PredictBias

		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

		           signature.

		          Length = 478

		

		 Score =  317 bits (815), Expect = e-106

		 Identities = 100/440 (22%), Positives = 197/440 (44%), Gaps = 23/440 (5%)

		

		Query: 47  PLFFGLAVILIFFGIGGIWSAVAPIDGAVHASGEVIVSSNRKVIQHLGGGIISKILVKEG 106

		           P      ++  F  I  I S +  ++    A+G++  S   K I+ +   I+ +I+VKEG

		Sbjct: 57  PRLVAYFIMG-FLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEG 115

		

		Query: 107 QVVKKGEPLVLLSDVNERANLSIIKEKLLSLLVTEARLIAIRGDFDTVEFPDEVKKLSND 166

		           + V+KG+ L+ L+ +   A+    +  LL   + + R   +    +  + P+   KL ++

		Sbjct: 116 ESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPEL--KLPDE 173

		

		Query: 167 E----LANKVMKNQIKLLNSQRKSILGKTDILQQRIKQLHNELVGLNSQLGAVFKQYNLI 222

		                ++ + +     L+  Q  +   +    +  + +   E + + +++        + 

		Sbjct: 174 PYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVE 233

		

		Query: 223 AEELETKRKLLINGHIGKPHILALEKQFAEIEGKVGYYRAAISQVQQKIGENELEIINVK 282

		              L+    LL    I K  +L  E ++ E   ++  Y++ + Q++ +I   + E   V 

		Sbjct: 234 KSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVT 293

		

		Query: 283 NDSQERANTELKEVDTSIADLKERLMVAEDALARTVIRSPQDGIVTDIRYHTEGGVIQSG 342

		              +     +L++   +I  L   L   E+    +VIR+P    V  ++ HTEGGV+ + 

		Sbjct: 294 QLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTA 353

		

		Query: 343 VPIMSIVPSNDDLIIDAKIQTRNIEEIISAQKKDSNIVSIDGLKGLKVKVRLSAYSSRRL 402

		             +M IVP +D L + A +Q ++I  I                 G    +++ A+   R 

		Sbjct: 354 ETLMVIVPEDDTLEVTALVQNKDIGFINV---------------GQNAIIKVEAFPYTRY 398

		

		Query: 403 SLINGIVSHISPDALDDPRLGRYYSVRVVIPKSELVQ-FKNVYLYPGMPAEVYIVTQSRT 461

		             + G V +I+ DA++D RLG  ++V + I ++ L    KN+ L  GM     I T  R+

		Sbjct: 399 GYLVGKVKNINLDAIEDQRLGLVFNVIISIEENCLSTGNKNIPLSSGMAVTAEIKTGMRS 458

		

		Query: 462 LLSFLFMPIIATVDRSFIER 481

		           ++S+L  P+  +V  S  ER

		Sbjct: 459 VISYLLSPLEESVTESLRER 478

		

		

		>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase

		           signature.

		          Length = 261

		

		 Score =  127 bits (319), Expect = 9e-38

		 Identities = 72/251 (28%), Positives = 123/251 (49%), Gaps = 13/251 (5%)

		

		Query: 4   LEGRKFLVTGASGGIGQAIVKTMHKAGAILC---VSGTKKETLEGVAKLYEKNIYILPCN 60

		           +EG+   +TGA+ GIG+A+ +T+   GA +     +  K E +    K   ++    P +

		Sbjct: 6   IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65

		

		Query: 61  LLNTEEVNQLINRASKLMGGLDGLVCNAGVTQDSLLLRMTDEAWQKVVDINLSSTFKLNR 120

		           + ++  ++++  R  + MG +D LV  AGV +  L+  ++DE W+    +N +  F  +R

		Sbjct: 66  VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125

		

		Query: 121 EAYKKLTKNNWGRIINISSIIGLTGNAGQANYAASKAGIIAMSKSIAKEVASRNITVNCI 180

		              K +     G I+ + S          A YA+SKA  +  +K +  E+A  NI  N +

		Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185

		

		Query: 181 APGFMDTKMTKIL-----TEEQK-----KKILDNIPMKRMGTGEEIAAGVLFLASDEAKY 230

		           +PG  +T M   L       EQ      +     IP+K++    +IA  VLFL S +A +

		Sbjct: 186 SPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGH 245

		

		Query: 231 ITGHVLNINGG 241

		           IT H L ++GG

		Sbjct: 246 ITMHNLCVDGG 256

		

		

		>SECYTRNLCASE#Preprotein translocase SecY subunit signature.

		          Length = 437

		

		 Score =  344 bits (884), Expect = e-117

		 Identities = 151/426 (35%), Positives = 243/426 (57%), Gaps = 13/426 (3%)

		

		Query: 19  DLLRRMLFTLIALICYRLGTYVPIPGINLDIINDIF--PKEGAGIFGVFNLFSGGALARM 76

		           DL +++LFTL  ++ YR+GT++PIPG++   +           G+FG+ N+FSGGAL ++

		Sbjct: 13  DLRKKLLFTLAIIVVYRVGTHIPIPGVDYKNVQQCVREASGNQGLFGLVNMFSGGALLQI 72

		

		Query: 77  TILVLNVMPYIVASIVMQLLSSAVKGINEVKNDGELGRRRMNSYIRYMTIVFCIFQSVTI 136

		           TI  L +MPYI ASI++QLL+  +  +  +K +G+ G  ++  Y RY+T+   I Q   +

		Sbjct: 73  TIFALGIMPYITASIILQLLTVVIPRLEALKKEGQAGTAKITQYTRYLTVALAILQGTGL 132

		

		Query: 137 LIGLERMNREGTL-----VVIEPGVMFRTVGIFSLLGGTMFLIWLGEQISASGIGNGISL 191

		           +         G       +V +  +      +  +  GT  ++WLGE I+  GIGNG+S+

		Sbjct: 133 VATARSAPLFGRCSVGGQIVPDQSIFTTITMVICMTAGTCVVMWLGELITDRGIGNGMSI 192

		

		Query: 192 IIFTGIISELHNAFSFLLTLNKNGSMSLLIILFVFVLFFLLLLLIIFVESSYRKVTVQYP 251

		           ++F  I +   +A  + +      +   +    V  +  +++ L++FVE + R++ VQY 

		Sbjct: 193 LMFISIAATFPSAL-WAIKKQGTLAGGWIEFGTVIAVGLIMVALVVFVEQAQRRIPVQYA 251

		

		Query: 252 KKQF-KRLHSDDFTYIPLKINLSGVIPTIFANAILLTPVSIANFYKGHAF--SDFILNYF 308

		           K+   +R +    TYIPLK+N +GVIP IFA+++L  P  +A F  G++   S    N  

		Sbjct: 252 KRMIGRRSYGGTSTYIPLKVNQAGVIPVIFASSLLYIPALVAQFAGGNSGWKSWVEQNLT 311

		

		Query: 309 MANKVVYIAAYLALIVFFNFFYTNFIFNPEENADFLKKNGGFIPGRRPGKHTSDYLQDIV 368

		             +  +YI  Y  LIVFF FFY    FNPEE AD +KK GGFIPG R G+ T++YL  ++

		Sbjct: 312 KGDHPIYIVTYFLLIVFFAFFYVAISFNPEEVADNMKKYGGFIPGIRAGRPTAEYLSYVL 371

		

		Query: 369 FKLTFIGSAYLVVICTVPEVMRYYYDMP--FIFGGTSLLIIVNVTTDTIMQIQSYIFSNR 426

		            ++T+ GS YL +I  VP +    +     F FGGTS+LIIV V  +T+ QI+S +    

		Sbjct: 372 NRITWPGSLYLGLIALVPTMALVGFGASQNFPFGGTSILIIVGVGLETVKQIESQLQQRN 431

		

		Query: 427 YDSWIK 432

		           Y+ +++

		Sbjct: 432 YEGFLR 437

		

		

		>YERSSTKINASE#Yersinia serine/threonine protein kinase signature.

		          Length = 732

		

		 Score = 29.7 bits (66), Expect = 0.002

		 Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 18/88 (20%)

		

		Query: 4   MDPIIGASSRILRSTPRKLNLVADLVRNKKVSFATVQLRFCEKKAAGLIGKVLNS----- 58

		           M P+   S+ + R TP+KL  ++DL+R    S AT QL          +G VL+      

		Sbjct: 430 MSPL---STDVRRITPKKLRELSDLLRTHLSSAATKQLD---------MGGVLSDLDTML 477

		

		Query: 59  -AIANAQYNYGLDIDNLYIKEILIGKSF 85

		            A+  A+   G+D D L     LI K++

		Sbjct: 478 VALDKAEREGGVDKDQLKSFNSLILKTY 505

		

		

		>DNABINDINGHU#Prokaryotic integration host factor signature.

		          Length = 91

		

		 Score = 54.3 bits (131), Expect = 2e-13

		 Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 5/89 (5%)

		

		Query: 2  SKEDIINKLKQACSSQDVEITKSDLSKIFDALMKIIKGKLDEEGEIRLHGIGTFSTAISQ 61

		          +K+D+I K+     ++  E+TK D +   DA+   +   L +  +++L G G F      

		Sbjct: 3  NKQDLIAKV-----AEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERA 57

		

		Query: 62 EKQCRNPQNGEIMTVPQKTRVKFKASQTL 90

		           ++ RNPQ GE + +       FKA + L

		Sbjct: 58 ARKGRNPQTGEEIKIKASKVPAFKAGKAL 86

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 28.6 bits (64), Expect = 0.019

		 Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 1/35 (2%)

		

		Query: 108 LETLRERFKDQKFDVILSDM-APESCGLKSLDHIR 141

		             TL         D++++D+  P+      L  I+

		Sbjct: 36  AATLWRWIAAGDGDLVVTDVVMPDENAFDLLPRIK 70

		

		

		>ACRIFLAVINRP#Acriflavin resistance protein family signature.

		          Length = 1034

		

		 Score = 27.9 bits (62), Expect = 0.030

		 Identities = 19/100 (19%), Positives = 32/100 (32%), Gaps = 10/100 (10%)

		

		Query: 1   MAVENEGVLLV-LSSPSGAGK-------TTILERLLERSTNLVRSVSMTTRKPRPGEING 52

		           +  E++GV L  +  P+GA +         + +  L+     V SV         G+   

		Sbjct: 563 LPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQN 622

		

		Query: 53  KDYFFVTKKEFHELCEAGQ--MLEYARVFENFYGIPKSFI 90

		               FV+ K + E             R       I   F+

		Sbjct: 623 AGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDGFV 662

		

		

		>MICOLLPTASE#Microbial collagenase metalloprotease (M9) signature.

		          Length = 1104

		

		 Score = 35.1 bits (80), Expect = 0.001

		 Identities = 18/103 (17%), Positives = 41/103 (39%), Gaps = 7/103 (6%)

		

		Query: 212 YRMADCLVTFLQEKHPQFIKQLLTEISSGK-EQAVLRFKQLLNNSGIEREFKEWMDVGGG 270

		           Y     L  ++   +     ++   I +            + ++ G+  +++++MD    

		Sbjct: 583 YNYGFALSNYMYNNNMGMFNKMTNYIKNNDVSGYKDYIASMSSDYGLNDKYQDYMDSLLN 642

		

		Query: 271 NKVAADLVPDSEVITLSEHKLQ-INIKYDNKELNQDKLSNIKD 312

		           N    D VP      ++ H+ + IN   +    +  ++SNIKD

		Sbjct: 643 NIDNLD-VPLVSDEYVNGHEAKDINEITN----DIKEVSNIKD 680

		

		

		

		 Score = 33.2 bits (75), Expect = 0.005

		 Identities = 39/273 (14%), Positives = 92/273 (33%), Gaps = 14/273 (5%)

		

		Query: 302 LNQDKLSNIKDTVKGAIRDFDSAFGINNSQPWHNIPSKVNIFVFNTRSNYEDYLKELNID 361

		           + ++K+  +    K     F      + +    N    + + ++N+   Y+         

		Sbjct: 409 VTEEKIKRLYWASKEVKAQFMRVVQNDKALEEGNPDDILTVVIYNSPEEYKLNRIINGFS 468

		

		Query: 362 AKDHSGLTLQGRGSEIHVYFYLQDQFDYSCKTL-KHELGHALTIINSYYGT-GDVLSKA- 418

		             D+ G+ ++  G+    Y    ++  Y+ + L +HE  H L       G  G       

		Sbjct: 469 T-DNGGIYIENIGTFF-TYERTPEESIYTLEELFRHEFTHYLQGRYVVPGMWGQGEFYQE 526

		

		Query: 419 -----MHEGVANYMASVENGKHVNDREDI-EALSTIQRKFLKPDEILRNNNQGDYYYSKA 472

		                  EG A + A       +  R+ + + L+  +   +    +L        +Y+  

		Sbjct: 527 GVLTWYEEGTAEFFAGSTRTDGIKPRKSVTQGLAYDRNNRMSLYGVLHAKYGSWDFYNYG 586

		

		Query: 473 EQVIKFLEHKHPDLLDSFLKSLSMHSTNRPQDNKLFEDFLTKLKGYNQEFKDWVKIQLNG 532

		             +  ++ + +  + +      +    N     K +   ++   G N +++D++   LN 

		Sbjct: 587 FALSNYMYNNNMGMFNKMT---NYIKNNDVSGYKDYIASMSSDYGLNDKYQDYMDSLLNN 643

		

		Query: 533 EGHLRHENESDMQESQTEQPANEERNRDKGSLE 565

		             +L     SD   +  E     E   D   + 

		Sbjct: 644 IDNLDVPLVSDEYVNGHEAKDINEITNDIKEVS 676

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 33.3 bits (76), Expect = 0.003

		 Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 13/76 (17%)

		

		Query: 146 TSGKKVTFDDVAGIDEAKEELVEIVDFLKQRQKFQVLGGKIPKGCLLIGSPGTGKTLLAR 205

		                     + G   A +E+  ++         +++   +    ++ G  GTGK L+AR

		Sbjct: 129 LEDDSQDGMPLVGRSAAMQEIYRVLA--------RLMQTDLT--LMITGESGTGKELVAR 178

		

		Query: 206 AI---AGEANVPFFSI 218

		           A+       N PF +I

		Sbjct: 179 ALHDYGKRRNGPFVAI 194

		

		

		>OMPADOMAIN#OMPA domain signature.

		          Length = 346

		

		 Score = 88.8 bits (220), Expect = 7e-24

		 Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 9/122 (7%)

		

		Query: 43  RVFFDYDKSDISEAGADTLLDVMEVLQ--DDPNVKVTLIGHTDNRGSYEYNVALGARRAD 100

		            V F+++K+ +   G   L  +   L   D  +  V ++G+TD  GS  YN  L  RRA 

		Sbjct: 220 DVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQ 279

		

		Query: 101 AAKNFMVS--CTPYLENRIKTASKGETEPLV-YVADDSKNSKYEKE-HAKNRRVEFSFSG 156

		           +  ++++S        ++I     GE+ P+     D+ K      +  A +RRVE    G

		Sbjct: 280 SVVDYLISKGIPA---DKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEVKG 336

		

		Query: 157 MK 158

		           +K

		Sbjct: 337 IK 338

		

		

		>FbpA_PF05833#Fibronectin-binding protein

		          Length = 577

		

		 Score = 31.0 bits (70), Expect = 0.011

		 Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 1/63 (1%)

		

		Query: 7   LKEVLHRLKNIENTLKVLDQSQLNVEDKVEQMGLLEEIRHEIISHNIIKESLAEAGTPSN 66

		            +    +L   E  L  L     N+ +  +    +EEI+ E+I    IK         S 

		Sbjct: 397 EEAANEQLLQNEEELNYLYSVLTNINN-ADNYDEIEEIKKELIETGYIKFKKIYKSKKSK 455

		

		Query: 67  KKK 69

		             K

		Sbjct: 456 TSK 458

		

		

		>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein

		           signature.

		          Length = 347

		

		 Score =  465 bits (1197), Expect = e-167

		 Identities = 193/348 (55%), Positives = 257/348 (73%), Gaps = 5/348 (1%)

		

		Query: 14  FFTFKGLFASDIAIDLGTANTLVYQKNQGIVLDEPSVVARIKEKGSYIPY--AFGKKAKM 71

		              F+G+F++D++IDLGTANTL+Y K QGIVL+EPSVVA  +++        A G  AK 

		Sbjct: 2   LKKFRGMFSNDLSIDLGTANTLIYVKGQGIVLNEPSVVAIRQDRAGSPKSVAAVGHDAKQ 61

		

		Query: 72  MLGKTPGEIEAIRPLKDGVIADFKSAEEMLKYFIRSANTKLTVN-KPNIIICVPSGSTPV 130

		           MLG+TPG I AIRP+KDGVIADF   E+ML++FI+  ++   +   P +++CVP G+T V

		Sbjct: 62  MLGRTPGNIAAIRPMKDGVIADFFVTEKMLQHFIKQVHSNSFMRPSPRVLVCVPVGATQV 121

		

		Query: 131 ERRAIQDAAESAGANEVFLIEEPMAAAIGAGLPVTEPEGSMVVDIGGGTTEVAIISLGGI 190

		           ERRAI+++A+ AGA EVFLIEEPMAAAIGAGLPV+E  GSMVVDIGGGTTEVA+ISL G+

		Sbjct: 122 ERRAIRESAQGAGAREVFLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNGV 181

		

		Query: 191 VYSRSARVGGDIMDEAIRSYIRENHKLLIGETTAEKIKKSLGSASLPDENNKEWMMVKGR 250

		           VYS S R+GGD  DEAI +Y+R N+  LIGE TAE+IK  +GSA  P +  +E + V+GR

		Sbjct: 182 VYSSSVRIGGDRFDEAIINYVRRNYGSLIGEATAERIKHEIGSA-YPGDEVRE-IEVRGR 239

		

		Query: 251 DLVSGMPKEMLLSEYQVAESLIEPVHQIISAIKTALESTPPELSSDIVDKGIVLSGGGGL 310

		           +L  G+P+   L+  ++ E+L EP+  I+SA+  ALE  PPEL+SDI ++G+VL+GGG L

		Sbjct: 240 NLAEGVPRGFTLNSNEILEALQEPLTGIVSAVMVALEQCPPELASDISERGMVLTGGGAL 299

		

		Query: 311 LRNLGKVISETTKLPVHVADDPLCCVALGSGKVLENMDYFSHVLFKQD 358

		           LRNL +++ E T +PV VA+DPL CVA G GK LE +D     LF ++

		Sbjct: 300 LRNLDRLLMEETGIPVVVAEDPLTCVARGGGKALEMIDMHGGDLFSEE 347

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 37.5 bits (87), Expect = 2e-04

		 Identities = 50/275 (18%), Positives = 102/275 (37%), Gaps = 44/275 (16%)

		

		Query: 553 SEKEKLLSMENEIGKRVIGQKDAIEAISNAVRRSRSGVQDTNRPFGSFLFLGPTGVGKTE 612

		             +   L  +++ G  ++G+  A++ I   + R    +  T+      +  G +G GK  

		Sbjct: 123 KRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLAR----LMQTDLTL---MITGESGTGKEL 175

		

		Query: 613 LAKALAEFLFDDQSALLRFDMSEYMEKHSVSKLIGAPPGYVGYEQGGRLTEAVRRRPYQV 672

		           +A+AL ++        +  +M+        S+L        G+E+G   T A  R   + 

		Sbjct: 176 VARALHDYGKRRNGPFVAINMAAIPRDLIESEL-------FGHEKGA-FTGAQTRSTGRF 227

		

		Query: 673 -------ILFDEIEKANPDIFNLLLQILDEG---RLTDSHGKLIDFRNTILILTSNLGAE 722

		                  +  DEI     D    LL++L +G    +        D R   ++  +N   +

		Sbjct: 228 EQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVR---IVAATNKDLK 284

		

		Query: 723 IMLKGVADFVKSEVMQIVKSAFRPEFLNRLDEIIIFHSLTKDDIYKIIDVQFLYLQKIIV 782

		             +               +  FR +   RL+ + +     +D    I D+   ++Q+   

		Sbjct: 285 QSIN--------------QGLFREDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEK 330

		

		Query: 783 KRKLSISLSQEAKELIAQAGYDPEYGVRPLKRVIQ 817

		           +        QEA EL+    +     VR L+ +++

		Sbjct: 331 EGLDVKRFDQEALELMKA--HPWPGNVRELENLVR 363

		

		

		>BONTOXILYSIN#Bontoxilysin signature.

		          Length = 1196

		

		 Score = 34.1 bits (78), Expect = 0.006

		 Identities = 32/166 (19%), Positives = 62/166 (37%), Gaps = 12/166 (7%)

		

		Query: 6   NVNTESLFKLVNQENQKEKAKIKEFIR-----YFYNFVYNSDLKINDKFLLYVVEDAYNF 60

		              TE  F  ++ E+Q    ++  F+       F   +Y   +   +K++  +      F

		Sbjct: 723 RETTEKTFIDLSNESQISMNRVDNFLNKASICVFVEDIYPKFISYMEKYINNINIKTREF 782

		

		Query: 61  IFKKEK--EESKLMVSNVNDIPGIEGDFTTIKIINNDMPFLVDSVIATIKSHDLTICYYS 118

		           I +     +  K ++ N      I+  F  I+ I N     V+ V+  I S    + + S

		Sbjct: 783 IQRCTNINDNEKSILINSYTFKTIDFKFLDIQSIKNFFNSQVEQVMKEILSPYQLLLFAS 842

		

		Query: 119 -----NSVINIQRKSGLINEICNLEENNGTKESVIYVIIKGISNSF 159

		                N + +I  K+ LI    ++E   G     +Y+     +  F

		Sbjct: 843 KGPNSNIIEDISGKNTLIQYTESIELVYGVNGESLYLKSPNETIKF 888

		

		

		>TATBPROTEIN#Bacterial sec-independent translocation TatB protein

		          signature.

		          Length = 171

		

		 Score = 47.3 bits (112), Expect = 6e-10

		 Identities = 17/71 (23%), Positives = 37/71 (52%), Gaps = 4/71 (5%)

		

		Query: 1  MFSIGLSEILVVVLVSIIVLDKNKVPVFI----DLIKNIYRYLTIIKSKARRLLKDAGIE 56

		          MF IG SE+L+V ++ ++VL   ++PV +      I+ +    T ++++  + LK    +

		Sbjct: 1  MFDIGFSELLLVFIIGLVVLGPQRLPVAVKTVAGWIRALRSLATTVQNELTQELKLQEFQ 60

		

		Query: 57 ELYKEYNTEKV 67

		          +  K+     +

		Sbjct: 61 DSLKKVEKASL 71

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 71.0 bits (174), Expect = 2e-15

		 Identities = 25/126 (19%), Positives = 53/126 (42%), Gaps = 3/126 (2%)

		

		Query: 7   LLEARLKAEYYTVIVAHDSEEAIDLVAKQQPDIILLDIMMPKINGFKVCKNLKSTPLTTH 66

		           +L   L    Y V +  ++      +A    D+++ D++MP  N F +   +K       

		Sbjct: 18  VLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDLLPRIKK--ARPD 75

		

		Query: 67  IPIIMVTALHDTHDRVQGINAGADDFLTKPID-ETALSARIKSLTRLKMVIDELRLRGET 125

		           +P+++++A +     ++    GA D+L KP D    +    ++L   K    +L    + 

		Sbjct: 76  LPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKRRPSKLEDDSQD 135

		

		Query: 126 NAEICG 131

		              + G

		Sbjct: 136 GMPLVG 141

		

		

		

		 Score = 51.0 bits (122), Expect = 5e-09

		 Identities = 26/112 (23%), Positives = 49/112 (43%), Gaps = 2/112 (1%)

		

		Query: 149 ILVVDEDIFQAEQIHNVLKQRFKLINILNDPMEALKVGIEDNYDLIISDMQFSETDGLRL 208

		           ILV D+D      ++  L +    + I ++     +     + DL+++D+   + +   L

		Sbjct: 6   ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65

		

		Query: 209 CSEFRSKVETRYTPILILSEDYNKNNLVKALDVGANDYLTVPLDESELIARV 260

		               +        P+L++S        +KA + GA DYL  P D +ELI  +

		Sbjct: 66  LPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGII 115

		

		

		>SECFTRNLCASE#Bacterial translocase SecF protein signature.

		          Length = 333

		

		 Score =  223 bits (570), Expect = 9e-74

		 Identities = 92/302 (30%), Positives = 169/302 (55%), Gaps = 23/302 (7%)

		

		Query: 3   VRLIPDNLNIKFSKYRKLTALISIILVIFSLFIVVLRGVNLGIDFTGGILMEIKSS---- 58

		           ++L+P+  N  F +++  T   +I+++I S+ + ++ G+N GIDF GG  +  +S+    

		Sbjct: 5   LKLVPEKTNFDFFRWQWATFGAAIVMMIASVILPLVIGLNFGIDFKGGTTIRTESTTAID 64

		

		Query: 59  -SEDHAVLNILKENGFTIQSSKAGN--------NLVMYFREEGNEGK---------IKKI 100

		                A L  L+     I   +  +         + +  +E+G   +         + K+

		Sbjct: 65  VGVYRAALEPLELGDVIISEVRDPSFREDQHVAMIRIQMQEDGQGAEGQGAQGQELVNKV 124

		

		Query: 101 KSVLEEKLGSSISYRKIDYIGPRISSTQILEGILSMFIAIVGIFFYVWFRFNWQCGFGGT 160

		           ++ L   +  ++     + +GP++S   +   + S+  A V I FY+W RF WQ   G  

		Sbjct: 125 ETALT-AVDPALKITSFESVGPKVSGELVWTAVWSLLAATVVIMFYIWVRFEWQFALGAV 183

		

		Query: 161 IALIHDVILTVGFVSLTGIKFNISSVAALLTVIGYSINNSVVIYDRIREYQKSGKNRQMS 220

		           +AL+HDV+LTVG  ++  +KF++++VAALLT+ GYSIN++VV++DR+RE     K   + 

		Sbjct: 184 VALVHDVLLTVGLFAVLQLKFDLTTVAALLTITGYSINDTVVVFDRLRENLIKYKTMPLR 243

		

		Query: 221 DIVDASINVTLFRTVLTSGTTLLATIPLTLICTDTVRDFSLIIFFGILIGTCSAIFISAP 280

		           D+++ S+N TL RTV+T  TTLLA +P+ +   D +R F   + +G+  GT S+++++  

		Sbjct: 244 DVMNLSVNETLSRTVMTGMTTLLALVPMLIWGGDVIRGFVFAMVWGVFTGTYSSVYVAKN 303

		

		Query: 281 IL 282

		           I+

		Sbjct: 304 IV 305

		

		

		>60KDINNERMP#60kDa inner membrane protein signature.

		          Length = 548

		

		 Score =  277 bits (709), Expect = 3e-88

		 Identities = 153/579 (26%), Positives = 262/579 (45%), Gaps = 58/579 (10%)

		

		Query: 1   MSEARNLILAAIL--SILIIVSWRIIYDNFLNAEQDHPLIENIEHIESFNDLAPVIHQSR 58

		           M   RNL++ A+L  S +I  +W    +    A+Q            + +   P   Q +

		Sbjct: 1   MDSQRNLLVIALLFVSFMIWQAWEQDKNPQPQAQQTTQTTTTAAGSAA-DQGVPASGQGK 59

		

		Query: 59  SEIINSTREQRINLTNNMVKGSISLKGARFDDLILTNYCLEPDPSSPQVVLLSPAESKDV 118

		                      I++  +++  +I+ +G   +  +L  Y  E +  S Q   L     + +

		Sbjct: 60  ----------LISVKTDVLDLTINTRGGDVEQALLPAYPKELN--STQPFQLLETSPQFI 107

		

		Query: 119 YFAEFGWLDPNGK-TKVPDSKTFWQAEK-----TELTNQKAVNLFWNNENGIVFRMKVSL 172

		           Y A+ G    +G        +  +  EK      E  N+  V + + +  G  F     L

		Sbjct: 108 YQAQSGLTGRDGPDNPANGPRPLYNVEKDAYVLAEGQNELQVPMTYTDAAGNTFTKTFVL 167

		

		Query: 173 D-NNYMFKVEQIVENNTKDNVVLVPYGKINRKRDNINESYWISHEGILGAF--------D 223

		              +Y   V   V+N  +  + +  +G++ +           S    L  F        D

		Sbjct: 168 KRGDYAVNVNYNVQNAGEKPLEISSFGQLKQSITLPPHLDTGSSNFALHTFRGAAYSTPD 227

		

		Query: 224 NKLEEWTYKNVAKKHLIKASTSKKNWFGFADKYWLTAIIPEKFDKTNVSIKHTNANNVDK 283

		            K E++ +  +A    +   +SK  W     +Y+ TA IP   D TN        N +  

		Sbjct: 228 EKYEKYKFDTIADNENLN-ISSKGGWVAMLQQYFATAWIPHN-DGTNNFYTANLGNGI-- 283

		

		Query: 284 FQVDFVKPYKNILPGTSASNVNYFFAGAKKLNLLDYYKSTLNIPLFDKAVDFGVLYFITK 343

		             + +      + PG + +  +  + G +        K     P  D  VD+G L+FI++

		Sbjct: 284 AAIGYKSQPVLVQPGQTGAMNSTLWVGPE-----IQDKMAAVAPHLDLTVDYGWLWFISQ 338

		

		Query: 344 PVFLLLEYFNFVLKNFGLAILLLTLVIKLLMLPLSNRSYVSMFKMKSLQPEVARIKELYK 403

		           P+F LL++ +  + N+G +I+++T +++ +M PL+   Y SM KM+ LQP++  ++E   

		Sbjct: 339 PLFKLLKWIHSFVGNWGFSIIIITFIVRGIMYPLTKAQYTSMAKMRMLQPKIQAMRERLG 398

		

		Query: 404 NDSLKQHKETIALFKKNNVNPMSSILPILVQIPVFFALYKVLFVTIEMRHAPFCLWIKDL 463

		           +D  +  +E +AL+K   VNP+    P+L+Q+P+F ALY +L  ++E+R APF LWI DL

		Sbjct: 399 DDKQRISQEMMALYKAEKVNPLGGCFPLLIQMPIFLALYYMLMGSVELRQAPFALWIHDL 458

		

		Query: 464 STSDPTNIFTLFGLFNYNFPISIGILPIILGITMIIQQKIGEKGQTNKDDIQANVMKFFP 523

		           S  DP                   ILPI++G+TM   QK+     T  D +Q  +M F P

		Sbjct: 459 SAQDPYY-----------------ILPILMGVTMFFIQKM--SPTTVTDPMQQKIMTFMP 499

		

		Query: 524 YISIFIFSSFPAGLVIYWIFSNVITLIQQSLIKLFLTRK 562

		            I    F  FP+GLV+Y+I SN++T+IQQ LI   L ++

		Sbjct: 500 VIFTVFFLWFPSGLVLYYIVSNLVTIIQQQLIYRGLEKR 538

		

		

		>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD

		           chaperone signature.

		          Length = 168

		

		 Score = 33.7 bits (77), Expect = 3e-04

		 Identities = 25/129 (19%), Positives = 43/129 (33%), Gaps = 7/129 (5%)

		

		Query: 33  ELYEEAVELFDQKKYKQAIRAFRKIEDLYPFSYWAMKAKLLSGISHYNMDDYSSAASDMD 92

		           +LY  A   +   KY+ A + F+ +  L  +     +  L  G     M  Y  A     

		Sbjct: 38  QLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDS---RFFLGLGACRQAMGQYDLAI---H 91

		

		Query: 93  DYIYIYPNGEDLPYVYYLRVLSYYMQINRVQLGQQTAYKALELAAEYVNLFSESEYIEEM 152

		            Y Y        P   +       +Q   +   +   + A EL A+       S  +  M

		Sbjct: 92  SYSYGAIMDIKEPRFPFHAAEC-LLQKGELAEAESGLFLAQELIADKTEFKELSTRVSSM 150

		

		Query: 153 KEKVRLITD 161

		            E ++L  +

		Sbjct: 151 LEAIKLKKE 159

		

		

		>FbpA_PF05833#Fibronectin-binding protein

		          Length = 577

		

		 Score = 29.1 bits (65), Expect = 0.029

		 Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 1/31 (3%)

		

		Query: 56  EKAEKK-KKLEQELLTLKKRELYRQYVSLAT 85

		            +  KK K L   L   + +++++ Y  L T

		Sbjct: 313 NRCTKKDKILNNTLKKCEDKDIFKLYGELLT 343

		

		

		>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase

		           signature.

		          Length = 572

		

		 Score = 30.1 bits (68), Expect = 0.009

		 Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 10/63 (15%)

		

		Query: 177 ILSLFRSKNIPVLMVTHDPQEALKVADFIYVMKNGRIIQSGISSDIYHRPKDDTLAKFFS 236

		           I+S  RS  IP ++ T +  E ++  D + V         GI   +   P ++ +  +  

		Sbjct: 193 IMS--RSLEIPAVVGTKEVTEKIQHGDMVIV--------DGIEGIVIVNPTEEEVKAYEE 242

		

		Query: 237 ELS 239

		           + +

		Sbjct: 243 KRA 245

		

		

		>TATBPROTEIN#Bacterial sec-independent translocation TatB protein

		          signature.

		          Length = 171

		

		 Score = 31.1 bits (70), Expect = 9e-05

		 Identities = 14/42 (33%), Positives = 21/42 (50%)

		

		Query: 3  LGPWQLFLVLIIILVLFGAGRLPQVMGDLGKGIKNLKQELKD 44

		          +G  +L LV II LV+ G  RLP  +  +   I+ L+     

		Sbjct: 4  IGFSELLLVFIIGLVVLGPQRLPVAVKTVAGWIRALRSLATT 45