>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 31.2 bits (70), Expect = 0.009 Identities = 46/325 (14%), Positives = 107/325 (32%), Gaps = 11/325 (3%) Query: 64 NSNNQENSDSKKENETNIKVNNNDIKTLKLKLEDLKSQKLKIEAEYNKKELELKNK--AT 121 S QE K + E ++ N K++ L+++K + A E L+ + Sbjct: 112 ASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFS 171 Query: 122 KTITEAKNSLETTKSTIKQEIEKNNNKLENLTKDLTIEYE-IDDIKEELEQLDELLLETK 180 + +LE K+ ++ + LE T + I ++ E L + + Sbjct: 172 TADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLE 231 Query: 181 QLEKDNKQKLDIYEKDLDE-VKQLDKKIEEINSLIELVNNISMIEKQIQSTEDTYKQFIA 239 + + + + L + + + T + A Sbjct: 232 KALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKA 291 Query: 240 VEEKILEKIKQENKALETIKNDLITTDNFSDLFFLNNRRNYVFNYEYINNLKEEIAKNNK 299 E ++ +++ L + L + S R L+E+ + Sbjct: 292 ALEAEKADLEHQSQVLNANRQSLRRDLDAS-------REAKKQLEAEHQKLEEQNKISEA 344 Query: 300 QEQEIKKTKAQQEELKNKALEQLTKNKKLAEENKSKISELKNSLQEINSKKDIAAKRVLD 359 Q +++ E K + + K ++ + +++ L+ L K K + + Sbjct: 345 SRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQVEKALEE 404 Query: 360 NNNLYSQTKKLDSEYKDELKNLQKE 384 N+ + +KL+ E ++ K +KE Sbjct: 405 ANSKLAALEKLNKELEESKKLTEKE 429
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 46.6 bits (110), Expect = 3e-07 Identities = 52/347 (14%), Positives = 128/347 (36%), Gaps = 5/347 (1%) Query: 312 SELKKAIDEFNLAKAKIESETNKKEKDLISTAEKTITEAKNTLETTKESTIKKLEEIDNK 371 S + L K + ++ + E + + ++ L+ + ++L K Sbjct: 41 SAVATRSQTDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEK 100 Query: 372 ISQFEKDLIEKNIEDEIAKSKEAIDDINELLKDSCALVKEYSEKEKEFDKEVETARQLDK 431 + + +K L EK +I + + D+ + L+ + S K K + E L Sbjct: 101 LRKNDKSLSEK--ASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKA---ALAA 155 Query: 432 RMTSLDKYIKEREGLIAFASNFKKIIEETNTNSKKLIDENKVKLAKAEEKQKMLESIKED 491 R L+K ++ S K +E + E + L A + + Sbjct: 156 RKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKT 215 Query: 492 VNDEKNWSYEFYYNFDKTNPFRHNVFSKITTELENNKKEEEQLTKLVKQLEEQKQKLIDD 551 + EK + +K N + + +++ + E+ L +LE+ + ++ Sbjct: 216 LEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNF 275 Query: 552 LVIKKITAKQVKDRLPSLMTELDSITKEKQMLDKHLSEVNPQIVEIKKELESSKRDIENL 611 K ++ +L E + + Q+L+ + + + ++ + + + + L Sbjct: 276 STADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKL 335 Query: 612 EKGLQDANKIQEGLIKKLSDAKREITQLESQKVQLEKSLFELEAKTK 658 E+ + + ++ L + L ++ QLE++ +LE+ EA + Sbjct: 336 EEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQ 382 Score = 45.8 bits (108), Expect = 4e-07 Identities = 51/334 (15%), Positives = 101/334 (30%), Gaps = 2/334 (0%) Query: 329 ESETNKKEKDLISTAEKTITEAKNTLETTKESTIKKLEEIDNKISQFEKDL--IEKNIED 386 E K++ + LE K K LE N + + +E Sbjct: 93 ELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAA 152 Query: 387 EIAKSKEAIDDINELLKDSCALVKEYSEKEKEFDKEVETARQLDKRMTSLDKYIKEREGL 446 A+ + + + S A + E E +L+K + + Sbjct: 153 LAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAK 212 Query: 447 IAFASNFKKIIEETNTNSKKLIDENKVKLAKAEEKQKMLESIKEDVNDEKNWSYEFYYNF 506 I K + + +K ++ K K LE+ K + + + Sbjct: 213 IKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGA 272 Query: 507 DKTNPFRHNVFSKITTELENNKKEEEQLTKLVKQLEEQKQKLIDDLVIKKITAKQVKDRL 566 + + E + E+ L + L +Q L DL + KQ++ Sbjct: 273 MNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEH 332 Query: 567 PSLMTELDSITKEKQMLDKHLSEVNPQIVEIKKELESSKRDIENLEKGLQDANKIQEGLI 626 L + +Q L + L +++ E + + + E Q + + Sbjct: 333 QKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASR 392 Query: 627 KKLSDAKREITQLESQKVQLEKSLFELEAKTKET 660 + ++ + + S+ LEK ELE K T Sbjct: 393 EAKKQVEKALEEANSKLAALEKLNKELEESKKLT 426 Score = 36.6 bits (84), Expect = 3e-04 Identities = 58/330 (17%), Positives = 110/330 (33%), Gaps = 16/330 (4%) Query: 279 EQIEAENKKQEEIIKRELQKAKDRNIRIHKE-AISELKKAIDEFNLAKAKIESETNKKEK 337 E +A+ +K E + + E A +KA E L A S + + Sbjct: 119 EARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKI 178 Query: 338 DLISTAEKTITEAKNTLETTKESTIKKLEEIDNKISQFEKDL--IEKNIEDEIAKSKEAI 395 + + + + LE E + KI E + + D + A+ Sbjct: 179 KTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAM 238 Query: 396 DDINELLKDSCALVKEYSEKEKEFDKEVETARQLDKRMTSLDKYIKEREGLIAFASNFKK 455 + L E + E + + T+ IK E A K Sbjct: 239 NFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKA 298 Query: 456 IIEETNTNSKKLIDENKVKLAKAEEKQKMLESIKEDVNDEKNWSYEFYYNFDKTNPFRHN 515 +E + + L + E +K LE+ + + ++ S R + Sbjct: 299 DLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKIS----------EASRQS 348 Query: 516 VFSKITTELENNKKEEEQLTKLVKQL---EEQKQKLIDDLVIKKITAKQVKDRLPSLMTE 572 + + E K+ E + KL +Q E +Q L DL + KQV+ L ++ Sbjct: 349 LRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQVEKALEEANSK 408 Query: 573 LDSITKEKQMLDKHLSEVNPQIVEIKKELE 602 L ++ K + L++ + E++ +LE Sbjct: 409 LAALEKLNKELEESKKLTEKEKAELQAKLE 438
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 33.7 bits (77), Expect = 0.001 Identities = 11/70 (15%), Positives = 26/70 (37%), Gaps = 2/70 (2%) Query: 98 NEVIKEIDREVLEWLITDLFKEEILKKHKVDNLDELIEKIKEKFGTNITNKEIMKILGLP 157 ++ ++E R+ L + + + LI N + +LGL Sbjct: 405 SQAVEENMRQYFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQI--KAADLLGLN 462 Query: 158 KSTFYYKLKK 167 ++T K+++ Sbjct: 463 RNTLRKKIRE 472
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 32.9 bits (75), Expect = 0.002 Identities = 27/168 (16%), Positives = 62/168 (36%), Gaps = 6/168 (3%) Query: 188 EKELKALFEKVKEAKEQADKLAKQKEAADKAKNKEFVEVLDEVNKLSATFEKELKQLAQK 247 E+E+ L +KE QKE K E + VL +N+ E +L Sbjct: 181 EEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDF 240 Query: 248 FKEIKEKLAKEKELKDQKNNKEFVEVLDEVNKLSATFEKELKALFKKIADNELEKERLYK 307 + ++ + + +Q+N E ++ +L+ + +I + E + + + Sbjct: 241 SSLLHKQAIAKHAVLEQENK------YVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQ 294 Query: 308 EFTTSSSNATEYYFETLDTKEEVREWNFEKGRLVELISSIDRQVKELK 355 F + + + N E+ + + + + +V++LK Sbjct: 295 LFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLK 342
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 47.4 bits (112), Expect = 2e-07 Identities = 30/252 (11%), Positives = 77/252 (30%), Gaps = 8/252 (3%) Query: 479 QNKEKELLKEEKRLETELEEERGSIKELDNENKLYERIIEDLKKETYDSDLWFYDYGDWT 538 Q + + E L+ + + + K L + N + + K++ + + Sbjct: 56 QERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRK------NDKSLS 109 Query: 539 LWTGFNHNKIARLKGYIYGNNELKKEVPNIIKNLEKELETTKQQNQEQIKQLKQTNTKTK 598 AR ++ LE K + L++ Sbjct: 110 EKASKIQELEARKADLEKALEGAMNFSTADSAKIK-TLEAEKAALAARKADLEKALEGAM 168 Query: 599 EKITEISKTLQPIETEKSNVDKQLLDLNPEIVKTKQNIELYKNSLKTLEEKITTNTKIQK 658 T S ++ +E EK+ ++ + +L + +KTLE + + Sbjct: 169 NFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKA 228 Query: 659 ELSTKIYEYTSNELNLEKEKEEISNSISELEKAINKVISESKQQYENQLLELEKQAHSLE 718 +L + + + + + + LE + + ++ + N + +LE Sbjct: 229 DLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAE-LEKALEGAMNFSTADSAKIKTLE 287 Query: 719 SKEDEKIKEIEK 730 +++ E Sbjct: 288 AEKAALEAEKAD 299 Score = 39.7 bits (92), Expect = 4e-05 Identities = 51/409 (12%), Positives = 115/409 (28%), Gaps = 17/409 (4%) Query: 354 ERTRIEKEYNNKEKELEALATNNLVTLKKDYDDQKERLETRKKENEVKLNELKLELPKIK 413 E + + E + + L K + +EL EL K Sbjct: 39 EVSAVATRSQTDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAK 98 Query: 414 EQEANAKEEIKDSTELLEDAKLLLKENEVKQAEHNKVLDKAKELDSQINSINKQIESKNQ 473 E+ + + + +++ + + E + + + ++ Sbjct: 99 EKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKA 158 Query: 474 L----ITNNQNKEKELLKEEKRLETELEEERGSIKELDNENKLYERIIEDLKKETYDSDL 529 + N + K LE E EL+ + + + Sbjct: 159 DLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEA 218 Query: 530 WFYDYGDWTLWTGFNHNKIARLKGYIYGNNELKKEVPNIIKNLEKELETTKQQNQEQIKQ 589 + + ++ + ELE + Sbjct: 219 EKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTA 278 Query: 590 LKQTNTKTKEKITEISKTLQPIETEKSNVDKQLLDLNPEIVKTKQNIELYKNSLKTLEEK 649 + + + +E + ++ L ++ +++ + + + LEE+ Sbjct: 279 DSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQ 338 Query: 650 ITTNTKIQKELSTKIYEYTSNELNLEKE--KEEISNSISELEKA-----------INKVI 696 + ++ L + + LE E K E N ISE + K + Sbjct: 339 NKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQV 398 Query: 697 SESKQQYENQLLELEKQAHSLESKEDEKIKEIEKTIAKLRESIKLLNQK 745 ++ ++ ++L LEK LE + KE + AKL K L +K Sbjct: 399 EKALEEANSKLAALEKLNKELEESKKLTEKEKAELQAKLEAEAKALKEK 447
>SECA#SecA protein signature. Length = 901 Score = 868 bits (2244), Expect = 0.0 Identities = 339/837 (40%), Positives = 495/837 (59%), Gaps = 66/837 (7%) Query: 3 SDKRLLKKFGKIADKIIALEPQMRQLKDEDFILKTQEFKQMLEDGKSLDDILIEVYAVAR 62 + R L++ K+ + I A+EP+M +L DE+ KT EF+ LE G+ L++++ E +AV R Sbjct: 13 RNDRTLRRMRKVVNIINAMEPEMEKLSDEELKGKTAEFRARLEKGEVLENLIPEAFAVVR 72 Query: 63 EAARRVLGLNAYKVQLIGGIILNSGDIAEMRTGEGKTLTGIFPAYLNALSGKGVHIVTVN 122 EA++RV G+ + VQL+GG++LN IAEMRTGEGKTLT PAYLNAL+GKGVH+VTVN Sbjct: 73 EASKRVFGMRHFDVQLLGGMVLNERCIAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVN 132 Query: 123 EYLSKRDSEINGQVFDLLGISVGLNGSSLTKTEKREAYNKDITYTTNAELGFDYLRDNMV 182 +YL++RD+E N +F+ LG++VG+N + KREAY DITY TN E GFDYLRDNM Sbjct: 133 DYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAYAADITYGTNNEYGFDYLRDNMA 192 Query: 183 SDYSLKVQRKLNYCIIDEADSVLIDEARTPLIISGGTSTRINLYKAANNFALTLKEHDDL 242 +VQRKL+Y ++DE DS+LIDEARTPLIISG +YK N L + Sbjct: 193 FSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNKIIPHLIRQEKE 252 Query: 243 D-----------IDLESKQVYLNEQGMKKANEFFSLK-------NLFAIENTEIFHLIMN 284 D +D +S+QV L E+G+ E + +L++ N + H + Sbjct: 253 DSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHVTA 312 Query: 285 ALKAQFAFKEGVEYTVRDNEILLIDQFTGRIMHGRSYSDGLQQALQAKENVDIEEETVTL 344 AL+A F V+Y V+D E++++D+ TGR M GR +SDGL QA++AKE V I+ E TL Sbjct: 313 ALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTL 372 Query: 345 ATITYQNFYRLYSKIAGMTGTAKTEEEEFIKIYNTRVIQTPTNKPVIRKDEPDLTFGTKN 404 A+IT+QN++RLY K+AGMTGTA TE EF IY + PTN+P+IRKD PDL + T+ Sbjct: 373 ASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEA 432 Query: 405 AALKKLVEDVLEAHEKGAPILIGTTSVESSEQIARYLKKANLKFETINAKNHDREAEIVS 464 ++ ++ED+ E KG P+L+GT S+E SE ++ L KA +K +NAK H EA IV+ Sbjct: 433 EKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVA 492 Query: 465 KAGEIGAITLATNMAGRGTDIKL-----------------------------AKGVAELG 495 +AG A+T+ATNMAGRGTDI L V E G Sbjct: 493 QAGYPAAVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAG 552 Query: 496 GLRVFGVERNEARRIDNQLRGRSGRQGDPGLSRFYISMDDDLMMRFTAPKTRQRFKALG- 554 GL + G ER+E+RRIDNQLRGRSGRQGD G SRFY+SM+D LM F + + + LG Sbjct: 553 GLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDALMRIFASDRVSGMMRKLGM 612 Query: 555 --DDYIKSKMFTRAVTNAQKKLEGMNFDQRKNVLDYDNILAQQREIIYAQRDDILEANDL 612 + I+ T+A+ NAQ+K+E NFD RK +L+YD++ QR IY+QR+++L+ +D+ Sbjct: 613 KPGEAIEHPWVTKAIANAQRKVESRNFDIRKQLLEYDDVANDQRRAIYSQRNELLDVSDV 672 Query: 613 SVVIEKM------QITAAY---ELIEKHSTLVHGEKTINKKELLDAIDGTLVPKNKFRVD 663 S I + AY + +E+ + ++ + LD + K Sbjct: 673 SETINSIREDVFKATIDAYIPPQSLEEMWDIPGLQERLKNDFDLDLPIAEWLDKE----- 727 Query: 664 DFNNKEKMDLAVEIAEAMMQLYKARISDIPDDVIIGMERKIILDSFDKYWTKHLDIAGKL 723 + L I +++Y+ + + +++ E+ ++L + D W +HL L Sbjct: 728 --PELHEETLRERILAQSIEVYQRKEEVVGAEMMRHFEKGVMLQTLDSLWKEHLAAMDYL 785 Query: 724 KSGIYLQQYAQNNPLAIYVEQATDLFNKMKINIANEVVENLANVILRVVEDEEQREE 780 + GI+L+ YAQ +P Y ++ +F M ++ EV+ L+ V +R+ E+ E+ E+ Sbjct: 786 RQGIHLRGYAQKDPKQEYKRESFSMFAAMLESLKYEVISTLSKVQVRMPEEVEELEQ 842
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 596 bits (1539), Expect = 0.0 Identities = 167/672 (24%), Positives = 296/672 (44%), Gaps = 63/672 (9%) Query: 8 LNTRNIGIMAHIDAGKTTTTERILFHTGKIHKIGETHEGASQMDWMAQEQERGITITSAA 67 + NIG++AH+DAGKTT TE +L+++G I ++G +G ++ D E++RGITI + Sbjct: 1 MKIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGI 60 Query: 68 TTAFWKNTRFNIIDTPGHVDFTVEVERSLRVLDGAVAVLDGQSGVEPQTETVWRQATNYK 127 T+ W+NT+ NIIDTPGH+DF EV RSL VLDGA+ ++ + GV+ QT ++ Sbjct: 61 TSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMG 120 Query: 128 VPRIVFVNKMDKTGADFIYSVKTIGDRLGAKAAPIQLPIGAEENFTGIIDLVEMKAYEFD 187 +P I F+NK+D+ G D + I ++L A+ Q K + Sbjct: 121 IPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQ------------------KVELYP 162 Query: 188 GKPEENYKEIEIPTNLLEQAKELRAHLVEVAVEYDEELLMKFLDGGEISISELKSAIRKG 247 N+ E E + +E +++LL K++ G + EL+ Sbjct: 163 NMCVTNFTESE---------------QWDTVIEGNDDLLEKYMSGKSLEALELEQEESIR 207 Query: 248 VINADFFPVLAGSAFKNKGVKLLLDAVVDYLPSPLDIPSIKGILPTGEEVKRHADDTEPF 307 N FPV GSA N G+ L++ + + S Sbjct: 208 FHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSSTH------------------RGQSEL 249 Query: 308 SALAFKVMTDPFVGKLTFFRVYSGILTKGSYVLNSTKQQKERVGRILQMHANNRTEIEEV 367 FK+ +L + R+YSG+L V S K+ K ++ + +I++ Sbjct: 250 CGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKE-KIKITEMYTSINGELCKIDKA 308 Query: 368 YSGDIAAAVG--LK-NTTTGDTLCDEKGEIILESMVFPEPVIQLALEPKTKADQEKMSIA 424 YSG+I LK N+ GDT + E I P P++Q +EP +E + A Sbjct: 309 YSGEIVILQNEFLKLNSVLGDTKLLPQRERIE----NPLPLLQTTVEPSKPQQREMLLDA 364 Query: 425 LSKLAEEDPTFRTYTDDETGQTIIAGMGELHLDIIVDRMKREFNVATNVGAPQVSYRETI 484 L ++++ DP R Y D T + I++ +G++ +++ ++ +++V + P V Y E Sbjct: 365 LLEISDSDPLLRYYVDSATHEIILSFLGKVQMEVTCALLQEKYHVEIEIKEPTVIYMERP 424 Query: 485 KLPGKAEGKYIKQSGGRGSYGHVVIEFEPN-KDKGFEWVDKITGGRVSKEYINSARVGLE 543 KAE + + + + P G ++ ++ G +++ + N+ G+ Sbjct: 425 L--KKAEYTIHIEVPPNPFWASIGLSVSPLPLGSGMQYESSVSLGYLNQSFQNAVMEGIR 482 Query: 544 NALRNGVIAGYPMIDVKATIVDGSMHEVDSNEMAYKIAASMALKEASKKMNPVVLEPIMN 603 G + G+ + D K G + S +++ A + L++ KK +LEP ++ Sbjct: 483 YGCEQG-LYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQVLKKAGTELLEPYLS 541 Query: 604 VEVTVPDEYYGDVMGNISSKRGIIEGSEQRGNAQTIKSKVPLTEMFGYATELRSFTQGRG 663 ++ P EY + I ++ + N + ++P + Y ++L FT GR Sbjct: 542 FKIYAPQEYLSRAYTDAPKYCANIVDTQLKNNEVILSGEIPARCIQEYRSDLTFFTNGRS 601 Query: 664 NYTMIFSHYAEA 675 Y Sbjct: 602 VCLTELKGYHVT 613
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 89.5 bits (222), Expect = 2e-21 Identities = 53/150 (35%), Positives = 83/150 (55%), Gaps = 7/150 (4%) Query: 13 VNIGTIGHVDHGKTTLTAAI---TKVLSEQGNAEFKDYANIDNAPEERERGITINTAHVE 69 +NIG + HVD GKTTLT ++ + ++E G+ + DN ER+RGITI T Sbjct: 4 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGT-TRTDNTLLERQRGITIQTGITS 62 Query: 70 YKTANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLSRQVGVP 129 ++ N +D PGH D++ + + +DGAIL+++A DG QTR R++G+P Sbjct: 63 FQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIP 122 Query: 130 KIVVFLNKCDMVEDDEMIDLVEMEIRDLLT 159 I F+NK D D + V +I++ L+ Sbjct: 123 TI-FFINKIDQNGID--LSTVYQDIKEKLS 149
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 28.7 bits (64), Expect = 0.031 Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 8/92 (8%) Query: 75 NKLRINNIIETLIYFIIPLVFIVFNFLYEKQSIVYSIITSLLCLIIISSLIYYFHINKEI 134 + N L+ +VF+ LYE SI S++ + L I+ L+ Sbjct: 864 QERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLV-VPLGIVGVLLAAT------ 916 Query: 135 ISDPDLSIYKSIIVLITIIGLLILVNILKLTF 166 + + +Y ++ L+T IGL IL + F Sbjct: 917 LFNQKNDVY-FMVGLLTTIGLSAKNAILIVEF 947 Score = 28.3 bits (63), Expect = 0.037 Identities = 10/70 (14%), Positives = 34/70 (48%) Query: 79 INNIIETLIYFIIPLVFIVFNFLYEKQSIVYSIITSLLCLIIISSLIYYFHINKEIISDP 138 I+ +++TL I+ + +++ FL ++ + I + L+ +++ F + ++ Sbjct: 337 IHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMF 396 Query: 139 DLSIYKSIIV 148 + + ++V Sbjct: 397 GMVLAIGLLV 406
>TYPE3OMGPROT#Type III secretion system outer membrane G protein family signature. Length = 607 Score = 29.9 bits (67), Expect = 0.021 Identities = 13/86 (15%), Positives = 34/86 (39%), Gaps = 3/86 (3%) Query: 18 ASVARELAKFDKKIVVLEANPRLALETSSHNSGLVHGGFDPRPETLNAKLNVLGKKRYED 77 A++ + + D I + + + + ++ S DP + + + Y+ Sbjct: 212 ATILQRVLS-DATIQQVTVDNQRIPQAATRASAQARVEADPSLNAIIVRDSPERMPMYQR 270 Query: 78 WIKEMDFP--YLRIDSTIVAFNDEEM 101 I +D P + + +IV N +++ Sbjct: 271 LIHALDKPSARIEVALSIVDINADQL 296
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 32.1 bits (73), Expect = 0.004 Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 5/59 (8%) Query: 151 KIAVVG-AGYIGVELVEAFNEYGKDVTLIDVANRIMPVYYDQEFTDLMQEKMTKAGVKL 208 K V G AG+IG + + E G V ID N YYD E + + G + Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLND----YYDVSLKQARLELLAQPGFQF 56
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 33.8 bits (77), Expect = 0.001 Identities = 18/85 (21%), Positives = 29/85 (34%), Gaps = 2/85 (2%) Query: 170 SSSAQPVSQPAPAPTPAPVASQPAP--APTPAPAITPTIKVVEPSAPLSWDEVPMNGVRK 227 +PV +P P P P P + AP P P P K V+ D P+ Sbjct: 67 QPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESRPA 126 Query: 228 ATVKAMTKSHTEIAAFTGMKNTDIT 252 + + + + T + +T Sbjct: 127 SPFENTAPARPTSSTATAATSKPVT 151
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 49.7 bits (118), Expect = 2e-08 Identities = 61/373 (16%), Positives = 134/373 (35%), Gaps = 1/373 (0%) Query: 71 QQLESYKTELNDKISSLKISHNNQIDQIKEFKKNHNLLKTISLKELEDKVSNLDDQNKKT 130 L+ ++L+ +LK ++ +++ K+ SL E K+ L+ + Sbjct: 67 NTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDK-SLSEKASKIQELEARKADL 125 Query: 131 LKQIEHNDKLLKAHQDKLNYLTNLKNQYTKQITTLEQNKNENLKQINQINLQTKSLETKI 190 K +E A K+ L K + LE+ + + + K+LE + Sbjct: 126 EKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEK 185 Query: 191 INLNQQIKQTNELLVNKTNQNNQLKTQITTLSNQITDNNVLIRSTNQLISDIQAEKNKLL 250 L + + + L N + +I TL + + + Sbjct: 186 AALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADS 245 Query: 251 EQLEQLINKLNEAKKTSKQKSEQISNLEKQINDNNQKLEDLKAKNNQTINTIAKLTNDNQ 310 +++ L + + + + + ++ K++ L+A+ A L + +Q Sbjct: 246 AKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQ 305 Query: 311 NNNDSIDKLTKALLNNQNSIKQITHNNSILTNNLNELNKKNQKVLSELIKLSELIKSKQL 370 N + L + L ++ + KQ+ + L Q + +L E K + Sbjct: 306 VLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEA 365 Query: 371 ELGNKTKQLEKQTNLLQALINNNSENDNKLKLLINTNSENQNKISSLTIQNKELDNLINS 430 E +Q + Q+L + + K + E +K+++L NKEL+ Sbjct: 366 EHQKLEEQNKISEASRQSLRRDLDASREAKKQVEKALEEANSKLAALEKLNKELEESKKL 425 Query: 431 TQQQKEKLIEKLK 443 T+++K +L KL+ Sbjct: 426 TEKEKAELQAKLE 438 Score = 47.0 bits (111), Expect = 2e-07 Identities = 40/277 (14%), Positives = 100/277 (36%) Query: 271 SEQISNLEKQINDNNQKLEDLKAKNNQTINTIAKLTNDNQNNNDSIDKLTKALLNNQNSI 330 + + L+ + +D + + LK N++ ++ + N+ S+ + + + Sbjct: 63 EIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARK 122 Query: 331 KQITHNNSILTNNLNELNKKNQKVLSELIKLSELIKSKQLELGNKTKQLEKQTNLLQALI 390 + N + K + + +E L+ + L + ++ L Sbjct: 123 ADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLE 182 Query: 391 NNNSENDNKLKLLINTNSENQNKISSLTIQNKELDNLINSTQQQKEKLIEKLKELSRNET 450 + + + L N ++ + + K L+ + +K L + L+ T Sbjct: 183 AEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFST 242 Query: 451 NLNEQITNFHSEKLNLESQINSLNEQIKNLKNINLQLTNDIKEHESEIEYLNNNLKENNI 510 + +I +EK LE++ L + ++ N + + IK E+E L + Sbjct: 243 ADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEH 302 Query: 511 KFKDLESQISLTEQQISQADEQIKELEDKKDPLERRK 547 + + L + + + + E K+LE + LE + Sbjct: 303 QSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQN 339 Score = 45.4 bits (107), Expect = 4e-07 Identities = 37/226 (16%), Positives = 80/226 (35%) Query: 326 NQNSIKQITHNNSILTNNLNELNKKNQKVLSELIKLSELIKSKQLELGNKTKQLEKQTNL 385 ++++++ N L KN + L + EL N ++L K Sbjct: 48 QTDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKS 107 Query: 386 LQALINNNSENDNKLKLLINTNSENQNKISSLTIQNKELDNLINSTQQQKEKLIEKLKEL 445 L + E + + L N ++ + + K L+ + +K L + L+ Sbjct: 108 LSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGA 167 Query: 446 SRNETNLNEQITNFHSEKLNLESQINSLNEQIKNLKNINLQLTNDIKEHESEIEYLNNNL 505 T + +I +EK LE++ L + ++ N + + IK E+E L Sbjct: 168 MNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARK 227 Query: 506 KENNIKFKDLESQISLTEQQISQADEQIKELEDKKDPLERRKNDLE 551 + + + + +I + + LE ++ LE+ Sbjct: 228 ADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAM 273 Score = 40.4 bits (94), Expect = 1e-05 Identities = 53/369 (14%), Positives = 129/369 (34%), Gaps = 7/369 (1%) Query: 183 TKSLETKIINLNQQIKQTNELLVNKTNQNNQLKTQITTLSNQITDNNVLIRSTNQLISDI 242 E + L + + + N++L +++ ++ N+ + I ++ Sbjct: 59 ADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQEL 118 Query: 243 QAEKNKLLEQLEQLINKLNEAKKTSKQKSEQISNLEKQINDNNQKLEDLKAKNNQTINTI 302 +A K L + LE +N +I LE + + DL+ +N Sbjct: 119 EARKADLEKALEGAMNFSTADS-------AKIKTLEAEKAALAARKADLEKALEGAMNFS 171 Query: 303 AKLTNDNQNNNDSIDKLTKALLNNQNSIKQITHNNSILTNNLNELNKKNQKVLSELIKLS 362 + + L + +++ + ++ + + L + + + L Sbjct: 172 TADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLE 231 Query: 363 ELIKSKQLELGNKTKQLEKQTNLLQALINNNSENDNKLKLLINTNSENQNKISSLTIQNK 422 + ++ + +++ AL +E + L+ +N ++ + KI +L + Sbjct: 232 KALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKA 291 Query: 423 ELDNLINSTQQQKEKLIEKLKELSRNETNLNEQITNFHSEKLNLESQINSLNEQIKNLKN 482 L+ + Q + L + L R+ E +E LE Q ++L+ Sbjct: 292 ALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRR 351 Query: 483 INLQLTNDIKEHESEIEYLNNNLKENNIKFKDLESQISLTEQQISQADEQIKELEDKKDP 542 K+ E+E + L K + + L + + + Q ++ ++E K Sbjct: 352 DLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQVEKALEEANSKLAA 411 Query: 543 LERRKNDLE 551 LE+ +LE Sbjct: 412 LEKLNKELE 420
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 65.9 bits (160), Expect = 3e-13 Identities = 41/271 (15%), Positives = 103/271 (38%) Query: 252 SVEIKKLEKNDKENNQKINELKNSNKNNSEEFKKLEELKNQTHSQLNQLNKQKDELEKQI 311 + ++K+++ + + N LK N + S K L++ ++ +L+ ++ + +K + Sbjct: 49 TDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSL 108 Query: 312 REKQDLFISKNTKAKKVQDQLNEINKKVNQTDQKTKEINDLYQQQLEKSKKIEKQIQDIK 371 EK + ++ L K K + + +EK ++ Sbjct: 109 SEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAM 168 Query: 372 NGIKVQDEELQKLLNKQTEKQQQVDQLKNENINAESKINEWIKTNKNLKTQLDTLIKKNE 431 N +++ L ++ + + +L+ A + K L+ + L + Sbjct: 169 NFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKA 228 Query: 432 ELNKQKEKLDSDINTYFEKKKELEEKKYHLIKQISDLKKQIDQESEKIKQKENQLKELTN 491 +L K E + K K LE +K L + ++L+K ++ ++K L Sbjct: 229 DLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEA 288 Query: 492 NYSDRQNKIKELKEENQRLESSINELNSRYE 522 + + + +L+ ++Q L ++ L + Sbjct: 289 EKAALEAEKADLEHQSQVLNANRQSLRRDLD 319 Score = 65.5 bits (159), Expect = 4e-13 Identities = 56/390 (14%), Positives = 134/390 (34%) Query: 49 ETNVNQYNEQINKTELEKQQLLEEIQKIEKEITSLKTEENNKVKELNLLTNKKNIINQQI 108 + + E+ +K E+E L + + +LK + +EL+ K ++ + Sbjct: 49 TDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSL 108 Query: 109 DNLNSQINSIDKTSKKEKQQINSLTEEIQKIKNNLTNATNQKNINLEQISNLENQVNQLK 168 S+I ++ ++ + + +K + ++LE + Sbjct: 109 SEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAM 168 Query: 169 TKTSQLEKELLEKKLNKEQLLLNKKKTESKVNKFKAALDNSNKEKQDLINQKTNLEKQIE 228 ++ ++ + K L + + E + + + + L +K L + Sbjct: 169 NFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKA 228 Query: 229 NQISESSQKDENYLNLKNKLNYLSVEIKKLEKNDKENNQKINELKNSNKNNSEEFKKLEE 288 + K+ L E LE E + + N + +S + K LE Sbjct: 229 DLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEA 288 Query: 289 LKNQTHSQLNQLNKQKDELEKQIREKQDLFISKNTKAKKVQDQLNEINKKVNQTDQKTKE 348 K ++ L Q L + + + K+++ + ++ ++ ++ + Sbjct: 289 EKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQS 348 Query: 349 INDLYQQQLEKSKKIEKQIQDIKNGIKVQDEELQKLLNKQTEKQQQVDQLKNENINAESK 408 + E K++E + Q ++ K+ + Q L ++ Q++ A SK Sbjct: 349 LRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQVEKALEEANSK 408 Query: 409 INEWIKTNKNLKTQLDTLIKKNEELNKQKE 438 + K NK L+ K+ EL + E Sbjct: 409 LAALEKLNKELEESKKLTEKEKAELQAKLE 438 Score = 63.2 bits (153), Expect = 2e-12 Identities = 55/427 (12%), Positives = 154/427 (36%), Gaps = 14/427 (3%) Query: 56 NEQINKTELEKQQLLEEIQKIEKEITSLKTEENNKVKELNLLTNKKNIINQQIDNLNSQI 115 + + + + ++K+++ + E N + + L+ + D L ++ Sbjct: 35 VNTNEVSAVATRSQTDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEEL 94 Query: 116 NSIDKTSKKEKQQINSLTEEIQKIKNNLTNATNQKNINLEQISNLENQVNQLKTKTSQLE 175 ++ + +K + ++ +IQ+++ + + + ++ L+ + + L Sbjct: 95 SNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALA 154 Query: 176 KELLEKKLNKEQLLLNKKKTESKVNKFKAALDNSNKEKQDLINQKTNLEKQIENQISESS 235 + + E + +K+ +A + +L ++ Sbjct: 155 ARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIK 214 Query: 236 QKDENYLNLKNKLNYLSVEIKKLEKNDKENNQKINELKNSNKNNSEEFKKLEELKNQTHS 295 + L + L ++ ++ KI L+ +LE+ + Sbjct: 215 TLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMN 274 Query: 296 QLNQLNKQKDELEKQIREKQDLFISKNTKAKKVQDQLNEINKKVNQTDQKTKEINDLYQQ 355 + + LE + + + L ++ +N Q + Sbjct: 275 FSTADSAKIKTLEAEKAALE-----------AEKADLEHQSQVLNANRQSLRRD---LDA 320 Query: 356 QLEKSKKIEKQIQDIKNGIKVQDEELQKLLNKQTEKQQQVDQLKNENINAESKINEWIKT 415 E K++E + Q ++ K+ + Q L ++ QL+ E+ E + + Sbjct: 321 SREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEAS 380 Query: 416 NKNLKTQLDTLIKKNEELNKQKEKLDSDINTYFEKKKELEEKKYHLIKQISDLKKQIDQE 475 ++L+ LD + +++ K E+ +S + + KELEE K K+ ++L+ +++ E Sbjct: 381 RQSLRRDLDASREAKKQVEKALEEANSKLAALEKLNKELEESKKLTEKEKAELQAKLEAE 440 Query: 476 SEKIKQK 482 ++ +K+K Sbjct: 441 AKALKEK 447 Score = 55.8 bits (134), Expect = 4e-10 Identities = 31/305 (10%), Positives = 100/305 (32%), Gaps = 21/305 (6%) Query: 235 SQKDENYLNLKNKLNYLSVEIKKLEKNDKENNQKINELKNSNKNNSEEFKKLEELKNQTH 294 + + ++ + + +E L+ + + + LK+ N +EE +E + Sbjct: 46 RSQTDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKND 105 Query: 295 SQLNQLNKQKDELEKQIREKQDLFISKNTKAKKVQDQLNEINKKVNQTDQKTKEINDLYQ 354 L++ + ELE + + + + ++ + + + ++ + Sbjct: 106 KSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALE 165 Query: 355 QQLEKSKKIEKQIQDIKNGIKVQDEELQKLLNKQTEKQQQVDQLKNENINAESKINEWIK 414 + S +I+ ++ + +L + E++ Sbjct: 166 GAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAA 225 Query: 415 TNKNLKTQLDTLIKKNEELNKQKEKLDSDINTYFEKKKELEEKKYHLIKQISDLKKQIDQ 474 +L+ L+ + + + + + L+++ ++ ELE+ + + +I Sbjct: 226 RKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKT 285 Query: 475 ESEKIKQKENQLKELTNN---------------------YSDRQNKIKELKEENQRLESS 513 + E + +L + + + ++L+E+N+ E+S Sbjct: 286 LEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEAS 345 Query: 514 INELN 518 L Sbjct: 346 RQSLR 350
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 69.3 bits (169), Expect = 3e-14 Identities = 66/398 (16%), Positives = 151/398 (37%), Gaps = 7/398 (1%) Query: 92 EELNILNNRKNNLNNQIDHLNSQIATIDEVSKKDKQKITLLLKQIEQVKTNLDNATNQKN 151 + L + R + + + L + + + +K K L +++ K L + Sbjct: 50 DTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLS 109 Query: 152 INIEKIQDLEIEVQNLKNKTNNLEKELLENKSKKENLIKLQQQTETESKKSKDMLDKLDK 211 KIQ+LE +L+ + +K + L + + L+ Sbjct: 110 EKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMN 169 Query: 212 QKTDLTIQKTELEKQIQTEISQNSKNDHQLSKLEFEWKDVLENIKNLENENNKNQDQITK 271 T + + LE + ++ ++ + L IK LE E + Sbjct: 170 FSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKAD 229 Query: 272 LDKTNRNYVRKLKELEKNKIDTESKLTQLNKQKDDLEKQIETRQNEIISKNNKAQIAQNS 331 L+K + E++ L ++ +LEK +E N + + K + + Sbjct: 230 LEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAE 289 Query: 332 LNEINSKIRKTDE-------SINDIKPKYDQELEKSKQLQEQIENVEQGIKLQEKEIKRL 384 + ++ + + ++ D E KQL+ + + +E+ K+ E + L Sbjct: 290 KAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSL 349 Query: 385 ILNKEEKQKEVDNLKTQNINVEKQISDWEKNNTDLKNQLNSLIQKTKELNKQKEKLDNDI 444 + + ++ L+ ++ +E+Q E + L+ L++ + K++ K E+ ++ + Sbjct: 350 RRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQVEKALEEANSKL 409 Query: 445 NTYFEKKKELEEKKYNLIKQISDLNKQIQIENKKINEK 482 + KELEE K K+ ++L +++ E K + EK Sbjct: 410 AALEKLNKELEESKKLTEKEKAELQAKLEAEAKALKEK 447 Score = 63.2 bits (153), Expect = 2e-12 Identities = 40/272 (14%), Positives = 91/272 (33%), Gaps = 7/272 (2%) Query: 251 VLENIKNLENENNKNQDQITKLDKTNRNYVRKLKELEKNKIDTESKLTQLNKQKDDLEKQ 310 V E E ENN + + + L N+ EL + + + KL + +K + + Sbjct: 55 VQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASK 114 Query: 311 IETRQNEIISKNNKAQIAQNSLNEINSKIRKTDESINDIKPKYDQELEKSKQLQEQIENV 370 I+ + + A N ++KI+ + + + + + Sbjct: 115 IQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTAD 174 Query: 371 EQGIKLQEKEIKRLILNKEEKQKEVDNLKTQNINVEKQISDWEKNNTDLKNQLNSLIQKT 430 IK E E L + E +K ++ + +I E L + L + Sbjct: 175 SAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKAL 234 Query: 431 KELNKQKEKLDNDINTYFEKKKELEEKKYNLIKQISDLNKQIQIENKKINEKQNQLEELT 490 + I T +K LE + ++L K ++ +++ L Sbjct: 235 EGAMNFSTADSAKIKTLEAEKAALEAR-------QAELEKALEGAMNFSTADSAKIKTLE 287 Query: 491 NKYSDKQNKIRELKEENLRLESSINELNSRYE 522 + + + + +L+ ++ L ++ L + Sbjct: 288 AEKAALEAEKADLEHQSQVLNANRQSLRRDLD 319 Score = 57.8 bits (139), Expect = 9e-11 Identities = 58/297 (19%), Positives = 110/297 (37%), Gaps = 2/297 (0%) Query: 240 QLSKLEFEWKDVLENIKNLENENNKNQDQITKLDKTNRNYVRKLKELEKNKIDTESKLTQ 299 + S L F K + ++ L E + ++++ K DK+ K++ELE K D E L Sbjct: 72 KNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEG 131 Query: 300 LNKQKDDLEKQIETRQNEIISKNNKAQIAQNSLNEINSKIRKTDESINDIKPKYDQELEK 359 +I+T + E + + + +L + I ++ + + Sbjct: 132 AMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEAR 191 Query: 360 SKQLQEQIENVEQGIKLQEKEIKRLILNKEEKQKEVDNLKTQNINVEKQISDWEKNNTDL 419 +L++ +E +IK L K +L+ + L Sbjct: 192 QAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTL 251 Query: 420 KNQLNSLIQKTKELNKQKEKLDNDINTYFEKKKELEEKKYNLIKQISDLNKQIQIENKKI 479 + + +L + EL K E N K K LE +K L + +DL Q Q+ N Sbjct: 252 EAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANR 311 Query: 480 NEKQNQLEELTNKYSDKQNKIRELKEENLRLESSINELNSRYEYL--KKKTVNAEYD 534 + L+ + + ++L+E+N E+S L + KK + AE+ Sbjct: 312 QSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQ 368 Score = 41.6 bits (97), Expect = 1e-05 Identities = 47/276 (17%), Positives = 111/276 (40%) Query: 37 KLEQLKNEISSLESNVKQYNEQISITELEKQQLLKEIKKIEQEIKDLKKQENSKKEELNI 96 LE N ++ + +K + + E + +L K ++ + + + E Sbjct: 163 ALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAA 222 Query: 97 LNNRKNNLNNQIDHLNSQIATIDEVSKKDKQKITLLLKQIEQVKTNLDNATNQKNINIEK 156 L RK +L ++ + K + + L + +++ L+ A N + K Sbjct: 223 LAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAK 282 Query: 157 IQDLEIEVQNLKNKTNNLEKELLENKSKKENLIKLQQQTETESKKSKDMLDKLDKQKTDL 216 I+ LE E L+ + +LE + + +++L + + K+ + KL++Q Sbjct: 283 IKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKIS 342 Query: 217 TIQKTELEKQIQTEISQNSKNDHQLSKLEFEWKDVLENIKNLENENNKNQDQITKLDKTN 276 + L + + + + + KLE + K + ++L + + +++ +++K Sbjct: 343 EASRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQVEKAL 402 Query: 277 RNYVRKLKELEKNKIDTESKLTQLNKQKDDLEKQIE 312 KL LEK + E K+K +L+ ++E Sbjct: 403 EEANSKLAALEKLNKELEESKKLTEKEKAELQAKLE 438 Score = 37.0 bits (85), Expect = 3e-04 Identities = 27/183 (14%), Positives = 73/183 (39%) Query: 355 QELEKSKQLQEQIENVEQGIKLQEKEIKRLILNKEEKQKEVDNLKTQNINVEKQISDWEK 414 + + +++QE+ + E + + L N + + D L + N ++++ +K Sbjct: 47 SQTDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDK 106 Query: 415 NNTDLKNQLNSLIQKTKELNKQKEKLDNDINTYFEKKKELEEKKYNLIKQISDLNKQIQI 474 + ++ +++ L + +L K E N K K LE +K L + +DL K ++ Sbjct: 107 SLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEG 166 Query: 475 ENKKINEKQNQLEELTNKYSDKQNKIRELKEENLRLESSINELNSRYEYLKKKTVNAEYD 534 +++ L + + + + EL++ + +++ + L+ + Sbjct: 167 AMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAAR 226 Query: 535 NNK 537 Sbjct: 227 KAD 229
>PF01540#Adhesin lipoprotein Length = 475 Score = 31.6 bits (71), Expect = 0.012 Identities = 53/235 (22%), Positives = 98/235 (41%), Gaps = 35/235 (14%) Query: 468 LKHQYLLEEIELFQTNKRRFAWQWKTIIFFSKVKQTIRVKTIIYIKTFIDCFNQFLTEKE 527 +K +LL E+E F+ + +W K + + +VK+ K + IK D + L E+ Sbjct: 189 IKKDFLLSELESFK--EFNTSWLEKIVSEWEEVKKAWS-KELAEIKAEDD---KKLAEEN 242 Query: 528 KAIKTKKEELLHISTSKQEFKINFKKEKQQIITDLKNKW-IDNYKLEIQKEKQQYKDLLL 586 + IK +ELL +S Q +F IT L+ K+ ID + +K+ +LL Sbjct: 243 QKIKEGAKELLKLSEKIQ----SFADTIALTITKLERKFQIDE---KFKKQLISTIELLN 295 Query: 587 HFKNELEVLNQLVAKNKKMS----QSITNDDKLRYQKLKSDFKKTQKQNHD--------- 633 E++ + K +S + +K+ S++++ +K Sbjct: 296 KKSVEVKTFATVNTIKKDFLLSELESFKEFNTSWLEKIVSEWEEVKKAWSKELAEIKAED 355 Query: 634 ---LAKAALKGSVGKDRLTKLHNKKMQALQDKINFYKEVSRFYPQKRFIIKTSLE 685 LA+ K G + L K+ N + L +N K ++ +K+F I S + Sbjct: 356 DKKLAEENQKIKNGVEELKKI-NNEAFELSKTVN--KTIAEL--EKKFKIDVSFK 405
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 32.0 bits (72), Expect = 7e-04 Identities = 24/130 (18%), Positives = 46/130 (35%), Gaps = 4/130 (3%) Query: 13 EGKPLTLTIKQNKEETKAQITELSEEAKSESPEDQAGNNGKSEELEEEIKNAEESWKEAD 72 + +T + E+P SE E +N+++ K + Sbjct: 993 DTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVE 1052 Query: 73 KKARAANEKYRKAHEKGRPYATKNEKAPDDILNEIDKTEEEVRKTQEDLKKAKDKLDGLK 132 K + A E + E + + + NE+ ++ E ++TQ + K+ K Sbjct: 1053 KNEQDATETTAQNREVAKEAKSNVKANTQT--NEVAQSGSETKETQT--TETKETATVEK 1108 Query: 133 KGKDKVEKVK 142 + K KVE K Sbjct: 1109 EEKAKVETEK 1118
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 29.3 bits (65), Expect = 0.047 Identities = 36/291 (12%), Positives = 91/291 (31%), Gaps = 13/291 (4%) Query: 303 IESLSIDIDMIKKALEDKNTINVKYQK--NSLDSSNENLDYNNTLSLNKTITNISNITNL 360 + I+ + +K D + N + + L N + S I L Sbjct: 59 ADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQEL 118 Query: 361 RDSTSTNYE-VEILNNNNNNNNLLNNNLEKTFLHIFDEIKNLKQQVNQ--NDLDTYQILL 417 + + +E N + ++ LE + +L++ + N + Sbjct: 119 EARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKI 178 Query: 418 DDLKAQINDVLQIKTDFLKKVDQLNQQNNTINNSEKNLKEILELKDFIKNQVNKIEQTLF 477 L+A+ + + + K ++ + + K L+ K + K + Sbjct: 179 KTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAM 238 Query: 478 IQSKNMNDPCNNKPKTHLSDSDLTDQYLDLKNQINILKTQINHNYSNQSDLVNNY----- 532 S + + L + +L+ + + + L Sbjct: 239 NFSTADSAKIKTLEAEK---AALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEA 295 Query: 533 ELNQLKSEISAYHQDLEQFKKELYFEKILDQKLENFDNKLKEKESVLELNR 583 E L+ + + + + +++L + ++LE KL+E+ + E +R Sbjct: 296 EKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASR 346
>SECA#SecA protein signature. Length = 901 Score = 31.0 bits (70), Expect = 0.013 Identities = 23/159 (14%), Positives = 55/159 (34%), Gaps = 20/159 (12%) Query: 100 NSDIKK-----DQLAKLNENLQTIKTKTNSFLQSINKSAKDYQLVKQTLDQSDNEQLNKK 154 N DI+K D + N+ + I ++ N L + S + + + + + + Sbjct: 638 NFDIRKQLLEYDDV--ANDQRRAIYSQRNELLDVSDVSETINSIREDVFKATIDAYIPPQ 695 Query: 155 ELEELKNEIKIIKNNVLLITLNIENVLNELKHLLKTINNIKETIFTKEQIQRAKVGLTNL 214 LEE+ + + + N ++ + L + E + + ++ Sbjct: 696 SLEEMWDIPGLQER-----LKNDFDLDLPIAEWLDKEPELHEETLRERILAQSIEVYQRK 750 Query: 215 EKQL-NELKNIIQKIEYTNVIKK-------ELDNLKQII 245 E+ + E+ +K + +D L+Q I Sbjct: 751 EEVVGAEMMRHFEKGVMLQTLDSLWKEHLAAMDYLRQGI 789
>SECA#SecA protein signature. Length = 901 Score = 31.0 bits (70), Expect = 0.003 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 6/52 (11%) Query: 129 YKALQNKVVKINGWGTLEEALEEL--EECKTRFEEYKDRLAKGQK-DEILAE 177 + ++ V IN +E +E+L EE K + E++ RL KG+ + ++ E Sbjct: 18 LRRMRKVVNIINA---MEPEMEKLSDEELKGKTAEFRARLEKGEVLENLIPE 66
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 84.4 bits (209), Expect = 3e-25 Identities = 34/86 (39%), Positives = 54/86 (62%) Query: 2 TKKELIEEIIINENISKVDAEKVVNRIFQTISKHLIDGKEVSVAGFGKFVISERASREGV 61 K++LI ++ ++K D+ V+ +F +S +L G++V + GFG F + ERA+R+G Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGR 62 Query: 62 NPSTGEKIVIPASRSARFKPAKQLKE 87 NP TGE+I I AS+ FK K LK+ Sbjct: 63 NPQTGEEIKIKASKVPAFKAGKALKD 88
>SECYTRNLCASE#Preprotein translocase SecY subunit signature. Length = 437 Score = 29.3 bits (66), Expect = 0.001 Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 11/47 (23%) Query: 31 FWEALD-------EEYKKSKTYIPGTRVVPDTYDGFEDDVQEYIKRL 70 F+ A+ + KK +IPG R T + + + R+ Sbjct: 332 FYVAISFNPEEVADNMKKYGGFIPGIRAGRPT----AEYLSYVLNRI 374
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 44.7 bits (105), Expect = 2e-06 Identities = 42/307 (13%), Positives = 104/307 (33%), Gaps = 12/307 (3%) Query: 496 RETQNQLNQSSADFKKQLEKITEQKNLLDTKIQKVETELTSKKQELEVQKNKLQNLEIEN 555 +E ++ + K + ++ L ++ EL++ K++L L + Sbjct: 56 QERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKI 115 Query: 556 QRLKTLNQKLERDLQSAEQRNSINQRNFESKEKDFNKIKSQLERDLVRLSNEIKQLQSSN 615 Q L+ LE+ L+ A ++ + + LE + L+ L+ + Sbjct: 116 QELEARKADLEKALEGAMNFSTADSAKIK-----------TLEAEKAALAARKADLEKAL 164 Query: 616 KSLSTKSEELESTKRRIENELETIKKESGAINKQLEEKVREIGENKQTISNYSQLLETRL 675 + S + + +E E ++ + K LE + + I Sbjct: 165 EGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALA 224 Query: 676 KEIEKINNELSELQASNSSLEKDKQKLNEEISSLKSESSSNKELIKTKEQELNKYKETSN 735 + L +++ + L E ++L++ + ++ ++ Sbjct: 225 ARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIK 284 Query: 736 KVKKQLEEKQNEYYDLLSKFQKQKQELDQLKQKL-ASTVDKSEINKLQSKIEELTQELDK 794 ++ + + E DL + Q L++ L AS K ++ K+EE + + Sbjct: 285 TLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEA 344 Query: 795 KKKELAA 801 ++ L Sbjct: 345 SRQSLRR 351 Score = 43.9 bits (103), Expect = 2e-06 Identities = 59/385 (15%), Positives = 142/385 (36%), Gaps = 16/385 (4%) Query: 435 TNNQLVATKTALKQSQNDLMKSNQEISNLKVQLESKKQEIQNLEQEHSTLLEKSNKLKVE 494 N + A + + L K + +++ + K + +L + L + +++L E Sbjct: 34 VVNTNEVSAVATRSQTDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEE 93 Query: 495 IRETQNQLNQSSADFKKQLEKITEQKNLLDTKIQKVETELTSKKQELEVQKNKLQNLEIE 554 + + +L ++ ++ KI E + + +E + K++ LE E Sbjct: 94 LSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTA----DSAKIKTLEAE 149 Query: 555 NQRLKTLNQKLERDLQ----------SAEQRNSINQRNFESKEKDFNKIKSQLERDLVRL 604 L LE+ L+ + + + E+++ + K Sbjct: 150 KAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTAD 209 Query: 605 SNEIKQLQSSNKSLSTKSEELESTKRRIENELETIKKESGAINKQLEEKVREIGENKQTI 664 S +IK L++ +L+ + +LE N + + + E ++ + Sbjct: 210 SAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKAL 269 Query: 665 SNYSQLLETRLKEIEKINNELSELQASNSSLEKDKQKLNEEISSLKSESSSNKELIKTKE 724 +I+ + E + L+A + LE Q LN SL+ + +++E K E Sbjct: 270 EGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLE 329 Query: 725 QELNKYKETSNKVKKQLEEKQNEYYDLLSKFQKQKQELDQLKQKLASTVDKSEINKLQSK 784 E K +E + + + + + ++ + E +L+++ + ++ L+ Sbjct: 330 AEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKIS--EASRQSLRRD 387 Query: 785 IEELTQELDKKKKELAAFKSSLATL 809 ++ + + +K L S LA L Sbjct: 388 LDASREAKKQVEKALEEANSKLAAL 412 Score = 41.2 bits (96), Expect = 2e-05 Identities = 49/402 (12%), Positives = 136/402 (33%), Gaps = 10/402 (2%) Query: 272 NQEAEYEEKLEELQVKSLSNLLNANRVKRALEVANNSDKTNKQELVKLNEQLQVQASEIK 331 N L + + + + E ++L+ + ++++ Sbjct: 67 NTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLE 126 Query: 332 QVKAELIKAKDEISSTKQQLVKVQTELKTSKTSETEIKDKLTKEIKKITQDLNSLKSDLG 391 + + S+ + L + L K + + + + +L+++ Sbjct: 127 KALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKA 186 Query: 392 LKNKKIKELSERELVFINQARTYENLNRSLTKIKHQLESKLTETNNQLVATKTALKQSQN 451 + EL + +N + ++L K L ++ + L Sbjct: 187 ALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSA 246 Query: 452 DLMKSNQEISNLKVQLESKKQEIQNLEQEHSTLLEKSNKLKVEIRETQNQL--------- 502 + E + L+ + ++ ++ + K L+ E + + Sbjct: 247 KIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQV 306 Query: 503 -NQSSADFKKQLEKITEQKNLLDTKIQKVETELTSKKQELEVQKNKLQNLEIENQRLKTL 561 N + ++ L+ E K L+ + QK+E + + + + L ++L+ Sbjct: 307 LNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAE 366 Query: 562 NQKLERDLQSAEQRNSINQRNFESKEKDFNKIKSQLERDLVRLSNEIKQLQSSNKSLSTK 621 +QKLE + +E +R+ ++ + +++ LE +L+ K + +S Sbjct: 367 HQKLEEQNKISEASRQSLRRDLDASREAKKQVEKALEEANSKLAALEKLNKELEESKKLT 426 Query: 622 SEELESTKRRIENELETIKKESGAINKQLEEKVREIGENKQT 663 +E + ++E E + +K++ ++L + + QT Sbjct: 427 EKEKAELQAKLEAEAKALKEKLAKQAEELAKLRAGKASDSQT 468 Score = 40.0 bits (93), Expect = 4e-05 Identities = 44/345 (12%), Positives = 120/345 (34%), Gaps = 3/345 (0%) Query: 428 LESKLTETNNQLVATKTALKQSQNDLMKSNQEISNLKVQLESKKQEIQNLEQEHSTLLEK 487 S E + + + +L ++ + + Sbjct: 93 ELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAA 152 Query: 488 SNKLKVEIRETQNQLNQSSADFKKQLEKITEQKNLLDTKIQKVETELTSKKQELEVQKNK 547 K ++ + S +++ + +K L+ + ++E L K Sbjct: 153 LAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAK 212 Query: 548 LQNLEIENQRLKTLNQKLERDLQSAEQRNSINQRNFESKEKDFNKIK---SQLERDLVRL 604 ++ LE E L LE+ L+ A ++ + ++ E + ++ ++LE+ L Sbjct: 213 IKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGA 272 Query: 605 SNEIKQLQSSNKSLSTKSEELESTKRRIENELETIKKESGAINKQLEEKVREIGENKQTI 664 N + K+L + LE+ K +E++ + + ++ + L+ + + Sbjct: 273 MNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEH 332 Query: 665 SNYSQLLETRLKEIEKINNELSELQASNSSLEKDKQKLNEEISSLKSESSSNKELIKTKE 724 + + + + +L + + LE + QKL E+ ++ S + + Sbjct: 333 QKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASR 392 Query: 725 QELNKYKETSNKVKKQLEEKQNEYYDLLSKFQKQKQELDQLKQKL 769 + + ++ + +L + +L + ++E +L+ KL Sbjct: 393 EAKKQVEKALEEANSKLAALEKLNKELEESKKLTEKEKAELQAKL 437 Score = 39.3 bits (91), Expect = 7e-05 Identities = 29/240 (12%), Positives = 77/240 (32%) Query: 133 NKQELVKLNEQLQVQASEIKQVKAELIKAKDEISSTKQQLVKAQTELKTSKASETEIKEQ 192 QEL L+ + + K L + +L+ + Sbjct: 114 KIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTA 173 Query: 193 LQIQVQKVSELLNKQKDLEVKLAEKQTSEKELNKKIDELVDSNKELTDELSKLKLEKLNY 252 +++ + + + +L + + + + + L+ K + Sbjct: 174 DSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKA 233 Query: 253 EAELNNANLALDELVNILENQEAEYEEKLEELQVKSLSNLLNANRVKRALEVANNSDKTN 312 N + A + LE ++A E + EL+ + + ++ Sbjct: 234 LEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAAL 293 Query: 313 KQELVKLNEQLQVQASEIKQVKAELIKAKDEISSTKQQLVKVQTELKTSKTSETEIKDKL 372 + E L Q QV + + ++ +L +++ + + K++ + K S+ S ++ L Sbjct: 294 EAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDL 353
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 34.8 bits (80), Expect = 2e-04 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 4/72 (5%) Query: 5 IALFGGSFDPIHTDHVNIIKTCYEKLKFDEVWLIPAYLNPFKTKQNSSIVDRLNMLEIIK 64 A++ GSFDPI H++II+ FD+V++ NP K + S+ +RL + Sbjct: 2 NAIYPGSFDPITFGHLDIIER--GCRLFDQVYVAVL-RNPNK-QPMFSVQERLEQIAKAI 57 Query: 65 NKFSYIKIYDYE 76 ++ +E Sbjct: 58 AHLPNAQVDSFE 69
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 28.0 bits (62), Expect = 0.025 Identities = 11/33 (33%), Positives = 16/33 (48%) Query: 34 AEKVENKEKAKPSEEPKKEEKKEEKENEKDKEL 66 A V K K KP +PK +K +E+ K + Sbjct: 85 APVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPV 117
>PF03309#Bvg accessory factor Length = 271 Score = 29.0 bits (65), Expect = 0.019 Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 16/63 (25%) Query: 8 LSIDIGGTSIKYGIFNENLSPLFINS---ITTIPIK--DEL-----------LKQIIDII 51 L+ID+ T G+ + + + I T P DEL +++ Sbjct: 3 LAIDVRNTHTVVGLISGSGDHAKVVQQWRIRTEPEVTADELALTIDGLIGDDAERLTGAS 62 Query: 52 ISS 54 S Sbjct: 63 GLS 65
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 29.9 bits (67), Expect = 0.035 Identities = 24/111 (21%), Positives = 47/111 (42%), Gaps = 14/111 (12%) Query: 366 MSTISSSLHSAATCIVEDILIRIKPNLKDKQKMYWAK-SLILGIGLLGTIAALVLIVTKA 424 +ST + L +A + + D LI+ + + + AK S+ L L+ T+A+L Sbjct: 146 LSTFQNFLGTALSSMKIDELIKKQKSGGNVSSSELAKASIELINQLVDTVASLN------ 199 Query: 425 DNLLDLFAAIIGLFGTSVTVIYLLGIFTKRT------SNTGAILGAISSFI 469 N ++ F+ + G+ ++ L + N GA L +S + Sbjct: 200 -NNVNSFSQQLNTLGSVLSNTKHLNGVGNKLQNLPNLDNIGAGLDTVSGIL 249
>TYPE3IMRPROT#Type III secretion system inner membrane R protein family signature. Length = 261 Score = 27.0 bits (60), Expect = 0.011 Identities = 8/34 (23%), Positives = 12/34 (35%) Query: 39 FTNAGSIIYRQRGTKIHPGLNVGRGGDDTLFALI 72 AG II Q G ++ + + A I Sbjct: 95 VRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 29.0 bits (65), Expect = 0.016 Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 4/52 (7%) Query: 6 KTVLLKLSGEALKGDAEVYD----KKCLDNIASQIVHLAKNGLKLAIVIGGG 53 K V++ L G AL+ + + A QI + G ++ I G G Sbjct: 3 KRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNG 54
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 80.9 bits (200), Expect = 7e-24 Identities = 33/86 (38%), Positives = 55/86 (63%) Query: 2 NKKELISEISLETEVSKKVVESVVNKTFELITKTLVNNKEILIPDFGKFVVLQKDSRKGI 61 NK++LI++++ TE++KK + V+ F ++ L +++ + FG F V ++ +RKG Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGR 62 Query: 62 NPKTGEQIIIPASKTAKFKPSKKLKE 87 NP+TGE+I I ASK FK K LK+ Sbjct: 63 NPQTGEEIKIKASKVPAFKAGKALKD 88
>cloacin#Cloacin signature. Length = 551 Score = 36.2 bits (83), Expect = 0.001 Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 1/79 (1%) Query: 1589 GNGSRTDNGNSTEDSNNRNNGENPQGDENKPGNNSGDNSSRNPDSRTPGSNSNRDDSSSN 1648 G R N + S N N G G + SG +S NP GS + S + Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 1649 GSGSENGSRSGNENGTSSN 1667 G+G NG+ SG +GT N Sbjct: 63 GNGGGNGN-SGGGSGTGGN 80
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 44.7 bits (105), Expect = 1e-06 Identities = 60/390 (15%), Positives = 150/390 (38%), Gaps = 1/390 (0%) Query: 130 DKTNKQELVKLNEQLQVQASEIKQVQDELIKAKDEISSTKKQLVKTQTELKTSKASETEI 189 + T K + L+ + ++ +EL AK+++ K L + ++++ +A + ++ Sbjct: 66 NNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADL 125 Query: 190 KEQLQIQVQKVNELLNKQKELEVRLDEKQTSEKELNKRINELVESNKELTDELSKLKLEN 249 ++ L+ + K K LE + +L K + + + + ++ L+ E Sbjct: 126 EKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEK 185 Query: 250 FNNKTELNNANLALDELVNILEIQELEYEEKLEELQVKSLSNLLNANRAKRALEVTNNSD 309 + AL+ +N + LE + + + +A + +D Sbjct: 186 AALEARQAELEKALEGAMNFSTADS-AKIKTLEAEKAALAARKADLEKALEGAMNFSTAD 244 Query: 310 KTNKAELVKLNEQLQVQASEIKQVQDELIKAKDEISSTKKQLVKTQTKLKTSKASETEIK 369 L L+ + +E+++ + + S+ K L + L+ KA Sbjct: 245 SAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQS 304 Query: 370 DKLTKEIKKITQDLTSLKSDLGLKNKKIKELSERELVFINQARTYENLNHSLTKIKHQLE 429 L + + +DL + + + ++L E+ + ++ + + K QLE Sbjct: 305 QVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLE 364 Query: 430 SKLTETNNQLVATKNALKQSQDNLMKSNQEISNLKVQLESKKQEIQNLEQEHSTLIEKSN 489 ++ + Q ++ + + + +L S + ++ LE ++ LE+ + L E Sbjct: 365 AEHQKLEEQNKISEASRQSLRRDLDASREAKKQVEKALEEANSKLAALEKLNKELEESKK 424 Query: 490 KLELEISSTKKQLNQSSADFKKQLEKITEQ 519 E E + + +L + K++L K E+ Sbjct: 425 LTEKEKAELQAKLEAEAKALKEKLAKQAEE 454 Score = 43.9 bits (103), Expect = 2e-06 Identities = 64/396 (16%), Positives = 141/396 (35%), Gaps = 4/396 (1%) Query: 196 QVQKVNELLNKQKELEVRLDEKQTSEKELNKRINELVESNKELTDELSKLKLENFNNKTE 255 Q + ++ + + E+ + + +L+ L + N ELT+ELS K + N Sbjct: 48 QTDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKS 107 Query: 256 LNNANLALDELVNILEIQELEYEEKLEELQVKSLSNLLNANRAKRALEVTNNSDKTNKAE 315 L+ + EL E E + + + K AL + Sbjct: 108 LSEKASKIQELEARKADLEKALEGAMNFST-ADSAKIKTLEAEKAALAARKADLEKALEG 166 Query: 316 LVKLNEQLQVQASEIKQVQDELIKAKDEISSTKKQLVKTQTKLKTSKASETEIKDKLTKE 375 + + + ++ + L + E+ + + T + K L Sbjct: 167 AMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAAR 226 Query: 376 IKKITQDLTSLKSDLGLKNKKIKELSERELVFINQARTYENLNHSLTKIKHQLESKLTET 435 + + L + + KIK L + + E +K+ Sbjct: 227 KADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTL 286 Query: 436 NNQLVATKNALKQSQDNLMKSNQEISNLKVQLESKKQEIQNLEQEHSTLIEKSNKLELEI 495 + A + + N +L+ L++ ++ + LE EH L E++ E Sbjct: 287 EAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASR 346 Query: 496 SSTKKQLNQSSADFKK---QLEKITEQKNLLDIKIQKVETELTSKKQELEVQKNQLQNLK 552 S ++ L+ S K+ + +K+ EQ + + Q + +L + ++ + + L+ Sbjct: 347 QSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQVEKALEEAN 406 Query: 553 TENQWLKTLNQKLEKDLKAAEQRNSTNQRNFESKEK 588 ++ L+ LN++LE+ K E+ + Q E++ K Sbjct: 407 SKLAALEKLNKELEESKKLTEKEKAELQAKLEAEAK 442 Score = 40.4 bits (94), Expect = 3e-05 Identities = 38/299 (12%), Positives = 96/299 (32%), Gaps = 13/299 (4%) Query: 430 SKLTETNNQLVATKNALKQSQDNLMKSNQEISNLKVQLESKKQEIQNLEQEHSTLIEKSN 489 K+ E ++ N LK +L +N+ + + +L + + +++ + + Sbjct: 53 EKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKA 112 Query: 490 KLELEISSTKKQLNQSSADFKKQLEKITEQKNLLDIKIQKVETELTSKKQELEVQKNQLQ 549 E+ + K L ++ + + L+ + + ++ LE N Sbjct: 113 SKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFST 172 Query: 550 NLKTENQWLKTLNQKLEKDLKAAEQRNSTNQRNFESKEKDFNKIKSQLESKKRRLEFQLS 609 + + L+ LE E+ + ++++ + R L Sbjct: 173 ADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKA-DLE 231 Query: 610 LAKAENIYTSQTLKQLQSQISKQHISLETKEKELKEKLIKEFQANKEYLDKKYKQSEEEI 669 A + S + + +LE ++ EL++ E +I Sbjct: 232 KALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKA--------LEGAMNFSTADSAKI 283 Query: 670 FKLSKFLENKNSSLTKSKIELENHLIRLSTEIKQLKSTEEFLNQKISSLTSQIQKLEEE 728 L + + + + L+ + L+ + + L ++ QKLEE+ Sbjct: 284 KTLEAEKAALEAEKADLEHQSQV----LNANRQSLRRDLDASREAKKQLEAEHQKLEEQ 338 Score = 32.0 bits (72), Expect = 0.011 Identities = 28/264 (10%), Positives = 88/264 (33%), Gaps = 2/264 (0%) Query: 428 LESKLTETNNQLVATKNALKQSQDNLMKSNQEISNLKVQLESKKQEIQNLEQEHSTLIEK 487 S E + + + L ++ + + Sbjct: 93 ELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAA 152 Query: 488 SNKLELEISSTKKQLNQSSADFKKQLEKITEQKNLLDIKIQKVETELTSKKQELEVQKNQ 547 + ++ + S +++ + +K L+ + ++E L + Sbjct: 153 LAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAK 212 Query: 548 LQNLKTENQWLKTLNQKLEKDLKAAEQRNSTNQRNFESKEKDFNKIKSQLESKKRRLEFQ 607 ++ L+ E L LEK L+ A ++ + ++ E + ++++ ++ LE Sbjct: 213 IKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGA 272 Query: 608 LSLAKAENIYTSQTLKQLQSQISKQHISLETKEKELKEKLIKEFQANKEYLDKKYKQSEE 667 ++ + A++ + + + + + ++ + + + + + KQ E Sbjct: 273 MNFSTADSAKIKTLEAEKAAL--EAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEA 330 Query: 668 EIFKLSKFLENKNSSLTKSKIELE 691 E KL + + +S + +L+ Sbjct: 331 EHQKLEEQNKISEASRQSLRRDLD 354
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 34.8 bits (80), Expect = 5e-04 Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 2/70 (2%) Query: 98 NEVIKEIDREVLEWLITDLFKEEILKKHKADNLDELIEKIKEKFRTNITNKEIMKILGLP 157 ++ ++E R+ L + + A+ LI R N + +LGL Sbjct: 405 SQAVEENMRQYFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQI--KAADLLGLN 462 Query: 158 KSTFYYKLKK 167 ++T K+++ Sbjct: 463 RNTLRKKIRE 472
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 35.6 bits (82), Expect = 4e-04 Identities = 12/70 (17%), Positives = 27/70 (38%), Gaps = 2/70 (2%) Query: 98 NEVIKEIDREVLEWLITDLFKEEILKKHKADNLDELIEKIKEKFGTNITNKEIMKILGLP 157 ++ ++E R+ L + + A+ LI N + +LGL Sbjct: 405 SQAVEENMRQYFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQI--KAADLLGLN 462 Query: 158 KSTFYYKLKK 167 ++T K+++ Sbjct: 463 RNTLRKKIRE 472
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 30.1 bits (67), Expect = 0.026 Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 8/76 (10%) Query: 342 LTEGS-QPNSSSPSSPSTPAKPNKPLNGTTSNVDDPTSSSPTVKPDINSETSDVQPPV-- 398 LT GS + ++ P +PA+ P N N + T +P PD+N D P Sbjct: 315 LTPGSAEAPNAQPLPEVSPAE--NPANNPAPNENPGTRPNPEPDPDLN---PDANPDTDG 369 Query: 399 TPPTKPEKPELPNADN 414 P T+P+ P +P+ N Sbjct: 370 QPGTRPDSPAVPDRPN 385
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 48.1 bits (114), Expect = 1e-07 Identities = 53/360 (14%), Positives = 132/360 (36%) Query: 113 KQLEELKKSELTQKNQIKKLETTISDAEKQIQLNEKELVAKQKEYDELVAKLKELEIYNT 172 + +L + K+ +L +S+A+++++ N+K L K + EL A+ +LE Sbjct: 71 LKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALE 130 Query: 173 NKKEQLNQRETQIANWTAEYEAISSKVKEKQDQLNSQKERLALLNRIQKEYDQSVELKDK 232 +I AE A++++ + + L + K + + Sbjct: 131 GAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEA 190 Query: 233 LTEDINKNKKELEEYKKHEKEISEKISKLEKQLEEQLRKEPSLKDSFRKKQDEWNKLKED 292 ++ K + + + + + + L + + + + Sbjct: 191 RQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKT 250 Query: 293 RNKLKETIKRQKASYNETILKLNSELNDLVSQKDKLEDRIKDRNEAETKLNEQIKNLKTN 352 K ++ ++A + + + ++ LE + L Q + L N Sbjct: 251 LEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNAN 310 Query: 353 IETIKNNTQEKETSIKEISAELKKLEGKKESTIKTIKEISLKIPTLQQKELEKTREIAKL 412 ++++ + + K++ AE +KLE + + + + + + + ++ + + E KL Sbjct: 311 RQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKL 370 Query: 413 KKDIKANKIRIFSLEVGVIDIQNQISEVENELHQKQLVIFGYTKEIKELNKVKAEFEKVK 472 ++ K ++ SL + + +VE L + + K KEL + K EK K Sbjct: 371 EEQNKISEASRQSLRRDLDASREAKKQVEKALEEANSKLAALEKLNKELEESKKLTEKEK 430 Score = 42.4 bits (99), Expect = 9e-06 Identities = 69/421 (16%), Positives = 150/421 (35%), Gaps = 10/421 (2%) Query: 245 EEYKKHEKEISEKISKLEKQLEEQLRKEPSLKDSFRKKQDEWNKLKEDRNKLKETIKRQK 304 + + +E ++K L+ + + + DE + + + + Sbjct: 49 TDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSL 108 Query: 305 ASYNETILKLNSELNDLVSQKDKLEDRIKDRNEAETKLNEQIKNLKTNIETIKNNTQEKE 364 + I +L + DL + + + L + L ++ + Sbjct: 109 SEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAM 168 Query: 365 TSIKEISAELKKLEGKKESTIKTIKEISLKIPTLQQKELEKTREIAKLKKDIKANKIRIF 424 SA++K LE +K + E+ + + +I L+ + A R Sbjct: 169 NFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKA 228 Query: 425 SLEVGVIDIQNQISEVENELHQKQLVIFGYTKEIKELNKVKAEFEKVKKTFDDEINKLKQ 484 LE + N + ++ + EL K +I L+ Sbjct: 229 DLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEA 288 Query: 485 EIQNKEKE---ILSDKSKSEENTRLNKEQIENSKKAIERILAEKKKIEDEIKDIDSKKEK 541 E E E + N + + ++ S++A +++ AE +K+E++ K ++ ++ Sbjct: 289 EKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQS 348 Query: 542 IINDAKKEKLTLEARKKELVDNKAELDEKYTELLSKITNEEKIIREKTEEKSNLSSELDK 601 + D KK+L +L+E+ + + + + E K + L++ Sbjct: 349 LRRDLD----ASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQVEKALEE 404 Query: 602 NNREISDAKKDLDSLNEIIGTLKETNKNKVKEKEKVEGELRVLKEKENSLSESLNKVNRQ 661 N +++ +K L E + K T K K + + K+E E + LKEK +E L K+ Sbjct: 405 ANSKLAALEKLNKELEE---SKKLTEKEKAELQAKLEAEAKALKEKLAKQAEELAKLRAG 461 Query: 662 K 662 K Sbjct: 462 K 462 Score = 38.9 bits (90), Expect = 1e-04 Identities = 44/311 (14%), Positives = 98/311 (31%) Query: 73 IKDIKEQVEKIKKQVLEKQDQIKANKTKRDVVIKQLQPIAKQLEELKKSELTQKNQIKKL 132 +K + + +D + ++L+ K L E + + L Sbjct: 66 NNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADL 125 Query: 133 ETTISDAEKQIQLNEKELVAKQKEYDELVAKLKELEIYNTNKKEQLNQRETQIANWTAEY 192 E + A + ++ + E L A+ +LE +I AE Sbjct: 126 EKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEK 185 Query: 193 EAISSKVKEKQDQLNSQKERLALLNRIQKEYDQSVELKDKLTEDINKNKKELEEYKKHEK 252 A+ ++ E + L + K + D+ K + + + Sbjct: 186 AALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADS 245 Query: 253 EISEKISKLEKQLEEQLRKEPSLKDSFRKKQDEWNKLKEDRNKLKETIKRQKASYNETIL 312 + + + LE + + + + + K ++ +KA Sbjct: 246 AKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQ 305 Query: 313 KLNSELNDLVSQKDKLEDRIKDRNEAETKLNEQIKNLKTNIETIKNNTQEKETSIKEISA 372 LN+ L D + K KL EQ K + + ++++ + + K++ A Sbjct: 306 VLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEA 365 Query: 373 ELKKLEGKKES 383 E +KLE + + Sbjct: 366 EHQKLEEQNKI 376 Score = 38.5 bits (89), Expect = 2e-04 Identities = 56/338 (16%), Positives = 121/338 (35%), Gaps = 15/338 (4%) Query: 341 KLNEQIKNLKTNIETIKNNTQEKETSIKEISAELKKLEGKKESTIKTIKEISLKIPTLQQ 400 K+ E+ + T+K + + K + +L + + + +++ + Sbjct: 54 KVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKAS 113 Query: 401 KELEKTREIAKLKKDIKANKIRIFSLEVGVIDIQNQISEVENELHQKQLVIFGYTKEIKE 460 K E A L+K ++ + + ++ + + + + + G Sbjct: 114 KIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTA 173 Query: 461 LNKVKAEFEKVKKTFDDEINKLKQEIQNKEKEILSDKSKSEENTRLNKEQIENSKKAIER 520 + E K + +L++ ++ +D +K + +E K A+ Sbjct: 174 DSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAK--------IKTLEAEKAALAA 225 Query: 521 ILAEKKKIEDEIKDIDSKKEKIINDAKKEKLTLEARKKELVDNKAELDEKYTELLSKITN 580 A+ +K + + + I + EK LEAR+ EL T +KI Sbjct: 226 RKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKT 285 Query: 581 EEKIIREKTEEKSNLSSELDKNNREISDAKKDLDSLNEIIGTLKETNKNKVKEKEKVEGE 640 E EK++L + N ++DLD+ E L+ E +K+E + Sbjct: 286 LEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEA-------EHQKLEEQ 338 Query: 641 LRVLKEKENSLSESLNKVNRQKRDLERKLVKTKEDVEI 678 ++ + SL L+ K+ LE + K +E +I Sbjct: 339 NKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKI 376 Score = 34.3 bits (78), Expect = 0.003 Identities = 42/286 (14%), Positives = 102/286 (35%), Gaps = 3/286 (1%) Query: 537 SKKEKIINDAKKEKLTLEARKKELVDNKAELDEKYTELLSKITNEEKIIREKTEEKSNLS 596 K ++ + + E TL+ + +L N L + EL +++N ++ +R+ + S + Sbjct: 53 EKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKA 112 Query: 597 SELDKNNREISDAKKDLDSLNEIIGTLKETNKNKVKEKEKVEGELRVLKEKENSLSESLN 656 S++ + +D +K L+ K EK + L++ Sbjct: 113 SKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFST 172 Query: 657 KVNRQKRDLERKLVKTKEDVEIINHKIEFG---SETNRILNVKLEDSLKEKENEVNEFLM 713 + + + LE + + + +E S + LE + Sbjct: 173 ADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEK 232 Query: 714 HIDDVNKNNENSIKQVSAQIEELKKLEISLNEAKTKAQKAQLQVVSKLKELEIVDNKNKE 773 ++ + ++ E LE E + + A + +++ ++ + Sbjct: 233 ALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAA 292 Query: 774 LLEQLGAKNQEEQDISNYVLQLERDINYLTSKKSQLQSEVKILKEK 819 L + + Q ++ L RD++ K QL++E + L+E+ Sbjct: 293 LEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQ 338
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 43.9 bits (103), Expect = 3e-06 Identities = 57/336 (16%), Positives = 131/336 (38%), Gaps = 11/336 (3%) Query: 330 EVNKLRKKAAELRKKLSPLRSEKIYLNLQKNKLNNSYEKLVKQHSDLKTRLDEIKSLISQ 389 + K++++A + + + L+ + L+ L + ++L ++ S+ K +L + +S+ Sbjct: 51 TLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSE 110 Query: 390 LESKEKEHKRLESEINKKESEISTLKDQQSSIQAEIKKWQSKISDKQTVLENKKKEVKGF 449 SK +E + ++++ K S+ ++ ++ ++ ++ LE + F Sbjct: 111 KASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNF 170 Query: 450 EEKLSKKKDEIKAIEQELDSKEDEFNKLDSEVVRLQDQLKEKEATLAKVKKEGIESTSKL 509 S K ++A + L++++ E K + K TL K Sbjct: 171 STADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEK---------- 220 Query: 510 EEEIRNLNTELVNANKEKEAKERINKQHLDTLNREKVKAQAEKAQLENEISNKNKEINDT 569 + +L A + + + TL EK +A +A+LE + Sbjct: 221 -AALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTAD 279 Query: 570 NKLINDQNQKLEENKNKSLSLTNEIENTKKEIKKAKDTLAADETKKQDLKTEEDNLNKSI 629 + I + + + L ++ + + + L A K+ L+ E L + Sbjct: 280 SAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQN 339 Query: 630 KNAEEEKQKIEVEKRTTNEKIGSIGAQVQKAEEENK 665 K +E +Q + + + E + A+ QK EE+NK Sbjct: 340 KISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNK 375 Score = 41.6 bits (97), Expect = 1e-05 Identities = 57/373 (15%), Positives = 131/373 (35%), Gaps = 3/373 (0%) Query: 139 ELEKKQWEVKLARSNKLLDSRKQEVQSLKNKLEQAQIKKYDLNRKYKEALEKLKDLEKKI 198 + + L + + D + E +LK K L E E+L + ++K+ Sbjct: 42 AVATRSQTDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKL 101 Query: 199 AEGKASIPKIDKDIQRATKLADSREKEVKDLKTKKEELRKEVIKLYTEKEKTDAELRRLK 258 + S+ + IQ EK ++ ++ L EK A L+ Sbjct: 102 RKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLE 161 Query: 259 ANKQKSLELETKVNALEISNRKLETQIKEVEDQISILNRNNKGLSKEFEHYSKEPIAKIK 318 + ++ T +A + + ++ + ++ S K A+ Sbjct: 162 KALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKA 221 Query: 319 ELSEKIAPKKQEVNKLRKKAAELRKKLSPLRSEKIYLNLQKNKLNNSYEKLVKQHSDLKT 378 L+ + A ++ + + K+ L +EK L ++ +L + E + Sbjct: 222 ALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNF---STA 278 Query: 379 RLDEIKSLISQLESKEKEHKRLESEINKKESEISTLKDQQSSIQAEIKKWQSKISDKQTV 438 +IK+L ++ + E E LE + + +L+ + + K+ +++ + Sbjct: 279 DSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQ 338 Query: 439 LENKKKEVKGFEEKLSKKKDEIKAIEQELDSKEDEFNKLDSEVVRLQDQLKEKEATLAKV 498 + + + L ++ K +E E E++ ++ L+ L +V Sbjct: 339 NKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQV 398 Query: 499 KKEGIESTSKLEE 511 +K E+ SKL Sbjct: 399 EKALEEANSKLAA 411 Score = 37.4 bits (86), Expect = 3e-04 Identities = 83/438 (18%), Positives = 151/438 (34%), Gaps = 23/438 (5%) Query: 391 ESKEKEHKRLESEINKKESEISTLKDQQSSIQAEIKKWQSKISDKQTVLENKKKEVKGFE 450 S+ ++++ +K E E +TLK + S + K + + L N K++++ + Sbjct: 46 RSQTDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKND 105 Query: 451 EKLSKKKDEIKAIEQELDSKEDEFNKLDSEVVRLQDQLKEKEATLAKVKKEGIESTSKLE 510 + LS+K +I+ +E E + ++K EA A + + LE Sbjct: 106 KSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALE 165 Query: 511 EEIRNLNTELVNANKEKEAKERINKQHLDTLNREKVKAQAEKAQLENEISNKNKEINDTN 570 N +T K EA++ + L + A +I E Sbjct: 166 G-AMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALA 224 Query: 571 KLINDQNQKLEENKNKSLSLTNEIENTKKEIKKAKDTLAADETKKQDLKTEEDNLNKSIK 630 D + LE N S + + +I+ + E + A E + + IK Sbjct: 225 ARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIK 284 Query: 631 NAEEEKQKIEVEKRTTNEKIGSIGAQVQKAEEENKNKENLIKDEENKIKGLEVELNKVLA 690 E EK +E EK + + A Q + K E + + LE + Sbjct: 285 TLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKI--- 341 Query: 691 NYKAIWEEFYTKNKEKFLESDQKLSELNNHYFDLYESYNANSDKLSNLKKVENYLKQNTF 750 S+ L E+ + L++ + + Sbjct: 342 -------------------SEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQ 382 Query: 751 NFEGDKDRLEEKVKSISKEIQNKESFSSVIEGEFTEIEKEIAQHIKNKKELEAKKEELIR 810 + D D E K + K ++ S + +E E+E+ K K EL+AK E + Sbjct: 383 SLRRDLDASREAKKQVEKALEEANSKLAALEKLNKELEESKKLTEKEKAELQAKLEAEAK 442 Query: 811 DIKELESDKANERTKLRR 828 +KE + +A E KLR Sbjct: 443 ALKEKLAKQAEELAKLRA 460 Score = 33.1 bits (75), Expect = 0.007 Identities = 50/253 (19%), Positives = 94/253 (37%), Gaps = 14/253 (5%) Query: 35 DERKTFEQELKDLSVELDNYKKNLYSTDKKFKHLTAEDILNDGTIRDLNKELAYINRQIE 94 K + +L+ EL N K+ L DK ++ + DL K L Sbjct: 78 FNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFST 137 Query: 95 ANNQEIAAKDEQIKKLTQEISDSKKAIEQINKDLPNNKKKADQLELEKKQWEVKLARSNK 154 A++ +I + + L +D +KA+E + K LE EK E + A K Sbjct: 138 ADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEK 197 Query: 155 LLDSRKQ--------------EVQSLKNKLEQAQIKKYDLNRKYKEALEKLKDLEKKIAE 200 L+ E +L + + K+K LE + A Sbjct: 198 ALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAA 257 Query: 201 GKASIPKIDKDIQRATKLADSREKEVKDLKTKKEELRKEVIKLYTEKEKTDAELRRLKAN 260 +A +++K ++ A + + ++K L+ +K L E L + + +A + L+ + Sbjct: 258 LEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRD 317 Query: 261 KQKSLELETKVNA 273 S E + ++ A Sbjct: 318 LDASREAKKQLEA 330 Score = 32.0 bits (72), Expect = 0.015 Identities = 58/409 (14%), Positives = 141/409 (34%), Gaps = 6/409 (1%) Query: 60 STDKKFKHLTAEDILNDGTIRDLNKELAYINRQIEANNQEIAAKDEQIKKLTQEISDSKK 119 +T++ T +++ + N ++ N +++ ++ +K E+++ Sbjct: 36 NTNEVSAVATRSQTDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELS 95 Query: 120 AIEQINKDLPNNKKKADQLELEKKQWEVKLARSNKLLDSRKQEVQSLKNKLEQAQIKKYD 179 ++ + + + E + + L ++ + + + LE + Sbjct: 96 NAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAA 155 Query: 180 LNRKYKEALEKLKDLEKKIAEGKASIPKIDKDIQRATKLADSREKEVKDLKTKKEELRKE 239 ++ALE + + A I ++ + EK ++ + Sbjct: 156 RKADLEKALEGAMNFSTADS---AKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAK 212 Query: 240 VIKLYTEKEKTDAELRRLKANKQKSLELETKVNALEISNRKLETQIKEVEDQISILNRNN 299 + L EK A L+ + ++ T +A + + ++ + ++ Sbjct: 213 IKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGA 272 Query: 300 KGLSKEFEHYSKEPIAKIKELSEKIAPKKQEVNKLRKKAAELRKKLSPLRSEKIYLNLQK 359 S K A+ L + A + + L LR+ L R K L + Sbjct: 273 MNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEH 332 Query: 360 NKLNNSYEKLVKQHSDLKTRLDEIKSLISQLESKEKEHKRLESEINKKESEISTLKDQQS 419 KL + L+ LD + QLE+ EH++LE + E+ +L+ Sbjct: 333 QKLEEQNKISEASRQSLRRDLDASREAKKQLEA---EHQKLEEQNKISEASRQSLRRDLD 389 Query: 420 SIQAEIKKWQSKISDKQTVLENKKKEVKGFEEKLSKKKDEIKAIEQELD 468 + + K+ + + + + L +K K EE + E ++ +L+ Sbjct: 390 ASREAKKQVEKALEEANSKLAALEKLNKELEESKKLTEKEKAELQAKLE 438 Score = 30.8 bits (69), Expect = 0.032 Identities = 64/373 (17%), Positives = 124/373 (33%), Gaps = 1/373 (0%) Query: 590 LTNEIENTKKEIKKAKDTLAADETKKQDLKTEEDNLNKSIKNAEEEKQKIEVEKRTTNEK 649 + + + E K + + LK D L + + NA+E+ +K + K Sbjct: 55 VQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASK 114 Query: 650 IGSIGAQVQKAEEENKNKENLIKDEENKIKGLEVELNKVLANYKAIWEEFYTKNKEKFLE 709 I + A+ E+ + N + KIK LE E LA KA E+ Sbjct: 115 IQELEARKADLEKALEGAMNFSTADSAKIKTLEAE-KAALAARKADLEKALEGAMNFSTA 173 Query: 710 SDQKLSELNNHYFDLYESYNANSDKLSNLKKVENYLKQNTFNFEGDKDRLEEKVKSISKE 769 K+ L L L E +K L + + K Sbjct: 174 DSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKA 233 Query: 770 IQNKESFSSVIEGEFTEIEKEIAQHIKNKKELEAKKEELIRDIKELESDKANERTKLRRN 829 ++ +FS+ + +E E A + ELE E + + + Sbjct: 234 LEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAAL 293 Query: 830 RRDLVYANSSSKETIDMIAKIEDNIDKLTSELNAAKSNVEISNIVLLKALAENQELERKQ 889 + S+ + ++D ++ + + A Q L R Sbjct: 294 EAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDL 353 Query: 890 QDLLDWQTASKKQYEQLLESNKSLKEKSESFNKQKQKIKEQSKELFEHLTQSNKKLSEFD 949 + + + ++++L E NK + +S + +E K++ + L ++N KL+ + Sbjct: 354 DASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQVEKALEEANSKLAALE 413 Query: 950 ETYKRLKVDFKET 962 + K L+ K T Sbjct: 414 KLNKELEESKKLT 426
>PF03309#Bvg accessory factor Length = 271 Score = 28.6 bits (64), Expect = 0.025 Identities = 9/33 (27%), Positives = 12/33 (36%) Query: 1 MVLVFDVGGMSTKIALIDSKTDQIIIKDQIVYS 33 M+L DV T + LI D + Q Sbjct: 1 MLLAIDVRNTHTVVGLISGSGDHAKVVQQWRIR 33
>PF05844#YopD protein Length = 295 Score = 29.6 bits (66), Expect = 0.036 Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 8/78 (10%) Query: 3 NDNKTIVSSNKDQLEGLKN---IVAITACAAGV---AHTYMAADSISKAAKALNINVHVE 56 N+N+ I+ + K Q++ +++ ++ A AGV A + + K KA I+ Sbjct: 97 NENQAIIHAQKAQVDEMRSGATLMIAMAVIAGVGALASAVVGSLGALKNGKA--ISQEKT 154 Query: 57 TQGTIGAENVISDQQLQQ 74 Q I N + D ++Q Sbjct: 155 LQKNIDGRNELIDAKMQA 172
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 67.2 bits (164), Expect = 7e-17 Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 1/67 (1%) Query: 34 NQQALDQITLAQTQEYIDQNQFAPGSMLLKVQAVISLVKKTNGKPAYIGSLEQADKVLQN 93 +Q L ++ + + ++Y ++ F GSM KV A I ++ G+ A I LE+A + L+ Sbjct: 248 KEQWLREVKVEELRKYYEEGHFKAGSMGPKVLAAIRFIEWG-GERAIIAHLEKAVEALEG 306 Query: 94 LSGTKFV 100 +GT+ + Sbjct: 307 KTGTQVL 313
>PF01540#Adhesin lipoprotein Length = 475 Score = 35.9 bits (82), Expect = 2e-04 Identities = 45/189 (23%), Positives = 83/189 (43%), Gaps = 18/189 (9%) Query: 78 KIKPSIPKLKEVYKEALQVVEEVKRETDKNSSD---SLINKIDEIKTIVKEVTEFANEFN 134 KI ++K+ + + L E+K E DK ++ + E+ + +++ FA+ Sbjct: 211 KIVSEWEEVKKAWSKEL---AEIKAEDDKKLAEENQKIKEGAKELLKLSEKIQSFADTIA 267 Query: 135 DRSKKVEPKVKEVIEDGKRVTTHLEQITKEIETLK--ITGNGIANRFRRSLTDPFT---- 188 K+E K + + K++ + +E + K+ +K T N I F S + F Sbjct: 268 LTITKLERKFQIDEKFKKQLISTIELLNKKSVEVKTFATVNTIKKDFLLSELESFKEFNT 327 Query: 189 --LGSLASTANSDLDSVNKSVTKI-TELAKQLSEEGKKITANVETIKK---EVDYFSKRS 242 L + S + +K + +I E K+L+EE +KI VE +KK E SK Sbjct: 328 SWLEKIVSEWEEVKKAWSKELAEIKAEDDKKLAEENQKIKNGVEELKKINNEAFELSKTV 387 Query: 243 EIPLRDIEK 251 + ++EK Sbjct: 388 NKTIAELEK 396
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 35.8 bits (82), Expect = 7e-04 Identities = 26/228 (11%), Positives = 71/228 (31%), Gaps = 14/228 (6%) Query: 405 KQEVNNKYQIYTKQNQITNKTSNPHLFWNGRKNIKIELKNDLKQSIYLVKSKIDEIKKFV 464 QE+ + K + S + K + Sbjct: 115 IQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTAD 174 Query: 465 DQDKNSLNVNGLKNDLNKQVNLLASKYIQNLRDLDLELADHKYKIQKITSSILNEYQTNI 524 +L + + K ++ + + ++ ++ L + ++ Sbjct: 175 SAKIKTLEAEKAALEARQAE---LEKALEGAMNFSTADSAKIKTLEAEKAA-LAARKADL 230 Query: 525 KQAKKTHRLKIQQIK----------VFKESQIGIITYKFDSHNNIIEIKASKLKTIAQLK 574 ++A + E++ + + N ++K+KT+ K Sbjct: 231 EKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEK 290 Query: 575 EQIKNIKSELRLEKQISNLNKSSTQINNSEKLEKIKQLKEQIKVVKKQ 622 ++ K++L + Q+ N N+ S + + E KQL+ + + +++Q Sbjct: 291 AALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQ 338
>PF05272#Virulence-associated E family protein Length = 892 Score = 33.5 bits (76), Expect = 0.003 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 3/65 (4%) Query: 14 QNITKTFLNGAIVANDDITIKVKKGDIHALVGENGAGKSTLMSILFGLYQPTSGTIKV-N 72 Q + K L G + + K + L G G GKSTL++ L GL + + Sbjct: 574 QLVGKYILMGHVARVMEPGCKFDYSVV--LEGTGGIGKSTLINTLVGLDFFSDTHFDIGT 631 Query: 73 GKEEV 77 GK+ Sbjct: 632 GKDSY 636
>LIPPROTEIN48#Mycoplasma P48 major surface lipoprotein signature. Length = 428 Score = 48.8 bits (116), Expect = 3e-08 Identities = 90/497 (18%), Positives = 159/497 (31%), Gaps = 163/497 (32%) Query: 34 LGQRVLVVTDGGNIRDKTFNESSWEGVIKYGSQIHSNFDIKNELEARQFNYKSSIGGHTK 93 L + +++TD G I DK+FN+S++E + Q + +I N Sbjct: 60 LKLKPVLITDEGKIDDKSFNQSAFEALKAINKQ--TGIEINNV----------------- 100 Query: 94 WDETKHMFINEDYEYAKQNSNNYVETPDHTIDAFRTSYNTAIYKKADALLLAGFGHLGA- 152 F ++YN+A+ +L GF H + Sbjct: 101 ----------------------------EPSSNFESAYNSALSAGHKIWVLNGFKHQQSI 132 Query: 153 VDYAADRMKKAGNKTVVF------LDAQYKKDNVISVIFNSELAGFNAGWDAIMWANLPK 206 Y ++ + ++ +YK S+ FN + + F G+ W Sbjct: 133 KQYIDAHREELERNQIKIIGIDFDIETEYK--WFYSLQFNIKESAFTTGYAIASW----- 185 Query: 207 MTSLNSGEFSKEAIDASNSKTDMVLQGSATGNKYISIGMFGGITNKNAVDNYMWGLLAAM 266 L+ + SK + + FGG V + G + Sbjct: 186 ---LSEQDESKRVVAS-----------------------FGGGAFP-GVTTFNEGFAKGI 218 Query: 267 HVYNNKFAGKEIELTDNKQNKVKYKLQPVYYANLGSKAGVEKLNDVNESSWFSKGFDVGG 326 YN +K +K+ + + V S F G Sbjct: 219 LYYNQ----------KHKSSKIYHT------------------SPVKLDSGF-----TAG 245 Query: 327 AKKSGIVDSL-------IKNQADIIFPVAGPQINDVLESTGHKPYVIGVDTDQVTSVGSS 379 K + +++++ +K +I VAGP + + YVIGVD+DQ Sbjct: 246 EKMNTVINNVLSSTPADVKYNPHVILSVAGPATFETVRLANKGQYVIGVDSDQ------G 299 Query: 380 KKGNETRFITSAKKNIVSASVYALNRARSLQKATIKDKTYTSKHEKEIKDGTTLVGEQAD 439 ++ R +TS K+I A VY L+K E Sbjct: 300 MIQDKDRILTSVLKHIKQA-VYETLLDLILEKE-----------------------EGYK 335 Query: 440 WSISSSRKADTKWSIEKVNGSLTNAANLSVESIDYSKDKAKE-IEKNLKETLLKSGETFK 498 + +KAD KWS + + V +S + + I +KE + E + Sbjct: 336 PYVVKDKKADKKWS----HFGTQKEKWIGVAENHFSNTEEQAKINNKIKEAIKMFKELPE 391 Query: 499 QYLTKTSLDKALESISK 515 ++ + DKAL+ +K Sbjct: 392 DFVKYINSDKALKDGNK 408
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 33.4 bits (76), Expect = 0.002 Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 2/48 (4%) Query: 55 DKKPNNNDN--NSNSNSNPNNKPDSNTPSENKDPSKPDKTPKTPDTNP 100 D +PNN DN N N+ NPNN + N P +P PD NP Sbjct: 286 DDQPNNPDNPDNPNNPDNPNNPDEPNNPDNPNNPDNPDNGDNNNSDNP 333 Score = 31.9 bits (72), Expect = 0.006 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 9/68 (13%) Query: 57 KPNNNDNNSNSNSNPNNKPDSNTPSENKDPSKPDKTPKTPDTNPKQPEENPKKPDGQPHG 116 K N D + ++ PNN + + P+ +P+ PD+ P PD NP PD +G Sbjct: 275 KQNIEDIHFANDDQPNNPDNPDNPNNPDNPNNPDE-PNNPD--------NPNNPDNPDNG 325 Query: 117 DHPNNNHP 124 D+ N+++P Sbjct: 326 DNNNSDNP 333 Score = 30.0 bits (67), Expect = 0.025 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 6/54 (11%) Query: 28 TNSNAKQPNKKPEKPNGKDPIIPKKPDD----KKPNNNDNNSNSNSNPNNKPDS 77 N + P+ PN D P PD+ PNN DN N ++N ++ PD+ Sbjct: 284 ANDDQPNNPDNPDNPNNPDN--PNNPDEPNNPDNPNNPDNPDNGDNNNSDNPDA 335
>LIPPROTEIN48#Mycoplasma P48 major surface lipoprotein signature. Length = 428 Score = 29.2 bits (65), Expect = 0.046 Identities = 14/39 (35%), Positives = 21/39 (53%) Query: 1 MKKVTKLLLSILPISSISLLSVVSCSTTNSNNNKPDKPD 39 MKK K+LL + PI++I VSC + +N + D Sbjct: 1 MKKSKKILLGLSPIAAILPAVAVSCGNNDESNISFKEKD 39
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 36.3 bits (83), Expect = 3e-04 Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 14/119 (11%) Query: 27 IANPSDKKTGEKSENSEGQPKIPGGKTPEKNPKNPEEKPGHSDNSKPIEPKSPN-----D 81 I P ++ N++ P++ + P NP P E PG N +P +P+ D Sbjct: 310 IPRPDLTPGSAEAPNAQPLPEVSPAENPANNP-APNENPGTRPNPEPDPDLNPDANPDTD 368 Query: 82 NKPNNSDANPVEPKKPDPDHMASDQPQNGENNNV------DFSDVDKLPKEISFEHFEL 134 +P +P P +P+ H + + GE+ + D D+LP+ E L Sbjct: 369 GQPGTRPDSPAVPDRPNGRH--RKERKEGEDGGLLCKFFPDILACDRLPEPNPAEDLNL 425
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 85.1 bits (210), Expect = 6e-22 Identities = 65/255 (25%), Positives = 126/255 (49%), Gaps = 9/255 (3%) Query: 3 KVAIIAGGAKSLGKFLALGLDKNNYQVVVLDLNKKRLDQL----KEENHQIDTFVCDLTN 58 K+A I G A+ +G+ +A L + +D N ++L+++ K E + F D+ + Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 59 EKDVINVFEQIELKYKTIDTLVYNAGWAKSAKITSFEYQDFITSLKINLDGYFLTAKQAA 118 + + +IE + ID LV AG + I S +++ + +N G F ++ + Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128 Query: 119 KIMIKNNTKGNIIQINSKSGRVGSKYNSGYSAAKFGGVGLTQSLALDLAEHNIRVNSMML 178 K M + G+I+ + S V + Y+++K V T+ L L+LAE+NIR N + Sbjct: 129 KYM-MDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSP 187 Query: 179 GNLLDSEMFESL-IPQYAKKLNIKESEVKQYYINKVPLKRGCSFEDVLNVLLFYISEKAS 237 G+ +++M SL + + IK S ++ + +PLK+ D+ + +LF +S +A Sbjct: 188 GS-TETDMQWSLWADENGAEQVIKGS-LETFKTG-IPLKKLAKPSDIADAVLFLVSGQAG 244 Query: 238 YCTGQSINITGGQVM 252 + T ++ + GG + Sbjct: 245 HITMHNLCVDGGATL 259
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 34.4 bits (79), Expect = 0.001 Identities = 8/35 (22%), Positives = 17/35 (48%) Query: 13 LTEGTVAEVLVKVGDVVKEGQPLYFVETDKVNSEI 47 + V E++VK G+ V++G L + ++ Sbjct: 102 IENSIVKEIIVKEGESVRKGDVLLKLTALGAEADT 136
>ACETATEKNASE#Acetate kinase family signature. Length = 400 Score = 536 bits (1383), Expect = 0.0 Identities = 188/397 (47%), Positives = 267/397 (67%), Gaps = 7/397 (1%) Query: 2 ILVINSGSSSIKFKLFDTSKTIEPILDGLAERIGI-DGFLKFEHNNQKYKFEDPLPDHEH 60 ILVIN GSSS+K++L + SK + GLAERIGI D L N +K K + + DH+ Sbjct: 3 ILVINCGSSSLKYQLIE-SKDGNVLAKGLAERIGINDSLLTHNANGEKIKIKKDMKDHKD 61 Query: 61 AIQLILNKLL--ELKIISNIDEINGVGFRVVHGGEISHSS-IITDEILSKIQDSVKLAPL 117 AI+L+L+ L+ + +I ++ EI+ VG RVVHGGE SS +ITD++L I D ++LAPL Sbjct: 62 AIKLVLDALVNSDYGVIKDMSEIDAVGHRVVHGGEYFTSSVLITDDVLKAITDCIELAPL 121 Query: 118 HNPAAIIAIKAVKKLMPNTNMVACFDTAFHQTMPEVNYLYTVPYKWYEEFGVRKYGFHGI 177 HNPA I IKA ++MP+ MVA FDTAFHQTMP+ YLY +PY++Y ++ +RKYGFHG Sbjct: 122 HNPANIEGIKACTQIMPDVPMVAVFDTAFHQTMPDYAYLYPIPYEYYTKYKIRKYGFHGT 181 Query: 178 SYEYIVNKSSEILNKKKENLNLIVCHLGNGASISCIKDGKSYDTSMGLTPLAGLMMGTRS 237 S++Y+ +++EILNK E+L +I CHLGNG+SI+ +K+GKS DTSMG TPL GL MGTRS Sbjct: 182 SHKYVSQRAAEILNKPIESLKIITCHLGNGSSIAAVKNGKSIDTSMGFTPLEGLAMGTRS 241 Query: 238 GDIDVSICEYIAKQTNTDIFTITQTLNKQSGLLGLSQVSADMRDVLEQYDKN-DKKAVVA 296 G ID SI Y+ ++ N + LNK+SG+ G+S +S+D RD+ + KN DK+A +A Sbjct: 242 GSIDPSIISYLMEKENISAEEVVNILNKKSGVYGISGISSDFRDLEDAAFKNGDKRAQLA 301 Query: 297 VEKYVQIVADFIVKYANYLDNIDAVVFTAGIGENADVIRDLICKKVKLLDLQIDQDKNQA 356 + + V I YA + +D +VFTAGIGEN IR+ I ++ L ++D++KN+ Sbjct: 302 LNVFAYRVKKTIGSYAAAMGGVDVIVFTAGIGENGPEIREFILDGLEFLGFKLDKEKNKV 361 Query: 357 KYSDYKLISSEKSKIPVYAIRTNEEKMICLDTLNLIK 393 + +IS+ SK+ V + TNEE MI DT +++ Sbjct: 362 -RGEEAIISTADSKVNVMVVPTNEEYMIAKDTEKIVE 397
>LIPPROTEIN48#Mycoplasma P48 major surface lipoprotein signature. Length = 428 Score = 31.5 bits (71), Expect = 0.010 Identities = 42/169 (24%), Positives = 71/169 (42%), Gaps = 19/169 (11%) Query: 1 MKKSLKYLSSLSLI--LVPLVTISCTHTNKIKPGFIPTI-----NSSNKKEIIDLNNKLE 53 MKKS K L LS I ++P V +SC + ++ F ++ + + N +L Sbjct: 1 MKKSKKILLGLSPIAAILPAVAVSCGNNDESNISFKEKDISKYTTTNANGKQVVKNAELL 60 Query: 54 EFKSILEENNSKI-DNNLKDKIIKKLKEINTKSISLNNLGNIKNTLSELKNFSNDFNSDN 112 + K +L + KI D + + LK IN + G N + NF + +N + Sbjct: 61 KLKPVLITDEGKIDDKSFNQSAFEALKAINKQ------TGIEINNVEPSSNFESAYN--S 112 Query: 113 LLSFLKKIKELLLELEINELVSEVDQHINKITNDNQKDQLIINVDSNVE 161 LS KI L + +D H ++ + K II +D ++E Sbjct: 113 ALSAGHKIWVLNGFKHQQSIKQYIDAHREELERNQIK---IIGIDFDIE 158
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 173 bits (441), Expect = 8e-59 Identities = 51/132 (38%), Positives = 79/132 (59%), Gaps = 1/132 (0%) Query: 4 AIYPGSFNPFHKGHLNILKKAILLFDKVYVVVSKNVNKSIDPDLQSRVENIKNLIKDFNN 63 AIYPGSF+P GHL+I+++ LFD+VYV V +N NK +Q R+E I I N Sbjct: 3 AIYPGSFDPITFGHLDIIERGCRLFDQVYVAVLRNPNKQPMFSVQERLEQIAKAIAHLPN 62 Query: 64 VEIIINENKLTTTIAKELNASFIIRGLRSQADFEYEIKYYDGFKSLDPNIEVVYFISDYD 123 ++ E LT A++ A I+RGLR +DFE E++ + K+L ++E V+ + + Sbjct: 63 AQVDSFEG-LTVNYARQRQAGAILRGLRVLSDFELELQMANTNKTLASDLETVFLTTSTE 121 Query: 124 KRSLSSTILKEI 135 LSS+++KE+ Sbjct: 122 YSFLSSSLVKEV 133
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 765 bits (1977), Expect = 0.0 Identities = 289/571 (50%), Positives = 411/571 (71%), Gaps = 1/571 (0%) Query: 1 MSKQIKGIAASDGISLAKALVIKEIKLDVQKQLIDDVDQQIVKLEQAINQTITDLKKIQK 60 M +I GIAAS G+++AKA + E +D++K I DV +I KL A+ ++ +L+ I+ Sbjct: 1 MHHKITGIAASSGVAIAKAFIHLEPNVDIEKTSITDVSTEIEKLTAALEKSKEELRAIKD 60 Query: 61 ITLEKLGEEKAAIFDAHQDIANDPAIKEEVVQLIKTEKVNAEYALFIVSNNYFEMFSQLE 120 T +G +KA IF AH + +DP + + + I+ E++NAEYAL VS+ + MF ++ Sbjct: 61 QTEASMGADKAEIFAAHLLVLDDPELVDGIKGKIENEQMNAEYALKEVSDMFVSMFESMD 120 Query: 121 DPYFKERSADIKDVSFRIISHILGLKIHDLSTIDKEVIIISDDLTPSQTAQLDKKFVKGF 180 + Y KER+ADI+DVS R++ H++G++ L+TI +E +II++DLTPS TAQL+K+FVKGF Sbjct: 121 NEYMKERAADIRDVSKRVLGHLIGVETGSLATIAEETVIIAEDLTPSDTAQLNKQFVKGF 180 Query: 181 LTNVGGRTSHAAIMARSLEIPAILGLKNITELVKTDDLIALDGSSGIVELDLNDDDIKNY 240 T++GGRTSH+AIM+RSLEIPA++G K +TE ++ D++ +DG GIV ++ ++++K Y Sbjct: 181 ATDIGGRTSHSAIMSRSLEIPAVVGTKEVTEKIQHGDMVIVDGIEGIVIVNPTEEEVKAY 240 Query: 241 QTKVKQYLELKDQLKKFKDKPSLTKDKIKKLIEANIGSTNDIQSVLDSGAEGIGLFRTEF 300 + K + + K + K +PS TKD + ANIG+ D+ VL +G EGIGL+RTEF Sbjct: 241 EEKRAAFEKQKQEWAKLVGEPSTTKDGAHVELAANIGTPKDVDGVLANGGEGIGLYRTEF 300 Query: 301 LYMNNDHFPTEEEQFEAYKKVVSQINHL-VVFRTLDIGGDKKLSYFKFDEEMNPFLGYRA 359 LYM+ D PTEEEQFEAYK+VV +++ VV RTLDIGGDK+LSY + +E+NPFLG+RA Sbjct: 301 LYMDRDQLPTEEEQFEAYKEVVQRMDGKPVVIRTLDIGGDKELSYLQLPKELNPFLGFRA 360 Query: 360 IRFTLDRKDIFKDQIRALLRASAFGKLGIMFPMIATIDEFKQAKAFVEECKLELDKENIK 419 IR L+++DIF+ Q+RALLRAS +G L +MFPMIAT++E +QAKA ++E K +L E + Sbjct: 361 IRLCLEKQDIFRTQLRALLRASTYGNLKVMFPMIATLEELRQAKAIMQEEKDKLLSEGVD 420 Query: 420 YDKQVQIGMMVEIPSAAILADQFAKYADFFSIGTNDLIQYSFASDRMNQNVSYLYQPLNP 479 +++G+MVEIPS A+ A+ FAK DFFSIGTNDLIQY+ A+DRMN+ VSYLYQP +P Sbjct: 421 VSDSIEVGIMVEIPSTAVAANLFAKEVDFFSIGTNDLIQYTMAADRMNERVSYLYQPYHP 480 Query: 480 SLLRLIQLTISGAHKHNKWVGMCGEMAGDSKALPILLGLDLDAFSMSATSVLKARSLMSK 539 ++LRL+ + I AH KWVGMCGEMAGD A+P+LLGL LD FSMSATS+L ARS + K Sbjct: 481 AILRLVDMVIKAAHSEGKWVGMCGEMAGDEVAIPLLLGLGLDEFSMSATSILPARSQLLK 540 Query: 540 IESIKAKELANKALECQTSQQVNDLVEEFLK 570 + + K A KAL T+++V LV++ Sbjct: 541 LSKEELKPFAQKALMLDTAEEVEQLVKKTYL 571
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 29.6 bits (66), Expect = 0.040 Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 3/49 (6%) Query: 74 PSEEKIIKEIEKKIEEKIIIP---PAKKEEKVEAAKPEPKPVVRRPETK 119 + + E E + E P P E+ KP+PKPV + E Sbjct: 62 QPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQP 110 Score = 29.6 bits (66), Expect = 0.041 Identities = 12/43 (27%), Positives = 18/43 (41%) Query: 74 PSEEKIIKEIEKKIEEKIIIPPAKKEEKVEAAKPEPKPVVRRP 116 P K + +K + K P ++ E K + KPV RP Sbjct: 79 PEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRP 121
>56KDTSANTIGN#Rickettsia 56kDa type-specific antigen protein signature. Length = 533 Score = 32.6 bits (74), Expect = 0.007 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 7/92 (7%) Query: 499 ISAIFHATDFIKDESNPLKMLEEKQKEKYKDAGIFADFAVIEVDFAKLLDNSDYKYSIWS 558 ++A+ +A K ++P+K+L +K + Y D FAD A I V L NS I S Sbjct: 247 LAALSNAN---KPSASPVKVLSDKIIQIYSDIKPFADIAGINVPDTG-LPNSASIEQIQS 302 Query: 559 ESKEISNQYQNKKEDLISLITNNYAKSNKQIQ 590 + +E+ + + ++ I N + QI Sbjct: 303 KIQELGDTLEELRDSFDGYINNAFV---NQIH 331
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 31.1 bits (70), Expect = 0.012 Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 5/77 (6%) Query: 74 PSPEKIIKESEKQEPNKLIIPKKEEKEIKEVVKPEIKPEIIRP----ETLKPKPSTTRVK 129 P++ EK +P PK +K ++E K ++KP RP E P T+ Sbjct: 80 EPPKEAPVVIEKPKPKPKPKPKPVKK-VQEQPKRDVKPVESRPASPFENTAPARLTSSTA 138 Query: 130 TKITINGVTVDAEIEAP 146 T T VT A Sbjct: 139 TAATSKPVTSVASGPRA 155
>SUBTILISIN#Subtilisin serine protease family (S8) signature. Length = 326 Score = 56.8 bits (137), Expect = 1e-10 Identities = 41/290 (14%), Positives = 97/290 (33%), Gaps = 64/290 (22%) Query: 279 IIGVIDT--------LFSNQVYFHKWVEYKEMIDKNIYVYDNDYDHGTAISSIIVDGPRL 330 + V+DT L + + + + + + ++ + HGT ++ I Sbjct: 44 KVAVLDTGCDADHPDLKARIIGGRNFTDDD---EGDPEIFKDYNGHGTHVAGTIAATE-- 98 Query: 331 NPRLDDGCGRFRVKHFGIAP-----------SNYFNSLS-LLRVIEEIIISNRNIKVWNL 378 ++ G+AP +++ I I + + + ++ Sbjct: 99 ----NENGV------VGVAPEADLLIIKVLNKQGSGQYDWIIQGIYYAI--EQKVDIISM 146 Query: 379 SLGSKFEINENYISIEASILDKLQYQYDVIFVIA-GTNKIVNSDVVKIGSPADSINALVV 437 SLG ++ E + +++ + ++ + A G + ++G P + V Sbjct: 147 SLGGPEDVPELHEAVKKA------VASQILVMCAAGNEGDGDDRTDELGYPGCYNEVISV 200 Query: 438 NSVDFKNNPTNYSRTGPVLSFFNKPDVSYYGGTIDEPIYVFTQNNKLEKLGTSFAAPWIA 497 +++F + + +S + + D+ G I + GTS A P +A Sbjct: 201 GAINFDRHASEFSNSNN------EVDLVAPGEDILSTVP---GGKYATFSGTSMATPHVA 251 Query: 498 RKLAYLI------HIIGLSKEVAKALIIDSACS-WNTDFDNKHIIGYGVV 540 LA + L++ A +I N+ G G++ Sbjct: 252 GALALIKQLANASFERDLTEPELYAQLIKRTIPLGNSPKME----GNGLL 297
>SALSPVAPROT#Salmonella virulence plasmid 28.1kDa A protein signature. Length = 255 Score = 30.6 bits (68), Expect = 0.010 Identities = 9/23 (39%), Positives = 14/23 (60%) Query: 264 DIKTNKYIANSTTDWPWYVSNGF 286 D+ I+ S+ DWPW++SN Sbjct: 150 DVSLEDIISESSIDWPWFLSNSL 172
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 56.4 bits (136), Expect = 2e-10 Identities = 38/192 (19%), Positives = 77/192 (40%), Gaps = 6/192 (3%) Query: 245 EAKISVAENQLINVKSEQERIKNQLQQKQNEINENNKLISNLEAKLQQLKSEFENLNSQK 304 EA ++ L+ + EQ R Q+ + E+N+ +L E Q + E + Sbjct: 133 EADTLKTQSSLLQARLEQTRY--QILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSL 190 Query: 305 SEDWNKDLKNQLKEKQDQLTKIKSEITKNEQTINRLKEQVTSLESEL---RTSRNNNLEK 361 ++ +NQ +K+ L K ++E INR + +S L + + Sbjct: 191 IKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIA 250 Query: 362 QNELKEKQKKIENINNENNSKKQESLQLESQINILNSKI-QEQEKVSQELEKKIKEVEKN 420 ++ + E++ K NE K + Q+ES+I + + E+ K+++ N Sbjct: 251 KHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDN 310 Query: 421 KNIIEEEIEKLR 432 ++ E+ K Sbjct: 311 IGLLTLELAKNE 322 Score = 51.0 bits (122), Expect = 7e-09 Identities = 22/142 (15%), Positives = 64/142 (45%), Gaps = 15/142 (10%) Query: 199 LNQKLSDIKKYNEKINLLNSQINNLKEQSKILKKQFDSEQSKLSDIEAKISVAENQLINV 258 QK ++ K + + ++IN + S++ K + D S + K ++A++ ++ Sbjct: 202 KYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDD----FSSLLHKQAIAKHAVLEQ 257 Query: 259 KSEQERIKNQLQQKQNEINENNKLISNLEAKLQQLKSEFENLNSQKSEDWNKDLKNQLKE 318 +++ N+L+ ++++ + I + + + Q + F+ ++ ++L++ Sbjct: 258 ENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFK-----------NEILDKLRQ 306 Query: 319 KQDQLTKIKSEITKNEQTINRL 340 D + + E+ KNE+ Sbjct: 307 TTDNIGLLTLELAKNEERQQAS 328 Score = 35.2 bits (81), Expect = 6e-04 Identities = 31/170 (18%), Positives = 64/170 (37%), Gaps = 14/170 (8%) Query: 7 LLAVISVITATGLGYVGYKNIAVSNNTKEQSVLNQIKAIKKELKTKEQQLKNIQKILNDS 66 + I L + + N E+ VL IK++ T + Q + L+ Sbjct: 153 YQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKK 212 Query: 67 ENKKNELTNQINNLDA----------NINSLNDKGKTNKNRLNKLDSDLVKINSEIKLDN 116 ++ + +IN + + +SL K K+ + + ++ V+ +E+++ Sbjct: 213 RAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYK 272 Query: 117 QNISLKENEIKKLEEQIKENKRLLK----TILNEFFKKEKELEDLFAKNE 162 + E+EI +E+ + +L K L + L AKNE Sbjct: 273 SQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNE 322
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 54.3 bits (130), Expect = 1e-09 Identities = 63/389 (16%), Positives = 154/389 (39%) Query: 148 KIRKLQDELVLSNTKLDELKEQIKTYESELIKLETDKNNKQKNIDKVKNELAKKQHLILV 207 + K + E K +L K + +L + +N ++ + K L++K I Sbjct: 58 RADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQE 117 Query: 208 LKLKIQEYDQLKKDYSNLEEQFNSLKKSVNEKQKEIQEKTEILQRTNEQLQQLSNSNDND 267 L+ + + ++ + N ++ K++ ++ + + L++ E S ++ Sbjct: 118 LEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAK 177 Query: 268 KKELENKISKLEQTEEKISNLNNQINQVKSEISDLNKKKESDLLNVKSEISDIDKQLETA 327 K LE + + LE + ++ + S K E++ + + +D++K LE A Sbjct: 178 IKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGA 237 Query: 328 NTKLSQSNESLNQLKKVIEKIKKDKSDNVLENQKLNEQIEQKNAEIQKLEREQQQYLSDI 387 + + + L+ ++ +++ + +A+I+ LE E+ ++ Sbjct: 238 MNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEK 297 Query: 388 KKLNTQKSNLEQKLEKIKKENELKEQQLKNQQLEYEKLSREYTRLFAFRIVLNSEISDLT 447 L Q L + ++++ + + K + E++KL + A R L ++ Sbjct: 298 ADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASR 357 Query: 448 NEIAAKKIILKNHKKFIEKEEQNLELLTKKYDSIKQDLKAKQQQFEQKNSELLMLNTQKS 507 + + ++ + E + + L + D+ ++ K ++ E+ NS+L L Sbjct: 358 EAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQVEKALEEANSKLAALEKLNK 417 Query: 508 EFENKISNLTKEQNEFIEKQKQLSNEIKE 536 E E KE+ E K + + +KE Sbjct: 418 ELEESKKLTEKEKAELQAKLEAEAKALKE 446 Score = 45.8 bits (108), Expect = 5e-07 Identities = 46/349 (13%), Positives = 125/349 (35%) Query: 67 KDAEIIKNSNEKIKILKQQQSDITNKLTQENNKINELIKNLNISISESKAKKEQKIKLEQ 126 K E + LK + SD++ + +EL + L+ + + + + + Sbjct: 54 KVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKAS 113 Query: 127 ELAQLKREKLKNDANHTFFNGKIRKLQDELVLSNTKLDELKEQIKTYESELIKLETDKNN 186 ++ +L+ K + ++ + L + E L Sbjct: 114 KIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTA 173 Query: 187 KQKNIDKVKNELAKKQHLILVLKLKIQEYDQLKKDYSNLEEQFNSLKKSVNEKQKEIQEK 246 I ++ E A + L+ ++ S + + K ++ ++ ++++ Sbjct: 174 DSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKA 233 Query: 247 TEILQRTNEQLQQLSNSNDNDKKELENKISKLEQTEEKISNLNNQINQVKSEISDLNKKK 306 E + + + +K LE + ++LE+ E N + + + Sbjct: 234 LEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAAL 293 Query: 307 ESDLLNVKSEISDIDKQLETANTKLSQSNESLNQLKKVIEKIKKDKSDNVLENQKLNEQI 366 E++ +++ + ++ ++ L S E+ QL+ +K+++ + Q L + Sbjct: 294 EAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDL 353 Query: 367 EQKNAEIQKLEREQQQYLSDIKKLNTQKSNLEQKLEKIKKENELKEQQL 415 + ++LE E Q+ K + +L + L+ ++ + E+ L Sbjct: 354 DASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQVEKAL 402 Score = 38.9 bits (90), Expect = 7e-05 Identities = 48/341 (14%), Positives = 114/341 (33%), Gaps = 3/341 (0%) Query: 288 LNNQINQVKSEISDLNKKKESDLLNVKSEISDIDKQLETANTKLSQSNESLNQLKKVIEK 347 L N+V + + + + + L+ N+ LS +N++L + + Sbjct: 33 LVVNTNEVSAVATRSQTDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTE 92 Query: 348 IKKDKSDNVLENQKLNEQIEQKNAEIQKLEREQQQYLSDIKKLNTQKSNLEQKLEKIKKE 407 + + + +N K + K E++ + + ++ L +T S + LE K Sbjct: 93 ELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAA 152 Query: 408 NELKEQQLKNQQLEYEKLSREYTRLFAFRIVLNSEISDLTNEIAAKKIILKNHKKFIEKE 467 ++ L+ S A L +E + L A + L+ F + Sbjct: 153 LAARKADLEKALEGAMNFSTA---DSAKIKTLEAEKAALEARQAELEKALEGAMNFSTAD 209 Query: 468 EQNLELLTKKYDSIKQDLKAKQQQFEQKNSELLMLNTQKSEFENKISNLTKEQNEFIEKQ 527 ++ L + ++ ++ E + + + E + + L Q E + Sbjct: 210 SAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKAL 269 Query: 528 KQLSNEIKEINNKISSKKDEFLKDKDDLKRIKEVVDSSNRTIEELKHTNENIEKANAEKQ 587 + N + KI + + E + + ++ N + L+ + +A + + Sbjct: 270 EGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLE 329 Query: 588 EEIDKKADEILDLIKEVEMYETKISQLTRDLNAAEKEHQRL 628 E K ++ + + E EHQ+L Sbjct: 330 AEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKL 370 Score = 38.1 bits (88), Expect = 1e-04 Identities = 50/346 (14%), Positives = 126/346 (36%), Gaps = 3/346 (0%) Query: 30 DTTINNQEHEFKQLEEKLKTLQNEILNSEAKIKDLNTKDAEIIKNSNEKIKILKQQQSDI 89 + E +EKL+ + +KI++L + A++ K + + I Sbjct: 84 KDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKI 143 Query: 90 TNKLTQENNKINE---LIKNLNISISESKAKKEQKIKLEQELAQLKREKLKNDANHTFFN 146 ++ L K L +++ S A + LE E A L+ + + + Sbjct: 144 KTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAM 203 Query: 147 GKIRKLQDELVLSNTKLDELKEQIKTYESELIKLETDKNNKQKNIDKVKNELAKKQHLIL 206 ++ + L + E L I ++ E A + Sbjct: 204 NFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQA 263 Query: 207 VLKLKIQEYDQLKKDYSNLEEQFNSLKKSVNEKQKEIQEKTEILQRTNEQLQQLSNSNDN 266 L+ ++ S + + K ++ ++ +++ ++++L + L++ +++ Sbjct: 264 ELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASRE 323 Query: 267 DKKELENKISKLEQTEEKISNLNNQINQVKSEISDLNKKKESDLLNVKSEISDIDKQLET 326 KK+LE + KLE+ + + + + K+ E++ ++ + + ++ Sbjct: 324 AKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQS 383 Query: 327 ANTKLSQSNESLNQLKKVIEKIKKDKSDNVLENQKLNEQIEQKNAE 372 L S E+ Q++K +E+ + N++L E + E Sbjct: 384 LRRDLDASREAKKQVEKALEEANSKLAALEKLNKELEESKKLTEKE 429 Score = 36.6 bits (84), Expect = 4e-04 Identities = 46/274 (16%), Positives = 97/274 (35%), Gaps = 7/274 (2%) Query: 253 TNEQLQQLSNSNDNDKKELENKISKLEQTEEKISNLNNQINQVKSEISDLNKKKESDLLN 312 TNE + S + ++++ + K E + N+ ++ + D N + +L N Sbjct: 37 TNEVSAVATRSQTDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSN 96 Query: 313 VKSEISDIDKQLETANTKLSQSNESLNQLKKVIEKIKKDKSDNVLENQKLNEQIEQKNAE 372 K ++ DK L +K+ + L+K +E + + + + L + A Sbjct: 97 AKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAAR 156 Query: 373 IQKLEREQQQYLSDIK-------KLNTQKSNLEQKLEKIKKENELKEQQLKNQQLEYEKL 425 LE+ + ++ L +K+ LE + +++K E + + L Sbjct: 157 KADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTL 216 Query: 426 SREYTRLFAFRIVLNSEISDLTNEIAAKKIILKNHKKFIEKEEQNLELLTKKYDSIKQDL 485 E L A + L + N A +K + E L K + Sbjct: 217 EAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFS 276 Query: 486 KAKQQQFEQKNSELLMLNTQKSEFENKISNLTKE 519 A + + +E L +K++ E++ L Sbjct: 277 TADSAKIKTLEAEKAALEAEKADLEHQSQVLNAN 310
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 53.5 bits (128), Expect = 2e-09 Identities = 65/335 (19%), Positives = 129/335 (38%), Gaps = 2/335 (0%) Query: 271 DKQTQITQNNKQIDQLTKQVKEYENQLETLKNEKNQVWHKELKDELKSLENKLSEVDSKI 330 T+ + + Q E EN LKN +K LKD L +LS K+ Sbjct: 42 AVATRSQTDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKL 101 Query: 331 KKNNQLISELNKQISSLKQELKNLENNNSTKQQELNEKLNKIQAIKNENQSYFKQKYDLE 390 +KN++ +SE +I L+ +LE KI+ ++ E + +K DLE Sbjct: 102 RKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLE 161 Query: 391 VKTRSLKSKIRHQEQIAKKLDIKIEGIITNKSLLEKEIDNLKLTTTKNKETLKDLIKEDN 450 + K L+ + + ++ LEK ++ +T + +K L E Sbjct: 162 KALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKA 221 Query: 451 QLENKFNKLDILRDESKTKIEVFKLSIKKAKSDLEWTNKQLVEKEKQIKNITSEITQLKQ 510 L + L+ + + IK +++ + E EK ++ + T Sbjct: 222 ALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSA 281 Query: 511 QQKDLAQEISFLTTSIDKLESEKSTKQTELKQLETEITNIESGLTKEKLETELNEKQKEI 570 + K L E + L LE + + L ++ S K++LE E + +++ Sbjct: 282 KIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLD--ASREAKKQLEAEHQKLEEQN 339 Query: 571 EQLEQDHKSLLVNQEEADKLLKEYEDQKKEINKDL 605 + E +SL + + + + K+ E + +++ + Sbjct: 340 KISEASRQSLRRDLDASREAKKQLEAEHQKLEEQN 374 Score = 43.5 bits (102), Expect = 3e-06 Identities = 49/351 (13%), Positives = 134/351 (38%), Gaps = 2/351 (0%) Query: 206 IKKYEEKNKILVSQTNDLKKQNVELTNEVETLNQQFRKTNSELESITQKINDTKQEQEKI 265 NK L ++L ++ ++ ++ + S+++ + + D ++ E Sbjct: 73 NSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGA 132 Query: 266 KKQLIDKQTQITQNNKQIDQLTKQVKEYENQLETLKNEKNQVW--HKELKDELKSLENKL 323 +I + L + + E LE N K L+ E +LE + Sbjct: 133 MNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQ 192 Query: 324 SEVDSKIKKNNQLISELNKQISSLKQELKNLENNNSTKQQELNEKLNKIQAIKNENQSYF 383 +E++ ++ + + +I +L+ E L + ++ L +N A + ++ Sbjct: 193 AELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLE 252 Query: 384 KQKYDLEVKTRSLKSKIRHQEQIAKKLDIKIEGIITNKSLLEKEIDNLKLTTTKNKETLK 443 +K LE + L+ + + KI+ + K+ LE E +L+ + + Sbjct: 253 AEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQ 312 Query: 444 DLIKEDNQLENKFNKLDILRDESKTKIEVFKLSIKKAKSDLEWTNKQLVEKEKQIKNITS 503 L ++ + +L+ + + + ++ + S + + DL+ + + + E + + + Sbjct: 313 SLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEE 372 Query: 504 EITQLKQQQKDLAQEISFLTTSIDKLESEKSTKQTELKQLETEITNIESGL 554 + + ++ L +++ + ++E ++L LE +E Sbjct: 373 QNKISEASRQSLRRDLDASREAKKQVEKALEEANSKLAALEKLNKELEESK 423 Score = 40.8 bits (95), Expect = 2e-05 Identities = 38/218 (17%), Positives = 76/218 (34%), Gaps = 2/218 (0%) Query: 437 KNKETLKDLIKEDNQLENKFNKLDILRDESKTKIEVFKLSIKKAKSDLEWTNKQLVEKEK 496 K +E E+N L+ K + L K + + AK L +K L EK Sbjct: 54 KVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKAS 113 Query: 497 QIKNITSEITQLKQQQKDLAQEISFLTTSIDKLESEKSTKQTELKQLETEITNIESGLTK 556 +I+ + + L++ + + + I LE+EK+ LE + + Sbjct: 114 KIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNF--S 171 Query: 557 EKLETELNEKQKEIEQLEQDHKSLLVNQEEADKLLKEYEDQKKEINKDLSKKTYTITTLE 616 ++ + E LE L E A + K + + + LE Sbjct: 172 TADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLE 231 Query: 617 KQITEIQKENSDLDIEIKNIKNMKSSLVQEVKFIQTTI 654 K + ++ +IK ++ K++L ++ + Sbjct: 232 KALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKAL 269
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 47.4 bits (112), Expect = 1e-07 Identities = 39/266 (14%), Positives = 86/266 (32%) Query: 242 EINNKQVILNNSKDQLKQLVESTTKTKTELDNKTLELNQTNKKIDELKQSIEQIKKSIKD 301 E N ++ ++ K L + + EL N +L + +K + E I++++ D Sbjct: 65 ENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKAD 124 Query: 302 KQTENQELDKQLKEKNIELEELEKEKQKYLDSIKKLTKKSNDLEQAFKDILNSNKQKEQQ 361 + + + +++ LE EK L K K E + Sbjct: 125 LEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAE 184 Query: 362 IKTLEQEYNKLLKQHKLLSALKIDQNSQISGLSEDITVKKLIISNLEKTTSSQQKEVDKL 421 LE +L K + +++I L + ++LEK Sbjct: 185 KAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTAD 244 Query: 422 SGEYNTIKKTLQDKSKELQEKTSEFLKLNNEKTNLEKQVKDFTEKQKELLKKQNKLSSEI 481 S + T++ E N T ++K ++ L ++ L + Sbjct: 245 SAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQS 304 Query: 482 KEIESKISEIKNKLLKDDQGLKNIKE 507 + + + ++ L + K ++ Sbjct: 305 QVLNANRQSLRRDLDASREAKKQLEA 330 Score = 43.9 bits (103), Expect = 2e-06 Identities = 44/313 (14%), Positives = 110/313 (35%), Gaps = 10/313 (3%) Query: 69 AKDIQNINTKIELLKQQEEQIKDEINKENNVINKLNEDIRLFKAEVKTKKEQKVKLEAQL 128 + + + + + L ++ K+++ K + +++ I+ +A ++ Sbjct: 77 SFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFS 136 Query: 129 NKLKEQKNQTNKKQVLINTRISWLKDQLNSSNIDYDNLKKLIETYKNDLSKLEKDKLDKL 188 + ++ + R + L+ L + I+T + + + LE + + Sbjct: 137 TADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELE 196 Query: 189 KNNSDLNKQLTRSKYLLSILQAKIQKQKELKTKLLELEEQKNNLQKTVKEKQQEINNKQV 248 K T + L+A+ K L + E N K + + ++ Sbjct: 197 KALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKA 256 Query: 249 ILNNSKDQLKQLVESTTKTKTELDNKTLELNQTNKKIDELKQSIEQIKKSIKDKQTENQE 308 L + +L++ +E + ++ + L+ ++ + Q Sbjct: 257 ALEARQAELEKALEGA---MNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQS 313 Query: 309 LDKQLKEKNIELEELEKEKQKYLDSIKKLTKKSNDLEQAFKDILNSNKQKEQQIKTLEQE 368 L + L ++LE E QK L +++ E + + + + K LE E Sbjct: 314 LRRDLDASREAKKQLEAEHQK-------LEEQNKISEASRQSLRRDLDASREAKKQLEAE 366 Query: 369 YNKLLKQHKLLSA 381 + KL +Q+K+ A Sbjct: 367 HQKLEEQNKISEA 379
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 53.9 bits (129), Expect = 1e-09 Identities = 61/390 (15%), Positives = 150/390 (38%), Gaps = 3/390 (0%) Query: 257 TTTQKQNEIKKQLSDKQKEVVRNNGILEQKNEDLNNIKIELEELNNQKAQNWTKNLKEIL 316 T+ Q + +++ ++ + N L+ KN DL+ L++ +N + N KE L Sbjct: 43 VATRSQTDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKD-HNDELTEELSNAKEKL 101 Query: 317 DKKEKDKQNIEKQISNSQKTISKLNDEINDLKKELTNSNSNNSSIKTEIAEKENQIKTIK 376 K +K +I + + L + T ++ +++ E A + ++ Sbjct: 102 RKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLE 161 Query: 377 EEIEFKKQESQNLESDINDLKTNILNQEELNKQLDSKIQSKQQEKQSKQQEIQAIKEENS 436 + +E S + I L+ E +L+ ++ + +I+ ++ E + Sbjct: 162 KALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKA 221 Query: 437 KANDEIKNLENKNSGLNKEIKSLNDTKTQIEQKILDVSNSIKNKKTNLENVTKELDSKVK 496 +LE G + + +E + + + LE + Sbjct: 222 ALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSA 281 Query: 497 ELDELKEKNKNLSEETQVLKNKIESSKLKIQDLEKTKLRKEQEISNLEKELESLDYDKNY 556 ++ L+ + L E L+++ + Q L + + LE E + L+ Sbjct: 282 KIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKI 341 Query: 557 NLLEKQKLENDEKINKLHQEQTLLKNKQKELKEKLQELETTQSDLRIKLLEKTKTKENLA 616 + +Q L D ++ + + L+ + ++L+E+ + E ++ LR L + K+ + Sbjct: 342 SEASRQSLRRD--LDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQVE 399 Query: 617 GEATHIKAENKEIEELIQKIQSKKEELEKQ 646 ++ +E+L ++++ K+ EK+ Sbjct: 400 KALEEANSKLAALEKLNKELEESKKLTEKE 429 Score = 50.8 bits (121), Expect = 2e-08 Identities = 63/393 (16%), Positives = 157/393 (39%), Gaps = 7/393 (1%) Query: 267 KQLSDKQKEVVRNNGILEQKNEDLNNIKIELEELNNQKAQNWTKNLKEILDKKEKDKQNI 326 L K ++ NN L+ N++L +E + ++ ++ +I + + + + Sbjct: 67 NTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKAD-L 125 Query: 327 EKQISNSQKTISKLNDEINDLKKELTNSNSNNSSIKTEIAEKENQIKTIKEEIEFKKQES 386 EK + + + + +I L+ E + + ++ + N +I+ + E Sbjct: 126 EKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEK 185 Query: 387 QNLESDINDLKTNILNQEELNKQLDSKIQSKQQEKQSKQQEIQAIKEENSKANDEIKNLE 446 LE+ +L+ + + +KI++ + EK + +++ A + Sbjct: 186 AALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADS 245 Query: 447 NKNSGLNKEIKSLNDTKTQIEQKILDVSNSIKNKKTNLENVTKELDSKVKELDELKEKNK 506 K L E +L + ++E+ + N ++ + E + E +L+ +++ Sbjct: 246 AKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQ 305 Query: 507 NLSEETQVLKNKIESSKLKIQDLEKTKLRKEQEISNLEKELESLDYDKNYNLLEKQKLEN 566 L+ Q L+ +++S+ + LE + E++ E +SL D + + K++LE Sbjct: 306 VLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEA 365 Query: 567 --DEKINKLHQEQTLLKNKQKELKEKLQELETTQSDLRIKLLEKTKTKENLAGEATHIKA 624 + + + ++ +++L + + + L + ++ K Sbjct: 366 EHQKLEEQNKISEASRQSLRRDLDASREAKKQVEKALEEANSKLAALEKLNKELEESKKL 425 Query: 625 ENKEIEELIQKIQSK----KEELEKQVELIEKP 653 KE EL K++++ KE+L KQ E + K Sbjct: 426 TEKEKAELQAKLEAEAKALKEKLAKQAEELAKL 458 Score = 50.1 bits (119), Expect = 2e-08 Identities = 64/385 (16%), Positives = 144/385 (37%), Gaps = 3/385 (0%) Query: 219 KISEIKNKVNQIKDDIQKLTSDKNGLVKEINKTQQEILTTTQKQNEIKKQLSDKQKEVVR 278 K+ E +K + ++ SD + K + E+ E ++ E Sbjct: 54 KVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKAS 113 Query: 279 NNGILEQKNEDLNNIKIELEELNNQKAQNWTKNLKEILDKKEKDKQNIEKQISNSQKTIS 338 LE + DL + K L+ K ++EK + + + Sbjct: 114 KIQELEARKADLEKALEGAMNFS-TADSAKIKTLEAEKAALAARKADLEKALEGAMNFST 172 Query: 339 KLNDEINDLKKELTNSNSNNSSIKTEIAEKENQIKTIKEEIEFKKQESQNLESDINDLKT 398 + +I L+ E + + ++ + N +I+ + E L + DL+ Sbjct: 173 ADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEK 232 Query: 399 NILNQEELNKQLDSKIQSKQQEKQSKQQEIQAIKEENSKANDEIKNLENKNSGLNKEIKS 458 + + +KI++ + EK + + +++ A + K L E + Sbjct: 233 ALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAA 292 Query: 459 LNDTKTQIEQKILDVSNSIKNKKTNLENVTKELDSKVKELDELKEKNKNLSEETQVLKNK 518 L K +E + ++ + ++ + +L+ + E +L+E+NK Q L+ Sbjct: 293 LEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRD 352 Query: 519 IESSKLKIQDLEK--TKLRKEQEISNLEKELESLDYDKNYNLLEKQKLENDEKINKLHQE 576 +++S+ + LE KL ++ +IS ++ D D + ++ + +E +KL Sbjct: 353 LDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQVEKALEEANSKLAAL 412 Query: 577 QTLLKNKQKELKEKLQELETTQSDL 601 + L K ++ K +E Q+ L Sbjct: 413 EKLNKELEESKKLTEKEKAELQAKL 437 Score = 48.1 bits (114), Expect = 8e-08 Identities = 42/283 (14%), Positives = 107/283 (37%), Gaps = 2/283 (0%) Query: 318 KKEKDKQNIEKQISNSQKTISKLNDEINDLKKELTNSNSNNSSIKTEIAEKENQIKTIKE 377 ++ + Q+ K E N LK + ++ + NN ++K E ++ KE Sbjct: 40 VSAVATRSQTDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKE 99 Query: 378 EIEFKKQESQNLESDINDLKTNILNQEELNKQLDSKIQSKQQEKQSKQQEIQAIKEENSK 437 ++ + S I +L+ + E+ + + + + ++ + E A+ + Sbjct: 100 KLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKAD 159 Query: 438 ANDEIKNLENKNSGLNKEIKSLNDTKTQIEQKILDVSNSIKNKKTNLENVTKELDSKVKE 497 ++ N ++ + +IK+L K +E + ++ +++ + ++ + E Sbjct: 160 LEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAE 219 Query: 498 LDELKEKNKNLSEETQVLKNKIESSKLKIQDLEKTKLRKEQEISNLEKELESLDYDKNYN 557 L + +L + + N + KI+ LE K E + LEK LE + Sbjct: 220 KAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTAD 279 Query: 558 LLEKQKL--ENDEKINKLHQEQTLLKNKQKELKEKLQELETTQ 598 + + L E + + + + ++L+ ++ Sbjct: 280 SAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASR 322 Score = 47.4 bits (112), Expect = 2e-07 Identities = 55/367 (14%), Positives = 144/367 (39%), Gaps = 2/367 (0%) Query: 156 KLNEKSNDLTNKKHNIENKEHEVEHEIAKLNNDLLKTKLEELRLEKILTSIKEYTEKNRS 215 K ++ S + K + + E+ + KL + + +++++ + + Sbjct: 72 KNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEG 131 Query: 216 LEAKISEIKNKVNQIKDDIQKLTSDKNGLVKEINKTQQEILTTTQKQNEIKKQLSDKQKE 275 + K+ ++ + L + K L K + + K ++ + + + Sbjct: 132 AMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEAR 191 Query: 276 VVRNNGILEQKNEDLNNIKIELEELNNQKAQNWTKN--LKEILDKKEKDKQNIEKQISNS 333 LE +++ L +KA + L++ L+ +I Sbjct: 192 QAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTL 251 Query: 334 QKTISKLNDEINDLKKELTNSNSNNSSIKTEIAEKENQIKTIKEEIEFKKQESQNLESDI 393 + + L +L+K L + + +++ +I E + ++ E + +SQ L ++ Sbjct: 252 EAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANR 311 Query: 394 NDLKTNILNQEELNKQLDSKIQSKQQEKQSKQQEIQAIKEENSKANDEIKNLENKNSGLN 453 L+ ++ E KQL+++ Q +++ + + Q+++ + + + K LE ++ L Sbjct: 312 QSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLE 371 Query: 454 KEIKSLNDTKTQIEQKILDVSNSIKNKKTNLENVTKELDSKVKELDELKEKNKNLSEETQ 513 ++ K ++ + + + + K + LE +L + K EL+E K +E Sbjct: 372 EQNKISEASRQSLRRDLDASREAKKQVEKALEEANSKLAALEKLNKELEESKKLTEKEKA 431 Query: 514 VLKNKIE 520 L+ K+E Sbjct: 432 ELQAKLE 438
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 64.3 bits (156), Expect = 9e-13 Identities = 64/368 (17%), Positives = 138/368 (37%) Query: 258 LNNLLDQLNKNTDQLNKNNNELENINKQIKETEDQIQSTKDKISEFKKEKQADIDKVNSE 317 + D+ + L N++L NK +K+ D++ E ++ + + S+ Sbjct: 55 VQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASK 114 Query: 318 IRNKEKEIRDLQTQLDQTNSQIDSLTQQIKDLEKQKQNSTSENNTLNEQLEKKKNELKQL 377 I+ E DL+ L+ + + + +IK LE +K + L + LE N Sbjct: 115 IQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTAD 174 Query: 378 TTQKESYLDSIKNSKQHKQDLQTQLDQAKKQEQHKQEQIKKLEKDLEILDKRIKRLKVEK 437 + + ++ + + +L+ L+ A +IK LE + L R L+ Sbjct: 175 SAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKAL 234 Query: 438 TGLASQIDELNKAKTSKEKLVNSLKQIIESQQNNLSTLERQYNSIKQTLDQNQQEITKKT 497 G + + + E +L+ + L + + + E Sbjct: 235 EGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALE 294 Query: 498 NELYSLNSQKQDLEKEVKKLTDQSSELNEKQDALNKEINKLDSKISTINSDKKTKKERLD 557 E L Q Q L + L E + L E KL+ + + +++ + LD Sbjct: 295 AEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLD 354 Query: 558 WLRGSVDHQNKELKKLKSEIKVSDSENFKLQLDIKNKQKEFDNLASQIELLDAQILTLKK 617 R + E +KL+ + K+S++ L+ D+ ++ + +E ++++ L+K Sbjct: 355 ASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQVEKALEEANSKLAALEK 414 Query: 618 ELKQEKAK 625 K+ + Sbjct: 415 LNKELEES 422 Score = 53.5 bits (128), Expect = 2e-09 Identities = 57/360 (15%), Positives = 131/360 (36%) Query: 78 DKFNKLKQEQKELIKKDSDQKQMISKLTRDLTNLKLESKTKNDLKIKSESELIKLKKTKK 137 + N LK + +L + K +LT +L+N K + + + + S++ +L+ K Sbjct: 64 IENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKA 123 Query: 138 HKDEIKDYFIKEIKNKESELVKKNNEINTTITEIESLKKELDQLNKNKDKKQQEIDTLKN 197 ++ + + +++ E L+K L+ +I TL+ Sbjct: 124 DLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEA 183 Query: 198 QINKDYLFLFELKTKISRHKKLEKELFELNKQINILNDSKTQKQLELNQQKAVLKEKQTQ 257 + EL+ + K + + ++ +L + T Sbjct: 184 EKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTA 243 Query: 258 LNNLLDQLNKNTDQLNKNNNELENINKQIKETEDQIQSTKDKISEFKKEKQADIDKVNSE 317 + + L L ELE + + + K +A+ + + Sbjct: 244 DSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQ 303 Query: 318 IRNKEKEIRDLQTQLDQTNSQIDSLTQQIKDLEKQKQNSTSENNTLNEQLEKKKNELKQL 377 + + L+ LD + L + + LE+Q + S + +L L+ + KQL Sbjct: 304 SQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQL 363 Query: 378 TTQKESYLDSIKNSKQHKQDLQTQLDQAKKQEQHKQEQIKKLEKDLEILDKRIKRLKVEK 437 + + + K S+ +Q L+ LD +++ ++ ++ +++ L L+K K L+ K Sbjct: 364 EAEHQKLEEQNKISEASRQSLRRDLDASREAKKQVEKALEEANSKLAALEKLNKELEESK 423 Score = 52.8 bits (126), Expect = 3e-09 Identities = 59/389 (15%), Positives = 154/389 (39%), Gaps = 14/389 (3%) Query: 279 LENINKQIKETEDQIQSTKDKISEFKKEKQADIDKVNSEIRNKEKEIRDLQTQLDQTNSQ 338 ++ + + + ++ +S K + D++ E+ N ++++R L + S+ Sbjct: 55 VQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASK 114 Query: 339 IDSLTQQIKDLEKQKQNSTSENNTLNEQLEKKKNELKQLTTQKESYLDSIKNSKQHKQDL 398 I L + DLEK + + + + + +++ + E L +K +++ + Sbjct: 115 IQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTAD 174 Query: 399 QTQLDQAKKQEQHKQEQIKKLEKDLEILDKRIKRLKVEKTGLASQIDELNKAKTSKEKLV 458 ++ + ++ + + +LEK LE + L ++ L K EK + Sbjct: 175 SAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKAL 234 Query: 459 NSLKQIIESQQNNLSTLERQYNSIKQTLDQNQQEITKKTNELYSLNSQKQDLEKEVKKLT 518 + + TLE + +++ + ++ + N + +++ + LE E L Sbjct: 235 EGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALE 294 Query: 519 DQSSELNEKQDALNKEINKLDSKISTINSDKKTKKERLDWLRGSVDHQNKELKKLKSEIK 578 + ++L + LN L + LD R + E +KL+ + K Sbjct: 295 AEKADLEHQSQVLNANRQSL--------------RRDLDASREAKKQLEAEHQKLEEQNK 340 Query: 579 VSDSENFKLQLDIKNKQKEFDNLASQIELLDAQILTLKKELKQEKAKNEKLVDKKKKIDS 638 +S++ L+ D+ ++ L ++ + L+ Q + + + + + KK+++ Sbjct: 341 ISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQVEK 400 Query: 639 AYESIQTLIKNIKTILKNIKSDFSELNKE 667 A E + + ++ + K ++ KE Sbjct: 401 ALEEANSKLAALEKLNKELEESKKLTEKE 429 Score = 50.8 bits (121), Expect = 2e-08 Identities = 54/371 (14%), Positives = 143/371 (38%) Query: 163 EINTTITEIESLKKELDQLNKNKDKKQQEIDTLKNQINKDYLFLFELKTKISRHKKLEKE 222 + + ++LK D+L + ++++ +++ + EL+ + + +K + Sbjct: 72 KNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEG 131 Query: 223 LFELNKQINILNDSKTQKQLELNQQKAVLKEKQTQLNNLLDQLNKNTDQLNKNNNELENI 282 + + + ++ L +KA L++ N + L LE Sbjct: 132 AMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEAR 191 Query: 283 NKQIKETEDQIQSTKDKISEFKKEKQADIDKVNSEIRNKEKEIRDLQTQLDQTNSQIDSL 342 ++++ + + S K +A+ + + + EK + +++I +L Sbjct: 192 QAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTL 251 Query: 343 TQQIKDLEKQKQNSTSENNTLNEQLEKKKNELKQLTTQKESYLDSIKNSKQHKQDLQTQL 402 + LE ++ ++K L +K + + + Q L Sbjct: 252 EAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANR 311 Query: 403 DQAKKQEQHKQEQIKKLEKDLEILDKRIKRLKVEKTGLASQIDELNKAKTSKEKLVNSLK 462 ++ +E K+LE + + L+++ K + + L +D +AK E L+ Sbjct: 312 QSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLE 371 Query: 463 QIIESQQNNLSTLERQYNSIKQTLDQNQQEITKKTNELYSLNSQKQDLEKEVKKLTDQSS 522 + + + + +L R ++ ++ Q ++ + + ++L +L ++LE+ K + + Sbjct: 372 EQNKISEASRQSLRRDLDASREAKKQVEKALEEANSKLAALEKLNKELEESKKLTEKEKA 431 Query: 523 ELNEKQDALNK 533 EL K +A K Sbjct: 432 ELQAKLEAEAK 442 Score = 34.3 bits (78), Expect = 0.002 Identities = 49/374 (13%), Positives = 123/374 (32%), Gaps = 3/374 (0%) Query: 23 VYKNIHNQRSFLNTHQNKVKELEKQLKSVSDDINTKENQLKVLL---LEDEKNFISSKDK 79 + + + N + L + + E +++ + E L+ + D + + + Sbjct: 90 LTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAE 149 Query: 80 FNKLKQEQKELIKKDSDQKQMISKLTRDLTNLKLESKTKNDLKIKSESELIKLKKTKKHK 139 L + +L K + + + L+ E + + E L Sbjct: 150 KAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTAD 209 Query: 140 DEIKDYFIKEIKNKESELVKKNNEINTTITEIESLKKELDQLNKNKDKKQQEIDTLKNQI 199 E + + + + ++ L K + L+ + Sbjct: 210 SAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKAL 269 Query: 200 NKDYLFLFELKTKISRHKKLEKELFELNKQINILNDSKTQKQLELNQQKAVLKEKQTQLN 259 F KI + + L + + + L + +E + QL Sbjct: 270 EGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLE 329 Query: 260 NLLDQLNKNTDQLNKNNNELENINKQIKETEDQIQSTKDKISEFKKEKQADIDKVNSEIR 319 +L + + L +E + Q+++ K+ E K +A + ++ Sbjct: 330 AEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLD 389 Query: 320 NKEKEIRDLQTQLDQTNSQIDSLTQQIKDLEKQKQNSTSENNTLNEQLEKKKNELKQLTT 379 + + ++ L++ NS++ +L + K+LE+ K+ + E L +LE + LK+ Sbjct: 390 ASREAKKQVEKALEEANSKLAALEKLNKELEESKKLTEKEKAELQAKLEAEAKALKEKLA 449 Query: 380 QKESYLDSIKNSKQ 393 ++ L ++ K Sbjct: 450 KQAEELAKLRAGKA 463
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 29.0 bits (64), Expect = 0.016 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 6/76 (7%) Query: 52 EKKEDKDKMDESTEEDKKEEKKKPENNKEELTFEKINNTNLGNFQPDPKKYNSVSQLEIK 111 E+K+ +K E+ E+ +K +K K E KEE + N NL N +P+ L Sbjct: 143 EQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANLENLTNAMSNPQ------NLSNN 196 Query: 112 KKIAEVLKTDYSNLTD 127 K ++E++K N D Sbjct: 197 KNLSELIKQQRENELD 212 Score = 27.8 bits (61), Expect = 0.033 Identities = 19/52 (36%), Positives = 23/52 (44%) Query: 43 QKEPEHNPNEKKEDKDKMDESTEEDKKEEKKKPENNKEELTFEKINNTNLGN 94 QK+ E KE K + E +KEE+ K N E LT N NL N Sbjct: 144 QKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANLENLTNAMSNPQNLSN 195
>SUBTILISIN#Subtilisin serine protease family (S8) signature. Length = 326 Score = 79.5 bits (196), Expect = 3e-18 Identities = 46/285 (16%), Positives = 101/285 (35%), Gaps = 55/285 (19%) Query: 271 TIGVIDTLFDKENTYFSDWVE----FENRLDENIPIKVEDYFHGTEVSSIIVDGHRLNPE 326 + V+DT D ++ + F + + + I + HGT V+ I Sbjct: 44 KVAVLDTGCDADHPDLKARIIGGRNFTDDDEGDPEIFKDYNGHGTHVAGTIAATE----- 98 Query: 327 LDDGCGHFKVRHFGVAK------------QGSFSSFTVLKEIEKIIKNNKDIKVWNLSLG 374 ++ GVA QGS +++ I I+ DI ++SLG Sbjct: 99 -NENGVV------GVAPEADLLIIKVLNKQGSGQYDWIIQGIYYAIEQKVDI--ISMSLG 149 Query: 375 SSKEINQNFISIEASFLDKIQAENNVIFVIA-GTNGPSNKK-NKIGSPADSINSLVVNSV 432 +++ + +++ + + ++ + A G G + + +++G P + V ++ Sbjct: 150 GPEDVPELHEAVKKAV------ASQILVMCAAGNEGDGDDRTDELGYPGCYNEVISVGAI 203 Query: 433 DFDNKPADYSRTGPVLSFFNKPDVSYYGGTYKKGIQVCSSFKQIYVTGTSYAAPWISRKL 492 +FD +++S + + P +GTS A P ++ L Sbjct: 204 NFDRHASEFSNSNNEVDLVA-PGEDILSTVPGGKYA--------TFSGTSMATPHVAGAL 254 Query: 493 CYLIEV------IGLSREVAKALIIHSATSWSNQDNINLLGYGIV 531 + ++ L+ A +I N + G G++ Sbjct: 255 ALIKQLANASFERDLTEPELYAQLIKRTIPLGNSPKME--GNGLL 297
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 87.7 bits (217), Expect = 6e-21 Identities = 48/253 (18%), Positives = 94/253 (37%), Gaps = 46/253 (18%) Query: 125 FYGFFVYPTAWVLAGMVRLFSGTLNPLLDKSSQLSYGISAIFAIFLTTLLIKGITLSFGW 184 + F P +L + ++G F+I + T +++GI Sbjct: 332 WLWFISQPLFKLLKWIHSFVG-------------NWG----FSIIIITFIVRGIMYPLTK 374 Query: 185 KSQINQEKMQDIQLKIADIQAKYKDKKDMQSKQKQQLEIQALYKKENMSQFSALAGSFAP 244 + KM+ +Q KI ++ + D KQ+ E+ ALYK E ++ Sbjct: 375 AQYTSMAKMRMLQPKIQAMRERLGDD-----KQRISQEMMALYKAEKVNPLGGCFPLLIQ 429 Query: 245 LPFLFAIYAIVRSTRALKIAAVGPIALIEGPW-QQITSGNYIYIIILAIYLPLQAVSMLL 303 +P A+Y ++ + L+ A W +++ + YI+ + M + Sbjct: 430 MPIFLALYYMLMGSVELRQAPF-------ALWIHDLSAQDPYYILPIL---------MGV 473 Query: 304 PTLLQMKKQKSITLTEAQKKSRKKQLIMQVVMMFVFIIIIVSVATGVCIYWIFSSVLQII 363 K + Q+K + M +F + + +G+ +Y+I S+++ II Sbjct: 474 TMFFIQKMSPTTVTDPMQQK-------IMTFMPVIFTVFFLWFPSGLVLYYIVSNLVTII 526 Query: 364 QTYAFYLYNEKRR 376 Q Y EKR Sbjct: 527 QQQLIYRGLEKRG 539