + +I ALV I+ +L +VF+P+ G G ++ F IT+ A+A Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 464 LSYVVVVTIIPMVSSVVVNPRHS-------RFYVWSEPFFKALESRYTKLLQWVLNHKLI 516 LS +V + + P + + ++ P + F+ W F + YT + +L Sbjct: 480 LSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539 Query: 517 IFIAVVLVFVGSLFVASKLGMEFMLKEDRGRFLVWLKAKPGVSIDY----MTQKSKIFQK 572 + L+ G + + +L F+ +ED+G FL ++ G + + + Q + + K Sbjct: 540 YLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLK 599 Query: 573 AIEKHAEVEFTTLQVGY-GTTQNPFKAKIFVQLKPLKERKKEHELGQFELMSALRKELKS 631 + + E FT + G QN FV LKP +ER E ++ + EL Sbjct: 600 NEKANVESVFTVNGFSFSGQAQNA--GMAFVSLKPWEERNG-DENSAEAVIHRAKMELGK 656 Query: 632 MPEAKGLENINLSEVSLIGGGGDSSSFQTFVFSHSQEAVDKSVANLKKFLLESPELKGKI 691 + + + N+ + G ++ F + + D + L + + + Sbjct: 657 IRDGF-VIPFNMPAIV---ELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASL 712 Query: 692 EGFHTSTSESQPQLQLKILRQNANKYGVSAQTIGSVVSSAFSGTSQASVFKEDGKEYDMI 751 + E Q +L++ ++ A GVS I +S+A G + + F + G+ + Sbjct: 713 VSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGG-TYVNDFIDRGRVKKLY 771 Query: 752 IRVPDNKRVSVEDIKRLQVRNKYDKLMFLDALVEITETKSPSSISRYNRQRSVTVLAQPK 811 ++ R+ ED+ +L VR+ +++ A + RYN S+ + + Sbjct: 772 VQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAA 831 Query: 812 AGISLGEILTQVSKNTKEWLVEGANYRFTGEADNAKETNGEFLIALATAFVLIYMILAAL 871 G S G+ + + +N L G Y +TG + + + + +A +FV++++ LAAL Sbjct: 832 PGTSSGDAMALM-ENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAAL 890 Query: 872 YESILEPFIIMVTMPLSFSGAFFALGLVHQPLSMFSMIGLILLIGMVGKNATLLIDVANE 931 YES P +M+ +PL G A L +Q ++ M+GL+ IG+ KNA L+++ A + Sbjct: 891 YESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKD 950 Query: 932 -ERKKGLNIQEAILFAGKTRLRPILMTTIAMVCGMLPLALASGDGAAMKSPIGIAMSGGL 990 K+G + EA L A + RLRPILMT++A + G+LPLA+++G G+ ++ +GI + GG+ Sbjct: 951 LMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGM 1010 Query: 991 MISMVLSLLIVPVFYRLL 1008 + + +L++ VPVF+ ++ Sbjct: 1011 VSATLLAIFFVPVFFVVI 1028
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 51.0 bits (122), Expect = 1e-09 Identities = 22/69 (31%), Positives = 34/69 (49%) Query: 40 STGIVDSIKVTEGSVVKKGDVLLLLYNQDKQAQSDSTEQQLIFAKKQYQRYSKIGGAVDK 99 IV I V EG V+KGDVLL L +A + T+ L+ A+ + RY + +++ Sbjct: 103 ENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIEL 162 Query: 100 NTLESYEFN 108 N L + Sbjct: 163 NKLPELKLP 171 Score = 31.3 bits (71), Expect = 0.003 Identities = 21/152 (13%), Positives = 48/152 (31%), Gaps = 25/152 (16%) Query: 70 QAQSDSTEQQLIFAKKQYQR--YSKIGGAVDKNTLESYEFNYRRLESDYAYSIALLNKTI 127 +++ S +++ + ++ K+ D + + E ++ Sbjct: 279 ESEILSAKEEYQLVTQLFKNEILDKLRQTTDN--IGLLTLELAKNEER-------QQASV 329 Query: 128 LRAPFDGVIASKNIQVGEGVSANNTVLLRLVSHARKLVIE--FDSKYINAVKVG------ 179 +RAP + + GV L+ +V L + +K I + VG Sbjct: 330 IRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIK 389 Query: 180 -DTYTYSIDGDSNQHEAKITKIYP--TVDENT 208 + + Y+ G K+ I D+ Sbjct: 390 VEAFPYTRYGYL---VGKVKNINLDAIEDQRL 418
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.0 bits (65), Expect = 0.041 Identities = 16/113 (14%), Positives = 40/113 (35%), Gaps = 16/113 (14%) Query: 208 LARMIALQKKLEQIKTDIKRVTKLYDKGLTTIDDL-----QSLKAQGNLSEY--DILDMQ 260 LAR+ + K+ + + L K + + ++A L Y + ++ Sbjct: 220 LARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIE 279 Query: 261 FALEQNRLTLEYLTNLNVKNLKKTTIDAPNLQLRERQD-LVSLREQISALRYQ 312 + + + +T K +D +LR+ D + L +++ + Sbjct: 280 SEILSAKEEYQLVTQ----LFKNEILD----KLRQTTDNIGLLTLELAKNEER 324
>FLAGELLIN#Flagellin signature. Length = 507 Score = 243 bits (621), Expect = 2e-76 Identities = 126/518 (24%), Positives = 210/518 (40%), Gaps = 22/518 (4%) Query: 2 AFQVNTNINAMNAHVQSALTQNALKTSLERLSSGLRINKAADDASGMTVADSLRSQANSL 61 A +NTN ++ +Q++L +++ERLSSGLRIN A DDA+G +A+ S L Sbjct: 1 AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60 Query: 62 GQAIANTNDGMGIIQVADKAMDEQLKILDTVKVKATQAAQDGQTTESRKAIQSDIVRLIQ 121 QA N NDG+ I Q + A++E L V+ + QA + K+IQ +I + ++ Sbjct: 61 TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120 Query: 122 GLDNIGNTTTYNGQALLSGQFTNKEFQVGAYSNQSIKASIGSTTSDKIGQVRI-ATGALI 180 +D + N T +NG +LS + QVGA ++I + +G G Sbjct: 121 EIDRVSNQTQFNGVKVLSQDN-QMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKE 179 Query: 181 TASGDISLTFKQVDGVNDVTLESVKISSSAGTGIGVLAEVINKNSNQTGVKAYASVITTS 240 GD+ +FK V G + + + K +G V ++ V A +TT Sbjct: 180 ATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTD 239 Query: 241 DVAVQSGSLSNLTLNGIHLGNIADIKKNDSDGRLVAAINAVTSETGVEAYTDQNGRLNLR 300 D N + K A A+ + + + + Sbjct: 240 DAE-----------NNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTID 288 Query: 301 SLDGRGIEIKTDSTSNGPSALTMVNGGQDLTKGSTNYGRLSLTRLDAKSINV------VS 354 + G K +T NG V S + +N + Sbjct: 289 TKTGNDGNGKVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKT 348 Query: 355 ASDSQHLGFTAIGFGESQVAETTVNLRDVTGSFNANVKSASGANYNAVIASGNQSL---G 411 ++S L ++ TVN + T + + + +G + S Sbjct: 349 KNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINE 408 Query: 412 AGVTTLRGAMVVIDIAESAMKMLDKVRSDLGSVQNQMISTVNNISITQVNVKAAESQIRD 471 + + +SA+ +D VRS LG++QN+ S + N+ T N+ +A S+I D Sbjct: 409 DAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIED 468 Query: 472 VDFAEESANFNKNNILAQSGSYAMSQANTVQQNILRLL 509 D+A E +N +K IL Q+G+ ++QAN V QN+L LL Sbjct: 469 ADYATEVSNMSKAQILQQAGTSVLAQANQVPQNVLSLL 506
>OMS28PORIN#OMS28 porin signature. Length = 257 Score = 30.1 bits (67), Expect = 0.005 Identities = 29/112 (25%), Positives = 55/112 (49%), Gaps = 11/112 (9%) Query: 21 NQTTELHHKNPYELLVATILSAQCTDARVNKITPKLFEKYPSVKDLAL-----ASLEEVK 75 N+ E+ K E A ++ + T +I + K P+ K+L L A +E+VK Sbjct: 132 NKVVEMSKKAVQETQKAVSVAGEATFLIEKQI---MLNKSPNNKELELTKEEFAKVEQVK 188 Query: 76 ETIKSVSYFNNKSKHLISMAQKVVRDFKGVIPSTQKELMSLDGVGQKTANVV 127 ET+ + +++ + AQKV+ G+ PS + ++++ V + +NVV Sbjct: 189 ETLMASERALDET---VQEAQKVLNMVNGLNPSNKDQVLAKKDVAKAISNVV 237
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 99 bits (249), Expect = 2e-30 Identities = 25/77 (32%), Positives = 47/77 (61%) Query: 34 LICDYKNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKG 93 + D ++D+ + + ELG T++ + ++LR +GSV+ L AGE +D +NG +I +G Sbjct: 50 AMQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQG 109 Query: 94 EVMVFERNLAIRLNEIL 110 EV+V +R+ +I+ Sbjct: 110 EVVVVADKYGVRITDII 126
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 47.7 bits (113), Expect = 2e-08 Identities = 36/209 (17%), Positives = 71/209 (33%), Gaps = 14/209 (6%) Query: 104 PTPPTPPKPIEKPKPKPKPKPEPKKPNHKHKALKKVEKVEEKKVVEEKKEEKKIVEQKVE 163 P P +PI P P+ + VE E + + E +E +V +K + Sbjct: 41 IELPAPAQPISVTMVAPADLEPPQAV--QPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPK 98 Query: 164 QKKIEEKKPVKKEFDPNQLSFLPKEVAPPRQENNKGLDNQTRRDIDELYGEEFGDLGTAE 223 K + KPVKK P ++V P +N Sbjct: 99 PKPKPKPKPVKKVEQP------KRDVKPVESRPASPFENTAPARPTSSTATAATSKPVTS 152 Query: 224 KDFIRNNLRDIGRITQKYLEYPQVAAYLGQDGTNAVEFYLHPNGDISDLKIIIGSEYKML 283 +++ +YP A L +G V+F + P+G + +++I+ M Sbjct: 153 VA------SGPRALSRNQPQYPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAKPANMF 206 Query: 284 DDNTLKTIQIAYKDYPRPKTKTLIRIRVR 312 + ++ + +P + ++ I + Sbjct: 207 EREVKNAMRRWRYEPGKPGSGIVVNILFK 235
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 31.3 bits (71), Expect = 0.002 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 4/64 (6%) Query: 88 LQSYSVMLFFNLLLLIDILGFLPFSIYHHFMASLIFSALFCISLFLSSPLLGVIALVALS 147 L Y F L+L+ +LPFS S + + +L PLL V AL+A++ Sbjct: 45 LSDYYFEHFSKLMLIPAEQSYLPFSQ----ALSYVVDNVLLEFFYLCFPLLTVAALMAIA 100 Query: 148 SSLL 151 S ++ Sbjct: 101 SHVV 104
>PF07201#Hypersensitivity response secretion protein HrpJ Length = 293 Score = 29.8 bits (67), Expect = 0.023 Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 15/76 (19%) Query: 277 APENSKEKLIEELIANSQLIANEEEREKKLLAEKEKQ--------EAELAKY--KLKDLE 326 S + EE+ E +E L K E ++ +Y K+ +LE Sbjct: 44 GTLQSIADMAEEVTF-----VFSERKELSLDKRKLSDSQARVSDVEEQVNQYLSKVPELE 98 Query: 327 NQKKLKALEAELKKKN 342 ++ + L + L Sbjct: 99 QKQNVSELLSLLSNSP 114
>PF03944#delta endotoxin Length = 633 Score = 32.3 bits (73), Expect = 0.002 Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 3/94 (3%) Query: 68 LHHQEKLLNQCMLSQALKAMGDAELCVFLASVHDGLKGYEEFLSLCQKPHILAVSKIDTA 127 L E+ LNQ + + + A +AEL A+V + + + FL+ + L+++ Sbjct: 94 LRETERFLNQRLNTDTV-ARVNAELTGLQANVEEFNRQVDNFLNPNRNAVPLSITSSVNT 152 Query: 128 THKQVLQKLQEYQQYASQFLALVPLSAKKSQNLN 161 + L +L ++Q Q L L+PL A+ + NL+ Sbjct: 153 MQQLFLNRLPQFQMQGYQLL-LLPLFAQAA-NLH 184
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 29.0 bits (65), Expect = 0.045 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 3/36 (8%) Query: 51 TPKNILMIGSTGVGKTEIARRI---AKIMKLPFVKV 83 T +++ G +G GK +AR + K PFV + Sbjct: 159 TDLTLMITGESGTGKELVARALHDYGKRRNGPFVAI 194
>PF07520#Virulence protein SrfB Length = 1041 Score = 29.2 bits (65), Expect = 0.009 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 4/49 (8%) Query: 121 LEAEDNKIAAIGSGG---NFALSAARALDNFAHLEPRKLVEESLKIAGD 166 E+ ++A I GG + ++ R DN L P + E ++AGD Sbjct: 590 GESPSLRLACIDVGGGTTDLMVTTYRGEDNRV-LHPEQTFREGFRVAGD 637
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 47.5 bits (113), Expect = 4e-08 Identities = 56/292 (19%), Positives = 102/292 (34%), Gaps = 22/292 (7%) Query: 34 ALLSDIAKSFEMESASVGLMITLYAWLVSLGSLPLMLFSAKIERKRLLLFLFALFILSHI 93 LL D+ S +A G+++ LYA + + L S + R+ +LL A + + Sbjct: 30 GLLRDLVHS-NDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYA 88 Query: 94 LSALAWNFWVLLISR--AGIALAHSVFWSITASLVIRVAPIGRKQQALGLLALGSSLAMI 151 + A A WVL I R AGI A ++ + + + + + G ++ M+ Sbjct: 89 IMATAPFLWVLYIGRIVAGITGATG---AVAGAYIADITDGDERARHFGFMSACFGFGMV 145 Query: 152 LGLPLGRIIGQILDWRSTFGVIGGVATLIALLMYKLLP----------HLPSKNAGTLAS 201 G LG ++G + F + L L LLP + N Sbjct: 146 AGPVLGGLMGGF-SPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFR 204 Query: 202 VPILMKRPLLVGIYLLVIMVISGHFTTYSYIEPFIIQISQFSPDITTLMLFVFGLAG-VV 260 M + ++ ++ I F + + L FG+ + Sbjct: 205 WARGMTVVAALMAVFFIMQLVGQVPAALWVI--FGEDRFHWDATTIGISLAAFGILHSLA 262 Query: 261 GSFLFGRLYAK-NSRKFIAFAMILVICPQLLLFVFKNSEWVVFLQIFLWGIG 311 + + G + A+ R+ + MI +L F W+ F + L G Sbjct: 263 QAMITGPVAARLGERRALMLGMIADGT-GYILLAFATRGWMAFPIMVLLASG 313
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 45.1 bits (106), Expect = 3e-07 Identities = 29/171 (16%), Positives = 65/171 (38%), Gaps = 3/171 (1%) Query: 97 DQSKKEVAQTQKEAENARDRANKSGIELEQEEQKTEQEKQKTEQEKQKTSNIETNNQIKV 156 + SK+E +K ++A + ++ ++ + + Q E + + ET Sbjct: 1042 ENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTET- 1100 Query: 157 EQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQEKQKTEQEKQKTNNTQKDLVKKAEQN 216 ++ ++EK K E EK + T +Q+ +QE+ +T Q Q + D ++ Sbjct: 1101 KETATVEKEEKAKVETEKTQEVPKVT-SQVSPKQEQSETVQ-PQAEPARENDPTVNIKEP 1158 Query: 217 CQENHSQFFIKKLGIKGGIAIEIEAECKTPKPTKTNQTPIQPKHLPNSKQP 267 + ++ ++ + +E T T + P + QP Sbjct: 1159 QSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQP 1209
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 28.9 bits (64), Expect = 0.049 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 3/58 (5%) Query: 180 EALRIVDKLEKIGLNGVEEELKKECDLKPNTIKELLEMVQIKQNDL--SHAEFFEKIA 235 + ++KLEK G + E LKKE ++ + I L +K + L HA+ F+KIA Sbjct: 263 DMFEYMNKLEKGGFEKISESLKKE-GVEKDRIDVLKGEKALKASGLVPEHADAFKKIA 319
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 640 bits (1653), Expect = 0.0 Identities = 178/671 (26%), Positives = 305/671 (45%), Gaps = 66/671 (9%) Query: 9 RIRNIGIAAHIDAGKTTTSERILFYTGVSHKIGEVHDGAATMDWMEQEKERGITITSAAT 68 +I NIG+ AH+DAGKTT +E +L+ +G ++G V G D E++RGITI + T Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 69 TCFWKDHQINLIDTPGHVDFTIEVERSMRVLDGAVSVFCSVGGVQPQSETVWRQANKYGV 128 + W++ ++N+IDTPGH+DF EV RS+ VLDGA+ + + GVQ Q+ ++ K G+ Sbjct: 62 SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGI 121 Query: 129 PRIVFVNKMDRIGANFYNVENQIKQRLKANPVPINIPIGAEDTFIGVIDLVQMKAIVWNN 188 P I F+NK+D+ G + V IK++L A V Sbjct: 122 PTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVI--------------------------- 154 Query: 189 ETMGAKYDVEEIPSDLLEKAKQYREKLVEAVAEQDEALMEKYLGGEELSVEEIKKGIKTG 248 K VE P+ + + + + V E ++ L+EKY+ G+ L E+++ Sbjct: 155 -----KQKVELYPNMCVTNFTESEQ--WDTVIEGNDDLLEKYMSGKSLEALELEQEESIR 207 Query: 249 CLNMSLVPMLCGSSFKNKGVQTLLDAVIDYLPAPTEVVDIKGIDPKTEEEVFVKSSDDGE 308 N SL P+ GS+ N G+ L++ + + + T E Sbjct: 208 FHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSSTH-------------------RGQSE 248 Query: 309 FAGLAFKIMTDPFVGQLTFVRVYRGKLESGSYVYNSTKDKKERVGRLLKMHSNKREDIKE 368 G FKI +L ++R+Y G L V S K+K ++ + + + I + Sbjct: 249 LCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKI-KITEMYTSINGELCKIDK 307 Query: 369 VYAGEICAFVG----LKDTLTGDTLCDEKNAVVLERMEFPEPVIHIAVEPKTKADQEKMG 424 Y+GEI L L GDT + ER+E P P++ VEP +E + Sbjct: 308 AYSGEIVILQNEFLKLNSVL-GDTKLLPQR----ERIENPLPLLQTTVEPSKPQQREMLL 362 Query: 425 VALGKLAEEDPSFRVMTQEETGQTLIGGMGELHLEIIVDRLKREFKVEAEIGQPQVAFRE 484 AL ++++ DP R T + ++ +G++ +E+ L+ ++ VE EI +P V + E Sbjct: 363 DALLEISDSDPLLRYYVDSATHEIILSFLGKVQMEVTCALLQEKYHVEIEIKEPTVIYME 422 Query: 485 TIRSSVSKEHKYAKQSGGRGQYGHVFIKLEPKEPGSGYEFVNEISGGVIPKEYIPAVDKG 544 R E+ + + + + + P GSG ++ + +S G + + + AV +G Sbjct: 423 --RPLKKAEYTIHIEVPPNPFWASIGLSVSPLPLGSGMQYESSVSLGYLNQSFQNAVMEG 480 Query: 545 IQEAMQNGVLAGYPVVDFKVTLYDGSYHDVDSSEMAFKIAGSMAFKEASRAANPVLLEPM 604 I+ + G L G+ V D K+ G Y+ S+ F++ + ++ + A LLEP Sbjct: 481 IRYGCEQG-LYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQVLKKAGTELLEPY 539 Query: 605 MKVEVEVPEEYMGDVIGDLNRRRGQINSMDDRLGLKIVNAFVPLVEMFGYSTDLRSATQG 664 + ++ P+EY+ D + I + I++ +P + Y +DL T G Sbjct: 540 LSFKIYAPQEYLSRAYTDAPKYCANIVDTQLKNNEVILSGEIPARCIQEYRSDLTFFTNG 599 Query: 665 RGTYSMEFDHY 675 R E Y Sbjct: 600 RSVCLTELKGY 610
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 49.8 bits (119), Expect = 4e-09 Identities = 51/346 (14%), Positives = 106/346 (30%), Gaps = 54/346 (15%) Query: 5 ILITGAYGMVGQNTALYFKKNKPDV-----------ALLTPKKSELY-----------LL 42 L+TGA G +G + + + V L + EL L Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDLA 62 Query: 43 DKDNVQAYLKEHKPTGIIHCAGRVGGIVANMNDLSTYMVENLLMGLYLFSSALDLGVKKA 102 D++ + + R + ++ + Y NL L + ++ Sbjct: 63 DREGMTDLFASGHFERVFISPHR-LAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 103 INLASSCAYPKFAPNPLKESDLLNGSLEPTNEGYALAKLSVMKYCEYVSAEKGVFYKTLV 162 + +SS Y P D ++ + YA K + S G+ L Sbjct: 122 LYASSSSVYGLNRKMPFSTDDSVDHPVSL----YAATKKANELMAHTYSHLYGLPATGLR 177 Query: 163 PCNLYGEFDKFEEKIAHMIPGLIARMHTAKLKNEKEFVMWGDGTARREYLNAKDLARFIS 222 +YG + + P + T + K ++ G +R++ D+A I Sbjct: 178 FFTVYGPWGR---------PDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAII 228 Query: 223 LAYENIASIPS-----------------VMNVGSGVDYSIEEYYKMIARVLDYKGAFVKD 265 + I + V N+G+ + +Y + + L + Sbjct: 229 RLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNML 288 Query: 266 LSKPVGMQQKLMDISK-QKALKWELEIPLEQGIKEAYEYYLKLLEV 310 +P + + D + + + E ++ G+K +Y +V Sbjct: 289 PLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDFYKV 334
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 87.5 bits (217), Expect = 2e-21 Identities = 46/180 (25%), Positives = 72/180 (40%), Gaps = 19/180 (10%) Query: 7 LITGITGQDGSYLAEYLLNLGYEVHGLKRRSSSINTSRIDHLYEDLHSEHKRRFFLHYGD 66 L+TG G G ++++ LL G++V G+ + + S E L F H D Sbjct: 4 LVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQP---GFQFHKID 60 Query: 67 MTDSSNLIHLIATTKPTEIYNLAAQSHVKVSFETPEYTANADGIGTLRILEAMRILGLEK 126 + D + L A+ ++ + V+ S E P A+++ G L ILE R ++ Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQ- 119 Query: 127 KTRFYQASTSELYGEVLETPQNENTPF-------NPRSPYAVAKMYAFYITKNYREAYNL 179 AS+S +YG N PF +P S YA K + Y Y L Sbjct: 120 --HLLYASSSSVYGL------NRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGL 171
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 32.1 bits (72), Expect = 0.003 Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 8/72 (11%) Query: 190 KEETKEEETITIGDSTNAMKIVKKDIQKGYRALKSSQ--RKWYCLGICSKKSKLSLMPEE 247 KE+ +EE+ I D A+ + Q + ALK + R + K+SK +MP E Sbjct: 365 KEKIREEKQKIILDQAKAL-----ETQYVHNALKRNPVPRNYNYYQAPEKRSK-HIMPSE 418 Query: 248 IFNDKQFTYFKF 259 IF+D FTYF F Sbjct: 419 IFDDGTFTYFGF 430
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 132 bits (333), Expect = 3e-40 Identities = 39/202 (19%), Positives = 73/202 (36%), Gaps = 4/202 (1%) Query: 40 QSVFRLERNRLKIAYKLLGLMSFIALVLAVVLISVLPLQKTEHHF--VDFLNQDKHYAII 97 + K+A+ + G+ +A V + ++ PL+ E + VD + A Sbjct: 22 RDKLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIAAK 81 Query: 98 QRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQN 157 D +I+ +EA+ + + YV RE + ++ V + S+ R+ KT N Sbjct: 82 LHGDATITYDEAVRKYFLATYVRYREGWIAAAREEYFDAVMVMSARPEQDRWSRFYKTDN 141 Query: 158 SIYAQSHLEREVHI-VNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTP 216 Q+ L + V I +A V + + + + + Y D Sbjct: 142 PQSPQNILANRTDVFVEIKRVSFLGGNVAQVYFTKESVTGSNST-KTDAVATIKYKVDGT 200 Query: 217 DFDYASMPKNPTGFKVTRYSIT 238 KNP G++V Y Sbjct: 201 PSKEVDRFKNPLGYQVESYRAD 222
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 430 bits (1108), Expect = e-148 Identities = 167/570 (29%), Positives = 282/570 (49%), Gaps = 59/570 (10%) Query: 10 RLILAIALSFLFIALYSYFFQKPNKT--TTPTTKQETTNNHTATNSSTPNAFSATQTIPQ 67 R +L IAL F+ ++ + Q N TT+ TT +A + P + + Sbjct: 5 RNLLVIALLFVSFMIWQAWEQDKNPQPQAQQTTQTTTTAAGSAADQGVPASGQGKLISVK 64 Query: 68 ENLLSTISFEHARIEIDSLGR--IKQVYLKDKKYLTPKQKGFLEHVSHLFNPKANPQTPL 125 ++L + I++ G + + K L Q L S F +A Sbjct: 65 TDVL--------DLTINTRGGDVEQALLPAYPKELNSTQPFQLLETSPQFIYQAQSGLTG 116 Query: 126 KELPLLAADKLKPLEVRFLDPTLNNKAFNTPYSASKTTLGPNEQLV--LTQDLGALTIIK 183 ++ P A+ +PL +N A G NE V D T K Sbjct: 117 RDGPDNPANGPRPL-------------YNVEKDAYVLAEGQNELQVPMTYTDAAGNTFTK 163 Query: 184 TLTFYDDLHYDLQIAFKSPN--------NIIPSYVITNGYKPVADLDS-----YTFSGVL 230 T Y + + + N + + P D S +TF G Sbjct: 164 TFVLKRG-DYAVNVNYNVQNAGEKPLEISSFGQLKQSITLPPHLDTGSSNFALHTFRGAA 222 Query: 231 LENNDKKIEKIE---DKDAKEIKRFSNTLFLSSVDRYFTTLLFTKDPQGFEALIDSEIGT 287 D+K EK + D + + S +++ + +YF T + G + +G Sbjct: 223 YSTPDEKYEKYKFDTIADNENLNISSKGGWVAMLQQYFATAWIPHN-DGTNNFYTANLG- 280 Query: 288 KNPLGFISLKSEA-----------NLHGYIGPKDYRSLKAISPMLTDVIEYGLITFFAKG 336 N + I KS+ N ++GP+ + A++P L ++YG + F ++ Sbjct: 281 -NGIAAIGYKSQPVLVQPGQTGAMNSTLWVGPEIQDKMAAVAPHLDLTVDYGWLWFISQP 339 Query: 337 VFVLLDYLYQFVGNWGWAIILLTIIVRLILYPLSYKGMVSMQKLKEIAPKMKELQEKYKG 396 +F LL +++ FVGNWG++II++T IVR I+YPL+ SM K++ + PK++ ++E+ Sbjct: 340 LFKLLKWIHSFVGNWGFSIIIITFIVRGIMYPLTKAQYTSMAKMRMLQPKIQAMRERLGD 399 Query: 397 EPQKLQAHMMQLYKKHGANPLGGCLPLILQIPVFFAIYRVLYNAVELKSSEWILWIHDLS 456 + Q++ MM LYK NPLGGC PL++Q+P+F A+Y +L +VEL+ + + LWIHDLS Sbjct: 400 DKQRISQEMMALYKAEKVNPLGGCFPLLIQMPIFLALYYMLMGSVELRQAPFALWIHDLS 459 Query: 457 IMDPYFILPLLMGASMYWHQSVTPSSVTDPMQAKMFKFLPLLFTIFLITFPAGLVLYWTT 516 DPY+ILP+LMG +M++ Q ++P++VTDPMQ K+ F+P++FT+F + FP+GLVLY+ Sbjct: 460 AQDPYYILPILMGVTMFFIQKMSPTTVTDPMQQKIMTFMPVIFTVFFLWFPSGLVLYYIV 519 Query: 517 NNILSVLQQLIINKILENKKRVHAQNKKES 546 +N+++++QQ +I + LE K+ +H++ KK+S Sbjct: 520 SNLVTIIQQQLIYRGLE-KRGLHSREKKKS 548
>DPTHRIATOXIN#Diphtheria toxin signature. Length = 567 Score = 31.6 bits (71), Expect = 0.003 Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 2/76 (2%) Query: 17 IQASIALNCPIINLQYEVIQTPSKGFLNIGKKEAIILASVKESV-KEVQEESVKETNTKE 75 ++ S+ + INL ++VI+ +K + K+ I + ES K V EE K+ +E Sbjct: 223 VRRSVGSSLSCINLDWDVIRDKTKTKIESLKEHGPIKNKMSESPNKTVSEEKAKQY-LEE 281 Query: 76 IHQSAEEKKQNSEIET 91 HQ+A E + SE++T Sbjct: 282 FHQTALEHPELSELKT 297
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 32.9 bits (75), Expect = 0.003 Identities = 32/134 (23%), Positives = 53/134 (39%), Gaps = 25/134 (18%) Query: 216 LSIVGKPNAGKSSLLNAMLLEERA---LVSDIKGTTR-DTIEE-------------VIEL 258 + ++ +AGK++L ++L A L S KGTTR D + Sbjct: 6 IGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW 65 Query: 259 QGHKVRLIDTAGIRESADKIERLGIEKSLKSLENCDIVLGVFDLSKPLEKEDFNLIDTLN 318 + KV +IDT G + ++ R SL L D + + ++ + L L Sbjct: 66 ENTKVNIIDTPGHMDFLAEVYR-----SLSVL---DGAILLISAKDGVQAQTRILFHALR 117 Query: 319 RTKKPCIVVLNKND 332 + P I +NK D Sbjct: 118 KMGIPTIFFINKID 131
>LIPOLPP20#LPP20 lipoprotein precursor signature. Length = 175 Score = 293 bits (752), Expect = e-105 Identities = 174/175 (99%), Positives = 175/175 (100%) Query: 1 MKNQVKKILGMSVIAAMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK 60 MKNQVKKILGMSV+AAMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK Sbjct: 1 MKNQVKKILGMSVVAAMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK 60 Query: 61 YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRS 120 YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRS Sbjct: 61 YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRS 120 Query: 121 ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK 175 ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK Sbjct: 121 ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK 175
>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE signature. Length = 103 Score = 77.0 bits (189), Expect = 6e-22 Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 1/77 (1%) Query: 34 EQKGGEFSKLLKQSINELNNTQEQSDKALADMATGQIK-DLHQAAIAIGKAETSMKLMLE 92 Q F+ L +++ +++TQ + G+ L+ + KA SM++ ++ Sbjct: 27 PQPTISFAGQLHAALDRISDTQTAARTQAEKFTLGEPGVALNDVMTDMQKASVSMQMGIQ 86 Query: 93 VRNKAISAYKELLRTQI 109 VRNK ++AY+E++ Q+ Sbjct: 87 VRNKLVAAYQEVMSMQV 103
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 28.8 bits (64), Expect = 0.012 Identities = 10/38 (26%), Positives = 15/38 (39%) Query: 121 NVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAIGM 158 VN E +L + Y AN Q+A + I + Sbjct: 508 GVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 33.8 bits (77), Expect = 7e-04 Identities = 31/183 (16%), Positives = 74/183 (40%), Gaps = 10/183 (5%) Query: 106 NVELLKKLSPDLVVTFVGNPKAVEHAKKF--GISFLSFQEKTIAEVMEDID---AQAKAL 160 N+ELL ++ P +V G + E + G F K + A L Sbjct: 88 NLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNL 147 Query: 161 EIDASKKLAKMQETLDFIKERL-KDVKKKKGVELFHKAN--KISGHQALDSDILEKGGID 217 + A LA+ ++ + +K R K + + + G +L +IL++ GI Sbjct: 148 QSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGIP 207 Query: 218 N-FGLKYVKFGRADVSVEKIVK-ENPEIIFIWWISPLSPEDVLNNPKFSTIKAIKNKQVY 275 N + + +G VS++++ ++ +++ + + ++ P + + ++ + Sbjct: 208 NAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGRFQ 267 Query: 276 KLP 278 ++P Sbjct: 268 RVP 270
>TYPE3IMPPROT#Type III secretion system inner membrane P protein family signature. Length = 224 Score = 29.4 bits (66), Expect = 0.030 Identities = 9/23 (39%), Positives = 12/23 (52%) Query: 4 LRYKLLLFVFIGFWGLLVLNLFI 26 KL+LFV + W LL L + Sbjct: 195 TPIKLVLFVALDGWTLLSKGLIL 217