>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 48.1 bits (114), Expect = 1e-07 Identities = 47/364 (12%), Positives = 108/364 (29%), Gaps = 19/364 (5%) Query: 7 ERKMRYSIRKFSVGVASVAVASLFMGSVAHASELVKDDSVKTTEVAAKPYPSMAQTDQGN 66 YS+RK G ASVAVA +G+ + ++ + Sbjct: 5 NTNRHYSLRKLKTGTASVAVALTVLGAGLVVNTNEVSAVATRSQT--------------D 50 Query: 67 NSSSSELETTKMEIPTTDIKKAVEPVEKTAGETSATDTGKREKQLQQWKNNLKNDVDNTI 126 + K EI +K + + E+ + KND + Sbjct: 51 TLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSE 110 Query: 127 LSHEQKNEFKTKIDETNDSDALLELENQFNETNRLLHIKQHEEVEKDKKAKQQKTLKQSD 186 + + + K D + + + + L ++ + ++ + Sbjct: 111 KASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNF 170 Query: 187 TKVDLSNIDKELNHQKSQVEKMAEQKGITNEDKDSMLKKIEDIRKQAQQADKKEDAEVKV 246 + S K L +K+ +E + E + K + A Sbjct: 171 ST-ADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKAD 229 Query: 247 REELGKLFSSTKAGLDQEIQEHVKKETSSEENTQKVDEHYANSLQNLAQKSLEELDKATT 306 E+ + + +I+ ++ + E ++++ N + ++ Sbjct: 230 LEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKA-LEGAMNFSTADSAKIKTLEA 288 Query: 307 NEQATQVKNQFL--ENAQKLKEIQPLIKETNVKL-YKAMSESLEQVEKELKHNSEANLED 363 + A + + L ++ Q L ++ + K E+ Q +E SEA+ + Sbjct: 289 EKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQS 348 Query: 364 LVAK 367 L Sbjct: 349 LRRD 352
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 80.6 bits (199), Expect = 2e-19 Identities = 58/296 (19%), Positives = 129/296 (43%), Gaps = 16/296 (5%) Query: 21 KALLEGKDLSKMLGELG--FSDTVITQVALADLHGNISRSLLKIESYLANLLLVRKKVIE 78 ++EG L+ + F VA + G++ L ++ Y +R ++ + Sbjct: 112 SKVMEGHSLADAMKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQ 171 Query: 79 VATYPLILLSFLVLIMIGLRNYLMPQLGEN--------NFATRLITNVPNIF-----LLL 125 YP +L + ++ L + ++P++ E +TR++ + + +L Sbjct: 172 AMIYPCVLTVVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWML 231 Query: 126 LAVVLIFSLIFYIIQKRLSRIKVACFLTTIPLVGSYVKLYLTAYYAREWGNLLSQGIELD 185 LA++ F ++++ R+ L +PL+G + TA YAR L + + L Sbjct: 232 LALLAGFMAFRVMLRQEKRRVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLL 291 Query: 186 QIVKVMQNQKSKLF-REIGYDMEEGFLSGKAFHQKVLDYPFFLTELSLMIEYGQVKAKLG 244 Q +++ + S + R + G + H+ + F + MI G+ +L Sbjct: 292 QAMRISGDVMSNDYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMIASGERSGELD 351 Query: 245 TELDIYADEKWEDFFTKLARATQLIQPVIFIFVALIIVMIYAAMLLPMYQNMEILS 300 + L+ AD + +F +++ A L +P++ + +A +++ I A+L P+ Q ++S Sbjct: 352 SMLERAADNQDREFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPILQLNTLMS 407
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 46.4 bits (110), Expect = 1e-09 Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 1/64 (1%) Query: 9 KDKKVKAFTLLEMLVVLIIISVLLLLFVPNLSKQKESVTRTGNAAVVKVVESQAELFELQ 68 K + FTLLE++VV++II VL L VPNL KE + + + +E+ ++++L Sbjct: 3 ATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKL- 61 Query: 69 ETGR 72 + Sbjct: 62 DNHH 65
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 51.2 bits (122), Expect = 2e-10 Identities = 14/64 (21%), Positives = 30/64 (46%) Query: 5 RQIQKTKVAIYNAFISLLQENDYSKITVQDVIGLANVGRSTFYSHYESKEVLLKELCEDL 64 ++ Q+T+ I + + L + S ++ ++ A V R Y H++ K L E+ E Sbjct: 7 QEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELS 66 Query: 65 FHHL 68 ++ Sbjct: 67 ESNI 70
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 85.5 bits (211), Expect = 3e-19 Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 11/71 (15%) Query: 961 TPKPVPDKDKYDPTGKAQQVNGKGN-----------KLPATGENATPFFNVAALTIISSV 1009 TP P G+A Q K N +LP+TGE A PFF AALT++++ Sbjct: 468 TPDAKPGNKAVPGKGQAPQAGTKPNQNKAPMKETKRQLPSTGETANPFFTAAALTVMATA 527 Query: 1010 GLLSVSKKKED 1020 G+ +V K+KE+ Sbjct: 528 GVAAVVKRKEE 538 Score = 55.1 bits (132), Expect = 1e-09 Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 9/68 (13%) Query: 1 MFRRSKNNSYDTSQTKQRFSIKKFKFGAASVLIGLSFLGGVTQGNLNIFEESIVAASTIP 60 M + T + +S++K K G ASV + L+ LG N N + T Sbjct: 1 MTKN---------NTNRHYSLRKLKTGTASVAVALTVLGAGLVVNTNEVSAVATRSQTDT 51 Query: 61 GSAATLNT 68 Sbjct: 52 LEKVQERA 59
>FLGFLGJ#Flagellar protein FlgJ signature. Length = 313 Score = 32.8 bits (74), Expect = 0.009 Identities = 34/143 (23%), Positives = 56/143 (39%), Gaps = 11/143 (7%) Query: 299 IITQLYLESFWGDSTV----GRRDNNWSGMTGGAQTRPSGVKVTT---GMARPANEGGTY 351 I+ Q LES WG + G N G+ + ++TT + Sbjct: 174 ILAQAALESGWGQRQIRRENGEPSYNLFGVKASGNWKGPVTEITTTEYENGEAKKVKAKF 233 Query: 352 MHYASVDDFLKDYTYLLAKQGIYNVVGKKNIAD-YTKGLFRAGGAKYDYAAAGYQSYTNL 410 Y+S + L DY LL + Y V A+ + L AG A + A + TN+ Sbjct: 234 RVYSSYLEALSDYVGLLTRNPRYAAVTTAASAEQGAQALQDAGYATDPHYA---RKLTNM 290 Query: 411 MTNIRNGINKVTGNILNTIDKLW 433 + +++ +KV+ ID L+ Sbjct: 291 IQQMKSISDKVSKTYSMNIDNLF 313
>ADHESNFAMILY#Adhesin family signature. Length = 309 Score = 220 bits (563), Expect = 2e-70 Identities = 79/313 (25%), Positives = 149/313 (47%), Gaps = 12/313 (3%) Query: 1 MRKKFLLLMSFVAMFA-AWQLVQVKQVWADSKLKVVTTFYPVYEFTKNVVGDKADVSMLI 59 M+K LL+ F++ K + KLKVV T + + TKN+ GDK D+ ++ Sbjct: 1 MKKLGTLLVLFLSAIILVACASGKKDTTSGQKLKVVATNSIIADITKNIAGDKIDLHSIV 60 Query: 60 KAGTEPHDFEPSTKNIAAIQDSNAFVYMDDNMETWVPKVA-KSVKSKKVTTIKGTGDMLL 118 G +PH++EP +++ +++ Y N+ET K V++ K T K + Sbjct: 61 PIGQDPHEYEPLPEDVKKTSEADLIFYNGINLETGGNAWFTKLVENAKKTENKDY--FAV 118 Query: 119 TKGVEEEGEEHEGHGHEGHHHELDPHVWLSPERAISVVENIRNKFVKAYPKDAASFNKNA 178 + GV+ EG +G DPH WL+ E I +NI + P + + KN Sbjct: 119 SDGVDVI--YLEGQNEKGKE---DPHAWLNLENGIIFAKNIAKQLSAKDPNNKEFYEKNL 173 Query: 179 DAYIAKLKELDKEYKNGLSN--AKQKSFVTQHAAFGYMALDYGLNQVPIAGLTPDAEPSS 236 Y KL +LDKE K+ + A++K VT AF Y + YG+ I + + E + Sbjct: 174 KEYTDKLDKLDKESKDKFNKIPAEKKLIVTSEGAFKYFSKAYGVPSAYIWEINTEEEGTP 233 Query: 237 KRLGELAKYIKKYNINYIYFEENASNKVAKTLADEVGVKTAVLSPLEGLSKKEMAAGEDY 296 +++ L + +++ + ++ E + ++ KT++ + + + ++++ G+ Y Sbjct: 234 EQIKTLVEKLRQTKVPSLFVESSVDDRPMKTVSQDTNIPIYAQIFTDSIAEQG-KEGDSY 292 Query: 297 FSVMRRNLKVLKK 309 +S+M+ NL + + Sbjct: 293 YSMMKYNLDKIAE 305
>PF05272#Virulence-associated E family protein Length = 892 Score = 32.0 bits (72), Expect = 0.002 Identities = 11/20 (55%), Positives = 14/20 (70%) Query: 36 IVGKSGTGKSTLLSLLAGLD 55 + G G GKSTL++ L GLD Sbjct: 601 LEGTGGIGKSTLINTLVGLD 620
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 75.3 bits (185), Expect = 5e-18 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 2/105 (1%) Query: 2 KILTVEDDKLIREGISEYLSEFGYTVIQAKDGREALSKFNSD-INLVILDIQIPFINGLE 60 IL +DD IR +++ LS GY V + + +LV+ D+ +P N + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 61 VLKEIRK-KSNLPILILTAFSDEEYKIDAFTNLVDGYVEKPFSLP 104 +L I+K + +LP+L+++A + I A Y+ KPF L Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLT 109
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 35.0 bits (80), Expect = 5e-04 Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 1/76 (1%) Query: 250 AKEQRKLIAKHEEEKRLAEKKAEEEKAAAETQKKLEEEQ-ARLAAEAQRKQEEEQARLAA 308 A+ + E + +EEKA ET+K E + + Q + E Q + Sbjct: 1086 AQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEP 1145 Query: 309 ETQKKQETLVQEQTSQ 324 + ++E SQ Sbjct: 1146 ARENDPTVNIKEPQSQ 1161 Score = 30.0 bits (67), Expect = 0.015 Identities = 15/90 (16%), Positives = 30/90 (33%), Gaps = 6/90 (6%) Query: 234 ATIDYLSGKAQNTVLSAKEQRKLIAKHEEEKRLAEKKAEEEKAAAETQKKLEEEQARLAA 293 + + + T + ++ + K E+ K EK E K ++ K E+ + Sbjct: 1083 NEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQ------S 1136 Query: 294 EAQRKQEEEQARLAAETQKKQETLVQEQTS 323 E + Q E K+ T+ Sbjct: 1137 ETVQPQAEPARENDPTVNIKEPQSQTNTTA 1166 Score = 30.0 bits (67), Expect = 0.019 Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 8/104 (7%) Query: 224 TVTLENTSPNATIDYLSGKAQNTVLSAKEQRKLIAKHEEEKRLAEKKAEEEKAAAETQKK 283 TV + + T++ A T +E K + + + A+ ETQ Sbjct: 1039 TVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTT 1098 Query: 284 L------EEEQARLAAEAQRKQEEEQARLAAETQKKQETLVQEQ 321 E++ + E ++ QE ++ ++ KQE Q Sbjct: 1099 ETKETATVEKEEKAKVETEKTQEV--PKVTSQVSPKQEQSETVQ 1140 Score = 28.9 bits (64), Expect = 0.042 Identities = 20/107 (18%), Positives = 42/107 (39%), Gaps = 15/107 (14%) Query: 240 SGKAQNTVLSAKEQRKLIAKHE----EEKRLAEKKAEEEKA----------AAETQKKLE 285 S + ++K++ K + K+E E + A+E K+ A++ + + Sbjct: 1034 SETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETK 1093 Query: 286 EEQARLAAEAQRKQEEEQAR-LAAETQKKQETLVQEQTSQGYKRDYR 331 E Q E ++EE+A+ +TQ+ + Q Q + Sbjct: 1094 ETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQ 1140
>MICOLLPTASE#Microbial collagenase metalloprotease (M9) signature. Length = 1104 Score = 30.1 bits (67), Expect = 0.020 Identities = 16/97 (16%), Positives = 32/97 (32%), Gaps = 5/97 (5%) Query: 203 TIMVANVGNKDNKVKMVSFMRDLLVNIPNYSTEGYYDMKLNASFNLGEQDNHKGAEYVRQ 262 ++ N + + + L N G K NA FNL + ++ + Sbjct: 220 GRLIGNASAD--PEVINNCIYVLSDFKDNIDKYGSNYSKGNAVFNLMKGIDYYTNSVIYN 277 Query: 263 TLKNHFDIDIKYYVMVDFETFADAIDTLFPNGVKINA 299 T Y + + + +++L G K+N Sbjct: 278 TKGYDAKNTEFYNRIDP---YMERLESLCTIGDKLNN 311
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 50.8 bits (121), Expect = 2e-10 Identities = 14/55 (25%), Positives = 23/55 (41%) Query: 2 ESSDNTNLKFLKAFSELLETKSFEQITVSDLAKKAQLSRRAFYNHFNSKEDFLRE 56 + + T L L + ++ ++AK A ++R A Y HF K D E Sbjct: 7 QEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 41.6 bits (97), Expect = 3e-05 Identities = 34/133 (25%), Positives = 52/133 (39%), Gaps = 25/133 (18%) Query: 1643 KPEVPGKPEVPGKPEVPGKPEVPGKPEVPGKPEVPGKPEVPGKPEVPGKSEVPGKPEVPG 1702 K E+ K E K K ++ + E K GK P+ PG VPG Sbjct: 430 KAELQAKLEAEAKAL---KEKLAKQAEELAKLRA-GKASDSQTPDAK-----PGNKAVPG 480 Query: 1703 KPEVPGKPEVPGKPEVSGESTLIPLKVNYTSGERLENQELPSTGESNNPLILLGALGLLT 1762 K + P+ KP + + + ++LPSTGE+ NP AL ++ Sbjct: 481 KGQ---APQAGTKPNQN------------KAPMKETKRQLPSTGETANPFFTAAALTVMA 525 Query: 1763 GAYMM-NSKKKED 1774 A + K+KE+ Sbjct: 526 TAGVAAVVKRKEE 538 Score = 38.9 bits (90), Expect = 2e-04 Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 3/48 (6%) Query: 15 TKQRFSIKRFKFGAASVLVGLTFLGM---SSHSVLADESSIMSTEVPQ 59 T + +S+++ K G ASV V LT LG + + ++ ++ T+ + Sbjct: 6 TNRHYSLRKLKTGTASVAVALTVLGAGLVVNTNEVSAVATRSQTDTLE 53
>ENTEROTOXINA#Heat-labile enterotoxin A chain signature. Length = 258 Score = 30.0 bits (67), Expect = 0.018 Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 3/47 (6%) Query: 149 PYMKRVVGLTGTPSSNGLMDLFAEFKVIDGGERLGRFIGEYRGRYFR 195 PY + V L G P S F VID R EYR RY+R Sbjct: 126 PYEQEVSALGGIPYSQIYGWYRVNFGVIDERLHRNR---EYRDRYYR 169
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 29.3 bits (65), Expect = 0.006 Identities = 24/118 (20%), Positives = 46/118 (38%), Gaps = 16/118 (13%) Query: 33 FHDLFNMLSAESIMAQL---EQLEEGEELKASQIDLSILSDFDMTFFHRLFWVFAKSANP 89 F +L LS +S + L ++ +E EL ID++ + + F H F+ + + Sbjct: 192 FLNLIKSLSDDSDSSDLLFSQKFKEKLELNNKSIDINFIKENLTEFQH----AFSLAFSY 247 Query: 90 RIKP---------FEDFFMSMEEFPLQEVGPVLMSMLNQGMTTRKKQKLPKQRARKSS 138 P D F M + + S+ +G+ + L ++A K+S Sbjct: 248 YFAPDHRTVLELYAPDMFEYMNKLEKGGFEKISESLKKEGVEKDRIDVLKGEKALKAS 305
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 53.5 bits (128), Expect = 3e-09 Identities = 42/244 (17%), Positives = 95/244 (38%), Gaps = 10/244 (4%) Query: 16 TQPLQTALKGVNKQASEATKELRQIDKALKFDTGNVTLLTQKQEVLAKQVETTKEKLATL 75 + L+ + + +E K L + K + L + + A L Sbjct: 178 IKTLEAEKAALEARQAELEKALEGAMNFST-------ADSAKIKTLEAEKAALAARKADL 230 Query: 76 RQAQAQVEAQFKAGNIGADQYRAFQREVESTQTVLKGYESKLESVNRALSENGAQVETNQ 135 +A A + + + + E + + E LE + + A+++T + Sbjct: 231 EKALEGAMNFSTAD---SAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLE 287 Query: 136 SKLNRLQNEQAQLVSESEKLQSSFKLQESALATTASEADKLALAQQKVASHSEILEKQIH 195 ++ L+ E+A L +S+ L ++ + L + +L QK+ ++I E Sbjct: 288 AEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQ 347 Query: 196 NLEQQLSLTKSEYGENSVEANKLEKTLNETKTAYNNLQNEMEELASSSASSKASLEETNS 255 +L + L ++ + E KLE+ ++ + +L+ +++ + + +LEE NS Sbjct: 348 SLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQVEKALEEANS 407 Query: 256 LLKA 259 L A Sbjct: 408 KLAA 411 Score = 51.6 bits (123), Expect = 1e-08 Identities = 36/243 (14%), Positives = 90/243 (37%), Gaps = 3/243 (1%) Query: 17 QPLQTALKGVNKQASEATKELRQIDKALKFDTGNVTLLTQKQEVLAKQVETTKEKLATLR 76 +K + + + ++KAL+ T + K + L + + + A L Sbjct: 137 TADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELE 196 Query: 77 QAQAQVEAQFKAGNIGADQYRAFQREVESTQTVLKGYESKLESVNRALSENGAQVETNQS 136 +A A + + + + E + E LE + + A+++T ++ Sbjct: 197 KALEGAMNFSTAD---SAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEA 253 Query: 137 KLNRLQNEQAQLVSESEKLQSSFKLQESALATTASEADKLALAQQKVASHSEILEKQIHN 196 + L+ QA+L E + + + T +E L + + S++L + Sbjct: 254 EKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQS 313 Query: 197 LEQQLSLTKSEYGENSVEANKLEKTLNETKTAYNNLQNEMEELASSSASSKASLEETNSL 256 L + L ++ + E KLE+ ++ + +L+ +++ + +A ++ Sbjct: 314 LRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQ 373 Query: 257 LKA 259 K Sbjct: 374 NKI 376
>FLGFLGJ#Flagellar protein FlgJ signature. Length = 313 Score = 97.1 bits (241), Expect = 4e-25 Identities = 54/146 (36%), Positives = 83/146 (56%), Gaps = 8/146 (5%) Query: 2 TFLSKIK-DGCLASWEHGILPSVSAAQAILESGWGESLLAQY---PNHNLFGIKASSDWK 57 FL+++ LAS + G+ + AQA LESGWG+ + + P++NLFG+KAS +WK Sbjct: 151 AFLAQLSLPAQLASQQSGVPHHLILAQAALESGWGQRQIRRENGEPSYNLFGVKASGNWK 210 Query: 58 GKRVDLPTQEYIDGKFVTVEATFRKYDSWEESIKDHALFFSETAWRRSHYQNVLGEEDYK 117 G ++ T EY +G+ V+A FR Y S+ E++ D+ + R Y V + Sbjct: 211 GPVTEITTTEYENGEAKKVKAKFRVYSSYLEALSDYVGLLT----RNPRYAAVTTAASAE 266 Query: 118 KTCLALQASGYATDPNYGSKLITLIE 143 + ALQ +GYATDP+Y KL +I+ Sbjct: 267 QGAQALQDAGYATDPHYARKLTNMIQ 292
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 31.2 bits (70), Expect = 2e-04 Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 3/55 (5%) Query: 12 DITIADVSQSIQEFEIERDALQEFFDDMLKTYTTYQEMKDYIKSREANTPKQETE 66 D + + ++ +E +++D L+ F +LKTY ++DY+K RE +T TE Sbjct: 474 DTMLVALDKAEREGGVDKDQLKSFNSLILKTYRV---IEDYVKGREGDTKNSSTE 525
>ARGDEIMINASE#Bacterial arginine deiminase signature. Length = 409 Score = 27.1 bits (60), Expect = 0.040 Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 9/68 (13%) Query: 48 NDIDTAEQARQQAEAFATKREE------ELSNAKTEANQIIDNAKETGLAKGDQIISEAK 101 +DI E ARQ+ E FA+ + + + +E + + Q I EA+ Sbjct: 43 DDIPYLEVARQEHEVFASILKNNLVEIEYIEDLISEVLVSSVALENKFI---SQFILEAE 99 Query: 102 TEADRLKE 109 + D Sbjct: 100 IKTDFTIN 107
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 29.5 bits (66), Expect = 0.024 Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 3/37 (8%) Query: 137 IGFDTAVATAVENLDRLRDTSASHNRTFVVEVMGRNA 173 I D V E+ D L + ++E+MGR++ Sbjct: 94 INQDRIVVIDFESTDELGFN---SIYSLIIEIMGRHS 127
>PF05272#Virulence-associated E family protein Length = 892 Score = 35.0 bits (80), Expect = 2e-04 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%) Query: 29 ILSLVGPSGGGKTTLLRMLAGLE-KIDSGTIVHDGKEVSVDHL 70 + L G G GK+TL+ L GL+ D+ + GK+ S + + Sbjct: 598 SVVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTGKD-SYEQI 639
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 64.1 bits (156), Expect = 5e-14 Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 9/140 (6%) Query: 2 KVLVVDDEPVARNELIYLLNKYDSNLVIAEAHDMATALAILLRETFDVALLDIHLRDDSG 61 +LV DD+ R L L++ ++ I + AT + D+ + D+ + D++ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITS--NAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 62 LQLAEYINKM-PKPPLLIFATAYDQY--AIQAFEHDARDYLLKPYEFDRLKQAMDRVKGA 118 L I K P P+L+ +A + + AI+A E A DYL KP FD L + + + A Sbjct: 63 FDLLPRIKKARPDLPVLVM-SAQNTFMTAIKASEKGAYDYLPKP--FD-LTELIGIIGRA 118 Query: 119 LSTSTIIESVTSGPLFKQQY 138 L+ S Sbjct: 119 LAEPKRRPSKLEDDSQDGMP 138
>PF06580#Sensor histidine kinase Length = 349 Score = 203 bits (517), Expect = 3e-62 Identities = 59/211 (27%), Positives = 110/211 (52%), Gaps = 12/211 (5%) Query: 366 QAEEATRLLQDAEMKSLQAQVNPHFLFNALNTIYGLIRMDSEKARKLVQDFSKVIRANLQ 425 + + Q+A++ +L+AQ+NPHF+FNALN I LI D KAR+++ S+++R +L+ Sbjct: 150 DQWKMASMAQEAQLMALKAQINPHFMFNALNNIRALILEDPTKAREMLTSLSELMRYSLR 209 Query: 426 RAKQNLIPLHDELEQVNAYLALEEARFPNMVAFNLDNQTNSDDNLMIPPFTLQVLIENSY 485 + + L DEL V++YL L +F + + F ++ +PP +Q L+EN Sbjct: 210 YSNARQVSLADELTVVDSYLQLASIQFEDRLQFENQINPAI-MDVQVPPMLVQTLVENGI 268 Query: 486 KHAFKHINKNNQLKVTIARNNDRLHIIVQDNGIGIPKEKLITLGKKTQISKKGSGTAIEN 545 KH + + ++ + ++N + + V++ G K +K+ +GT ++N Sbjct: 269 KHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKN-----------TKESTGTGLQN 317 Query: 546 LVRRLNIIYDGQASLKFESNDLGTCAIVNIP 576 + RL ++Y +A +K A+V IP Sbjct: 318 VRERLQMLYGTEAQIKLSEKQGKVNAMVLIP 348
>MYCMG045#Hypothetical mycoplasma lipoprotein (MG045) signature. Length = 483 Score = 29.3 bits (65), Expect = 0.007 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 3/58 (5%) Query: 27 KNNDIHFDTKRLESD---SQKNSGFQTELTKDLFKKEDLKKLDENRQSKVSLQKKQSK 81 K N+ +K++ +D S+K + TE K L +KED +L+EN + V KK Sbjct: 389 KKNNAEMKSKQMSTDQMTSEKEFDYYTETLKALLEKEDSAELNENEKKLVETIKKAYT 446
>PF06580#Sensor histidine kinase Length = 349 Score = 27.9 bits (62), Expect = 0.030 Identities = 16/88 (18%), Positives = 37/88 (42%), Gaps = 9/88 (10%) Query: 40 TIASTFNVSPETARKGLNILADLQILTLKHGSGAII-LSKEKAIEFLNQYETSHSVAILK 98 I + P AR+ L L++L +L++ + + L+ E + ++ Y + + Sbjct: 181 NIRALILEDPTKAREMLTSLSELMRYSLRYSNARQVSLADE--LTVVDSY-----LQLAS 233 Query: 99 GKIRDNIKAQQQEMEELA-TLVDDFLLQ 125 + D ++ + Q + V L+Q Sbjct: 234 IQFEDRLQFENQINPAIMDVQVPPMLVQ 261
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 34.3 bits (78), Expect = 0.002 Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 2/87 (2%) Query: 226 IPKKDLSPSELAAAQAYWSQKQGRGARPSDY-RPTPAPGRRKAPIPDVTPNPGQGHQPD- 283 IP+ DL+P A A + P++ P PG R P PD NP D Sbjct: 310 IPRPDLTPGSAEAPNAQPLPEVSPAENPANNPAPNENPGTRPNPEPDPDLNPDANPDTDG 369 Query: 284 NGGYHPAPPRPNDASQNKHQRDEFKGK 310 G P P D +H+++ +G+ Sbjct: 370 QPGTRPDSPAVPDRPNGRHRKERKEGE 396
>ADHESNFAMILY#Adhesin family signature. Length = 309 Score = 247 bits (631), Expect = 5e-83 Identities = 82/323 (25%), Positives = 143/323 (44%), Gaps = 34/323 (10%) Query: 1 MKKGFFLMAMVVSLVMIAGCDKSANPKQPTQGMSVVTSFYPMYAMTKEVSGDLNDVR-MI 59 MKK L+ + +S +++ C Q + VV + + +TK ++GD D+ ++ Sbjct: 1 MKKLGTLLVLFLSAIILVACASGKKDTTSGQKLKVVATNSIIADITKNIAGDKIDLHSIV 60 Query: 60 QSGAGIHSFEPSVNDVAAIYDADLFVYHSHTLE----AWARDLDPNLKKSKVDVFEASKP 115 G H +EP DV +ADL Y+ LE AW L N KK++ + A Sbjct: 61 PIGQDPHEYEPLPEDVKKTSEADLIFYNGINLETGGNAWFTKLVENAKKTENKDYFA--- 117 Query: 116 LTLDRVKGLEDMEVTQGIDPATLY--------DPHTWTDPVLAGEEAVNIAKELGRLDPK 167 V+ G+D L DPH W + A NIAK+L DP Sbjct: 118 -------------VSDGVDVIYLEGQNEKGKEDPHAWLNLENGIIFAKNIAKQLSAKDPN 164 Query: 168 HKDSYTKKAKAFKKEAEQLTEEYTQKFKKVR--SKTFVTQHTAFSYLAKRFGLKQLGISG 225 +K+ Y K K + + ++L +E KF K+ K VT AF Y +K +G+ I Sbjct: 165 NKEFYEKNLKEYTDKLDKLDKESKDKFNKIPAEKKLIVTSEGAFKYFSKAYGVPSAYIWE 224 Query: 226 ISPEQEPSPRQLKEIQDFVKEYNVKTIFAEDNVNPKIAHAIAKSTGAKVKT---LSPLEA 282 I+ E+E +P Q+K + + +++ V ++F E +V+ + +++ T + + Sbjct: 225 INTEEEGTPEQIKTLVEKLRQTKVPSLFVESSVDDRPMKTVSQDTNIPIYAQIFTDSIAE 284 Query: 283 APSGNKTYLENLRANLEVLYQQL 305 +Y ++ NL+ + + L Sbjct: 285 QGKEGDSYYSMMKYNLDKIAEGL 307
>SUBTILISIN#Subtilisin serine protease family (S8) signature. Length = 326 Score = 107 bits (269), Expect = 2e-27 Identities = 51/226 (22%), Positives = 85/226 (37%), Gaps = 47/226 (20%) Query: 117 KAGKGAGTVVAVIDAGFDKNHEAWRLTDKAKARYQSKEDLEKAKKEHGITYGEWVNDKVA 176 +G G VAV+D G D +H DL KA+ G + + Sbjct: 36 NQTRGRGVKVAVLDTGCDADHP----------------DL-KARIIGGRNFTDDDEGDPE 78 Query: 177 YYHDYSKDGKTAVDQEHGTHVSGILSGNAPSETKEPYRLEGAMPEAQLLLMRVEIVNGLA 236 + DY+ HGTHV+G ++ + G PEA LL+++V G Sbjct: 79 IFKDYNG---------HGTHVAGTIAATENE-----NGVVGVAPEADLLIIKVLNKQGSG 124 Query: 237 DYARNYAQAIRDAINLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGND 296 Y Q I AI +I+MS G E +A A + + ++ +AGN+ Sbjct: 125 QYD-WIIQGIYYAIEQKVDIISMSLGGPED-----VPELHEAVKKAVASQILVMCAAGNE 178 Query: 297 SSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETAT 342 +T +G P + ++V + + D+ +E + Sbjct: 179 GDGDDRT----------DELGYPGCYNEVISVGAINFDRHASEFSN 214 Score = 79.9 bits (197), Expect = 5e-18 Identities = 37/139 (26%), Positives = 58/139 (41%), Gaps = 22/139 (15%) Query: 457 NATPKVLPTASGTK---LSRFSSWGLTADGNIKPDIAAPGQDILSSVANNKYAKLSGTSM 513 +V+ + S FS+ + D+ APG+DILS+V KYA SGTSM Sbjct: 192 GCYNEVISVGAINFDRHASEFSNSNN------EVDLVAPGEDILSTVPGGKYATFSGTSM 245 Query: 514 SAPLVAGIMGL-LQKQYETQYPDMTPSERLDLAKKVLMSSATALYDEDEKAYFSPRQQGA 572 + P VAG + L Q + D+T E L+ L + SP+ +G Sbjct: 246 ATPHVAGALALIKQLANASFERDLTEPE----LYAQLIKRTIPLGN-------SPKMEGN 294 Query: 573 GAVDAKKASA-ATMYVTDK 590 G + + ++ T + Sbjct: 295 GLLYLTAVEELSRIFDTQR 313
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 43.3 bits (102), Expect = 3e-06 Identities = 51/253 (20%), Positives = 90/253 (35%), Gaps = 31/253 (12%) Query: 419 VIGQNDAVEAVARAIRRNRAGFDDGNRPIGSFLFVGPTGVGKTELAKQLAFDMFGSKDAI 478 ++G++ A++ + R + R + + + G +G GK +A+ L Sbjct: 139 LVGRSAAMQEIYRVLAR----LMQTDLTL---MITGESGTGKELVARALHDYGKRRNGPF 191 Query: 479 VRLDMSEYNDRTAVSKLIGATAGYVGYDDNSNTLTERIRRNPYSIVLLDEIEKADPQVIT 538 V ++M+ S+L G G + T R + + LDEI T Sbjct: 192 VAINMAAIPRDLIESELFGHEKG--AFTGAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQT 249 Query: 539 LLLQVLDDGRLTDGQGNTINFKNTVIIATSNAGFGNEAFTGDSDKDLKIMERISPYFRPE 598 LL+VL G T G T + I+A +N KDLK FR + Sbjct: 250 RLLRVLQQGEYTTVGGRTPIRSDVRIVAATN-------------KDLKQSIN-QGLFRED 295 Query: 599 FLNRFNGV-IEFSHLS--KDDLNEIVDLMLDEVNQTIGKKGIDLVVDENVKSHLIDLGYD 655 R N V + L +D+ ++V + + + G D+ + + Sbjct: 296 LYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEK-EGLDVKRF--DQEALELM--KAHP 350 Query: 656 EAMGVRPLRRVIE 668 VR L ++ Sbjct: 351 WPGNVRELENLVR 363
>SECA#SecA protein signature. Length = 901 Score = 728 bits (1880), Expect = 0.0 Identities = 301/846 (35%), Positives = 460/846 (54%), Gaps = 67/846 (7%) Query: 1 MTAFNSLF-SLDKKRLKKLQRTLNTINSLKDQMATLSNEELQAKTTEFRKRLVNGETLDD 59 + +F S + + L+++++ +N IN+++ +M LS+EEL+ KT EFR RL GE L++ Sbjct: 3 IKLLTKVFGSRNDRTLRRMRKVVNIINAMEPEMEKLSDEELKGKTAEFRARLEKGEVLEN 62 Query: 60 ICAEAFAVVREADKRVLGLFPYDVQVIGGLVLHQGNTAEMKTGEGKTLTATMPLYLNALE 119 + EAFAVVREA KRV G+ +DVQ++GG+VL++ AEM+TGEGKTLTAT+P YLNAL Sbjct: 63 LIPEAFAVVREASKRVFGMRHFDVQLLGGMVLNERCIAEMRTGEGKTLTATLPAYLNALT 122 Query: 120 GKGAMLLTNNSYLAIRDAEEMGKVYRFLGLSVGVGVSDNEEEDRDAATKRAVYSSDIVYS 179 GKG ++T N YLA RDAE ++ FLGL+VG+ + + R Y++DI Y Sbjct: 123 GKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAK-----REAYAADITYG 177 Query: 180 TSSALGFDYLIDNLASSKSQKYMPKLHYAIVDEADAVLLDMAQTPLVISGSPRVQSNLYK 239 T++ GFDYL DN+A S ++ KLHYA+VDE D++L+D A+TPL+ISG S +YK Sbjct: 178 TNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYK 237 Query: 240 IADELI-----------LSFEEQVDYYFDKEHQEVWIKNQGVREAERYFRIP-------H 281 +++I +F+ + + D++ ++V + +G+ E Sbjct: 238 RVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGES 297 Query: 282 FYKQSNRELVRHLNLSLKAHKLFERGKDYVVDDGEIKLLDATNGRVLEGTKLQGGVHQAI 341 Y +N L+ H+ +L+AH LF R DY+V DGE+ ++D GR ++G + G+HQA+ Sbjct: 298 LYSPANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAV 357 Query: 342 EQKEHLNVTPESRAMASITYQNLFRMFTKLAGMTGTGKTAEKEFIEVYDMEVVRIPTNSP 401 E KE + + E++ +ASIT+QN FR++ KLAGMTGT T EF +Y ++ V +PTN P Sbjct: 358 EAKEGVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRP 417 Query: 402 VRRIDYPDKIYTTLPEKIYATIEFVKQVHDTGQPILLVAGSVRMSELFSELLLLSGIPHS 461 + R D PD +Y T EKI A IE +K+ GQP+L+ S+ SEL S L +GI H+ Sbjct: 418 MIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHN 477 Query: 462 LLNAQSAVKEAQMIAEAGQKGAVTVATNMAGRGTDIKLG--------------------- 500 +LNA+ EA ++A+AG AVT+ATNMAGRGTDI LG Sbjct: 478 VLNAKFHANEAAIVAQAGYPAAVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKI 537 Query: 501 --------KGVSELGGLAVIGTERMKSQRMDLQLRGRSGRQGDIGFSQFFVSFEDDLM-I 551 V E GGL +IGTER +S+R+D QLRGRSGRQGD G S+F++S ED LM I Sbjct: 538 KADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDALMRI 597 Query: 552 ESGPKWAQAYFRKNRDKVNPEKPKALGQRRFQKLFQQTQEASDGKGESARSQTIEFDSSV 611 + + K+ + +A+ K Q + + R Q +E+D Sbjct: 598 FASDR-----VSGMMRKLGMKPGEAIEHPWVTKAIANAQRKVESRNFDIRKQLLEYDDVA 652 Query: 612 QLQREYVYRERNALINGESGHFSPRQIIDTVISSFIAYLDGEVEKEELIFEINRFIFDNM 671 QR +Y +RN L++ + I + V + I EE+ Sbjct: 653 NDQRRAIYSQRNELLDVSDVSETINSIREDVFKATIDAYIPPQSLEEMWDIPGLQERLKN 712 Query: 672 SYNLQGISKE-------MSLEEIKNYLFKIADEILREKHNLLG-DSFGDFERTAALKAID 723 ++L E + E ++ + + E+ + K ++G + FE+ L+ +D Sbjct: 713 DFDLDLPIAEWLDKEPELHEETLRERILAQSIEVYQRKEEVVGAEMMRHFEKGVMLQTLD 772 Query: 724 EAWIEEVDYLQQLRTVATARQTAQRNPVFEYHKEAYKSYNIMKKEIREQTFRNLLLSEVS 783 W E + + LR R AQ++P EY +E++ + M + ++ + L +V Sbjct: 773 SLWKEHLAAMDYLRQGIHLRGYAQKDPKQEYKRESFSMFAAMLESLKYEVISTLSKVQVR 832 Query: 784 FNENGD 789 E + Sbjct: 833 MPEEVE 838
>SECYTRNLCASE#Preprotein translocase SecY subunit signature. Length = 437 Score = 140 bits (355), Expect = 1e-39 Identities = 85/393 (21%), Positives = 173/393 (44%), Gaps = 40/393 (10%) Query: 6 IFEKNIILRKILITFSLIIIFLLGRYVPIPGVLISAYKG------QDNNFATLYSTVTGG 59 F + +K+L T ++I+++ +G ++PIPGV + + L + +GG Sbjct: 8 AFRTPDLRKKLLFTLAIIVVYRVGTHIPIPGVDYKNVQQCVREASGNQGLFGLVNMFSGG 67 Query: 60 NLSQVGVFSLGIGPMMTTMILLRLFTIG--------KYSSGVSQKVQQFRQNVVMLVIAI 111 L Q+ +F+LGI P +T I+L+L T+ K + K+ Q+ + + +AI Sbjct: 68 ALLQITIFALGIMPYITASIILQLLTVVIPRLEALKKEGQAGTAKITQY-TRYLTVALAI 126 Query: 112 IQGLAIAISF-------------QYHNGFSLTKLLLATMILVTGAYIISWIGNLNAEYGF 158 +QG + + Q S+ + + + G ++ W+G L + G Sbjct: 127 LQGTGLVATARSAPLFGRCSVGGQIVPDQSIFTTITMVICMTAGTCVVMWLGELITDRGI 186 Query: 159 G-GMTILVVVGMLVGQFNNIPLIFEL-FQDGYQLAIILFLLWTLVAMYLMITFERSEYRI 216 G GM+IL+ + + + + I + G + + L+ + L++ E+++ RI Sbjct: 187 GNGMSILMFISIAATFPSALWAIKKQGTLAGGWIEFGTVIAVGLIMVALVVFVEQAQRRI 246 Query: 217 PVM--RTSIHNRLVDDA--YMPIKVNASGGMAFMYVYTLLMFPQYIIILLRSIFPTNPDI 272 PV + I R Y+P+KVN +G + ++ +LL P + N Sbjct: 247 PVQYAKRMIGRRSYGGTSTYIPLKVNQAGVIPVIFASSLLYIPALVA----QFAGGNSGW 302 Query: 273 TSY--NDYFSLSSIQGVVIYMILMLVLSVAFTFVNIDPTKISEAMRESGDFIPNYRPGKE 330 S+ + +V Y +L++ + + ++ +P ++++ M++ G FIP R G+ Sbjct: 303 KSWVEQNLTKGDHPIYIVTYFLLIVFFAFFYVAISFNPEEVADNMKKYGGFIPGIRAGRP 362 Query: 331 TQSYLSKICYLFGTFSGFFMAFLGGVPLLFALG 363 T YLS + ++ + VP + +G Sbjct: 363 TAEYLSYVLNRITWPGSLYLGLIALVPTMALVG 395
>ICENUCLEATIN#Ice nucleation protein signature. Length = 1258 Score = 58.6 bits (141), Expect = 1e-10 Identities = 136/583 (23%), Positives = 237/583 (40%), Gaps = 11/583 (1%) Query: 623 YGYTQVDGESDANAEKKFLSESASTSASTSASTSASASASTSASISASTSASISASTSAS 682 YG TQ GE ES+ + S T S T+ S T+ S+ + Sbjct: 212 YGSTQTAGE-----------ESSQMAGYGSTQTGMKGSDLTAGYGSTGTAGDDSSLIAGY 260 Query: 683 TSASTSASTSASMSTSTSVSTSASTSASMSASTSASTSASTSASTSASTSASTSASTSAS 742 S T+ S+ + S T+ S + S T+ + S+ + S T+ S Sbjct: 261 GSTQTAGEDSSLTAGYGSTQTAQKGSDLTAGYGSTGTAGADSSLIAGYGSTQTAGEESTQ 320 Query: 743 TSASMSASTSASTSASMSASTSASTSASTSASMSASTSASTSASTSASTSASISASTSAS 802 T+ S T+ S + S T+ S+ ++ S T+ S+ T+ S T+ Sbjct: 321 TAGYGSTQTAQKGSDLTAGYGSTGTAGDDSSLIAGYGSTQTAGEDSSLTAGYGSTQTAQK 380 Query: 803 MSASTSASTSASTSASMSASTSASTSASTSASTSASTSASTSASMSASMSASTSASMSAS 862 S T+ S T+ + S+ + S T+ S T+ S + S T+ S Sbjct: 381 GSDLTAGYGSTGTAGADSSLIAGYGSTQTAGEESTQTAGYGSTQTAQKGSDLTAGYGSTG 440 Query: 863 TSASTSASTSASTSASTSASTSASTSASTSTSTSASTSASMSASTSASTSASTSASMSAS 922 T+ S+ + S T+ S+ T+ ST T+ S + S ST+ S+ ++ Sbjct: 441 TAGDDSSLIAGYGSTQTAGEDSSLTAGYGSTQTAQKGSDLTAGYGSTSTAGYESSLIAGY 500 Query: 923 TSASISASTSASMSASTSASTSASTSASTSASMSASTSASTSASTSASTSASMSASTSAS 982 S + S + S T+ + S + S ST+ + S+ + S ++ S Sbjct: 501 GSTQTAGYGSTLTAGYGSTQTAQNESDLITGYGSTSTAGANSSLIAGYGSTQTASYNSVL 560 Query: 983 TSASTSASTSASMSASTSASTSASTSASTSASTSASTSASTSASTSSSTSASTSASTSAS 1042 T+ S T+ S T+ S T+ S S+ + S T++ SS T+ S T+ Sbjct: 561 TAGYGSTQTAREGSDLTAGYGSTGTAGSDSSIIAGYGSTQTASYHSSLTAGYGSTQTARE 620 Query: 1043 TSASMSASTSASTSASTSASMSASTSSSTSASMSASTSASTSASTSASTSASTSASMSAS 1102 S + S ST+ + S+ ++ S+ T+ S T+ S T+ S T+ S S Sbjct: 621 QSVLTTGYGSTSTAGADSSLIAGYGSTQTAGYNSILTAGYGSTQTAQEGSDLTAGYGSTS 680 Query: 1103 TSASTSASMSASTSASMSASTSASTSASTSASMSASTSASTSASMSASTSASKSASMSAS 1162 T+ + S+ ++ S + S T+ S + S TS S ST+ + S+ ++ Sbjct: 681 TAGADSSLIAGYGSTQTAGYNSILTAGYGSTQTAQEGSDLTSGYGSTSTAGADSSLIAGY 740 Query: 1163 TSASTSASMSASTSASMSATTSASTSVSTSASTSASTSASTSS 1205 S T++ S+ T+ S T+ SV T+ S ST+ + SS Sbjct: 741 GSTQTASYHSSLTAGYGSTQTAREQSVLTTGYGSTSTAGADSS 783 Score = 57.8 bits (139), Expect = 2e-10 Identities = 141/615 (22%), Positives = 249/615 (40%), Gaps = 1/615 (0%) Query: 623 YGYTQVDGESDANAEKKFLSESASTSASTSASTSASASASTSAS-ISASTSASISASTSA 681 YG TQ GE + +++A + +A ++ +A +S I+ S + S Sbjct: 356 YGSTQTAGEDSSLTAGYGSTQTAQKGSDLTAGYGSTGTAGADSSLIAGYGSTQTAGEEST 415 Query: 682 STSASTSASTSASMSTSTSVSTSASTSASMSASTSASTSASTSASTSASTSASTSASTSA 741 T+ S T+ S T+ S T+ S+ + S T+ S+ T+ S T+ Sbjct: 416 QTAGYGSTQTAQKGSDLTAGYGSTGTAGDDSSLIAGYGSTQTAGEDSSLTAGYGSTQTAQ 475 Query: 742 STSASMSASTSASTSASMSASTSASTSASTSASMSASTSASTSASTSASTSASISASTSA 801 S + S ST+ S+ + S T+ S T+ S T+ + S I+ S Sbjct: 476 KGSDLTAGYGSTSTAGYESSLIAGYGSTQTAGYGSTLTAGYGSTQTAQNESDLITGYGST 535 Query: 802 SMSASTSASTSASTSASMSASTSASTSASTSASTSASTSASTSASMSASMSASTSASMSA 861 S + + S+ + S ++ S T+ S T+ S T+ S + S S+ ++ Sbjct: 536 STAGANSSLIAGYGSTQTASYNSVLTAGYGSTQTAREGSDLTAGYGSTGTAGSDSSIIAG 595 Query: 862 STSASTSASTSASTSASTSASTSASTSASTSTSTSASTSASMSASTSASTSASTSASMSA 921 S T++ S+ T+ S T+ S T+ S ST+ + S+ + S T+ S Sbjct: 596 YGSTQTASYHSSLTAGYGSTQTAREQSVLTTGYGSTSTAGADSSLIAGYGSTQTAGYNSI 655 Query: 922 STSASISASTSASMSASTSASTSASTSASTSASMSASTSASTSASTSASTSASMSASTSA 981 T+ S T+ S T+ S ST+ + S+ ++ S T+ S T+ S T+ Sbjct: 656 LTAGYGSTQTAQEGSDLTAGYGSTSTAGADSSLIAGYGSTQTAGYNSILTAGYGSTQTAQ 715 Query: 982 STSASTSASTSASMSASTSASTSASTSASTSASTSASTSASTSASTSSSTSASTSASTSA 1041 S TS S S + + S+ + S T++ S+ T+ S T+ S T+ S Sbjct: 716 EGSDLTSGYGSTSTAGADSSLIAGYGSTQTASYHSSLTAGYGSTQTAREQSVLTTGYGST 775 Query: 1042 STSASMSASTSASTSASTSASMSASTSSSTSASMSASTSASTSASTSASTSASTSASMSA 1101 ST+ + S+ + S T+ S T+ S + S T+ S ST+ + S+ ++ Sbjct: 776 STAGADSSLIAGYGSTQTAGYHSILTAGYGSTQTAQERSDLTTGYGSTSTAGADSSLIAG 835 Query: 1102 STSASTSASMSASTSASMSASTSASTSASTSASMSASTSASTSASMSASTSASKSASMSA 1161 S T+ S T+ S T+ S T+ S ST+ S+ ++ S + S Sbjct: 836 YGSTQTAGYNSILTAGYGSTQTAQENSDLTTGYGSTSTAGYDSSLIAGYGSTQTAGYNSI 895 Query: 1162 STSASTSASMSASTSASMSATTSASTSVSTSASTSASTSASTSSSSSVTSNSSKEKVYSA 1221 T+ S + S + S ST+ S+ + S T+S S + Sbjct: 896 LTAGYGSTQTAQENSDLTTGYGSTSTAGYESSLIAGYGSTQTASFKSTLMAGYGSSQTAR 955 Query: 1222 LPSTGDQDYSVTATA 1236 S+ Y T+ A Sbjct: 956 EQSSLTAGYGSTSMA 970 Score = 57.8 bits (139), Expect = 3e-10 Identities = 134/588 (22%), Positives = 243/588 (41%), Gaps = 5/588 (0%) Query: 623 YGYTQVDGESDANAEKKFLSESASTSASTSASTSASASASTSASI-----SASTSASISA 677 YG TQ GE +++A + +A ++ +A +S+ S T+ S+ Sbjct: 404 YGSTQTAGEESTQTAGYGSTQTAQKGSDLTAGYGSTGTAGDDSSLIAGYGSTQTAGEDSS 463 Query: 678 STSASTSASTSASTSASMSTSTSVSTSASTSASMSASTSASTSASTSASTSASTSASTSA 737 T+ S T+ S + S ST+ S+ ++ S T+ S T+ S T+ Sbjct: 464 LTAGYGSTQTAQKGSDLTAGYGSTSTAGYESSLIAGYGSTQTAGYGSTLTAGYGSTQTAQ 523 Query: 738 STSASTSASMSASTSASTSASMSASTSASTSASTSASMSASTSASTSASTSASTSASISA 797 + S + S ST+ + S+ ++ S T++ S + S T+ S T+ S Sbjct: 524 NESDLITGYGSTSTAGANSSLIAGYGSTQTASYNSVLTAGYGSTQTAREGSDLTAGYGST 583 Query: 798 STSASMSASTSASTSASTSASMSASTSASTSASTSASTSASTSASTSASMSASMSASTSA 857 T+ S S+ + S T++ S+ T+ S T+ S T+ S S + + S+ + Sbjct: 584 GTAGSDSSIIAGYGSTQTASYHSSLTAGYGSTQTAREQSVLTTGYGSTSTAGADSSLIAG 643 Query: 858 SMSASTSASTSASTSASTSASTSASTSASTSASTSTSTSASTSASMSASTSASTSASTSA 917 S T+ S T+ S T+ S T+ STST+ + S+ ++ S T+ S Sbjct: 644 YGSTQTAGYNSILTAGYGSTQTAQEGSDLTAGYGSTSTAGADSSLIAGYGSTQTAGYNSI 703 Query: 918 SMSASTSASISASTSASMSASTSASTSASTSASTSASMSASTSASTSASTSASTSASMSA 977 + S + S S S ST+ + S+ + S T++ S+ T+ S + Sbjct: 704 LTAGYGSTQTAQEGSDLTSGYGSTSTAGADSSLIAGYGSTQTASYHSSLTAGYGSTQTAR 763 Query: 978 STSASTSASTSASTSASMSASTSASTSASTSASTSASTSASTSASTSASTSSSTSASTSA 1037 S T+ S ST+ + S+ + S T+ S T+ S T+ S T+ S Sbjct: 764 EQSVLTTGYGSTSTAGADSSLIAGYGSTQTAGYHSILTAGYGSTQTAQERSDLTTGYGST 823 Query: 1038 STSASTSASMSASTSASTSASTSASMSASTSSSTSASMSASTSASTSASTSASTSASTSA 1097 ST+ + S+ ++ S T+ S + S+ T+ S T+ S ST+ S+ + Sbjct: 824 STAGADSSLIAGYGSTQTAGYNSILTAGYGSTQTAQENSDLTTGYGSTSTAGYDSSLIAG 883 Query: 1098 SMSASTSASTSASMSASTSASMSASTSASTSASTSASMSASTSASTSASMSASTSASKSA 1157 S T+ S + S + S T+ S S + S+ + S T++ KS Sbjct: 884 YGSTQTAGYNSILTAGYGSTQTAQENSDLTTGYGSTSTAGYESSLIAGYGSTQTASFKST 943 Query: 1158 SMSASTSASTSASMSASTSASMSATTSASTSVSTSASTSASTSASTSS 1205 M+ S+ T+ S+ T+ S + + S + S T+ S+ Sbjct: 944 LMAGYGSSQTAREQSSLTAGYGSTSMAGYDSSLIAGYGSTQTAGYQST 991 Score = 57.8 bits (139), Expect = 3e-10 Identities = 120/589 (20%), Positives = 273/589 (46%), Gaps = 6/589 (1%) Query: 623 YGYTQVDGESDANAEKKFLSESASTSASTSASTSASASASTSASI-----SASTSASISA 677 YG TQ GE + +++A + +A ++++A +S+ S T+ S Sbjct: 452 YGSTQTAGEDSSLTAGYGSTQTAQKGSDLTAGYGSTSTAGYESSLIAGYGSTQTAGYGST 511 Query: 678 STSASTSASTSASTSASMSTSTSVSTSASTSASMSASTSASTSASTSASTSASTSASTSA 737 T+ S T+ + S ++ S ST+ + S+ ++ S T++ S T+ S T+ Sbjct: 512 LTAGYGSTQTAQNESDLITGYGSTSTAGANSSLIAGYGSTQTASYNSVLTAGYGSTQTAR 571 Query: 738 STSASTSASMSASTSASTSASMSASTSASTSASTSASMSASTSASTSASTSASTSASISA 797 S T+ S T+ S S+ ++ S T++ S+ + S T+ S T+ S Sbjct: 572 EGSDLTAGYGSTGTAGSDSSIIAGYGSTQTASYHSSLTAGYGSTQTAREQSVLTTGYGST 631 Query: 798 STSASMSASTSASTSASTSASMSASTSASTSASTSASTSASTSASTSASMSASMSASTSA 857 ST+ + S+ + S T+ S T+ S T+ S T+ S S + + S+ + Sbjct: 632 STAGADSSLIAGYGSTQTAGYNSILTAGYGSTQTAQEGSDLTAGYGSTSTAGADSSLIAG 691 Query: 858 SMSASTSASTSASTSASTSASTSASTSASTSASTSTSTSASTSASMSASTSASTSASTSA 917 S T+ S T+ S T+ S TS STST+ + S S+ A ++ +AS + Sbjct: 692 YGSTQTAGYNSILTAGYGSTQTAQEGSDLTSGYGSTSTAGADS-SLIAGYGSTQTASYHS 750 Query: 918 SMSASTSASISASTSASMSASTSASTSASTSASTSASMSASTSASTSASTSASTSASMSA 977 S++A ++ +A + ++ ++++A +S A ++ +A + +A ++ +A Sbjct: 751 SLTAGYGSTQTAREQSVLTTGYGSTSTAGADSSLIAGYGSTQTAGYHSILTAGYGSTQTA 810 Query: 978 STSASTSASTSASTSASMSASTSASTSASTSASTSASTSASTSASTSASTSSSTSASTSA 1037 + + ++++A +S A ++ +A ++ +A ++ +A +S + + Sbjct: 811 QERSDLTTGYGSTSTAGADSSLIAGYGSTQTAGYNSILTAGYGSTQTAQENSDLTTGYGS 870 Query: 1038 STSASTSASMSASTSASTSASTSASMSASTSSSTSASMSASTSASTSASTSASTSASTSA 1097 +++A +S+ A ++ +A ++ ++A S+ +A ++ + ++++A +S A Sbjct: 871 TSTAGYDSSLIAGYGSTQTAGYNSILTAGYGSTQTAQENSDLTTGYGSTSTAGYESSLIA 930 Query: 1098 SMSASTSASTSASMSASTSASMSASTSASTSASTSASMSASTSASTSASMSASTSASKSA 1157 ++ +AS +++ A +S +A +S +A ++ A +S A ++ +A + Sbjct: 931 GYGSTQTASFKSTLMAGYGSSQTAREQSSLTAGYGSTSMAGYDSSLIAGYGSTQTAGYQS 990 Query: 1158 SMSASTSASTSASMSASTSASMSATTSASTSVSTSASTSASTSASTSSS 1206 +++A ++ +A S++ +A +T +A S A +S ++ S Sbjct: 991 TLTAGYGSTQTAEHSSTLTAGYGSTATAGADSSLIAGYGSSLTSGIRSF 1039 Score = 57.1 bits (137), Expect = 5e-10 Identities = 108/565 (19%), Positives = 252/565 (44%), Gaps = 1/565 (0%) Query: 642 SESASTSASTSASTSASASASTSASISASTSASISASTSASTSASTSASTSASMSTSTSV 701 S T+ S T+ + S+ + S T+ S T+ S T+ S + S Sbjct: 284 KGSDLTAGYGSTGTAGADSSLIAGYGSTQTAGEESTQTAGYGSTQTAQKGSDLTAGYGST 343 Query: 702 STSASTSASMSASTSASTSASTSASTSASTSASTSASTSASTSASMSASTSASTSASMSA 761 T+ S+ ++ S T+ S+ T+ S T+ S T+ S T+ + S+ ++ Sbjct: 344 GTAGDDSSLIAGYGSTQTAGEDSSLTAGYGSTQTAQKGSDLTAGYGSTGTAGADSSLIAG 403 Query: 762 STSASTSASTSASMSASTSASTSASTSASTSASISASTSASMSASTSASTSASTSASMSA 821 S T+ S + S T+ S T+ S T+ S+ + S T+ S+ Sbjct: 404 YGSTQTAGEESTQTAGYGSTQTAQKGSDLTAGYGSTGTAGDDSSLIAGYGSTQTAGEDSS 463 Query: 822 STSASTSASTSASTSASTSASTSASMSASMSASTSASMSASTSASTSASTSASTSASTSA 881 T+ S T+ S T+ S S + S+ + S T+ S T+ S T+ Sbjct: 464 LTAGYGSTQTAQKGSDLTAGYGSTSTAGYESSLIAGYGSTQTAGYGSTLTAGYGSTQTAQ 523 Query: 882 STSASTSASTSTSTSASTSASMSASTSASTSASTSASMSASTSASISASTSASMSASTSA 941 + S + STST+ + S+ ++ S T++ S ++A ++ +A + ++A + Sbjct: 524 NESDLITGYGSTSTAGANSSLIAGYGSTQTASYNS-VLTAGYGSTQTAREGSDLTAGYGS 582 Query: 942 STSASTSASTSASMSASTSASTSASTSASTSASMSASTSASTSASTSASTSASMSASTSA 1001 + +A + +S A ++ +AS +S +A ++ +A + + ++++A +S A Sbjct: 583 TGTAGSDSSIIAGYGSTQTASYHSSLTAGYGSTQTAREQSVLTTGYGSTSTAGADSSLIA 642 Query: 1002 STSASTSASTSASTSASTSASTSASTSSSTSASTSASTSASTSASMSASTSASTSASTSA 1061 ++ +A ++ +A ++ +A S +A ++++A +S+ A ++ +A ++ Sbjct: 643 GYGSTQTAGYNSILTAGYGSTQTAQEGSDLTAGYGSTSTAGADSSLIAGYGSTQTAGYNS 702 Query: 1062 SMSASTSSSTSASMSASTSASTSASTSASTSASTSASMSASTSASTSASMSASTSASMSA 1121 ++A S+ +A + ++ ++++A +S A ++ +AS +S++A ++ +A Sbjct: 703 ILTAGYGSTQTAQEGSDLTSGYGSTSTAGADSSLIAGYGSTQTASYHSSLTAGYGSTQTA 762 Query: 1122 STSASTSASTSASMSASTSASTSASMSASTSASKSASMSASTSASTSASMSASTSASMSA 1181 + + ++ +A +S A ++ +A + ++A ++ +A + + + Sbjct: 763 REQSVLTTGYGSTSTAGADSSLIAGYGSTQTAGYHSILTAGYGSTQTAQERSDLTTGYGS 822 Query: 1182 TTSASTSVSTSASTSASTSASTSSS 1206 T++A S A ++ +A +S Sbjct: 823 TSTAGADSSLIAGYGSTQTAGYNSI 847 Score = 51.7 bits (123), Expect = 2e-08 Identities = 130/587 (22%), Positives = 242/587 (41%), Gaps = 5/587 (0%) Query: 623 YGYTQVDGESDANAEKKFLSESASTSASTSASTSASASASTSASI-----SASTSASISA 677 YG TQ + +++A + +A ++ +A + +SI S T++ S+ Sbjct: 548 YGSTQTASYNSVLTAGYGSTQTAREGSDLTAGYGSTGTAGSDSSIIAGYGSTQTASYHSS 607 Query: 678 STSASTSASTSASTSASMSTSTSVSTSASTSASMSASTSASTSASTSASTSASTSASTSA 737 T+ S T+ S + S ST+ + S+ ++ S T+ S T+ S T+ Sbjct: 608 LTAGYGSTQTAREQSVLTTGYGSTSTAGADSSLIAGYGSTQTAGYNSILTAGYGSTQTAQ 667 Query: 738 STSASTSASMSASTSASTSASMSASTSASTSASTSASMSASTSASTSASTSASTSASISA 797 S T+ S ST+ + S+ ++ S T+ S + S T+ S TS S Sbjct: 668 EGSDLTAGYGSTSTAGADSSLIAGYGSTQTAGYNSILTAGYGSTQTAQEGSDLTSGYGST 727 Query: 798 STSASMSASTSASTSASTSASMSASTSASTSASTSASTSASTSASTSASMSASMSASTSA 857 ST+ + S+ + S T++ S+ T+ S T+ S T+ S S + + S+ + Sbjct: 728 STAGADSSLIAGYGSTQTASYHSSLTAGYGSTQTAREQSVLTTGYGSTSTAGADSSLIAG 787 Query: 858 SMSASTSASTSASTSASTSASTSASTSASTSASTSTSTSASTSASMSASTSASTSASTSA 917 S T+ S T+ S T+ S T+ STST+ + S+ ++ S T+ S Sbjct: 788 YGSTQTAGYHSILTAGYGSTQTAQERSDLTTGYGSTSTAGADSSLIAGYGSTQTAGYNSI 847 Query: 918 SMSASTSASISASTSASMSASTSASTSASTSASTSASMSASTSASTSASTSASTSASMSA 977 + S + S + S ST+ S+ + S T+ S T+ S + Sbjct: 848 LTAGYGSTQTAQENSDLTTGYGSTSTAGYDSSLIAGYGSTQTAGYNSILTAGYGSTQTAQ 907 Query: 978 STSASTSASTSASTSASMSASTSASTSASTSASTSASTSASTSASTSASTSSSTSASTSA 1037 S T+ S ST+ S+ + S T++ S + S+ T+ SS T+ S Sbjct: 908 ENSDLTTGYGSTSTAGYESSLIAGYGSTQTASFKSTLMAGYGSSQTAREQSSLTAGYGST 967 Query: 1038 STSASTSASMSASTSASTSASTSASMSASTSSSTSASMSASTSASTSASTSASTSASTSA 1097 S + S+ ++ S T+ S + S+ T+ S T+ S +T+ + S+ + Sbjct: 968 SMAGYDSSLIAGYGSTQTAGYQSTLTAGYGSTQTAEHSSTLTAGYGSTATAGADSSLIAG 1027 Query: 1098 SMSASTSASTSASMSASTSASMSASTSASTSASTSASMSASTSASTSASMSASTSASKSA 1157 S+ TS S + S +S S T+ S+ +S S+ T+ S ++ +S+ Sbjct: 1028 YGSSLTSGIRSFLTAGYGSTLISGLRSVLTAGYGSSLISGRRSSLTAGYGSNQIASHRSS 1087 Query: 1158 SMSASTSASTSASMSASTSASMSATTSASTSVSTSASTSASTSASTS 1204 ++ S + + S + S+ T+ S S + S + Sbjct: 1088 LIAGPESTQITGNRSMLIAGKGSSQTAGYRSTLISGADSVQMAGERG 1134 Score = 35.5 bits (81), Expect = 0.002 Identities = 74/451 (16%), Positives = 198/451 (43%), Gaps = 1/451 (0%) Query: 623 YGYTQVDGESDANAEKKFLSESASTSASTSASTSASASASTSASISASTSASISASTSAS 682 YG TQ E + +A +S A ++ +A + ++A ++ +A + Sbjct: 756 YGSTQTAREQSVLTTGYGSTSTAGADSSLIAGYGSTQTAGYHSILTAGYGSTQTAQERSD 815 Query: 683 TSASTSASTSASMSTSTSVSTSASTSASMSASTSASTSASTSASTSASTSASTSASTSAS 742 + ++++A +S ++ +A ++ +A ++ +A ++ + ++++A Sbjct: 816 LTTGYGSTSTAGADSSLIAGYGSTQTAGYNSILTAGYGSTQTAQENSDLTTGYGSTSTAG 875 Query: 743 TSASMSASTSASTSASMSASTSASTSASTSASMSASTSASTSASTSASTSASISASTSAS 802 +S+ A ++ +A ++ +A ++ +A ++ + ++++A +S+ A ++ Sbjct: 876 YDSSLIAGYGSTQTAGYNSILTAGYGSTQTAQENSDLTTGYGSTSTAGYESSLIAGYGST 935 Query: 803 MSASTSASTSASTSASMSASTSASTSASTSASTSASTSASTSASMSASMSASTSASMSAS 862 +AS ++ A +S +A +S +A +++ A +S A ++ +A ++++A Sbjct: 936 QTASFKSTLMAGYGSSQTAREQSSLTAGYGSTSMAGYDSSLIAGYGSTQTAGYQSTLTAG 995 Query: 863 TSASTSASTSASTSASTSASTSASTSASTSTSTSASTSASMSASTSASTSASTSASMSAS 922 ++ +A S++ +A ++ +A +S +S ++ + + +A ++ + + + Sbjct: 996 YGSTQTAEHSSTLTAGYGSTATAGADSSLIAGYGSSLTSGIRSFLTAGYGSTLISGLRSV 1055 Query: 923 TSASISASTSASMSASTSASTSASTSASTSASMSAS-TSASTSASTSASTSASMSASTSA 981 +A +S + +S +A ++ AS +S+ A S + + S + S+ T+ Sbjct: 1056 LTAGYGSSLISGRRSSLTAGYGSNQIASHRSSLIAGPESTQITGNRSMLIAGKGSSQTAG 1115 Query: 982 STSASTSASTSASMSASTSASTSASTSASTSASTSASTSASTSASTSSSTSASTSASTSA 1041 S S + S M+ + + S T+ S + + S T+ S T+ + Sbjct: 1116 YRSTLISGADSVQMAGERGKLIAGADSTQTAGDRSKLLAGNNSYLTAGDRSKLTAGNDCI 1175 Query: 1042 STSASMSASTSASTSASTSASMSASTSSSTS 1072 + S T+ S T+ S S+ S Sbjct: 1176 LMAGDRSKLTAGINSILTAGCRSKLIGSNGS 1206
>PF05272#Virulence-associated E family protein Length = 892 Score = 35.4 bits (81), Expect = 2e-04 Identities = 25/103 (24%), Positives = 35/103 (33%), Gaps = 18/103 (17%) Query: 31 VVTLIGANGAGKTSILRTISGLVRPSQGSISFMGKPIHKLAARKIVGNGLAQVPEGRHVF 90 V L G G GK++++ T+ GL S K + +I G Sbjct: 598 SVVLEGTGGIGKSTLINTLVGLDFFSDTHFDI---GTGKDSYEQIAGI------------ 642 Query: 91 SSLSVMENLEMGAFLQKDREQNQKMLKKVFDRFPRLEERKNQD 133 E EM AF + D E + DR+ R QD Sbjct: 643 ---VAYELSEMTAFRRADAEAVKAFFSSRKDRYRGAYGRYVQD 682
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.7 bits (66), Expect = 0.012 Identities = 12/29 (41%), Positives = 14/29 (48%) Query: 34 LIGPNGAGKTTLFNLLTGVYLPSKGTISI 62 L G G GK+TL N L G+ S I Sbjct: 601 LEGTGGIGKSTLINTLVGLDFFSDTHFDI 629
>ARGDEIMINASE#Bacterial arginine deiminase signature. Length = 409 Score = 27.5 bits (61), Expect = 0.021 Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 9/42 (21%) Query: 61 NYIAIPHGKSSHVTEPAVVIGINSSEIPWETLDDNGVKVIVL 102 N +AI P +I + + + + ++NG+KV + Sbjct: 353 NVLAI---------APGEIIAYSRNHVTNKLFEENGIKVHRI 385
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 624 bits (1610), Expect = 0.0 Identities = 180/671 (26%), Positives = 301/671 (44%), Gaps = 65/671 (9%) Query: 9 KTRNIGIMAHVDAGKTTTTERILYYTGKIHKIGETHEGASQMDWMEQEQERGITITSAAT 68 K NIG++AHVDAGKTT TE +LY +G I ++G +G ++ D E++RGITI + T Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 69 TAQWDGHRVNIIDTPGHVDFTIEVQRSLRVLDGAVTVLDAQSGVEPQTETVWRQATEYGV 128 + QW+ +VNIIDTPGH+DF EV RSL VLDGA+ ++ A+ GV+ QT ++ + G+ Sbjct: 62 SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGI 121 Query: 129 PRIVFANKMDKIGADFLYSVQSLHDRLQANAHPIQLPIGSEDDFRGIIDLIKMKAEIYTN 188 P I F NK+D+ G D Q + ++L A +IK K E+Y N Sbjct: 122 PTIFFINKIDQNGIDLSTVYQDIKEKLSAEI------------------VIKQKVELYPN 163 Query: 189 DLGTDILEEDIPAEYVDQANEYREKLVEAVADTDEDLMMKYLEGEEITNEELMAAIRKAT 248 T+ E + + V + ++DL+ KY+ G+ + EL Sbjct: 164 MCVTNFTESE---------------QWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRF 208 Query: 249 INVEFYPVLCGSAFKNKGVQLMLDAVIDYLPSPLDIPAIKGINPDTDEEETRPASDEEPF 308 N +PV GSA N G+ +++ + + S + Sbjct: 209 HNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSSTH-------------------RGQSEL 249 Query: 309 AALAFKIMTDPFVGRLTFFRVYSGVLNSGSYVLNTSKGKRERIGRILQMHANSRQEIETV 368 FKI RL + R+YSGVL+ V + K K +I + +I+ Sbjct: 250 CGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEK-IKITEMYTSINGELCKIDKA 308 Query: 369 YAGDIAAAVG----LKDTTTGDSLTDEKSKVILESIEVPEPVIQLMVEPKSKADQDKMGI 424 Y+G+I L GD+ + E IE P P++Q VEP ++ + Sbjct: 309 YSGEIVILQNEFLKLNS-VLGDTKLLPQR----ERIENPLPLLQTTVEPSKPQQREMLLD 363 Query: 425 ALQKLAEEDPTFRVETNVETGETVISGMGELHLDVLVDRMKREFKVEANVGAPQVSYRET 484 AL ++++ DP R + T E ++S +G++ ++V ++ ++ VE + P V Y E Sbjct: 364 ALLEISDSDPLLRYYVDSATHEIILSFLGKVQMEVTCALLQEKYHVEIEIKEPTVIYME- 422 Query: 485 FRASTQARGFFKRQSGGKGQFGDVWIEFTPNEEGKGFEFENAIVGGVVPREFIPAVEKGL 544 R +A + + + + +P G G ++E+++ G + + F AV +G+ Sbjct: 423 -RPLKKAEYTIHIEVPPNPFWASIGLSVSPLPLGSGMQYESSVSLGYLNQSFQNAVMEGI 481 Query: 545 VESMANGVLAGYPMVDVKAKLYDGSYHDVDSSETAFKIAASLALKEAAKSAQPAILEPMM 604 G L G+ + D K G Y+ S+ F++ A + L++ K A +LEP + Sbjct: 482 RYGCEQG-LYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQVLKKAGTELLEPYL 540 Query: 605 LVTITAPEDNLGDVMGHVTARRGRVDGMEARGNTQVVRAFVPLAEMFGYATVLRSATQGR 664 I AP++ L + + + N ++ +P + Y + L T GR Sbjct: 541 SFKIYAPQEYLSRAYTDAPKYCANIVDTQLKNNEVILSGEIPARCIQEYRSDLTFFTNGR 600 Query: 665 GTFMMVFDHYE 675 + Y Sbjct: 601 SVCLTELKGYH 611
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 28.3 bits (63), Expect = 0.045 Identities = 25/112 (22%), Positives = 46/112 (41%), Gaps = 6/112 (5%) Query: 168 PLDNAKAYQAKVSSGKVVIAGSSSVTPVMEKIKEAYHKVNAKVDVEIQQSDSSTGITSAI 227 P N ++Y K + K + + +E + + + V I +D+ I Sbjct: 379 PSQNVQSYYKKYNKLKKSEEA---ANEQLLQNEEELNYLYS-VLTNINNADNYDEIEEIK 434 Query: 228 DGSADIG-MASRELDKTESSKGVKA-TVIATDGIAVVVNKKNKVNDLSTKQV 277 + G + +++ K++ SK K I+ DGI + V K N ND T + Sbjct: 435 KELIETGYIKFKKIYKSKKSKTSKPMHFISKDGIDIYVGKNNIQNDYLTLKF 486
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 42.2 bits (99), Expect = 2e-07 Identities = 24/121 (19%), Positives = 50/121 (41%), Gaps = 9/121 (7%) Query: 48 QNTGWT---ALTSPVYDRKWTESDLEKNLAN--GMSFFVAEVDDKIAGVLDFGPYYPFPA 102 +N WT S Y +++ + D++ + G + F+ +++ G + + Sbjct: 31 ENGVWTYTEERFSKPYFKQYEDDDMDVSYVEEEGKAAFLYYLENNCIGRIKIRSNW---- 86 Query: 103 GKHVATFGILIAEPYQGQGLGKALLKALLTEAKAQGYIKIAMHVMGNNSRAISLYQKYGF 162 + I +A+ Y+ +G+G ALL + AK + + + N A Y K+ F Sbjct: 87 NGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHF 146 Query: 163 T 163 Sbjct: 147 I 147
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 32.1 bits (73), Expect = 0.004 Identities = 33/158 (20%), Positives = 53/158 (33%), Gaps = 46/158 (29%) Query: 6 ALRMRPRNINEIIGQ----QHLVGNGKIIDRMVAANMLSSMILYGPPGIGKTSIASAIA- 60 L ++ ++G+ Q + +++ R + L+ MI G G GK +A A+ Sbjct: 128 KLEDDSQDGMPLVGRSAAMQEIY---RVLAR-LMQTDLTLMIT-GESGTGKELVARALHD 182 Query: 61 ---------------------------GTTKYAFRTFNATVDSKKRLQEIAEEAKFSGGL 93 G K AF A S R ++ + G Sbjct: 183 YGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTG--AQTRSTGRFEQ-------AEGG 233 Query: 94 VLLLDEIHRLDKTKQDFLLPLLENGNIIMIGATTENPF 131 L LDEI + Q LL +L+ G +G T Sbjct: 234 TLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRS 271
>ARGREPRESSOR#Bacterial arginine repressor signature. Length = 149 Score = 29.8 bits (67), Expect = 0.006 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 5/54 (9%) Query: 1 MVKSSRLIDIWLYINNHKKFTTTELATK-----FNVSTRTIQRDIDELSLLGVP 49 M K R I I I ++ T EL +NV+ T+ RDI EL L+ VP Sbjct: 1 MNKGQRHIKIREIITANEIETQDELVDILKKDGYNVTQATVSRDIKELHLVKVP 54
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 26.8 bits (59), Expect = 0.014 Identities = 12/40 (30%), Positives = 22/40 (55%) Query: 57 ELSPKITQFAQLLEDINQQLLKVADVVEQTDSDIASQINQ 96 ++ P+I + +L +I Q++ VAD T SD+ + N Sbjct: 489 KVKPQINEGDSVLLEIEQEVSSVADAASSTSSDLGATFNT 528
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 35.3 bits (81), Expect = 6e-04 Identities = 39/150 (26%), Positives = 63/150 (42%), Gaps = 18/150 (12%) Query: 629 WAKNKLLINGFIATLAATILFFAVQFIGLKPDYPGKTYF--IILLTAW---TLMALVTAL 683 WA K A LA + +G + Y +I LT +L +VTAL Sbjct: 120 WAATK-------AALAGAGIGVVAAALGYTQ-WLSLLYALPVIALTGLAFASLGMVVTAL 171 Query: 684 V-GWDNRYGSFLSLLILLFQLGSSAGTYPIELSPKFFQTIQPFLPMTYSVSGLRETI--S 740 +D Y F L++ L S +P++ P FQT FLP+++S+ +R + Sbjct: 172 APSYD--YFIFYQTLVITPILFLSGAVFPVDQLPIVFQTAARFLPLSHSIDLIRPIMLGH 229 Query: 741 LTGDVNHQWRMLVIFLVSSMILALLIYRKQ 770 DV L I++V L+ + R++ Sbjct: 230 PVVDVCQHVGALCIYIVIPFFLSTALLRRR 259
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 40.0 bits (93), Expect = 1e-06 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 2/62 (3%) Query: 1 MVNDTRREK--TKRAIEAAMITLLKDQSFDEISTINLTKTAGISRSSFYTHYKDKYEMID 58 M T++E T++ I + L Q S + K AG++R + Y H+KDK ++ Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60 Query: 59 QY 60 + Sbjct: 61 EI 62
>LUXSPROTEIN#Bacterial autoinducer-2 (AI-2) production protein LuxS signature. Length = 171 Score = 157 bits (398), Expect = 6e-52 Identities = 56/151 (37%), Positives = 83/151 (54%), Gaps = 4/151 (2%) Query: 7 VESFELDHTIVKAPYVRLISEEVGPVGDIITNFDIRLIQPNENAIDTAGLHTIEHLLAKL 66 ++SF +DHT + AP VR+ P GD IT FD+R PN++ + G+HT+EHL A Sbjct: 3 LDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGF 62 Query: 67 IRQRING----LIDCSPFGCRTGFHMIMWGKQDATEIAKVIKSSLEAIAGGVTWEDVPGT 122 +R +NG +ID SP GCRTGF+M + G ++A +++E + +P Sbjct: 63 MRNHLNGDSVEIIDISPMGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVENQNKIPEL 122 Query: 123 TIESCGNYKDHSLHSAQEWAKLILSQGISDN 153 CG HSL A++ AK IL G++ N Sbjct: 123 NEYQCGTAAMHSLDEAKQIAKNILEVGVAVN 153
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 35.1 bits (80), Expect = 7e-04 Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 6/153 (3%) Query: 30 KEAAELTLLNAEQDAVDLRGKAEIEAEHIRKAAERESKAHQKELLLEAKEEARKYREEIE 89 KEA L+ + L+ K I K E + KA +KE EAKE+A+K +++ Sbjct: 110 KEAVNFALMTRDYQEF-LKTKKLIVDAPDPKELEEQKKALEKEK--EAKEQAQKAQKDKR 166 Query: 90 KEFKSDRQELKQMEARLTDRASSLDRKDENLSNKEKMLDSKEQSLTDKSRHINEREQEIA 149 ++ K +R + + LT+ S+ N + E + +E L R + +EQ A Sbjct: 167 EKRKEERAKNRANLENLTNAMSNPQNLSNNKNLSELIKQQRENELDQMERLEDMQEQAQA 226 Query: 150 TLETKKVEELSR--IAELSQEEAKDIILADTEK 180 K++EEL++ E ++ AKD I T+K Sbjct: 227 N-ALKQIEELNKKQAEEAVRQRAKDKISIKTDK 258
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.0 bits (67), Expect = 0.015 Identities = 13/32 (40%), Positives = 17/32 (53%) Query: 33 CVALIGPNGAGKTTLMSTLLGDISISSGSLTI 64 V L G G GK+TL++TL+G S I Sbjct: 598 SVVLEGTGGIGKSTLINTLVGLDFFSDTHFDI 629
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 66.0 bits (161), Expect = 4e-15 Identities = 24/119 (20%), Positives = 50/119 (42%), Gaps = 5/119 (4%) Query: 2 KLLVAEDQSMLRDAMCQLL-LMEESVSTIDQAGNGGEAIAILSNKAIDVAILDVEMPILS 60 +LVA+D + +R + Q L V N ++ D+ + DV MP + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRI---TSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 61 GLDVLEWVRK-YQNVKVIIVTTFKRSGYFQRAIRSNVDAYVLKDRSVADLMKTIQKVLS 118 D+L ++K ++ V++++ +A Y+ K + +L+ I + L+ Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.8 bits (69), Expect = 8e-04 Identities = 18/76 (23%), Positives = 24/76 (31%), Gaps = 3/76 (3%) Query: 24 QAKRAHELEAGEKATQDFKSVKSTLRALEEIESGNVVIHPDPSAKRASVRARIEAERLAK 83 Q + D SV S EEI + P P+ S AE + Sbjct: 990 QTVDTTNITTPNNIQADVPSVPSNN---EEIARVDEAPVPPPAPATPSETTETVAENSKQ 1046 Query: 84 EEEERKIKEQIAKEKE 99 E + + EQ A E Sbjct: 1047 ESKTVEKNEQDATETT 1062
>BINARYTOXINA#Clostridial binary toxin A signature. Length = 454 Score = 28.9 bits (64), Expect = 0.024 Identities = 23/125 (18%), Positives = 39/125 (31%), Gaps = 22/125 (17%) Query: 153 QKEWERLSGIAVSQQTKENTQTALKSFPKGTILVAKSSHTRI-FQDLDEKEIIVGGPYQA 211 +WE+ V + + AL+ + K + ++ S TR F D + Y+ Sbjct: 57 AIQWEKKEAERVEKNLDTLEKEALELYKKDSEQISNYSQTRQYFYDYQIESNPREKEYK- 115 Query: 212 TGGMGDTLCGMIAGMLAQFKEA---SPLDKVSVGVYLHSAIAQGLSKEAYVVLPTTISDE 268 + A + +DK Y S +KE IS E Sbjct: 116 -----------------NLRNAISKNKIDKPINVYYFESPEKFAFNKEIRTENQNEISLE 158 Query: 269 IPKEM 273 E+ Sbjct: 159 KFNEL 163
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 28.2 bits (63), Expect = 0.033 Identities = 6/27 (22%), Positives = 13/27 (48%), Gaps = 1/27 (3%) Query: 102 QSGARL-VYAVDVGTNQLVWKLRQDHR 127 Q R+ + +D+ + + + R D R Sbjct: 35 QLSGRVGMIEMDLASGRTLTAWRADER 61
>ARGREPRESSOR#Bacterial arginine repressor signature. Length = 149 Score = 87.6 bits (217), Expect = 7e-25 Identities = 42/153 (27%), Positives = 81/153 (52%), Gaps = 4/153 (2%) Query: 1 MKKSERLNLIKQIVLNHAVETQHELLRRLEAYGVTLTQATISRDMNEIGIIKVPSAKGRY 60 M K +R I++I+ + +ETQ EL+ L+ G +TQAT+SRD+ E+ ++KVP+ G Y Sbjct: 1 MNKGQRHIKIREIITANEIETQDELVDILKKDGYNVTQATVSRDIKELHLVKVPTNNGSY 60 Query: 61 IYSLSNENDPIFTTAVAKPIKTSILSISDKLLGLEQFININVIPGNSQLIKTFIMSHCQE 120 YSL + + + + + + + I I + +PGN+Q I + + E Sbjct: 61 KYSLPADQRFNPLSKLKRSLMDAFVKIDSA----SHLIVLKTMPGNAQAIGALMDNLDWE 116 Query: 121 HIFSLTADDNSLLLIAKSEADADHIRQSMIAML 153 I D+++L+I ++ D +++ ++ +L Sbjct: 117 EIMGTICGDDTILIICRTHDDTKVVQKKILELL 149
>BONTOXILYSIN#Bontoxilysin signature. Length = 1196 Score = 28.7 bits (64), Expect = 0.035 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 15/65 (23%) Query: 207 KTFSKWL----DNFV-ESAQTR---KIAEIG--ISYCGKA----DMANNFREKLAVLGAP 252 K + WL N+ + T+ + I + + GKA + +N+F E+ GA Sbjct: 556 KKYYLWLKEVFKNYSFDINLTQEIDSMCGINEVVLWFGKALNILNTSNSFVEEYQDSGA- 614 Query: 253 ISVLE 257 IS++ Sbjct: 615 ISLIS 619
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 125 bits (315), Expect = 2e-41 Identities = 84/91 (92%), Positives = 88/91 (96%) Query: 1 MANKQDLIAKVAEATELTKKDSAAAVDAVFAAVADYLAEGEKVQLIGFGNFEVRERAARK 60 MANKQDLIAKVAEATELTKKDSAAAVDAVF+AV+ YLA+GEKVQLIGFGNFEVRERAARK Sbjct: 1 MANKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARK 60 Query: 61 GRNPQTGAEIEIAASKVPAFKAGKALKDAVK 91 GRNPQTG EI+I ASKVPAFKAGKALKDAVK Sbjct: 61 GRNPQTGEEIKIKASKVPAFKAGKALKDAVK 91
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 74.5 bits (183), Expect = 1e-17 Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 4/120 (3%) Query: 3 TVLVVQGDDETIELLRSYLEGALYKVVMASDGEEAFSLFQQHQIDLAIIDITLPKIDGYE 62 T+LV D +L L A Y V + S+ + DL + D+ +P + ++ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 63 LTRLIRQ-DSQIPIIMLAAKTTDMDRILGLNIGADDFITKPFN---SLEVLARINSQLRR 118 L I++ +P+++++A+ T M I GA D++ KPF+ + ++ R ++ +R Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124
>THERMOLYSIN#Thermolysin metalloprotease (M4) family signature. Length = 544 Score = 33.8 bits (77), Expect = 3e-04 Identities = 23/110 (20%), Positives = 46/110 (41%), Gaps = 2/110 (1%) Query: 74 TKSAEYSYHVDVKTGQILERDMDNNGFSKSTSQSSSSSSQKSHKIS-QEEAKKIAFKDAN 132 A HV+ L + N ++ ++ S Q++ I+ Q+ A ++ + Sbjct: 102 CMGAVLVAHVNDGELSSLSGTLIPNLDKRTLKTEAAISIQQAEMIAKQDVADRVTKERPA 161 Query: 133 IEESEVSNLKIKEEIENGKSVYDIDFVDLKNK-NEVDYQIDAETGKIIER 181 EE + + L I + E + Y+++ L Y IDA GK++ + Sbjct: 162 AEEGKPTRLVIYPDEETPRLAYEVNVRFLTPVPGNWIYMIDAADGKVLNK 211
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.3 bits (65), Expect = 0.018 Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 4/38 (10%) Query: 27 EPG----QVVVLLGPSGSGKSTLIRTMNALESIDDGSL 60 EPG VVL G G GKSTLI T+ L+ D Sbjct: 590 EPGCKFDYSVVLEGTGGIGKSTLINTLVGLDFFSDTHF 627
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 91.4 bits (227), Expect = 2e-23 Identities = 29/134 (21%), Positives = 65/134 (48%), Gaps = 1/134 (0%) Query: 3 KILIVDDEKPISDIIKFNLTKEGYETATAFDGREALVQYAEFQPDLIILDLMLPELDGLE 62 IL+ DD+ I ++ L++ GY+ + A DL++ D+++P+ + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 63 VAKEVRKT-SHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTEN 121 + ++K +P++++SA+++ + E GA DY+ KPF EL+ + L + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 122 IETAVAEESAQNAS 135 + + ++S Sbjct: 125 RPSKLEDDSQDGMP 138
>PF06580#Sensor histidine kinase Length = 349 Score = 33.7 bits (77), Expect = 0.001 Identities = 30/191 (15%), Positives = 67/191 (35%), Gaps = 42/191 (21%) Query: 252 DETNRMMRMISDLL--SLSRIDNEVTHLDVEMTNFTAFMTSILNRFDQIRNQKTVTGKVY 309 + M+ +S+L+ SL + L E+T +++ +F+ ++ ++ Sbjct: 191 TKAREMLTSLSELMRYSLRYSNARQVSLADELTVVDSYLQLASIQFE---DRLQFENQIN 247 Query: 310 EIVRDYPLKSIWVEIDTDKMTQVIDNILNNAVKY----SPDGGKITVNLRTTKTQMILSI 365 + D + + ++ ++ N +K+ P GGKI + + L + Sbjct: 248 PAIMDVQVPPM-----------LVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEV 296 Query: 366 SDQGLGIPKKDLPLIFDRFYRVDKARSRQQGGTGLGLSIAKEIVKQHKGF---IWAKSEY 422 + G K + TG GL +E ++ G I + Sbjct: 297 ENTGSLALK------------------NTKESTGTGLQNVRERLQMLYGTEAQIKLSEKQ 338 Query: 423 GKGSTFTIVLP 433 GK +++P Sbjct: 339 GKV-NAMVLIP 348
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 50.1 bits (119), Expect = 4e-08 Identities = 43/334 (12%), Positives = 115/334 (34%), Gaps = 21/334 (6%) Query: 167 VLKYKTRKKETQSKLEQTQGNLDRLEDIIYELDMQVQPLEKQASIAKRFLVLDEERQGLH 226 + K + ++ L + + LE +L+ ++ + + Sbjct: 94 LSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNF--------STADSAKIKT 145 Query: 227 LSILIEDILQHQSDLTTVEEKLLTVRKELATYYQQRQSLEDENQSLKQKRHHLSEEIEAK 286 L + ++DL E + + + ++LE E +L+ ++ L + +E Sbjct: 146 LEAEKAALAARKADLEKALEGAMNFSTADSA---KIKTLEAEKAALEARQAELEKALEGA 202 Query: 287 QLALLDVTKLKSDLERQIDLIRLESNQKAEKKEEAGQRLAELEIKAKDCSDQITQKNIEL 346 + LE + A +K + + L + S +I E Sbjct: 203 MNFSTADSAKIKTLEAEKA-------ALAARKADLEKALEGAMNFSTADSAKIKTLEAEK 255 Query: 347 TTLSEKIAQIRSEIVSTESSLERFSTNPDQI---IEKLREDFVTLMQEEADTSNALTALL 403 L + A++ + + S + L + L + + +L Sbjct: 256 AALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLR 315 Query: 404 ADIENQKQASQAKSQEIQEVSKNLEVLKSNAKVALERFEAAKKNVRQLLSHYQDLGQTLQ 463 D++ ++A + E Q++ + ++ +++ + +A+++ +QL + +Q L + + Sbjct: 316 RDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNK 375 Query: 464 NLEGEYKNQQSILFDHLDEIKSKQARISSLESIL 497 E ++ + L + K + + S L Sbjct: 376 ISEASRQSLRRDLDASREAKKQVEKALEEANSKL 409 Score = 42.7 bits (100), Expect = 8e-06 Identities = 40/261 (15%), Positives = 82/261 (31%), Gaps = 17/261 (6%) Query: 674 KPELDNLKKELKQAQSKQLIQEKEVATLLEQLKEKQETLAQLKNDGEQARLEEQRADIEY 733 K +L K L + SK E A L + L+ + E+ Sbjct: 98 KEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARK 157 Query: 734 QQLSEKLADLNKLYNGLQLSSGALEQTTSENEKNRLEKELEQFAIKKEELTTSIAQIKED 793 L + L ++ + + T E EK LE + E Sbjct: 158 ADLEKALEGAMN-----FSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAK 212 Query: 794 KDSIQEKVNNLTTLLSEAQLEERDLLNEQKFERANCTRLEITLSEIKRDISNLQTLLSHQ 853 +++ + L ++ + +N + A LE + ++ + L Sbjct: 213 IKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAEL------- 265 Query: 854 DSQLDKEELPRIEKQLLQVNNRRENDEEKLVSLRFELEDCEAALDDLAASLAKEGQKNES 913 ++ L + + + E + +L E D E L A+ + ++ Sbjct: 266 -----EKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDA 320 Query: 914 LIRQQAQLESQCEQLSQQLMI 934 + QLE++ ++L +Q I Sbjct: 321 SREAKKQLEAEHQKLEEQNKI 341 Score = 31.6 bits (71), Expect = 0.021 Identities = 30/242 (12%), Positives = 87/242 (35%), Gaps = 5/242 (2%) Query: 760 TTSENEKNRLEKELEQFAIKKEELTTSIAQIKEDKDSIQEKVNNLTTLLSEAQLEERDLL 819 + + ++++ ++F I+ L + + + ++++ + LT LS A+ + R Sbjct: 46 RSQTDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKND 105 Query: 820 NEQKFERANCTRLEITLSEIKRDISNLQTLLSHQDSQLD-----KEELPRIEKQLLQVNN 874 + + LE +++++ + + +++ K L + L + Sbjct: 106 KSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALE 165 Query: 875 RRENDEEKLVSLRFELEDCEAALDDLAASLAKEGQKNESLIRQQAQLESQCEQLSQQLMI 934 N + LE +AAL+ A L K + + + E L Sbjct: 166 GAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAA 225 Query: 935 FSRQLSEDYQMTLDEAKVKANVLEDILMAREQLKSLQAKIKALGPVNIDAIAQFEEVHER 994 L + + ++ + + ++ + + L++ QA+++ ++ + Sbjct: 226 RKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKT 285 Query: 995 LT 996 L Sbjct: 286 LE 287
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 120 bits (301), Expect = 1e-32 Identities = 60/226 (26%), Positives = 106/226 (46%), Gaps = 22/226 (9%) Query: 34 YGVIWNTLGVPMANLITYFAQHQGLGFGVAIIIVTVIVRVVILPLGLYQSWKASYQA-EK 92 YG +W + P+ L+ + G +G +III+T IVR ++ PL KA Y + K Sbjct: 330 YGWLW-FISQPLFKLLKWIHSFVG-NWGFSIIIITFIVRGIMYPLT-----KAQYTSMAK 382 Query: 93 MAYFKPLFEPINERLRNAKTQEEKLAAQTELMTAQRENGLSMFGGIGCLPLLIQMPFFSA 152 M +P + + ERL + +K E+M + ++ GG C PLLIQMP F A Sbjct: 383 MRMLQPKIQAMRERLGD-----DKQRISQEMMALYKAEKVNPLGG--CFPLLIQMPIFLA 435 Query: 153 IFFAARYTPGVSSATFLG----LNLGQKSLTLTVIIAILYFVQSWLSMQGVPDEQRQQMK 208 +++ + + A F L+ L +++ + F +S V D +Q++ Sbjct: 436 LYYMLMGSVELRQAPFALWIHDLSAQDPYYILPILMGVTMFFIQKMSPTTVTDPMQQKI- 494 Query: 209 TMMYLMPIMMVFMSISLPASVALYWFIGGIFSIIQQLVTTYVLKPK 254 M MP++ + P+ + LY+ + + +IIQQ + L+ + Sbjct: 495 --MTFMPVIFTVFFLWFPSGLVLYYIVSNLVTIIQQQLIYRGLEKR 538
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 31.7 bits (72), Expect = 0.002 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 5/46 (10%) Query: 110 EIIRAALLAVDHGQWEAARALGLKTPTIYR-----GIIIPQATRIA 150 +I AAL A Q +AA LGL T+ + G+ + +++R A Sbjct: 439 PLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGVSVYRSSRSA 484
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 45.8 bits (108), Expect = 5e-07 Identities = 36/214 (16%), Positives = 71/214 (33%), Gaps = 22/214 (10%) Query: 19 EQILAELEEANRLRKLREEELYQKEQEAKEAARRTAQLMADYEAQRLKDE-QEARAKALE 77 E E + + + E Q + AKEA E + E +E + + Sbjct: 1042 ENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETK 1101 Query: 78 TKQRLEEQEKARIEAKLLAEAAREEERRQAEQALASQEEQVINQGMEPSRELDSGSKSSE 137 +E++EKA++E E +E + ++ + ++ + + EP+RE D E Sbjct: 1102 ETATVEKEEKAKVE----TEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKE 1157 Query: 138 FRTTENVPDIDLKADKTDVATAVPNQETEEIFLVRATDIPTEGENVKLGEISELEPVAKE 197 ++ N AD A + + + N + P + Sbjct: 1158 PQSQTNTT-----ADTEQPAKETSSNVEQPV----TESTTVNTGNSVVENPENTTPATTQ 1208 Query: 198 PIRVEDLSKEEEGIALSAKNKHNKRERRQKADNV 231 P + S + + ++R R NV Sbjct: 1209 PTVNSESSNKPK--------NRHRRSVRSVPHNV 1234
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 30.3 bits (68), Expect = 0.002 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 3/56 (5%) Query: 88 ITSLSIHPDFKGQGIGTALLAAMKDLVVSQERDGISLTCHDDLIS---FYEMNGFK 140 I +++ D++ +G+GTALL + G+ L D IS FY + F Sbjct: 92 IEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFI 147
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 77.6 bits (191), Expect = 9e-19 Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 2/103 (1%) Query: 3 VLIIEDDPMVEFIHRNYLEKLNYFQNIYSTASQTQAIAYLNDIKIQLVLLDIHIKEGNGL 62 +L+ +DD + + L + Y ++ T++ ++ LV+ D+ + + N Sbjct: 6 ILVADDDAAIRTVLNQALSRAGY--DVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 63 ELLKLLRNQHQNTEVIVISAANEAHTVKEAFHLGIVDYLIKPF 105 +LL ++ + V+V+SA N T +A G DYL KPF Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPF 106
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 164 bits (416), Expect = 3e-50 Identities = 76/332 (22%), Positives = 142/332 (42%), Gaps = 43/332 (12%) Query: 1 MAVLILGGAGYIGSHMVDQLITQGKEKVIVVDNLVTGH-------RQAV--HSDAIFYEG 51 M L+ G AG+IG H+ +L+ G +V+ +DNL + R + F++ Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAG-HQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKI 59 Query: 52 DLSDKTFMRQVFRENPDVDAVIHFAAFSLVAESMENPLKYFDNNTAGMIKLLEVMNECDI 111 DL+D+ M +F + V V S+ENP Y D+N G + +LE I Sbjct: 60 DLADREGMTDLFASGH-FERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKI 118 Query: 112 KNIVFSSTAATYGIPEQVPILETAP-QNPINPYGESKLMMETIMKWADQAYGIKFVALRY 170 ++++++S+++ YG+ ++P +P++ Y +K E + YG+ LR+ Sbjct: 119 QHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRF 178 Query: 171 FNVAGDKPDGSIGEDHKPETHLLPIILQVAQGVRDKIMIFGDDYNTPDGTNVRDYVHPFD 230 F V G P G +P+ L + +G I ++ G RD+ + D Sbjct: 179 FTVYG--PWG------RPDMALFKFTKAMLEG--KSIDVYN------YGKMKRDFTYIDD 222 Query: 231 LADAHILAVDYLRQGNES---------------NVFNLGSSTGFSNLQMLEAARRITGKE 275 +A+A I D + + V+N+G+S+ + ++A G E Sbjct: 223 IAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIE 282 Query: 276 IPAQKAARRPGDPDTLIASSEKARQMLGWEPK 307 +PGD A ++ +++G+ P+ Sbjct: 283 AKKNMLPLQPGDVLETSADTKALYEVIGFTPE 314
>PF05272#Virulence-associated E family protein Length = 892 Score = 35.0 bits (80), Expect = 5e-04 Identities = 13/56 (23%), Positives = 19/56 (33%), Gaps = 9/56 (16%) Query: 34 IVFVGPSGCGKSTTLRMIAGLEDISEGELKIDGEVVNDKSPKDRDIAMVFQNYALY 89 +V G G GKST + + GL+ S+ I +D Y Sbjct: 599 VVLEGTGGIGKSTLINTLVGLDFFSDTHFDI---------GTGKDSYEQIAGIVAY 645
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 43.7 bits (103), Expect = 5e-07 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 4/54 (7%) Query: 215 LQHILDTSDTSAIIKALWQEQGNLAKTAKALFIHRNSLQYKLDKFTQSSGLNLK 268 +L + I+ AL +GN K A L ++RN+L+ K+ + G+++ Sbjct: 429 YDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIREL----GVSVY 478
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 93.7 bits (233), Expect = 2e-24 Identities = 33/123 (26%), Positives = 62/123 (50%) Query: 2 KILVVEDEFDLNRSIVKLLKKQHYSVDSASNGEEALQFVSVAEYDVIILDVMMPKMDGFT 61 ILV +D+ + + + L + Y V SN ++++ + D+++ DV+MP + F Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 FLKLLRNKGSQVSILMLTARDAVEDRIAGLDFGADDYLVKPFEFGELMARIRAMLRRTNR 121 L ++ + +L+++A++ I + GA DYL KPF+ EL+ I L R Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 122 QVS 124 + S Sbjct: 125 RPS 127
>PF06580#Sensor histidine kinase Length = 349 Score = 30.2 bits (68), Expect = 0.017 Identities = 13/81 (16%), Positives = 28/81 (34%), Gaps = 21/81 (25%) Query: 345 LLKRLFENLFSNAI--KFTNNHISISLRQSDNQIVFSIKDNGLGISVDDQSKIWNRFYQV 402 L++ L EN + I I + + + + +++ G Sbjct: 259 LVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTG------------------ 300 Query: 403 DSARTKDSQSGIGLGLSLVKQ 423 S K+++ G GL V++ Sbjct: 301 -SLALKNTKESTGTGLQNVRE 320
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 376 bits (966), Expect = e-133 Identities = 142/311 (45%), Positives = 204/311 (65%), Gaps = 7/311 (2%) Query: 3 KIVVALGGNALGN-----SPEEQLRLVKHTAKSLVALIKKGHEIVVSHGNGPQVGAINLG 57 ++V+ALGGNAL S EE + V+ TA+ + +I +G+E+V++HGNGPQVG++ L Sbjct: 4 RVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLLLH 63 Query: 58 MNFAAESGQGTNFPFPECGAMSQGYIGYHLQQSLLNELRQEGINKEVATIITQIEVDESD 117 M+ + P GAMSQG+IGY +QQ+L NELR+ G+ K+V TIITQ VD++D Sbjct: 64 MDAGQATYGIPAQPMDVAGAMSQGWIGYMIQQALKNELRKRGMEKKVVTIITQTIVDKND 123 Query: 118 QAFSAPTKPIGTFYDKETSEKIAIEKGYTFVEDAGRGYRRVVASPEPKKIIEINSIKTLI 177 AF PTKP+G FYD+ET++++A EKG+ ED+GRG+RRVV SP+PK +E +IK L+ Sbjct: 124 PAFQNPTKPVGPFYDEETAKRLAREKGWIVKEDSGRGWRRVVPSPDPKGHVEAETIKKLV 183 Query: 178 ENDTLVIAGGGGGIPVI-NKGGYEGIAAVIDKDKSSALLAGELAADQLIILTAVDYVYTQ 236 E +VIA GGGG+PVI G +G+ AVIDKD + LA E+ AD +ILT V+ Sbjct: 184 ERGVIVIASGGGGVPVILEDGEIKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNGAALY 243 Query: 237 FGKENQKALTEVNENQMIDYVNQGEFAKGSMLPKVIACMSFLDHNPKGTALITSLNGLED 296 +G E ++ L EV ++ Y +G F GSM PKV+A + F++ + A+I L + Sbjct: 244 YGTEKEQWLREVKVEELRKYYEEGHFKAGSMGPKVLAAIRFIEWGGE-RAIIAHLEKAVE 302 Query: 297 ALDGKLGTRIT 307 AL+GK GT++ Sbjct: 303 ALEGKTGTQVL 313
>PF06580#Sensor histidine kinase Length = 349 Score = 41.0 bits (96), Expect = 6e-06 Identities = 28/175 (16%), Positives = 58/175 (33%), Gaps = 32/175 (18%) Query: 256 NIIKGLGTYF----SVKNESTMALKDIFQIVLSYTRSIIQFRHQDIIILENNKCNLIISN 311 ++ L N ++L D +V SY + + +D + EN N I + Sbjct: 195 EMLTSLSELMRYSLRYSNARQVSLADELTVVDSYL-QLASIQFEDRLQFENQ-INPAIMD 252 Query: 312 YYYLLTIISNIVLNAVE-AIDKQKK-GTISVHTEELEDFIKIEISDNGPGIPDKMKHMIF 369 ++ +V N ++ I + + G I + + + +E+ + G K Sbjct: 253 VQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKEST- 311 Query: 370 KPGFSTKFDANGDIYRGIGLSHVR----ILMEEQYQGTITVCPNQPNGTTFTLLF 420 G GL +VR +L + Q ++ + +L Sbjct: 312 ----------------GTGLQNVRERLQMLYGTEAQIKLS---EKQGKVNAMVLI 347
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 64.9 bits (158), Expect = 5e-14 Identities = 28/144 (19%), Positives = 63/144 (43%), Gaps = 9/144 (6%) Query: 5 IIDDDPTITMILQDIIE-EDFNNTVVRVNNVSSKAYNELLIADVDIVLIDLLMPILDGVT 63 + DDD I +L + + V +N ++ + + D D+V+ D++MP + Sbjct: 8 VADDDAAIRTVLNQALSRAGY--DVRITSNAAT-LWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 64 LVQKIYKQRSDLKFIMISQVKDNDLRQEAYKAGIEFFINKPINIIEVKSVVKRVTDTI-- 121 L+ +I K R DL +++S +A + G ++ KP ++ E+ ++ R Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 122 ---EMQKKLNTIQNLLENTPSYQK 142 +++ L+ + + Q+ Sbjct: 125 RPSKLEDDSQDGMPLVGRSAAMQE 148
>ARGREPRESSOR#Bacterial arginine repressor signature. Length = 149 Score = 128 bits (324), Expect = 6e-41 Identities = 58/149 (38%), Positives = 95/149 (63%), Gaps = 4/149 (2%) Query: 1 MNKKETRHQLIRSLVSETKVRTQHELRELLEKNGVSVTQATLSRDMKELNLIKVNESSDN 60 MNK + RH IR +++ ++ TQ EL ++L+K+G +VTQAT+SRD+KEL+L+KV N Sbjct: 1 MNKGQ-RHIKIREIITANEIETQDELVDILKKDGYNVTQATVSRDIKELHLVKV---PTN 56 Query: 61 ATETYYEIHSISQKRWEERLRFYMEDALVMLFPVQNQIVLKTLPGLAQSFGSILDSILLP 120 Y + + + +L+ + DA V + + IVLKT+PG AQ+ G+++D++ Sbjct: 57 NGSYKYSLPADQRFNPLSKLKRSLMDAFVKIDSASHLIVLKTMPGNAQAIGALMDNLDWE 116 Query: 121 EILATVCGDDTCLIICNNSEEAQKCFEKL 149 EI+ T+CGDDT LIIC ++ + +K+ Sbjct: 117 EIMGTICGDDTILIICRTHDDTKVVQKKI 145
>ARGDEIMINASE#Bacterial arginine deiminase signature. Length = 409 Score = 570 bits (1471), Expect = 0.0 Identities = 191/408 (46%), Positives = 275/408 (67%), Gaps = 8/408 (1%) Query: 6 PIHVFSEIGKLKKVMLHRPGKEIENLMPDYLERLLFDDIPFLEDAQKEHDAFAQALRNEG 65 PI++FSEIG+LKKV+LHRPG+E+ENL P ++ LFDDIP+LE A++EH+ FA L+N Sbjct: 7 PINIFSEIGRLKKVLLHRPGEELENLTPFIMKNFLFDDIPYLEVARQEHEVFASILKNNL 66 Query: 66 VEVLYLENLAAESL-TNQEIREQFIDEYIGEANVRGRATKKAIRELLLNIKDNKELIEKT 124 VE+ Y+E+L +E L ++ + +FI ++I EA ++ T +++ + +I K Sbjct: 67 VEIEYIEDLISEVLVSSVALENKFISQFILEAEIKTDFTINLLKDYFSS-LTIDNMISKM 125 Query: 125 MAGIQKSELPEIPSSEKGLTDLVESNYPFAIDPMPNLYFTRDPFATIGNGVSLNHMFSET 184 ++G+ EL SS L DLV F IDPMPN+ FTRDPFA+IGNGV++N MF++ Sbjct: 126 ISGVVTEELKNYTSS---LDDLVNGANLFIIDPMPNVLFTRDPFASIGNGVTINKMFTKV 182 Query: 185 RNRETLYGKYIFTHHPEYGGKVPMVYDREETTRIEGGDELVLSKDVLAVGISQRTDAASI 244 R RET++ +YIF +HP Y VP+ +R E +EGGDELVL+K +L +GIS+RT+A S+ Sbjct: 183 RQRETIFAEYIFKYHPVYKENVPIWLNRWEEASLEGGDELVLNKGLLVIGISERTEAKSV 242 Query: 245 EKLLVNIFKQNLGFKKVLAFEFANNRKFMHLDTVFTMVDYDKFTIHPEIEGDLRVYSVTY 304 EKL +++FK F +LAF+ NR +MHLDTVFT +DY FT + +Y +TY Sbjct: 243 EKLAISLFKNKTSFDTILAFQIPKNRSYMHLDTVFTQIDYSVFTSFTSDDMYFSIYVLTY 302 Query: 305 ENQD--LHIEEEKGDLAVLLAKNLGVEKVELIRCGGDNLVAAGREQWNDGSNTLTIAPGV 362 +HI++EK + +L+ LG K+++I+C G +L+ REQWNDG+N L IAPG Sbjct: 303 NPSSSKIHIKKEKARIKDVLSFYLG-RKIDIIKCAGGDLIHGAREQWNDGANVLAIAPGE 361 Query: 363 VVVYNRNTITNAILESKGLKLIKINGSELVRGRGGPRCMSMPFEREDL 410 ++ Y+RN +TN + E G+K+ +I SEL RGRGGPRCMSMP RED+ Sbjct: 362 IIAYSRNHVTNKLFEENGIKVHRIPSSELSRGRGGPRCMSMPLIREDI 409
>AUTOINDCRSYN#Autoinducer synthesis protein signature. Length = 216 Score = 30.2 bits (68), Expect = 0.002 Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 7/64 (10%) Query: 1 MPYQRAASLY-IRFSVFVIER-----NIKMEEEFDDNDEQDTIYAVLYDGKQPVSTGRFL 54 + ++ L+ +R F +R EFD D +T Y + + RF+ Sbjct: 12 LSETKSGELFTLRKETFK-DRLNWAVQCTDGMEFDQYDNNNTTYLFGIKDNTVICSLRFI 70 Query: 55 PETQ 58 Sbjct: 71 ETKY 74
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 410 bits (1056), Expect = e-147 Identities = 147/314 (46%), Positives = 211/314 (67%), Gaps = 6/314 (1%) Query: 6 QKIVVALGGNAIL--STDASAKAQQEALINTSKSLVKLIKEGHDVIVTHGNGPQVGNLLL 63 +++V+ALGGNA+ S + + + T++ + ++I G++V++THGNGPQVG+LLL Sbjct: 3 KRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLLL 62 Query: 64 QQAAADSEKN-PAMPLDTCVAMTEGSIGFWLQNALNNELQEQGIDKEVATVVTQVIVDEK 122 A + PA P+D AM++G IG+ +Q AL NEL+++G++K+V T++TQ IVD+ Sbjct: 63 HMDAGQATYGIPAQPMDVAGAMSQGWIGYMIQQALKNELRKRGMEKKVVTIITQTIVDKN 122 Query: 123 DQAFTNPTKPIGPFLSEEDAKKQAQETGSKFKEDAGRGWRKVVPSPKPVGIKEASVIRRL 182 D AF NPTKP+GPF EE AK+ A+E G KED+GRGWR+VVPSP P G EA I++L Sbjct: 123 DPAFQNPTKPVGPFYDEETAKRLAREKGWIVKEDSGRGWRRVVPSPDPKGHVEAETIKKL 182 Query: 183 VDSGVVVISAGGGGVPVIEDANTKALKGVEAVIDKDFASQTLSELVDADLFIVLTGVDNV 242 V+ GV+VI++GGGGVPVI + +KGVEAVIDKD A + L+E V+AD+F++LT V+ Sbjct: 183 VERGVIVIASGGGGVPVILEDG--EIKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNGA 240 Query: 243 FVNFNKPNQEKLEEVTVSQMKQYITENQFAPGSMLPKVEAAIAFVENKPEARAIITSLEN 302 + + ++ L EV V ++++Y E F GSM PKV AAI F+E RAII LE Sbjct: 241 ALYYGTEKEQWLREVKVEELRKYYEEGHFKAGSMGPKVLAAIRFIEW-GGERAIIAHLEK 299 Query: 303 IDNVLAENAGTQII 316 L GTQ++ Sbjct: 300 AVEALEGKTGTQVL 313