>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 377 bits (970), Expect = e-131 Identities = 168/406 (41%), Positives = 262/406 (64%), Gaps = 2/406 (0%) Query: 1 MPAFRFEAIDAAGRAQKGVIDADSARAARGQLRTQGLTPLVVEPAASATRGARSQRLAFG 60 M + ++A+DA G+ +G +ADSAR AR LR +GL PL V+ + + S L+ Sbjct: 1 MAQYHYQALDAQGKKCRGTQEADSARQARQLLRERGLVPLSVDENRGDQQKSGSTGLSLR 60 Query: 61 R--KLSQREQAILTRQLASLLIAGLPLDEALGVLTEQAERDYIRELMAAIRAEVLGGHSL 118 R +LS + A+LTRQLA+L+ A +PL+EAL + +Q+E+ ++ +LMAA+R++V+ GHSL Sbjct: 61 RKIRLSTSDLALLTRQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSL 120 Query: 119 ANALGQHPRDFPEIYRALVAAGEHTGKLGIVLSRLADYIEQSNALKQKILLAFTYPGIVT 178 A+A+ P F +Y A+VAAGE +G L VL+RLADY EQ ++ +I A YP ++T Sbjct: 121 ADAMKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVLT 180 Query: 179 LIAFGIVTFLLSYVVPQVVNVFASTKQQLPILTVVMMALSEFVRHWWWAILIAVALIVWF 238 ++A +V+ LLS VVP+VV F KQ LP+ T V+M +S+ VR + +L+A+ Sbjct: 181 VVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLALLAGFMA 240 Query: 239 VKATLSRAGPRLAFDRWVLTAPLAGKLVRGYNTVRFASTLGILTAAGVPILRALQAAGET 298 + L + R++F R +L PL G++ RG NT R+A TL IL A+ VP+L+A++ +G+ Sbjct: 241 FRVMLRQEKRRVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAMRISGDV 300 Query: 299 LSNRAMRANIDDAIVRVREGSALSRALNNVKTFPPVLVHLIRSGEATGDVTTMLDRAAEG 358 +SN R + A VREG +L +AL FPP++ H+I SGE +G++ +ML+RAA+ Sbjct: 301 MSNDYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMIASGERSGELDSMLERAADN 360 Query: 359 EARELERRTMFLTSLLEPLLILAMGGIVLVIVLAVMLPIIELNNMV 404 + RE + L EPLL+++M +VL IVLA++ PI++LN ++ Sbjct: 361 QDREFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPILQLNTLM 406
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 188 bits (480), Expect = 7e-65 Identities = 67/139 (48%), Positives = 92/139 (66%), Gaps = 3/139 (2%) Query: 11 AVRRQRGFTLIEIMVVVAILGILAALIVPKIMSRPDEARRIAAKQDIGTIMQALKLYRLD 70 A +QRGFTL+EIMVV+ I+G+LA+L+VP +M ++A + A DI + AL +Y+LD Sbjct: 3 ATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKLD 62 Query: 71 NGRYPTQEQGLNSLIQKPTTDPIPNNWKDGGYLERLPNDPWGNGYKYLNPGVHGEIDVFS 130 N YPT QGL SL++ PT P+ N+ GY++RLP DPWGN Y +NPG HG D+ S Sbjct: 63 NHHYPTTNQGLESLVEAPTLPPLAANYNKEGYIKRLPADPWGNDYVLVNPGEHGAYDLLS 122 Query: 131 YGADGKEGGDGNDTDIGSW 149 G DG+ G + DI +W Sbjct: 123 AGPDGEMGTED---DITNW 138
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 48.8 bits (116), Expect = 1e-09 Identities = 15/72 (20%), Positives = 27/72 (37%) Query: 41 RTRGFTLLEMLVVLVIAGLLVSLASLSLTRNPRTDLREEAQRIALLFETAGDEAQVRARP 100 R RGFTLLEM+++L++ G+ + L+ + + R + Sbjct: 2 RQRGFTLLEMMLILLLMGVSAGMVLLAFPASRDDSAAQTLARFEAQLRFVQQRGLQTGQF 61 Query: 101 IAWQPTAHGFQF 112 +QF Sbjct: 62 FGVSVHPDRWQF 73
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 28.3 bits (63), Expect = 0.006 Identities = 9/20 (45%), Positives = 15/20 (75%) Query: 13 RGFTMIEVLVALAIIAVALA 32 RGFT++E++V + II V + Sbjct: 8 RGFTLLEIMVVIVIIGVLAS 27
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 34.1 bits (78), Expect = 1e-04 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 5/58 (8%) Query: 13 RGFTLIELMIAIAIIAVVAILAWRGLDQIMRGRDKVAA--AMEDERVFAQMFDQMRID 68 RGFTL+E+M+ I II V+A L + +M ++K A+ D D ++D Sbjct: 8 RGFTLLEIMVVIVIIGVLASLV---VPNLMGNKEKADKQKAVSDIVALENALDMYKLD 62
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 125 bits (315), Expect = 3e-33 Identities = 84/398 (21%), Positives = 160/398 (40%), Gaps = 16/398 (4%) Query: 30 LALGTFMEVLDTSIANVAVPTISGSLGVATSEGTWVISSYSVASAIAVPLTGWLARRVGE 89 L + +F VL+ + NV++P I+ + WV +++ + +I + G L+ ++G Sbjct: 19 LCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGI 78 Query: 90 VRLFTLSVLAFTIASALCGFA-TNFETLIAFRLLQGLVSGPMVPLSQTILMRSYPPAKRG 148 RL ++ S + + F LI R +QG + L ++ R P RG Sbjct: 79 KRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRG 138 Query: 149 LALGLWAMTVIVAPIFGPLLGGWISDNYTWPWIFYINLPIGVFSATCAYFLLRGRETKTS 208 A GL V + GP +GG I+ W ++ I + + L ++ Sbjct: 139 KAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLL---KKEVRI 195 Query: 209 KQRIDAIGLALLVIGVSCLQMMLDLGKDRDWFNSTFIVALALIAVVSLAFMLVWEATEKE 268 K D G+ L+ +G+ + F +++ ++ +++V+S + + Sbjct: 196 KGHFDIKGIILMSVGIVFFML----------FTTSYSISFLIVSVLSFLIFVKHIRKVTD 245 Query: 269 PVVDLSLFKDRNFALGALIISFGFMAFFGSVVIFPLWLQTVMGYTAGKAGLATA-PVGLL 327 P VD L K+ F +G L F G V + P ++ V + + G P + Sbjct: 246 PFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMS 305 Query: 328 ALVLSPLIGRNMHRLDLRMVASFAFIVFAGVSLWNATFTLDVPFNHVILPRLVQGIGVAC 387 ++ + G + R V + + F VS A+F L+ + + + G++ Sbjct: 306 VIIFGYIGGILVDRRGPLYVLNIG-VTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSF 364 Query: 388 FFVPMTTITLSSISDERLASASGLSNFLRTLSGAIGTA 425 ++TI SS+ + + L NF LS G A Sbjct: 365 TKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIA 402 Score = 29.8 bits (67), Expect = 0.031 Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 6/115 (5%) Query: 62 GTWVISSYSVASAIAVPLTGWLARRVGEVRLFT----LSVLAFTIASALCGFATNFETLI 117 G+ +I +++ I + G L R G + + ++F AS L + F T+I Sbjct: 295 GSVIIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTII 354 Query: 118 AFRLLQGLVSGPMVPLSQTILMRSYPPAKRGLALGLWAMTVIVAPIFGPLLGGWI 172 +L GL V TI+ S + G + L T ++ G + G + Sbjct: 355 IVFVLGGLSFTKTV--ISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGL 407
>FLGMOTORFLIM#Flagellar motor switch protein FliM signature. Length = 344 Score = 275 bits (704), Expect = 3e-93 Identities = 81/326 (24%), Positives = 159/326 (48%), Gaps = 10/326 (3%) Query: 5 EFMSQEEVDALLKGV-TGETDAVDEQ--RDTSGVRPYNIATQERIVRGRMPGLEIINDRF 61 E +SQ+E+D LL + +G+ D + DT + Y+ ++ + +M L ++++ F Sbjct: 3 EVLSQDEIDQLLTAISSGDASIEDARPISDTRKITLYDFRRPDKFSKEQMRTLSLMHETF 62 Query: 62 ARLLRIGIFNFMRRTAEISVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPN 121 ARL + +R + V+ V Y EF R++P P+ L ++ + PL+G ++ DP+ Sbjct: 63 ARLTTTSLSAQLRSMVHVHVASVDQLTYEEFIRSIPTPSTLAVITMDPLKGNAVLEVDPS 122 Query: 122 LVFFVVDNLFGGDGRFHTRVEGRDFTATEQRIIGKLLNLVFEHYTTAWKSVRPLQFEFVR 181 + F ++D LFGG G+ RD T E ++ ++ + + +W V L+ + Sbjct: 123 ITFSIIDRLFGGTGQAAKVQ--RDLTDIENSVMEGVIVRILANVRESWTQVIDLRPRLGQ 180 Query: 182 SEMHTQFANVATPNEIVIVTQFSIEFGPTGGTLHICMPYSMIEPIRDVLSSPIQGEAL-- 239 E + QFA + P+E+V++ + G G ++ C+PY IEPI LSS ++ Sbjct: 181 IETNPQFAQIVPPSEMVVLVTLETKVGEEEGMMNFCIPYITIEPIISKLSSQFWFSSVRR 240 Query: 240 EVDRRWVRVLSQQVQAAEVELTANLAEISSTFEKILNLRAGDVLPLE---IEDTITAKVD 296 +++ VL ++ ++++ A + + + IL LR GD++ L + D + Sbjct: 241 SSTTQYMGVLRDKLSTVDMDVVAEVGSLRLSVRDILGLRVGDIIRLHDTHVGDPFVLSIG 300 Query: 297 GVPVMECGYGIFNGQYALRVQKMIGA 322 C G+ + A ++ + I + Sbjct: 301 NRKKFLCQPGVVGKKIAAQILERIES 326
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 133 bits (337), Expect = 4e-43 Identities = 75/132 (56%), Positives = 98/132 (74%), Gaps = 3/132 (2%) Query: 32 AAEEDPGMDD-WAAALAEQNEQPVQAGATGAGVFQPLSKAAASSTHNDIEMILDIPVKMT 90 + E +DD WA AL EQ ++ A VFQ L S DI++I+DIPVK+T Sbjct: 8 SDENTGALDDLWADALNEQKATTTKSAADA--VFQQLGGGDVSGAMQDIDLIMDIPVKLT 65 Query: 91 VELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVNDKFGIRLTDI 150 VELGRT++ I+ LL+L QGSVV LDG+AGEP+D+L+NG LIAQGEVVVV DK+G+R+TDI Sbjct: 66 VELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDI 125 Query: 151 ITPAERIRKLNR 162 ITP+ER+R+L+R Sbjct: 126 ITPSERMRRLSR 137
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 288 bits (739), Expect = e-101 Identities = 151/241 (62%), Positives = 195/241 (80%), Gaps = 4/241 (1%) Query: 12 VAPVLILCLAPALAYAQANGLPAFNASPGPHGGTTYSLSVQTMLLLTMLSFLPAMLLMMT 71 VAPVL+ + P LP + P P GG ++SL VQT++ +T L+F+PA+LLMMT Sbjct: 7 VAPVLLWLITPLAF----AQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMT 62 Query: 72 SFTRIIIVLSLLRQALGTATTPPNQVLVGLAMFLTFFVMSPVLDRAYNDGYKPFSDGSMP 131 SFTRIIIV LLR ALGT + PPNQVL+GLA+FLTFF+MSPV+D+ Y D Y+PFS+ + Sbjct: 63 SFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKIS 122 Query: 132 MEQAVQRGVAPFKTFMLKQTRETDLALFAKISKAAPMQGPEDVPLSLLVPAFVTSELKTG 191 M++A+++G P + FML+QTRE DL LFA+++ P+QGPE VP+ +L+PA+VTSELKT Sbjct: 123 MQEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVTSELKTA 182 Query: 192 FQIGFTVFIPFLIIDMVVASVLMSMGMMMVSPSTVSLPFKLMLFVLVDGWQLLIGSLAQS 251 FQIGFT+FIPFLIID+V+ASVLM++GMMMV P+T++LPFKLMLFVLVDGWQLL+GSLAQS Sbjct: 183 FQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQS 242 Query: 252 F 252 F Sbjct: 243 F 243
>cloacin#Cloacin signature. Length = 551 Score = 30.5 bits (68), Expect = 0.001 Identities = 16/39 (41%), Positives = 20/39 (51%) Query: 18 GSVSAFAAAGGNGGGHGAGGSGGNAGGMSGGHMSGQALS 56 G S G G GHG GG GN+GG SG + A++ Sbjct: 47 GGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVA 85
>MICOLLPTASE#Microbial collagenase metalloprotease (M9) signature. Length = 1104 Score = 28.9 bits (64), Expect = 0.046 Identities = 16/111 (14%), Positives = 33/111 (29%), Gaps = 13/111 (11%) Query: 204 AEQRARTAALNLSDYRNKKGVIDPERQSALQLQQVANLQDEMASATVTLNQVRQASRDNP 263 A RAR + D N+ D ++ + + + + + + Sbjct: 83 APSRARNNKIYTFDELNRMNYSD-------LVELI------KTISYENVPDLFNFNDGSY 129 Query: 264 QIPILENRISSLRDEIAKRNNQVTGGDRSLANKAAEYERLSLERDFADKQL 314 +R+ ++ + T D E+ R F +KQL Sbjct: 130 TFFSNRDRVQAIIYGLEDSGRTYTADDDKGIPTLVEFLRAGYYLGFYNKQL 180
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 49.7 bits (118), Expect = 2e-09 Identities = 54/199 (27%), Positives = 80/199 (40%), Gaps = 28/199 (14%) Query: 37 IDVRNALQLEAWLHRF-DDVYPIDLLIANAG----AASTLASSSDWEALDRTVIVNDTNF 91 DVR++ ++ R ++ PID+L+ AG S +WEA T VN T Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEA---TFSVNST-- 118 Query: 92 YGTLHAVLPVVERMRVRGYGQIAMVSSIAALRGMAISPAYCASKAAIKAYGDSVRPLLAR 151 G +A V + M R G I V S A AY +SKAA + + LA Sbjct: 119 -GVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAE 177 Query: 152 EGIVLSVVLPGFVKTSMSDVFPGDKPFIWSADKAARRIRAGLAAKRAEIAFPAMLAVGMR 211 I ++V PG +T M +W+ + A ++ G G+ Sbjct: 178 YNIRCNIVSPGSTETDMQWS-------LWADENGAEQVIKGSLET---------FKTGIP 221 Query: 212 LLNVL-PVRIADAILSRLS 229 L + P IADA+L +S Sbjct: 222 LKKLAKPSDIADAVLFLVS 240
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 40.0 bits (93), Expect = 7e-05 Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 5/121 (4%) Query: 2138 LVVGGTGGLGFASARWMIEHGARRLTLASRSGELGAAAREEVARWRDTLGVTVDVVSCDV 2197 + G G+G A AR + GA + + E+V + DV Sbjct: 12 FITGAAQGIGEAVARTLASQGAHIAAV-----DYNPEKLEKVVSSLKAEARHAEAFPADV 66 Query: 2198 TDAAAVDAMMAALVRRDVPLKGVLHSAMSIDDGLVRNLDDARMAAVLAPKVAGAWNLHRA 2257 D+AA+D + A + R P+ +++ A + GL+ +L D A + G +N R+ Sbjct: 67 RDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRS 126 Query: 2258 T 2258 Sbjct: 127 V 127
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 95.0 bits (236), Expect = 6e-26 Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 5/105 (4%) Query: 65 SIYFDFDSYSVKDEYQPLMQQHAQYLKSHPQRH--VLIQGNTDERGTSEYNLALGQKRAE 122 + F+F+ ++K E Q + Q L + + V++ G TD G+ YN L ++RA+ Sbjct: 220 DVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQ 279 Query: 123 AVRRAMALLGVNDSQMEAVSLGKEKPQATGHDEASWAQNRRADLV 167 +V + G+ ++ A +G+ P +RA L+ Sbjct: 280 SVVDYLISKGIPADKISARGMGESNPVTG---NTCDNVKQRAALI 321
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 131 bits (330), Expect = 1e-35 Identities = 75/409 (18%), Positives = 171/409 (41%), Gaps = 20/409 (4%) Query: 14 LIVLCLGVLMIVLDSTIVNVALPSISTDLHFTETALVWVVNAYLLTFGGCLLLGGRLGDL 73 LI LC+ VL+ ++NV+LP I+ D + + WV A++LTF + G+L D Sbjct: 16 LIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQ 75 Query: 74 YGQRRMFLAGLVVFTLASLACGLAQSQA-MLIAARAVQGLGGAVVSAVSLSLIMNLFTEP 132 G +R+ L G+++ S+ + S +LI AR +QG G A A+ + +++ + Sbjct: 76 LGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVM-VVVARYIPK 134 Query: 133 GERARAMGVYGFVCAGGGSIGVLLGGLLTSSLSWHWIFLVNLPIGVAVYAMCVALLPRVR 192 R +A G+ G + A G +G +GG++ + HW +L+ +P+ + + L + + Sbjct: 135 ENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYI--HWSYLLLIPMITIITVPFLMKLLK-K 191 Query: 193 APAGTARLDVAGAITVTASLMLAVYGIVGGNEAGWLSTQTVALIGAAVVLLALFIAIESR 252 D+ G I ++ ++ + ++ +++ + +V+ +F+ + Sbjct: 192 EVRIKGHFDIKGIILMSVGIVFFMLFT---------TSYSISFLIVSVLSFLIFVKHIRK 242 Query: 253 AAHPLMPLTLFAARNVALANAIAVLWAAAMFAWFFLSALYMQRVLGYGPLQVGLAFLPAN 312 P + L + + + + + M+ V ++G + Sbjct: 243 VTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPG 302 Query: 313 LIMAAFSLGLSARIVMRFGIRGPIAAGLLLAACGLALFSRAPVDGGFVWHVLPGMTLLGI 372 + + +V R G + G+ + S + + + + +LG Sbjct: 303 TMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLL-ETTSWFMTIIIVFVLG- 360 Query: 373 GAGVAFNPVLLA--AMNDVDPADSGLASGIVNTSFMMGGALGLAILASL 419 G++F +++ + + ++G ++N + + G+AI+ L Sbjct: 361 --GLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGL 407 Score = 29.1 bits (65), Expect = 0.041 Identities = 19/98 (19%), Positives = 34/98 (34%), Gaps = 1/98 (1%) Query: 66 LGGRLGDLYGQRRMFLAGLVVFTLASLACGLAQSQAMLIAARAVQG-LGGAVVSAVSLSL 124 +GG L D G + G+ +++ L + LGG + +S Sbjct: 312 IGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFTKTVIST 371 Query: 125 IMNLFTEPGERARAMGVYGFVCAGGGSIGVLLGGLLTS 162 I++ + E M + F G+ + G L S Sbjct: 372 IVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLS 409
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 178 bits (454), Expect = 1e-55 Identities = 90/350 (25%), Positives = 138/350 (39%), Gaps = 43/350 (12%) Query: 2 ILVTGGAGFIGANFVLDWLRASDEAVLNVDKLT--YAGNLRTL-QSLDGNPKHVFVRVDI 58 LVTG AGFIG + L A + V+ +D L Y +L+ L P F ++D+ Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQ-VVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 59 CDRDALDALLAEHKPRAVLHFAAESHVDRSIHGPADFVQTNVVGTFTLLEATRQYWNGLN 118 DR+ + L A V V S+ P + +N+ G +LE R Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHN----- 116 Query: 119 DADKAAFRFLHVSTDEVFGSLSATDPQFSETTPYA-PNSPYSATKAGSDHLVRAYHHTYG 177 L+ S+ V+G L+ P FS P S Y+ATK ++ + Y H YG Sbjct: 117 ----KIQHLLYASSSSVYG-LNRKMP-FSTDDSVDHPVSLYAATKKANELMAHTYSHLYG 170 Query: 178 LPVLTTNCSNNYGPYQFPEKLIPLMIANALAGKPLPVYGDGQNVRDWLYVGDHCSAIREV 237 LP YGP+ P+ + L GK + VY G+ RD+ Y+ D AI + Sbjct: 171 LPATGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRL 230 Query: 238 L------------------ARGVPGETYNVGGWNEKKNLEVVHTLCDLLDKARPKAAGSY 279 A P YN+G + + ++ + L D L +A + Sbjct: 231 QDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGI---EAKKNM 287 Query: 280 RDQITYVTDRPGHDRRYAIDARKLERELGWKPAETFETGLAKTVDWYLDN 329 +PG + D + L +G+ P T + G+ V+WY D Sbjct: 288 LPL------QPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDF 331
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 44.8 bits (106), Expect = 2e-07 Identities = 43/199 (21%), Positives = 70/199 (35%), Gaps = 57/199 (28%) Query: 11 TILVTGVNGQVGFELLRSLQGLG-RVVACD-------------RSML-----------DL 45 LVTG G +GF + + L G +VV D R L DL Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 46 SDLDRVRSVVRELKPSIIVNPAAYTAVDKAETDVDAARRLNVEVPRAFAE---------- 95 +D + + + + A R ++E P A+A+ Sbjct: 62 ADREGMTDLFASGHFERVFISPH-----------RLAVRYSLENPHAYADSNLTGFLNIL 110 Query: 96 EAARLGA--ALVHYSTDYVFDGTKEGAYVETDATN-PQNVYGLTKLEGEQAIAATGCAHL 152 E R L++ S+ V+ ++ + D+ + P ++Y TK E + A +HL Sbjct: 111 EGCRHNKIQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANE--LMAHTYSHL 168 Query: 153 ------ILRTSWVYGRRGK 165 LR VYG G+ Sbjct: 169 YGLPATGLRFFTVYGPWGR 187
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 97.5 bits (243), Expect = 6e-25 Identities = 74/359 (20%), Positives = 122/359 (33%), Gaps = 60/359 (16%) Query: 29 MTVAIITGITGQDGAYLAELLLEKGYTVYG-----TYRRTSSVNFWRIDELGVSNHPDLH 83 M ++TG G G ++++ LLE G+ V G Y S + L + P Sbjct: 1 MKY-LVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVS----LKQARLELLAQPGFQ 55 Query: 84 LVEYDLTDLGASIRLLQTTQATEVYNLAAQSFVGVSFDQPATTAEITGIGALNLLEAIRT 143 + DL D L + V+ + V S + P A+ G LN+LE R Sbjct: 56 FHKIDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRH 115 Query: 144 VNPAIRFYQASTSEMFGKVQAVPQVESTPF-YPRSPYGVAKLYAHWMTINYRESYNIFGC 202 AS+S ++G + +P +P S Y K M Y Y + Sbjct: 116 NKIQ-HLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPAT 174 Query: 203 SGILFNHESPLRGR-EFVTRKITDSLAKIRLGK-LDVLELGNLDAKRDWGYAKEYVEGMW 260 F P GR + K T + GK +DV G + KRD+ Y + E + Sbjct: 175 GLRFFTVYGP-WGRPDMALFKFTK---AMLEGKSIDVYNYGKM--KRDFTYIDDIAEAII 228 Query: 261 RMLQAERPDT-------------------YVLATNRTETVRDFVSMAAQAAGIELAWQGA 301 R+ Y + + + D++ A GIE Sbjct: 229 RLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIE------ 282 Query: 302 GENETGVDTRTGKAVVKVSPKFYRPAEVDLLIGNPEKASKELGWVPKTTLEQLCQMMVE 360 A + P +P +V + + + +G+ P+TT++ + V Sbjct: 283 -------------AKKNMLPL--QPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVN 326
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 97.9 bits (244), Expect = 9e-26 Identities = 59/284 (20%), Positives = 112/284 (39%), Gaps = 41/284 (14%) Query: 3 KVFVTGLDGFTGRYMAEELIRSGHEVCGI--------------VHKPVAAAPWRTHVCDL 48 K VTG GF G ++++ L+ +GH+V GI + +A ++ H DL Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 49 LDTDALVRVLSDEKPDAVVHLAAIAFVQH--GDVGAIYQTNVVGTRNLLDALTRAACQPR 106 D + + + + + V V++ + A +N+ G N+L+ + + Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHN--KIQ 119 Query: 107 AVLLASSANVYG-NSDREIIDESTAPAPANDYAISKLAMEMVARMWQD--KLPIVIVRPF 163 +L ASS++VYG N + + P + YA +K A E++A + LP +R F Sbjct: 120 HLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFF 179 Query: 164 NYTGVGQDERFLLPKIVRHFSARAERIEL-GNLNVVRDFSDVRMVVAAYRKLIEA----- 217 G L K + + I++ + RDF+ + + A +L + Sbjct: 180 TVYGPWGRPDMALFKFTKAM-LEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPHAD 238 Query: 218 -------------DFAGRTFNVCSGIGYSLQDVLATVQELSGHE 248 R +N+ + L D + +++ G E Sbjct: 239 TQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIE 282
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 39.3 bits (91), Expect = 1e-04 Identities = 28/127 (22%), Positives = 57/127 (44%), Gaps = 9/127 (7%) Query: 224 DFVSARTAELAAQVESLSARLADAEQRERDAVELVRRTEVQKVLEEHEAKHQELERLNKE 283 + A A + A+ E L RLA AE++ R E +K +E E + +E+ER E Sbjct: 114 ELAHANNAAMQAEDERL--RLAKAEEKARKEAE-----AAEKAFQEAEQRRKEIEREKAE 166 Query: 284 LMRQVEVMES--RRAEVEHDHKRRHKDAENQIAELRSALSGRDVMAQQASHRAELVEQQY 341 RQ+++ E+ +R + + + A+ +++ +S + D + + R Sbjct: 167 TERQLKLAEAEEKRLAALSEEAKAVEIAQKKLSAAQSEVVKMDGEIKTLNSRLSSSIHAR 226 Query: 342 QAVTQSM 348 A +++ Sbjct: 227 DAEMKTL 233
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 27.2 bits (60), Expect = 0.009 Identities = 8/38 (21%), Positives = 10/38 (26%), Gaps = 5/38 (13%) Query: 5 RVCVLRNLPASDP-----RWYKYVWQIWTPDSPLESAE 37 + VL +DP W Y W S Sbjct: 72 QFLVLEARDGADPAPADDGWSGYRWLPLRAGRVATSGS 109
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 46.0 bits (109), Expect = 2e-07 Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 7/139 (5%) Query: 35 VLDGVDSVIYALVLIPALTELLPASGIAATPANLGMYGSILFALFLIGWGLSFIWGPLAD 94 LD V + VL L +L+ ++ + A YG +L L+ + + + G L+D Sbjct: 15 ALDAVGIGLIMPVLPGLLRDLVHSNDVTAH------YGILLALYALMQFACAPVLGALSD 68 Query: 95 RFGRVRTLAASILIYSVFTGAAAFVHDVWALAACRLIAGIGVGGEWALAGTYVAESWPED 154 RFGR L S+ +V A +W L R++AGI G A+AG Y+A+ D Sbjct: 69 RFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGI-TGATGAVAGAYIADITDGD 127 Query: 155 RRKMGAGYLQTGYYFGFFI 173 R G++ + FG Sbjct: 128 ERARHFGFMSACFGFGMVA 146
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 42.1 bits (99), Expect = 3e-06 Identities = 73/374 (19%), Positives = 126/374 (33%), Gaps = 26/374 (6%) Query: 10 RPGGSAALPLLALAAGAFGIGTTEFSPMGLLPVIADGVHVSIPQA---GMLISAYAIGVM 66 +P + L +A A GIG M +LP + + S G+L++ YA+ Sbjct: 2 KPNRPLIVILSTVALDAVGIGLI----MPVLPGLLRDLVHSNDVTAHYGILLALYALMQF 57 Query: 67 VGAPLMTLLLARWSRRSALIALMSIFTIGNLLSAVAPDYTTLLLARLVTSLNHGAFFGLG 126 AP++ L R+ RR L+ ++ + + A AP L + R+V + G Sbjct: 58 ACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAG 117 Query: 127 SVVAASLVPREKQASAVATMFMGLTIANVGGVPAATWLGQIIGWRMSFAATAGLGLIAIA 186 + + A + +++A M V G +G F A A L + Sbjct: 118 AYI-ADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGG-FSPHAPFFAAAALNGLNFL 175 Query: 187 GLFAALPKGEAGKMPDLRAELSVLTRPVVLGALGTTVLGAGAMF-----------TLYTY 235 LP+ G+ LR E T V A+F L+ Sbjct: 176 TGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVI 235 Query: 236 VAPTLEHLTGATPGFVTAMLVLIGVGFSIGNIAGGRLADRSLDGTLIGFLLLLIATMAAF 295 H T G A ++ + G +A R + + +L +IA + Sbjct: 236 FGEDRFHWDATTIGISLAAFGILHSLAQA--MITGPVAARLGERRAL--MLGMIADGTGY 291 Query: 296 PLLATTHAGAGVTLLVWGIATFAVVPPLQMRVM--RAAHEAPGLASAVNIGAFNLGNAVG 353 LLA G ++ +A+ + P ++ + E G +L + VG Sbjct: 292 ILLAFATRGWMAFPIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVG 351 Query: 354 AAAGGAAISAGFGY 367 A +A Sbjct: 352 PLLFTAIYAASITT 365
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 32.3 bits (73), Expect = 0.003 Identities = 26/116 (22%), Positives = 35/116 (30%), Gaps = 6/116 (5%) Query: 189 AAEKEPVAPLPEPAPTPQGEPLKMTTPVVPTPPAAPVPLSAPGVAPGSGANAVPAAASAV 248 A + P A P P P + EP P P + P P V Sbjct: 53 ADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIE--KPKPKPKPKPKPVKKVQEQP 110 Query: 249 A---APAAMRAAAPTAASG-AGAVSGAAPASAPAPASAGGSAPAPASAAAPALAPK 300 P R A+P + A S A A+ P ++ S P S P + Sbjct: 111 KRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRALSRNQPQYPAR 166
>ARGDEIMINASE#Bacterial arginine deiminase signature. Length = 409 Score = 30.2 bits (68), Expect = 0.021 Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 6/47 (12%) Query: 182 QVDRIVDKVPRVDIPGDRVHFV--VEAGRPFYVEPL----FTRDPAA 222 + +++ V ++ V F ++P+ FTRDP A Sbjct: 121 MISKMISGVVTEELKNYTSSLDDLVNGANLFIIDPMPNVLFTRDPFA 167
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 49.4 bits (118), Expect = 2e-08 Identities = 81/381 (21%), Positives = 144/381 (37%), Gaps = 47/381 (12%) Query: 32 PSAQLLATFGTFAAAF-LVRPLGGMVFGPLGDRIGRQRVLAATMIMMAVGTFAIGLIPSY 90 S + A +G A + L++ V G L DR GR+ VL ++ AV + P Sbjct: 37 HSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFL 96 Query: 91 ASIGIMAPILLLVARLVQGFSTGGEYGGAATFIAEFSTDKRR----GFMGSFLEFGTLIG 146 +L + R+V G TG A +IA+ + R GFM + FG + G Sbjct: 97 W--------VLYIGRIVAGI-TGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAG 147 Query: 147 YVLGAGVVALLTASLSQEALLSWGWRVPFLIAGPLGLIG-LYIRMKLEETPAFKRQAEER 205 VLG G++ + PF A L + L L E+ +R+ R Sbjct: 148 PVLG-GLMGGFSP------------HAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRR 194 Query: 206 EAQDKAVPKARFRETLLRNWRALLLCVGLVLIFNVTDYMVLSYLPSFMSSTLHFDESH-S 264 EA + P A FR A L+ V ++ L + F H+D + Sbjct: 195 EALN---PLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVI--FGEDRFHWDATTIG 249 Query: 265 LVLVLIVMVLMMPMTLYAGRLSDKVGRKPVMLAGCVGLLVLSIPSLMLIHTGTTASVFGG 324 + L ++ + + G ++ ++G + ++ G ++ +L+ T G Sbjct: 250 ISLAAFGILHSLAQAMITGPVAARLGERRALMLG----MIADGTGYILLAFATR----GW 301 Query: 325 LLILGVLLSCFTGVMPSALPALFPTEI---RYGALAIGFNVSVSLFGGTT-PLVTAWLVD 380 + ++L G+ AL A+ ++ R G L G +++ PL+ + Sbjct: 302 MAFPIMVLLASGGIGMPALQAMLSRQVDEERQGQLQ-GSLAALTSLTSIVGPLLFTAIYA 360 Query: 381 VTHNLMMPAYYMMGAALIGIV 401 + ++ GAAL + Sbjct: 361 ASITTWNGWAWIAGAALYLLC 381 Score = 34.0 bits (78), Expect = 0.001 Identities = 25/118 (21%), Positives = 50/118 (42%), Gaps = 11/118 (9%) Query: 228 LLLCVGLVLIFNVTDYMVLSYLPSFMSSTLHFDESHSLVLVLIVMVLMMPMTLYAGRLSD 287 L VG+ LI V ++ + S + +H +L+ + ++ G LSD Sbjct: 15 ALDAVGIGLIMPVLPGLLRDLVHSNDVT------AHYGILLALYALMQFACAPVLGALSD 68 Query: 288 KVGRKPVMLAGCVGLLVLSIPSLMLIHTGTTASVFGGLLILGVLLSCFTGVMPSALPA 345 + GR+PV+ V L ++ ++ ++ G ++ G+ + TG + A A Sbjct: 69 RFGRRPVL---LVSLAGAAVDYAIMATAPFLWVLYIGRIVAGI--TGATGAVAGAYIA 121
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.8 bits (67), Expect = 0.011 Identities = 14/70 (20%), Positives = 33/70 (47%), Gaps = 14/70 (20%) Query: 146 VVAAAPGVVVYAGNGLRGYGNLIILKHNADYLTAYAHNRALLVKEGQSVTQGQSIAEM-- 203 +VA A G + ++G +K + + + ++VKEG+SV +G + ++ Sbjct: 82 IVATANGKLTHSGR-------SKEIKPIENSIV-----KEIIVKEGESVRKGDVLLKLTA 129 Query: 204 GNSDSDRVAL 213 +++D + Sbjct: 130 LGAEADTLKT 139
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.3 bits (65), Expect = 0.048 Identities = 24/117 (20%), Positives = 37/117 (31%), Gaps = 16/117 (13%) Query: 226 FDEYGEPRSAPPGDEMVRFLQRMCGYFLTGS--------TRFEFVFLLFGGGANGKSTFL 277 +R+LQ + Y L G +F++ +L G G GKST + Sbjct: 554 LVHVLGKTPDDYKPRRLRYLQLVGKYILMGHVARVMEPGCKFDYSVVLEGTGGIGKSTLI 613 Query: 278 RVLREILGDYFVSVAVETFLQSAHDQHPTGMAHIEGARLAACGELPDNRSWNSQRVK 334 L +G F S I G E+ R +++ VK Sbjct: 614 NTL---VGLDFFSDTHFDI-----GTGKDSYEQIAGIVAYELSEMTAFRRADAEAVK 662
>PF05272#Virulence-associated E family protein Length = 892 Score = 32.0 bits (72), Expect = 3e-04 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%) Query: 47 SLSIHFERGNWRCFACGEAGGDALELYRRARGLSFAQAAREL---DALATVANI 97 S ++ G W F+ GE+G D L+LY GL ++AA ++ + L +VA I Sbjct: 52 SCKVNVTTGKWCDFSTGESGRDLLDLYAEIHGLKVSKAAAQVAREEGLESVAGI 105
>PERTACTIN#Pertactin signature. Length = 922 Score = 31.6 bits (71), Expect = 0.011 Identities = 44/177 (24%), Positives = 66/177 (37%), Gaps = 19/177 (10%) Query: 322 LTRAGLKAGGALSDGIALGLRLGFDSGSTLDYVYRNRAQGRLGIGALIDRTY-LD-SPGW 379 L RA ++ G A + G G + + G G L+D Y +D S Sbjct: 253 LQRATIRRGDAPAGGAVPGGAVPGGAVPG-------------GFGPLLDGWYGVDVSDST 299 Query: 380 VGIRQRKVHLQELIGAAIGRLRGNGTPVRIVDIAAGHGRYVLDAIALAAERDGAAPDDIT 439 V + Q V +L GAAI RG V ++A HG + A+P IT Sbjct: 300 VDLAQSIVEAPQL-GAAIRAGRGARVTVSGGSLSAPHGNVIETGGGARRFPPPASPLSIT 358 Query: 440 LRDYSPPNVEAGRVLIAQRGLEPIARFERGDAFDEASLATLEPRPTLAIVSGLYELF 496 L+ + GR L+ + EP+ G A + + E P SG ++ Sbjct: 359 LQAGARAQ---GRALLYRVLPEPVKLTLAGGAQGQGDIVATELPPIPGASSGPLDVA 412
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 28.0 bits (62), Expect = 0.018 Identities = 34/146 (23%), Positives = 53/146 (36%), Gaps = 14/146 (9%) Query: 18 DAGAWALAAALVAAGAGGWVATGWAAPTLA-RVLLAIVSTGSGIAALWYAVRIAIDRRLF 76 D A A + G V G + +A R + ++ + + AV +AI F Sbjct: 264 DTRTKAAAGVELTTKVLGNVGKGISQYIIAQRAAQGLSTSAAAAGLIASAVTLAISPLSF 323 Query: 77 AALARAVDGAGSID-----------DGLAALDRALADLGWIDAAKVG-RTLDARVRGAVG 124 ++A A I+ DG + L + G IDA+ T+ A V + Sbjct: 324 LSIADKFKRANKIEEYSQRFKKLGYDGDSLLAAFHKETGAIDASLTTISTVLASVSSGIS 383 Query: 125 LCRAAVLV-AIVQWLVVGIAVAVSPI 149 LV A V LV + +S I Sbjct: 384 AAATTSLVGAPVSALVGAVTGIISGI 409
>TYPE3OMOPROT#Type III secretion system outer membrane O protein family signature. Length = 303 Score = 33.4 bits (76), Expect = 0.002 Identities = 23/56 (41%), Positives = 27/56 (48%), Gaps = 8/56 (14%) Query: 488 DALRHCRPRRAGDVVTADAGHLFVFLFACEPADAEDALARIFEVPVDTLSDRVVCL 543 D L H P AG V+A A HL V A A R FE+PV LS R +C+ Sbjct: 58 DWLEHVSPALAGAAVSAGAEHLVVPWLA--------ATERPFELPVPHLSCRRLCV 105
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 29.8 bits (66), Expect = 0.022 Identities = 30/142 (21%), Positives = 51/142 (35%), Gaps = 17/142 (11%) Query: 204 SAHAQAMPQAAAPHAATAAPASAAARADTRSRRADAAWLVVLYGAPGFGYIITATFLPVI 263 +A ++ AAA A A A A +A+ ++R+ A Y P G ++ Sbjct: 208 TAAKASIEAAAANKAREQAAAEAKRKAEEQARQQAAIRAANTYAMPANGSVVA----TAA 263 Query: 264 ARAALPAASPWPDLFWPMFGAALIVGAITAARLPGHWDNRLLLAAGCATQALGIAAGIVW 323 R + A L + A ++G + A P ++A G A+ W Sbjct: 264 GRGLIQVAQGAASLAQAISDAIAVLGRV-LASAPS------VMAVGFASLTYSSRTAEQW 316 Query: 324 PNA------AGFSVGSALLGLP 339 + + +A LGLP Sbjct: 317 QDQTPDSVRYALGMDAAKLGLP 338
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 107 bits (267), Expect = 3e-30 Identities = 80/254 (31%), Positives = 123/254 (48%), Gaps = 14/254 (5%) Query: 4 LTGKVAIVTGASKGIGAAIAKALADEGAAVV-VNYASSKAGADAVVSAITEAGGRAVAVG 62 + GK+A +TGA++GIG A+A+ LA +GA + V+Y K + VVS++ A A Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKL--EKVVSSLKAEARHAEAFP 63 Query: 63 GDVSKAADAQRIVDTAIDTYGRLDVLVNNSGVYEFAPIEAITEEHYRRQFDTNVFGVLLT 122 DV +A I G +D+LVN +GV I ++++E + F N GV Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 123 TQAAVKHL--GEGASIINISSVVTSITPPASAVYSGTKGAVDAITGVLALELGPRKIRVN 180 +++ K++ SI+ + S + + A Y+ +K A T L LEL IR N Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCN 183 Query: 181 AINPGMIVTEGTHS--------AGIIGSDLEAQVLGQTPLGRLGEPNDIASVAVFLASDD 232 ++PG T+ S +I LE G PL +L +P+DIA +FL S Sbjct: 184 IVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTG-IPLKKLAKPSDIADAVLFLVSGQ 242 Query: 233 ARWMTGEHLVVSGG 246 A +T +L V GG Sbjct: 243 AGHITMHNLCVDGG 256
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 29.8 bits (67), Expect = 0.016 Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 4/88 (4%) Query: 201 MNWLSSGTKFDAIVSN---NDEMAIGAINALKAARKLTPKTVVAGIDATPDGLAAMKAGE 257 W+++G D +V++ DE A + +K AR P V++ + + A + G Sbjct: 40 WRWIAAGD-GDLVVTDVVMPDENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGA 98 Query: 258 LKVSVYQNATGQGAQAVAAALKLAKKQP 285 + + AL K++P Sbjct: 99 YDYLPKPFDLTELIGIIGRALAEPKRRP 126
>SOPEPROTEIN#Salmonella type III secretion SopE effector protein signature. Length = 239 Score = 31.2 bits (70), Expect = 0.004 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 8/52 (15%) Query: 148 IPPFIATLGTMVAARGFAKWFTNGMPVSMLTDPFAAIGAGANPVIIFLVVAA 199 I PF+ +G AA+ G+P + D F GAGANP I L+ +A Sbjct: 136 IAPFLQEIGE--AAK------NAGLPGTTKNDVFTPSGAGANPFITPLISSA 179
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 71.4 bits (175), Expect = 9e-15 Identities = 66/277 (23%), Positives = 99/277 (35%), Gaps = 76/277 (27%) Query: 478 VMGHVDHGKTSLLDHIRRAKVAAGEAG------------------GITQHIGAYHVDTPR 519 V+ HVD GKT+L + + A E G GIT G Sbjct: 8 VLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWEN 67 Query: 520 GVITFLDTPGHEAFTAMRARGAKATDIVVLVVAADDGVMPQTKEAIAHAKAGGVPIVVAI 579 + +DTPGH F A R D +L+++A DGV QT+ + G+P + I Sbjct: 68 TKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFI 127 Query: 580 NKIDKPEANPDRVKQE----LVAEGVV-----------------PEEYG----------- 607 NKID+ + V Q+ L AE V+ E++ Sbjct: 128 NKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEGNDDLLE 187 Query: 608 ----GDSP-----------------FVPV---SAKTGAGIDDLLENVLLQAEVLELKAPV 643 G S PV SAK GID+L+E + + Sbjct: 188 KYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVIT--NKFYSSTHRG 245 Query: 644 EAPAKGIVIEAKLDKGKGPVATILVQSGTLNRGDIVL 680 ++ G V + + + + +A I + SG L+ D V Sbjct: 246 QSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVR 282
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 131 bits (330), Expect = 3e-35 Identities = 84/396 (21%), Positives = 157/396 (39%), Gaps = 16/396 (4%) Query: 27 VFMNVLDTSIANVAIPTISGDLGVSSDQGTWVITSFAVANAISVPLTGWLTDRFGQVRLF 86 F +VL+ + NV++P I+ D WV T+F + +I + G L+D+ G RL Sbjct: 23 SFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLL 82 Query: 87 LASIILFVISSWMCGLSPN-LPFLLGSRVLQGAVAGPMIPLSQALLLSSYPRAKAPMALA 145 L II+ S + + + L+ +R +QGA A L ++ P+ A Sbjct: 83 LFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFG 142 Query: 146 LWAMTTLIAPVAGPILGGWISDNYSWPWIFYVNIPVGIAAAAATWMIYRNRESAVRRAPI 205 L + GP +GG I+ W ++ IP+ I +++ ++ + Sbjct: 143 LIGSIVAMGEGVGPAIGGMIAHYIHWSYLL--LIPM-ITIITVPFLMKLLKKEVRIKGHF 199 Query: 206 DGVGLALLVVWVGSLQIMLDKGKDLDWFASTTIVVLALTAVIAFAFFVIWELTAEHPVVD 265 D G+ L+ VG + ML F ++ + + +V++F FV P VD Sbjct: 200 DIKGIILMS--VGIVFFML--------FTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVD 249 Query: 266 LSLFRIRNFTGGTVALSIGYGLYFGNLVLLPLWLQTQIGYTATDAG-LVMAPVGLFAILL 324 L + F G + I +G G + ++P ++ + + G +++ P + I+ Sbjct: 250 PGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIF 309 Query: 325 SPLTGKYLPRTDPRFISTASFLTFALCFWMRSRYTTGVDEWSLTLPTLVQGIAMAGFFIP 384 + G + R P ++ ++ F S + + V G ++ Sbjct: 310 GYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLG-GLSFTKTV 368 Query: 385 LVSITLSGLPGPRIPAASGLSNFVRIMCGGIGTSIF 420 + +I S L A L NF + G G +I Sbjct: 369 ISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIV 404
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 75.6 bits (186), Expect = 5e-17 Identities = 42/270 (15%), Positives = 89/270 (32%), Gaps = 28/270 (10%) Query: 93 ADSQVALQQAEANLAQTVRQVRGLFVNDDQYRAQVALRQSDLSKAQDDLRRRLAVAQTGA 152 + Q Q E NL + + + ++Y + +S L L + A+A+ Sbjct: 196 STWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSS-LLHKQAIAKHAV 254 Query: 153 VSQE--------EISHARDAVKAAQASVDAAQQQLASNRALTANTTIASHPNVMAAAAKV 204 + QE E+ + ++ ++ + +A+++ L N + + Sbjct: 255 LEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLL 314 Query: 205 RD----AYLANARNVLPAPVTGYVAKRSVQ-VGQRVSPGNPLMSVVPLNAV-WVDANFKE 258 +V+ APV+ V + V G V+ LM +VP + V A + Sbjct: 315 TLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQN 374 Query: 259 VQLKHMRIGQPVELTADIYGSSVTYH--GKVVGFSAGTGSAFSLLPAQNATGNWIKVVQR 316 + + +GQ + + + + + GKV + G V+ Sbjct: 375 KDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDA-------IEDQRLGLVFNVIIS 427 Query: 317 LPVRIELDPKDLDKHPLRIGLSMQVDVDIK 346 + + + M V +IK Sbjct: 428 IEENCLST----GNKNIPLSSGMAVTAEIK 453 Score = 48.3 bits (115), Expect = 3e-08 Identities = 26/161 (16%), Positives = 56/161 (34%), Gaps = 21/161 (13%) Query: 55 VNGNVVQITPQVTGTVIAVKADDTQTVKAGDPLVVLDPADSQVALQQAEANLAQT----- 109 +G +I P V + + ++V+ GD L+ L ++ + +++L Q Sbjct: 92 HSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQT 151 Query: 110 ----------VRQVRGLFVNDDQYRAQVA----LRQSDLSKAQ-DDLRRRLAVAQ-TGAV 153 + ++ L + D+ Y V+ LR + L K Q + + + Sbjct: 152 RYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDK 211 Query: 154 SQEEISHARDAVKAAQASVDAAQQQLASNRALTANTTIASH 194 + E + + + +L +L IA H Sbjct: 212 KRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKH 252
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 167 bits (424), Expect = 1e-46 Identities = 99/435 (22%), Positives = 171/435 (39%), Gaps = 62/435 (14%) Query: 5 LRNIAIIAHVDHGKTTLVDQLLRQSGTFRDNQQIAE--RVMDSNDIEKERGITILAKNCA 62 + NI ++AHVD GKTTL + LL SG + + + D+ +E++RGITI + Sbjct: 3 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITS 62 Query: 63 VEYEGTHVNIVDTPGHADFGGEVERVLSMVDSVLLLVDAVEGPMPQTRFVTKKALALGLK 122 ++E T VNI+DTPGH DF EV R LS++D +LL+ A +G QTR + +G+ Sbjct: 63 FQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIP 122 Query: 123 PIVVVNKIDRPGARIDWV-------------INQTFDLFDKLGATE----EQLDFPIV-- 163 I +NKID+ G + V I Q +L+ + T EQ D I Sbjct: 123 TIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEGN 182 Query: 164 -----------------YASGLNGY---ASLDP-----AAREGDMRPLFEAILEHVPVRP 198 + SL P A + L E I Sbjct: 183 DDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSST 242 Query: 199 ADPEAPLQLQITSLDYSTYVGRIGVGRITRGRIKPGQPVVMRFGPEGDVLNRKINQVLSF 258 ++ L ++ ++YS R+ R+ G + V R + + KI ++ + Sbjct: 243 HRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSV--RISEKEKI---KITEMYTS 297 Query: 259 KGLERVQVESAEAGDIVLINGIEDVGIGATICAVDTPEALPMITVDEPTLTMNFLVNSSP 318 E +++ A +G+IV++ E + + + + I P L + Sbjct: 298 INGELCKIDKAYSGEIVILQN-EFLKLNSVLGDTKLLPQRERIENPLPLLQTTVEPSKPQ 356 Query: 319 LAGREGKFVTSRQIRDRLMKELNHNVALRVKDTGDETVFEVSGRGELHLTILVENMRRE- 377 + D L++ V E + +S G++ + + ++ + Sbjct: 357 QREMLLDALLEISDSDPLLR-------YYVDSATHEII--LSFLGKVQMEVTCALLQEKY 407 Query: 378 GYELAVSRPRVVMQE 392 E+ + P V+ E Sbjct: 408 HVEIEIKEPTVIYME 422 Score = 34.4 bits (79), Expect = 0.001 Identities = 16/100 (16%), Positives = 32/100 (32%), Gaps = 1/100 (1%) Query: 387 RVVMQEIDGVRHEPYELLTVDVEDEHQGGVMEELGRRKGEMLDMASDGRGRTRLEYKISA 446 V+++ EPY + E+ + + ++D L +I A Sbjct: 525 EQVLKKAGTELLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVD-TQLKNNEVILSGEIPA 583 Query: 447 RGLIGFQSEFLTLTRGTGLMSHIFDSYAPVKDGSVFERRN 486 R + ++S+ T G + Y V + R Sbjct: 584 RCIQEYRSDLTFFTNGRSVCLTELKGYHVTTGEPVCQPRR 623
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 32.0 bits (72), Expect = 0.006 Identities = 28/165 (16%), Positives = 49/165 (29%), Gaps = 26/165 (15%) Query: 75 ATIDTEAKAGA-----AEAAAGAAEVKPAAAPAAAAAPAAQPAAATASSSAAASPAAAKL 129 AT++ E KA E ++V P + P A+PA + P + Sbjct: 1104 ATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQS--- 1160 Query: 130 LAEKGLSTGDVAGSGRDGRVTKGDALAAGSAPKAAPAAAPAKTAAAKPALPEVKVPASAA 189 T A + + + T + + + T + PE PA+ Sbjct: 1161 ------QTNTTADTEQPAKETSSN------VEQPVTESTTVNTGNSVVENPENTTPATT- 1207 Query: 190 TWLNDRPEQRVPMSRLRARIAERLLESQQTNAILTTFNEVNMAPV 234 +P S R + S N T + + + V Sbjct: 1208 -----QPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTV 1247
>PF06776#Invasion associated locus B Length = 214 Score = 26.8 bits (59), Expect = 0.031 Identities = 16/90 (17%), Positives = 29/90 (32%), Gaps = 5/90 (5%) Query: 6 RPLRAIAIAGALLACAAPTFAQADSPIGMWQTIDDNTHQPKALVQIAEDGDGALTGKVVK 65 R + A A +F +D Q + H + G A +++ Sbjct: 48 NGARLML---AGAMAIALSFGWSDRADA--QGAVRSVHGDWQIRCDTPPGAKAEQCALIQ 102 Query: 66 GLGANDTPDRRCTACTDERKDQLIKGMTII 95 + A D + T + DQ K M ++ Sbjct: 103 SVVAEDRSNAGLTVIILKTADQKSKLMRVV 132
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 41.5 bits (97), Expect = 3e-07 Identities = 12/57 (21%), Positives = 24/57 (42%) Query: 98 VHPSHHGGGTGKRMIEAVRAWARSIGVEKVHLQVLEGNVRAIGFYEHNGWQLAGVET 154 V + G G ++ WA+ + L+ + N+ A FY + + + V+T Sbjct: 97 VAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFIIGAVDT 153
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 685 bits (1768), Expect = 0.0 Identities = 239/865 (27%), Positives = 361/865 (41%), Gaps = 65/865 (7%) Query: 2 RIRHSFLCVSVLVVGSQSQATEFNSSFLDIDGTSNVDLSQFSQPDFTLPGEYMLDVQVND 61 +R C S FN FL D + DLS+F PG Y +D+ +N+ Sbjct: 27 FVRLFVACAFAAQAPLSSAELYFNPRFLADDPQAVADLSRFENGQELPPGTYRVDIYLNN 86 Query: 62 LFYGLQAIEFIALDASGAGKPCLRPELVAQFGLKPSLAKDLPRFQGGRCVDLG-AIEGAT 120 + + + F D+ PCL +A GL + + CV L I AT Sbjct: 87 GYMATRDVTFNTGDSEQGIVPCLTRAQLASMGLNTASVSGMNLLADDACVPLTSMIHDAT 146 Query: 121 VRYLKSDGRLKITIPQAALEFTDSTYLPPSRWSEGIPGAMLDYRVIANTNRNFGAGGGQT 180 + RL +TIPQA + Y+PP W GI +L+Y N+ +N GG + Sbjct: 147 AQLDVGQQRLNLTIPQAFMSNRARGYIPPELWDPGINAGLLNYNFSGNSVQNRI--GGNS 204 Query: 181 NSIQAYGTIGANWDAWRFRGDYQAQSNVGNTAYADRT-FRFSRLYAFRALPSIQSTVTFG 239 + G N AWR R + N +++ + ++ + R + ++S +T G Sbjct: 205 HYAYLNLQSGLNIGAWRLRDNTTWSYNSSDSSSGSKNKWQHINTWLERDIIPLRSRLTLG 264 Query: 240 DDYLTSDIFDTFALTGASIRSDDRMLPPSLRGYAPLISGVARTNATVTVSQAGRVLYVTR 299 D Y DIFD GA + SDD MLP S RG+AP+I G+AR A VT+ Q G +Y + Sbjct: 265 DGYTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQVTIKQNGYDIYNST 324 Query: 300 VSPGAFALQNIN-TSVQGTLDVAVEEEDGSVQRFQVTTAAVPFLARTGQLRYKAAVGKPR 358 V PG F + +I G L V ++E DGS Q F V ++VP L R G RY G+ R Sbjct: 325 VPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQREGHTRYSITAGEYR 384 Query: 359 LFGGGGITPFFGFGEIAYGLPFDITAYGGFIAASGYTSVALGVGRDFGAFGAVSADVTHA 418 P F + +GLP T YGG A Y + G+G++ GA GA+S D+T A Sbjct: 385 SGNAQQEKPRFFQSTLLHGLPAGWTIYGGTQLADRYRAFNFGIGKNMGALGALSVDMTQA 444 Query: 419 RAKLWWSGATRNGNSYRINYSKHFDGLDADVRFFGYRFSEREYTNFAQFSGDPTSYGL-- 476 + L + +G S R Y+K + +++ GYR+S Y NFA + + Sbjct: 445 NSTL-PDDSQHDGQSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFADTTYSRMNGYNIE 503 Query: 477 -------------------ANSKQRYSATMSKRFGDTST-YFSYDQTTYW-ARSSEQRVG 515 N + + T++++ G TST Y S TYW + +++ Sbjct: 504 TQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRTSTLYLSGSHQTYWGTSNVDEQFQ 563 Query: 516 LTLTRAFSIGTLRNLNVSVSAFRTQSAGASGN--QFSVTATLPIGGRHTVTSNLTTGNGS 573 L AF ++N ++S T++A G ++ +P S + S Sbjct: 564 AGLNTAF-----EDINWTLSYSLTKNAWQKGRDQMLALNVNIPFSHWLRSDSKSQWRHAS 618 Query: 574 TSANAGYI--------------YDDSAGRTYQVNAGATDGRASANASFRQRTSAYQ---- 615 S + + + +Y V G G + S T Y+ Sbjct: 619 ASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGDGNSGSTGYATLNYRGGYG 678 Query: 616 -LNAQASTLANAYAAASLEVDGSFVATQYGVSAHANGNAGDTRLLVSTDGVPDVPLS-GT 673 N S ++ V G +A GV+ DT +LV G D + T Sbjct: 679 NANIGYSH-SDDIKQLYYGVSGGVLAHANGVTLGQPL--NDTVVLVKAPGAKDAKVENQT 735 Query: 674 LTHTDSRGYAVLDGISPYNVYDATVNVEKLPLEVQVTNPIQRMVLTDGAIGFVKFSAARG 733 TD RGYAVL + Y ++ L V + N + +V T GAI +F A G Sbjct: 736 GVRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVPTRGAIVRAEFKARVG 795 Query: 734 SNLYLTLTDAAGKPLPFGASVQDAANGKELGIVGEGGAAFLTQVQPKSTLAVRAGERT-- 791 L +TLT KPLPFGA V + + GIV + G +L+ + + V+ GE Sbjct: 796 IKLLMTLTH-NNKPLPFGAMVTS-ESSQSSGIVADNGQVYLSGMPLAGKVQVKWGEEENA 853 Query: 792 LCTVD-ALPNQLQLEG-TPIPVTCQ 814 C + LP + Q + T + C+ Sbjct: 854 HCVANYQLPPESQQQLLTQLSAECR 878
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.5 bits (63), Expect = 0.032 Identities = 12/23 (52%), Positives = 13/23 (56%) Query: 35 VTALCGPNGCGKSTLLRTLAGLQ 57 L G G GKSTL+ TL GL Sbjct: 598 SVVLEGTGGIGKSTLINTLVGLD 620
>2FE2SRDCTASE#Ferric iron reductase signature. Length = 262 Score = 80.8 bits (199), Expect = 3e-20 Identities = 64/215 (29%), Positives = 91/215 (42%), Gaps = 30/215 (13%) Query: 50 PAHRDAMLGAMVDHYGGDPAQHAR---ALMSQWSKYYFGRAAPAGVVAALTLGRPLDMTP 106 P ++L DH + R L+S W+++Y G P ++A LT + LD++P Sbjct: 63 PNVLSSLLAVYSDHIYRNQPMMIRENKPLISLWAQWYIGLMVPPLMLALLTQEKALDVSP 122 Query: 107 ERTFVAL-DDGMPAALYF--ASDALGAPCDDPAPRYAGLIAH-LGAVIDLLAAMGRVTPR 162 E + G A + D P P R LI+ L V+ L A G + + Sbjct: 123 EHFHAEFHETGRVACFWVDVCEDKNATP-HSPQHRMETLISQALVPVVQALEATGEINGK 181 Query: 163 VLWSNAGNLLDYLLETYRSLPCAADPVGDANW-------LFGSTCVRGESNPLRMPVRDA 215 ++WSN G L+++ L + L +G+A F T GE NPL R Sbjct: 182 LIWSNTGYLINWYLTEMKQL------LGEATVESLRHALFFEKTLTNGEDNPL---WRTV 232 Query: 216 VPRSPLLPTPFRARRVCCLRYEIPGETQLCGSCPL 250 V R LL RR CC RY +P Q CG C L Sbjct: 233 VLRDGLL-----VRRTCCQRYRLPD-VQQCGDCTL 261
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 118 bits (296), Expect = 5e-33 Identities = 68/272 (25%), Positives = 115/272 (42%), Gaps = 15/272 (5%) Query: 64 PQRVVALDFMFAESVIALDLVPVGMADTAFYPGWLGYRSEQLAHVTDIGSRQEPGLEAIA 123 P R+VAL+++ E ++AL +VP G+ADT Y W+ V D+G R EP LE + Sbjct: 35 PNRIVALEWLPVELLLALGIVPYGVADTINYRLWVSEPPLP-DSVIDVGLRTEPNLELLT 93 Query: 124 AVKPDLIIGVGFRHAPIFDALDRIAPTILFQFSPNVSEDGVPVTQLDWMRQIFRTIGAVT 183 +KP ++ + P + L RIAP F FS L R+ + + Sbjct: 94 EMKPSFMVW-SAGYGPSPEMLARIAPGRGFNFSDGKQ-------PLAMARKSLTEMADLL 145 Query: 184 GRDARAQAVEAQLDAGIARNATRLAAAGRHGERVALLQDLGLPDRYWAYTGNSTSAGLAR 243 + A+ AQ + I R + G R LL L P + NS + Sbjct: 146 NLQSAAETHLAQYEDFIRSMKPRFV---KRGARPLLLTTLIDPRHMLVFGPNSLFQEILD 202 Query: 244 ALGLE-PWPKKPTREGTLYVTSADLLRQRDLAVLFVTASGMDVPLSAKLDSPVWRFVPAL 302 G+ W + G+ V+ L +D+ VL + A + +P+W+ +P + Sbjct: 203 EYGIPNAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKD-MDALMATPLWQAMPFV 261 Query: 303 KDHRIALIERNIWGFGGPMSALKLADVMTDTM 334 + R + +W +G +SA+ V+ + + Sbjct: 262 RAGRFQRVP-AVWFYGATLSAMHFVRVLDNAI 292
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 30.6 bits (69), Expect = 0.012 Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 4/125 (3%) Query: 40 GIGDGTASLLTTIPILLMGLGALSARRLQRITGIAGGVWLGVALIGLAC-ASRVGAQHAW 98 + + + T +L +G +L GI + G+ + VG Sbjct: 45 NKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFS 104 Query: 99 VLLASACCAGVGIAMVQALLPGFVKAHFATRV--GGAMGVYSTSIMGGAVLASVVAPFAA 156 +L+ + G G A AL+ V A + + G A G+ + + G + + A Sbjct: 105 LLIMARFIQGAGAAAFPALVMVVV-ARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIA 163 Query: 157 ARWGW 161 W Sbjct: 164 HYIHW 168
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.9 bits (64), Expect = 0.043 Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 9/54 (16%) Query: 43 LLGPSGCGKSTALNCIAGLQPLTRGGIWLDDTRIDVLPPERRGFGMVFQNYALF 96 L G G GKST +N + GL + DT D+ + + Sbjct: 601 LEGTGGIGKSTLINTLVGLD-------FFSDTHFDI--GTGKDSYEQIAGIVAY 645
>TYPE3OMOPROT#Type III secretion system outer membrane O protein family signature. Length = 303 Score = 29.2 bits (65), Expect = 0.037 Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 10/78 (12%) Query: 59 WLSPRVVAVLHRHGIRTLADLTVRIPRRRRWWLVIPGLGERSARWIE-GFFAAH--PALT 115 WL + RHG + T+ P R+ W+ + +R + WI+ G + H PAL Sbjct: 13 WLLAQTATECQRHG----REATLEYPTRQGMWVRLSDAEKRWSAWIKPGDWLEHVSPAL- 67 Query: 116 ERARALVAVATPEPVVPW 133 A A V+ VVPW Sbjct: 68 --AGAAVSAGAEHLVVPW 83
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 37.0 bits (86), Expect = 1e-04 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 10/71 (14%) Query: 5 VFTNVNIFDGSGADPYKGEVLIENDRIKSVSKGG--DVMRPAD------AQIVDGRGKFV 56 V TN I D G K ++ +++ RI ++ K G D+ +++ G GK V Sbjct: 71 VITNALILDHWGI--VKADIGLKDGRIAAIGKAGNPDMQPGVTIIVGPGTEVIAGEGKIV 128 Query: 57 MPGMTEAHTHF 67 G ++H HF Sbjct: 129 TAGGMDSHIHF 139
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 30.6 bits (69), Expect = 0.022 Identities = 20/127 (15%), Positives = 35/127 (27%), Gaps = 3/127 (2%) Query: 530 RPPAAWDRDAIAMTSTHDLPTVAGWWRGVDLGWRRVAAEAAAAKRRDEAQPPRDVAAPAP 589 +D++A+ + H P G R ++ RR+ A E + Sbjct: 333 LDVKRFDQEALELMKAHPWP---GNVRELENLVRRLTALYPQDVITREIIENELRSEIPD 389 Query: 590 DDASAHDSDAIVQSMAFGHDTVQRPDSNHSTPPPPPELLAAHAERATERAALWHALQHAG 649 + + S++ + R PP L E + AL Sbjct: 390 SPIEKAAARSGSLSISQAVEENMRQYFASFGDALPPSGLYDRVLAEMEYPLILAALTATR 449 Query: 650 CAPADAA 656 AA Sbjct: 450 GNQIKAA 456
>cloacin#Cloacin signature. Length = 551 Score = 37.0 bits (85), Expect = 1e-05 Identities = 23/58 (39%), Positives = 28/58 (48%) Query: 91 GGPNGAGQGGSGATGGGVGGGSGGAGGSGGTGAGNGGSAGSTGTGGGGAGGTGGGSSG 148 GGP G G GG + G G + GG G+G GG +G GG G G G G+ G Sbjct: 22 GGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGG 79 Score = 36.6 bits (84), Expect = 2e-05 Identities = 25/82 (30%), Positives = 31/82 (37%) Query: 66 AGTQRHGAKHGMRSHSGSAGHVKPGGGPNGAGQGGSGATGGGVGGGSGGAGGSGGTGAGN 125 +G G G S SG+ G G G GSG + G G G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 126 GGSAGSTGTGGGGAGGTGGGSS 147 G+ G G GGG+G G S+ Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSA 83 Score = 34.7 bits (79), Expect = 1e-04 Identities = 25/68 (36%), Positives = 31/68 (45%) Query: 81 SGSAGHVKPGGGPNGAGQGGSGATGGGVGGGSGGAGGSGGTGAGNGGSAGSTGTGGGGAG 140 SG G G + +G G TG GVGGG+ G GG +GS GGG+G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 141 GTGGGSSG 148 GG +G Sbjct: 62 HGNGGGNG 69 Score = 33.5 bits (76), Expect = 2e-04 Identities = 26/82 (31%), Positives = 32/82 (39%) Query: 67 GTQRHGAKHGMRSHSGSAGHVKPGGGPNGAGQGGSGATGGGVGGGSGGAGGSGGTGAGNG 126 G G G SG + P GG +G+G G +G G GGG+G +GG GTG Sbjct: 23 GPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLS 82 Query: 127 GSAGSTGTGGGGAGGTGGGSSG 148 A G G G Sbjct: 83 AVAAPVAFGFPALSTPGAGGLA 104
>PERTACTIN#Pertactin signature. Length = 922 Score = 32.4 bits (73), Expect = 1e-04 Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 7/69 (10%) Query: 4 PMKHDSAQWLQRPEPPLPDIEPDPEPPDPDDVPPDLPEPYREPEGDPPGHAPPERDPPSR 63 S + P P P +P P+P PP P+P + P+ PP+R P + Sbjct: 556 GNGQWSLVGAKAPPAPKPAPQPGPQPGPQPPQPPQPPQPPQPPQ-------PPQRQPEAP 608 Query: 64 EPPVRAWRA 72 P A R Sbjct: 609 APQPPAGRE 617
>PF05272#Virulence-associated E family protein Length = 892 Score = 27.7 bits (61), Expect = 0.024 Identities = 5/32 (15%), Positives = 12/32 (37%) Query: 110 DKDHWPAMADPQWAEPLHEFYGSTPYWSAGDE 141 + +AE LH + Y+ + ++ Sbjct: 718 NLVWLQKFRGQLFAEALHLYLAGERYFPSPED 749
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 35.6 bits (82), Expect = 3e-04 Identities = 27/156 (17%), Positives = 57/156 (36%), Gaps = 5/156 (3%) Query: 43 LTPIAGDLHVSEGQAGQAISVSGAFALVTSLLIASLAGRCDRKRLLLSLTLLTIVSGTVV 102 L IA D + + + + + L+ + KRLLL ++ G+V+ Sbjct: 37 LPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLL-FGIIINCFGSVI 95 Query: 103 AFAPNYGAF--IAGRALIGVAIGGFWSMSAATAMRLVPDRQVPRALAIVNGGNALATVVA 160 F + I R + G F ++ R +P +A ++ A+ V Sbjct: 96 GFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVG 155 Query: 161 APLGSFLGAIVGWRWAFFCVVPVAALALGWKLVSLP 196 +G + + W++ ++P+ + L+ L Sbjct: 156 PAIGGMIAHYIH--WSYLLLIPMITIITVPFLMKLL 189
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 57.9 bits (140), Expect = 1e-12 Identities = 25/119 (21%), Positives = 44/119 (36%), Gaps = 4/119 (3%) Query: 29 RVLVVDDYRDAADALRLLLEARGFECQVADDPFAVCDVARDWQPFAVVLDIAMPGLDGLQ 88 +LV DD L L G++ ++ + + VV D+ MP + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 89 LAARLR-RDPQTSDMLLIACSGLASRRDCERAKEAGFDAHCAKPLTPHRLLGYLESASG 146 L R++ P D+ ++ S + +A E G + KP L+G + A Sbjct: 65 LLPRIKKARP---DLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 131 bits (331), Expect = 4e-39 Identities = 83/261 (31%), Positives = 126/261 (48%), Gaps = 21/261 (8%) Query: 39 LAGKVALVTGGDSGIGRAVAVGFAKEGADVAIVYLKESDDAAHTKQLIEQA----GRRCE 94 + GK+A +TG GIG AVA A +GA +A V D + + + R E Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAV-----DYNPEKLEKVVSSLKAEARHAE 60 Query: 95 AIACDVGDRRQARDAVARTVERLGRLDVLVNNAGEQHPQPGIEDVSEEQLERTFRTNVYG 154 A DV D + AR +G +D+LVN AG P I +S+E+ E TF N G Sbjct: 61 AFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGL-IHSLSDEEWEATFSVNSTG 119 Query: 155 MFFCTQAALPHLK--EGGRIVNTASVTAYHGSPKLPDYSATKGAIVAFTRSLSIELAERD 212 +F +++ ++ G IV S A + Y+++K A V FT+ L +ELAE + Sbjct: 120 VFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYN 179 Query: 213 IRVNAVAPGPIWTPLIPSTFT----PEQV-----AKFGSNVPLKRPGQPDELIDCYVLLA 263 IR N V+PG T + S + EQV F + +PLK+ +P ++ D + L Sbjct: 180 IRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLV 239 Query: 264 SDGASYMTGQTLHPNGGSIVG 284 S A ++T L +GG+ +G Sbjct: 240 SGQAGHITMHNLCVDGGATLG 260
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 76.2 bits (187), Expect = 5e-18 Identities = 50/194 (25%), Positives = 79/194 (40%), Gaps = 5/194 (2%) Query: 6 KPVGEQTIVITGATSGIGLVTARKAARRGAKLVLFARNEEALNTLCEEIRRHGGLAVPVA 65 K + + ITGA GIG AR A +GA + N E L + ++ A Sbjct: 4 KGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFP 63 Query: 66 GDVGNVEDLQRAAAAAADTYGGFDTWINNAGVSIFGTAAQVPLEDQRRLFDTNYWGVVHG 125 DV + + A G D +N AGV G + E+ F N GV + Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 126 SLVAADHFRRKSDFHGGAIINMGSEASDAPVPLQSAYVASKHAVKGFTDSLRLEMEADHL 185 S + + + G+I+ +GS + P +AY +SK A FT L LE+ + Sbjct: 124 SRSVSKYMMDR---RSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYN- 179 Query: 186 PVSVTLIKPAAIDT 199 + ++ P + +T Sbjct: 180 -IRCNIVSPGSTET 192
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 167 bits (425), Expect = 3e-51 Identities = 82/335 (24%), Positives = 136/335 (40%), Gaps = 39/335 (11%) Query: 8 RVLVTGGAGFLGSHLCERLVTAGHDVLCVDNF---Y-TGTKDNIAHLLDAPNFELMRHDV 63 + LVTG AGF+G H+ +RL+ AGH V+ +DN Y K LL P F+ + D+ Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 64 TFPLYV-------EVDEIYNLACPASPVHYQ-RDPVQTTKTSVHGAINLLGLAKRVK-AR 114 + + ++ + V Y +P +++ G +N+L + K Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLA-VRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 115 ILQASTSEVYGDPDVHPQDEHYCGRVN-PTGIRACYDEGKRCAETLFADYHRQYGIDVRI 173 +L AS+S VYG P V+ P + Y K+ E + Y YG+ Sbjct: 121 LLYASSSSVYGLNRKMPFSTD--DSVDHPVSL---YAATKKANELMAHTYSHLYGLPATG 175 Query: 174 ARIFNTYGPRMHPADGRVVSNFVTQALAEQPLTVYGDGKQTRSFCYVDDMVDALIRLMDE 233 R F YGP P + F L + + VY GK R F Y+DD+ +A+IRL D Sbjct: 176 LRFFTVYGPWGRP--DMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDV 233 Query: 234 PGDASEPV-----------------NLGSDVEIAMIDVAREVVRIVGANVPIEFRPLPSD 276 A N+G+ + ++D + + +G PL Sbjct: 234 IPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLPLQPG 293 Query: 277 DPRQRRPNLAAAQKRLGWRATTTFANGLAHTARYF 311 D + + A + +G+ TT +G+ + ++ Sbjct: 294 DVLETSADTKALYEVIGFTPETTVKDGVKNFVNWY 328
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 78.7 bits (194), Expect = 2e-17 Identities = 38/124 (30%), Positives = 55/124 (44%), Gaps = 7/124 (5%) Query: 639 LDTQRILIVDDDATTRASLTAALTTFGAAVAIASSGREALAMVADMRPTVVLSDLAMPDG 698 + IL+ DDDA R L AL+ G V I S+ +A +V++D+ MPD Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 699 DGFWLLEALRRGTTNGDSGPLDVRVLAVTAHAGLADERRALEAGFDGYLCKPVDVRELAH 758 + F LL ++ D+ VL ++A +A E G YL KP D+ EL Sbjct: 61 NAFDLLPRIK-------KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIG 113 Query: 759 KIAH 762 I Sbjct: 114 IIGR 117
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 452 bits (1165), Expect = e-159 Identities = 163/473 (34%), Positives = 251/473 (53%), Gaps = 35/473 (7%) Query: 4 VLIVEDDADTRTMLATLARTQQLTCDTAATLEEARTLVSTHTPDLVLCDLVLPDGNGMDL 63 +L+ +DDA RT+L + ++ DLV+ D+V+PD N DL Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 64 FDALPKR-AHCEIVLTTGHASLETAIDALRRGATDYLVKPLNMQRLNSIFARVPRTTALH 122 + K +++ + + TAI A +GA DYL KP ++ L I R AL Sbjct: 66 LPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR-----ALA 120 Query: 123 EEIAELRSELQRLGRFGRMLGSSPAMQAVYDAIGRVARTEASVLLTGESGTGKELAAQTV 182 E ++G S AMQ +Y + R+ +T+ ++++TGESGTGKEL A+ + Sbjct: 121 EPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARAL 180 Query: 183 HDLSLRRRGPFLAVNCGAIAANLVESEMFGHDRGSFTGAERQHKGFFERADGGTLFLDEI 242 HD RR GPF+A+N AI +L+ESE+FGH++G+FTGA+ + G FE+A+GGTLFLDEI Sbjct: 181 HDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEI 240 Query: 243 TEMPLESQVKLLRVLETGRVTRLGSTREIDVDVRIVAATNRDPEAAMADGKLRPDLFHRI 302 +MP+++Q +LLRVL+ G T +G I DVRIVAATN+D + ++ G R DL++R+ Sbjct: 241 GDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRL 300 Query: 303 NVFPIPLPSLRERGDDIPMLADAFLQRYNEESGRNLRFAPAVREALKTYEWPGNVRELRN 362 NV P+ LP LR+R +DIP L F+Q+ +E RF E +K + WPGNVREL N Sbjct: 301 NVVPLRLPPLRDRAEDIPDLVRHFVQQAEKEGLDVKRFDQEALELMKAHPWPGNVRELEN 360 Query: 363 FVQRASIFTDADVI---------------------------ETLPPPIMDELSSMVDSHE 395 V+R + DVI ++ + + + S Sbjct: 361 LVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFG 420 Query: 396 DRVTVP--FGTPLEEVDRKLILGTIAQCGGVKAQAAEVLDVSLKTIYNRLAQL 446 D + + L E++ LIL + G + +AA++L ++ T+ ++ +L Sbjct: 421 DALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIREL 473
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 327 bits (841), Expect = e-111 Identities = 121/342 (35%), Positives = 186/342 (54%), Gaps = 33/342 (9%) Query: 40 MSKSDDDGTRLFGRSRTIQDLLLKVSRVAATRVSVLVVGESGAGKDIVARLIHDMSPRRR 99 + DG L GRS +Q++ ++R+ T +++++ GESG GK++VAR +HD RR Sbjct: 129 LEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHDYGKRRN 188 Query: 100 GPFVPVNCGAIPKDIAESQLFGHEKGSFTGAVAQHVGMFEAARGGTLFLDEIAEMPLELQ 159 GPFV +N AIP+D+ ES+LFGHEKG+FTGA + G FE A GGTLFLDEI +MP++ Q Sbjct: 189 GPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQ 248 Query: 160 VKLLRTLETNTIVRVGGHEAIPLDVRIVAATHHDPVEALRSGALREDLFYRIAPIALHVP 219 +LLR L+ VGG I DVRIVAAT+ D +++ G REDL+YR+ + L +P Sbjct: 249 TRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLNVVPLRLP 308 Query: 220 ALRQREDDVGDIALQIVERLNARHRTRKRLSTQAMKALRAYTWPGNVRELRNTLERAFIL 279 LR R +D+ D+ V++ KR +A++ ++A+ WPGNVREL N + R L Sbjct: 309 PLRDRAEDIPDLVRHFVQQAEKEGLDVKRFDQEALELMKAHPWPGNVRELENLVRRLTAL 368 Query: 280 ADEQ----------IELQLPRRPPPREEVRHNAMTLH----------------------- 306 + + ++P P + R ++++ Sbjct: 369 YPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFGDALPPSGL 428 Query: 307 IGTTLAHTQQRFIVASLRHFNGDKPRTAKALGISLKTLYNRL 348 LA + I+A+L G++ + A LG++ TL ++ Sbjct: 429 YDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKI 470
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 108 bits (271), Expect = 1e-30 Identities = 48/187 (25%), Positives = 85/187 (45%) Query: 14 LAGRTALVTGGGRGLGEAICEELAQHGAHVVVADLDGDRAAAVAQRLERHGGQAVGRPLD 73 + G+ A +TG +G+GEA+ LA GAH+ D + ++ V L+ A P D Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 74 VRDEASVLQVVHDARESLGELDVIVNNAAIDVTAPIDDVSVDAWQQVLMTNLFGPYLMCH 133 VRD A++ ++ +G +D++VN A + I +S + W+ N G + Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 134 AAVPMMKARGNGHIVNIASTASKRAWPNASAYHATKWGLLGLSHALHAELRPSGVRVSAI 193 + M R +G IV + S + + +AY ++K + + L EL +R + + Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 194 VAGGMRT 200 G T Sbjct: 186 SPGSTET 192
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 57.9 bits (140), Expect = 1e-10 Identities = 37/152 (24%), Positives = 57/152 (37%), Gaps = 15/152 (9%) Query: 764 LDGLRIACVDDHDEAREALGALLKVAGADVHAYASGQALLDDLWRARRADWPALLVCDID 823 + G I DD R L L AG DV ++ LWR A L+V D+ Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAA----TLWRWIAAGDGDLVVTDVV 56 Query: 824 LGDDEDDGYAVMSRVRQLDAARDRDGRAPLEALALSGHARDRDRTRAVEAGFHAYLTKPA 883 + D ++ + ++ R+ + P+ L +S +A E G + YL KP Sbjct: 57 MPD--ENAFDLLPRI------KKARPDLPV--LVMSAQNTFMTAIKASEKGAYDYLPKPF 106 Query: 884 VAADLIAAL-RALAFSSGEIHAEPSEPDDTRS 914 +LI + RALA + D Sbjct: 107 DLTELIGIIGRALAEPKRRPSKLEDDSQDGMP 138
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 27.4 bits (60), Expect = 0.031 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%) Query: 12 GMPIARPDSPPVVRRPSGRP-PGGKPGKEADMNSTLNPD 49 G P RPDSP V RP+GR K G++ + PD Sbjct: 369 GQPGTRPDSPAVPDRPNGRHRKERKEGEDGGLLCKFFPD 407
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 72.6 bits (178), Expect = 1e-15 Identities = 28/124 (22%), Positives = 48/124 (38%), Gaps = 2/124 (1%) Query: 403 RIVVVDDNRDSADTLAVLLQLKGHAPRVAYNANEALALARDYAPQLMLLDLTMPDVDGFT 462 I+V DD+ L L G+ R+ NA L++ D+ MPD + F Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 463 LLQELRAIDALRDTTCVALSGHARASDLERTERAGFDDHLVKPVEMAVLDALLQRVARQV 522 LL ++ D + +S + G D+L KP ++ L ++ R + Sbjct: 65 LLPRIKKARP--DLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122 Query: 523 QGTP 526 + P Sbjct: 123 KRRP 126
>PF04619#Dr-family adhesin Length = 160 Score = 25.7 bits (56), Expect = 0.014 Identities = 7/24 (29%), Positives = 12/24 (50%) Query: 18 RNANGAWVAQVRIFRDGAPVDLPA 41 +N G+W + I+ DG + P Sbjct: 123 KNDVGSWGGIIGIYVDGQQTNTPP 146
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 37.1 bits (86), Expect = 3e-04 Identities = 37/178 (20%), Positives = 61/178 (34%), Gaps = 18/178 (10%) Query: 573 TQEERQKLLKMEEQLRERVVG---QSDAVVAVSDAVRLSRAGLGQTHRPIATFLFLGPTG 629 + L ++ ++ +V S A++ L + + T + G +G Sbjct: 111 LIGIIGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESG 170 Query: 630 VGKTELAKALAETVFGDEQAIIRIDMSEYMERHAVARLIGAPPGYVGYDEGGQLTERVRR 689 GK +A+AL + + I+M+ + L G E G T R Sbjct: 171 TGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGH--------EKGAFTGAQTR 222 Query: 690 RPYSV-------ILLDEIEKAHPDVYNVLLQVFDDGRLTDGKGRVVDFSNTIIIATSN 740 + LDEI D LL+V G T GR S+ I+A +N Sbjct: 223 STGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATN 280
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 43.3 bits (102), Expect = 2e-06 Identities = 58/330 (17%), Positives = 122/330 (36%), Gaps = 19/330 (5%) Query: 38 AIIATLTSRITSLGLADVRGALGIGFDEGAWINTAFTASQMFVGPLAIAAAFMFGTRRVL 97 + + L + ++ L D+ W+NTAF + + + G +R+L Sbjct: 23 SFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLL 82 Query: 98 VAGAVVF-LGAETVLPLCTQFGAFIVCQAIAGLASGVFVPLTVGFVVRTLPPRLIPFGIA 156 + G ++ G+ + F I+ + I G + F L + V R +P Sbjct: 83 LFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFG 142 Query: 157 AYAMNLEMSLNLSATLEGWYSEHLSWRWLFWQNAAL--TVPFIACLMLSLADEPIKRFAS 214 + M + + G + ++ W +L TVPF+ L+ + R Sbjct: 143 LIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLL-----KKEVRIKG 197 Query: 215 GIDARGMLLGAGGFACLCIALDQGERLFWLQSPLIVALLAAGILMIAAFLIHELASPRAG 274 D +G++L + G + F LIV++L+ I F+ H Sbjct: 198 HFDIKGIILMSVGIVFFMLFTTSYSISF-----LIVSVLSFLI-----FVKHIRKVTDPF 247 Query: 275 LDLGYLARPNIALLIVLVGLVRFTVLNTSFIPSLFLASTYGLRPLQIGDTLRWIA-IPQL 333 +D G + ++ G++ TV + + + L +IG + + + + Sbjct: 248 VDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVI 307 Query: 334 LFAPCVALLLQRVDPRRLIVAGFAMVAIAF 363 +F +L+ R P ++ G ++++F Sbjct: 308 IFGYIGGILVDRRGPLYVLNIGVTFLSVSF 337
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 74.9 bits (184), Expect = 5e-17 Identities = 34/188 (18%), Positives = 67/188 (35%), Gaps = 5/188 (2%) Query: 16 SRRLAVVAIAVIALLLVALLVYEFYARDRG---TDDAYVTGHLHVISPRVAGTVEHVLVD 72 SRR +VA ++ L++A ++ + +G I P V+ ++V Sbjct: 54 SRRPRLVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVK 113 Query: 73 DNQFVHAGDALVQIDRRDFDVRVAAQRARVAQAHADASRARALIEQADAALVSAHADAEK 132 + + V GD L+++ + ++ + QA + +R + L + L Sbjct: 114 EGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIE--LNKLPELKLP 171 Query: 133 AELDYARARELTRETPRGLSKQEFDAADAARKSARARVAAADAQRRSALAAAQAAEAASS 192 E + E L K++F + + A+R + LA E S Sbjct: 172 DEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSR 231 Query: 193 QNDAELRD 200 + L D Sbjct: 232 VEKSRLDD 239 Score = 74.5 bits (183), Expect = 7e-17 Identities = 41/300 (13%), Positives = 88/300 (29%), Gaps = 39/300 (13%) Query: 70 LVDDNQFVHAGDALVQIDRRDFDVRVAAQRARVAQAHADASRARALIEQADAALVSAHAD 129 L D+ F + + V + + + + Q + + RA A + Sbjct: 170 LPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENL 229 Query: 130 AEKAELDYARARELTRETPRGLSKQEFDAADAARKSARARVAAADAQR---RSALAAAQA 186 + + L + + ++K + A + +Q S + +A+ Sbjct: 230 SRVEKSRLDDFSSLLHK--QAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKE 287 Query: 187 -------------------AEAASSQNDAELRDALLQLGYTAVVAPSDGYVGKKTVET-G 226 EL + + + AP V + V T G Sbjct: 288 EYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEG 347 Query: 227 EHVAPGQALLTLV-EPHPWIV-ANFRETQLRHVRAGDAVQLRFDALPERAF---SGRIDS 281 V + L+ +V E V A + + + G ++ +A P + G++ + Sbjct: 348 GVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKN 407 Query: 282 LSPATGAQFALLPPDNATGNFTKVTQRVPVKILLDGPAATEPRIRPGLSVVVTLQPGSES 341 ++ D G V + L G + G++V ++ G S Sbjct: 408 INLDA-------IEDQRLGLVFNVIISIEENCLSTG--NKNIPLSSGMAVTAEIKTGMRS 458
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 37.6 bits (87), Expect = 8e-05 Identities = 56/371 (15%), Positives = 127/371 (34%), Gaps = 52/371 (14%) Query: 46 IAPGLHMSGNTASLIVSLTQIGYALGLFFIVPLGDLLENRKLMIVTAVVS-IASLAAAAL 104 IA + + + + + + +++G L D L ++L++ +++ S+ Sbjct: 40 IANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVG 99 Query: 105 VRTPGLFLAISLLIGFSSVAVQILVPLA-AHLAPDHSRGRVVGTIMSGLLLGILLARPLS 163 L + + G + A LV + A P +RG+ G I S + +G + + Sbjct: 100 HSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIG 159 Query: 164 SVVADAFGWRFVFAAAAVLMTLVTAVLALTIPSRQPDHRATYFELIGSLL---------- 213 ++A W ++ + M + V L ++ +F++ G +L Sbjct: 160 GMIAHYIHWSYLLL---IPMITIITVPFLMKLLKKEVRIKGHFDIKGIILMSVGIVFFML 216 Query: 214 ----------------------HLVRT------MPVLRHRAFYQG-----LMFASFSLFW 240 H+ + + ++ F G ++F + + F Sbjct: 217 FTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFV 276 Query: 241 TAVPVELTRHYGLSQSAIG-LFALVGAI-GATSAPVAGRLADAGHTVRATLIALVAGALA 298 + VP + + LS + IG + G + + G L D + I + +++ Sbjct: 277 SMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVS 336 Query: 299 Y--AVGFVHGTGLYGLVVTGIVLDFAVQMNMVLGQREIYALHAASRNRLNALYMTSIFVG 356 + A + T + ++ VL V+ +L +L + F+ Sbjct: 337 FLTASFLLETTSWFMTIIIVFVLGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLS 396 Query: 357 GAVGSALASPL 367 G A+ L Sbjct: 397 EGTGIAIVGGL 407
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 31.9 bits (72), Expect = 0.007 Identities = 29/165 (17%), Positives = 53/165 (32%), Gaps = 17/165 (10%) Query: 139 QVRRTPAPHWARVAGGWTALQFAEKRGPTTAELNAIAPDTPVFVQHLADSAWLNAAALRA 198 Q+ T H+A V T +Q G A + DT + +H+ D+ + AL+A Sbjct: 78 QITDTTNGHYAPV----TYIQVEAPTGTFIASGVVVGKDTLLTNKHVVDATHGDPHALKA 133 Query: 199 LGYGRDTPDPPGGELRRDR-HGRPTGLLLARQDPAVLDAVLARAPTLDAADRVNSTRQFM 257 + + P G ++ D A++ + V Sbjct: 134 FPSAINQDNYPNGGFTAEQITKYSG-----EGDLAIVK-FSPNEQNKHIGEVVKPATMSN 187 Query: 258 HALNRVGVTSAIDAGGDGLAYPDDYAAVATLARRGELTTRIAYAL 302 +A +V + YP D +G++T A+ Sbjct: 188 NAETQVNQNITV------TGYPGDKPVATMWESKGKITYLKGEAM 226
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 80.6 bits (199), Expect = 8e-20 Identities = 34/153 (22%), Positives = 64/153 (41%), Gaps = 10/153 (6%) Query: 2 RILIVEDEPKTGAYLKKGLEESGFSVDLAKDGGEGLTLAQEERYDVIVLDVMLPVLDGWA 61 IL+ +D+ L + L +G+ V + + D++V DV++P + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 VLKRLRDTH-TTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARIRTL--ARRG 118 +L R++ PVL ++A++ + E GA DYL KPF EL+ I + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 119 PPRETEHLAVGDLEI-------DVVRRRVKRGA 144 P + E + + + + R + R Sbjct: 125 RPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLM 157
>PF03944#delta endotoxin Length = 633 Score = 34.3 bits (78), Expect = 0.001 Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 9/88 (10%) Query: 50 TAQGPLLKRIPWHPAQGHARPAMPTMVQASVLGGGSSVNAMIYIRGVPSDYDQWRDSGAT 109 T Q L R+P QG+ +P QA+ L + +IR V + D+W S AT Sbjct: 152 TMQQLFLNRLPQFQMQGYQLLLLPLFAQAANLH-------LSFIRDVILNADEWGISAAT 204 Query: 110 GWGFDDVLPYFKRSEDNERFCNDVHGTG 137 + D L + R N +C + + + Sbjct: 205 LRTYRDYLKNYTRDYSN--YCINTYQSA 230
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 28.6 bits (64), Expect = 0.049 Identities = 60/273 (21%), Positives = 97/273 (35%), Gaps = 13/273 (4%) Query: 42 ATLGALLLCVGAGSVIGMMLTGTLGTRFGSKPIVFGGGVGLAVILPLLAIAHDAATLGIA 101 A G LL + G L RFG +P++ G AV ++A A L I Sbjct: 43 AHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIG 102 Query: 102 LFGFGAALGSLDVAMNINAVEVERMEGRPLMSGF-HAQYSMGGFGGSALATFLL---AAR 157 G + VA A ++ + R GF A + G G L + Sbjct: 103 RIVAGITGATGAVAGAYIA-DITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHA 161 Query: 158 TGVFASMLLCSALMFAGILIARRHLIETP--RRRGGPLLAVPRGIVLL--LAGLVAISFL 213 A+ L + L+ H E RR LA R + +A L+A+ F+ Sbjct: 162 PFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFI 221 Query: 214 LDGVLLSWGALF-ISGKGLVPATQGGLGYMLFSIAMM---AGRLSGDTLTTRIGDRSMMF 269 + V AL+ I G+ +G L + ++ A + + R+G+R + Sbjct: 222 MQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALM 281 Query: 270 WGGAVATAGMVVLLVAPIAPVALAGFLLIGLGA 302 G G ++L A +A +L+ G Sbjct: 282 LGMIADGTGYILLAFATRGWMAFPIMVLLASGG 314
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 91.4 bits (227), Expect = 8e-23 Identities = 85/381 (22%), Positives = 138/381 (36%), Gaps = 55/381 (14%) Query: 1 MKRKVISAISLSITAYAAGAHAQSSVTLYGIVDTGIAYIHNSGGQASQWKM----SAGNL 56 MK+ + +++T A A + VTLYG + G+ + +Q + Sbjct: 1 MKKSL-----IALTLAALPVAAMADVTLYGTIKAGVETSRSVAHNGAQAASVETGTGIVD 55 Query: 57 SGNEWGLKGTEDLGGGLSASFQLENGFDLGSGQLQNDGRMFGRQAFVGLGSTRFGTVTLG 116 G++ G KG EDLG GL A +Q+E + D RQ+F+GL FG + +G Sbjct: 56 LGSKIGFKGQEDLGNGLKAIWQVEQK----ASIAGTDSGWGNRQSFIGLKG-GFGKLRVG 110 Query: 117 RQYDPVTDLVQPITADSYSGLFAPPGDIDNYDDSARFNSAVKWTSPSWGGVTVETMYAFG 176 R + D DS S ++ + +V++ SP + G++ YA Sbjct: 111 RLNSVLKDTGDINPWDSKSDYLG----VNKIAEPEARLISVRYDSPEFAGLSGSVQYALN 166 Query: 177 GVAGSTGSGQSWSAAAAYSGGALSVAGGFLHVDNGNARTSARGTSSADSFFNSAVNAAYA 236 AG + +S+ A Y G V G + + + + + Sbjct: 167 DNAGR-HNSESYHAGFNYKNGGFFVQYGGAYKRHHQVQENVNIEKYQ----------IHR 215 Query: 237 TARGIDIGRIGAQYVVGPVTAGAAYSYTRYTSDGASTFAGSQH-FQNGSVFASWMATPTL 295 G D + Y V A S + T + ++ G+V TP + Sbjct: 216 LVSGYDNDAL---YASVAVQQQDAKLVEENYSHNSQTEVAATLAYRFGNV------TPRV 266 Query: 296 QVIGGYNYTRSGGHSSATYQQVNLGVDYLLSKRTDVYAMAGYQHASGDNGQGSAQAVIGS 355 G+ + + + Y QV +G +Y SKRT AG+ G+G Sbjct: 267 SYAHGFKGSFDATNYNNDYDQVVVGAEYDFSKRTSALVSAGWL----QEGKG-------- 314 Query: 356 YDVNSGANSQIVAIVGLRHKF 376 VGLRHKF Sbjct: 315 ----ESKFVSTAGGVGLRHKF 331
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 30.6 bits (69), Expect = 0.010 Identities = 39/172 (22%), Positives = 70/172 (40%), Gaps = 3/172 (1%) Query: 196 TAQTHRFARPTLYIVWIGILCFVAFLAEGAVLDWSGVFLVTEKAFPQSSAGYGYAAFALA 255 T+ + R ++W+ IL F + L E VL+ S + + P +S + AF L Sbjct: 3 TSYSQSNLRHNQILIWLCILSFFSVLNE-MVLNVSLPDIANDFNKPPASTNWVNTAFMLT 61 Query: 256 MTIARLTGDRLA-RVSGARSILVAGSVGTAAALVALVFARHWMILIALFAAVGFGLANIV 314 +I +L+ ++ R +L + +++ V + +LI G G A Sbjct: 62 FSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFP 121 Query: 315 PLFFLHVSRQ-RRMRVELAMPVVATLGYAGMLAGPAVLGAIGELAGLSASLL 365 L + V+R + A ++ ++ G GPA+ G I S LL Sbjct: 122 ALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLL 173
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 102 bits (256), Expect = 1e-28 Identities = 69/255 (27%), Positives = 111/255 (43%), Gaps = 28/255 (10%) Query: 8 GLDSRHAVVTGASSGIGRAIVERLLANGWRVTGL--CRSHVETAHDSLKI-------VPV 58 G++ + A +TGA+ GIG A+ L + G + + +E SLK P Sbjct: 5 GIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPA 64 Query: 59 DVTDFAALAPVCDAL----GVVDALVHAAGFMRTAPLGQLSHDDGAAMWRLHVESATFLA 114 DV D AA+ + + G +D LV+ AG +R + LS ++ A + ++ + Sbjct: 65 DVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 115 DRLVPRMPP--GGRIVLLGSRTANGAATR-SQYAATKCALVGLARSWAAELAPHGITVNV 171 + M G IV +GS A T + YA++K A V + ELA + I N+ Sbjct: 125 RSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNI 184 Query: 172 VAPGATDTPFLRD------------PARAATPPRLPPIGRFITPDEVAALTAFLLSANAG 219 V+PG+T+T T P+ + P ++A FL+S AG Sbjct: 185 VSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAG 244 Query: 220 AITGQQIVMCGGASL 234 IT + + GGA+L Sbjct: 245 HITMHNLCVDGGATL 259
>PF06580#Sensor histidine kinase Length = 349 Score = 39.5 bits (92), Expect = 2e-05 Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 23/97 (23%) Query: 399 LLDNALRH----TPSHGEVEIALEPRGERVIVTVSDTGEGIPAARREGLFQRPQRPMGGG 454 L++N ++H P G++ + V + V +TG Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSL----------------ALKN 306 Query: 455 TVTSGGLGLLIVHRMLAL---NGSGIRLVDRPGRGAV 488 T S G GL V L + + I+L ++ G+ Sbjct: 307 TKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNA 343
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 84.5 bits (209), Expect = 5e-21 Identities = 37/142 (26%), Positives = 70/142 (49%), Gaps = 2/142 (1%) Query: 1 MDQPKRILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLMLPG 60 M IL+ +DDA I VL+ L Y+V +++ A R + G+ D ++ D+++P Sbjct: 1 MTGAT-ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPD 59 Query: 61 VDGLEICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARV-KAL 119 + ++ R + P+++ SA+++ + I E GA DYL KPF + EL+ + +AL Sbjct: 60 ENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119 Query: 120 LRRVDALARDSRIDAGTLDVAG 141 ++ + + G Sbjct: 120 AEPKRRPSKLEDDSQDGMPLVG 141
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 58.3 bits (141), Expect = 1e-11 Identities = 70/333 (21%), Positives = 119/333 (35%), Gaps = 38/333 (11%) Query: 43 SQVQLYGLL--GTYVGSIKRSDTPQAAVQMGSGGLTT--SFWGIRGKEDLGGGVGAIFVL 98 + V LYG + G + QAA G+ S G +G+EDLG G+ AI+ + Sbjct: 19 ADVTLYGTIKAGVETSRSVAHNGAQAASVETGTGIVDLGSKIGFKGQEDLGNGLKAIWQV 78 Query: 99 ESFFQPANGALGRSAADPFWSRNAYVGFQGDFGQVTFGRQRNPAYTAESLVNPFGSSTVF 158 E Q A+ A S + +R +++G +G FG++ GR + + S Sbjct: 79 E---QKASIAGTDSG---WGNRQSFIGLKGGFGKLRVGRLNSVLKDTGDINPWDSKSDYL 132 Query: 159 SPLVLQTFVTNYGGTIIGDTVWNNTVKYTTPDFKGFAATVIYGLGGVAGSPGVGNLGVHL 218 I +V+Y +P+F G + +V Y L AG + Sbjct: 133 G-----------VNKIAEPEARLISVRYDSPEFAGLSGSVQYALNDNAGRHNSESYHAGF 181 Query: 219 NYRGHGLTAVLSGQRVRY---TAAGPVGAQYAYLAGAAYDFKLVTLYGAWAMTSDASTPT 275 NY+ G G R+ + + + YD LY + A+ + Sbjct: 182 NYKNGGFFVQYGGAYKRHHQVQENVNIEKYQIHRLVSGYDND--ALYASVAVQQQDAKLV 239 Query: 276 G---SHTYEAGLSIPLSPADFLLAE----WARTKRSGATRAA-SGLRNTASVGYNHLLSK 327 SH + ++ L+ F +A + + + VG + SK Sbjct: 240 EENYSHNSQTEVAATLA-YRFGNVTPRVSYAHGFKGSFDATNYNNDYDQVVVGAEYDFSK 298 Query: 328 RTDLYAIYAY---DKLSAHPIGNSFAVGIRHTF 357 RT + K + + + VG+RH F Sbjct: 299 RTSALVSAGWLQEGKGESKFVSTAGGVGLRHKF 331
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 57.1 bits (138), Expect = 6e-11 Identities = 41/140 (29%), Positives = 62/140 (44%), Gaps = 7/140 (5%) Query: 59 AFDALSLAFVLPVLVGL---WHLS---AGQIGVLIAAGYLGQVVGALVFGWLAERLGRVP 112 A DA+ + ++PVL GL S G+L+A L Q A V G L++R GR P Sbjct: 15 ALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRP 74 Query: 113 SATVAVGVMSAMSVVCAFTGSFHMLFLMRFLQGIGVGGEVPVAATYINELSQAHGRGRFF 172 V++ + + A +L++ R + GI G VA YI +++ R R F Sbjct: 75 VLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGI-TGATGAVAGAYIADITDGDERARHF 133 Query: 173 ILYELIFPLGLLAAAQLGAF 192 F G++A LG Sbjct: 134 GFMSACFGFGMVAGPVLGGL 153
>cloacin#Cloacin signature. Length = 551 Score = 33.1 bits (75), Expect = 9e-05 Identities = 18/43 (41%), Positives = 21/43 (48%) Query: 46 GGDDNSSPAASGGSGTSNNGGSGGSGGTPTTGTSGGNPGSPTA 88 GG S GGSG N GG+G SGG TG + +P A Sbjct: 47 GGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVA 89
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 62.3 bits (151), Expect = 3e-14 Identities = 31/192 (16%), Positives = 56/192 (29%), Gaps = 13/192 (6%) Query: 2 RANKRQLVVDKATELFSRHGFHPVGVDWIIDDSGVARMTLYRHFASKDELIREVLVQRYD 61 RQ ++D A LFS+ G + I +GV R +Y HF K +L E+ Sbjct: 9 AQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSES 68 Query: 62 LIVGSIDAQLQHVVD-----PVERVKTIFDWYEAWFRTPEFAGCLFERALAEFGTAYAPI 116 I E + + + R +F + A + Sbjct: 69 NIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFV--GEMAVV 126 Query: 117 SDVAIRYRRKMVEWIAELIEA------LVPPETANRLATVFMMLLDGATVDARAFNDSAA 170 + + I + ++ L R A + + G + S Sbjct: 127 QQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQSFD 186 Query: 171 AARAWQAAHALL 182 + + A+L Sbjct: 187 LKKEARDYVAIL 198
>PF07201#Hypersensitivity response secretion protein HrpJ Length = 293 Score = 31.7 bits (72), Expect = 0.003 Identities = 19/145 (13%), Positives = 36/145 (24%), Gaps = 13/145 (8%) Query: 63 TEELSHLEVIGSMAAMLNRGAKGELAEAVDEQAELYRKLHGAGND-SHVTQVLYGAGAPL 121 EL + + + ++L+ ++L L G + S ++L G Sbjct: 94 VPELEQKQNVSELLSLLSNSPN-------ISLSQLKAYLEGKSEEPSEQFKMLCGL---R 143 Query: 122 TNSGGVPWSAAYIDTIGEPTADLRSNIAAEARAKI-IYERLINVSD-DPDIRDALGFLMT 179 G P A + + + I S + L Sbjct: 144 DALKGRPELAHLSHLVEQALVSMAEEQGETIVLGARITPEAYRESQSGVNPLQPLRDTYR 203 Query: 180 REVSHQMSFEKALYAITANFPPGKL 204 V + FP G + Sbjct: 204 DAVMGYQGIYAIWSDLQKRFPNGDI 228
>OUTRMMBRANEA#Outer membrane protein A signature. Length = 346 Score = 30.3 bits (68), Expect = 0.010 Identities = 15/96 (15%), Positives = 28/96 (29%), Gaps = 10/96 (10%) Query: 138 YAVILAGWASNSKYAFLGAMR-------AAAQMVSYEISMGFALVLVLMTAGSLNLSEIV 190 Y GW+ F+ A Y+++ + G + Sbjct: 29 YTGAKLGWSQYHDTGFINNNGPTHENQLGAGAFGGYQVNPYVGFEMGYDWLGRMPY---K 85 Query: 191 GSQQHGFFAGHGVNFLSWNWLPLLPAFVVYFISGIA 226 GS ++G + GV + P+ +Y G Sbjct: 86 GSVENGAYKAQGVQLTAKLGYPITDDLDIYTRLGGM 121
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 61.2 bits (148), Expect = 2e-13 Identities = 20/73 (27%), Positives = 41/73 (56%) Query: 7 RRTRERILELSLKLFNEIGEPNVTTTTIAEEMEISPGNLYYHFRNKDDIINSIFAQFEQQ 66 + TR+ IL+++L+LF++ G + + IA+ ++ G +Y+HF++K D+ + I+ E Sbjct: 10 QETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESN 69 Query: 67 IERRLRFPEDHRP 79 I + P Sbjct: 70 IGELELEYQAKFP 82
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 98.6 bits (245), Expect = 6e-27 Identities = 67/256 (26%), Positives = 110/256 (42%), Gaps = 19/256 (7%) Query: 8 KVVLITGASRGIGRATAVLAAERGWDV-GINYARDAAAAQLTAQAVRDAGGRACIVAGDV 66 K+ ITGA++GIG A A A +G + ++Y + + +++ A DV Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKL--EKVVSSLKAEARHAEAFPADV 66 Query: 67 ANETDVVAMFDTVAAEFGRLDALVNNAGIVAPSMPLADMPADRLRRMFDTNVLGAYLCAR 126 + + + + E G +D LVN AG++ P + + + F N G + +R Sbjct: 67 RDSAAIDEITARIEREMGPIDILVNVAGVLRPG-LIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 127 EAARRLSTDRGGRGGAIVNVSSIASRLGSPNEYVD-YAGSKGAVDSLTIGLAKELGPHGV 185 ++ + R G+IV V S + G P + YA SK A T L EL + + Sbjct: 126 SVSKYM---MDRRSGSIVTVGSNPA--GVPRTSMAAYASSKAAAVMFTKCLGLELAEYNI 180 Query: 186 RVNAVRPGLIETEIHAS-----GGQPGRAARLGAQ----TPLGRAGEAQEIAEAIVWLLG 236 R N V PG ET++ S G PL + + +IA+A+++L+ Sbjct: 181 RCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVS 240 Query: 237 DAASYTTGALLDVGGG 252 A + T L V GG Sbjct: 241 GQAGHITMHNLCVDGG 256
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 31.9 bits (72), Expect = 0.010 Identities = 25/117 (21%), Positives = 41/117 (35%), Gaps = 13/117 (11%) Query: 690 PPPVLKDFPAVYLTSFHLPASNAALLDPLIARYPNLTAIDVAPILAQLQRMMLQVVGAVQ 749 P D P S+ + A LL + Y V A + ++ ++ Sbjct: 10 QMPTASDMPQ-NKVSWVPDPNRAVLLIHDMQNY------FVDAFTAGA-SPVTELSANIR 61 Query: 750 FLFAFTLAAGVLVLYTALAGSRDERVREAALLRALGASRAQVGAVQRAEFVVVGALA 806 L + G+ V+YTA GS++ R ALL G + ++ LA Sbjct: 62 KLKNQCVQLGIPVVYTAQPGSQNPDDR--ALLTDFWGPGLNSGPYEEK---IITELA 113
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 24.8 bits (54), Expect = 0.040 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 5/59 (8%) Query: 14 WLWLLVLPLIAMVWVPSYSKIEPQWFGF--PFFYWYQLLWVFISAVITAFVYFKTKNAW 70 W +LL++P+I ++ VP K+ + F +L +S I F+ F T + Sbjct: 168 WSYLLLIPMITIITVPFLMKLLKKEVRIKGHFDIKGIIL---MSVGIVFFMLFTTSYSI 223
>SHIGARICIN#Ribosome inactivating protein family signature. Length = 289 Score = 29.0 bits (65), Expect = 0.014 Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 7/73 (9%) Query: 33 PFVGFDTDRSHGALLRFYADFAAP---AVLDQHDSLD-PVMESALEDPQRRILVDLAAQT 88 V F GA Y F + A+ + D P++ S L QR L+ L Sbjct: 23 GDVSFRL---SGATSSSYGVFISNLRKALPYERKLYDIPLLRSTLPGSQRYALIHLTNYA 79 Query: 89 RQSLAKWLDDSDV 101 ++++ +D ++V Sbjct: 80 DETISVAIDVTNV 92
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 129 bits (324), Expect = 2e-38 Identities = 88/254 (34%), Positives = 138/254 (54%), Gaps = 15/254 (5%) Query: 4 LQGKRALITGGSRGIGAAIAKRLAADGADVAITYEKSAERAQAVVAGIEALGRRAVAIQA 63 ++GK A ITG ++GIG A+A+ LA+ GA +A + + E+ + VV+ ++A R A A A Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIA-AVDYNPEKLEKVVSSLKAEARHAEAFPA 64 Query: 64 DSADPVAVRNAVDRAAEVLGGLDILVNNAGIFRAGAVDDLTLDDIDATLNVNVRAVIVAS 123 D D A+ R +G +DILVN AG+ R G + L+ ++ +AT +VN V AS Sbjct: 65 DVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 124 QAAARHL--GEGGRIVSTGSCLATRVPDAGMSLYAASKAALIGWTQGLARDLGARGITVN 181 ++ ++++ G IV+ GS VP M+ YA+SKAA + +T+ L +L I N Sbjct: 125 RSVSKYMMDRRSGSIVTVGSN-PAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCN 183 Query: 182 IVHPGSTDTDMNPA--DGEHADAQRSRMAIQQY---------GKADDVAALVAFVVGPEG 230 IV PGST+TDM + E+ Q + +++ + K D+A V F+V + Sbjct: 184 IVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQA 243 Query: 231 RSINGTGLTIDGGA 244 I L +DGGA Sbjct: 244 GHITMHNLCVDGGA 257
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 51.9 bits (124), Expect = 1e-10 Identities = 31/199 (15%), Positives = 69/199 (34%), Gaps = 7/199 (3%) Query: 1 MAERGRPRSFD-KEAALDRAMEVFWRLGYEGASMTDLTAAMGIASPSLYAAFGSKEALF- 58 MA + + + + ++ LD A+ +F + G S+ ++ A G+ ++Y F K LF Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60 Query: 59 ---RQALEHYRATEGQEIWGGVERAASAYDAVQSYLMDTARVFTRRSKPAGCLIVLSALH 115 + + E + S + +++++ RR + Sbjct: 61 EIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEII-FHKCEF 119 Query: 116 PAERSDMVRQTLIGMREGTVDALRERLAQGVATGEISAHANLDAIARYYVTVQQGMSIQA 175 E + +V+Q + + D + + L + + A A G+ Sbjct: 120 VGEMA-VVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENW 178 Query: 176 RDGASRRDLEAIAQAALAA 194 DL+ A+ +A Sbjct: 179 LFAPQSFDLKKEARDYVAI 197
>cloacin#Cloacin signature. Length = 551 Score = 30.5 bits (68), Expect = 0.001 Identities = 15/62 (24%), Positives = 18/62 (29%) Query: 44 VYGTVNIWGGGGGRDWDRGRRDYHHWDGDRGNRGNGWWRGGGRRGDWNEGGGGGHGRGDG 103 + G G GGG G ++ G G W G G G GG G Sbjct: 20 INGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGG 79 Query: 104 GG 105 Sbjct: 80 NL 81
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 31.8 bits (72), Expect = 0.008 Identities = 30/126 (23%), Positives = 45/126 (35%), Gaps = 12/126 (9%) Query: 44 VVLLVVLAAGLVLGAVTTERGTRLAWQAAGKVLGTRLA---GTLEGGSLATGVRLRGFAW 100 ++LL+ ++AG+VL A R A A R G G GV + W Sbjct: 14 ILLLMGVSAGMVLLAFPASRDDSAAQTLARFEAQLRFVQQRGLQTGQFF--GVSVHPDRW 71 Query: 101 -----TSPDGTGTEVRIDRLDGRWALTRAPWRLSIAY-LRAGTIDVRIAPG-PSTPSTTP 153 + DG D G L R++ + + G +++ A G TP P Sbjct: 72 QFLVLEARDGADPAPADDGWSGYRWLPLRAGRVATSGSIAGGKLNLAFAQGEAWTPGDNP 131 Query: 154 QDLSLP 159 L P Sbjct: 132 DVLIFP 137
>SYCECHAPRONE#Gram-negative bacterial type III secretion SycE chaperone signature. Length = 130 Score = 25.8 bits (56), Expect = 0.010 Identities = 8/28 (28%), Positives = 16/28 (57%) Query: 18 KPTLEEEQRKGRSLLWDKQPIDLEERAE 45 KP L ++ G +LW++QP++ + Sbjct: 75 KPILSWDEVGGHPVLWNRQPLNSLDNNS 102
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 43.8 bits (103), Expect = 4e-07 Identities = 50/269 (18%), Positives = 96/269 (35%), Gaps = 19/269 (7%) Query: 13 ALLAALAHAPLVHADVTTRDDAGNTVTLPAPAQRVISLAPHATELVYAAG----GGAKLV 68 LL A+A +PL+ T A + R+++L EL+ A G G A + Sbjct: 11 RLLTAMALSPLLWQMNTAHAAAID-------PNRIVALEWLPVELLLALGIVPYGVADTI 63 Query: 69 GTVTYSDYPAAAQAVPRVGDNKALDLERIAALKPDLIVV-WRHGNAERQTDALRALHIPL 127 + P +V VG +LE + +KP +V +G + + Sbjct: 64 NYRLWVSEPPLPDSVIDVGLRTEPNLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFN 123 Query: 128 FFSEPKHLDDVSSSLRRLGTLLGTQPTADAAAAAFTRDIATLRARYAAR--PPVTMFFQV 185 F + L SL + LL Q A+ A + I +++ R+ R P+ + + Sbjct: 124 FSDGKQPLAMARKSLTEMADLLNLQSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLI 183 Query: 186 WDRPLTTLNGTHLINEVFELCGGRNVFASLKPL--APTVTDEAVLAANPEAIVTTSAGAT 243 R + L E+ + G N + + V+ + + A ++ Sbjct: 184 DPRHMLVFGPNSLFQEILDEYGIPNAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHD-- 241 Query: 244 RSNEPLPSLARWRAWPALTAVARNNLFAI 272 +++ + +L W A+ V + Sbjct: 242 -NSKDMDALMATPLWQAMPFVRAGRFQRV 269
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 52.9 bits (127), Expect = 2e-09 Identities = 45/143 (31%), Positives = 61/143 (42%), Gaps = 23/143 (16%) Query: 21 VDDGKSTLIGRLLYDSKAVLSDQLSALSRAKNKRTVGDELDLALLTDGLEAEREQGITID 80 VD GK+TL LLY+S A+ + L T TD ER++GITI Sbjct: 12 VDAGKTTLTESLLYNSGAI-----TELGSVDKGTTR---------TDNTLLERQRGITIQ 57 Query: 81 VAYRYFATAKRKFIIADTPGHEQYTRNMVTGASTAHAAIVLIDATRITVENGVVQLLPQT 140 F K I DTPGH + + S AI+LI A + VQ QT Sbjct: 58 TGITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISA----KDG--VQ--AQT 109 Query: 141 KRHSAIVKLLGLQHVIVAINKMD 163 + ++ +G+ I INK+D Sbjct: 110 RILFHALRKMGIP-TIFFINKID 131
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 29.0 bits (64), Expect = 0.032 Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 4/78 (5%) Query: 89 EEVIDFRDRRAQELGAELVVGHVEDSIKRGTVVLRRETDSRNAAQAVTLLETIEQHGYTA 148 E + F DR + L A V ++I L+ ++ AA+A + A Sbjct: 171 EAYMRFLDREMEGLTAAYNVKLFTEAISS----LQIRMNTLTAAKASIEAAAANKAREQA 226 Query: 149 LIGGARRDEEKARAKERI 166 R+ EE+AR + I Sbjct: 227 AAEAKRKAEEQARQQAAI 244
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 104 bits (260), Expect = 3e-29 Identities = 72/249 (28%), Positives = 118/249 (47%), Gaps = 12/249 (4%) Query: 6 QVAVVTGSSRGIGAEIARQLARDGFRVVVNYAGSAGPAREVVDAIVADGGHAIAVQANVA 65 ++A +TG+++GIG +AR LA G + + +VV ++ A+ HA A A+V Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAA-VDYNPEKLEKVVSSLKAEARHAEAFPADVR 67 Query: 66 DPAAVAALFDAAQHAFGGLDVVVNSAGVMKLATIADCDDALFDETLAINVKGTFNVCREA 125 D AA+ + + G +D++VN AGV++ I D ++ T ++N G FN R Sbjct: 68 DSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSV 127 Query: 126 ARRVRD--GGCIINLSTSVIGMRMPTYGVYVASKAAVESLTQVLAQEMRGRGIRVNAVAP 183 ++ + D G I+ + ++ G+ + Y +SKAA T+ L E+ IR N V+P Sbjct: 128 SKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSP 187 Query: 184 GPVATELFLQ------GKSPELVERLAKLN---PLERLGQPDDIARVVAFLAGPNGAWIN 234 G T++ G + L PL++L +P DIA V FL I Sbjct: 188 GSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHIT 247 Query: 235 GQILRANGG 243 L +GG Sbjct: 248 MHNLCVDGG 256
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 628 bits (1620), Expect = 0.0 Identities = 175/685 (25%), Positives = 297/685 (43%), Gaps = 77/685 (11%) Query: 53 RYRNIGISAHIDAGKTTTTERILFYTGVSHKIGEVHDGAATMDWMEQGQERGITITSAAT 112 + NIG+ AH+DAGKTT TE +L+ +G ++G V G D ++RGITI + T Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 113 TAFWKGMAGNYPEHRINIIDTPGHVDFTIEVERSMRVLDGACMVYDSVGGVQPQSETVWR 172 + W+ ++NIIDTPGH+DF EV RS+ VLDGA ++ + GVQ Q+ ++ Sbjct: 62 SFQWEN-------TKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFH 114 Query: 173 QANKYKVPRIAFVNKMDRIGADFFRVQKQIGERLKGVAVPIQIPIGAEDHFQGVVDLVKM 232 K +P I F+NK+D+ G D V + I E+L V Q V M Sbjct: 115 ALRKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQ----------KVELYPNM 164 Query: 233 KAIVWDDESQGVKFTYEDIPANLVELAHEWREKMVEAAAEASEELLEKYLHDHESLTEDE 292 + + Q + E +++LLEKY+ +SL E Sbjct: 165 CVTNFTESEQ------------------------WDTVIEGNDDLLEKYM-SGKSLEALE 199 Query: 293 IKAALRQRTIANEIVPMLCGSAFKNKGVQAMLDAVIDYLPSPVDVPAILGHDFADPEKPA 352 ++ R + P+ GSA N G+ +++ + + S Sbjct: 200 LEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSSTH---------------- 243 Query: 353 ERHPSDDEPFSSLAFKIMTDPFVGQLIFFRVYSGVVESGDTVLNATKDKKERLGRILQMH 412 FKI +L + R+YSGV+ D+V + K+K ++ + Sbjct: 244 ----RGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKI-KITEMYTSI 298 Query: 413 ANERKEIKEVRAGDIAAAVG--LK-EATTGDTLCDPQKPIILEKMEFPEPVISQAVEPKT 469 E +I + +G+I LK + GDT PQ+ E++E P P++ VEP Sbjct: 299 NGELCKIDKAYSGEIVILQNEFLKLNSVLGDTKLLPQR----ERIENPLPLLQTTVEPSK 354 Query: 470 KADQEKMGLALNRLAQEDPSFRVQTDEESGQTIISGMGELHLEILVDRMKREFGVEATVG 529 +E + AL ++ DP R D + + I+S +G++ +E+ ++ ++ VE + Sbjct: 355 PQQREMLLDALLEISDSDPLLRYYVDSATHEIILSFLGKVQMEVTCALLQEKYHVEIEIK 414 Query: 530 KPQVAYRETVRTTAADVEGKFVKQSGGRGQYGHAVITLEPNP-GKGYEFLDEIKGGVIPR 588 +P V Y E A E + + +++ P P G G ++ + G + + Sbjct: 415 EPTVIYMERPLKKA---EYTIHIEVPPNPFWASIGLSVSPLPLGSGMQYESSVSLGYLNQ 471 Query: 589 EFIPAVDKGITETLKSGVLAGYPVVDVKVHLTFGSYHDVDSNENAFRMAGSMAFKEAMRK 648 F AV +GI + G L G+ V D K+ +G Y+ S FRM + ++ ++K Sbjct: 472 SFQNAVMEGIRYGCEQG-LYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQVLKK 530 Query: 649 AKPVLLEPMMAVEVETPEDFMGNVMGDLSSRRGIVQGMEDIAGGGGKLVRAEVPLAEMFG 708 A LLEP ++ ++ P++++ D + + ++ E+P + Sbjct: 531 AGTELLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ--LKNNEVILSGEIPARCIQE 588 Query: 709 YSTSLRSATQGRATYTMEFKHYAET 733 Y + L T GR+ E K Y T Sbjct: 589 YRSDLTFFTNGRSVCLTELKGYHVT 613
>cloacin#Cloacin signature. Length = 551 Score = 47.4 bits (112), Expect = 1e-07 Identities = 36/79 (45%), Positives = 39/79 (49%) Query: 316 GGHGNGGGGGGGGGGGGGGGGGGGGGGGGGGGNGGGNGGGNGGGGNGGGNGGGNGGGNGG 375 GG G G G G GG G G GGG +G G N G G G+G GGG+G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 376 GNGGGNGGGNGGGNGGGNG 394 GNGGGNG GG GGN Sbjct: 63 GNGGGNGNSGGGSGTGGNL 81 Score = 47.0 bits (111), Expect = 1e-07 Identities = 36/78 (46%), Positives = 39/78 (50%) Query: 313 GNGGGHGNGGGGGGGGGGGGGGGGGGGGGGGGGGGNGGGNGGGNGGGGNGGGNGGGNGGG 372 G+G GH G G GG G G GGG G G N GG G+G GGG+G G Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHG 63 Query: 373 NGGGNGGGNGGGNGGGNG 390 NGGGNG GG GGN Sbjct: 64 NGGGNGNSGGGSGTGGNL 81 Score = 45.9 bits (108), Expect = 3e-07 Identities = 36/82 (43%), Positives = 38/82 (46%), Gaps = 4/82 (4%) Query: 268 GDGGGHGNGGGHGDGGGGHGNGGGHGDGGGGHGNGGGHGNGGGGNGNGGGHGNGGGGGGG 327 GDG GH G G G G GG G+G N N GGG G+G GGG Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSEN----NPWGGGSGSGIHWGGG 59 Query: 328 GGGGGGGGGGGGGGGGGGGGNG 349 G G GGG G GGG G GGN Sbjct: 60 SGHGNGGGNGNSGGGSGTGGNL 81 Score = 45.5 bits (107), Expect = 4e-07 Identities = 32/78 (41%), Positives = 35/78 (44%) Query: 330 GGGGGGGGGGGGGGGGGGNGGGNGGGNGGGGNGGGNGGGNGGGNGGGNGGGNGGGNGGGN 389 GG G G G G NGG G G GGG + G GGG+G G G G G+ Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 390 GGGNGGGNGGGHGNGGGG 407 G G G GN GG GG Sbjct: 63 GNGGGNGNSGGGSGTGGN 80 Score = 45.5 bits (107), Expect = 4e-07 Identities = 34/79 (43%), Positives = 39/79 (49%) Query: 220 GTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGGHGGGGDGDGGGHGNGGGH 279 G G G + G S G GG +G G GG + G G S GGG G G G G GH Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 280 GDGGGGHGNGGGHGDGGGG 298 G+GGG +GGG G GG Sbjct: 63 GNGGGNGNSGGGSGTGGNL 81 Score = 45.1 bits (106), Expect = 5e-07 Identities = 32/80 (40%), Positives = 38/80 (47%), Gaps = 3/80 (3%) Query: 307 NGGGGNGNGGGHGNGGGGGGGGGGGGGGGGGGGGGGGGGGGN---GGGNGGGNGGGGNGG 363 +GG G G+ G + G GG G G GGG G G N GGG+G G GG G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 364 GNGGGNGGGNGGGNGGGNGG 383 GG G +GGG+G G Sbjct: 62 HGNGGGNGNSGGGSGTGGNL 81 Score = 45.1 bits (106), Expect = 6e-07 Identities = 34/81 (41%), Positives = 38/81 (46%) Query: 348 NGGGNGGGNGGGGNGGGNGGGNGGGNGGGNGGGNGGGNGGGNGGGNGGGNGGGHGNGGGG 407 +GG G N G + GN G G G G G +G G N GG G H GG G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 408 HGNGGGNGNGNGSGGAGNGGA 428 HGNGGGNGN G G G + Sbjct: 62 HGNGGGNGNSGGGSGTGGNLS 82 Score = 44.7 bits (105), Expect = 6e-07 Identities = 34/78 (43%), Positives = 38/78 (48%) Query: 195 GTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGG 254 G G G + G S G GG +G G GG + G G S GG SG G GG SG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 255 GTSGGGGHGGGGDGDGGG 272 G GG G+ GGG G GG Sbjct: 63 GNGGGNGNSGGGSGTGGN 80 Score = 44.7 bits (105), Expect = 8e-07 Identities = 31/79 (39%), Positives = 34/79 (43%) Query: 295 GGGGHGNGGGHGNGGGGNGNGGGHGNGGGGGGGGGGGGGGGGGGGGGGGGGGGNGGGNGG 354 GG G G+ G + G G GGG G G GGG G G GGG+G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 355 GNGGGGNGGGNGGGNGGGN 373 GNGGG G G G GG Sbjct: 63 GNGGGNGNSGGGSGTGGNL 81 Score = 44.3 bits (104), Expect = 9e-07 Identities = 40/114 (35%), Positives = 47/114 (41%), Gaps = 2/114 (1%) Query: 144 NGGSGGGTSGSGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSG 203 +GG G G + S G GG +G G GG + G G S GG SG G GG SG Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 204 GGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTS 257 G GG + GG SG G G ++ G T G G S G S Sbjct: 62 HGNGGGNGNSGGGSGTG--GNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALS 113 Score = 44.3 bits (104), Expect = 9e-07 Identities = 36/81 (44%), Positives = 42/81 (51%), Gaps = 2/81 (2%) Query: 334 GGGGGGGGGGGGGGNGGGNGGGNGGGGNGGGNGGGNGGGNGGGNGGGNGGGNGGGNGGGN 393 GG G G G +G NGG G G GG + G GGG+G +G GGG+ Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSG--SGIHWGGGS 60 Query: 394 GGGNGGGHGNGGGGHGNGGGN 414 G GNGGG+GN GGG G GG Sbjct: 61 GHGNGGGNGNSGGGSGTGGNL 81 Score = 43.9 bits (103), Expect = 1e-06 Identities = 33/79 (41%), Positives = 38/79 (48%) Query: 190 GTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGG 249 G G G + G S G GG +G G GG + G G S GG SG G GG SG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 250 GTSGGGTSGGGGHGGGGDG 268 G GG + GGG G GG+ Sbjct: 63 GNGGGNGNSGGGSGTGGNL 81 Score = 43.9 bits (103), Expect = 1e-06 Identities = 40/110 (36%), Positives = 46/110 (41%), Gaps = 2/110 (1%) Query: 143 GNGGSGGGTSGSGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTS 202 G G + G S SG GG +G G GG + G G S GG SG G GG SG G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 203 GGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTS 252 GG + GG SG G G ++ G T G G S G S Sbjct: 66 GGNGNSGGGSGTG--GNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALS 113 Score = 43.9 bits (103), Expect = 1e-06 Identities = 30/80 (37%), Positives = 34/80 (42%) Query: 282 GGGGHGNGGGHGDGGGGHGNGGGHGNGGGGNGNGGGHGNGGGGGGGGGGGGGGGGGGGGG 341 GG G G+ G G G GGG +G G + GGG G G GGG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 342 GGGGGGNGGGNGGGNGGGGN 361 G GGG G G G GG + Sbjct: 63 GNGGGNGNSGGGSGTGGNLS 82 Score = 43.5 bits (102), Expect = 1e-06 Identities = 33/79 (41%), Positives = 38/79 (48%) Query: 185 GTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGG 244 G G G + G S G GG +G G GG + G G S GG SG G GG SG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 245 GTSGGGTSGGGTSGGGGHG 263 G GG + GG SG GG+ Sbjct: 63 GNGGGNGNSGGGSGTGGNL 81 Score = 43.5 bits (102), Expect = 1e-06 Identities = 31/79 (39%), Positives = 34/79 (43%) Query: 205 GTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGGHGG 264 G G G + G S G GG +G G GG + G G S GG SG G GGG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 265 GGDGDGGGHGNGGGHGDGG 283 G G G G G G G Sbjct: 63 GNGGGNGNSGGGSGTGGNL 81 Score = 43.5 bits (102), Expect = 1e-06 Identities = 39/110 (35%), Positives = 45/110 (40%), Gaps = 2/110 (1%) Query: 150 GTSGSGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGG 209 G G G + G S G GG +G G GG + G G S GG SG G GG SG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 210 GTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGG 259 G GG + GG SG G G ++ G T G G S G Sbjct: 63 GNGGGNGNSGGGSGTG--GNLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110 Score = 43.5 bits (102), Expect = 2e-06 Identities = 30/78 (38%), Positives = 33/78 (42%) Query: 300 GNGGGHGNGGGGNGNGGGHGNGGGGGGGGGGGGGGGGGGGGGGGGGGGNGGGNGGGNGGG 359 G+G GH G G G G GGG G G GGG G+G GGG+G G Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHG 63 Query: 360 GNGGGNGGGNGGGNGGGN 377 GG G G G GG Sbjct: 64 NGGGNGNSGGGSGTGGNL 81 Score = 43.5 bits (102), Expect = 2e-06 Identities = 35/79 (44%), Positives = 43/79 (54%), Gaps = 1/79 (1%) Query: 239 GGTSGGGTSGGGTSGGGTSGGGGHGGGGDGDGGGHGNGGGHGDGGGGHGNGGGHGDGGGG 298 GG G +G ++ G +GG G G G G G + GGG G+G G GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWG-GGSG 61 Query: 299 HGNGGGHGNGGGGNGNGGG 317 HGNGGG+GN GGG+G GG Sbjct: 62 HGNGGGNGNSGGGSGTGGN 80 Score = 43.5 bits (102), Expect = 2e-06 Identities = 38/82 (46%), Positives = 43/82 (52%), Gaps = 4/82 (4%) Query: 210 GTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGGHGGGGDGD 269 G G G + G S G GG +G G GG + G G S GG SG G H GG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGG---- 58 Query: 270 GGGHGNGGGHGDGGGGHGNGGG 291 G GHGNGGG+G+ GGG G GG Sbjct: 59 GSGHGNGGGNGNSGGGSGTGGN 80 Score = 43.2 bits (101), Expect = 2e-06 Identities = 29/89 (32%), Positives = 38/89 (42%) Query: 346 GGNGGGNGGGNGGGGNGGGNGGGNGGGNGGGNGGGNGGGNGGGNGGGNGGGNGGGHGNGG 405 GG+G G+ G G G GG + G GGG+G G G G+G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 406 GGHGNGGGNGNGNGSGGAGNGGANGVGNG 434 G G G +G G+G+GG + A V G Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFG 91 Score = 42.4 bits (99), Expect = 3e-06 Identities = 38/102 (37%), Positives = 44/102 (43%), Gaps = 2/102 (1%) Query: 160 GTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGG 219 G G G + G S G GG +G G GG + G G S GG SG G GG SG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 220 GTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGG 261 G GG + GG SG G G ++ G T G GG Sbjct: 63 GNGGGNGNSGGGSGTG--GNLSAVAAPVAFGFPALSTPGAGG 102 Score = 42.4 bits (99), Expect = 3e-06 Identities = 34/81 (41%), Positives = 46/81 (56%), Gaps = 1/81 (1%) Query: 375 GGNGGGNGGGNGGGNGGGNGGGNGGGHGNGGGGHGNGGGNGNGNGSGGAGNGGANGVGNG 434 GG+G G+ G +G NGG G G GG G+G + N GG+G+G G G+G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLG-VGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 435 RGNGGNSGNAGGSNGNGGGGA 455 GNGG +GN+GG +G GG + Sbjct: 62 HGNGGGNGNSGGGSGTGGNLS 82 Score = 41.6 bits (97), Expect = 7e-06 Identities = 31/79 (39%), Positives = 35/79 (44%) Query: 200 GTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGG 259 G G G + G S G GG +G G GG + G G S GG SG G GG SG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 260 GGHGGGGDGDGGGHGNGGG 278 G GG G+ GG G Sbjct: 63 GNGGGNGNSGGGSGTGGNL 81 Score = 40.9 bits (95), Expect = 1e-05 Identities = 37/102 (36%), Positives = 43/102 (42%), Gaps = 2/102 (1%) Query: 165 GTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGG 224 G G G + G S G GG +G G GG + G G S GG SG G GG SG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 225 GTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGGHGGGG 266 G GG + GG SG G G ++ G G GG Sbjct: 63 GNGGGNGNSGGGSGTG--GNLSAVAAPVAFGFPALSTPGAGG 102 Score = 39.3 bits (91), Expect = 3e-05 Identities = 24/82 (29%), Positives = 36/82 (43%) Query: 432 GNGRGNGGNSGNAGGSNGNGGGGAGNGGGSGGANGTGGHGNGGGNGNGNGSGGAGNGGAN 491 G+GRG+ + + G+ G G G GGG+ +G N G G+G+G G G Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHG 63 Query: 492 GVGNGHGTGNGNGGGHGNGGSS 513 G +G G+G G + Sbjct: 64 NGGGNGNSGGGSGTGGNLSAVA 85 Score = 39.3 bits (91), Expect = 4e-05 Identities = 34/96 (35%), Positives = 46/96 (47%), Gaps = 8/96 (8%) Query: 402 GNGGGGHGNGGGNGNGNGSGGAGNGGANGVGNGRGNGGNSGNAGGSNGN-GGGGAGNGGG 460 G G GH G + +GN +GG G G G + G+ S N GGG+G+G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGG-------GASDGSGWSSENNPWGGGSGSGIH 55 Query: 461 SGGANGTGGHGNGGGNGNGNGSGGAGNGGANGVGNG 496 GG +G G G G +G G+G+GG + A V G Sbjct: 56 WGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFG 91 Score = 38.9 bits (90), Expect = 5e-05 Identities = 32/110 (29%), Positives = 43/110 (39%) Query: 98 GNGGGNGNGSGGNNGNGAVGPAGVGGTTGGTSGSTSGTGRGGNASGNGGSGGGTSGSGTS 157 G+G G+ G+ +GN GP G+G G + GS + G+G GSG Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHG 63 Query: 158 GGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTS 207 GG +G G GT G ++ G T G G S G S Sbjct: 64 NGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALS 113 Score = 38.5 bits (89), Expect = 6e-05 Identities = 30/79 (37%), Positives = 37/79 (46%) Query: 356 NGGGGNGGGNGGGNGGGNGGGNGGGNGGGNGGGNGGGNGGGNGGGHGNGGGGHGNGGGNG 415 +GG G G G + GN G G G G G +G G N G G G GGG+G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 416 NGNGSGGAGNGGANGVGNG 434 +GNG G +GG +G G Sbjct: 62 HGNGGGNGNSGGGSGTGGN 80 Score = 38.2 bits (88), Expect = 7e-05 Identities = 29/84 (34%), Positives = 36/84 (42%) Query: 381 NGGGNGGGNGGGNGGGNGGGHGNGGGGHGNGGGNGNGNGSGGAGNGGANGVGNGRGNGGN 440 +GG G N G + G G G G G +G+G S GG +G G G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 441 SGNAGGSNGNGGGGAGNGGGSGGA 464 GN GG+ +GGG G S A Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVA 85 Score = 37.4 bits (86), Expect = 1e-04 Identities = 37/114 (32%), Positives = 45/114 (39%), Gaps = 2/114 (1%) Query: 119 AGVGGTTGGTSGSTSGTGRGGNASGNGGSGGGTSGSGTSGGGTSGGGTSGGGTSGGGTSG 178 +G G T ++ G +G G GG + GSG S GG SG G GG SG Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 179 GGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTS 232 G GG + GG SG G G ++ G T G G S G S Sbjct: 62 HGNGGGNGNSGGGSGTG--GNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALS 113 Score = 37.4 bits (86), Expect = 1e-04 Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 2/81 (2%) Query: 363 GGNGGGNGGGNGGGNGGGNGG-GNGGGNGGGN-GGGNGGGHGNGGGGHGNGGGNGNGNGS 420 GG+G G+ G +G NGG G GG + G G + GGG G+G G G+G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 421 GGAGNGGANGVGNGRGNGGNS 441 G G G +G G+G G ++ Sbjct: 63 GNGGGNGNSGGGSGTGGNLSA 83 Score = 37.0 bits (85), Expect = 2e-04 Identities = 39/112 (34%), Positives = 46/112 (41%), Gaps = 6/112 (5%) Query: 132 TSGTGRGGNASGNGGSG---GGTSGSGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSG 188 + G GRG N + SG GG +G G GG + G G S GG SG G GG SG Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 189 GGTSGGGTSGG---GTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTS 237 G GG + G GT G ++ G T G G S G S Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALS 113 Score = 35.1 bits (80), Expect = 8e-04 Identities = 28/80 (35%), Positives = 35/80 (43%), Gaps = 2/80 (2%) Query: 427 GANGVGNGRGNGGNSGNAGGSNGNGGGGAGNGGGSGGANGTGGHGNGGGNGNGNGSGGAG 486 G +G G+ G SGN G G G G GSG + + GGG+G+G GG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGW--SSENNPWGGGSGSGIHWGGGS 60 Query: 487 NGGANGVGNGHGTGNGNGGG 506 G G G G+G GG Sbjct: 61 GHGNGGGNGNSGGGSGTGGN 80 Score = 33.5 bits (76), Expect = 0.002 Identities = 32/110 (29%), Positives = 40/110 (36%) Query: 78 GVGNGGAGAGGSGSGNGNGSGNGGGNGNGSGGNNGNGAVGPAGVGGTTGGTSGSTSGTGR 137 G G G S SGN NG G G G G+ +G + GG+ G Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHG 63 Query: 138 GGNASGNGGSGGGTSGSGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTS 187 G +GN G G GT G+ ++ G T G G S G S Sbjct: 64 NGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALS 113 Score = 31.2 bits (70), Expect = 0.010 Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 1/68 (1%) Query: 450 NGGGGAGNGGGSGGANGTGGHGNGGGNGNGNGSGGAGNGGANGV-GNGHGTGNGNGGGHG 508 +GG G G+ G+ +G G G G S G+G N G G G+G GGG G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 509 NGGSSGGN 516 +G G Sbjct: 62 HGNGGGNG 69
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 145 bits (367), Expect = 3e-40 Identities = 91/408 (22%), Positives = 173/408 (42%), Gaps = 15/408 (3%) Query: 88 VMLWLVATGFFMQTLDATIVNTALPSMAASLGESPLRMQSVVIAYSLTMAVMIPVSGWLA 147 +++WL FF L+ ++N +LP +A + P V A+ LT ++ V G L+ Sbjct: 15 ILIWLCILSFF-SVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLS 73 Query: 148 DTFGTRRVFFSAILVFSLGSLLCANAHTLTQ-LVAFRVVQGVGGAMLLPVGRLAVLRTFP 206 D G +R+ I++ GS++ H+ L+ R +QG G A + + V R P Sbjct: 74 DQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIP 133 Query: 207 AERYLPALSFVAIPGLIGPLIGPTLGGWLVKIASWHWIFLINVPVGVAGCIATFYSMPDS 266 E A + +G +GP +GG + HW +L+ +P+ + + Sbjct: 134 KENRGKAFGLIGSIVAMGEGVGPAIGGMIAH--YIHWSYLLLIPMITIITVPFLMKLLKK 191 Query: 267 RNPAAGRFDLKGYLLLTIGMVAISLSLDGLADLGMQHAAVLVLLILSLACFVAYGLYAVR 326 G FD+KG +L+++G+V L + L++ +LS FV + + Sbjct: 192 EVRIKGHFDIKGIILMSVGIVFFMLFTT------SYSISFLIVSVLSFLIFVKHIR---K 242 Query: 327 APQPIFSLELFKIHTFSVGLLGNLFARIGSGAMPYLIPLLLQVSLGYSAFEAG-LMMLPV 385 P L K F +G+L ++P +++ S E G +++ P Sbjct: 243 VTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPG 302 Query: 386 AAAGMFSKRIITRLITQHGYRKVLLANTIMVGVMMASFALMRDTVPVWVKVVHLALFGGF 445 + + I L+ + G VL + V + + + +T ++ ++ + + GG Sbjct: 303 TMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGL 362 Query: 446 NSMQFTAMNTLTLKDLGTGGASSGNSLFSLVQMLSMSLGVTVAGALLA 493 + + T ++T+ L A +G SL + LS G+ + G LL+ Sbjct: 363 SFTK-TVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLS 409
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 40.6 bits (95), Expect = 1e-05 Identities = 48/211 (22%), Positives = 78/211 (36%), Gaps = 10/211 (4%) Query: 33 VLLAALAIVLDGFDGQLIGFAIPVLIREWGITRGA---FAPAVAAGLVGMGIGSACAGIV 89 +++ + LD LI +P L+R+ + + +A + + G + Sbjct: 7 LIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGAL 66 Query: 90 ADRYGRRQAVIGSVFLFGIATCAIGFAPDVATIAMLRFCAGLGIGGALPTATTMTAEYTP 149 +DR+GRR ++ S+ + + AP + + + R AG+ G A A+ T Sbjct: 67 SDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGI-TGATGAVAGAYIADITD 125 Query: 150 ARRRTMMVTATIVCVPLGGMLAGLFAHEVLPRYGWRGLFFAGGALPLVLGFVLVRALPES 209 R C GM+AG ++ + FFA AL L F+ L Sbjct: 126 GDERARHFGFMSACFGF-GMVAGPVLGGLMGGFSPHAPFFAAAALNG-LNFLTGCFLLPE 183 Query: 210 PRYLARRPARWPELGAL----LARMQRPVAP 236 RRP R L L AR VA Sbjct: 184 SHKGERRPLRREALNPLASFRWARGMTVVAA 214
>PF04183#IucA / IucC family Length = 580 Score = 30.6 bits (69), Expect = 0.035 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 9/60 (15%) Query: 106 VFASFLHFLKFRRDQ------RIWQDRSADDIIADVLNQHPQAKGRFT-FKLYQPLPPRS 158 F + L F+ + R +Q +++D + +HPQ RF F L++P R Sbjct: 484 HFVTVLRFISPLMVRLGVPERRFYQL--LAAVLSDYMKKHPQMSERFALFSLFRPQIIRV 541
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 33.8 bits (77), Expect = 1e-04 Identities = 13/61 (21%), Positives = 21/61 (34%) Query: 66 CHIPRAVYPDTAKPLTRPATVLVRALMTTSGEAQNVTVTTSSRNAAADRAAVEAMTHASC 125 + YP A+ L V V+ +T G NV + ++ +R AM Sbjct: 160 LSRNQPQYPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAKPANMFEREVKNAMRRWRY 219 Query: 126 V 126 Sbjct: 220 E 220
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 37.9 bits (88), Expect = 6e-06 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 5/67 (7%) Query: 28 RLAGFTLIELMIVLAIVGVVAAYAIPAYQDYLARSRVGEGLALASSARLAVADNAASGAS 87 + GFTL+E+M+V+ I+GV+A+ +P + + + + +NA Sbjct: 6 KQRGFTLLEIMVVIVIIGVLASLVVPNLM-----GNKEKADKQKAVSDIVALENALDMYK 60 Query: 88 LDGGYSP 94 LD + P Sbjct: 61 LDNHHYP 67
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 30.9 bits (69), Expect = 0.014 Identities = 27/93 (29%), Positives = 36/93 (38%), Gaps = 7/93 (7%) Query: 292 QIGDDVQYALEGSIFIAGAVVQWLRDGVGLIKTAAEIEALAASVPHTDGVYLVPAFAGLG 351 QI + A + SI A A + K AE +A + Y +PA + Sbjct: 201 QIRMNTLTAAKASI-EAAAANKAREQAAAEAKRKAEEQARQQAAIRAANTYAMPANGSVV 259 Query: 352 APHWNARARGSVFGVTRGTSAAHLARAALDAIA 384 A A RG + AA LA+A DAIA Sbjct: 260 AT---AAGRGL---IQVAQGAASLAQAISDAIA 286
>ENTEROTOXINA#Heat-labile enterotoxin A chain signature. Length = 258 Score = 29.2 bits (65), Expect = 0.030 Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 16/81 (19%) Query: 244 PADELARDAGL-------AVERGIVVNAQLETSARGIYAAGDVAVFPSALSGQLVRQETW 296 P DE+ R GL +RG +N L ARG G V +S L + Sbjct: 30 PPDEIKRSGGLMPRGHNEYFDRGTQMNINLYDHARGT-QTGFVRYDDGYVSTSLSLR--- 85 Query: 297 HGAETQAHVAARNMLGAAEAY 317 AH+A +++L Y Sbjct: 86 -----SAHLAGQSILSGYSTY 101
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 32.0 bits (73), Expect = 0.003 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 4/48 (8%) Query: 120 IERPAYRRAALIVTAHDTARVRDALAAAIARG----ETVVTMVTDIGG 163 +ER A R +A A + + + +AAAI G E +MV DIGG Sbjct: 121 VERRAIRESAQGAGAREVFLIEEPMAAAIGAGLPVSEATGSMVVDIGG 168
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 105 bits (264), Expect = 9e-30 Identities = 72/247 (29%), Positives = 113/247 (45%), Gaps = 14/247 (5%) Query: 3 ALVTGGSGALGQAICTALAQAGHEVWVHANRHLEQAQAVAQRIVAAGGAAHAIAFDVTDA 62 A +TG + +G+A+ LA G + + + E+ + V + A A A DV D+ Sbjct: 11 AFITGAAQGIGEAVARTLASQGAHI-AAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDS 69 Query: 63 DATLAALKPFIDET-PVQILVNNAGIHDDAPMAGMSRQQWHSVIDVTLNGFFNVTQPLLL 121 A E P+ ILVN AG+ + +S ++W + V G FN ++ + Sbjct: 70 AAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSK 129 Query: 122 PMIRTRRGRIVNIASVAGVTGNRGQANYAAAKAGLIGATKSLSLELASRGITVNAVAPGI 181 M+ R G IV + S A YA++KA + TK L LELA I N V+PG Sbjct: 130 YMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPGS 189 Query: 182 IASPM-----ADQAFPAERIKQL-------VPAQRAGRPDEVAAMVAYLVSDAAAYVTGQ 229 + M AD+ + IK +P ++ +P ++A V +LVS A ++T Sbjct: 190 TETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHITMH 249 Query: 230 VLSVNGG 236 L V+GG Sbjct: 250 NLCVDGG 256
>PF03309#Bvg accessory factor Length = 271 Score = 164 bits (418), Expect = 4e-52 Identities = 58/272 (21%), Positives = 97/272 (35%), Gaps = 40/272 (14%) Query: 6 LLIDAGNSRIKWALADA---RRSLVDTGAFGHTRDGGADPDWSHLPRPRGAWISNVAGAD 62 L ID N+ L +V + AD I + G D Sbjct: 3 LAIDVRNTHTVVGLISGSGDHAKVVQQWRIRTEPEVTADE--------LALTIDGLIGDD 54 Query: 63 ---------------VAARLDALLDARWPGLPRTTIRARPVQCGVTNGYTTPEQLGSDRW 107 V + +L+ WP +P I V+ G+ P+++G+DR Sbjct: 55 AERLTGASGLSTVPSVLHEVRVMLEQYWPNVPHVLIEPG-VRTGIPLLVDNPKEVGADRI 113 Query: 108 AGLIGAHAAFPGEHLLIATFGTATTLEALRADGRFTGGLIAPGWALMMRALGTHTAQLPT 167 + A+ + +++ FG++ ++ + A G F GG IAPG + A +A L Sbjct: 114 VNCLAAYHKYGTAAIVV-DFGSSICVDVVSAKGEFLGGAIAPGVQVSSDAAAARSAALRR 172 Query: 168 LTTDIASGLLAGAQAEPFQIDTPRSLSAGCLYAQAGLIE----RAWRDLVAAWQAPVRLV 223 + ++ +T + AG ++ AGL++ R D+ A V +V Sbjct: 173 VELTRPRSVIGK--------NTVECMQAGAVFGFAGLVDGLVNRIRDDVDGFSGADVAVV 224 Query: 224 LAGGAADDVARALTVAHTRHDALILSGLALIA 255 G A V L L L GL L+ Sbjct: 225 ATGHTAPLVLPDLRTVEHYDRHLTLDGLRLVF 256
>cdtoxinb#Cytolethal distending toxin B signature. Length = 269 Score = 25.3 bits (55), Expect = 0.023 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 9/54 (16%) Query: 11 PEATLDLQRLLDAAIAGERVVITQAGKQAVRLVPLRPIHPFGALEGQMWIADDF 64 AT QR LD A+AG V A R PL+ +GA Q+ +D F Sbjct: 218 AAATQTSQRTLDYAVAGNSV--------AFRPSPLQAGIVYGARRTQI-SSDHF 262
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 29.4 bits (66), Expect = 0.025 Identities = 89/362 (24%), Positives = 123/362 (33%), Gaps = 57/362 (15%) Query: 80 GIAADRFGDRRVLLTGLVATAAMLALMVCTIVPTAHAVPPLM--RVVAAMC-CVGLLGGS 136 G +DRFG R VLL L A A+M TA + L R+VA + G + G+ Sbjct: 64 GALSDRFGRRPVLLVSLAGAAVDYAIMA-----TAPFLWVLYIGRIVAGITGATGAVAGA 118 Query: 137 V--NGSSGRAVMRWFGERERGLAMSIRQTAVPLGGGLGAALLPSLASHAGFAAVFGALML 194 + + G R FG A P+ GGL P AA L Sbjct: 119 YIADITDGDERARHFG--FMSACFGFGMVAGPVLGGLMGGFSPHAPFF--AAAALNGLNF 174 Query: 195 LCAGSAALTWRWLHEPPAEPAAAHLAPHVTAPHAAQRPQAASPARNPLASGPVWRIVLGI 254 L L E H +R A NPLAS R + + Sbjct: 175 L------TGCFLLPE----------------SHKGERRPLRREALNPLASFRWARGMTVV 212 Query: 255 GLLCAPQFAVLTFATVFLHDFGRLG---------LAGISAAMVALQLGAMVMRVWSGRHT 305 L A F + V + G GIS A + L ++ + +G Sbjct: 213 AALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGI-LHSLAQAMITGPVA 271 Query: 306 DRHGNRRAYLRGSVFVAAGSFTLLAAATAGSPHVPLAAIVAILVFAGICVSAWHGVAYTE 365 R G RRA + G + G + LLA AT G P I+ +L GI + A + Sbjct: 272 ARLGERRALMLGMIADGTG-YILLAFATRGWMAFP---IMVLLASGGIGMPALQAM---- 323 Query: 366 LATLAGANHAGTALGMANTVVYLGLFATPLAIPPLLATS--SWS-VVWLAAALVAGATYP 422 L+ G G + L PL + A S +W+ W+A A + P Sbjct: 324 LSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAASITTWNGWAWIAGAALYLLCLP 383 Query: 423 LF 424 Sbjct: 384 AL 385
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 29.3 bits (65), Expect = 0.023 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 10/72 (13%) Query: 205 GTRFIATQEAHAIDDYKHAILNAKSSDIIYTNLFTGVHGNYIRESIEKAGLDPDALPESD 264 G RFI ++ AH +D+ + I+ GV Y R + G+ D+ P+S+ Sbjct: 350 GLRFITSEPAHVMDENGYP---------IHRPGIAGVETAYTRFITDILGVSADSRPDSN 400 Query: 265 KTKMN-FGSDKT 275 + +++ F SD T Sbjct: 401 EARLHEFLSDGT 412
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 87.9 bits (218), Expect = 1e-21 Identities = 82/355 (23%), Positives = 131/355 (36%), Gaps = 46/355 (12%) Query: 20 ACVAAAAPVHAQSSVSLYGQVDEWVGATKFPGGDRAWNV-----SGGGMSTSYWGLHGAE 74 A AA PV A + V+LYG + V ++ + A +G S G G E Sbjct: 7 ALTLAALPVAAMADVTLYGTIKAGVETSRSVAHNGAQAASVETGTGIVDLGSKIGFKGQE 66 Query: 75 DLGDGYKAIFTLESFFRAQNGQYGRFQGDTFFARNAYVGISSPYGTVTAGRLTTHLFLST 134 DLG+G KAI+ +E G + R +++G+ +G + GRL Sbjct: 67 DLGNGLKAIWQVEQKASIAGTDSG------WGNRQSFIGLKGGFGKLRVGRL-------- 112 Query: 135 ILFNPFYDSYTFSPMVYHVFLGLGTFPTYPSDQGAVGDSGWNNAVGYTSPSFGGLNFGAM 194 + D+ +P ++ A ++ + Y SP F GL+ Sbjct: 113 --NSVLKDTGDINPWD-------SKSDYLGVNKIAEPEARLISVR-YDSPEFAGLSGSVQ 162 Query: 195 YALGNQAGDNRSKKWSAQFNYANGPFAATAVYQYVNFNNGPQDLSALVTGMKSQGIALVG 254 YAL + AG + S+ + A FNY NG F Y + ++ V K Q LV Sbjct: 163 YALNDNAGRHNSESYHAGFNYKNGGFFVQYGGAYKRHHQVQEN----VNIEKYQIHRLVS 218 Query: 255 ATYDLKLVKLFGQYMYTKNDQVAGSWHVNTAQGGVSVPIG--VGNAMASYAY------SR 306 YD + + ++ ++ + + +Q V+ + GN +Y S Sbjct: 219 -GYDNDALYAS-VAVQQQDAKLVEENYSHNSQTEVAATLAYRFGNVTPRVSYAHGFKGSF 276 Query: 307 DAGGLDQTRQTWAVGYDYPLSKRTDVYAAYM---NDHISGLSTGNTFGAGIRAKF 358 DA + VG +Y SKRT + G G+R KF Sbjct: 277 DATNYNNDYDQVVVGAEYDFSKRTSALVSAGWLQEGKGESKFVSTAGGVGLRHKF 331
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 28.1 bits (62), Expect = 0.049 Identities = 10/53 (18%), Positives = 21/53 (39%) Query: 2 GTTIRDVARAAEVSIGTVSRALKNQPGLSEATRARIVGIAQQLGYDPAQLRPR 54 T++ ++A+AA V+ G + K++ L +L + P Sbjct: 31 STSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELELEYQAKFPG 83
>FLAGELLIN#Flagellin signature. Length = 507 Score = 53.1 bits (127), Expect = 1e-09 Identities = 53/366 (14%), Positives = 106/366 (28%), Gaps = 12/366 (3%) Query: 20 QAQLSQLYQQISSGVSLATPADNPLGAAQAVQLSMTSATLSQYASNQNAALSSLQKEDQT 79 Q+ LS +++SSG+ + + D+ G A A + + L+Q + N N +S Q + Sbjct: 21 QSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQASRNANDGISIAQTTEGA 80 Query: 80 LISVNNLLNSIHTVVIQAGDGSLSDSDRSALSTQLQGYRDQLLTLANSTDGSGNYLFAGF 139 L +NN L + + +QA +G+ SDSD ++ ++Q +++ ++N T +G + + Sbjct: 81 LNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEIDRVSNQTQFNGVKVLSQD 140 Query: 140 QSATAPFSNAPGGGVTYSGDTGSRQVQIADTRSIAQGDNGANVFLSVPMLGSQPVPLAGA 199 G +T + + + G +G NV Sbjct: 141 NQMKIQVGANDGETIT---------IDLQKIDVKSLGLDGFNVNGPKEATVGDLKSSFKN 191 Query: 200 ANTGTGTIGGVTITSPSAASNAHQFTIAFGGTAAAPTYTVTDNTVVPPTTTTAQPYSDGA 259 G S A + + Sbjct: 192 VTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTDDAENNTAVDLFK 251 Query: 260 -GIALGNGLSVPVSGKPAPGDTFTVTPAPQAGTDVFAALDTMIAALKVPISSNTTAATAL 318 + G T + T KV + N T Sbjct: 252 TTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGKVSTTINGEKVTLT 311 Query: 319 ANAMTTGTTKLNNMMTNVLT--VQASVGGREQEIKAMQAVNQTNTLQVSSDLADLTSTNM 376 +T G ++ + V G+ + + + +++ S Sbjct: 312 VADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSDLEANNAVKGESKIT 371 Query: 377 VATISQ 382 V Sbjct: 372 VNGAEY 377
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 206 bits (525), Expect = 7e-61 Identities = 143/444 (32%), Positives = 231/444 (52%), Gaps = 15/444 (3%) Query: 3 NSLMNLGVSGLNAALWGLTTTGQNISNAATPGYSVERPVYAEASGQYTSSGYMPQGVNTV 62 +SL+N +SGLNAA L T NIS+ GY+ + + A+A+ + G++ GV Sbjct: 1 SSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVS 60 Query: 63 TVQRQYSQYLSDQLNGAQTQGGALSTWYSLVTQLNNYIGSPTAGISTAITSYFTGMQNVA 122 VQR+Y ++++QL AQTQ L+ Y +++++N + + T+ ++T + +FT +Q + Sbjct: 61 GVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLSTSTSSLATQMQDFFTSLQTLV 120 Query: 123 NSASDSSVRQTAMSNAQTLANQITAAGQQYDALRQSVNTQLTSTVTQINAYTAQIAQLNQ 182 ++A D + RQ + ++ L NQ Q + VN + ++V QIN Y QIA LN Sbjct: 121 SNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASLND 180 Query: 183 QIA--AASSQGQPPNQLMDQRDLAVSNLSNLAGVQVVRNSDG-YSVFMSGGTPLVVADKS 239 QI+ G PN L+DQRD VS L+ + GV+V G Y++ M+ G LV + Sbjct: 181 QISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQGSTA 240 Query: 240 YQLATVTSPSDPSELTVVSQGIAGATPQGPNQFLSDASLSGGTLGGLLAFRSQTLDPAEA 299 QLA V S +DPS TV N + + L+ G+LGG+L FRSQ LD Sbjct: 241 RQLAAVPSSADPSRTTVAYVDGTAG-----NIEIPEKLLNTGSLGGILTFRSQDLDQTRN 295 Query: 300 QLGAIATSFAAQVNAQNALGIDLSGKVGGNLFSTGAPITYANQGNTGNAALSVSFANAAQ 359 LG +A +FA N Q+ G D +G G + F+ G P N N G+ A+ + +A+ Sbjct: 296 TLGQLALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASA 355 Query: 360 PTTSDYTLAYDGTNYTLTDRATGTVVGTSTSMPASIGGLNFS----FSSGSMSAGDKFTV 415 +DY +++D + +T A+ T T T P + G + F +G+ + D FT+ Sbjct: 356 VLATDYKISFDNNQWQVTRLASNT---TFTVTPDANGKVAFDGLELTFTGTPAVNDSFTL 412 Query: 416 QPTRGALNGFGLTTSNGSAIAAAA 439 +P A+ + ++ + IA A+ Sbjct: 413 KPVSDAIVNMDVLITDEAKIAMAS 436 Score = 86.5 bits (214), Expect = 6e-20 Identities = 53/151 (35%), Positives = 81/151 (53%), Gaps = 23/151 (15%) Query: 514 GVTVTVSGTPAVGDTFKVAPNTGGTN-----------------------DGSNALALSKL 550 G+ +T +GTPAV D+F + P + D N AL L Sbjct: 395 GLELTFTGTPAVNDSFTLKPVSDAIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDL 454 Query: 551 VNSKSFGNGSATLTGAYANYVNGIGNTASQLKSSSAAQTALVGQITQAQQSVSGVNQNEE 610 ++ G+ + AYA+ V+ IGN + LK+SSA Q +V Q++ QQS+SGVN +EE Sbjct: 455 QSNSKTVGGAKSFNDAYASLVSDIGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEE 514 Query: 611 AANLMQYQQLYQANAKVIQTASTLFQTVLGL 641 NL ++QQ Y ANA+V+QTA+ +F ++ + Sbjct: 515 YGNLQRFQQYYLANAQVLQTANAIFDALINI 545
>FLGFLGJ#Flagellar protein FlgJ signature. Length = 313 Score = 223 bits (568), Expect = 3e-73 Identities = 127/315 (40%), Positives = 173/315 (54%), Gaps = 33/315 (10%) Query: 16 ALDVQGFDALRAQAKQSPQAGAKAVAGQFDAMFTQMMLKSMRDASPDGGLFDSHTSKMYT 75 A D Q + L+A+A + P A + VA Q + MF QMMLKSMRDA P GLF S +++YT Sbjct: 12 AWDAQSLNELKAKAGEDPAANIRPVARQVEGMFVQMMLKSMRDALPKDGLFSSEHTRLYT 71 Query: 76 SMLDQQLAQQMST-RGIGVADALMKQLLRNAGAGAGSDTAADVGAGGMGGMGAGGLGTAG 134 SM DQQ+AQQM+ +G+G+A+ ++KQ+ S AA + Sbjct: 72 SMYDQQIAQQMTAGKGLGLAEMMVKQMTPEQPLPEESTPAAPM----------------- 114 Query: 135 NEGSLAAMNAMARAYANAANNGGLAGARGYSAGSALTPPVKGASGVQDADAFVDRLAAPA 194 N L+ P S D+ AF+ +L+ PA Sbjct: 115 ---------KFPLETVVRYQNQALS-----QLVQKAVPRNYDDSLPGDSKAFLAQLSLPA 160 Query: 195 QAASATTGIPARFIVGQAALESGWGKREIRAADGSTSYNVFGIKANKGWTGRTVSALTTE 254 Q AS +G+P I+ QAALESGWG+R+IR +G SYN+FG+KA+ W G TTE Sbjct: 161 QLASQQSGVPHHLILAQAALESGWGQRQIRRENGEPSYNLFGVKASGNWKGPVTEITTTE 220 Query: 255 YVNGTPRRVVAKFRAYDSYEHAMTDYANLLKNNPRYAGVLSASRSVEGFAHGMQKAGYAT 314 Y NG ++V AKFR Y SY A++DY LL NPRYA V +A+ + E A +Q AGYAT Sbjct: 221 YENGEAKKVKAKFRVYSSYLEALSDYVGLLTRNPRYAAVTTAASA-EQGAQALQDAGYAT 279 Query: 315 DPNYAKKLILIMQQI 329 DP+YA+KL ++QQ+ Sbjct: 280 DPHYARKLTNMIQQM 294
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 368 bits (947), Expect = e-128 Identities = 156/362 (43%), Positives = 213/362 (58%), Gaps = 18/362 (4%) Query: 31 AAPAHAERLKDLAQIQGVRDNPLIGYGLVVGLDGTGDQTMQTPFTTQTLANMLANLGISI 90 A A R+KD+A +Q RDN LIGYGLVVGL GTGD +PFT Q++ ML NLGI+ Sbjct: 23 PAQADTSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDSLRSSPFTEQSMRAMLQNLGITT 82 Query: 91 NNGSANGGPSSLNNMQLKNVAAVMVTATLPPFARPGEALDVTVSSLGNAKSLRGGTLLLT 150 G +N KN+AAVMVTA LPPFA PG +DVTVSSLG+A SLRGG L++T Sbjct: 83 QGGQSN----------AKNIAAVMVTANLPPFASPGSRVDVTVSSLGDATSLRGGNLIMT 132 Query: 151 PLKGADGQVYALAQGNMAVGGAGASANGSRVQVNQLAAGRIVGGAIVERAVPNAIAQMNG 210 L GADGQ+YA+AQG + V G A + + + + R+ GAI+ER +P+ Sbjct: 133 SLSGADGQIYAVAQGALIVNGFSAQGDAATLTQGVTTSARVPNGAIIERELPSKFKDSV- 191 Query: 211 VLQLQLNDMDYGTAQRIVSAVNS----NFGPGTATALDGRTIQLAAPADSAQQVAFMARL 266 L LQL + D+ TA R+ VN+ +G A D + I + P + MA + Sbjct: 192 NLVLQLRNPDFSTAVRVADVVNAFARARYGDPIAEPRDSQEIAVQKPRVA-DLTRLMAEI 250 Query: 267 QNLDVSPDKAAAKVILNARTGSIVMNQMVTLQSCAVAHGNLSVVVNTQPVVSQPGPFSNG 326 +NL V D AKV++N RTG+IV+ V + AV++G L+V V P V QP PFS G Sbjct: 251 ENLTVETD-TPAKVVINERTGTIVIGADVRISRVAVSYGTLTVQVTESPQVIQPAPFSRG 309 Query: 327 QTVVAQQSQIQLKQDNGALKMVTAGANLADVVKALNTLGATPADLMSILQAMKAAGALRA 386 QT V Q+ I Q+ + + G +L +V LN++G +++ILQ +K+AGAL+A Sbjct: 310 QTAVQPQTDIMAMQEGSKVA-IVEGPDLRTLVAGLNSIGLKADGIIAILQGIKSAGALQA 368 Query: 387 DL 388 +L Sbjct: 369 EL 370
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 212 bits (541), Expect = 9e-72 Identities = 128/222 (57%), Positives = 162/222 (72%), Gaps = 7/222 (3%) Query: 14 AACAVAVAALAGCAQIPRDPIIQQPMTAQPPMPMSMQAPGSIY---NPGYAG-RPLFEDQ 69 A ++ V +L GCA IP P++Q +AQP + A GSI+ P G +PLFED+ Sbjct: 10 AISSLLVLSLTGCAWIPSTPLVQGATSAQPVPGPTPVANGSIFQSAQPINYGYQPLFEDR 69 Query: 70 RPRNIGDILTIMIAENINATKSSGANTNRQGNTDFNVPTAG-FLGGLF--AKANLSATGA 126 RPRNIGD LTI++ EN++A+KSS AN +R G T+F T +L GLF A+A++ A+G Sbjct: 70 RPRNIGDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVPRYLQGLFGNARADVEASGG 129 Query: 127 NKFAATGGASAANTFNGTITVTVTNVLPNGNLVVSGEKQMLINQGNEFVRFSGVVNPNTI 186 N F GGA+A+NTF+GT+TVTV VL NGNL V GEKQ+ INQG EF+RFSGVVNP TI Sbjct: 130 NTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGEKQIAINQGTEFIRFSGVVNPRTI 189 Query: 187 SGANSVYSTQVADAKIEYSSKGYINEAETMGWLQRFFLNIAP 228 SG+N+V STQVADA+IEY GYINEA+ MGWLQRFFLN++P Sbjct: 190 SGSNTVPSTQVADARIEYVGNGYINEAQNMGWLQRFFLNLSP 231
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 43.8 bits (103), Expect = 4e-07 Identities = 9/42 (21%), Positives = 23/42 (54%) Query: 220 EASNVNVVQELVNMIQTQRAYEINSKAVTTSDQMLQTVTQMK 261 S VN+ +E N+ + Q+ Y N++ + T++ + + ++ Sbjct: 505 SISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINIR 546 Score = 38.8 bits (90), Expect = 2e-05 Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 14/80 (17%) Query: 4 SLYIAAAGMNAQQAQMDVISNNLANTSTNGFKASRAVFEDLLYQTIRQPGANSTQQTELP 63 + A +G+NA QA ++ SNN+++ + G+ + + + L Sbjct: 3 LINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIM--------------AQANSTLG 48 Query: 64 SGLQLGTGVQQVATERLYTQ 83 +G +G GV +R Y Sbjct: 49 AGGWVGNGVYVSGVQREYDA 68
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 29.2 bits (65), Expect = 0.020 Identities = 9/57 (15%), Positives = 21/57 (36%), Gaps = 2/57 (3%) Query: 194 ADVDPNVV--VTPNSLEGSNVNPVTAMVAMIDNARAFQLQSKLIQTADQNEQTANQL 248 + NVV ++ S VN + + + ++++QTA+ + Sbjct: 489 SATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545 Score = 28.0 bits (62), Expect = 0.038 Identities = 9/34 (26%), Positives = 18/34 (52%) Query: 4 LIYTAMTGASQSLDQQAIVANNLANASTTGFRAQ 37 LI AM+G + + +NN+++ + G+ Q Sbjct: 3 LINNAMSGLNAAQAALNTASNNISSYNVAGYTRQ 36
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 35.7 bits (82), Expect = 4e-04 Identities = 16/50 (32%), Positives = 23/50 (46%) Query: 364 HGTLQGSALENSNVDLTSQLVNLITAQRNYQANAQTIKTQQTVDQTLINL 413 L S V+L + NL Q+ Y ANAQ ++T + LIN+ Sbjct: 496 VTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545 Score = 32.2 bits (73), Expect = 0.004 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 3/74 (4%) Query: 6 GLSGLSGASNALDVIGNNIANANTVGFKSSTAQFADMYANSVATSVNTQIGIGTTLNSVQ 65 +SGL+ A AL+ NNI++ N G+ T A + A +G G ++ VQ Sbjct: 7 AMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGG---WVGNGVYVSGVQ 63 Query: 66 QQFGQGTINTTNSS 79 +++ N ++ Sbjct: 64 REYDAFITNQLRAA 77
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 26.8 bits (59), Expect = 0.031 Identities = 10/38 (26%), Positives = 17/38 (44%) Query: 102 NVDPVQEMVNMISASRSYQANVETLNTAKTLMLKTLTI 139 V+ +E N+ + Y AN + L TA + + I Sbjct: 508 GVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 30.9 bits (69), Expect = 0.009 Identities = 37/189 (19%), Positives = 64/189 (33%), Gaps = 10/189 (5%) Query: 20 FALAAALWIAAPAAHADDGMIVIPGRGETAETALAHANAASGGQFGGNAGVASASDAQRA 79 +A+ A + A AA G+I + + A++ A A G V + A Sbjct: 250 YAMPANGSVVATAA--GRGLIQVAQGAASLAQAISDAIAVLGRVLASAPSVMAVGFASLT 307 Query: 80 AGAATGSAYAAQPASQMVVTSVPPPAAAPAPATVPVYVAARANAGYGATPRAADPAAIAM 139 + T + Q + A P +V + A+A+ R + Sbjct: 308 YSSRTAEQWQDQTPDSVRYALGMDAAKLGLPPSVNLNAVAKASGTVDLPMRLTN------ 361 Query: 140 VVAGTAEPASNPARP--APQAAAAARLAAARAASAATAPRTAAASARPAPATVASQPATP 197 G S + + A R+AA A + + +A P + PA+P Sbjct: 362 EARGNTTTLSVVSTDGVSVPKAVPVRMAAYNATTGLYEVTVPSTTAEAPPLILTWTPASP 421 Query: 198 PGQQDPETI 206 PG Q+P + Sbjct: 422 PGNQNPSST 430
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 85.3 bits (211), Expect = 2e-21 Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 2/114 (1%) Query: 5 ILLVDDHAIVRQGIRQLLIDRGVARDVTEAENGGDAMAAVDKQEFDVILLDISLPDTNGI 64 IL+ DD A +R + Q L G DV N + + D+++ D+ +PD N Sbjct: 6 ILVADDDAAIRTVLNQALSRAGY--DVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 65 EVLKRLKRKLTRTPVLMFSMYREDQYAVRALKAGAAGYLSKTVNAAQMIGAIQQ 118 ++L R+K+ PVL+ S A++A + GA YL K + ++IG I + Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 57.1 bits (138), Expect = 3e-13 Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 2/79 (2%) Query: 9 AAALVYDPKGGDAAPRVVAKGYGVLAEMIVARAHDAGLYVHTAPEMV-SLLMQVDLDDRI 67 A ++Y G P V K + + A + G+ + + +L +D I Sbjct: 268 AIGILYKR-GETPLPLVTFKYTDAQVQTVRKIAEEEGVPILQRIPLARALYWDALVDHYI 326 Query: 68 PPQLYQAVADLLAWLYALD 86 P + +A A++L WL + Sbjct: 327 PAEQIEATAEVLRWLERQN 345
>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE signature. Length = 103 Score = 65.1 bits (158), Expect = 4e-17 Identities = 45/112 (40%), Positives = 68/112 (60%), Gaps = 9/112 (8%) Query: 8 ANVSGIGSVLQQMQSMAAQASGGVASPTAALAGSGAATAGTFASAMKASLDKISGDQQHA 67 + + GI V+ Q+Q+ A A + P + +FA + A+LD+IS Q A Sbjct: 1 SAIQGIEGVISQLQATAMSARAQESLPQPTI---------SFAGQLHAALDRISDTQTAA 51 Query: 68 LGEAKAFEVGAPNISLNDVMVDMQKANIGLQFGLQVRNKLVSAYNDIMQMSV 119 +A+ F +G P ++LNDVM DMQKA++ +Q G+QVRNKLV+AY ++M M V Sbjct: 52 RTQAEKFTLGEPGVALNDVMTDMQKASVSMQMGIQVRNKLVAAYQEVMSMQV 103
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 482 bits (1241), Expect = e-167 Identities = 256/551 (46%), Positives = 363/551 (65%), Gaps = 24/551 (4%) Query: 51 ISRMKGNPKLPFVIAVAFAIAAITALVLWSRAPDYRVLYSNLSDRDGGAIIAALQQANVP 110 ++R++ NP++P ++A + A+A + A+VLW++ PDYR L+SNLSD+DGGAI+A L Q N+P Sbjct: 16 LNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIP 75 Query: 111 YKFADAGGAILVPSGQVHETRLKLAAMGLPKGGSVGFELMDNQKFGISQFAEQINYQRAL 170 Y+FA+ GAI VP+ +VHE RL+LA GLPKGG+VGFEL+D +KFGISQF+EQ+NYQRAL Sbjct: 76 YRFANGSGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKFGISQFSEQVNYQRAL 135 Query: 171 EGELQRTIESINAVRGARVHLAIPKPSVFVRDKEAPSASVFVDLYPGRVLDEGQVQAITR 230 EGEL RTIE++ V+ ARVHLA+PKPS+FVR++++PSASV V L PGR LDEGQ+ A+ Sbjct: 136 EGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQISAVVH 195 Query: 231 MVSSGVPDMPAKNVTIVDQDGNLLTQTASASG-LDASQLKYVQQVEHNTQKRIDAILAPI 289 +VSS V +P NVT+VDQ G+LLTQ+ ++ L+ +QLK+ VE Q+RI+AIL+PI Sbjct: 196 LVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPI 255 Query: 290 FGAGNARSQVSADLDFSKIEQTSESYGPNGTPQQAAIRSQQTSSATELAQGGASGVPGAL 349 G GN +QV+A LDF+ EQT E Y PNG +A +RS+Q + + ++ G GVPGAL Sbjct: 256 VGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGAL 315 Query: 350 SNTPPQPASAPIVA-----GNGQNGPQT---------TPVSDRKDQTTNYELDKTIRHTE 395 SN P P API N QN PQT P S ++++T+NYE+D+TIRHT+ Sbjct: 316 SNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRSTQRNETSNYEVDRTIRHTK 375 Query: 396 QPMGSVKRLSVAVVVNYQPVADAKGHVTMQPLPPAKLAQVEQLVKDAMGYDAKRGDSVNV 455 +G ++RLSVAVVVNY+ +AD K PL ++ Q+E L ++AMG+ KRGD++NV Sbjct: 376 MNVGDIERLSVAVVVNYKTLADGKP----LPLTADQMKQIEDLTREAMGFSDKRGDTLNV 431 Query: 456 VNSAFSTVSDPYADLPWWRQPDMIAMAKEAAKWLGIAAAAAALYFMFVRPAMRRAFPPPE 515 VNS FS V + +LP+W+Q I A +WL + A L+ VRP + R + Sbjct: 432 VNSPFSAVDNTGGELPFWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVRPQLTRRVEEAK 491 Query: 516 PAAPALAAPEDTVALDGLPAPEKAAEEADPLLLGFENEKNRYERNLDYARTIARQDPKIV 575 A + + A E + + L N++ E R ++ DP++V Sbjct: 492 AAQEQAQVRQ-----ETEEAVEVRLSKDEQLQQRRANQRLGAEVMSQRIREMSDNDPRVV 546 Query: 576 ATVVKNWVSDE 586 A V++ W+S++ Sbjct: 547 ALVIRQWMSND 557
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 294 bits (753), Expect = e-100 Identities = 111/324 (34%), Positives = 187/324 (57%) Query: 5 GLTKSALLLMSIGEEEAAQVFKFLAPREVQKIGVAMAALKNVTREQVEEVLQDFVKEAEQ 64 G K+A+LL+SIG E +++VFK+L+ E++ + +A L+ +T E + VL +F + Sbjct: 17 GKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKDNVLLEFKELMMA 76 Query: 65 HTALSLDSNEYIRSVLTKALGEDKAGVLIDRILQGSDTSGIEGLKWMDSGAVAELIKNEH 124 + +Y R +L K+LG KA +I+ + + E ++ D + I+ EH Sbjct: 77 QEFIQKGGIDYARELLEKSLGTQKAVDIINNLGSALQSRPFEFVRRADPANILNFIQQEH 136 Query: 125 PQIIATILVHLDRDQASEIASCFTERLRNDVLLRIATLDGIQPAALRELDDVLTGLLSGS 184 PQ IA IL +LD +AS I S ++ +V RIA +D P +RE++ VL L+ Sbjct: 137 PQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVREVERVLEKKLASL 196 Query: 185 DNLKRSPMGGIRTAAEILNFMTSVHEEGVLESVRQYDADLAQKIIDQMFVFENLLDLEDR 244 + + GG+ EI+N E+ ++ES+ + D +LA++I +MFVFE+++ L+DR Sbjct: 197 SSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEIKKKMFVFEDIVLLDDR 256 Query: 245 AIQMVLKEVESETLIVALKGAPPALRQKFLANMSQRAAELLAEDLDARGPVRVSEVETQQ 304 +IQ VL+E++ + L ALK +++K NMS+RAA +L ED++ GP R +VE Q Sbjct: 257 SIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDMEFLGPTRRKDVEESQ 316 Query: 305 RRILQIVRNLAESGQIAIGGKAED 328 ++I+ ++R L E G+I I E+ Sbjct: 317 QKIVSLIRKLEEQGEIVISRGGEE 340
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 112 bits (282), Expect = 6e-33 Identities = 70/213 (32%), Positives = 115/213 (53%), Gaps = 10/213 (4%) Query: 15 YQRWEMASFDPPPPPPPPDDA------AAAAAALAEELQRVRDAAHAEGHAAGHVEGQAL 68 ++ W PP P A +L ++L +++ AH +G+ AG EG+ Sbjct: 7 WKTWTPDDLAPPQAEFVPIVEPEETIIEEAEPSLEQQLAQLQMQAHEQGYQAGIAEGRQQ 66 Query: 69 GYQAGFEQGREQGFEAGQAEAREQAAQLAA----LAASFREAVSTVEHDLAADLAQLALD 124 G++ G+++G QG E G AEA+ Q A + A L + F+ + ++ +A+ L Q+AL+ Sbjct: 67 GHKQGYQEGLAQGLEQGLAEAKSQQAPIHARMQQLVSEFQTTLDALDSVIASRLMQMALE 126 Query: 125 IAQQVVRQHVKHDPAALVAAVRDVLAAEPALSGAPHLAVNPADLPVVEAYLQDDLDTLGW 184 A+QV+ Q D +AL+ ++ +L EP SG P L V+P DL V+ L L GW Sbjct: 127 AARQVIGQTPTVDNSALIKQIQQLLQQEPLFSGKPQLRVHPDDLQRVDDMLGATLSLHGW 186 Query: 185 NVRTDASIERGGCRAHAATGEVDATLPTRWQRV 217 +R D ++ GGC+ A G++DA++ TRWQ + Sbjct: 187 RLRGDPTLHPGGCKVSADEGDLDASVATRWQEL 219
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 92.3 bits (229), Expect = 5e-24 Identities = 36/112 (32%), Positives = 61/112 (54%), Gaps = 11/112 (9%) Query: 145 FETGSATLTPQGKLILDQMAAALAKM--QNRTVDIIGHTDNSGNRTSNIALSQARADAVK 202 F ATL P+G+ LDQ+ + L+ + ++ +V ++G+TD G+ N LS+ RA +V Sbjct: 223 FNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSVV 282 Query: 203 GYLITKSIPPQQMTTTGVGPDQPIAPNDMADGRAR---------NRRIEFRV 245 YLI+K IP +++ G+G P+ N + + R +RR+E V Sbjct: 283 DYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEV 334
>THERMOLYSIN#Thermolysin metalloprotease (M4) family signature. Length = 544 Score = 28.4 bits (63), Expect = 0.023 Identities = 15/50 (30%), Positives = 19/50 (38%), Gaps = 6/50 (12%) Query: 16 AAADAVQIEATVKQYYSLSHADASCRFSRTDDNGMPLDPRVHH-RAYRDA 64 AA DA V YY H S D + + VH+ R Y +A Sbjct: 297 AAVDAHYYAGVVYDYYKNVHGRLS-----YDGSNAAIRSTVHYGRGYNNA 341
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 76.9 bits (189), Expect = 1e-20 Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 9/84 (10%) Query: 9 QNRTVDIIGHTDNSGNRTSNIALSQARADAVKGYLITKSIPPQQMTTTGVGPDQPIAPND 68 ++ +V ++G+TD G+ N LS+ RA +V YLI+K IP +++ G+G P+ N Sbjct: 251 KDGSVVVLGYTDRIGSDAYNQGLSERRAQSVVDYLISKGIPADKISARGMGESNPVTGNT 310 Query: 69 TADGRAR---------NRRIEFRV 83 + + R +RR+E V Sbjct: 311 CDNVKQRAALIDCLAPDRRVEIEV 334
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 36.1 bits (83), Expect = 8e-04 Identities = 29/144 (20%), Positives = 57/144 (39%), Gaps = 25/144 (17%) Query: 915 SPEAAQAAASGQLASQLQGMAPAATTA---AMGLVSGGGAGAALGGLASAALPAAATALG 971 + +AAA +L +++ G + A G AA GL ++A+ A + L Sbjct: 263 ADTRTKAAAGVELTTKVLGNVGKGISQYIIAQRAAQGLSTSAAAAGLIASAVTLAISPLS 322 Query: 972 GAGVASALQTASSLSGAAKQV-----------------AGMVQAARQG---GLAALAAPA 1011 +A + A+ + +++ G + A+ LA++++ Sbjct: 323 FLSIADKFKRANKIEEYSQRFKKLGYDGDSLLAAFHKETGAIDASLTTISTVLASVSSGI 382 Query: 1012 ANAASGALQGALPGALPGVAGIAG 1035 + AA+ +L GA AL V + G Sbjct: 383 SAAATTSLVGAPVSAL--VGAVTG 404
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 34.1 bits (78), Expect = 0.001 Identities = 37/160 (23%), Positives = 65/160 (40%), Gaps = 6/160 (3%) Query: 51 ISADLHLPPGLAGLVAMLPQLGYAAGLALLVPLVDLLENRRLIVATLAVCAAALALPAFT 110 I+ D + PP V L ++ G A+ L D L +RL++ + + + Sbjct: 40 IANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVG 99 Query: 111 QSGAVFLLAT---LAAGAASSVIQMLVPMAASMAPEAQRGRAVGNVMSGLMLGILLSRPL 167 S L+ AGAA + +++ + A P+ RG+A G + S + +G + + Sbjct: 100 HSFFSLLIMARFIQGAGAA-AFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAI 158 Query: 168 ASLIAGSAGWRAFYLLAALADAAIAVVLALRLPARTPSIT 207 +IA W YLL I V ++L + I Sbjct: 159 GGMIAHYIHWS--YLLLIPMITIITVPFLMKLLKKEVRIK 196
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 54.4 bits (131), Expect = 4e-10 Identities = 23/189 (12%), Positives = 58/189 (30%), Gaps = 22/189 (11%) Query: 9 LKIDRRPIAPVPRRRRWARYAVAAALIVIAIGAGLALTGRPTVDTTSVTSAYPYQNDTQL 68 L++ P++ PR + ++++ V+ + Sbjct: 46 LELIETPVSRRPRLVAYFIMGFLVIAFILSVLG--------QVEIVAT------------ 85 Query: 69 NATGYVVPQ-RKAAVASKGQGRVEWLGVLEGTRVKKDEIIARLESNDVQASLAQARAQVQ 127 A G + R + V+ + V EG V+K +++ +L + +A + ++ + Sbjct: 86 -ANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLL 144 Query: 128 VSRANLGVAQAELKDAEIALRRTSTLAPKGAVPAAQLDIDTARVNKARATLDSDQAAIAS 187 +R Q + E+ L + + + + + Q Sbjct: 145 QARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQ 204 Query: 188 AEANAQAAQ 196 E N + Sbjct: 205 KELNLDKKR 213 Score = 51.8 bits (124), Expect = 2e-09 Identities = 42/234 (17%), Positives = 72/234 (30%), Gaps = 71/234 (30%) Query: 102 KKDEIIARLESNDVQASLAQARAQVQVSRANLGVAQAELKDAEIALRRTSTLAPKGAVPA 161 + + L + +A A++ V ++ L D +L K A+ Sbjct: 199 QNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFS-------SLLHKQAIAK 251 Query: 162 AQLDIDTARVNKARATLDSDQAAIASAEANAQAAQVAVDQ-------------------- 201 + + +A L ++ + E+ +A+ Sbjct: 252 HAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNI 311 Query: 202 ----------------TVIRAPFDGIV--LAKHANVGDNITPFSSASDSKGAVVTIA--- 240 +VIRAP V L H ++G VVT A Sbjct: 312 GLLTLELAKNEERQQASVIRAPVSVKVQQLKVH---------------TEGGVVTTAETL 356 Query: 241 -----DMETLEVEADVAESNIAKIRAEQPCEIQLDALPDLRF---AGRVSRIVP 286 + +TLEV A V +I I Q I+++A P R+ G+V I Sbjct: 357 MVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINL 410
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 44.1 bits (104), Expect = 7e-07 Identities = 36/172 (20%), Positives = 68/172 (39%), Gaps = 12/172 (6%) Query: 22 WLVLAVLFAVTTINYADRAAIAIAGPGLARALHLSHVQMGFIFSAFGWSYVIAQLPGGWL 81 WL + F+V + + ++ P +A + ++ +AF ++ I G L Sbjct: 18 WLCILSFFSVL-----NEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKL 72 Query: 82 LDRFGSRIVYAFSIFFWSLFTLLQGGIGFFGGAAAFALLFGLRFLVGAAEAPSFPANSRI 141 D+ G + + F I ++ IGF G + L+ RF+ GA A +FPA + Sbjct: 73 SDQLGIKRLLLFGIIINCFGSV----IGFVGHSFFSLLIMA-RFIQGAGAA-AFPALVMV 126 Query: 142 VSAWFPAPERGTASAIFNAAQYAATVVFAPLMGWLV-HAFGWQSVFAVMGVL 192 V A + E + + A P +G ++ H W + + + Sbjct: 127 VVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMIT 178
>INTIMIN#Intimin signature. Length = 939 Score = 28.5 bits (63), Expect = 0.010 Identities = 20/86 (23%), Positives = 31/86 (36%), Gaps = 5/86 (5%) Query: 15 RPPSGDNFSGAARSKPVGAAFEQRARQFLERHGLGFVAANV--TMRGGELDLVM--REPD 70 R +GD A G + + +L+ +G V G LD ++ + + Sbjct: 180 RSLNGDYAKDTALGI-AGNQASSQLQAWLQHYGTAEVNLQSGNNFDGSSLDFLLPFYDSE 238 Query: 71 GMLVFVEVRARRSTRHGGATASVGWR 96 ML F +V AR A G R Sbjct: 239 KMLAFGQVGARYIDSRFTANLGAGQR 264
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 88.3 bits (219), Expect = 1e-23 Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 4/110 (3%) Query: 1 MDKSMKILVVDDFPTMRRIVRNLLKELGYTNVDEAEDGAAGLARLRGGGFDFVISDWNMP 60 M + ILV DD +R ++ L GY V + A + G D V++D MP Sbjct: 1 MTGA-TILVADDDAAIRTVLNQALSRAGYD-VRITSNAATLWRWIAAGDGDLVVTDVVMP 58 Query: 61 NLDGLAMLKEIRADATLTHLPVLMVTAESKKENIIAAAQAGASGYVVKPF 110 + + +L I+ LPVL+++A++ I A++ GA Y+ KPF Sbjct: 59 DENAFDLLPRIKKA--RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPF 106
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 71.4 bits (175), Expect = 1e-15 Identities = 34/151 (22%), Positives = 65/151 (43%), Gaps = 15/151 (9%) Query: 1 MQKIKVLCVDDSALIRSLMTEIINSQP-DMTVVATAPDPLVARELIKQHNPDVLTLDVEM 59 M +L DD A IR+++ + ++ D+ + + A I + D++ DV M Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAAT---LWRWIAAGDGDLVVTDVVM 57 Query: 60 PRMDGLDFLEKLMRLRP-MPVVMVSSLTERGSEITLRALELGAVDFVTKPRVGIRDGMLD 118 P + D L ++ + RP +PV+++S+ ++A E GA D++ KP D Sbjct: 58 PDENAFDLLPRIKKARPDLPVLVMSAQNT--FMTAIKASEKGAYDYLPKP--------FD 107 Query: 119 YAEKLADKIRAASRARVRQAPQPQAAARSAD 149 E + RA + + R + + Sbjct: 108 LTELIGIIGRALAEPKRRPSKLEDDSQDGMP 138
>PF06580#Sensor histidine kinase Length = 349 Score = 46.4 bits (110), Expect = 3e-07 Identities = 21/151 (13%), Positives = 50/151 (33%), Gaps = 52/151 (34%) Query: 458 ELDKSLIERIIDPLT--HLVRNSLDHGIETVDKRVAAGKDAVGQLVLSAAHHGGNIVIEV 515 +++ ++++ + P+ LV N + HGI G+++L G + +EV Sbjct: 245 QINPAIMDVQVPPMLVQTLVENGIKHGIA--------QLPQGGKILLKGTKDNGTVTLEV 296 Query: 516 SDDGAGLNRERILAKAAKQGMQISENISDDEVWQLIFAPGFSTAETVTDVSGRGVGMDVV 575 + G+ + G G+ V Sbjct: 297 ENTGSLALKNTK--------------------------------------ESTGTGLQNV 318 Query: 576 KRNIQSMGG---HVEISSQAGRGTTTRIVLP 603 + +Q + G +++S + G +++P Sbjct: 319 RERLQMLYGTEAQIKLSEKQG-KVNAMVLIP 348
>FLAGELLIN#Flagellin signature. Length = 507 Score = 159 bits (403), Expect = 9e-46 Identities = 109/337 (32%), Positives = 160/337 (47%), Gaps = 4/337 (1%) Query: 58 INSNINSLVAQQNLNGSQNALSQAITRLSSGKRINSAADDAAGLAISTRMQTQINGLNQG 117 IN+N SL+ Q NLN SQ++LS AI RLSSG RINSA DDAAG AI+ R + I GL Q Sbjct: 4 INTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQA 63 Query: 118 VSNANDGVSMIQTASSALSSLTNSLQRIRQLAVQASTGTMSTTDQAALQQEVSQQIQEVN 177 NANDG+S+ QT AL+ + N+LQR+R+L+VQA+ GT S +D ++Q E+ Q+++E++ Sbjct: 64 SRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEID 123 Query: 178 RIASQTTYNGTNILDGSAGIVSFQVGANVGQTISLDLSQSMSAAKIGGGLVQKGQTVGTV 237 R+++QT +NG +L + QVGAN G+TI++DL + + G G TV Sbjct: 124 RVSNQTQFNGVKVLSQDNQ-MKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEATV 182 Query: 238 TGLSLDNNGAYTGSGATITAINVLSDGKGGYTFTDQNGGAISQTVAQSVFGANATTGT-- 295 L + A D G TD + V + TT Sbjct: 183 GDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTDDAE 242 Query: 296 -GTAVGNLTLQSGATGAGTSAAQQTAITNAINQINAVNKPATVSNLDISTVSGANVAMVS 354 TAV G + A AI K T + + G + Sbjct: 243 NNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGKVSTT 302 Query: 355 IDNALQTVNNVQAALGAAQNRFTAIATSQQAESTDLS 391 I+ T+ GAA + +S+ ++ ++ Sbjct: 303 INGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVN 339 Score = 96.3 bits (239), Expect = 1e-23 Identities = 72/358 (20%), Positives = 117/358 (32%), Gaps = 5/358 (1%) Query: 86 SSGKRINSAADDAAGLAISTRMQTQINGLNQGVSNANDGVSMIQTASSALSSLTNSLQRI 145 + G+ I ++ V + + + + Sbjct: 150 NDGETITIDLQKIDVKSLGLDGFNVNGPKEATVGDLKSSFKNVTGYDTYAVGANKYRVDV 209 Query: 146 RQLAVQASTGTMSTTDQAALQQEVSQQIQEVNRIASQTTYNGTNILDGSAGIVSFQVGAN 205 AV T + D+ + Q + + T GA Sbjct: 210 NSGAVVTDTTAPTVPDKVYVNAANGQLTTDDAENNTAVDLFKTTKSTAGTAEAKAIAGAI 269 Query: 206 VGQTISLDLSQSMSAAKIGG--GLVQKGQTVGTVTGLSLDNNGAYTGSGATIT---AINV 260 G I G G+ T+ G + A +GA + Sbjct: 270 KGGKEGDTFDYKGVTFTIDTKTGNDGNGKVSTTINGEKVTLTVADITAGAANVDAATLQS 329 Query: 261 LSDGKGGYTFTDQNGGAISQTVAQSVFGANATTGTGTAVGNLTLQSGATGAGTSAAQQTA 320 + ++ + + A + T A Sbjct: 330 SKNVYTSVVNGQFTFDDKTKNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLA 389 Query: 321 ITNAINQINAVNKPATVSNLDISTVSGANVAMVSIDNALQTVNNVQAALGAAQNRFTAIA 380 A ++ + + SID+AL V+ V+++LGA QNRF + Sbjct: 390 GKTMFIDKTASGVSTLINEDAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAI 449 Query: 381 TSQQAESTDLSSAQSQITDANFAQETANMSKNQVLQQAGISVLAQANSLPQQVLKLLQ 438 T+ T+L+SA+S+I DA++A E +NMSK Q+LQQAG SVLAQAN +PQ VL LL+ Sbjct: 450 TNLGNTVTNLNSARSRIEDADYATEVSNMSKAQILQQAGTSVLAQANQVPQNVLSLLR 507
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 45.7 bits (108), Expect = 8e-09 Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 8/95 (8%) Query: 47 YLDKLEARAEFVAEAVDGICHGFVAFYC--NDYATRILYVTLILVAPTRRRTRLGERLLT 104 Y+++ E +A F+ + C G + N YA + I VA R+ +G LL Sbjct: 59 YVEE-EGKAAFLYYL-ENNCIGRIKIRSNWNGYA----LIEDIAVAKDYRKKGVGTALLH 112 Query: 105 RTFELARARGFLRCRLEVHPDNPGARDFYARLGFK 139 + E A+ F LE N A FYA+ F Sbjct: 113 KAIEWAKENHFCGLMLETQDINISACHFYAKHHFI 147
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 51.1 bits (122), Expect = 1e-09 Identities = 21/110 (19%), Positives = 40/110 (36%) Query: 214 QTIALCPDHPEAHYNLGVALQNLDRLSEAEAAYRDAIRCRPGLPQPHNNLGCVLRAQGRH 273 + D E Y+L + +A ++ + LG +A G++ Sbjct: 27 MLNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQY 86 Query: 274 DEAAVAFTDALALAPRMAEVHYNLGTTLAHAGQLDEAERAYRRALDLRAD 323 D A +++ + + ++ L G+L EAE A +L AD Sbjct: 87 DLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELIAD 136 Score = 41.5 bits (97), Expect = 3e-06 Identities = 15/90 (16%), Positives = 29/90 (32%) Query: 135 GRLDEAEQAFGQALSIEPRSPDVLTDLGNLLRILARPAEAELAYRLAIAVRADHVLAHAN 194 G+ ++A + F ++ LG + + + A +Y + + Sbjct: 50 GKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIKEPRFPFH 109 Query: 195 LGAILVDMQRLPEAEAASRQTIALCPDHPE 224 L+ L EAE+ L D E Sbjct: 110 AAECLLQKGELAEAESGLFLAQELIADKTE 139 Score = 38.8 bits (90), Expect = 2e-05 Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 3/92 (3%) Query: 98 SQERLPEAEVILRRQLACVA-PLRASHHHRFGKVLEALGRLDEAEQAFGQALSIEPRSPD 156 + +A + Q CV + G +A+G+ D A ++ ++ + P Sbjct: 48 QSGKYEDAHKVF--QALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIKEPR 105 Query: 157 VLTDLGNLLRILARPAEAELAYRLAIAVRADH 188 L AEAE LA + AD Sbjct: 106 FPFHAAECLLQKGELAEAESGLFLAQELIADK 137 Score = 34.5 bits (79), Expect = 5e-04 Identities = 13/78 (16%), Positives = 24/78 (30%) Query: 173 EAELAYRLAIAVRADHVLAHANLGAILVDMQRLPEAEAASRQTIALCPDHPEAHYNLGVA 232 +A ++ + LGA M + A + + P ++ Sbjct: 54 DAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIKEPRFPFHAAEC 113 Query: 233 LQNLDRLSEAEAAYRDAI 250 L L+EAE+ A Sbjct: 114 LLQKGELAEAESGLFLAQ 131 Score = 34.1 bits (78), Expect = 7e-04 Identities = 17/74 (22%), Positives = 25/74 (33%) Query: 270 QGRHDEAAVAFTDALALAPRMAEVHYNLGTTLAHAGQLDEAERAYRRALDLRADYDDARF 329 G++++A F L + LG GQ D A +Y + F Sbjct: 49 SGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIKEPRFPF 108 Query: 330 GLATLLLGRGRFEE 343 A LL +G E Sbjct: 109 HAAECLLQKGELAE 122 Score = 29.9 bits (67), Expect = 0.021 Identities = 14/86 (16%), Positives = 23/86 (26%) Query: 202 MQRLPEAEAASRQTIALCPDHPEAHYNLGVALQNLDRLSEAEAAYRDAIRCRPGLPQPHN 261 + +A + L LG Q + + A +Y P+ Sbjct: 49 SGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIKEPRFPF 108 Query: 262 NLGCVLRAQGRHDEAAVAFTDALALA 287 + L +G EA A L Sbjct: 109 HAAECLLQKGELAEAESGLFLAQELI 134
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 31.8 bits (72), Expect = 6e-04 Identities = 29/130 (22%), Positives = 45/130 (34%), Gaps = 17/130 (13%) Query: 7 PEPFDHLADALERELLNMSDEDVLEGRNGDAAKANGLRLLKAAKATAGKQRLAAAKEAVA 66 +PF L + + S L GR+G ANG R L + A LA + Sbjct: 94 TQPFQLLETSPQFIYQAQSG---LTGRDGPDNPANGPRPLYNVEKDAYV--LAEGQNE-- 146 Query: 67 LARSGVLSVPLEVKLDDIKAYIRNAS-NDGRYTL-AARSLDEMTESDLR-RIYAQLKRLE 123 L VP+ + + G Y + ++ E L + QLK+ Sbjct: 147 ------LQVPMTYTDAAGNTFTKTFVLKRGDYAVNVNYNVQNAGEKPLEISSFGQLKQ-S 199 Query: 124 SSLDSNEDDG 133 +L + D G Sbjct: 200 ITLPPHLDTG 209
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 31.6 bits (71), Expect = 0.010 Identities = 22/146 (15%), Positives = 44/146 (30%), Gaps = 7/146 (4%) Query: 219 EELPTTDAELDSAIADIQNSMVAVKRREQRALSVLRAKHEELEITKVQRGIAQAAVDDIE 278 E + I ++ A+ R+ L + +A +E Sbjct: 200 EGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALE 259 Query: 279 KDYDFASTQLRDDVLVCPLCGTLHDNTLLERASLLQDRAQAEQQVASLTATQSKIEAAIE 338 L + + +L ++A E + A L + A + Sbjct: 260 ARQAELEKALEGAM-------NFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQ 312 Query: 339 TTLRRLDAVREELAKLNRRFKRLDKD 364 + R LDA RE +L ++L++ Sbjct: 313 SLRRDLDASREAKKQLEAEHQKLEEQ 338
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 27.9 bits (62), Expect = 0.012 Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 5/85 (5%) Query: 5 ATIARPYAEALFRVAEGGDIAAWSTLVQELAQVARLPEVLSVASSPKVTRTQVAELLLAA 64 AT + A+A+F+ GGD+ S +Q++ + +P L+V TR + ELL Sbjct: 28 ATTTKSAADAVFQQLGGGDV---SGAMQDIDLIMDIPVKLTVELGR--TRMTIKELLRLT 82 Query: 65 VKSPVAAGAEAKNFVQMLVDNHRIA 89 S VA A + +L++ + IA Sbjct: 83 QGSVVALDGLAGEPLDILINGYLIA 107
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 108 bits (271), Expect = 1e-34 Identities = 45/88 (51%), Positives = 58/88 (65%) Query: 2 NKQELIDAVAAQTGASKAQTGETLDTLLEVIKKAVSKGDAVQLIGFGSFGSGKRAARTGR 61 NKQ+LI VA T +K + +D + + ++KG+ VQLIGFG+F +RAAR GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGR 62 Query: 62 NPKTGETIKIPAAKTVKFTAGKAFKDAV 89 NP+TGE IKI A+K F AGKA KDAV Sbjct: 63 NPQTGEEIKIKASKVPAFKAGKALKDAV 90
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 393 bits (1010), Expect = e-129 Identities = 208/690 (30%), Positives = 330/690 (47%), Gaps = 86/690 (12%) Query: 13 TTLLVAGIIVSQAAYAQVTLNFVNADIDQVAKAIGAATGKTIIVDPRVKGQLNLVAERPV 72 T L+ A ++ AA + + +F DI + + KT+I+DP V+G + + + + Sbjct: 13 TLLIFAALLFRPAAAEEFSASFKGTDIQEFINTVSKNLNKTVIIDPSVRGTITVRSYDML 72 Query: 73 PEDQALKTLQSALRMQGFALV-QDHGVLKVVPEADAKLQGVPTYIGNAPQARGDQVITQV 131 E+Q + S L + GFA++ ++GVLKVV DAK VP AP GD+V+T+V Sbjct: 73 NEEQYYQFFLSVLDVYGFAVINMNNGVLKVVRSKDAKTAAVPVASDAAPGI-GDEVVTRV 131 Query: 132 FELHNESANNLLPVLRPLI--SPNNTVTAYPANNTIVVTDYADNVRRIAQIIAGVDSAAG 189 L N +A +L P+LR L + +V Y +N +++T A ++R+ I+ VD+A Sbjct: 132 VPLTNVAARDLAPLLRQLNDNAGVGSVVHYEPSNVLLMTGRAAVIKRLLTIVERVDNAGD 191 Query: 190 AQVQVVPLRNANAIDLAAQLQKMLDPGAIGNSDATLKVSVTADPRTNALLLRASNASRLA 249 V VPL A+A D+ + ++ + ++ +V AD RTNA+L+ SR Sbjct: 192 RSVVTVPLSWASAADVVKLVTELNKDTSKSALPGSMVANVVADERTNAVLVSGEPNSR-Q 250 Query: 250 AAKRLVQQLDAPSAVPGNMHVVPLRNADAVKLAKTLRGMLGKGGNDSGSSASSNDANSFN 309 +++QLD A GN V+ L+ A A L + L Sbjct: 251 RIIAMIKQLDRQQATQGNTKVIYLKYAKASDLVEVL------------------------ 286 Query: 310 QNGGSSSSGNFSTGTSGTPPLPSGGLGSSSSSSGYGGGSSGGGLGTGGLLGGDKDKSGDD 369 G+ S+ S + D Sbjct: 287 -----------------------TGISSTMQSEKQAAKPVA---------------ALDK 308 Query: 370 NQPGGMIQADSATNSLIITASDPVYRNLRSVIDQLDARRAQVYIEALIVELNSNTSGNLG 429 N +I+A TN+LI+TA+ V +L VI QLD RR QV +EA+I E+ NLG Sbjct: 309 N---IIIKAHGQTNALIVTAAPDVMNDLERVIAQLDIRRPQVLVEAIIAEVQDADGLNLG 365 Query: 430 IQWQVASG--QFLGGTNLNPTGGLGNSIINLTTGGTAATAGLAANLANLNQGLNIGWLHN 487 IQW + + L + + + G ++ LA+ L++ N G+ G Sbjct: 366 IQWANKNAGMTQFTNSGLPISTAIAGANQYNKDGTV--SSSLASALSSFN-GIAAG---- 418 Query: 488 MFGVQGLGALLQYFAGVSDANVLSTPNLITLDNEEAKIVVGQNVPIATGSYSNLTSGTTS 547 F LL + + ++L+TP+++TLDN EA VGQ VP+ TGS + + Sbjct: 419 -FYQGNWAMLLTALSSSTKNDILATPSIVTLDNMEATFNVGQEVPVLTGS----QTTSGD 473 Query: 548 NAFNTYDRRDVGLTLHVKPQITDGGILKLQLYTEDSAV--VAGTTNAQTGPTFTKRSIQS 605 N FNT +R+ VG+ L VKPQI +G + L++ E S+V A +T++ G TF R++ + Sbjct: 474 NIFNTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSTSSDLGATFNTRTVNN 533 Query: 606 TILADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSETKQRAKTNLMVFLRPVI 665 +L +GE +V+GGL+ + + KVPLLGDIP IG LFRS +K+ +K NLM+F+RP + Sbjct: 534 AVLVGSGETVVVGGLLDKSVSDTADKVPLLGDIPVIGALFRSTSKKVSKRNLMLFIRPTV 593 Query: 666 ISDRSTAQAVTANRYDYIQGVTGAYKSDNN 695 I DR + ++ +Y + N Sbjct: 594 IRDRDEYRQASSGQYTAFNDAQSKQRGKEN 623
>TYPE3IMQPROT#Type III secretion system inner membrane Q protein family signature. Length = 86 Score = 65.2 bits (159), Expect = 9e-18 Identities = 28/85 (32%), Positives = 44/85 (51%) Query: 4 EQVMTLAHQAMMVGLLLAAPLLLVALAVGLVVSLFQAATQINEATLSFIPKLLAVAATLV 63 + ++ ++A+ + L+L+ +VA +GL+V LFQ TQ+ E TL F KLL V L Sbjct: 2 DDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLF 61 Query: 64 IAGPWMLTTMLDYLRQTLLHVATLG 88 + W +L Y RQ + G Sbjct: 62 LLSGWYGEVLLSYGRQVIFLALAKG 86
>TYPE3IMRPROT#Type III secretion system inner membrane R protein family signature. Length = 261 Score = 156 bits (396), Expect = 5e-49 Identities = 112/256 (43%), Positives = 165/256 (64%), Gaps = 1/256 (0%) Query: 1 MFSVTYAQLNGWLTAFLWPFVRMLALVATAPMVGHAAVPVRVKIGVAAFMALVVAPTLGA 60 M VT Q WL + WP +R+LAL++TAP++ +VP RVK+G+A + +AP+L A Sbjct: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 Query: 61 MPDVTVFSAQGIWILVNQFLIGVAMGFTMQLVFAAVEAAGDFIGLSMGLGFATFFDPHSS 120 DV VFS +W+ V Q LIG+A+GFTMQ FAAV AG+ IGL MGL FATF DP S Sbjct: 61 -NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 Query: 121 GATPAMGRFLNAVAMLAFLAVDGHLQVFAALAASFQSLPVSADLLHAPGWRTLAAFGATV 180 P + R ++ +A+L FL +GHL + + L +F +LP+ + L++ + L G+ + Sbjct: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 Query: 181 FEMGLLLSLPVVVALLIANLALGILNRAAPQIGMYQIGFPVTLIVGLLLVQLMIPNLVPF 240 F GL+L+LP++ LL NLALG+LNR APQ+ ++ IGFP+TL VG+ L+ ++P + PF Sbjct: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 Query: 241 VSHLFDMGLDAMGRVL 256 HLF + + ++ Sbjct: 240 CEHLFSEIFNLLADII 255
>PF06580#Sensor histidine kinase Length = 349 Score = 55.6 bits (134), Expect = 1e-10 Identities = 24/128 (18%), Positives = 46/128 (35%), Gaps = 26/128 (20%) Query: 338 LGERLDV--AGSDSLLTALV-----MNLVDNAVRY----TQPGGCVTVCARRDGDAIVLD 386 +RL + +++ V LV+N +++ GG + + +D + L+ Sbjct: 236 FEDRLQFENQINPAIMDVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLE 295 Query: 387 VVDDGPGIPAEARPHVFKRFYRVSADTEGSGLGLAIVRE-IALAHGGSASLAPGPGNRGV 445 V + G + E +G GL VRE + + +G A + V Sbjct: 296 VENTGSLALKNTK--------------ESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKV 341 Query: 446 VVTVRLPA 453 V +P Sbjct: 342 NAMVLIPG 349
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 94.9 bits (236), Expect = 8e-25 Identities = 28/126 (22%), Positives = 58/126 (46%), Gaps = 1/126 (0%) Query: 2 KLLLVEDNAELAHWIVNLLRGEDFAVDCVGDGERADTVLKTERYDAVLLDMRLPGISGKE 61 +L+ +D+A + + L + V + + D V+ D+ +P + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 VLARLRRRNDNVPVLMLTAHGSVDDKVDCFGAGADDYVVKPFESRELVARI-RALIRRQA 120 +L R+++ ++PVL+++A + + GA DY+ KPF+ EL+ I RAL + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 121 GVGTTQ 126 + Sbjct: 125 RPSKLE 130
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 62.5 bits (152), Expect = 6e-13 Identities = 56/250 (22%), Positives = 96/250 (38%), Gaps = 39/250 (15%) Query: 61 LKRKTLALSIAAAGLCAGHAHAQSSVQLYGLMDLSFPTYRTHADANGKHVIGMGNEGEPW 120 +K+ +AL++AA A + V LYG + T R+ A NG + Sbjct: 1 MKKSLIALTLAAL-----PVAAMADVTLYGTIKAGVETSRSVAH-NGAQAASVETGTGIV 54 Query: 121 FSGSRWGLRGAEDIGGGTKIIFRLESEFVVANGQMEDEGQIFDRDAWVGVEDERFGKLTA 180 GS+ G +G ED+G G K I+++E + +A + +R +++G++ FGKL Sbjct: 55 DLGSKIGFKGQEDLGNGLKAIWQVEQKASIAGT----DSGWGNRQSFIGLKGG-FGKLRV 109 Query: 181 GFQNTIARDAATIYGDAYGSARLSTEEGG--WTNSNNFKQMIFYAAGPTGTRYNNGVAWK 238 G N++ +D I + + S S G RY++ Sbjct: 110 GRLNSVLKDTGDI--NPWDSK--SDYLGVNKIAEPEAR---------LISVRYDSPE--- 153 Query: 239 KLFSNGIFASAGYQFSNSTSFATGSAYQAALGYNGGPFNVSGFYNHVNH-------NGFR 291 F+ G+ S Y +++ +Y A Y G F V + H N + Sbjct: 154 --FA-GLSGSVQYALNDNAGRHNSESYHAGFNYKNGGFFVQYGGAYKRHHQVQENVNIEK 210 Query: 292 NQTFSVGGNY 301 Q + Y Sbjct: 211 YQIHRLVSGY 220
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 139 bits (350), Expect = 3e-42 Identities = 81/253 (32%), Positives = 129/253 (50%), Gaps = 6/253 (2%) Query: 5 LAGKVAMVTGAGRGIGAAIARAFVREGAAVALVDLDFPQAQHTAAAIAHECDGARVLPLQ 64 + GK+A +TGA +GIG A+AR +GA +A VD + + + +++ E A P Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPA- 64 Query: 65 ADVAQQQAVREALARTEATFGPLDVLVNNAGINVFADPLTMTDDDWRRCFAVDLDGVWHG 124 DV A+ E AR E GP+D+LVN AG+ +++D++W F+V+ GV++ Sbjct: 65 -DVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 125 CRAALEGMLERGRGSIVNIASTHAFRIIPGCFPYPVAKHGVLGLTRALGIEYAARNVRVN 184 R+ + M++R GSIV + S A Y +K + T+ LG+E A N+R N Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCN 183 Query: 185 AIAPGYIETQLTRDWW---DAQPDPAAARAETLALQ-PMKRIGKPEEVAMTAVFLASDEA 240 ++PG ET + W + ET P+K++ KP ++A +FL S +A Sbjct: 184 IVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQA 243 Query: 241 PFINATCITVDGG 253 I + VDGG Sbjct: 244 GHITMHNLCVDGG 256
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.3 bits (65), Expect = 0.041 Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 5/38 (13%) Query: 18 RALD-GISFDVHAGEVHGLMGENGAGKSTLLKILGGEY 54 R ++ G FD L G G GKSTL+ L G Sbjct: 587 RVMEPGCKFDY----SVVLEGTGGIGKSTLINTLVGLD 620
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 116 bits (292), Expect = 1e-33 Identities = 72/251 (28%), Positives = 108/251 (43%), Gaps = 8/251 (3%) Query: 27 LEDRAVLITGGATGIGASFVEHFAEQGARVAFVDLDAAAGAALAERLAHVRHAPLFLSCD 86 +E + ITG A GIG + A QGA +A VD + + L D Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 87 LTDIDALRHAIDAIRARIGAIAVLVNNAANDARHAIGDVTPASFDAGIAVNLRHQFFAAQ 146 + D A+ I +G I +LVN A I ++ ++A +VN F A++ Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 147 AVIDDMKRQGGGAIINLGSISWMLKNGGYPVYVMAKAAVQGLTRGLARDLGPFGIRVNSL 206 +V M + G+I+ +GS + Y +KAA T+ L +L + IR N + Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 207 VPGWVMTDKQRRLWLDDAGRAAI--------KAGQCLDAELLPADLARMALFLAADDSRM 258 PG TD Q LW D+ G + K G L P+D+A LFL + + Sbjct: 186 SPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGH 245 Query: 259 ITAQDVIVDGG 269 IT ++ VDGG Sbjct: 246 ITMHNLCVDGG 256
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 29.5 bits (66), Expect = 0.014 Identities = 23/102 (22%), Positives = 33/102 (32%), Gaps = 13/102 (12%) Query: 236 PPAWQFGVAYPLPATLVNHAFTGWGGHATVSWPRRRLLLTVAADADAYVLYTPPGEDFFC 295 P WQF V A GW G+ + R+ + + L Sbjct: 68 PDRWQFLVLEARDGADPAPADDGWSGYRWLPLRAGRVATSGSIAGGKLNLA---FAQGEA 124 Query: 296 FEPVDHPINAVNLPGG---------AAAHGMTLLAPGERLTR 328 + P D+P + + PGG A G+ A GE L Sbjct: 125 WTPGDNP-DVLIFPGGEMTPFRLTLGEAPGIAFNARGESLPE 165
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 32.9 bits (75), Expect = 0.002 Identities = 52/265 (19%), Positives = 89/265 (33%), Gaps = 38/265 (14%) Query: 70 FMRPLGAIVLGAYADRAGRKAALTLSILLMMAGTLIIAVLPTYGTIGVAAPVILVAARLM 129 M+ A VLGA +DR GR+ L +S+ I+A P +L R++ Sbjct: 54 LMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLW--------VLYIGRIV 105 Query: 130 QGFSAGGEFGSATAFLAEHVPGR-RGFFASWQVASQGLTTLLAAGFGTVLNAQLTADQMA 188 G + G A A++A+ G R + A G + G + M Sbjct: 106 AGIT-GATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGL---------MG 155 Query: 189 SWGWRVPFFFGLLLGPVAYYI-------RTKVDETPEFLAAEGTANPLR--DTFASHKAR 239 + PFF L + + K + P A R A Sbjct: 156 GFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAAL 215 Query: 240 LVAAMGVVVLGTV-ATYLVLFMPTYGVKQLGLAPSAAFAAILVVGVIQ-----MAFAPLV 293 + + ++G V A V+F G + + ++ G++ M P+ Sbjct: 216 MAVFFIMQLVGQVPAALWVIF----GEDRFHWDATTIGISLAAFGILHSLAQAMITGPVA 271 Query: 294 GHWSDRYGRVRVMIAPAVGILVLIY 318 +R + MIA G ++L + Sbjct: 272 ARLGERRALMLGMIADGTGYILLAF 296 Score = 29.4 bits (66), Expect = 0.031 Identities = 32/185 (17%), Positives = 68/185 (36%), Gaps = 22/185 (11%) Query: 240 LVAAMGVVVLGTVATYLVL-FMPTYGVKQLGLAPSAAFAAILVV---GVIQMAFAPLVGH 295 L+ + V L V L++ +P ++ L + +++ ++Q A AP++G Sbjct: 7 LIVILSTVALDAVGIGLIMPVLPGL-LRDLVHSNDVTAHYGILLALYALMQFACAPVLGA 65 Query: 296 WSDRYGRVRVMIAPAVGILVLIYPAFAYLVAHPGFGTLIALQVLLAFLMTGYFAALPGLL 355 SDR+GR V++ G V ++A F ++ + ++A + A + Sbjct: 66 LSDRFGRRPVLLVSLAGAAV-----DYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYI 120 Query: 356 SEVFPVQTRTTG---MSLAYNVAVTIFGGFGPFIIAWLIRETGMKTAPSFYLMFAAVLSL 412 +++ R MS + + G + +P AA L+ Sbjct: 121 ADITDGDERARHFGFMSACFGFGMVAGPVLGGLM---------GGFSPHAPFFAAAALNG 171 Query: 413 AALVV 417 + Sbjct: 172 LNFLT 176
>SECFTRNLCASE#Bacterial translocase SecF protein signature. Length = 333 Score = 321 bits (823), Expect = e-111 Identities = 96/320 (30%), Positives = 170/320 (53%), Gaps = 17/320 (5%) Query: 1 MEFFRIRKDIPFMRHALVFNVISLVTFLAAVFFLFHRGLHLSVEFTGGTVIEVQYQQAAE 60 ++ + + F R ++V +A+V GL+ ++F GGT I + A + Sbjct: 5 LKLVPEKTNFDFFRWQWATFGAAIVMMIASVILPLVIGLNFGIDFKGGTTIRTESTTAID 64 Query: 61 LEPVRATLGKLGYADAQVQNFGTSR------NVLIRLQLKEGLTSAQQ--------SDQV 106 + RA L L D + +IR+Q++E A+ ++V Sbjct: 65 VGVYRAALEPLELGDVIISEVRDPSFREDQHVAMIRIQMQEDGQGAEGQGAQGQELVNKV 124 Query: 107 MGALKAQSPDVTLQRVEFVGPQVGRELATDGLLALACVVIGIVIYLSFRFEWKYAVAGII 166 AL A P + + E VGP+V EL + +L + I+ Y+ RFEW++A+ ++ Sbjct: 125 ETALTAVDPALKITSFESVGPKVSGELVWTAVWSLLAATVVIMFYIWVRFEWQFALGAVV 184 Query: 167 ANLHDVVIILGFFAFFQWEFSLAVLAAILAVLGYSVNESVVIFDRIRETFRRERKMSVQE 226 A +HDV++ +G FA Q +F L +AA+L + GYS+N++VV+FDR+RE + + M +++ Sbjct: 185 ALVHDVLLTVGLFAVLQLKFDLTTVAALLTITGYSINDTVVVFDRLRENLIKYKTMPLRD 244 Query: 227 VINHAITTTMSRTIITHTSTEMMVLSMFFFGGPTLHYFALALTVGIMFGIYSSVFVAGSL 286 V+N ++ T+SRT++T +T + ++ M +GG + F A+ G+ G YSSV+VA ++ Sbjct: 245 VMNLSVNETLSRTVMTGMTTLLALVPMLIWGGDVIRGFVFAMVWGVFTGTYSSVYVAKNI 304 Query: 287 AMWLGIKREDLVKEKKTAHD 306 +++G+ R KEKK D Sbjct: 305 VLFIGLDRN---KEKKDPSD 321
>SECFTRNLCASE#Bacterial translocase SecF protein signature. Length = 333 Score = 79.5 bits (196), Expect = 4e-18 Identities = 48/237 (20%), Positives = 101/237 (42%), Gaps = 7/237 (2%) Query: 382 KGKGEVLTVATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLG 441 + V + E G + G + + L A A + E ++GP + Sbjct: 91 REDQHVAMIRIQMQEDGQGAEGQGAQGQELVNKVETALTAVDPALKITSFE--SVGPKVS 148 Query: 442 ADNIKMGVHSVIWGFCAIAVFM-IAYYMLFGVVSVIGLSVNLLLLVAVLSLMQATLTLPG 500 + + V S++ I ++ + + F + +V+ L ++LL V + +++Q L Sbjct: 149 GELVWTAVWSLLAATVVIMFYIWVRFEWQFALGAVVALVHDVLLTVGLFAVLQLKFDLTT 208 Query: 501 IAAIALALGMAIDSNVLINERVREELRAGQPPQLAIQAGYAHAWA---TILDSNVTTLIA 557 +AA+ G +I+ V++ +R+RE L + L + T++ +TTL+A Sbjct: 209 VAALLTITGYSINDTVVVFDRLRENLIKYKTMPLRDVMNLSVNETLSRTVMTG-MTTLLA 267 Query: 558 GLALLAFGSGPVRAFAIVHCLGILTSMFSAVFFSRGLVNLWYGGRKKLKSLAIGQVW 614 + +L +G +R F G+ T +S+V+ ++ +V R K K + + Sbjct: 268 LVPMLIWGGDVIRGFVFAMVWGVFTGTYSSVYVAKNIVLFIGLDRNKEKKDPSDKFF 324
>SECA#SecA protein signature. Length = 901 Score = 35.6 bits (82), Expect = 8e-04 Identities = 29/100 (29%), Positives = 40/100 (40%), Gaps = 6/100 (6%) Query: 346 AQARVVDEIAHDLTLAHPMQRLLQGDV-----GSGKTVVAALAATQAIDAGYQAALMAPT 400 A RV D+ L M L + + G GKT+ A L A G ++ Sbjct: 74 ASKRVFGMRHFDVQLLGGM-VLNERCIAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVN 132 Query: 401 EILAEQHARKLRAWLEPLGVTVAWLAGSLKAKEKRAAIEA 440 + LA++ A R E LG+TV + A KR A A Sbjct: 133 DYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAYAA 172
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 109 bits (274), Expect = 1e-29 Identities = 76/337 (22%), Positives = 128/337 (37%), Gaps = 35/337 (10%) Query: 5 VVTGANGFVGRAVCRCALDAGHTVTAL-------------VRRPGGCIDGVREWVHDAAD 51 +VTGA GF+G V + L+AGH V + R G + D AD Sbjct: 4 LVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDLAD 63 Query: 52 FAGLDEAWPTDLTADCMIHLAARVHVMRDESPDPDAAFDATNVAGTLRLADAARHHGVRR 111 G+ + + + + R+ V R +P A D +N+ G L + + RH+ ++ Sbjct: 64 REGMTDLF-ASGHFERVFISPHRLAV-RYSLENPHAYAD-SNLTGFLNILEGCRHNKIQH 120 Query: 112 IVFASSIKAVGEGDGGVPLSETFE-PHPQDAYGRSKLRAERQLAQFGASVGLDVVVVRPP 170 +++ASS +V + +P S HP Y +K E + GL +R Sbjct: 121 LLYASS-SSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFF 179 Query: 171 LVYGPAVRAN--FLRMMDAVARGMPLPL-GAVSARRSIIYVDNLADALLRCAIDPRAAGE 227 VYGP R + + A+ G + + +R Y+D++A+A++R A Sbjct: 180 TVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPHADT 239 Query: 228 CFHVADDDAPTVAGLLRLVGDALGKPARLIAVPPALLRVLGKLTGRSAAIDRLTGSLQL- 286 + V R+ P L ++ L G A + LQ Sbjct: 240 QWTVETGTPAASIAPYRVYNIGNSSPVEL----MDYIQALEDALGIEA--KKNMLPLQPG 293 Query: 287 -------DTGRIRRVLDWQPPYTTRQGLEATAAWYRS 316 DT + V+ + P T + G++ WYR Sbjct: 294 DVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRD 330
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 71.4 bits (175), Expect = 2e-15 Identities = 54/298 (18%), Positives = 108/298 (36%), Gaps = 44/298 (14%) Query: 285 VMVTGAGGSIGSELCRQILRFAPAQLVAFD-LSEYAMYRLTEELRERFPDLPVVPIIGDA 343 +VTGA G IG + +++L A Q+V D L++Y L + E D Sbjct: 3 YLVTGAAGFIGFHVSKRLLE-AGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 344 KDSLLLDQVMSRHAPHIVFHAAAYKHVPLMEEHNAWQALRNNVLGTYRVARAAIRHDVRH 403 D + + + VF + V E N +N+ G + + ++H Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLE-NPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 404 FVLIST---------------DKAVNPTNVMGASKRLAEMACQALQQSSGRTQFETVRFG 448 + S+ D +P ++ A+K+ E+ G +RF Sbjct: 121 LLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYG-LPATGLRFF 179 Query: 449 NVLGSAGS---VIPKFQQQIAKGGPVTV-THPEITRFFMTIPEASQLVLQAS-------- 496 V G G + KF + + +G + V + ++ R F I + ++ +++ Sbjct: 180 TVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPHADT 239 Query: 497 --SMGHGG--------EIFILDMGEPVKIVDLACDLIRLYGFSEEQIRIEFTGLRPGE 544 ++ G ++ + PV+++D L G + + L+PG+ Sbjct: 240 QWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGI---EAKKNMLPLQPGD 294
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 29.1 bits (65), Expect = 0.033 Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 3/50 (6%) Query: 164 LASMVSFMMFASLAYVAFHVNDPVVMSASII-MMGAVLGFFLWNFPAGLI 212 L ++ MF V DP M I+ M + F FP+GL+ Sbjct: 467 LPILMGVTMFFIQKMSPTTVTDP--MQQKIMTFMPVIFTVFFLWFPSGLV 514
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 166 bits (422), Expect = 6e-51 Identities = 81/353 (22%), Positives = 149/353 (42%), Gaps = 54/353 (15%) Query: 6 TILVTGGAGYIGSHTAVELLDNGYDVVIVDNLVNSKAESVR--RIERITGKTPAFHQVDV 63 LVTG AG+IG H + LL+ G+ VV +DNL + S++ R+E + FH++D+ Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 64 CDEAALAKVFDAHPITGTIHFAALKAVGESVAKPLEYYQNNIGGLLAVLKVMRERNVRQF 123 D + +F + AV S+ P Y +N+ G L +L+ R ++ Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 124 VFSSSATVYGVPERSPIDES----FPLSATNPYGQSKLIAEQI------LRDLEVSDPSW 173 +++SS++VYG+ + P P+S Y +K E + L L Sbjct: 122 LYASSSSVYGLNRKMPFSTDDSVDHPVS---LYAATKKANELMAHTYSHLYGL------- 171 Query: 174 RIATLRYFNPVGAHASGLIGEDPAGIPNNLMPYVAQVAVGKLEKLRVFGSDYPTPDGTGV 233 LR+F G P G P ++ + A+ + + + V+ G Sbjct: 172 PATGLRFFTVYG----------PWGRP-DMALFKFTKAMLEGKSIDVYN------YGKMK 214 Query: 234 RDYIHVVDLAKGHIAALDALAKRDASF---------------VVNLGTGQGYSVLEVVRA 278 RD+ ++ D+A+ I D + D + V N+G +++ ++A Sbjct: 215 RDFTYIDDIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQA 274 Query: 279 FEKASGRPVPYELVARRPGDIAECYANPQAAVDIIGWRATLGIEEMCADHWRW 331 E A G ++ +PGD+ E A+ +A ++IG+ +++ + W Sbjct: 275 LEDALGIEAKKNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNW 327
>STREPTOPAIN#Streptopain (C10) cysteine protease family signature. Length = 398 Score = 26.6 bits (58), Expect = 0.032 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 10/63 (15%) Query: 53 PLAAAAGSTQVGDAVSETFLYPAAHRLLRRCDAVLRIDGASRGADADVALARELG--KPV 110 P + +AGS++V A+ E F Y + + R D D + + +EL +PV Sbjct: 278 PSSGSAGSSRVQRALKENFGYNQSVHQINRGDF--------SKQDWEAQIDKELSQNQPV 329 Query: 111 YFA 113 Y+ Sbjct: 330 YYQ 332
>SUBTILISIN#Subtilisin serine protease family (S8) signature. Length = 326 Score = 51.4 bits (123), Expect = 2e-09 Identities = 23/105 (21%), Positives = 43/105 (40%), Gaps = 13/105 (12%) Query: 147 VHAIAPKAKI----VLVEAASASFSDLLAAVDVAVKRGASVVSMSFGGNEFSS--ETGFD 200 V +AP+A + VL + S + ++ + A+++ ++SMS GG E Sbjct: 103 VVGVAPEADLLIIKVLNKQGSGQYDWIIQGIYYAIEQKVDIISMSLGGPEDVPELHEAVK 162 Query: 201 GHFNVPGVTFVASSGDSGTGTE------YPAASRYVVSVGGTTLS 239 + + ++G+ G G + YP V+SVG Sbjct: 163 KAVA-SQILVMCAAGNEGDGDDRTDELGYPGCYNEVISVGAINFD 206
>PF05932#Tir chaperone protein (CesT) Length = 127 Score = 28.6 bits (64), Expect = 0.015 Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 1/65 (1%) Query: 151 LHATLL-RLAAALGCHPLSIPAGGRMLYHAAAHYAASFALCGLSEAVELWRGLGFDEDAA 209 + TLL + +L PL G +A + + E + L L +D Sbjct: 5 FYKTLLDDFSRSLEMQPLVFDDHGTCNMIIDNTFALTLSCDYARERLLLIGLLEPHKDIP 64 Query: 210 LRALL 214 + LL Sbjct: 65 QQCLL 69
>PERTACTIN#Pertactin signature. Length = 922 Score = 28.9 bits (64), Expect = 0.005 Identities = 22/70 (31%), Positives = 26/70 (37%) Query: 59 PVAPAYPVYAPPPPVYYAPPPPPVYYAPAPAYYAPPPAVVVGGATTVVRTGAMVMAAGAI 118 P P P PP PP PP APA P + A V TG + +A+ Sbjct: 579 PQPGPQPPQPPQPPQPPQPPQPPQRQPEAPAPQPPAGRELSAAANAAVNTGGVGLASTLW 638 Query: 119 TATGVADSSR 128 A A S R Sbjct: 639 YAESNALSKR 648
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 762 bits (1970), Expect = 0.0 Identities = 280/1102 (25%), Positives = 502/1102 (45%), Gaps = 95/1102 (8%) Query: 3 LSRPFITRPVATTLLALGVALAGLFAFIKLPVSPLPQVDFPTISVQASLPGASPETVATS 62 ++ FI RP+ +LA+ + +AG A ++LPV+ P + P +SV A+ PGA +TV + Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 63 VTSPLERHLGSIADVSEMTSTST-VGNARIILQFGLNRDIDGAARDVQAAVNAARADLPA 121 VT +E+++ I ++ M+STS G+ I L F D D A VQ + A LP Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 122 ALKSNPTYRKVNPADSPIMVVSLTSETA--SPAKVYDAASTVLQQSLSQIDGIGQVTVSG 179 ++ + S +MV S+ + + D ++ ++ +LS+++G+G V + G Sbjct: 121 EVQ-QQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG 179 Query: 180 SANPAVRVELEPQSLFHYGIGLEDVRAALASANANAPKGAIEFGP----QRFQ--LYTND 233 + A+R+ L+ L Y + DV L N G + P Q+ + Sbjct: 180 AQY-AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQT 238 Query: 234 QASQASQYRDLVV-AYRNGSAVRLSDLSDVVDSVEDLRNLGLSNGKRAVLVILYRSPGAN 292 + ++ + + +GS VRL D++ V E+ + NGK A + + + GAN Sbjct: 239 RFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGAN 298 Query: 293 IIETIDRVRAALPQLTASLPADITVTPVLDRSTTIRASLRDTEHTLLIAVSLVVMVVFLF 352 ++T ++A L +L P + V D + ++ S+ + TL A+ LV +V++LF Sbjct: 299 ALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLF 358 Query: 353 LRNWRATLIPSVAVPISIVGTFGAMYLLGFSIDNLSLMALIVATGFVVDDAIVVLENISR 412 L+N RATLIP++AVP+ ++GTF + G+SI+ L++ +++A G +VDDAIVV+EN+ R Sbjct: 359 LQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER 418 Query: 413 HI-ENGKPRMQAAFDGAREVGFTVLSMSISLVAVFLPILLMGGIVGRLFREFALTLSLAI 471 + E+ P +A ++ ++ +++ L AVF+P+ GG G ++R+F++T+ A+ Sbjct: 419 VMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAM 478 Query: 472 AVSLAVSLTVTPMMCARLLPEQHDPQSE--GRFGRFLERGFARMQRGYERSLSWALRRPL 529 A+S+ V+L +TP +CA LL E G F + F Y S+ L Sbjct: 479 ALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTG 538 Query: 530 LILLTLFATIGLNVYLYIVVPKGFFPQQDTGLMIGGIQADQSTSFQAMKLKFSEMMRIVQ 589 LL + V L++ +P F P++D G+ + IQ + + + ++ Sbjct: 539 RYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYL 598 Query: 590 GN--PNVKSVAGFTG----GTQTNSGFMFVTLKDRTER---KLSADQVIQQLRPRLADVA 640 N NV+SV G G N+G FV+LK ER + SA+ VI + + L + Sbjct: 599 KNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIR 658 Query: 641 GARTFLQAAQDIRVGGRQSNAQYQFT-LLGDSSAGLYKWGP-ILTEALQKRPELTDVNSD 698 I G + ++ G L + +L A Q L V + Sbjct: 659 DGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPN 718 Query: 699 QQQGGLEAMVTIDRATAARFGIKPAQIDNTLYDAFGQRQVSTIYNPLNQYHVVMEVAPKY 758 + + + +D+ A G+ + I+ T+ A G V+ + + ++ K+ Sbjct: 719 GLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKF 778 Query: 759 WQSPEMLNQVWISTSGGSANGSQTTNAAAGTFVATSAGTSSAGTAAQSAAAIASDSARNQ 818 PE ++++++ + A G V S A + Sbjct: 779 RMLPEDVDKLYVRS-------------ANGEMVPFS--------------AFTTSHWVYG 811 Query: 819 ALNSIAASGKSSASSGASVSTSKSTMIPLSAIATFGPSTTPLSVNHQGLFVATTISFNLP 878 + +G S + S+ ++ + ++ LP Sbjct: 812 SPRLERYNGLPSMEIQGEAAPGTSSGDAMALME--------------------NLASKLP 851 Query: 879 PGVSLSQATQIIYQTMAQIGVPPTIVGSFQGTAQAFQQSMNDQPILILAALLAVYIVLGI 938 G+ + G + + S N P L+ + + V++ L Sbjct: 852 AGIGY----------------------DWTGMSYQERLSGNQAPALVAISFVVVFLCLAA 889 Query: 939 LYESYIHPITILSTLPSAGVGALLALLLFKTEFSIIALIGVILLIGIVKKNAIMMVDFAI 998 LYES+ P++++ +P VG LLA LF + + ++G++ IG+ KNAI++V+FA Sbjct: 890 LYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAK 949 Query: 999 DQTRNHGKSSFDAIHEACLLRFRPIMMTTMAALLGALPLAFGNGDGAELRAPLGIAIAGG 1058 D GK +A A +R RPI+MT++A +LG LPLA NG G+ + +GI + GG Sbjct: 950 DLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGG 1009 Query: 1059 LVMSQVLTLYTTPVVYLYMDRF 1080 +V + +L ++ PV ++ + R Sbjct: 1010 MVSATLLAIFFVPVFFVVIRRC 1031 Score = 100 bits (250), Expect = 2e-23 Identities = 84/507 (16%), Positives = 170/507 (33%), Gaps = 33/507 (6%) Query: 2 NLSRPFITRPVATTLLALGVALAGLFAFIKLPVSPLPQVDFPTISVQASLP-GASPETVA 60 N + L+ + + F++LP S LP+ D LP GA+ E Sbjct: 528 NSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQ 587 Query: 61 TSVTSPLERHLGSIAD-------VSEMTSTSTVGNARIIL-QFGLNRDIDGAARDVQAAV 112 + + +L + V+ + + NA + + +G +A + Sbjct: 588 KVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVI 647 Query: 113 NAARADLPAALKSNPTYRKVNPADSPIMVVSLTSET-----ASPAKVYDAASTVLQQSLS 167 + A+ +L + E + A + +L + Sbjct: 648 HRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQ 707 Query: 168 QIDGIGQVTVSGSAN-PAVRVELEPQSLFHYGIGLEDVRAALASANANAPKGAIEFGPQR 226 + V +G + ++E++ + G+ L D+ +++A + Sbjct: 708 HPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRV 767 Query: 227 FQLYT---NDQASQASQYRDLVVAYRNGSAVRLSDLSDVVDSVEDLRNLGLSNGKRAVLV 283 +LY L V NG V S + V L NG ++ + Sbjct: 768 KKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHW-VYGSPRLERYNGLPSMEI 826 Query: 284 ILYRSPGANIIETIDRVRAALPQLTASLPADITVTPVLDRSTTIRASLRDTEHTLLIAVS 343 +PG + + A + L + LPA I T + R + + V+ Sbjct: 827 QGEAAPGTSSGD----AMALMENLASKLPAGIGYD-----WTGMSYQERLSGNQAPALVA 877 Query: 344 LVVMVVFLFL----RNWRATLIPSVAVPISIVGTFGAMYLLGFSIDNLSLMALIVATGFV 399 + +VVFL L +W + + VP+ IVG A L D ++ L+ G Sbjct: 878 ISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLS 937 Query: 400 VDDAIVVLENI-SRHIENGKPRMQAAFDGAREVGFTVLSMSISLVAVFLPILLMGGIVGR 458 +AI+++E + GK ++A R +L S++ + LP+ + G Sbjct: 938 AKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSG 997 Query: 459 LFREFALTLSLAIAVSLAVSLTVTPMM 485 + + + + +++ P+ Sbjct: 998 AQNAVGIGVMGGMVSATLLAIFFVPVF 1024 Score = 61.8 bits (150), Expect = 1e-11 Identities = 27/168 (16%), Positives = 62/168 (36%), Gaps = 1/168 (0%) Query: 924 LILAALLAVYIVLGILYESYIHPITILSTLPSAGVGALLALLLFKTEFSIIALIGVILLI 983 L A +L +V+ + ++ + +P +G L F + + + G++L I Sbjct: 344 LFEAIMLVF-LVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAI 402 Query: 984 GIVKKNAIMMVDFAIDQTRNHGKSSFDAIHEACLLRFRPIMMTTMAALLGALPLAFGNGD 1043 G++ +AI++V+ +A ++ ++ M +P+AF G Sbjct: 403 GLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGS 462 Query: 1044 GAELRAPLGIAIAGGLVMSQVLTLYTTPVVYLYMDRFRVWAEKRRNRR 1091 + I I + +S ++ L TP + + + Sbjct: 463 TGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGG 510
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 819 bits (2116), Expect = 0.0 Identities = 288/1036 (27%), Positives = 496/1036 (47%), Gaps = 29/1036 (2%) Query: 4 SRLFILRPVGTALLMAAIMLAGLVALRFLPLAALPEVDYPTIQVQTFYPGASPEVMTSSV 63 + FI RP+ +L +M+AG +A+ LP+A P + P + V YPGA + + +V Sbjct: 2 ANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTV 61 Query: 64 TAPLERQFGQMPSLNQMSSQS-SAGASVITLQFSLDLPLDIAEQEVQAAINAAGNLLPSD 122 T +E+ + +L MSS S SAG+ ITL F DIA+ +VQ + A LLP + Sbjct: 62 TQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQE 121 Query: 123 LPAPPIYAKVNPADAPVLTLAVKSKTLPLTQ--VQDLADTRLAMKISQIAGVGLVSLSGG 180 + I + + ++ S TQ + D + + +S++ GVG V L G Sbjct: 122 VQQQGIS-VEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 181 NRPAVRIQANPTALAKYGMNLDDLRTTISNLNVNTPKGNFDGP------TRAYTINANDQ 234 A+RI + L KY + D+ + N G G +I A + Sbjct: 181 QY-AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 235 LTSADQY-NSAVVAYKNGRPVMLTDVATVVAGSENTKLGAWVNSDPAIILNVQRQPGANV 293 + +++ + +G V L DVA V G EN + A +N PA L ++ GAN Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 294 IATVDAIKAQLPKLQETLPAALDVEIVTDRTTMIRAAVRDVQFELLLAVALVVLVMYLFL 353 + T AIKA+L +LQ P + V D T ++ ++ +V L A+ LV LVMYLFL Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 354 ANVYATIIPSLSVPLSLIGTLAVMYMAGFSLNNLSLMALTIATGFVVDDAIVMIENIARY 413 N+ AT+IP+++VP+ L+GT A++ G+S+N L++ + +A G +VDDAIV++EN+ R Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 414 -VEEGESGLEAALKGSRQIGFTIISLTVSLIAVLIPLLFMGDVVGRLFHEFAITLAVTIV 472 +E+ EA K QI ++ + + L AV IP+ F G G ++ +F+IT+ + Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 473 ISAIVSLTLVPMLCAKLLRHSPPPESH---RFEARVHRAIDWVIARYAVALEWVLNRQRS 529 +S +V+L L P LCA LL+ F + D + Y ++ +L Sbjct: 480 LSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539 Query: 530 TLVVALLTLGLTALLYVYVPKGFFPAQDTGVIQAITQAPQSISYGAMAERQQTLAAAILK 589 L++ L + +L++ +P F P +D GV + Q P + + + LK Sbjct: 540 YLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLK 599 Query: 590 D--PNVDSLTSFIGVDGSNITLNSGRMLINLKARDERT---ETAAQIIRDLQQRVSNITG 644 + NV+S+ + G S N+G ++LK +ER +A +I + + I Sbjct: 600 NEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRD 659 Query: 645 ISLFMQPVQDLTIDSTVSPTQYQFMLTS---PNSEEFATWVPKLVARLQQEPS-LADVAT 700 F+ P I + T + F L + +L+ Q P+ L V Sbjct: 660 --GFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRP 717 Query: 701 DLQSNGQSVYIEIDRASAARFGITPATVDNALYDAFGQRIVSTIFTQSNQYRVILESEPK 760 + + +E+D+ A G++ + ++ + A G V+ + ++ ++++ K Sbjct: 718 NGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAK 777 Query: 761 EQHYAQSLNDIYLPSAGGGQVPLTSIASFHERPSPLLVAHLSQFPSTTISFNLAPGASLG 820 + + ++ +Y+ SA G VP ++ + H + + PS I APG S G Sbjct: 778 FRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSG 837 Query: 821 EAVKAIEAAEKDIGLPGSFQTRFQGAALAFQASLSNQLFLILAAIVTMYIVLGVLYESYI 880 +A+ +E LP + G + + S + L+ + V +++ L LYES+ Sbjct: 838 DAMALMENLASK--LPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWS 895 Query: 881 HPITILSTLPSAGVGALLALMITGHDLDIIGIIGIVLLIGIVKKNAIMMIDFALEAERVE 940 P++++ +P VG LLA + D+ ++G++ IG+ KNAI++++FA + E Sbjct: 896 IPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKE 955 Query: 941 GKPPREAIYQACLLRFRPILMTTLAALLGAVPLIVGSGAGSELRQPLGIAIAGGLIVSQV 1000 GK EA A +R RPILMT+LA +LG +PL + +GAGS + +GI + GG++ + + Sbjct: 956 GKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATL 1015 Query: 1001 LTLFTTPVIYLGFDSL 1016 L +F PV ++ Sbjct: 1016 LAIFFVPVFFVVIRRC 1031
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 48.7 bits (116), Expect = 3e-08 Identities = 26/131 (19%), Positives = 53/131 (40%), Gaps = 11/131 (8%) Query: 91 GEMPIVLSALGTVTPLANV-TVKTQLSGYLQSVSFQEGQIVKKGDVLAQIDPRP------ 143 G++ IV +A G +T +K + ++ + +EG+ V+KGDVL ++ Sbjct: 78 GQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTL 137 Query: 144 -YQVALENAEGTHARDAALLATARLDLKRYQTLLSQ---DSIASQTVDTQASLVKQYEGA 199 Q +L A R L + L+ L + +++ + V SL+K+ Sbjct: 138 KTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFST 197 Query: 200 VKTDQAAIDSA 210 + + + Sbjct: 198 WQNQKYQKELN 208 Score = 43.3 bits (102), Expect = 2e-06 Identities = 32/191 (16%), Positives = 63/191 (32%), Gaps = 19/191 (9%) Query: 145 QVALENAEGTHARDAALLAT--ARLDLKRYQTLLSQDSIASQTVDTQASLVKQYEGAVKT 202 + A+ E + L ++L+ + L +++ T + ++ + T Sbjct: 251 KHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQT--T 308 Query: 203 DQAA-----IDSAKLNLTYARITAPVSGRV-GLRQVDPGNYVTPGDTNGIVVIMQLQPMS 256 D + + + I APVS +V L+ G VT +T +M + P Sbjct: 309 DNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAET-----LMVIVPED 363 Query: 257 VIFTTSEDNLPQILKQVNAGQ--KLSVTAYNRNNTVPLE-TGSLATLDNQIDTSTGTV-K 312 + + + +N GQ + V A+ L LD D G V Sbjct: 364 DTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVFN 423 Query: 313 LRANFDNKEGM 323 + + + Sbjct: 424 VIISIEENCLS 434
>NEISSPPORIN#Neisseria sp. porin signature. Length = 348 Score = 30.3 bits (68), Expect = 0.007 Identities = 15/35 (42%), Positives = 22/35 (62%) Query: 57 SRITATLVSAGFLFQLPDSERFVLTASVLELSHGF 91 S+ T+ LVSAG+L +++ V TAS + L H F Sbjct: 314 SKRTSALVSAGWLQGGKGADKIVSTASAVVLRHKF 348
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 29.2 bits (65), Expect = 0.006 Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 5/73 (6%) Query: 57 ALDQVASTVNQQINAAKAGIASAASAV---PPLSA--SGLASAAQAQIDAAASAVVAHAA 111 A+D +T++ + + +GI++AA+ P+SA + ++A+ A+ H A Sbjct: 363 AIDASLTTISTVLASVSSGISAAATTSLVGAPVSALVGAVTGIISGILEASKQAMFEHVA 422 Query: 112 SEAGAKIAEAGKK 124 S+ IAE KK Sbjct: 423 SKMADVIAEWEKK 435
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 27.8 bits (62), Expect = 0.029 Identities = 8/30 (26%), Positives = 15/30 (50%) Query: 6 LNIALFGATGTIGSRIAAEAVRRGHRVTAL 35 + + GA G IG ++ + GH+V + Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGI 30
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 36.5 bits (84), Expect = 9e-05 Identities = 45/255 (17%), Positives = 85/255 (33%), Gaps = 23/255 (9%) Query: 49 PTRAVSNDVNLTEMMLALGLKDRLVGYTGIGGWKTGTARVRDALRGVPELASQYPSLEVL 108 P R V+ + E++LALG+ G ++ + + P+LE+L Sbjct: 35 PNRIVALEWLPVELLLALGIVP--YGVADTINYRLWVSEPPLPDSVIDVGLRTEPNLELL 92 Query: 109 AAARADFYLAGWNYGMHVGGPVTPATLAPFGIRTYELTESCSHVMKQSAASFDDVFRDLT 168 + F + YG P A +AP + + + ++S LT Sbjct: 93 TEMKPSFMVWSAGYGP---SPEMLARIAPGRGFNFSDGKQPLAMARKS----------LT 139 Query: 169 NLGRIFGVDARAAQVVAGMRARL-AAVSRAIGRPAPLRVFVYDSGTDKPMTAGGLAMPTA 227 + + + + A +A + + R + R A + + G ++ Sbjct: 140 EMADLLNLQSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQE 199 Query: 228 LLAAAGARNVMDDLPRSW--TQVSWESVVA-RDPQVIVIVDYSAVTAAQKQQFLAGQPAL 284 +L G N W T VS + + A +D V+ + L P Sbjct: 200 ILDEYGIPNAWQGETNFWGSTAVSIDRLAAYKDVDVLCF---DHDNSKDMDA-LMATPLW 255 Query: 285 ARVAAIRERRFVVIP 299 + +R RF +P Sbjct: 256 QAMPFVRAGRFQRVP 270
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 76.4 bits (188), Expect = 3e-18 Identities = 28/136 (20%), Positives = 61/136 (44%), Gaps = 3/136 (2%) Query: 9 RVLLIEDDDRLAQLVREYLDGYEFAVTVVRRGDLAVAAVREHQPALVILDLMLPNLDGME 68 +L+ +DD + ++ + L + V + + LV+ D+++P+ + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 69 VCRRIRA-FTNVPVLILTARADVYDQVAGLETGADDYVTKPIEPRVLVARARALL--RRA 125 + RI+ ++PVL+++A+ + E GA DY+ KP + L+ L + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 126 QPAAAEAPAVAPDALV 141 +P+ E + LV Sbjct: 125 RPSKLEDDSQDGMPLV 140
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 34.4 bits (78), Expect = 0.001 Identities = 13/36 (36%), Positives = 21/36 (58%) Query: 227 PTQVFDDGARVYVQFSDMKHVPAIFTETSAGRVLMS 262 P+++FDDG Y F ++ PAIF G++ M+ Sbjct: 416 PSEIFDDGTFTYFGFKNITLQPAIFVVQPDGKLSMT 451
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 95.3 bits (237), Expect = 3e-24 Identities = 94/395 (23%), Positives = 146/395 (36%), Gaps = 73/395 (18%) Query: 1 MKRTTLSLISLASFAAMPVAHAQSSVTLYGVIDTSI-TYVNHAQGKDNAWMLGNSSAGNL 59 MK++ ++L AA+PVA A + VTLYG I + T + A A + + Sbjct: 1 MKKSLIALT----LAALPVA-AMADVTLYGTIKAGVETSRSVAHNGAQAASVETGTGIVD 55 Query: 60 AGSRWGVKGTEDLGGGLKALFQLENGFDPSNGRQGQGGRLFGRQAFVGLTSDRYGTLTFG 119 GS+ G KG EDLG GLKA++Q+E G RQ+F+GL +G L G Sbjct: 56 LGSKIGFKGQEDLGNGLKAIWQVEQK----ASIAGTDSGWGNRQSFIGLKGG-FGKLRVG 110 Query: 120 RQYDPLVDLVQGITADNYLGSAFATPGDVDNYDNSFRVDN---AVKYTSAVYSGLQFAAM 176 R + D + + + D + + +V+Y S ++GL + Sbjct: 111 RLN--------SVLKDTGDINPWDSKSDYLGVNKIAEPEARLISVRYDSPEFAGLSGSVQ 162 Query: 177 YSFGGIAGSTGAAQSYSAAVSYNNGPFSVAGGYFHATNSPASNGVRNGWTSSSDGTFDGP 236 Y+ AG ++SY A +Y NG F V G + + Sbjct: 163 YALNDNAGR-HNSESYHAGFNYKNGGFFVQYGGAYKR--------------HHQVQENVN 207 Query: 237 INSGYASAHSFGIARIAGQYVAGPFTFGVGYSNAQYRRDASSVFGSNEHYNTGQGFVNYQ 296 I H R+ Y + S A ++DA V + H + + Sbjct: 208 IEK--YQIH-----RLVSGYDND----ALYASVAVQQQDAKLVEENYSHNSQTEVAATLA 256 Query: 297 -----ATNALLVGVGYSYTRSGGDTSATYHQVSAGADYSLSKRTDVYLTAAYQHASGQTG 351 T + G+ + + + Y QV GA+Y SKRT ++A + Q G Sbjct: 257 YRFGNVTPRVSYAHGFKGSFDATNYNNDYDQVVVGAEYDFSKRTSALVSAGWL----QEG 312 Query: 352 DGNGGSMAAQASIGSYGYAGTSSQTMVNLGLRHRF 386 G T +GLRH+F Sbjct: 313 KG----------------ESKFVSTAGGVGLRHKF 331
>cloacin#Cloacin signature. Length = 551 Score = 33.5 bits (76), Expect = 0.002 Identities = 26/100 (26%), Positives = 37/100 (37%), Gaps = 7/100 (7%) Query: 33 GSISQGLGGGGSSSGGGDTISTSGGNGSSGTSGTSGTSGSSGTSGTSGTSGTSGTSGTSG 92 G G+GGG S G + + G GS G SG G + G SGT G Sbjct: 23 GPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLS 82 Query: 93 TSGTSGTSG-------TSGSSGTSGTSGVSSNAVGTVLAS 125 G +G S ++G S A+ ++A+ Sbjct: 83 AVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIADIMAA 122 Score = 32.4 bits (73), Expect = 0.005 Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 4/87 (4%) Query: 42 GGSSSGGGDTISTSGGNGSSGTSGTSGTSGSSGTSGTSGTS----GTSGTSGTSGTSGTS 97 GG G ++ GN + G +G G+S SG S + G SG+ G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 98 GTSGTSGSSGTSGTSGVSSNAVGTVLA 124 G G +G+SG +G + +AV +A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVA 89 Score = 29.7 bits (66), Expect = 0.032 Identities = 26/80 (32%), Positives = 31/80 (38%), Gaps = 10/80 (12%) Query: 32 SGSISQGLGGGGSSSGGGDTISTSGGNGSSGTSGTSGTSGSSGTSGTSGTSGTSGTSGTS 91 SG+I+ G G G G D G SS + G SGS G G G +G S Sbjct: 17 SGNINGGPTGLGVGGGASD-----GSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNS 71 Query: 92 GTSGTSGTSGTSGSSGTSGT 111 G G SGT G+ Sbjct: 72 G-----GGSGTGGNLSAVAA 86
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 52.5 bits (126), Expect = 7e-11 Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 8/122 (6%) Query: 4 LTGVGVFLAWAVLVALEDIRHRRIPNSLVIGGFVSAFVLAGHSPFGISVNQALIGVLIGF 63 + V + D+ +P+ L + + F +S+ A+IG + G+ Sbjct: 134 TLAALLLTWVLVALTFIDLDKMLLPDQLTLPLLWGGLLFNLLGGF-VSLGDAVIGAMAGY 192 Query: 64 LSLFPFFVL-------RVMGAADVKVFAVLGAWCGPHALLWLWIIASLLAFAHAGTLVFA 116 L L+ + MG D K+ A LGAW G AL + +++SL+ L+ Sbjct: 193 LVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSLVGAFMGIGLILL 252 Query: 117 TR 118 Sbjct: 253 RN 254
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 136 bits (345), Expect = 5e-37 Identities = 64/251 (25%), Positives = 115/251 (45%), Gaps = 15/251 (5%) Query: 162 VQVDVRVVEFSRSVLKQAGLNFFKQSNGFAFGAFAPTGLTSITGTPGGSLTYNTSVPIS- 220 V V+ + E + G+ + ++ G F +GL T G + S Sbjct: 347 VLVEAIIAEVQDADGLNLGIQWANKNAGM--TQFTNSGLPISTAIAGANQYNKDGTVSSS 404 Query: 221 -----SAFNLVVNSVSRGLF-ADLSILEANNLARVLAQPTLVALSGQSANFLAGGEIPVP 274 S+FN + +G + L+ L ++ +LA P++V L A F G E+PV Sbjct: 405 LASALSSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMEATFNVGQEVPVL 464 Query: 275 VPQSLGT-----ISIEWKPYGVGLTVTPTVLSPRRIALKVAPESSQLDFVHSITINSVQV 329 + ++E K G+ L V P + + L++ E S + S T + + Sbjct: 465 TGSQTTSGDNIFNTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSTSSDLGA 524 Query: 330 PALTTRRADTTVELGDGESFVIGGLIDRETTSNVNKVPFLGDLPIIGAFFKNLSYQQNDK 389 TR + V +G GE+ V+GGL+D+ + +KVP LGD+P+IGA F++ S + + + Sbjct: 525 -TFNTRTVNNAVLVGSGETVVVGGLLDKSVSDTADKVPLLGDIPVIGALFRSTSKKVSKR 583 Query: 390 ELVIIVTPHLV 400 L++ + P ++ Sbjct: 584 NLMLFIRPTVI 594
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 36.7 bits (85), Expect = 2e-04 Identities = 14/69 (20%), Positives = 26/69 (37%) Query: 59 PALVFIDFSGDCAAASTVVAAVRAAHPGVPVVALGSLAQPEGALAALRAGVRDFVDFSAP 118 LV D A ++ ++ A P +PV+ + + A+ A G D++ Sbjct: 48 GDLVVTDVVMPDENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFD 107 Query: 119 ADEALRITR 127 E + I Sbjct: 108 LTELIGIIG 116
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 290 bits (745), Expect = 1e-95 Identities = 110/365 (30%), Positives = 169/365 (46%), Gaps = 36/365 (9%) Query: 116 IGKLVTQLRAHAAETLQPSELVAHSESMQALLHEVDTFADCDTNVLLHGETGVGKERIAQ 175 + + + ++ LV S +MQ + + D +++ GE+G GKE +A+ Sbjct: 119 LAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVAR 178 Query: 176 LLHEKHSRYRHGEFVPVNCGAIPDGLFESLFFGHAKGSFTGAVVAHKGYFEQAAGGTLFL 235 LH+ + + R+G FV +N AIP L ES FGH KG+FTGA G FEQA GGTLFL Sbjct: 179 ALHD-YGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFL 237 Query: 236 DEVGDLPLYQQVKLLRVLEDGAVLRVGATAPVKVDFRLVAASNKKLPQLVKEGLFRADLY 295 DE+GD+P+ Q +LLRVL+ G VG P++ D R+VAA+NK L Q + +GLFR DLY Sbjct: 238 DEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLY 297 Query: 296 YRLAVIELSIPSLEERGAVDKIALFKSFVAQVVGEERLAQLSDLPYWLTDSVADS----Y 351 YRL V+ L +P L +R D L + FV ++ + + Sbjct: 298 YRLNVVPLRLPPLRDRAE-DIPDLVRHFV------QQAEKEGLDVKRFDQEALELMKAHP 350 Query: 352 FPGNVRELRNLAERVGV------------------------TVRQTGGWDAARLQRLIAH 387 +PGNVREL NL R+ + + + + + Sbjct: 351 WPGNVRELENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEE 410 Query: 388 ARSAAQPVPAESAAEVFVDRSKWDMNERNRVISALDANGWRRQDTAQQLGISRKVLWEKM 447 ++ + E +++AL A + A LG++R L +K+ Sbjct: 411 NMRQYFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKI 470 Query: 448 RKYQI 452 R+ + Sbjct: 471 RELGV 475
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 33.3 bits (76), Expect = 7e-04 Identities = 10/112 (8%), Positives = 36/112 (32%), Gaps = 7/112 (6%) Query: 125 DETRAEAIYRDFSHQAERLAVNELRA-AKLESQKAQMDKQIEVTQDRARRL------QAD 177 AEA + + + R S + ++++ + + Sbjct: 128 TALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRL 187 Query: 178 ISIARQQQAAVADRQKSVRSETAALQAQQAQLQSQLRALQQQVRSLQREADA 229 S+ ++Q + +++ +A++ + +++ + R + D Sbjct: 188 TSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDD 239 Score = 30.6 bits (69), Expect = 0.005 Identities = 21/166 (12%), Positives = 57/166 (34%), Gaps = 16/166 (9%) Query: 71 VDDLQRQIQAHSLTEMRTSYNGSYGASLLFNVKDGAYFVALFQQKAFWRVIKTYDETRAE 130 Q + L + R Y + + L + F V + Sbjct: 136 TLKTQSSLLQARLEQTR------YQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTS 189 Query: 131 AIYRDFSHQAERLAVNELRAAKLESQKAQMDKQIEVTQDRARRLQADISIARQ------- 183 I FS + EL K +++ + +I ++ +R ++ + Sbjct: 190 LIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAI 249 Query: 184 QQAAVADRQK---SVRSETAALQAQQAQLQSQLRALQQQVRSLQRE 226 + AV +++ +E ++Q Q++S++ + +++ + + + Sbjct: 250 AKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQL 295
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 68.1 bits (166), Expect = 7e-16 Identities = 19/74 (25%), Positives = 30/74 (40%) Query: 28 TKARILDAAEDLFIEHGFEAMSMRQITSRATVNLAAVNYHFGSKEALIHAMLSRRLDQLN 87 T+ ILD A LF + G + S+ +I A V A+ +HF K L + + Sbjct: 12 TRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIG 71 Query: 88 QERLGILDRFDAQL 101 + L +F Sbjct: 72 ELELEYQAKFPGDP 85
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 65.2 bits (159), Expect = 1e-13 Identities = 74/312 (23%), Positives = 122/312 (39%), Gaps = 15/312 (4%) Query: 11 TIAAYLGWTLDAFDFFLMVFVLKDIAAEFASTIPAVA---FALTLTLAMRPLGALIFGRL 67 I LDA L++ VL + + + A L L M+ A + G L Sbjct: 7 LIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGAL 66 Query: 68 ADRFGRRPTLMVNIACYSLLELASGFAPSLTALLVLRALFGIAMGGEWGVGSALTMETVP 127 +DRFGRRP L+V++A ++ AP L L + R + GI G V A + Sbjct: 67 SDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGIT-GATGAVAGAYIADITD 125 Query: 128 THARGFVSGLLQAGYPSGYLLASVVFGLFYQTIGWRGMFMVGVLPALLVLYVRAHVPES- 186 R G + A + G + V+ GL F L L L +PES Sbjct: 126 GDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESH 185 Query: 187 PAWKQMEKRARPSLGATLKQNWKLTIYAIVLMTAF--NFFSHGTQDLYPTFLREQHHFDP 244 ++ +R + A+ + +T+ A ++ F L+ F ++ H+D Sbjct: 186 KGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDA 245 Query: 245 HTVSWITIVLNI-GAIVGGLSFGTISERIGRRRAIFIAALIALPVLPLWAF-SSGPVA-- 300 T+ I ++ + G ++ R+G RRA+ + + L AF + G +A Sbjct: 246 TTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFP 305 Query: 301 ----LAAGAFLM 308 LA+G M Sbjct: 306 IMVLLASGGIGM 317
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 32.5 bits (74), Expect = 0.003 Identities = 50/318 (15%), Positives = 111/318 (34%), Gaps = 37/318 (11%) Query: 57 TTQLLNTAGVFAAGF-LMRPIGGWLFGRIADRHGRRAAMMISVLMMCGGSLVIAVLPTYA 115 + + G+ A + LM+ + G ++DR GRR +++S+ ++A P Sbjct: 38 SNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFL- 96 Query: 116 QIGALAPALLLVARLFQGLSVGGEYGTSATYMSEVALKGRR----GFFASFQYVTLIGGQ 171 +L + R+ G++ G + Y++++ R GF ++ ++ G Sbjct: 97 -------WVLYIGRIVAGIT-GATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGP 148 Query: 172 LCALLVLVILQQTLSAGELKAWGWRIPFVVGAAAALIS-----LYLRKSLDETSTSASRD 226 + G + + PF AA ++ L +S R+ Sbjct: 149 VL-------------GGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRRE 195 Query: 227 KKDAGT-IRGVWQHKG-AFFTVVGFTAGGSLIFYTFTTYMQKYLVNTAGMHAKTASNVMT 284 + R A V F L+ + + A T + Sbjct: 196 ALNPLASFRWARGMTVVAALMAVFFIM--QLVGQVPAALWVIFGEDRFHWDATTIGISLA 253 Query: 285 VALLVYMLMQP-VFGALSDKIGRRTSMILFGSFAVIGTVPLMHALKGVTSPVAAFVLITV 343 +++ L Q + G ++ ++G R +++L G + L A +G + +L + Sbjct: 254 AFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASG 313 Query: 344 ALAIVSFYTSISGLIKAE 361 + + + +S + E Sbjct: 314 GIGMPALQAMLSRQVDEE 331
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 105 bits (262), Expect = 3e-30 Identities = 46/177 (25%), Positives = 88/177 (49%), Gaps = 3/177 (1%) Query: 1 MARKTREESLAIKHRILDAAELALLERGVAQTAMADLAEAAGMSRGAVYGHYRNKMEVCL 60 MARKT++E+ + ILD A ++GV+ T++ ++A+AAG++RGA+Y H+++K ++ Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60 Query: 61 AMCDRAFARTSEGFDAGDGLP---PFATLRRAASHYLQECGEPGPMQRVLVILYTKCEQS 117 + + + + E P + LR H L+ + ++ I++ KCE Sbjct: 61 EIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFV 120 Query: 118 EENGALQRRRMLLELQMLRITKALLRRAIAAGELAVDLDVHLAAVYLVSLLEGVFAS 174 E +Q+ + L L+ + L+ I A L DL AA+ + + G+ + Sbjct: 121 GEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMEN 177
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 39.4 bits (92), Expect = 2e-05 Identities = 20/133 (15%), Positives = 43/133 (32%), Gaps = 5/133 (3%) Query: 69 EVRARVAGIVIARTYEEGQEVKQGAVLFRIDPAPLKAARDAAQGALAKAQAAALAATDKR 128 E++ IV +EG+ V++G VL ++ +A Q +L +A+ Sbjct: 98 EIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILS 157 Query: 129 RRYDDLVRDRAVSERDHTEAVAADTQAKAEVASAKAELA-----RAQLQLDYATVTAPIA 183 R + + ++ + + K + + + Q +L+ A Sbjct: 158 RSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERL 217 Query: 184 GRARRALVTEGAL 196 R E Sbjct: 218 TVLARINRYENLS 230 Score = 34.4 bits (79), Expect = 7e-04 Identities = 14/101 (13%), Positives = 39/101 (38%), Gaps = 10/101 (9%) Query: 103 LKAARDAAQGALAKAQAAALAATDKRRRYDDLVRDRAVSERDHTEAVAADTQAKAEVASA 162 + L + ++ L+A ++ + L ++ + + Q + Sbjct: 264 AVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKL---------RQTTDNIGLL 314 Query: 163 KAELARAQLQLDYATVTAPIAGR-ARRALVTEGALVGQDQA 202 ELA+ + + + + AP++ + + + TEG +V + Sbjct: 315 TLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAET 355
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1066 bits (2758), Expect = 0.0 Identities = 514/1032 (49%), Positives = 709/1032 (68%), Gaps = 6/1032 (0%) Query: 1 MARFFIDRPVFAWVIAIFIMLGGLFAIRALPVAQYPDIAPPVVSIYATYPGASAQVVEES 60 MA FFI RP+FAWV+AI +M+ G AI LPVAQYP IAPP VS+ A YPGA AQ V+++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VTALIEREMNGAPGLLYTSATS-SAGAASLYLTFKQGVNADLAAVEVQNRLKTVDARLPE 119 VT +IE+ MNG L+Y S+TS SAG+ ++ LTF+ G + D+A V+VQN+L+ LP+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 120 PVRRDGIQVEKAADNIQLVVSLTSDDGRMTDVQLGEYASANVVQALRRVEGVGKVQFWGA 179 V++ GI VEK++ + +V SD+ T + +Y ++NV L R+ GVG VQ +GA Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 180 EYAMRIWPDPVKLAGHGLTASDIASAVRAHNARVTIGDIGRSAVPDSAPIAATVFADAPL 239 +YAMRIW D L + LT D+ + ++ N ++ G +G + + A++ A Sbjct: 181 QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240 Query: 240 KTPADFGAIALRAQPDGSALFLRDVARIEFGGNDYNYPSYVNGKVATGMGIKLAPGSNAV 299 K P +FG + LR DGS + L+DVAR+E GG +YN + +NGK A G+GIKLA G+NA+ Sbjct: 241 KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300 Query: 300 STEKRVRATMDELSRYFPPGVKYQIPYETSSFVRVSMNKVVTTLIEAGVLVFLVMFLFMQ 359 T K ++A + EL +FP G+K PY+T+ FV++S+++VV TL EA +LVFLVM+LF+Q Sbjct: 301 DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360 Query: 360 NLRATLIPTLVVPVALAGTFGVMYAAGFSINVLTMFGMVLAIGILVDDAIVVVENVERLM 419 N+RATLIPT+ VPV L GTF ++ A G+SIN LTMFGMVLAIG+LVDDAIVVVENVER+M Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 Query: 420 VEEGLAPYDATVKAMKQISGAIVGITVVLTSVFVPMAFFGGAVGNIYRQFALSLAVSIGF 479 +E+ L P +AT K+M QI GA+VGI +VL++VF+PMAFFGG+ G IYRQF++++ ++ Sbjct: 421 MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480 Query: 480 SAFLALSLTPALCATLLKPVSGDHHE-KRGFFGGFNRFVARATQRYATRVGAMLKKPVRW 538 S +AL LTPALCATLLKPVS +HHE K GFFG FN + Y VG +L R+ Sbjct: 481 SVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRY 540 Query: 539 LVVYGALTAAAALMLTQLPTAFLPDEDQGNFMVMVIRPQGTPLAETMQSVRAVESAIRRD 598 L++Y + A ++ +LP++FLP+EDQG F+ M+ P G T + + V ++ Sbjct: 541 LLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKN 600 Query: 599 EPTAY--TYALGGFNLYGEGPNGGMIFVTLKNWKERKATRDHVQSIVARINERFAGTPNT 656 E + + GF+ G+ N GM FV+LK W+ER + ++++ R + Sbjct: 601 EKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDG 660 Query: 657 TVFAMNSPALPDLGSSSGFDFRLQNRGGLDYATFSAAREQLLAVGGKDRA-LTDLMFAGT 715 V N PA+ +LG+++GFDF L ++ GL + + AR QLL + + A L + G Sbjct: 661 FVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGL 720 Query: 716 QDAPQLKLDIDRAKASALGVSMDEINTTLAVMFGSDYIGDFMHGTQVRRVMVQADGRHRL 775 +D Q KL++D+ KA ALGVS+ +IN T++ G Y+ DF+ +V+++ VQAD + R+ Sbjct: 721 EDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRM 780 Query: 776 DPDDVKKLRVRNARGEMVPLAAFTTLHWTLGPPQLTRYNGYPSFTINGSAAAGHSSGEAM 835 P+DV KL VR+A GEMVP +AFTT HW G P+L RYNG PS I G AA G SSG+AM Sbjct: 781 LPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAM 840 Query: 836 SAIERIAAKLPAGIGYAWSGQSFEERLSGAQAPMLFALSVLVVFLALAALYESWSIPFAV 895 + +E +A+KLPAGIGY W+G S++ERLSG QAP L A+S +VVFL LAALYESWSIP +V Sbjct: 841 ALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSV 900 Query: 896 MLVVPLGVIGAVLGVTLRAMPNDIYFKVGLIATIGLSAKNAILIVEVAKDLVAQR-MSLV 954 MLVVPLG++G +L TL ND+YF VGL+ TIGLSAKNAILIVE AKDL+ + +V Sbjct: 901 MLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVV 960 Query: 955 DAALEAARLRLRPIVMTSLAFGVGVLPLAFASGAASGAQMAIGTGVLGGVITATVLAVFL 1014 +A L A R+RLRPI+MTSLAF +GVLPLA ++GA SGAQ A+G GV+GG+++AT+LA+F Sbjct: 961 EATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFF 1020 Query: 1015 VPLFFVTVGRLF 1026 VP+FFV + R F Sbjct: 1021 VPVFFVVIRRCF 1032
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 68.3 bits (167), Expect = 2e-15 Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 1/120 (0%) Query: 3 IRILLVEDDVPLSALIADYLRQHHYRVDTLFDGAGAVPAIVASRPDLVLLDVNLPGKDGF 62 IL+ +DD + ++ L + Y V + A I A DLV+ DV +P ++ F Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 63 EICREARMHYDGI-VIMVTGRDEPFDELLGLELGADDFLRKPVEPRLLLARIKAQLRRTR 121 ++ + + V++++ ++ + E GA D+L KP + L+ I L + Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 38.7 bits (90), Expect = 6e-05 Identities = 20/166 (12%), Positives = 48/166 (28%), Gaps = 13/166 (7%) Query: 173 APGSPLDRFGPGTGASVQQGARGALDALEAPVNLWQAGFDASWELDLFGRVRRSVEAAGA 232 G L + + + +L +Q + EL+ ++ E Sbjct: 119 RKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSI-ELNKLPELKLPDEPYFQ 177 Query: 233 QASAAIASRDDALL-----SLEAEVAQTYLQLRGAQAQRALADDLQRAQRELLDLTREQ- 286 S R +L+ + + + Q L L +A+R L + + + Sbjct: 178 NVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRL 237 Query: 287 ------AAHGLASDLDVRSAEARLAQIRAQLPQFDQQIVLLRNGLA 326 + V E + + +L + Q+ + + + Sbjct: 238 DDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEIL 283
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 104 bits (261), Expect = 4e-26 Identities = 74/341 (21%), Positives = 146/341 (42%), Gaps = 20/341 (5%) Query: 24 IAIVVTLAAFMEVLDTTIVNVALPHIAGTMSASYDEATWTLTSYLVANGIVLPISGFLGR 83 I I + + +F VL+ ++NV+LP IA + W T++++ I + G L Sbjct: 15 ILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSD 74 Query: 84 LLGRKRYFLLCIAAFTVCSFLCGVATNLGELIVF-RVLQGLFGGGLQPNQQSIILDTF-P 141 LG KR L I S + V + L++ R +QG G P +++ + P Sbjct: 75 QLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGA-GAAAFPALVMVVVARYIP 133 Query: 142 PEQRNRAFSISAIAIVVAPVLGPTLGGWITDHFSWRWVFLLNVPIGALTVLAVMQLVEDP 201 E R +AF + + + +GP +GG I + W +LL +P+ +T++ V L++ Sbjct: 134 KENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWS--YLLLIPM--ITIITVPFLMKLL 189 Query: 202 PWRRDAERGISIDYIGIGLIAIGLGCLQVMLDRGEDEDWFGSNFIRVFAVLSVLGLVGAT 261 ++ D GI L+++G+ + F +++ F ++SVL + Sbjct: 190 K--KEVRIKGHFDIKGIILMSVGIVFFML----------FTTSYSISFLIVSVLSFLIFV 237 Query: 262 LWLLRTKKPVVDLSCLRDRNFALGCVTIATFAAVLYGSAVIVPQLAQQRLGY-TATLAGL 320 + + P VD ++ F +G + + G +VP + + TA + + Sbjct: 238 KHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSV 297 Query: 321 VLSPGALLITLEIPLVSRLMPHVQTRYLVGFGFVLLCASLI 361 ++ PG + + + + L+ Y++ G L S + Sbjct: 298 IIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFL 338
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 113 bits (285), Expect = 2e-29 Identities = 58/405 (14%), Positives = 125/405 (30%), Gaps = 85/405 (20%) Query: 131 KRPGKKPLIILGAVVLVLLIGGLVW-WFATRNQESTDDA--YTDGNAIAVAPHVSGYVTR 187 + P + ++ ++ L+ + +T + G + + P + V Sbjct: 50 ETPVSRRPRLVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKE 109 Query: 188 LAVDDNTFVRRGDVLVEIDPRDYRAQVDAAQAQLGLAQAQLDAARVQLD---IARVQYPA 244 + V + VR+GDVL+++ A Q+ L QA+L+ R Q+ I + P Sbjct: 110 IIVKEGESVRKGDVLLKLTALGAEADTLKTQSS--LLQARLEQTRYQILSRSIELNKLPE 167 Query: 245 Q---YRQARAQIESAEAAYRQALAAQSRQRAVDARATSQQAIDAADAQRATADANVAMAQ 301 + E +L + + + + +D A+R T A + + Sbjct: 168 LKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYE 227 Query: 302 AQA----------------------------RTASLVPQQIRQAETAVEERRQQVLQARA 333 + ++R ++ +E+ ++L A+ Sbjct: 228 NLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKE 287 Query: 334 -----------------------------QLETANLNLSYCEMRAPSDGWVTRRNVQ-LG 363 +L +RAP V + V G Sbjct: 288 EYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEG 347 Query: 364 SFLQPGTSIFSIVTP---RVWVTANFKESQLERMRIGDRVDVSVDAYPD---LDLHGHVD 417 + ++ IV P + VTA + + + +G + V+A+P L G V Sbjct: 348 GVVTTAETLMVIV-PEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVK 406 Query: 418 SIQLGSGSRFSAFPTENATGNFVKIVQRVPVKIVL--DGPLPTRP 460 +I L + + G ++ + + + +P Sbjct: 407 NINLDA-------IEDQRLGLVFNVIISIEENCLSTGNKNIPLSS 444
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 66.6 bits (162), Expect = 1e-15 Identities = 29/194 (14%), Positives = 57/194 (29%), Gaps = 6/194 (3%) Query: 18 DVRDQIVAAATEHFSRYGYEKTTVSDLAKAIGFSKAYIYKFFESKQAIGEMICANCLREI 77 + R I+ A FS+ G T++ ++AKA G ++ IY F+ K + I I Sbjct: 11 ETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNI 70 Query: 78 -----ETDVRAAVAAAELPTEKLRRLFKVS-TEASLRLFFHDRKLYDIAASAATENWQSV 131 E + + E L + + + TE RL Q+ Sbjct: 71 GELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQ 130 Query: 132 QAYEARVQTLLQDVLQAGRQNGEFERKTPLDETATAIYLVMRPYLNPLLLQYNLDTTDAA 191 + ++ L+ + A + + + L Sbjct: 131 RNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQSFDLKKE 190 Query: 192 PAQLSSLVLRSLAP 205 +++L Sbjct: 191 ARDYVAILLEMYLL 204
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 41.0 bits (96), Expect = 6e-06 Identities = 18/118 (15%), Positives = 39/118 (33%), Gaps = 9/118 (7%) Query: 70 GKVLERLVDTGQTVKRGQPLMRLDPVD-----LKLAARARDEAVAAARARA--RQTAEDE 122 V E +V G++V++G L++L + LK + + R + R ++ Sbjct: 105 SIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNK 164 Query: 123 ARYRDLRGTGAISASAYDQIKAAADAAKAQLSAAEADADVARNATGYAQLVADGDGVV 180 L + +++ K Q S + + A+ V+ Sbjct: 165 LPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELN--LDKKRAERLTVL 220
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 437 bits (1125), Expect = e-138 Identities = 218/1055 (20%), Positives = 424/1055 (40%), Gaps = 65/1055 (6%) Query: 8 LSALAVRERAITLFLICLISLAGLVSFFKLGRAEDPAFTIKVMTIITAWPGATAQEMHDQ 67 ++ +R L ++ +AG ++ +L A+ P +++ +PGA AQ + D Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 68 VAEKIEKRMQELRWYDRTETYT-RPGLAITTLTLLDSTPP----SEVQEQFYQARKKIGD 122 V + IE+ M + + + G TLT T P +VQ + A Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPL--- 117 Query: 123 EATNLPAGVIGPMVNDEYADVTFAL---FALKAKGEPQRLLVRDAEA-LRQRLLHVAGVK 178 LP V ++ E + ++ + F G Q + + ++ L + GV Sbjct: 118 ----LPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVG 173 Query: 179 KVDIIGEQPERIYVQLSHDRLATLGVSPQEVFAALNGQNVLTAAGSVETRGP------EI 232 V + G Q + + L D L ++P +V L QN AAG + Sbjct: 174 DVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNA 232 Query: 233 FIRVDGAFDKLQKIRDTPIVSQ--GRTLKLSDIATVERGYEDPSTFLIRNNGEPALLLGI 290 I F ++ + G ++L D+A VE G E+ + R NG+PA LGI Sbjct: 233 SIIAQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIA-RINGKPAAGLGI 291 Query: 291 VMRDGWNGLDLGRALDHEVGAINAGLPLGMSLTKVTDQSVNISSAVDEFMVK-FFAALLV 349 + G N LD +A+ ++ + P GM + D + + ++ E + F A +LV Sbjct: 292 KLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLV 351 Query: 350 VMLVSFVSMGWRVGLVVAAAVPLTLAVVFVVMAATGKNFDRITLGSLILALGLLVDDAII 409 +++ R L+ AVP+ L F ++AA G + + +T+ ++LA+GLLVDDAI+ Sbjct: 352 FLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIV 411 Query: 410 AIEMMV-VKMEEGYGRVAASAYAWSHTAAPMLAGTLVTAVGFMPNGFARSTAGEYTSNMF 468 +E + V ME+ A+ + S ++ +V + F+P F + G Sbjct: 412 VVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFS 471 Query: 469 WIVGIALIASWVVAVVFTPYLGVKML--------PDFRKIEGGHDAIYDTPRYNRFRQVL 520 + A+ S +VA++ TP L +L + G + +D N + + Sbjct: 472 ITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFD-HSVNHYTNSV 530 Query: 521 TRVIAHKWLVAGSVVGLFVLAILGMAVVKKQFFPISDRPEVLVEVQMPYGTSISQTSAAA 580 +++ + ++ + F P D+ L +Q+P G + +T Sbjct: 531 GKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVL 590 Query: 581 SKVEAWLAKQKEARIVTAYVGQGAPRFYLAMGPELPDPSFAKIVV-----RTDSQDERDA 635 +V + K ++A + + + G + + + A + + R ++ +A Sbjct: 591 DQVTDYYLKNEKANVESVFTVNG-----FSFSGQAQNAGMAFVSLKPWEERNGDENSAEA 645 Query: 636 LKARLRRAVAD-----GLAPEARVRVTQLVFGPYSPFPVAYRITGPDPDTLRGIASEV-G 689 + R + + + V + + G D L +++ G Sbjct: 646 VIHRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELID--QAGLGHDALTQARNQLLG 703 Query: 690 NVMNGSPMMHTVNADWGTRAPTLHFTLQQDRLQAVGLTSSAVAQQLQFLLTGVPVTAVRE 749 + +V + + Q++ QA+G++ S + Q + L G V + Sbjct: 704 MAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFID 763 Query: 750 DIRTVQVIARSGGDARLDPARLDDFTLAGANGQRIPLSQVGKVDVRMEEPIMRWRDRVPT 809 R ++ ++ R+ P +D + ANG+ +P S P + + +P+ Sbjct: 764 RGRVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPS 823 Query: 810 VTVRGDIAEGLQPPDVSAAITKQLQPIVDKLPSGYRIEQAGSIEESGKATTAMLPLFPIM 869 + ++G+ A G D A + + + KLP+G + G + + L I Sbjct: 824 MEIQGEAAPGTSSGDAMALM----ENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAIS 879 Query: 870 LAITLVIIIFQVRSISAMVMVFMTSPLGLIGVVPTLILFRQPFGINALVGLIALSGILMR 929 + + + S S V V + PLG++GV+ LF Q + +VGL+ G+ + Sbjct: 880 FVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAK 939 Query: 930 NTLILIGQIHQ-NEQAGLDPFHAVVEATVQRARPVILTAMAAVLAFIPLTHSVFWGT--- 985 N ++++ E+ G A + A R RP+++T++A +L +PL S G+ Sbjct: 940 NAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQ 999 Query: 986 --LAYTLIGGTFAGTILTLVFLPAMYAIWFRIGPG 1018 + ++GG + T+L + F+P + + R G Sbjct: 1000 NAVGIGVMGGMVSATLLAIFFVPVFFVVIRRCFKG 1034 Score = 72.2 bits (177), Expect = 7e-15 Identities = 55/326 (16%), Positives = 126/326 (38%), Gaps = 24/326 (7%) Query: 712 LHFTLQQDRLQAVGLT----SSAVAQQLQFLLTGVPVTAVREDIRTVQVIARSGGDARLD 767 + L D L LT + + Q + G + + + + + Sbjct: 184 MRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFK-N 242 Query: 768 PARLDDFTL-AGANGQRIPLSQVGKVDVRMEE-PIMRWRDRVPTVTVRGDIAEGLQPPDV 825 P TL ++G + L V +V++ E ++ + P + +A G D Sbjct: 243 PEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDT 302 Query: 826 SAAITKQLQPIVDKLPSGYRIE----QAGSIEESGKATTAMLPLFPIMLAITLVIIIFQV 881 + AI +L + P G ++ ++ S + LF ++ + LV+ +F + Sbjct: 303 AKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLS--IHEVVKTLFEAIMLVFLVMYLF-L 359 Query: 882 RSISAMVMVFMTSPLGLIGVVPTLILFRQPFGINA--LVGLIALSGILMRNTLILIGQIH 939 +++ A ++ + P+ L+G IL + IN + G++ G+L+ + ++++ + Sbjct: 360 QNMRATLIPTIAVPVVLLGTF--AILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVE 417 Query: 940 Q-NEQAGLDPFHAVVEATVQRARPVILTAMAAVLAFIPL-----THSVFWGTLAYTLIGG 993 + + L P A ++ Q ++ AM FIP+ + + + T++ Sbjct: 418 RVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSA 477 Query: 994 TFAGTILTLVFLPAMYAIWFRIGPGR 1019 ++ L+ PA+ A + Sbjct: 478 MALSVLVALILTPALCATLLKPVSAE 503
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 101 bits (252), Expect = 8e-28 Identities = 55/185 (29%), Positives = 79/185 (42%), Gaps = 8/185 (4%) Query: 6 VVVVTGVSSGIGRATAEQFAKRGCRVFGTVRSIARTAPVAGVELIE--------MDVRDD 57 + +TG + GIG A A A +G + + + V E DVRD Sbjct: 10 IAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDS 69 Query: 58 ASVQSGIRTIVERAARIDVLVNNAGTSLIGAVEETSLAEAAALFDTNVFSILRTVQAVLP 117 A++ I ID+LVN AG G + S E A F N + ++V Sbjct: 70 AAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSK 129 Query: 118 HMRARRGGRIVNVSSVLGFLPAPYMGLYAASKHAVEGLTETLDHEVRQFGIRATLVEPSF 177 +M RR G IV V S +P M YA+SK A T+ L E+ ++ IR +V P Sbjct: 130 YMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPGS 189 Query: 178 TRTNL 182 T T++ Sbjct: 190 TETDM 194
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 80.5 bits (198), Expect = 5e-20 Identities = 69/262 (26%), Positives = 103/262 (39%), Gaps = 9/262 (3%) Query: 1 MTMQRFSGKVVVVTGAAQGIGRGVALRAAAEGGKVLFVD---RADFVADVAAEATGGETA 57 M + GK+ +TGAAQGIG VA A++G + VD + +A Sbjct: 1 MNAKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAE 60 Query: 58 GFVADLETYEGAHASIAYAVQRFGGIDILINGVGGAIRMRPFAEFEPAQIDAEIRRSLMP 117 F AD+ A + G IDIL+N V G +R + +A + Sbjct: 61 AFPADVRDSAAIDEITARIEREMGPIDILVN-VAGVLRPGLIHSLSDEEWEATFSVNSTG 119 Query: 118 TLYACHATLPHLIARGGGTIVNISSNA--TRGIRRVPYSAAKGGVNALTSALAMEYAEHN 175 A + +++ R G+IV + SN Y+++K T L +E AE+N Sbjct: 120 VFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYN 179 Query: 176 IRVVATAPGGTSAPPRRVPRNAAGDTEQEQAWMGEAVRQVTESTYFKRYGSLDEQIAPIL 235 IR +PG T + A + EQ G K+ + +L Sbjct: 180 IRCNIVSPGSTETDMQW--SLWADENGAEQVIKGSL-ETFKTGIPLKKLAKPSDIADAVL 236 Query: 236 FLASDEASYITGTVLPVAGGDT 257 FL S +A +IT L V GG T Sbjct: 237 FLVSGQAGHITMHNLCVDGGAT 258
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 51.8 bits (124), Expect = 2e-09 Identities = 28/141 (19%), Positives = 42/141 (29%), Gaps = 19/141 (13%) Query: 243 GRVRAVSRLARQMLDLAPAGPVAPVDLRQLFPGATPAQQRRLLTPARTPQRIARDDGSHV 302 G VR + L R++ L P + + P Sbjct: 353 GNVRELENLVRRLTALYPQDVITREIIENELRSEIPDS-----------------PIEKA 395 Query: 303 WVRTVRAPLDRATRARHADVLEDAADVCNVASAAGPQASLHEQSLDAIRRALDEHDGNVS 362 R+ + +A D + + L E I AL GN Sbjct: 396 AARSGSLSISQAVEENMRQYFASFGDA--LPPSGLYDRVLAEMEYPLILAALTATRGNQI 453 Query: 363 AAARQLGISRTTLYAKLRQLD 383 AA LG++R TL K+R+L Sbjct: 454 KAADLLGLNRNTLRKKIRELG 474
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 108 bits (271), Expect = 1e-30 Identities = 69/256 (26%), Positives = 119/256 (46%), Gaps = 10/256 (3%) Query: 10 LDGRIALVTGASSGIGRASAIELARRGAKVVVNARRKAELDRLVDEIATAGGNATAFAAD 69 ++G+IA +TGA+ GIG A A LA +GA + +L+++V + +A AF AD Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 70 VANEAELRKLFDFTVSTHGRLDVAFNNAGTEGVFAPMLEQDAQSYDRVFEPNVRGVFNSM 129 V + A + ++ G +D+ N AG + + ++ F N GVFN+ Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRP-GLIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 130 KFAAEIMLRQGKGSIINNASMGGVIGFENASVYIASKHAVIGMTKTASIEWFKRGVRVNA 189 + ++ M+ + GSI+ S + + + Y +SK A + TK +E + +R N Sbjct: 125 RSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNI 184 Query: 190 LCPGLIDTPFHHRGIWAS---EEARLA-----FAESTPAGRWASADEMATVVAFLASDDA 241 + PG +T +WA E + F P + A ++A V FL S A Sbjct: 185 VSPGSTETDM-QWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQA 243 Query: 242 SYVSGHALVADGGYSI 257 +++ H L DGG ++ Sbjct: 244 GHITMHNLCVDGGATL 259
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 37.6 bits (87), Expect = 8e-05 Identities = 25/138 (18%), Positives = 56/138 (40%), Gaps = 1/138 (0%) Query: 37 LSAIGDSLQMQPTAVGLMLTIYAWAVAVVSLPLTFVTRHVERRKLLSVALLVFIGSHVVT 96 L I + P + + T + ++ + ++ + ++LL +++ V+ Sbjct: 37 LPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIG 96 Query: 97 GVAWN-FTVLMIGRLGIACAHAVFWSISIPLAVRLAPSDRKSRALSLIAMGSAIAMVAGI 155 V + F++L++ R A F ++ + + R P + + +A LI A+ G Sbjct: 97 FVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGP 156 Query: 156 PLGRVIGEAFGWRVTFLI 173 +G +I W LI Sbjct: 157 AIGGMIAHYIHWSYLLLI 174
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.5 bits (63), Expect = 0.028 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 5/65 (7%) Query: 69 RVERLARLHAAAYQRLRAQVRPLPGARELLAALSNAGIRWAIATSGRMETAAINLEALGV 128 R E+ RL Q ++ L AA A +++ T+ T A ++ALG Sbjct: 755 RPEQELRLVETGVQ---GRLWALLTREGAPAAEGAAQKGYSVNTT--FVTIADLVQALGA 809 Query: 129 DPAKN 133 DP K+ Sbjct: 810 DPGKS 814
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 629 bits (1623), Expect = 0.0 Identities = 246/1074 (22%), Positives = 428/1074 (39%), Gaps = 64/1074 (5%) Query: 3 IVRLALRRPYTFVVLALLIFIAGPLALLRTPTDIFPSIDIPVVSIVWSYNGFSAEDMAKR 62 + +RRP VLA+++ +AG LA+L+ P +P+I P VS+ +Y G A+ + Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 63 ITSNYERALTSDVDDIEHIESQSLN-GVSVVKIFFHPGADINRAIAEAASNAASILRILP 121 +T E+ + +D++ ++ S S + G + + F G D + A + + +LP Sbjct: 61 VTQVIEQNMNG-IDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLP 119 Query: 122 PGTLPPNIITYNASTVPILQLGLSSDTLAEQQ--LYDLGNSFIRTQLATVQGAAVPLPFG 179 I +S+ ++ G SD Q + D S ++ L+ + G FG Sbjct: 120 QEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG 179 Query: 180 GKIRQIVVDLDTRALQAKGLAPIDVVNAINAQNLILPGGT------AKIGTHEYNVQMNG 233 + + + LD L L P+DV+N + QN + G ++ Sbjct: 180 AQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQT 238 Query: 234 STQTVAALNDLPVKTIG-GNVVYVRDVAHVRDGYAPQTNIVRVDGKRAALLTVEKTGSAS 292 + + ++ G+VV ++DVA V G I R++GK AA L ++ A+ Sbjct: 239 RFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGAN 298 Query: 293 TLTIIDQVKAMLPKIAAGLPKALHIAPLDDQSVFVKAAVQGVVREALIAACLTALMILLF 352 L +KA L ++ P+ + + D + FV+ ++ VV+ A L L++ LF Sbjct: 299 ALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLF 358 Query: 353 LGSWRATLIIAITIPLAVLTSLLALSALGQTINIMTLGGLALAVGILVDDATVAIENITH 412 L + RATLI I +P+ +L + L+A G +IN +T+ G+ LA+G+LVDDA V +EN+ Sbjct: 359 LQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER 418 Query: 413 HL-ELGAPLEEAILTGSGEIAVPTFVSTLSICIVFVPMFLLTGVARYLFVPLAEAVIFAM 471 + E P +EA +I + + VF+PM G ++ + ++ AM Sbjct: 419 VMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAM 478 Query: 472 IASYFFSRTLVPTLAMALMRAKGSGRPPRGVFAPLVHVARFQAAFEHRFEAVRLRYRALL 531 S + L P L L++ + F F F+ Y + Sbjct: 479 ALSVLVALILTPALCATLLKPVSAEHHEN--------KGGFFGWFNTTFDHSVNHYTNSV 530 Query: 532 SAAIARRRRFAAAFLLACIASTGLYAFAGQDFFPSVDTGEIRLHLRAPTGTRIEETARLT 591 + R+ + L L+ F P D G ++ P G E T + Sbjct: 531 GKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQK-- 588 Query: 592 DEVEAKIRGVIPANQLAGVLDNIGVPVSGINLTYDSSDPIGTEDADVLVTLKP------D 645 V ++ N+ A V V + V+LKP D Sbjct: 589 --VLDQVTDYYLKNEKANVESVFTVNGFSFS-------GQAQNAGMAFVSLKPWEERNGD 639 Query: 646 HASTAAYVAKLRNVLAQSFPGVTFAFLPADIVSQILNFGLPAPIDIQIVGNKLDQNRAVA 705 S A + + + L + G F IV I G D Sbjct: 640 ENSAEAVIHRAKMELGKIRDGFVIPFNMPAIVELG-TATGFDFELIDQAGLGHDALTQAR 698 Query: 706 NALLAKLRGVRG-LVDARIQQPGDEPAINVNVDRTKAIQAGLEQRDVAQNLLIALSGSSQ 764 N LL LV R D + VD+ KA G+ D+ Q + AL G+ Sbjct: 699 NQLLGMAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGT-- 756 Query: 765 TTPNFWLDPRNGVSYPVLVQTPQYTVNSLQSLANVPLPAGTARSPQTPAGGPAAGAPAQN 824 N ++D G + VQ + + + + + Sbjct: 757 -YVNDFIDR--GRVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVP-------------- 799 Query: 825 LLGALGSFSRATQQAVVSHYNVQPVLDIFASVQGRDLGGVTGDVTKLVDAARAQLPPGAS 884 A + + YN P ++I G +GD L++ ++LP G Sbjct: 800 -FSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAP---GTSSGDAMALMENLASKLPAGIG 855 Query: 885 IVLRGQVQAMHESFTGLLGGLALAISLVYLLMVVNFQSWLDPLVIVGGLPASLAGIAWML 944 G S +A++ +V+L + ++SW P+ ++ +P + G+ Sbjct: 856 YDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAA 915 Query: 945 FVTRTTLSVPALTGTILCIGIATANSILVVNAARELL-AGGEPPWQAALDAGFARFRPVV 1003 + V + G + IG++ N+IL+V A++L+ G+ +A L A R RP++ Sbjct: 916 TLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPIL 975 Query: 1004 MTALAMLIGMLPMALGLGDGGEQNAPLGRAVIGGLAFGTVSTLLFVPVLFGFVH 1057 MT+LA ++G+LP+A+ G G +G V+GG+ T+ + FVPV F + Sbjct: 976 MTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFVVIR 1029
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 45.2 bits (107), Expect = 4e-07 Identities = 19/126 (15%), Positives = 43/126 (34%), Gaps = 12/126 (9%) Query: 91 APADQTLTLPGSVAPYADA-SIYARTSGYIAHWSVDLGTHVKAGQTLAQISAPDLDAQLR 149 + T G + + I + + V G V+ G L +++A Sbjct: 78 GQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTAL------- 130 Query: 150 QARADEASAQANYDYAKSTAQRWQDMLKTQSVSQQDTDTKVADMNAKRAMLASAQANVAH 209 A AD Q++ A+ R+Q + ++ +++ + + ++ V Sbjct: 131 GAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLP----ELKLPDEPYFQNVSEEEVLR 186 Query: 210 LAELVS 215 L L+ Sbjct: 187 LTSLIK 192
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 35.6 bits (82), Expect = 4e-04 Identities = 26/199 (13%), Positives = 56/199 (28%), Gaps = 16/199 (8%) Query: 237 QAETQLESTRTQ--DTDIDASRAQLQHAIATLVGESASTFALPPRVQAF---HVPAIPAG 291 AE T++ ++ +R Q+ L P Q V + + Sbjct: 131 GAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSL 190 Query: 292 VPSQLLERRPDIAAAERRVAAANAQIGEARAAFFPDLVLSASAGLESSFFAPW------- 344 + Q + E + A+ A LS F+ Sbjct: 191 IKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIA 250 Query: 345 ----LAAPSLFWSLGPQLAGTLFDGGRRSASLRGAHAQYDGAVADYRQTVLVAFQQVEDQ 400 L + + +L + + + A +Y ++ +L +Q D Sbjct: 251 KHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDN 310 Query: 401 LSALDALASEAGSQQRATD 419 + L ++ +Q+A+ Sbjct: 311 IGLLTLELAKNEERQQASV 329
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 30.5 bits (69), Expect = 0.019 Identities = 10/17 (58%), Positives = 15/17 (88%) Query: 387 GAVQVGADADLVVWDPA 403 G+++VG ADLV+W+PA Sbjct: 424 GSLEVGKRADLVLWNPA 440
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 30.6 bits (69), Expect = 0.015 Identities = 13/95 (13%), Positives = 34/95 (35%), Gaps = 17/95 (17%) Query: 254 MNAVDFIEQVRQADTLANVPVGRRVVVIGGGNTAIDAAVQSRKLGA----------ERVT 303 NA D + ++++A V++ A+++ + GA + Sbjct: 60 ENAFDLLPRIKKARP-------DLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELI 112 Query: 304 MVYRRGVDAMSATWAEREFAQKSGVTLVTNAKPVR 338 + R + ++ E + G+ LV + ++ Sbjct: 113 GIIGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQ 147
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 61.2 bits (148), Expect = 1e-13 Identities = 25/167 (14%), Positives = 65/167 (38%), Gaps = 11/167 (6%) Query: 21 RRRKAHIRESNEAHLLACAEAVFAERGLAGASTAMIAERAGLPKANVHYYFPTKLALYRR 80 R+ K +E+ + +L A +F+++G++ S IA+ AG+ + ++++F K L+ Sbjct: 3 RKTKQEAQETRQH-ILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61 Query: 81 VLDDLFEDWHRAAGSFEAD--DDPVEAIGGYVRAKMTLSQRRPLGSKVWANEIIHGAEHM 138 + + + ++A DP+ + + + + ++ I H E + Sbjct: 62 IWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEE-RRRLLMEIIFHKCEFV 120 Query: 139 QD------ILSQRVKPWFDARVRVIEGWIARG-LLAPIDPHALMYLI 178 + +D + ++ I L A + ++ Sbjct: 121 GEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIM 167
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 80.9 bits (199), Expect = 2e-20 Identities = 63/199 (31%), Positives = 86/199 (43%), Gaps = 13/199 (6%) Query: 3 IKDRVFLITGAGSGLGAAVARMVVAQGGKAVLLDVNDEAGAGLANELGAAARF---VKTD 59 I+ ++ ITGA G+G AVAR + +QG +D N E + + L A AR D Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 60 VTSEADGQAAVAAARDAFGRVDALVNCAGVAPGEKVVGRDGLHSLDRFARAVSINLVGTF 119 V A A G +D LVN AGV G S + + S+N G F Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLR----PGLIHSLSDEEWEATFSVNSTGVF 121 Query: 120 NMIRLAAEAMSKQDADAEGERGVIINTASVAAFDGQIGQAAYAASKSGVVGMTLPIAREL 179 N R ++ M + G I+ S A + AAYA+SK+ V T + EL Sbjct: 122 NASRSVSKYMMDR------RSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLEL 175 Query: 180 ARFGIRVVTVAPGIFATPM 198 A + IR V+PG T M Sbjct: 176 AEYNIRCNIVSPGSTETDM 194
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 39.0 bits (90), Expect = 1e-04 Identities = 51/258 (19%), Positives = 86/258 (33%), Gaps = 31/258 (12%) Query: 566 DHADAQPASAIDRAASARVPQGAADPHAAAKPADGIVPFAALPASSLAGTSVSAASGTTS 625 + A A+ + A + AA+ +A + A + A G S Sbjct: 224 EQAAAEAKRKAEEQARQQAAIRAANTYAMPANGSVVATAAGRGL-------IQVAQGAAS 276 Query: 626 IAATSAPAVSNHVPDAVKPVEAAEPAAPLSAVAQ-RATPATYWTAPTIPPAATQTTV--- 681 +A + A+ + V A+ P+ A + T P + + + Sbjct: 277 LAQAISDAI-----AVLGRVLASAPSVMAVGFASLTYSSRTAEQWQDQTPDSVRYALGMD 331 Query: 682 AAEPPKSPAVQPFAATSAASAVNASP-LTGTAHGSTAHASAPASASNIAPVATAV---SP 737 AA+ P+V A A+ V+ LT A G+T S ++ P A V + Sbjct: 332 AAKLGLPPSVNLNAVAKASGTVDLPMRLTNEARGNTTTLSVVSTDGVSVPKAVPVRMAAY 391 Query: 738 VGVTGTASASPSQPAASAPPVT-SVASASPAGATDLTDGSLSRASTPASTDAPAVMPSTT 796 TG + A APP+ + ASP G + + ++TP V T Sbjct: 392 NATTGLYEVTVPSTTAEAPPLILTWTPASPPGNQNPS------STTPVVPKPVPVYEGAT 445 Query: 797 ----GASVSTFGSTAQAP 810 A+ T+ P Sbjct: 446 LTPVKATPETYPGVITLP 463
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 29.9 bits (67), Expect = 0.018 Identities = 21/86 (24%), Positives = 26/86 (30%), Gaps = 13/86 (15%) Query: 423 LPVDAQDATAIGVVPAAKPEPETAVRATAAKRTR------------AKAPAVTVAPARTP 470 LP AQ + V PA P+ AV+ +AP V P P Sbjct: 43 LPAPAQPISVTMVAPADLEPPQ-AVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKP 101 Query: 471 AAKAAPAAKRTAGSPRAKAARVRKAA 496 K P K K R A+ Sbjct: 102 KPKPKPVKKVEQPKRDVKPVESRPAS 127
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 74.3 bits (182), Expect = 1e-18 Identities = 39/210 (18%), Positives = 73/210 (34%), Gaps = 12/210 (5%) Query: 5 KIKRDPEGTRRRILMAAAEEFANGGLFGARVDQIARRAETNERMLYYYFGSKEQLFTAVL 64 K K++ + TR+ IL A F+ G+ + +IA+ A +Y++F K LF+ + Sbjct: 4 KTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIW 63 Query: 65 EHAFSALTEAERVLDLDGVAPVEAVTR---LAHFVWDYYRDHPELLRLINNENLHEARYL 121 E + S + E E +V R + + LL I + Sbjct: 64 ELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEM 123 Query: 122 HKSTR-IREMMSPIVAKLGNVLMRGQKAGLFRGDVDPLRFYVTLSGLGYYIVSNRFTLAA 180 + R + ++ L +A + D+ R + + G YI + Sbjct: 124 AVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRG---YISG---LMEN 177 Query: 181 TLGRDFTDTDERAEMVRMNTEVLLAYLLRR 210 L + + + R +LL L Sbjct: 178 WLFAP--QSFDLKKEARDYVAILLEMYLLC 205
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 42.0 bits (98), Expect = 3e-06 Identities = 24/137 (17%), Positives = 44/137 (32%), Gaps = 3/137 (2%) Query: 203 ERREREAADARAAARRAASAAKP--VAEPSAAQPG-SQPDTPAAAPAADDAEAKKRAIIA 259 E+ E++A + A R A AK A + S +T A Sbjct: 1052 EKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEK 1111 Query: 260 AALERARKKKEELSGQGAGPKNTEGVSAAVQAQIDAAEARRKRLAEQQAQRDAEAASGSN 319 A +E + ++ PK + + QA+ + E Q+Q + A + Sbjct: 1112 AKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQP 1171 Query: 320 DHDNDAGNDDPDGPSAP 336 + + + P S Sbjct: 1172 AKETSSNVEQPVTESTT 1188
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 109 bits (273), Expect = 5e-28 Identities = 77/398 (19%), Positives = 159/398 (39%), Gaps = 16/398 (4%) Query: 25 LAVLDGAIANVALPTIARDLHASDAASIWIVNAYQLAVTITLLPLASLGERIGYRRIYIA 84 +VL+ + NV+LP IA D + A++ W+ A+ L +I L +++G +R+ + Sbjct: 25 FSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLF 84 Query: 85 GLALFTAASLGCALAGS-LPMLAVMRVIQGFGAAGIMSVNAALVRMIYPSSLLGRGLSIN 143 G+ + S+ + S +L + R IQG GAA ++ +V P G+ + Sbjct: 85 GIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLI 144 Query: 144 AMVVALSSAIGPTVASAILSFASWPWLFAVNVPIGIAAVLGSVRALPANPLHDAPYDFPS 203 +VA+ +GP + I + W +L + + I I V ++ L +D Sbjct: 145 GSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPM-ITIITVPFLMKLLKKEVRIKGHFDIKG 203 Query: 204 ALM--NACVFGLLITAVDGLGHGEGHAYVAAELAVAFVVGYFFVKRQLSQPAPLLPVDLM 261 ++ VF +L T + L V+ + FVK P + L Sbjct: 204 IILMSVGIVFFMLFTTSYSISF----------LIVSVLSFLIFVKHIRKVTDPFVDPGLG 253 Query: 262 RIPMFALSVYTSTASFTSQMLAFVALPFWLQNSLGFSQVETG-LYMTPWPLVIVFAAPLA 320 + F + V F + +P+ +++ S E G + + P + ++ + Sbjct: 254 KNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIG 313 Query: 321 GVLSDRYSAGILGGIGLALFAAGLLSLATIGAHPGTVDIVWRMALCGAGFGLFQSPNNRA 380 G+L DR + IG+ + L+ + + + + + G ++ + Sbjct: 314 GILVDRRGPLYVLNIGVTFLSVSFLTASFL-LETTSWFMTIIIVFVLGGLSFTKTVISTI 372 Query: 381 MLSSAPRERSGGAGGMLSTARLTGQTLGAALVALIFGL 418 + SS ++ +G +L+ + G A+V + + Sbjct: 373 VSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSI 410
>TYPE3IMPPROT#Type III secretion system inner membrane P protein family signature. Length = 224 Score = 28.6 bits (64), Expect = 0.046 Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 3/77 (3%) Query: 92 YRGDLARFDRQEYAGYLRVNAM---LAKQLAALLRPDDLIWVHDYHLLPFAHYLRELGVK 148 YR L ++ +E + + ++ + R D I L A+ L E+ Sbjct: 99 YRDYLIKYSDRELVQFFENAQLKRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSA 158 Query: 149 NPIGFFLHIPFPSPDML 165 IGF+L++PF D++ Sbjct: 159 FKIGFYLYLPFVVVDLV 175
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 42.2 bits (99), Expect = 3e-06 Identities = 31/153 (20%), Positives = 58/153 (37%), Gaps = 1/153 (0%) Query: 31 LFALATAGFITVLTEALPAGLLPLMSADLHVTEALIGQLVTVYALGSIVAAIPLVAATRA 90 L L F +VL E + LP ++ D + A + T + L + + Sbjct: 16 LIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQ 75 Query: 91 MRRRRLLLAALAGFVVSNALTAAS-PYYALTLAARFVAGMSAGLLWALLAGYASRLVDPS 149 + +RLLL + + + +++L + ARF+ G A AL+ +R + Sbjct: 76 LGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKE 135 Query: 150 LRGRAIAVAMLGIPAAMSIGIPAGTALGAMFGW 182 RG+A + + +G G + W Sbjct: 136 NRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHW 168
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.8 bits (69), Expect = 0.011 Identities = 14/35 (40%), Positives = 18/35 (51%) Query: 32 VVFVGPSGCGKSTLMRMIAGLEDISNGDLLIDGAK 66 VV G G GKSTL+ + GL+ S+ I K Sbjct: 599 VVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTGK 633
>ACETATEKNASE#Acetate kinase family signature. Length = 400 Score = 29.8 bits (67), Expect = 0.010 Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 2/55 (3%) Query: 62 RVLAGASDAVGRTLSADDV-DAIRRAVEAAAV-NAPMVDGIDAALAAIDLTTACA 114 RV+ G L DDV AI +E A + N ++GI A + A Sbjct: 90 RVVHGGEYFTSSVLITDDVLKAITDCIELAPLHNPANIEGIKACTQIMPDVPMVA 144
>MALTOSEBP#Maltose binding protein signature. Length = 396 Score = 34.3 bits (78), Expect = 8e-04 Identities = 95/440 (21%), Positives = 160/440 (36%), Gaps = 67/440 (15%) Query: 6 LDAAARCFAGAALATAACAASA------GTLTIATLNNPDMIELKKLSPAFEKANPDIKL 59 + AR A +AL T +ASA G L I + L ++ FEK D + Sbjct: 3 IKTGARILALSALTTMMFSASALAKIEEGKLVIWINGDKGYNGLAEVGKKFEK---DTGI 59 Query: 60 NWVILEENVLRQRATTDITTGSGQFDVMAIGTYETPQWGKRGWLAPITGLPADYDLNDIV 119 + + L ++ TG G D++ + + G LA IT P + + Sbjct: 60 KVTVEHPDKLEEKFPQVAATGDGP-DIIFWAHDRFGGYAQSGLLAEIT--PDKAFQDKLY 116 Query: 120 KTARDSLSYNGQLYALPFYVESSMTFYRKDLFAAKGLKMPDQP-TYDQIAEFADKLTDKS 178 D++ YNG+L A P VE+ Y KDL +P+ P T+++I +L K Sbjct: 117 PFTWDAVRYNGKLIAYPIAVEALSLIYNKDL-------LPNPPKTWEEIPALDKELKAKG 169 Query: 179 KGTYGICLRGKAGWGENMAYVSTVVNTFGGRWFD-ENW-----NAQLTSPEWKKAINFYV 232 K L + + ++ GG F EN + + + K + F V Sbjct: 170 KSALMFNL-------QEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLV 222 Query: 233 NLLKKNGPPGASSNGFNENLTLTASGKCAMWIDATVAAGMLYNKQQSQVADKIGFAAAPV 292 +L+K + E G+ AM I+ A N S+V G P Sbjct: 223 DLIKNKHMNADTDYSIAE--AAFNKGETAMTINGPWAWS---NIDTSKV--NYGVTVLPT 275 Query: 293 AATPKGSHWLWAWALAVPKTSKQQDAARKFIA-WATSKQYIEMVGKDEGWASVPPGTRTS 351 ++ + + S ++ A++F+ + + + +E V KD+ Sbjct: 276 FKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDK------------ 323 Query: 352 TYQRAEYKAAAPFSDFVLKAIETADPNDPSLKKV---PYTGVQYVGIPEFQSFGTVVGQS 408 P LK+ E DP + G IP+ +F V + Sbjct: 324 -----------PLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTA 372 Query: 409 IAGAVAGQMSVDQALAAGQA 428 + A +G+ +VD+AL Q Sbjct: 373 VINAASGRQTVDEALKDAQT 392
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 130 bits (327), Expect = 1e-38 Identities = 82/259 (31%), Positives = 122/259 (47%), Gaps = 15/259 (5%) Query: 21 LEDKVAILTGAASGIGEAVAQRYLDEGARCVLVDVKPAGGSLARLIEANPGR-AVAVTAD 79 +E K+A +TGAA GIGEAVA+ +GA VD P R A A AD Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 80 VTRRDDITRIVATAVERFGGVDILFNNAALFDMRPLLDESWDVFDRLFSVNVKGLFFLMQ 139 V I I A G +DIL N A + + S + ++ FSVN G+F + Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 140 AVAQRMVEQGRGGKIVNMSSQAGRRGEALVSHYCATKAAVISYTQSAALALAPHRINVNG 199 +V++ M+++ R G IV + S ++ Y ++KAA + +T+ L LA + I N Sbjct: 126 SVSKYMMDR-RSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNI 184 Query: 200 IAPGVVDTPMWEQVDALFARYENRPLGEKKRLVGEA------VPLGRMGVPGDLTGAALF 253 ++PG +T M + A G ++ + G +PL ++ P D+ A LF Sbjct: 185 VSPGSTETDMQWSLWA-------DENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLF 237 Query: 254 LASADADYITAQTLNVDGG 272 L S A +IT L VDGG Sbjct: 238 LVSGQAGHITMHNLCVDGG 256
>ADHESNFAMILY#Adhesin family signature. Length = 309 Score = 134 bits (338), Expect = 2e-39 Identities = 73/302 (24%), Positives = 124/302 (41%), Gaps = 32/302 (10%) Query: 22 AVAALSFAAPVVAQAATVNVVAAENFYGDVASQIGGRHVAVTSILSNPDQDPHLFEASPK 81 + A + + VVA + D+ I G + + SI+ QDPH +E P+ Sbjct: 16 ILVACASGKKDTTSGQKLKVVATNSIIADITKNIAGDKIDLHSIVP-IGQDPHEYEPLPE 74 Query: 82 TARALQHAQVVIYNG----ADYDPWMGKLLGASKQAKRA-TIVVADLVGK--------KA 128 + A ++ YNG + W KL+ +K+ + V+D V K Sbjct: 75 DVKKTSEADLIFYNGINLETGGNAWFTKLVENAKKTENKDYFAVSDGVDVIYLEGQNEKG 134 Query: 129 GDNPHLWYDPATMPAAARAIAAELGRADPANKAEYEANLQKFVASL----KPVDDKIAAL 184 ++PH W + A+ IA +L DP NK YE NL+++ L K DK + Sbjct: 135 KEDPHAWLNLENGIIFAKNIAKQLSAKDPNNKEFYEKNLKEYTDKLDKLDKESKDKFNKI 194 Query: 185 RAKYKGVPVTATEPVFGYMSDAIGLDMRNQRFQLATMNDTEASAQDVAAFEGDLRKKQVR 244 A+ K + VT +E F Y S A G+ + + E + + + LR+ +V Sbjct: 195 PAEKKLI-VT-SEGAFKYFSKAYGV---PSAYIWEINTEEEGTPEQIKTLVEKLRQTKVP 249 Query: 245 VLIYNSQAEEPMTKRMLKIARDGGVP------TVSVTETQPAGKTFQQWMGGQLDALGNA 298 L S ++ + M +++D +P T S+ E G ++ M LD + Sbjct: 250 SLFVESSVDD---RPMKTVSQDTNIPIYAQIFTDSIAEQGKEGDSYYSMMKYNLDKIAEG 306 Query: 299 LS 300 L+ Sbjct: 307 LA 308
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.9 bits (64), Expect = 0.026 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 4/70 (5%) Query: 2 TATPHALALDRVTLELGGRTILRDVSFSIEPG---EFVGVL-GPNGAGKTTLMRAVLGLV 57 T + R +G ++ V+ +EPG ++ VL G G GK+TL+ ++GL Sbjct: 561 TPDDYKPRRLRYLQLVGKYILMGHVARVMEPGCKFDYSVVLEGTGGIGKSTLINTLVGLD 620 Query: 58 PVSAGTLSVG 67 S +G Sbjct: 621 FFSDTHFDIG 630
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1271 bits (3291), Expect = 0.0 Identities = 680/1035 (65%), Positives = 828/1035 (80%), Gaps = 2/1035 (0%) Query: 1 MAKFFIDRPIFAWVIAIILMLAGVAAIFTLPISQYPTIAPPSIQITANYPGASAKTVEDT 60 MA FFI RPIFAWV+AIILM+AG AI LP++QYPTIAPP++ ++ANYPGA A+TV+DT Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VTQVIEQQMSGLDNFLYMSSTSDDSGNATITLTFAPGTNADIAQVQVQNKLSLATPVLPQ 120 VTQVIEQ M+G+DN +YMSSTSD +G+ TITLTF GT+ DIAQVQVQNKL LATP+LPQ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 121 VVQQLGLSVTKSSSSFLLVLAFNSEDGSMNKYDLANFVASHVKDPISRLNGVGTVTLFGS 180 VQQ G+SV KSSSS+L+V F S++ + D++++VAS+VKD +SRLNGVG V LFG+ Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 181 QYAMRIWLDPNRLTNYGLTPVDVSSAITAQNVQIAGGQIGGTPATPGTVLQATITESTLL 240 QYAMRIWLD + L Y LTPVDV + + QN QIA GQ+GGTPA PG L A+I T Sbjct: 181 QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240 Query: 241 QTPEQFGNILLKVNQDGSQVRLKDVAQIGLGGENYNFDTKYNGQPTAALGIQLATNANAL 300 + PE+FG + L+VN DGS VRLKDVA++ LGGENYN + NG+P A LGI+LAT ANAL Sbjct: 241 KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300 Query: 301 ATAKAVRAKIDELAPFFPHGLVVKYPYDTTPFVKLSIEEVVKTLLEGIVLVFLVMYLFLQ 360 TAKA++AK+ EL PFFP G+ V YPYDTTPFV+LSI EVVKTL E I+LVFLVMYLFLQ Sbjct: 301 DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360 Query: 361 NLRATIIPTIAVPVVLLGTFAIMSMVGFSINTLSMFGLVLAIGLLVDDAIVVVENVERVM 420 N+RAT+IPTIAVPVVLLGTFAI++ G+SINTL+MFG+VLAIGLLVDDAIVVVENVERVM Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 Query: 421 AEEGLSPKEATRKAMGQITGALVGVALVLSAVFVPVAFSGGSVGAIYRQFSLTIVSAMVL 480 E+ L PKEAT K+M QI GALVG+A+VLSAVF+P+AF GGS GAIYRQFS+TIVSAM L Sbjct: 421 MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480 Query: 481 SVLVALILTPALCATILKPIPQGHHEEKKGFFGWFNRTFNNSRDKYHVGVHHVIKRSGRW 540 SVLVALILTPALCAT+LKP+ HHE K GFFGWFN TF++S + Y V ++ +GR+ Sbjct: 481 SVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRY 540 Query: 541 LIIYLVVIVAVGLLFVRLPKSFLPDEDQGLMFVIVQTPSGSTQETTAKTLANISDYLLKD 600 L+IY +++ + +LF+RLP SFLP+EDQG+ ++Q P+G+TQE T K L ++DY LK+ Sbjct: 541 LLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKN 600 Query: 601 EKEIVESAFTVNGFSFAGRGQNSGLVFVRLKDYSQRQHANQKVQALIGRMFGRYGSYKDA 660 EK VES FTVNGFSF+G+ QN+G+ FV LK + +R +A+I R G +D Sbjct: 601 EKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDG 660 Query: 661 LVIPFNPPSIPELGTAAGFDFELTDNAGLGHDALMAARNQLLGMASKDP-TLQGVRPNGL 719 VIPFN P+I ELGTA GFDFEL D AGLGHDAL ARNQLLGMA++ P +L VRPNGL Sbjct: 661 FVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGL 720 Query: 720 NDTPQYKVNIDREKANALGVTADAIDQTFSIAWASKYVNNFLDTDGRIKKVYVQADAPFR 779 DT Q+K+ +D+EKA ALGV+ I+QT S A YVN+F+D GR+KK+YVQADA FR Sbjct: 721 EDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFID-RGRVKKLYVQADAKFR 779 Query: 780 MTPEDMNIWYVRNGSGGMVPFSAFSTGHWTYGSPKLERYNGVSAMEIQGQAAPGKSTGQA 839 M PED++ YVR+ +G MVPFSAF+T HW YGSP+LERYNG+ +MEIQG+AAPG S+G A Sbjct: 780 MLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDA 839 Query: 840 MAAMETLAKKLPVGIGYSWTGLSFQEIQSGSQAPILYAISILVVFLCLAALYESWSIPFS 899 MA ME LA KLP GIGY WTG+S+QE SG+QAP L AIS +VVFLCLAALYESWSIP S Sbjct: 840 MALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVS 899 Query: 900 VIMVVPLGVIGALLAATMRGLENDVFFQVGLLTTVGLSAKNAILIVEFARELQQTEKMGP 959 V++VVPLG++G LLAAT+ +NDV+F VGLLTT+GLSAKNAILIVEFA++L + E G Sbjct: 900 VMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGV 959 Query: 960 IEAALEAARLRLRPILMTSLAFILGVMPLAISNGAGSASQHAIGTGVIGGMITATFLAIF 1019 +EA L A R+RLRPILMTSLAFILGV+PLAISNGAGS +Q+A+G GV+GGM++AT LAIF Sbjct: 960 VEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIF 1019 Query: 1020 MIPMFFVKIRAIFSG 1034 +P+FFV IR F G Sbjct: 1020 FVPVFFVVIRRCFKG 1034 Score = 72.2 bits (177), Expect = 8e-15 Identities = 51/323 (15%), Positives = 110/323 (34%), Gaps = 13/323 (4%) Query: 724 QYKVNIDREKANALGVTADAIDQTFS---IAWASKYVNNFLDTDGRIKKVYVQADAPFRM 780 ++ +D + N +T + A+ + G+ + A F+ Sbjct: 183 AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFKN 242 Query: 781 TPEDMNIWYVRNGSGGMVPFSAFSTGHWTYGSPKLE---RYNGVSAMEIQGQAAPGKST- 836 E + N G +V + G R NG A + + A G + Sbjct: 243 PEEFGKVTLRVNSDGSVVRLKDVARV--ELGGENYNVIARINGKPAAGLGIKLATGANAL 300 Query: 837 ---GQAMAAMETLAKKLPVGIGYSWTGLSFQEIQSGSQAPILYAI-SILVVFLCLAALYE 892 A + L P G+ + + +Q + +I++VFL + + Sbjct: 301 DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360 Query: 893 SWSIPFSVIMVVPLGVIGALLAATMRGLENDVFFQVGLLTTVGLSAKNAILIVEFARELQ 952 + + VP+ ++G G + G++ +GL +AI++VE + Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 Query: 953 QTEKMGPIEAALEAARLRLRPILMTSLAFILGVMPLAISNGAGSASQHAIGTGVIGGMIT 1012 +K+ P EA ++ ++ ++ +P+A G+ A ++ M Sbjct: 421 MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480 Query: 1013 ATFLAIFMIPMFFVKIRAIFSGE 1035 + +A+ + P + S E Sbjct: 481 SVLVALILTPALCATLLKPVSAE 503
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 43.3 bits (102), Expect = 1e-06 Identities = 40/250 (16%), Positives = 83/250 (33%), Gaps = 25/250 (10%) Query: 61 LVAQVRARVDGIVLRREFTEGTDVKAGQRLYKIDPAPYIAALNSAKATLAKAQANLVTQN 120 ++A++ + + + + L A L + +A L Sbjct: 219 VLARINRYENLSRVEKS-----RLDDFSSLLHKQAIAKHAVLE-QENKYVEAVNELRVYK 272 Query: 121 ALVARYKVLVAANAVS----KQDYDNAVATQ-GQAAADVAAGKAAVDTAQINLGYTDVVS 175 + + + + + + Q + N + + Q ++ + + + + + Sbjct: 273 SQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRA 332 Query: 176 PISGRV-GISQVTPGAYVQASQATLMSTVQQLDPVYVD-LTQSSL-----EGLKLRQDVQ 228 P+S +V + T G V ++ TLM V + D + V L Q+ G V+ Sbjct: 333 PVSVKVQQLKVHTEGGVVTTAE-TLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVE 391 Query: 229 SGRLKTSGPGAAKVSLILEDGKTYSEPGKLQFSDVTVDQTTGSVTIRAVFPNPGRVLLPG 288 + G KV I D G + +++++ S N L G Sbjct: 392 AFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVIISIEENCLST------GNKNIPLSSG 445 Query: 289 MFVRARIEEG 298 M V A I+ G Sbjct: 446 MAVTAEIKTG 455
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 120 bits (303), Expect = 5e-36 Identities = 78/208 (37%), Positives = 115/208 (55%) Query: 22 MVRRTKEEALETRNRILDAAEHVFFEKGVSHTSLADIAQHAGVTRGAIYWHFANKSELFD 81 M R+TK+EA ETR ILD A +F ++GVS TSL +IA+ AGVTRGAIYWHF +KS+LF Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60 Query: 82 AMFDRVFLPIDELKRMPLDAPGGNPLEKVRQILIWCLLGVQRDPQLRRVFSILFMKCEYV 141 +++ I EL+ G+PL +R+ILI L + + R + I+F KCE+V Sbjct: 61 EIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFV 120 Query: 142 ADMEPLLQRNRAGMSEALHMIDADLAVAVGLKLLPERLDTWRATLMLHTLVSGFVRDMLM 201 +M + Q R E+ I+ L + K+LP L T RA +++ +SG + + L Sbjct: 121 GEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLF 180 Query: 202 LPDEIDAEQHAEKLVDGCFDMLRYSPAM 229 P D ++ A V +M P + Sbjct: 181 APQSFDLKKEARDYVAILLEMYLLCPTL 208
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 37.3 bits (86), Expect = 3e-05 Identities = 41/213 (19%), Positives = 73/213 (34%), Gaps = 21/213 (9%) Query: 11 RPVARRALIVIDVQNEYVTGNLPIEYPPLDVSLANIGRAIDAAHATGVPVIVV-----QH 65 P RA+++I Y P+ ANI + + G+PV+ Q+ Sbjct: 25 VPDPNRAVLLIHDMQNYFVDAFTAGASPVTELSANIRKLKNQCVQLGIPVVYTAQPGSQN 84 Query: 66 VAPAG--APIFAPGSDGVALHAVV----ASRPYAHLIEKAQASSFAGTDLAAWLDAHGID 119 + PG + + A ++ K + S+F T+L + G D Sbjct: 85 PDDRALLTDFWGPGLNSGPYEEKIITELAPEDDDLVLTKWRYSAFKRTNLLEMMRKEGRD 144 Query: 120 TLAVAGYMTHNCNASTVYHAAHAGLKVEYLNDATGALPYENEAGAVSAEEIHRAYGVVFQ 179 L + G H T A +K ++ DA A + E H+ Sbjct: 145 QLIITGIYAHIGCLVTACEAFMEDIKAFFVGDAV----------ADFSLEKHQMALEYAA 194 Query: 180 SNFAAVMSTDTWIAGLAGAPMPARDSVAASNRR 212 A + TD+ + L AP + + A + ++ Sbjct: 195 GRCAFTVMTDSLLDQLQNAPADVQKTSANTGKK 227
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 72.0 bits (176), Expect = 6e-16 Identities = 34/157 (21%), Positives = 61/157 (38%), Gaps = 26/157 (16%) Query: 124 LGSGFIVSADGYILTNAHVIDGANVVTVKLTDKR-----------EYKA-KVVGSDKQSD 171 + SG +V +LTN HV+D + L + A ++ + D Sbjct: 103 IASGVVV-GKDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGEGD 161 Query: 172 VAVLKIDA--------SGLPTVKIGDPAQSKVGQWVVAIGSPYGFDNTVTSGIISAKSRA 223 +A++K + + + A+++V Q + G P +K + Sbjct: 162 LAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYPGDKPVATMW---ESKGKI 218 Query: 224 LPDENYTPFIQTDVPVNPGNSGGPLFNLQGEVIGINS 260 + +Q D+ GNSG P+FN + EVIGI+ Sbjct: 219 TYLKGE--AMQYDLSTTGGNSGSPVFNEKNEVIGIHW 253
>YERSINIAYOPE#Yersinia virulence determinant YopE protein signature. Length = 219 Score = 28.2 bits (62), Expect = 0.039 Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 3/96 (3%) Query: 224 SGTVTDASGRILSGQTVEAFWNSL--RHAKPLTFGLNCALGAALMRPYIAELAKLCDTYV 281 S +V + SGR +S QT + + N+L R P L + L + + + Sbjct: 20 SSSVGEMSGRSVSQQTSDQYANNLAGRTESPQGSSLASRIIERLSSVAHSVIGFI-QRMF 78 Query: 282 SCYPNAGLPNPMSDTGFDETPDVTSGLLKEFAQAGL 317 S + + P +P S +K+ A L Sbjct: 79 SEGSHKPVVTPAPTPAQMPSPTSFSDSIKQLAAETL 114
>MECHCHANNEL#Bacterial mechano-sensitive ion channel signature. Length = 136 Score = 29.4 bits (66), Expect = 0.009 Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 3/58 (5%) Query: 24 GLIVGLAIAVVVALYITRSPSPFVSKVAPPPAD---NGASQPQQFDPNRALQGKTPGQ 78 G +V LA+ V++ + S V+ + PP G Q R QG P Sbjct: 14 GNVVDLAVGVIIGAAFGKIVSSLVADIIMPPLGLLIGGIDFKQFAVTLRDAQGDIPAV 71
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 72.8 bits (178), Expect = 2e-17 Identities = 48/184 (26%), Positives = 79/184 (42%), Gaps = 2/184 (1%) Query: 7 VFITGASSGLGLAMAEEYARQGATLALVARRTDALDAFARRFPKLSIS--VYSADVRDAD 64 FITGA+ G+G A+A A QGA +A V + L+ + + ADVRD+ Sbjct: 11 AFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDSA 70 Query: 65 ALATAAASFIAAHGCPDVVIANAGISQGAVTGQGDLAAFRDVMDINYYGMVATFEPFVGP 124 A+ A G D+++ AG+ + + + +N G+ Sbjct: 71 AIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSKY 130 Query: 125 MTAARHGTLVGVASVAGVRGLPGSGAYSASKSAAIKYLEALRVELRPAGVGVVTIAPGYI 184 M R G++V V S AY++SK+AA+ + + L +EL + ++PG Sbjct: 131 MMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPGST 190 Query: 185 RTPM 188 T M Sbjct: 191 ETDM 194
>BINARYTOXINB#Binary toxin B family signature. Length = 764 Score = 30.8 bits (69), Expect = 0.014 Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 14/93 (15%) Query: 224 RYDANPTYW--GTKPKVDRLIYAITPDPSVRLQK------VKAGECQIALSPKPQDVLAA 275 R +AN Y GT P IY + P S+ L K +KA E Q++ P + + Sbjct: 388 RLNANIRYVNTGTAP-----IYNVLPTTSLVLGKNQTLATIKAKENQLSQILAPNNYYPS 442 Query: 276 KGESALKVVQTPAFMTAFVALN-TQKKPLDSDK 307 K + + + F + + +N Q L+ K Sbjct: 443 KNLAPIALNAQDDFSSTPITMNYNQFLELEKTK 475
>FLGFLIJ#Flagellar FliJ protein signature. Length = 147 Score = 64.8 bits (157), Expect = 3e-16 Identities = 45/140 (32%), Positives = 74/140 (52%) Query: 1 MAHGFPLQLLLDRAQEDLDSAAKQLGTAQRDRTAAAEQLDALLRYRDEYHARFAQSAQSG 60 MA L L D A+++++ AA+ LG +R A EQL L+ Y++EY +G Sbjct: 1 MAEHGALATLKDLAEKEVEDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRNNLNSDMSAG 60 Query: 61 MPAGNWRNFQAFIDTLDAAIAQQRTVLAAAEVRIDEARPNWQQKKRTVGSYEILQARGVA 120 + + W N+Q FI TL+ AI Q R L ++D A +W++KK+ + +++ LQ R Sbjct: 61 ITSNRWINYQQFIQTLEKAITQHRQQLNQWTQKVDIALNSWREKKQRLQAWQTLQERQST 120 Query: 121 QEAQRDARREQRDADEHAAK 140 + R +Q+ DE A + Sbjct: 121 AALLAENRLDQKKMDEFAQR 140
>FLGHOOKFLIK#Flagellar hook-length control protein signature. Length = 375 Score = 69.5 bits (169), Expect = 5e-15 Identities = 70/230 (30%), Positives = 97/230 (42%), Gaps = 17/230 (7%) Query: 235 PTQVTPQTLQADANAQSGAQHALAAASNATDPAASATLAAGATAAAAAQANLQLSPAAGA 294 P+ V P + Q A +A A A A + A+ SP A Sbjct: 151 PSTVLPTEKPTLFTKLTSEQLTTAQPDDAPGTPAQPLTPLVAEAQSKAEVISTPSPVTAA 210 Query: 295 ------------IAAANAHALAPHVGTADWTDALSQKVVFLSNAHQQSAELTLNPPDLGP 342 + A L+ +G+ +W +LSQ + + QQSAEL L+P DLG Sbjct: 211 ASPLITPHQTQPLPTVAAPVLSAPLGSHEWQQSLSQHISLFTRQGQQSAELRLHPQDLGE 270 Query: 343 LQVVLRVADNHAHALFVSQHAQVRDAVEAALPKLREAMEAGGLGLGSATVSDGGLASQQQ 402 +Q+ L+V DN A VS H VR A+EAALP LR + G+ LG + +S + QQQ Sbjct: 271 VQISLKVDDNQAQIQMVSPHQHVRAALEAALPVLRTQLAESGIQLGQSNISGESFSGQQQ 330 Query: 403 QPNPQQTFAHGQSSRRGNGGPSAVDAPVDAAQSAPVAARASRAGLVDTFA 452 + QQ QS R N P A + + R + VD FA Sbjct: 331 AASQQQ-----QSQRTANHEPLAGEDDDTLPVPVSLQGRVTGNSGVDIFA 375
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 30.2 bits (68), Expect = 0.017 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 3/36 (8%) Query: 49 TPKNILMIGPTGVGKTEIAR---RLAKLADAPFIKI 81 T +++ G +G GK +AR K + PF+ I Sbjct: 159 TDLTLMITGESGTGKELVARALHDYGKRRNGPFVAI 194
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 89.5 bits (222), Expect = 2e-23 Identities = 31/127 (24%), Positives = 61/127 (48%) Query: 1 MSENNFLVIDDNEVFAGTLARGLERRGYAVQQAHDKETALRLAAGGKFQFITVDLHLGED 60 M+ LV DD+ L + L R GY V+ + T R A G + D+ + ++ Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 61 SGLSLIAPLCDLQPDARILVLTGYASIATAVQAVKEGADNYLAKPANVESILAALQTNAT 120 + L+ + +PD +LV++ + TA++A ++GA +YL KP ++ ++ + Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 121 EVQADEA 127 E + + Sbjct: 121 EPKRRPS 127 Score = 44.8 bits (106), Expect = 6e-08 Identities = 16/101 (15%), Positives = 32/101 (31%), Gaps = 3/101 (2%) Query: 75 DARILVLTGYASIATAVQAVKEGADNYLAKPANVESILAALQTNATEVQADEALENPVVL 134 I+ + I + L+ VE + + + L Sbjct: 375 TREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFGDALPPSGL---YDR 431 Query: 135 SVDRLEWEHIQRVLAENNNNISATARALNMHRRTLQRKLAK 175 + +E+ I L N A L ++R TL++K+ + Sbjct: 432 VLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRE 472
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 43.7 bits (103), Expect = 5e-07 Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 6/99 (6%) Query: 202 IPVISPIGFGEDGLSYNINADLVAGKLATVLNAEKLLMMTNIPGVM----DKDGNLLTDL 257 +PVI G G+ I+ DL KLA +NA+ +++T++ G + L ++ Sbjct: 197 VPVILEDG-EIKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNGAALYYGTEKEQWLREV 255 Query: 258 SAREIDALFEDGT-ISGGMLPKISSALDAAKSGVKSVHI 295 E+ +E+G +G M PK+ +A+ + G + I Sbjct: 256 KVEELRKYYEEGHFKAGSMGPKVLAAIRFIEWGGERAII 294 Score = 36.0 bits (83), Expect = 1e-04 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 10/56 (17%) Query: 53 GKTVVIKYGGNAMTEERLKQGF----------ARDVILLKLVGINPVIVHGGGPQI 98 GK VVI GGNA+ + K + AR + + G VI HG GPQ+ Sbjct: 2 GKRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQV 57
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 48.5 bits (115), Expect = 2e-09 Identities = 32/167 (19%), Positives = 55/167 (32%), Gaps = 14/167 (8%) Query: 2 ILQTLAAMLEAPKPEKITTAALAARLDVSEAALYRHFASKAKMYEGLIEFIEQALFGLVN 61 IL + + +A V+ A+Y HF K+ ++ + E E + L Sbjct: 16 ILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELEL 75 Query: 62 QIVAKEPNGVLQA-RTIALTMLNFAAKNPGMTRVL----TGEALVGEDERLTERVNQLLD 116 + AK P L R I + +L ++ VGE + + L Sbjct: 76 EYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQRNLCL 135 Query: 117 RIEATVKQCLRVARTEAQAPDGATPFVLPADYDPGARASLLVSYVIG 163 ++Q L+ LPAD A ++ Y+ G Sbjct: 136 ESYDRIEQTLKHCIEAKM---------LPADLMTRRAAIIMRGYISG 173
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.4 bits (68), Expect = 0.011 Identities = 33/224 (14%), Positives = 67/224 (29%), Gaps = 21/224 (9%) Query: 69 GAWR--MQQSSGE-----PHVAVAAATAPAAAAPDKAAPASGAAVQVAQNGAFAASAAQP 121 GAW+ ++ +G P V T + + N A P Sbjct: 965 GAWKYKLRNVNGRYDLYNPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAP 1024 Query: 122 ATIVNDDSASQTVASASASAASAADNSRLSRALANGADDGSGTAAAAGVAATAAAAAATT 181 A+ S + + A+NS+ + A A + Sbjct: 1025 V-------PPPAPATPSETTETVAENSKQESKTVEKNE--QDATETTAQNREVAKEAKSN 1075 Query: 182 KTAKADASKSTKVAAHGKTDTKTEAKADTKADTKAEARKHRKEQQAEL-----AQAKKRR 236 A ++ + + K TE K + + +A+ ++ Q K+ + Sbjct: 1076 VKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQ 1135 Query: 237 EATPTRTAKAAGKDDPDADLLAALVARTKPADKKLAAEKAQAVP 280 T A+ A ++DP ++ AD + A++ + Sbjct: 1136 SETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNV 1179
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 24.3 bits (53), Expect = 0.034 Identities = 10/28 (35%), Positives = 14/28 (50%) Query: 1 MDIQINQQTLTLPDGATVADALAAYGAR 28 D+Q+ T TL + V D +AA R Sbjct: 241 YDVQVMIHTDTLNESGFVEDTIAAIKGR 268
>PF05272#Virulence-associated E family protein Length = 892 Score = 33.5 bits (76), Expect = 0.002 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 4/43 (9%) Query: 409 EPGSRW---LVI-GKSGSGKSTFMRALAGLWPFGDGAIDAPVG 447 EPG ++ +V+ G G GKST + L GL F D D G Sbjct: 590 EPGCKFDYSVVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTG 632
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 86.6 bits (214), Expect = 2e-22 Identities = 71/259 (27%), Positives = 106/259 (40%), Gaps = 18/259 (6%) Query: 10 RIALITGAGSGIGAALARRLAAPGIALALHARGADEAARSRLADVAHACTTAGAECITLT 69 +IA ITGA GIG A+AR LA+ G +A A + +L V + Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIA-----AVDYNPEKLEKVVSSLKAEARHAEAFP 63 Query: 70 GDLGEPGIAAALVDSTATRFGGLDQLVANAGFAARQSFSELSANALASAFAT-MPGAFSA 128 D+ + + G +D LV AG LS + F+ G F+A Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 129 LAGRARPLLETSATPRIVAVSSFVAHRYRADAPFATTAAAKAALESLVRSAAAEFAAHGI 188 ++ +++ + IV V S A R A A++KAA + E A + I Sbjct: 124 SRSVSKYMMDRRSGS-IVTVGSNPAGVPRTS--MAAYASSKAAAVMFTKCLGLELAEYNI 180 Query: 189 TVNAVAPGFTRKD---------HGPSAGNAAAWAQAEQATPLGRIAEPDDVAALIAFLLS 239 N V+PG T D +G + + PL ++A+P D+A + FL+S Sbjct: 181 RCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVS 240 Query: 240 DAARQITGQVIHVDGGLTL 258 A IT + VDGG TL Sbjct: 241 GQAGHITMHNLCVDGGATL 259
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 50.3 bits (120), Expect = 7e-09 Identities = 37/148 (25%), Positives = 71/148 (47%), Gaps = 10/148 (6%) Query: 31 DFMIYSFLIPTLIATWGMTKSEAGMIATSSLISSAIGGWVAGILADRYGRVRVLQWTIAT 90 + M+ + +P + + + + T+ +++ +IG V G L+D+ G R+L + I Sbjct: 29 NEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIII 88 Query: 91 FALFTCLSGFTHSFWQLL-ATRTLQGFGFGGEWSVVTIMMAETIRSPEHRAKAVGTVQSS 149 + + HSF+ LL R +QG G ++V +++A I E+R KA G + S Sbjct: 89 NCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYI-PKENRGKAFGLIGSI 147 Query: 150 WSFGWGA--------AAILYWAFFALLP 169 + G G A ++W++ L+P Sbjct: 148 VAMGEGVGPAIGGMIAHYIHWSYLLLIP 175
>OMADHESIN#Yersinia outer membrane adhesin signature. Length = 455 Score = 29.1 bits (64), Expect = 0.040 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 6/64 (9%) Query: 212 ANGVAFRFNTELRALDVAGGKARGVHVVAVGGNHEGNGSGGARHGTTLAADAIVVALGVD 271 A G+ + + A+G+H +A+G E A G +A A +A GV+ Sbjct: 46 ALGLEYPVRPPVPGAGGLNASAKGIHSIAIGATAE------AAKGAAVAVGAGSIATGVN 99 Query: 272 SAGL 275 S + Sbjct: 100 SVAI 103
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.0 bits (67), Expect = 0.031 Identities = 27/209 (12%), Positives = 56/209 (26%), Gaps = 25/209 (11%) Query: 110 ASADAQEADAHRSSIEADAPAAAAPSIAAPTAGSPAAGWPAPGSPAATSEPAPWLVEHAK 169 + + + + P + + SP P A + K Sbjct: 1099 ETKETATVEKEEKAKVETEKTQEVPKVTSQV--SPKQEQSETVQPQAEPARENDPTVNIK 1156 Query: 170 RLTQQRDALIARAQAPAEPQASAPQPAAGATPPDWARDIVRDAERRMPPAGAP------- 222 Q + Q E ++ QP +T + +V + E P P Sbjct: 1157 EPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESS 1216 Query: 223 --------------AAARRAPDTGAAYAAKTAERTRLSSDAAAAVADAVKSRIERIVNDT 268 T + + A S++ A ++DA +N Sbjct: 1217 NKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTNAVLSDARAKAQFVALNVG 1276 Query: 269 --VMQELGELRGMMQEQFDSLMWHDRQRR 295 V Q + +L + Q++ + + + Sbjct: 1277 KAVSQHISQLEMNNEGQYNVWVSNTSMNK 1305
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 366 bits (941), Expect = e-128 Identities = 110/351 (31%), Positives = 180/351 (51%), Gaps = 6/351 (1%) Query: 1 MADESDLDKTEAATPRRREKAREEGQVARSRELASFALLAAGFYGAWLLAGPSGAHLQAM 60 M+ E KTE TP++ AR++GQVA+S+E+ S AL+ A L+ H + Sbjct: 1 MSGE----KTEQPTPKKIRDARKKGQVAKSKEVVSTALIVALSAMLMGLSDYYFEHFSKL 56 Query: 61 LRGAFTFDRATAFDTHRMLSAAGSASLEGFAALLPLLALTGVAALLAPMALGGWLISQKT 120 + +++ + + + LE F PLL + + A+ + + G+LIS + Sbjct: 57 M--LIPAEQSYLPFSQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEA 114 Query: 121 FELKFDRLNPISGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQPLG 180 + ++NPI G RIFSI+ ++ SI K +++ + I I + LL L T + Sbjct: 115 IKPDIKKINPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIE 174 Query: 181 AALPDALHLVAVCCGTTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDPHV 240 P ++ G +V++ D ++ +QY K+L+M+K+E+KRE++E EG P + Sbjct: 175 CITPLLGQILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEI 234 Query: 241 KGRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAKGVNLVAAR 300 K + RQ + I R M V ++ VVV NPTH A+ + Y GE P V K + Sbjct: 235 KSKRRQFHQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQT 294 Query: 301 IRELAAEHNVPLLEAPPLARALYHNVELEREIPGSLYSAVAEVLAWVYQLK 351 +R++A E VP+L+ PLARALY + ++ IP A AEVL W+ + Sbjct: 295 VRKIAEEEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLERQN 345
>cloacin#Cloacin signature. Length = 551 Score = 35.1 bits (80), Expect = 5e-04 Identities = 17/35 (48%), Positives = 17/35 (48%), Gaps = 1/35 (2%) Query: 32 GGGGSGNGGNAGNTGGNGSGGSDGNSGNTAVVTVG 66 GG G GNGG GN G GSG S A V G Sbjct: 58 GGSGHGNGGGNGN-SGGGSGTGGNLSAVAAPVAFG 91 Score = 34.7 bits (79), Expect = 7e-04 Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 4/49 (8%) Query: 28 GGGDGGGGSGNGGNAGNTGGNGSGGSDGNS----GNTAVVTVGAGAANV 72 GGG G G G GN+G G G S + G A+ T GAG V Sbjct: 57 GGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAV 105 Score = 32.4 bits (73), Expect = 0.004 Identities = 15/27 (55%), Positives = 20/27 (74%) Query: 33 GGGSGNGGNAGNTGGNGSGGSDGNSGN 59 GGGSG+G + G G+G+GG +GNSG Sbjct: 47 GGGSGSGIHWGGGSGHGNGGGNGNSGG 73 Score = 31.2 bits (70), Expect = 0.008 Identities = 13/36 (36%), Positives = 15/36 (41%) Query: 28 GGGDGGGGSGNGGNAGNTGGNGSGGSDGNSGNTAVV 63 G G G G G+ G SGG G GN + V Sbjct: 49 GSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAV 84
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 83.0 bits (205), Expect = 7e-22 Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 2/119 (1%) Query: 4 TILAIDDSATMRALLQATLAQAGYDVTVAPDGEAGFDMAATAPYDLVLTDQNMPRKSGLE 63 TIL DD A +R +L L++AGYDV + + + A DLV+TD MP ++ + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 64 VIAALRKLTAYADTPILVLTTEGSDAFKDAARDAGATGWIEKPIDPGVLVELVATLSEP 122 ++ ++K A D P+LV++ + + A + GA ++ KP D L+ ++ Sbjct: 65 LLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 38.8 bits (90), Expect = 2e-05 Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 9/114 (7%) Query: 182 FAMSSDHVEPYMRDILREIGKTLNDV---PNRIIVQGHTDAVPYAGGEGGYSNWELSADR 238 F + ++P + L ++ L+++ ++V G+TD + G Y N LS R Sbjct: 223 FNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRI----GSDAY-NQGLSERR 277 Query: 239 ANASRRELISGGMDEAKVLRV-LGLASTQNLNKADPLDPENRRISVIVLNRKSE 291 A + LIS G+ K+ +G ++ N D + I + +R+ E Sbjct: 278 AQSVVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVE 331
>cloacin#Cloacin signature. Length = 551 Score = 32.8 bits (74), Expect = 3e-04 Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 2/55 (3%) Query: 12 GGGHGSGHGNSGNGGH--GGHGGGHHGGSRQGGHDARGRDRHGWGWQAPADAGGG 64 GGG GSG G GH GG G GGS GG+ + +G+ A + G G Sbjct: 47 GGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAG 101 Score = 30.1 bits (67), Expect = 0.002 Identities = 24/69 (34%), Positives = 28/69 (40%), Gaps = 7/69 (10%) Query: 9 GGHGGGHGSG-HGNSGN-----GGHGGHGGGHHGGSRQGGHDARGRDRHGWGWQAPADAG 62 GG G GH +G H SGN G G GG G ++ G G G +G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWG-GGSGSGIHWGGGSG 61 Query: 63 GGQGGQRGN 71 G GG GN Sbjct: 62 HGNGGGNGN 70 Score = 27.4 bits (60), Expect = 0.019 Identities = 22/87 (25%), Positives = 30/87 (34%), Gaps = 9/87 (10%) Query: 7 ILGGHGGGHGSGHGNSGNG---GHGGHGGGHHGGSRQGGHDARGRDRHGWGWQAPADAGG 63 I GG G G + G+G + GGG G GG G ++GG Sbjct: 20 INGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGN------GNSGG 73 Query: 64 GQGGQRGNVPLSQLACAGCGALNAADA 90 G G ++ G AL+ A Sbjct: 74 GSGTGGNLSAVAAPVAFGFPALSTPGA 100
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 30.3 bits (68), Expect = 0.035 Identities = 11/36 (30%), Positives = 18/36 (50%) Query: 46 GHDHDHGHGHDHTAHGEAGHDHGHGHAGDDQHVHGA 81 G+D +G + T G G D +G G+D+ + A Sbjct: 754 GNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLIGVA 789
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 27.9 bits (62), Expect = 0.030 Identities = 11/70 (15%), Positives = 26/70 (37%) Query: 117 DAEDARHQLELRIARLDAERERLEALRATAQADQVPRLFLLQNEHALVLLNAELNWARSV 176 + ++ E+ RL+ + + + +L+ E+ V EL +S Sbjct: 215 ERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQ 274 Query: 177 VEHLKIGALR 186 +E ++ L Sbjct: 275 LEQIESEILS 284
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 60.0 bits (145), Expect = 3e-13 Identities = 27/142 (19%), Positives = 52/142 (36%), Gaps = 2/142 (1%) Query: 26 RPRQSRAQASSDALQQAFVQLLLERGYAKATIREIAAVAGVSIGTFYEYFGDKQSLAALC 85 R + AQ + + ++L ++G + ++ EIA AGV+ G Y +F DK L + Sbjct: 3 RKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI 62 Query: 86 IHRRVLALADRLRDTVQRLRGAPRAELAVALVDL--QVDTIAADAALWGALLALERQVSP 143 + + + + G P + L L+ + T L + V Sbjct: 63 WELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGE 122 Query: 144 LAAYRRHYDAYVALWRDALAQA 165 +A ++ D + Q Sbjct: 123 MAVVQQAQRNLCLESYDRIEQT 144
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 80.3 bits (198), Expect = 1e-19 Identities = 32/135 (23%), Positives = 62/135 (45%), Gaps = 1/135 (0%) Query: 2 RLLLIEDDRPIARGIQSSLEQAGFTVDMVHDGIFAEQALAQNRHELVILDLGLPGIDGMT 61 +L+ +DD I + +L +AG+ V + + + +A +LV+ D+ +P + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 LLTRFRQTNRHTPVIVLTARDELNDRIQGLNSGADDYMLKPFEPAE-LEARIRAVMRRSG 120 LL R ++ PV+V++A++ I+ GA DY+ KPF+ E + RA+ Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 121 PHSDMPRPEVSLGGV 135 S + + Sbjct: 125 RPSKLEDDSQDGMPL 139
>PF06580#Sensor histidine kinase Length = 349 Score = 31.4 bits (71), Expect = 0.008 Identities = 18/110 (16%), Positives = 38/110 (34%), Gaps = 26/110 (23%) Query: 368 LLDNALKYVPLARPDGARITVNVARASLEGSQPAAEIVVEDNGPGVPANQQADLFKRFFR 427 L++N +K+ P G +I + + + + + VE+ G N Sbjct: 263 LVENGIKHGIAQLPQGGKILL---KGTKDNGT--VTLEVENTGSLALKNT---------- 307 Query: 428 GDAQSGNGVETGAGLGLAIVHD-IIAMHGGTVSYE-DASEGGSRFVVRVP 475 + G GL V + + ++G + +G +V +P Sbjct: 308 ---------KESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLIP 348
>PF05211#Neuraminyllactose-binding hemagglutinin Length = 260 Score = 28.8 bits (64), Expect = 0.010 Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 1/49 (2%) Query: 16 KGVFAVAPIKAGERVVEYKGERISWKEALRRHPHDPSEPNHTFYFALDE 64 K F+ A K G V GE I + +R SEP F LD+ Sbjct: 106 KDDFSFAQKKEGYLAVAMNGE-IVLRPDPKRTIQKKSEPGLLFSTGLDK 153
>TYPE3OMGPROT#Type III secretion system outer membrane G protein family signature. Length = 607 Score = 28.7 bits (64), Expect = 0.040 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 5/49 (10%) Query: 307 HANRLIE---AGDADFV-AMARAMLYDPRWPWHAAAELGA-QVTAPPQY 350 A+RLI + A+ A+ R+ +++PR+ W A V+ PP+Y Sbjct: 109 VASRLIRLQESEAAELKQALQRSGIWEPRFGWRPDASNRLVYVSGPPRY 157