>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 31.3 bits (70), Expect = 0.027 Identities = 36/173 (20%), Positives = 71/173 (41%), Gaps = 19/173 (10%) Query: 121 QEESQLKERILKRKNEKIILNVNFIGEEVLGEEEASARFEKY---SQALKSNYIQYISIK 177 Q+ S+ ++ + + EK+ F+ E+ + + Y S+ K Y + Sbjct: 118 QDLSEEEKNSMNSRGEKVPFASRFVFEKKRETPKLIINIKDYAINSEQSKEVYYEIGKGI 177 Query: 178 ITTIFSQINILDFEY-----SKKEIVKRLDALYALALEEEKKQGMPKFINLDMEEFRDLE 232 I S+ LD E+ S + D L++ +E K + K I+++ ++ Sbjct: 178 SLDIISKDKSLDPEFLNLIKSLSDDSDSSDLLFSQKFKE-KLELNNKSIDINF-----IK 231 Query: 233 LTVESFMESIAK-----FDLNAGIVLQAYIPDSYEYLKKLHAFSKERVLKGLK 280 + F + + F + VL+ Y PD +EY+ KL E++ + LK Sbjct: 232 ENLTEFQHAFSLAFSYYFAPDHRTVLELYAPDMFEYMNKLEKGGFEKISESLK 284
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 1042 bits (2695), Expect = 0.0 Identities = 354/569 (62%), Positives = 442/569 (77%), Gaps = 4/569 (0%) Query: 3 KISRKEYASMYGPTTGDKVRLGDTDLIAEVEHDYTIYGEELKFGGGKTLREGMSQSN-NP 61 ++SR YA+M+GPT GDKVRL DT+L EVE D+T +GEE+KFGGGK +R+GM QS Sbjct: 4 RMSRAAYANMFGPTVGDKVRLADTELFIEVEKDFTTHGEEVKFGGGKVIRDGMGQSQVTR 63 Query: 62 SKEELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDTQDGVKNNLSVGPATEAL 121 +D +ITNALI+D+ GI KADIG+KDG+IA IGK GN D Q GV + VGP TE + Sbjct: 64 EGGAVDTVITNALILDHWGIVKADIGLKDGRIAAIGKAGNPDMQPGV--TIIVGPGTEVI 121 Query: 122 AGEGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKF 181 AGEG IVTAGG+D+HIHFI PQQI A SG+T M+GGGTGPA GT ATT TPG ++ Sbjct: 122 AGEGKIVTAGGMDSHIHFICPQQIEEALMSGLTCMLGGGTGPAHGTLATTCTPGPWHIAR 181 Query: 182 MLRAAEEYSVNLGFLAKGNASNDASLADQIEAGAIGLKIHEDWGTTPSAINHALDVADKY 241 M+ AA+ + +NL F KGNAS +L + + GA LK+HEDWGTTP+AI+ L VAD+Y Sbjct: 182 MIEAADAFPMNLAFAGKGNASLPGALVEMVLGGATSLKLHEDWGTTPAAIDCCLSVADEY 241 Query: 242 DVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTYHTEGAGGGHAPDIIKVAGEHNILPASTN 301 DVQV IHTDTLNE+G VEDT+AAI GRT+H YHTEGAGGGHAPDII++ G+ N++P+STN Sbjct: 242 DVQVMIHTDTLNESGFVEDTIAAIKGRTIHAYHTEGAGGGHAPDIIRICGQPNVIPSSTN 301 Query: 302 PTIPFTVNTEAEHMDMLMVCHHLDKNIKEDVQFADSRIRPQTIAAEDTLHDMGIFSITSS 361 PT P+TVNT AEH+DMLMVCHHL I ED+ FA+SRIR +TIAAED LHD+G FSI SS Sbjct: 302 PTRPYTVNTLAEHLDMLMVCHHLSPTIPEDIAFAESRIRKETIAAEDILHDIGAFSIISS 361 Query: 362 DSQAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISE 421 DSQAMGRVGEV RTWQTADK K++ GRLKEE GDNDNFR+KRY++KYTINPAIAHG+S Sbjct: 362 DSQAMGRVGEVAIRTWQTADKMKRQRGRLKEETGDNDNFRVKRYIAKYTINPAIAHGLSH 421 Query: 422 YVGSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPVYYREMFAH 481 +GS+EVGK ADLVLW+PAFFGVKP+M++ GG IA + MGD NASIPTPQPV+YR MF Sbjct: 422 EIGSLEVGKRADLVLWNPAFFGVKPDMVLLGGTIAAAPMGDPNASIPTPQPVHYRPMFGA 481 Query: 482 HGKAKYDANITFVSQAAYDKGIKEELGLERQVLPVKNCR-NITKKDMQFNDTTAHIEVNS 540 +G+++ ++++TFVSQA+ D G+ LG+ ++++ V+N R I K M N T HIEV+ Sbjct: 482 YGRSRTNSSVTFVSQASLDAGLAGRLGVAKELVAVQNTRGGIGKASMIHNSLTPHIEVDP 541 Query: 541 ETYHVFVDGKEVTSKPANKVSLAQLFSIF 569 ETY V DG+ +T +PA + +AQ + +F Sbjct: 542 ETYEVRADGELLTCEPATVLPMAQRYFLF 570
>CABNDNGRPT#NodO calcium binding signature. Length = 479 Score = 29.6 bits (66), Expect = 0.046 Identities = 32/155 (20%), Positives = 52/155 (33%), Gaps = 10/155 (6%) Query: 453 KDQGGNALINPNSATNTDDTHTD------DTHTDTNTTNDTSATDTPTDDKDAGDMNNTG 506 + G + + A DD + T T + ++T D A D + Sbjct: 232 NETGADYNGHYGGAPMIDDIAAIQRLYGANMTTRTGDSVYGFNSNTDRDFYTATDSSKAL 291 Query: 507 DMNNTDTGNTDTGNTDTGNTDDASNMNNGNDDM--GNANDDMSNGNDMGDDMNNANDMND 564 + D G TDT + + + N+N G+ G + + ND Sbjct: 292 IFSVWDAGGTDTFDFSGYSNNQRINLNEGSFSDVGGLKGNVSIAHGV-TIENAIGGSGND 350 Query: 565 DM-GNSNDDMGDMGDMNDDMGGDMGDMGDMGDMGN 598 + GNS D++ G ND + G G G G Sbjct: 351 ILVGNSADNILQGGAGNDVLYGGAGADTLYGGAGR 385
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 28.5 bits (63), Expect = 0.025 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Query: 123 GEELTTREKGFKAVKEFLNEQLENIDLNYPNLVVAYEPIWAIGTKKSA 170 E TT K F +K+ LN +L N + N N + EPI+A KK A Sbjct: 855 QAEATTLSKNFSDIKKELNAKLGNFN-NNNNNGLKNEPIYAKVNKKKA 901
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 61.2 bits (148), Expect = 4e-13 Identities = 61/263 (23%), Positives = 109/263 (41%), Gaps = 29/263 (11%) Query: 4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATL-AFTYLNESLEKRVRPIAQELNSPYVYE 62 ++GK I G A + I +A++ +QGA + A Y E LEK V + E + Sbjct: 6 IEGKIAFITGAA--QGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFP 63 Query: 63 LDVSKEEHFKSLYDSVKKDLGSLDFIVHSVAF--------APKEALEGSLLETSKSAFNT 114 DV + +++++G +D +V+ E E + S FN Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 115 AMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKYMAHYNVMGLAKAALESAVRYLAV 174 + +S Y + + ++ + +N A V S MA Y +KAA + L + Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPRTS-------MAAY---ASSKAAAVMFTKCLGL 173 Query: 175 DLGKHNIRVNALSAGPIRT-----LASSGIADFRMILKWNE---INAPLRKNVSLEEVGN 226 +L ++NIR N +S G T L + ++I E PL+K ++ + Sbjct: 174 ELAEYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIAD 233 Query: 227 AGMYLLSNLSSGVSGEVHFVDAG 249 A ++L+S + ++ VD G Sbjct: 234 AVLFLVSGQAGHITMHNLCVDGG 256
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 98.4 bits (245), Expect = 2e-26 Identities = 35/202 (17%), Positives = 75/202 (37%), Gaps = 18/202 (8%) Query: 94 AERKIGDWIFSSAVFFFALALIEAIIIICLLPLKEKVPYLVTFSNATQNFAIVQR--ADK 151 +K+ + A ALA + + L PLK PY++T T +I + D Sbjct: 30 RSKKLAWVV---AGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIAAKLHGDA 86 Query: 152 SIRANQALIRQLVASYVNNRE--NISNIKEQNEIAHETIRLQSAFEVWDFFEKLVSYEH- 208 +I ++A+ + +A+YV RE + +E + + + SA D + + ++ Sbjct: 87 TITYDEAVRKYFLATYVRYREGWIAAAREEY----FDAVMVMSARPEQDRWSRFYKTDNP 142 Query: 209 ----SIYTNINLTRKISIINIALISKTQANIEISAQLFNKEKLESEKRYRIIMTFEFEPI 264 +I N + I ++ + A + + + ++ + ++ + Sbjct: 143 QSPQNILAN-RTDVFVEIKRVSFLGGNVAQVYFT-KESVTGSNSTKTDAVATIKYKVDGT 200 Query: 265 EIDTKSVPLNPTGFIVTGYDVT 286 NP G+ V Y Sbjct: 201 PSKEVDRFKNPLGYQVESYRAD 222
>SECA#SecA protein signature. Length = 901 Score = 30.2 bits (68), Expect = 0.020 Identities = 37/162 (22%), Positives = 65/162 (40%), Gaps = 21/162 (12%) Query: 61 EFETLQSIYSKELEELQQTITTDKMQQQLLEQDNIDFELQSALQND-LKDLEHLSDDLQN 119 + + + E++ + + Q LE+ LQ L+ND DL + Sbjct: 668 DVSDVSETINSIREDVFKATIDAYIPPQSLEEMWDIPGLQERLKNDFDLDLPIAEWLDKE 727 Query: 120 DKLNLE-IKEFINKQDDKNYQNKEQLNTETKENIRENSKN-----------SHLIPITNL 167 +L+ E ++E I Q + YQ KE++ E +R K HL + L Sbjct: 728 PELHEETLRERILAQSIEVYQRKEEVVGA--EMMRHFEKGVMLQTLDSLWKEHLAAMDYL 785 Query: 168 KNFLHNRRENFKVTQQDLPSEKQKKYSDKLFKKELLEYAKHN 209 + +H R Q+D P ++ K+ S +F +LE K+ Sbjct: 786 RQGIHLR----GYAQKD-PKQEYKRESFSMF-AAMLESLKYE 821
>cloacin#Cloacin signature. Length = 551 Score = 38.5 bits (89), Expect = 1e-04 Identities = 24/94 (25%), Positives = 35/94 (37%), Gaps = 20/94 (21%) Query: 192 SGSNGANGNNSNHNAVGSGIDTDGVLGVDGVNGSSSSSGGSVGGYENNFTNHGSTNNNTG 251 SG +G N H+ G+ +NG + G G ++ + S NN G Sbjct: 2 SGGDGRGHNTGAHSTSGN------------INGGPTGLGVGGGA--SDGSGWSSENNPWG 47 Query: 252 GYDNFNNGSSSGGGLGNGGLFPIPFGNGDTNNSN 285 G G G GNGG GNG++ + Sbjct: 48 GGSGSGIHWGGGSGHGNGG------GNGNSGGGS 75 Score = 33.1 bits (75), Expect = 0.004 Identities = 31/111 (27%), Positives = 42/111 (37%), Gaps = 21/111 (18%) Query: 168 INGKDGANGSNGYGINGNDGINGSSGSNGANGNNSNHNAVGSGIDTDGVLGVDGVNGSSS 227 ++G DG G N + + ING G G S+ GSG ++ + G S Sbjct: 1 MSGGDG-RGHNTGAHSTSGNINGGPTGLGVGGGASD----GSGWSSE-----NNPWGGGS 50 Query: 228 SSGGSVGGYENNFTNHGSTNNNTGGYDNFNNGSSSGGGLGNGGL-FPIPFG 277 SG GG G N G N+G SG G + P+ FG Sbjct: 51 GSGIHWGG------GSGHGNGGGNG----NSGGGSGTGGNLSAVAAPVAFG 91
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 44.8 bits (106), Expect = 3e-07 Identities = 55/271 (20%), Positives = 104/271 (38%), Gaps = 16/271 (5%) Query: 28 LILSGSLTPHQSFQLGIAVLMGYVFGSFLIQFLSPLMSLESIAKISFGLIALSFLICYFD 87 L+ S +T H L + LM + L LS + +S A+ + I Sbjct: 35 LVHSNDVTAHYGILLALYALMQFACAPVLGA-LSDRFGRRPVLLVSLAGAAVDYAI--MA 91 Query: 88 SIPFFW-LWIWRFIAGVASSALMILVAPLSLPYVKENKRALVGGFIFSAVGIGSVFSGFV 146 + PF W L+I R +AG+ + A + ++RA GF+ + G G V + Sbjct: 92 TAPFLWVLYIGRIVAGI-TGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVL 150 Query: 147 LPWISSYNIKWAWIFLGGSCLIAFILSLIGLKN-HSLKKKSVKKEESAFKIPFHL----- 200 + ++ + + F+ L H +++ +++E F Sbjct: 151 GGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMT 210 Query: 201 ---WLLLISCALNAIGFLPHTLFWVDYLIRHLNISPTIAGTSWAFFG-FGATLGSLISGP 256 L+ + + +G +P L WV + + T G S A FG + ++I+GP Sbjct: 211 VVAALMAVFFIMQLVGQVPAAL-WVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGP 269 Query: 257 MAQKLGAKNANIFILVLKSIACFLPIFFHQI 287 +A +LG + A + ++ L F + Sbjct: 270 VAARLGERRALMLGMIADGTGYILLAFATRG 300
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.3 bits (65), Expect = 0.011 Identities = 9/18 (50%), Positives = 11/18 (61%) Query: 8 LILSGPSGAGKSTLTKYL 25 ++L G G GKSTL L Sbjct: 599 VVLEGTGGIGKSTLINTL 616
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 70.1 bits (171), Expect = 9e-15 Identities = 43/216 (19%), Positives = 78/216 (36%), Gaps = 13/216 (6%) Query: 162 LPTLNDQEEKEEVKKEVKETP-QEEKPKDDEIQEGETLKDKEVSKELETQE----ELEIP 216 P+ + E K+E K E+ + Q E K+ + + + TQ + Sbjct: 1032 TPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSE 1091 Query: 217 KEETQEQAKEQEPIKEKMQEIKEEKQGKTQDSPSAQELEAMQELVKEIQENSNGQEDK-- 274 +ETQ ++ EK ++ K E + + ++ QE + +Q + + Sbjct: 1092 TKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDP 1151 Query: 275 ----KETQENAETPQDVETPQDVETPQDVETPQEKTQDVETPQESAETPQEKETQESAET 330 KE Q T D E P ET +VE P ++ V T E P E T + + Sbjct: 1152 TVNIKEPQSQTNTTADTEQPAK-ETSSNVEQPVTESTTVNTGNSVVENP-ENTTPATTQP 1209 Query: 331 QESAETQESAETQESAETQESAETQESAETPQKETQ 366 ++E+ + + + E A T + Sbjct: 1210 TVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRS 1245 Score = 61.2 bits (148), Expect = 5e-12 Identities = 47/223 (21%), Positives = 75/223 (33%), Gaps = 10/223 (4%) Query: 153 EEPNNEEQLLPTLNDQEEKEEVKKEVKETPQEEKPKDDEIQEGETLKDKEVSKELETQEE 212 E N ++ T ++E +E K VK Q + + ET +KE T E+ Sbjct: 1051 VEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKET--QTTETKETATVEK 1108 Query: 213 LEIPKEETQEQAKEQEPIKEKMQEIKEEKQGKTQDSPSAQELEAMQELVKEIQENSNGQE 272 E K ET++ + P K+E+ Q +KE Q +N Sbjct: 1109 EEKAKVETEKTQE--VPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTA 1166 Query: 273 D----KKETQENAETPQDVETPQDVETPQDVETPQEKTQDVETPQESAETPQEKETQESA 328 D KET N E P T + VE P+ T P ++E+ K Sbjct: 1167 DTEQPAKETSSNVEQPVTESTTVN-TGNSVVENPENTTPATTQPTVNSES-SNKPKNRHR 1224 Query: 329 ETQESAETQESAETQESAETQESAETQESAETPQKETQEKKAQ 371 + S T S + A ++ + +A+ Sbjct: 1225 RSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTNAVLSDARAK 1267 Score = 60.5 bits (146), Expect = 1e-11 Identities = 49/273 (17%), Positives = 86/273 (31%), Gaps = 19/273 (6%) Query: 173 EVKKEVKETPQEEKPKDDEIQEGETLKDKEV---SKELETQEELEIPKEETQEQAKEQEP 229 E + + +T P + + + E E ET E E Sbjct: 986 EKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSK 1045 Query: 230 IKEKMQEIKEEKQGKTQDSPSAQELEAMQELVKEIQEN----SNGQEDKKETQENAETP- 284 + K E E+ +T EA + Q N S + + +T E ET Sbjct: 1046 QESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETAT 1105 Query: 285 QDVETPQDVETPQDVETPQEKTQDVETPQESAETPQEKETQESAETQESAETQESAETQE 344 + E VET + E P+ T Q S + Q + Q AE + + + + Sbjct: 1106 VEKEEKAKVETEKTQEVPK------VTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQ 1159 Query: 345 SAETQESAETQESAETPQ--KETQEKKAQEDHYESIEDIPEPVMAQAMGEALPFLNESVA 402 S + Q + ET ++ + + S+ + PE P +N + Sbjct: 1160 SQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPA---TTQPTVNSESS 1216 Query: 403 KIPNNENDTETPKESVIKTPQEKEESDKASSPL 435 P N + P +D+++ L Sbjct: 1217 NKPKNRHRRSVRSVPHNVEPATTSSNDRSTVAL 1249 Score = 57.4 bits (138), Expect = 8e-11 Identities = 46/265 (17%), Positives = 93/265 (35%), Gaps = 23/265 (8%) Query: 210 QEELEIPKEETQEQAKEQEPIKEKMQEIKEEKQGKTQDSPSAQELEAMQELVKEIQENSN 269 E+ + T E+ + ++P A + Sbjct: 985 VEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPA----TPSETTETV 1040 Query: 270 GQEDKKETQENAETPQDVETPQDVETPQDVETPQEKTQDVETPQESAETPQEKETQESAE 329 + K+E++ + QD T Q+ E +E +V+ ++ E Q + + Sbjct: 1041 AENSKQESKTVEKNEQDATET----TAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQ 1096 Query: 330 TQESAETQ----------ESAETQESAE-TQESAETQESAETPQKETQEKKAQEDHYESI 378 T E+ ET E+ +TQE + T + + QE +ET Q + E + D +I Sbjct: 1097 TTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQA-EPARENDPTVNI 1155 Query: 379 EDIPEPVMAQAMGEALPFLNESVAKIPNNENDTETPKESVIKTPQEKEESDKASSPLELR 438 ++ A E S + P E+ T SV++ P+ + + Sbjct: 1156 KEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQP---TVN 1212 Query: 439 LNLQDLLKSLNQESLKSLLENKTLS 463 + K+ ++ S++S+ N + Sbjct: 1213 SESSNKPKNRHRRSVRSVPHNVEPA 1237
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 191 bits (486), Expect = 3e-63 Identities = 51/172 (29%), Positives = 84/172 (48%), Gaps = 18/172 (10%) Query: 56 GERPLFADRRAMKPNDLITIIVSEKASANYSSS----KDYKSASGGNSTPPRLTYNGLDE 111 G +PLF DRR D +TI++ E SA+ SSS +D K+ G ++ P L GL Sbjct: 61 GYQPLFEDRRPRNIGDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVPRYL--QGLFG 118 Query: 112 RKKQEAQYLDDKNNYNFTKSSNNTNFKGGGSQKKSEDLEIVLSARIIKVLENGNYFIYGN 171 + + + S F G G S L+ + +VL NGN + G Sbjct: 119 NARADVEA------------SGGNTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGE 166 Query: 172 KEVLVDGEKQILKVSGVIRPYDIERNNTIQSKFLADAKIEYTNLGHLSDSNK 223 K++ ++ + ++ SGV+ P I +NT+ S +ADA+IEY G+++++ Sbjct: 167 KQIAINQGTEFIRFSGVVNPRTISGSNTVPSTQVADARIEYVGNGYINEAQN 218
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 28.0 bits (62), Expect = 0.016 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 3/49 (6%) Query: 102 RGETILKALEYIAFE---EFQLNSLHLEVMENNFKAIAFYEKNHYELEG 147 R + + AL + A E E L LE + N A FY K+H+ + Sbjct: 102 RKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFIIGA 150
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 27.5 bits (61), Expect = 0.033 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 8/59 (13%) Query: 32 FVIVAWLFRF--KSIAFSILITLLVILVDIWVYSDVRQFLL-DTASSPILLLIALLIKW 87 V VA ++A +L +LV L I D+ + LL D + P LL LL Sbjct: 121 SVAVAMTLAPGWGTLAALLLTWVLVALTFI----DLDKMLLPDQLTLP-LLWGGLLFNL 174
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 26.6 bits (59), Expect = 0.021 Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 9/68 (13%) Query: 27 NLADKRYDSLGLIGAGVLCCVLSGAIGIVGII--FVAIGIFLS-------FSNINLVKLV 77 + A L+ LC L ++ I V G +S IN ++ Sbjct: 69 SQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPDIKKINPIEGA 128 Query: 78 EKLFKKQS 85 +++F +S Sbjct: 129 KRIFSIKS 136
>PF07201#Hypersensitivity response secretion protein HrpJ Length = 293 Score = 29.8 bits (67), Expect = 0.019 Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 15/76 (19%) Query: 277 APENSKEKLIEELIANSQLIANEEEREKKLLTEKEKQ--------EAELAKY--KLKDLE 326 S + EE+ E +E L K E ++ +Y K+ +LE Sbjct: 44 GTLQSIADMAEEVTF-----VFSERKELSLDKRKLSDSQARVSDVEEQVNQYLSKVPELE 98 Query: 327 NQKKLKALEAELKKKN 342 ++ + L + L Sbjct: 99 QKQNVSELLSLLSNSP 114
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 38.9 bits (90), Expect = 2e-04 Identities = 40/247 (16%), Positives = 89/247 (36%), Gaps = 24/247 (9%) Query: 709 TPEAKKLLEEEAKESVKAYLDCVSQAKTETEKKECEKLLTPEARKKLEEAKKSVKAYLDC 768 P ++ + + ++KT + ++ T + R+ +EAK +VKA Sbjct: 1023 APVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQT 1082 Query: 769 VSQAKTETEKKECEKLLTPEAKKLLEQQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAK 828 A++ +E KE + T E + +++ AK E EK + V KV ++ Sbjct: 1083 NEVAQSGSETKETQTTETKETATVEKEE------KAKVETEKTQEV--------PKVTSQ 1128 Query: 829 ESLKVYLDCVSQAKTEAEKKECEKLLTPEAKKLLEE--AKESLKAYKDCVSRARNEKEKQ 886 S K Q ++E + + E + ++E ++ + A + ++ + +Q Sbjct: 1129 VSPK-------QEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQ 1181 Query: 887 ECEKLLTPEAKKLLEQQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESLKVYLDCVS 946 + T + + + A T+ + PK+ ++ + V S Sbjct: 1182 PVTESTTVNTGNSVVENPENTT-PATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTS 1240 Query: 947 QAKTEAE 953 Sbjct: 1241 SNDRSTV 1247 Score = 38.1 bits (88), Expect = 5e-04 Identities = 32/217 (14%), Positives = 65/217 (29%), Gaps = 14/217 (6%) Query: 1000 TPEARKLLEQEVKKSVKAYLDCVSQAKTEAEKKECEKLLTPEARKLLEQQALDCLKNAKT 1059 TP E K ++ Q TE + E ++ Q + ++ Sbjct: 1032 TPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSE 1091 Query: 1060 EAEKKRCVKDLPKDLQKKVLAKESVKAYLDCVSRARNEKEKQECEKLLTPEAKKLLEEAK 1119 E + ++K+ AK + + KQE + + P+A+ E Sbjct: 1092 TKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDP 1151 Query: 1120 ESLKAYKDCVSQARNEEERKACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQE 1179 + + +++ A + E +EQ V +S + E Sbjct: 1152 TVN------IKEPQSQTNTTADTEQPAKETSSNVEQPVTES--------TTVNTGNSVVE 1197 Query: 1180 CEKLLTPEARKFLAKQALSCLEKARNEEERKACLKNI 1216 + TP + S K R+ ++ N+ Sbjct: 1198 NPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNV 1234 Score = 37.4 bits (86), Expect = 8e-04 Identities = 30/187 (16%), Positives = 67/187 (35%), Gaps = 4/187 (2%) Query: 625 KARNEEERKACEKLLTPEAKKLLERQALDCLKNAKTEAE--KKRCVKDLPKDLQSDILAK 682 + NEE + E + P A +N+K E++ +K Q+ +AK Sbjct: 1011 PSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAK 1070 Query: 683 ESVKAYRDCVSQARTEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTETEKKE 742 E+ + E ++ T E K+ E +E K + + T + Sbjct: 1071 EAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVS 1130 Query: 743 CEKLLTPEARKKLEEAKKSVKAYL--DCVSQAKTETEKKECEKLLTPEAKKLLEQQALDC 800 ++ + + + E A+++ + SQ T + ++ K + ++ + + Sbjct: 1131 PKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVN 1190 Query: 801 LKNAKTE 807 N+ E Sbjct: 1191 TGNSVVE 1197 Score = 34.7 bits (79), Expect = 0.005 Identities = 38/242 (15%), Positives = 91/242 (37%), Gaps = 6/242 (2%) Query: 909 KNAKTEAEKKRCVKDLP-KDLQKKVLAKESLKVYLDCVSQAKTEAEKKECEKLLTPEAKK 967 + + E+ V + P ++ + V + ++KT + ++ T + ++ Sbjct: 1008 PSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNRE 1067 Query: 968 LLEEAKESLKAYKDCLSQARNEEERKACEKLLTPEARKLLEQEVKKSVKAYLDCVSQAKT 1027 + +EAK ++KA A++ E K + T E + ++E K V + + Sbjct: 1068 VAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTS 1127 Query: 1028 EAE-KKECEKLLTPEARKLLEQQALDCLKNAK----TEAEKKRCVKDLPKDLQKKVLAKE 1082 + K+E + + P+A E +K + T A+ ++ K+ ++++ V Sbjct: 1128 QVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTEST 1187 Query: 1083 SVKAYLDCVSRARNEKEKQECEKLLTPEAKKLLEEAKESLKAYKDCVSQARNEEERKACE 1142 +V V N + + + K + S+++ V A ++ Sbjct: 1188 TVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTV 1247 Query: 1143 KL 1144 L Sbjct: 1248 AL 1249
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 868 bits (2244), Expect = 0.0 Identities = 511/522 (97%), Positives = 513/522 (98%) Query: 1 MEQAFFKKIVGCFCLGYLFLSSVIEAAAPDIKNFNRGRVKVVNKKIAYLGDEKPITIWTS 60 M QAFFKKIVGCFCLGYLFLSS IEA A DIKNFNRGRVKVVNKKIAYLGDEKPITIWTS Sbjct: 1 MGQAFFKKIVGCFCLGYLFLSSAIEAVALDIKNFNRGRVKVVNKKIAYLGDEKPITIWTS 60 Query: 61 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR 120 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR Sbjct: 61 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR 120 Query: 121 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL 180 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL Sbjct: 121 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL 180 Query: 181 ENLTNAMSNPQNLSNNKNLSEFIKQQRENELDQMERLEDMQEQVQANALKQIEELNKKQA 240 ENLTNAMSNPQNLSNNKNLSE IKQQRENELDQMERLEDMQEQ QANALKQIEELNKKQA Sbjct: 181 ENLTNAMSNPQNLSNNKNLSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA 240 Query: 241 EETVKQRAKDKINIKTDKPQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD 300 EE V+QRAKDKI+IKTDK QKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD Sbjct: 241 EEAVRQRAKDKISIKTDKSQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD 300 Query: 301 NFASAYLTVKLEYPQRHEVSSVIEGELKKREEAKRQRELIKQENLNTTAYINRVMMASNE 360 NFASAYLTVKLEYPQRHEVSSVIE ELKKREEAKRQRELIKQENLNTTAYINRVMMASNE Sbjct: 301 NFASAYLTVKLEYPQRHEVSSVIEEELKKREEAKRQRELIKQENLNTTAYINRVMMASNE 360 Query: 361 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF 420 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF Sbjct: 361 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF 420 Query: 421 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK 480 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK Sbjct: 421 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK 480 Query: 481 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK 522 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK Sbjct: 481 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK 522
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 119 bits (301), Expect = 2e-35 Identities = 44/205 (21%), Positives = 74/205 (36%), Gaps = 10/205 (4%) Query: 27 KLNKANRTFKRAFYL---SMALNIAAVTSIVMMMPLKKTDIFVYGIDRYTGEFKIVKRSD 83 KL A R+ K A+ + + AL A V ++ + PLK + +V +DR TGE I + Sbjct: 24 KLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIAAKLH 83 Query: 84 A-RQIVNSEAVVDSATSKFVSLLFGYSKNSLRDRKDQLMQYCDVSFQTQAMRMFNENIRQ 142 I EAV + +V G+ + + D +M Q + R + + Q Sbjct: 84 GDATITYDEAVRKYFLATYVRYREGWIAAAREEYFDAVMVMSARPEQDRWSRFYKTDNPQ 143 Query: 143 FVDKVRA-EAIISSNIRREKVKNSPLTRLTFFITIKITPDTMENYEYITKKEVTIYYDFA 201 + A + I + +F +T T TI Y Sbjct: 144 SPQNILANRTDVFVEI-KRVSFLGGNVAQVYFTKESVTGSNS----TKTDAVATIKYKVD 198 Query: 202 SGNSSQENLIINPFGFKVFDIQITD 226 S + + NP G++V + Sbjct: 199 GTPSKEVDRFKNPLGYQVESYRADV 223
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 32.4 bits (73), Expect = 0.002 Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 16/119 (13%) Query: 24 AINTALLPSEYKKLVALGFKKIKTLYQRHDDKEVTEEEKKFATNALREKLRNDRARAEQI 83 A+N AL+ +Y++ + K K + D KE+ E++K EK + + +A++ Sbjct: 112 AVNFALMTRDYQEFL----KTKKLIVDAPDPKELEEQKKAL------EKEKEAKEQAQKA 161 Query: 84 QKNIEAFEKKNNSSIQKKATKHKGLQELNETNANPLNGNPNSNSSTETKSNKDDNFDEM 142 QK+ K +++A L+ L +NP N + N N S K +++ D+M Sbjct: 162 QKD------KREKRKEERAKNRANLENLTNAMSNPQNLSNNKNLSELIKQQRENELDQM 214
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 32.9 bits (75), Expect = 0.008 Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 18/88 (20%) Query: 19 EVQKRQFQKIEELKADMQKGVNPFFKVLFDGGNRLFGFPETFIYSSI-------FILFVT 71 + K K+ EL+ +G+ +D F+ SI F + Sbjct: 301 DTAKAIKAKLAELQPFFPQGMK--VLYPYD--------TTPFVQLSIHEVVKTLFEAIML 350 Query: 72 IVLSVILF-QAYEPVLIVAIVIVLVALG 98 + L + LF Q LI I + +V LG Sbjct: 351 VFLVMYLFLQNMRATLIPTIAVPVVLLG 378
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 123 bits (310), Expect = 2e-36 Identities = 78/250 (31%), Positives = 112/250 (44%), Gaps = 11/250 (4%) Query: 5 GKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEEKGYKAAVIKFDA 64 GK ITGA++GIG +A+TLAS G + N E + + + L+ + A D Sbjct: 8 GKIAFITGAAQGIGEAVARTLASQGAHI-AAVDYNPEKLEKVVSSLKAEARHAEAFPADV 66 Query: 65 ASENDFVEAIQTIVQSDGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCRE 124 E I + G + LVN AGV+R L + E++ N T F R Sbjct: 67 RDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRS 126 Query: 125 ALKVMSKSRFGSVVNIASIIGERGNMGQTNYSASKGGVIAMSKSFAYEGALRNIRFNSVT 184 K M R GS+V + S Y++SK + +K E A NIR N V+ Sbjct: 127 VSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVS 186 Query: 185 PGFIETDMNANL--KDELKADYVK--------NIPLNRLGAAKEVAEAVAFLLSDHSSYI 234 PG ETDM +L + +K IPL +L ++A+AV FL+S + +I Sbjct: 187 PGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHI 246 Query: 235 TGETLKVNGG 244 T L V+GG Sbjct: 247 TMHNLCVDGG 256
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 276 bits (708), Expect = 2e-96 Identities = 113/245 (46%), Positives = 162/245 (66%), Gaps = 2/245 (0%) Query: 1 MRFFIFLTLICPLICPLMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLI 60 MR + + + L A + LP + S P + + + +T L P+++ Sbjct: 1 MRRLLSVAPVL-LWLITPLAFAQLPGIT-SQPLPGGGQSWSLPVQTLVFITSLTFIPAIL 58 Query: 61 LVMTSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMD 120 L+MTSFTR+I+VF LR ALGT PP Q+L+ L+L LTFFIM P + K Y +P+ + Sbjct: 59 LMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSE 118 Query: 121 KKISYTEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKTPDEVSLSVLIPAFMISE 180 +KIS EA EK A P +EFML+ TRE DL LF R+ N + P+ V + +L+PA++ SE Sbjct: 119 EKISMQEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVTSE 178 Query: 181 LKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTEN 240 LKTAFQIGF +++PFL+ID+VI+S+LMA+GMMM+PP I+LPFK+++F+LVDG+ LL + Sbjct: 179 LKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGS 238 Query: 241 LVASF 245 L SF Sbjct: 239 LAQSF 243
>PF05211#Neuraminyllactose-binding hemagglutinin Length = 260 Score = 407 bits (1047), Expect = e-147 Identities = 254/260 (97%), Positives = 256/260 (98%) Query: 1 MKANNHFKDFAWKKCLLGASVVALLVGCSPHIIETNEVTLKLNYHPASEKVQALDEKILL 60 MKANNHFKDFAWKKCLLGASVVALLVGCSPHIIETNEV LKLNYHPASEKVQALDEKILL Sbjct: 1 MKANNHFKDFAWKKCLLGASVVALLVGCSPHIIETNEVALKLNYHPASEKVQALDEKILL 60 Query: 61 LRPAFQYSDNIAKEYENKFKNQTALKVEQILQNQGYKVINVDSSDKDDFSFAQKKEGYLA 120 LRPAFQYSDNIAKEYENKFKNQT LKVEQILQNQGYKVINVDSSDKDDFSFAQKKEGYLA Sbjct: 61 LRPAFQYSDNIAKEYENKFKNQTTLKVEQILQNQGYKVINVDSSDKDDFSFAQKKEGYLA 120 Query: 121 VAMNGEIVLRPDPKRTIQKKSEPGLLFSTGLDKMEGVLISAGFIKVTILEPMSGESLDSF 180 VAMNGEIVLRPDPKRTIQKKSEPGLLFSTGLDKMEGVLI AGF+KVTILEPMSGESLDSF Sbjct: 121 VAMNGEIVLRPDPKRTIQKKSEPGLLFSTGLDKMEGVLIPAGFVKVTILEPMSGESLDSF 180 Query: 181 TMDLSELDIQEKFLKTTHSSHSGGLVSTMVKGTDNSNDAIKSALNKIFASIMQEIDKKLT 240 TMDLSELDIQEKFLKTTHSSHSGGLVSTMVKGTDNSNDAIKSALNKIFA+IMQEIDKKLT Sbjct: 181 TMDLSELDIQEKFLKTTHSSHSGGLVSTMVKGTDNSNDAIKSALNKIFANIMQEIDKKLT 240 Query: 241 QKNLESYQKDAKELKNKRNR 260 QKNLESYQKDAKELK KRNR Sbjct: 241 QKNLESYQKDAKELKGKRNR 260
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 42.3 bits (99), Expect = 7e-06 Identities = 13/49 (26%), Positives = 27/49 (55%) Query: 669 SISGSKLESSNVDLSRSLTNLIVVQRGFQANSKAVTTSDQILNTLLNLK 717 +S + S V+L NL Q+ + AN++ + T++ I + L+N++ Sbjct: 498 QLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINIR 546 Score = 39.2 bits (91), Expect = 5e-05 Identities = 11/35 (31%), Positives = 20/35 (57%) Query: 4 SLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSR 38 + + ++G+ A Q AL+ SNNI++ N G+ Sbjct: 3 LINNAMSGLNAAQAALNTASNNISSYNVAGYTRQT 37
>OMS28PORIN#OMS28 porin signature. Length = 257 Score = 29.8 bits (66), Expect = 0.020 Identities = 13/37 (35%), Positives = 25/37 (67%) Query: 309 EEDLLVSKKRLDKIYRLKQRVLGTLGGINPNFKKEIL 345 +E L+ S++ LD+ + Q+VL + G+NP+ K ++L Sbjct: 188 KETLMASERALDETVQEAQKVLNMVNGLNPSNKDQVL 224
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 89.0 bits (220), Expect = 5e-23 Identities = 57/245 (23%), Positives = 107/245 (43%), Gaps = 10/245 (4%) Query: 1 MGEKKESQKVAVITGASSGIGLECALMLLDQGYKVYALSRHATLCVALNHALC------E 54 M K K+A ITGA+ GIG A L QG + A+ + + +L E Sbjct: 1 MNAKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAE 60 Query: 55 SIDVDVSDSDALKEAFLNISAKEDHCDVLINSAGYGVFGSVEDTPIDEVKKQFGVNFFAL 114 + DV DS A+ E I + D+L+N AG G + +E + F VN + Sbjct: 61 AFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGV 120 Query: 115 CEVVQFCLPLLKNKPHSKIFNLSSIAGRVSMLFLGHYSASKHALEAYSDALRLELKPFNV 174 + + ++ I + S V + Y++SK A ++ L LEL +N+ Sbjct: 121 FNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNI 180 Query: 175 QVCLIEPGPVKSNWEKTAFENDERKDSLYALEVNAAKSFYSGV-YQKALSPKAVAQKIVF 233 + ++ PG +++ + + + ++ + + + ++F +G+ +K P +A ++F Sbjct: 181 RCNIVSPGSTETDMQWSLWADENGAEQVIK---GSLETFKTGIPLKKLAKPSDIADAVLF 237 Query: 234 LAMSQ 238 L Q Sbjct: 238 LVSGQ 242
>SECA#SecA protein signature. Length = 901 Score = 26.8 bits (59), Expect = 0.026 Identities = 12/69 (17%), Positives = 32/69 (46%), Gaps = 12/69 (17%) Query: 4 SPTKKDCTQYSEKQLFNLINQLERKIKKMQNDRASFKEKMAKELEKRDQNFKDKIDALNE 63 S + + +++ N+IN +E +++K+ ++ EL+ + F+ +++ Sbjct: 12 SRNDRTLRRM--RKVVNIINAMEPEMEKLSDE----------ELKGKTAEFRARLEKGEV 59 Query: 64 LLQKISQVF 72 L I + F Sbjct: 60 LENLIPEAF 68
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 40.9 bits (96), Expect = 7e-06 Identities = 39/181 (21%), Positives = 70/181 (38%), Gaps = 13/181 (7%) Query: 211 AASIATLSNDERELGVACVDIGGETCNLTIYSGNSIRYNKYLPIGSHHLSTDLSSMLNTP 270 AA+I G VDIGG T + + S N + Y+ + IG + + + Sbjct: 146 AAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNGVVYSSSVRIGGDRFDEAIINYVRRN 205 Query: 271 F------PYAEEVKIKYGDLSFESGEETASQSVQIPTTGSDGNESHVVPLSKIQNIMRDR 324 + AE +K + G S G+E V+ + ++I +++ Sbjct: 206 YGSLIGEATAERIKHEIG--SAYPGDEVREIEVRGRNLAEGVPRGFTLNSNEILEALQEP 263 Query: 325 ALETFQIIHRSIQDSGLE---EHLGGGVVLTGGMALMKGIKELAKAHFTNYPVRLAA-PM 380 + +++ E + G+VLTGG AL++ + L T PV +A P+ Sbjct: 264 LTGIVSAVMVALEQCPPELASDISERGMVLTGGGALLRNLDRLL-MEETGIPVVVAEDPL 322 Query: 381 E 381 Sbjct: 323 T 323
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 32.7 bits (74), Expect = 0.002 Identities = 25/145 (17%), Positives = 48/145 (33%) Query: 27 GATKKELKQLQVNSKNFSNILTKIHSQVEANTQAQEGLRSVYEGQANKIKDLNNAILSQE 86 K + ++ +A EG + + KIK L + E Sbjct: 200 EGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALE 259 Query: 87 ESLRALKALQEVQANTLKQQSQTLEDLRNEIHANQQAIQQLDKQNKEMSELLTKLSQDLV 146 L+ E N S ++ L E A + L+ Q++ ++ L +DL Sbjct: 260 ARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLD 319 Query: 147 SQIALIQKALKEQEEKAEKPLKSNA 171 + ++ E ++ E+ S A Sbjct: 320 ASREAKKQLEAEHQKLEEQNKISEA 344
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 140 bits (355), Expect = 4e-43 Identities = 46/168 (27%), Positives = 71/168 (42%), Gaps = 22/168 (13%) Query: 22 NMDKEAVAGDVSAKAVQSAPVSTETVQEKQEPKQEPAPVVEKKPAVESGTIIASIYFDFD 81 D ++ VS + Q P PAP V+ K T+ + + F+F+ Sbjct: 177 RPDNGMLSLGVSYRFGQGEAAPVV------APAPAPAPEVQTK----HFTLKSDVLFNFN 226 Query: 82 KYEIKESDQETLDEIVQKAKE---NHMQVLLEGNTDEFGSSEYNQALGVKRTLSVKNALI 138 K +K Q LD++ + V++ G TD GS YNQ L +R SV + LI Sbjct: 227 KATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSVVDYLI 286 Query: 139 IKGVEKDMIKTISFGETKPKCTQ-----KTR----ECYRENRRVDVKL 177 KG+ D I GE+ P K R +C +RRV++++ Sbjct: 287 SKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEV 334
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 90.3 bits (224), Expect = 3e-23 Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 2/118 (1%) Query: 1 MQK-KIFLLEDDYLLSESVKEFLEHLGYEVFCAFNGKEAYERLSVERFNLLLLDVQVPEM 59 M I + +DD + + + L GY+V N + ++ +L++ DV +P+ Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 60 NSLELFRRIKNDFLISTPVIFITALQDNATLKNAFNLGASDYLKKPFDLDELEARIKR 117 N+ +L RIK PV+ ++A T A GA DYL KPFDL EL I R Sbjct: 61 NAFDLLPRIKKA-RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 30.2 bits (68), Expect = 0.012 Identities = 7/45 (15%), Positives = 16/45 (35%) Query: 122 GSHGEYFRNRASTKNIQFPYSHYLAHICLGILYTRSASSGIDETE 166 GSH Y+ + Q + I + Y+ + ++ + Sbjct: 547 GSHQTYWGTSNVDEQFQAGLNTAFEDINWTLSYSLTKNAWQKGRD 591
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 220 bits (562), Expect = 7e-77 Identities = 64/148 (43%), Positives = 95/148 (64%) Query: 4 IGIYPGTFDPVTNGHIDIIHRSSELFEKLIVAVAYSCAKNPMFSLKERLEMVQLATKNFK 63 IYPG+FDP+T GH+DII R LF+++ VAV + K PMFS++ERLE + A + Sbjct: 2 NAIYPGSFDPITFGHLDIIERGCRLFDQVYVAVLRNPNKQPMFSVQERLEQIAKAIAHLP 61 Query: 64 NVECVAFEGLLANLAKEYHCKVLVRGLRVVSDFEYELQMGYANKSLNHELETLYFMPTLQ 123 N + +FEGL N A++ ++RGLRV+SDFE ELQM NK+L +LET++ + + Sbjct: 62 NAQVDSFEGLTVNYARQRQAGAILRGLRVLSDFELELQMANTNKTLASDLETVFLTTSTE 121 Query: 124 NAFISSSIVRSIIAHKGDASHLVPKEIH 151 +F+SSS+V+ + G+ H VP + Sbjct: 122 YSFLSSSLVKEVARFGGNVEHFVPSHVA 149
>ARGDEIMINASE#Bacterial arginine deiminase signature. Length = 409 Score = 25.9 bits (57), Expect = 0.044 Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 8/60 (13%) Query: 7 VHIHNLVFETILGILEFERLKPQKISVNLDLFYTQLPN-----KAYLDYIKIQELIQKMM 61 +I +L+ E ++ + L+ + IS + + K Y + I +I KM+ Sbjct: 70 EYIEDLISEVLVSSVA---LENKFISQFILEAEIKTDFTINLLKDYFSSLTIDNMISKMI 126
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 35.2 bits (81), Expect = 5e-04 Identities = 9/51 (17%), Positives = 24/51 (47%), Gaps = 4/51 (7%) Query: 125 TVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALEKHKKVVLV 175 +Y + ++ Q+D ++ G +G GK + A+ ++ ++ V + Sbjct: 148 EIYRVLARLMQTDLT----LMITGESGTGKELVARALHDYGKRRNGPFVAI 194
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 33.5 bits (76), Expect = 0.004 Identities = 72/270 (26%), Positives = 117/270 (43%), Gaps = 33/270 (12%) Query: 545 HLEPGFNPKTL--IESVCSKVLKEFEKVEILDKYGVYQLFKDYYNEVLQDDWFLLSFNDF 602 HLE GFN + + + + + F + + DK L N++++D LS N Sbjct: 527 HLEVGFNKVAIFNLPDLNNLAITSFVRRNLEDKLTTKGLSPQEANKLIKD---FLSSNKE 583 Query: 603 LSAKELRELNPLKDKNKKANYLEEPDFVIQKTYYKSDLIPKNLIKQRFFEKE-AKELEQL 661 L K L + D NY E ++K + DL K+L K+ EKE K+LE Sbjct: 584 LVGKTLNFNKAVADAKNTGNYDE-----VKKA--QKDL-EKSLRKREHLEKEVEKKLESK 635 Query: 662 ENALNEKEADFEEFIEEHSSEEGLFYELKINESVLKKELKNATDLEDKEILKTALELLEA 721 N+ EA + +S++ + L IN+ + A K I + + LE Sbjct: 636 SGNKNKMEAK-----AQANSQKDEIFAL-INKEANRDARAIAYAQNLKGIKRELSDKLEN 689 Query: 722 KNKALKMKNKAHEELE-------LKAFHQYKNLKLGEIKDLIIQDKWLKSLKNALENKIL 774 NK LK +K+ +E + KA K LK G +KDL I +W+ ++N + Sbjct: 690 VNKNLKDFDKSFDEFKNGKNKDFSKAEETLKALK-GSVKDLGINPEWISKVEN-----LN 743 Query: 775 KRINAFTSALNKIISNYSNSLLELDKEVKE 804 +N F + NK S + + +L+ VK+ Sbjct: 744 AALNEFKNGKNKDFSKVTQAKSDLENSVKD 773
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 109 bits (275), Expect = 5e-28 Identities = 76/401 (18%), Positives = 151/401 (37%), Gaps = 29/401 (7%) Query: 54 KKPPESVLKNTLALDFCLNKFTKNAKILQANIIDNDRILEITGAKDLAYKSENFILRLEM 113 K P + + N N I + L + ++ ++ +N + L + Sbjct: 170 KLNPFDFSYDMIENFTKENSLQLNDNIFSKIFTGVSKTL----SSEICFRLKNNSIDLSL 225 Query: 114 IPKKANLMILDKEKCVIEA--FRFNDRVAKNDILGALPPN-TYEHQERDLDFKGLLDILE 170 K + + I++ F FN N +G N + + + + +LE Sbjct: 226 SNLKEIVEVCKDLFKEIQSNKFEFNCYTKNNSFVGFYCLNLMSKEDYKKIQYDSSSKLLE 285 Query: 171 KDFLSYQHKE-LEHKKNHIIKRLNMQKERLKEKLEKLEDPKNLQLEAKELQTQASLLLTY 229 + + + L+ K + + K + R +K + L + + + LL Sbjct: 286 NFYYAKDKSDRLKSKSSDLQKIVMNNINRCTKKDKILNNTLKKCEDKDIFKLYGELLTAN 345 Query: 230 QHLINKHESRVVLKDFED---KECAIEIDKSMPLNAFINKKFTLSKKKKQKSQFLYLEEE 286 + + K S + L ++ I +D++ + + + K K+ + + Sbjct: 346 IYALKKGLSHIELANYYSENYDTVKITLDENKTPSQNVQSYYKKYNKLKKSEEAANEQLL 405 Query: 287 NLKEKIAFKENQINYVKGAQEESVLE------------MFMPVKNSKTKRPMSGYEVLYY 334 +E++ + + + + A +E F + SK + + Sbjct: 406 QNEEELNYLYSVLTNINNADNYDEIEEIKKELIETGYIKFKKIYKSKKSKTSKPMHFISK 465 Query: 335 KDFKIGLGKNQKENIKL-LQDARANDLWMHVRDIPGSHLIVFCQKNTPKDEIIMELAKML 393 I +GKN +N L L+ A +D+W H ++IPGSH+IV + P + ++E A + Sbjct: 466 DGIDIYVGKNNIQNDYLTLKFANKHDIWFHTKNIPGSHVIVKNIMDIP-ESTLLEAANLA 524 Query: 394 IKMQKDVFNS-YEIDYTQRKFVKIIKGAN---VIYSKYRTI 430 K +S +DYT+ K VK GA VIYS +TI Sbjct: 525 AYYSKSQNSSNVPVDYTEVKNVKKPNGAKPGMVIYSTNQTI 565 Score = 34.8 bits (80), Expect = 6e-04 Identities = 21/92 (22%), Positives = 48/92 (52%), Gaps = 5/92 (5%) Query: 46 NAPYIGLSKKPPESVLKNTLALDFCLNKFTKNAKILQANIIDNDRI--LEITGAKDLAYK 103 N P I L+ + +K + L K+ NAKI+ + I+ DRI ++ +L + Sbjct: 55 NYPRIHLTDLTKPNPIKAPMFCMV-LRKYISNAKIVDIHQINQDRIVVIDFESTDELGFN 113 Query: 104 SENFILRLEMIPKKANLMILDK-EKCVIEAFR 134 S + L +E++ + +N+ ++ K + ++++ + Sbjct: 114 SI-YSLIIEIMGRHSNMTLIRKRDNIIMDSIK 144
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 132 bits (333), Expect = 3e-40 Identities = 39/203 (19%), Positives = 75/203 (36%), Gaps = 6/203 (2%) Query: 40 QSVFRLERNRLKIAYKLLGLMSFIALILAIVLISVLPLQKTEHHF--VDFLNQDKHYAII 97 + K+A+ + G+ +A + + ++ PL+ E + VD + A Sbjct: 22 RDKLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIAAK 81 Query: 98 QRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQN 157 D +I+ +EA+ + + YV RE + ++ V + S+ R+ KT N Sbjct: 82 LHGDATITYDEAVRKYFLATYVRYREGWIAAAREEYFDAVMVMSARPEQDRWSRFYKTDN 141 Query: 158 SIYAQSHLEREVHI-VNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIA-LSYLFDT 215 Q+ L + V I +A V + + + K +A + Y D Sbjct: 142 PQSPQNILANRTDVFVEIKRVSFLGGNVAQVYFTKESVTGSNST--KTDAVATIKYKVDG 199 Query: 216 PDFDYASMPKNPTGFKITRYSIT 238 KNP G+++ Y Sbjct: 200 TPSKEVDRFKNPLGYQVESYRAD 222
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 32.1 bits (72), Expect = 0.003 Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 8/72 (11%) Query: 188 KEETKEEETITIGDSTNAMKIVKKDIQKGYRALKSSQ--RKWYCLGICSKKSKLSLMPEE 245 KE+ +EE+ I D A+ + Q + ALK + R + K+SK +MP E Sbjct: 365 KEKIREEKQKIILDQAKAL-----ETQYVHNALKRNPVPRNYNYYQAPEKRSK-HIMPSE 418 Query: 246 IFNDKQFTYFKF 257 IF+D FTYF F Sbjct: 419 IFDDGTFTYFGF 430
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 87.9 bits (218), Expect = 1e-21 Identities = 46/180 (25%), Positives = 72/180 (40%), Gaps = 19/180 (10%) Query: 7 LITGVTGQDGSYLAEYLLNLGYEVHGLKRRSSSINTSRIDHLYEDLHSEHKRRFFLHYGD 66 L+TG G G ++++ LL G++V G+ + + S E L F H D Sbjct: 4 LVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQP---GFQFHKID 60 Query: 67 MTDSSNLIHLIATTKPTEIYNLAAQSHVKVSFETPEYTANADGIGTLRILEAMRILGLEK 126 + D + L A+ ++ + V+ S E P A+++ G L ILE R ++ Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQ- 119 Query: 127 KTRFYQASTSELYGEVLETPQNENTPF-------NPRSPYAVAKMYAFYITKNYREAYNL 179 AS+S +YG N PF +P S YA K + Y Y L Sbjct: 120 --HLLYASSSSVYGL------NRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGL 171
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 48.2 bits (115), Expect = 1e-08 Identities = 52/346 (15%), Positives = 107/346 (30%), Gaps = 54/346 (15%) Query: 5 ILITGAYGMVGKNTALYFKKNKPDV-----------ALLTPKKSELY-----------LL 42 L+TGA G +G + + + V L + EL L Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDLA 62 Query: 43 DKDNVQAYLKEYKPTGIIHCAGRVGGIVANMNDLSAYMVENLLMGLYLFSSALDLGVKKA 102 D++ + + R + ++ + AY NL L + ++ Sbjct: 63 DREGMTDLFASGHFERVFISPHR-LAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 103 INLASSCAYPKFAPNPLKESDLLNGSLEPTNEGYALAKLSVMKYCEYVSAEKGVFYKTLV 162 + +SS Y P D ++ + YA K + S G+ L Sbjct: 122 LYASSSSVYGLNRKMPFSTDDSVDHPVSL----YAATKKANELMAHTYSHLYGLPATGLR 177 Query: 163 PCNLYGEFDKFEEKIAHMIPGLIARMHTAKLKNEKEFAMWGDGTARREYLNAKDLARFIS 222 +YG + + P + T + K ++ G +R++ D+A I Sbjct: 178 FFTVYGPWGR---------PDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAII 228 Query: 223 LAYENIASIPS-----------------VMNVGSGVDYSIEEYYKMVAQVLDYKGAFVKD 265 + I + V N+G+ + +Y + + L + Sbjct: 229 RLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNML 288 Query: 266 LSKPVGMQQKLMDISK-QKALKWELEIPLEQGIKEAYEYYLKLLEV 310 +P + + D + + + E ++ G+K +Y +V Sbjct: 289 PLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDFYKV 334
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 148 bits (376), Expect = 5e-49 Identities = 39/140 (27%), Positives = 75/140 (53%), Gaps = 1/140 (0%) Query: 5 EILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEEFADMFDDLAERIVQLGHH 64 L ++ +L+ K+H FHW VKG FF +H+ EE+Y+ A+ D +AER++ +G Sbjct: 15 NSLNTQLSNWFLLYSKLHRFHWYVKGPHFFTLHEKFEELYDHAAETVDTIAERLLAIGGQ 74 Query: 65 PLVTLSEAIKLTRVKEETKTSFHSKDIFKEILEDYKHLEKEFKTLSNTAEKEGDKVTVTY 124 P+ T+ E + + + + + ++ + ++ DYK + E K + AE+ D T Sbjct: 75 PVATVKEYTEHASITDGGNET-SASEMVQALVNDYKQISSESKFVIGLAEENQDNATADL 133 Query: 125 ADDQLAKLQKSIWMLQAHLA 144 + +++K +WML ++L Sbjct: 134 FVGLIEEVEKQVWMLSSYLG 153
>PF06580#Sensor histidine kinase Length = 349 Score = 29.8 bits (67), Expect = 0.015 Identities = 10/71 (14%), Positives = 25/71 (35%), Gaps = 13/71 (18%) Query: 281 IVLQNFLYNAIDAIEALEESEQ-GQVKIEAFIQNEFIVFTIIDNGKEVENKSALFEPFET 339 +++Q + N I + + Q G++ ++ N + + + G + Sbjct: 258 MLVQTLVENGI--KHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTK------- 308 Query: 340 TKLKGNGLGLA 350 + G GL Sbjct: 309 ---ESTGTGLQ 316
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 360 bits (925), Expect = e-126 Identities = 119/345 (34%), Positives = 191/345 (55%), Gaps = 26/345 (7%) Query: 19 AEKIGDIASVVGVRDNQLIGYGLVIGLNGTGDK-SGSKFTMQSISNMLESVNVKISADDI 77 +I DIAS+ RDNQLIGYGLV+GL GTGD S FT QS+ ML+++ + Sbjct: 28 TSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDSLRSSPFTEQSMRAMLQNLGITTQGGQS 87 Query: 78 KSKNVAAVMITASLPPFARQGDKIDVQISSIGDAKSIQGGTLVMTPLNAVDGNIYALAQG 137 +KN+AAVM+TA+LPPFA G ++DV +SS+GDA S++GG L+MT L+ DG IYA+AQG Sbjct: 88 NAKNIAAVMVTANLPPFASPGSRVDVTVSSLGDATSLRGGNLIMTSLSGADGQIYAVAQG 147 Query: 138 AITSGN-----------SNNLLSANIINGATIEREVSYDLFHKNAMVLSLKNPNFKNAIQ 186 A+ SA + NGA IERE+ +VL L+NP+F A++ Sbjct: 148 ALIVNGFSAQGDAATLTQGVTTSARVPNGAIIERELPSKFKDSVNLVLQLRNPDFSTAVR 207 Query: 187 VQNTLNKV----FGNKVAIALDPKTIQITRPERFSMVEFLALVQEIPINYSAKNKIIVDE 242 V + +N +G+ +A D + I + +P + +A ++ + + K++++E Sbjct: 208 VADVVNAFARARYGDPIAEPRDSQEIAVQKPRVADLTRLMAEIENLTVETDTPAKVVINE 267 Query: 243 KSGTIVSGVDIMVHPIVVTSQDITLKITKEPLDN--------SKNAQDLDNNMSLDTAHN 294 ++GTIV G D+ + + V+ +T+++T+ P Q + M++ Sbjct: 268 RTGTIVIGADVRISRVAVSYGTLTVQVTESPQVIQPAPFSRGQTAVQPQTDIMAMQEGSK 327 Query: 295 TLSSNGKNITIAGVVKALQKIGVSAKGMVSILQALKKSGAISAEM 339 G ++ +V L IG+ A G+++ILQ +K +GA+ AE+ Sbjct: 328 VAIVEGPDLR--TLVAGLNSIGLKADGIIAILQGIKSAGALQAEL 370
>SECA#SecA protein signature. Length = 901 Score = 29.8 bits (67), Expect = 0.028 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%) Query: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRG 320 +V T + ++++ + L K L+ + A+I+A A V +AT++A RG Sbjct: 453 LVGTISIEKSELVSNELTKAGIKHNVLNAKFHANE--AAIVAQAGYPAAVTIATNMAGRG 510 Query: 321 LDI 323 DI Sbjct: 511 TDI 513
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 32.1 bits (73), Expect = 0.006 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 7/50 (14%) Query: 30 VAIVGESGSGKSSIANIIMRLNPR----FKPHNGEVLFETANLLKESEAF 75 + I GESG+GK +A + R F N + L ESE F Sbjct: 163 LMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRD---LIESELF 209
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 553 bits (1425), Expect = 0.0 Identities = 179/582 (30%), Positives = 295/582 (50%), Gaps = 66/582 (11%) Query: 11 VDFFIKLNKKQKIALIVAGVLITALLVFLLLYPFKEKDYTQGGYGVLFERLDSSDNALIL 70 +++ +L +I LIVAG A++V ++L+ K DY LF L D I+ Sbjct: 13 LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWA-KTPDYR-----TLFSNLSDQDGGAIV 66 Query: 71 QHLQQNQIPYKILKDD-TILIPKDKVYEERITLASQGIPKTSKVGFEIFDTKDFGATDFD 129 L Q IPY+ I +P DKV+E R+ LA QG+PK VGFE+ D + FG + F Sbjct: 67 AQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKFGISQFS 126 Query: 130 QNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLKLKPDMKLS 189 + + RA+EGEL+RTIE+L P+ A VH+A+PK S+FV ++ PSASV + L+P L Sbjct: 127 EQVNYQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALD 186 Query: 190 PTQILGIKNLIAAAVPKLTTENVKIVNENGESIGEGDILENSKELALEQLRYKQNFENIL 249 QI + +L+++AV L NV +V+++G + + + + ++L QL++ + E+ + Sbjct: 187 EGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNT--SGRDLNDAQLKFANDVESRI 244 Query: 250 ENKIVNILAPIVGGKNKVVARVNAEFDFSQRKSTKETFDPNN-----VVRSEQNLEEKKE 304 + +I IL+PIVG N V A+V A+ DF+ ++ T+E + PN +RS Q ++ Sbjct: 245 QRRIEAILSPIVGNGN-VHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQV 303 Query: 305 GAPKKQVGGVPGVVSN-IGPVQGLKDNKEPEKYEKSQN---------------------- 341 GA GGVPG +SN P P + +QN Sbjct: 304 GAGYP--GGVPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRSTQRNE 361 Query: 342 TTNYEVGKTISEIKGEFGTLVRLNAAVVVDGKYKIVLKDGANTLEYEPLSDESLKKINAL 401 T+NYEV +TI K G + RL+ AVVV+ K L DG + PL+ + +K+I L Sbjct: 362 TSNYEVDRTIRHTKMNVGDIERLSVAVVVNYK---TLADG----KPLPLTADQMKQIEDL 414 Query: 402 VKQAIGYNQNRGDDVAVSNFEFNPMAPMLDNATLSEKIMHKTQKILGSFTPLIKYILVFI 461 ++A+G++ RGD + V N F+ + T E + Q + +++LV + Sbjct: 415 TREAMGFSDKRGDTLNVVNSPFSAVDN-----TGGELPFWQQQSFIDQLLAAGRWLLVLV 469 Query: 462 VLFIFYKKVIVPFSERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNA 521 V +I ++K + P R +E ++ + E + E L+K L+++ +Q Sbjct: 470 VAWILWRKAVRPQLTRRVEEAKAAQEQAQVRQETEEAVEVRLSKDEQLQQRRANQ----- 524 Query: 522 TFSEEEVRYEIVLEKIRGTLKERPDEIAMLFKLLIKDEISSD 563 + E++ ++IR E D + L+I+ +S+D Sbjct: 525 -----RLGAEVMSQRIR----EMSDNDPRVVALVIRQWMSND 557
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 348 bits (895), Expect = e-122 Identities = 121/338 (35%), Positives = 208/338 (61%), Gaps = 4/338 (1%) Query: 8 KQKAQLDELSMSEKIAILLIQVGEDTTGEILRHLDIDSITEISKQIVQLNGTDKQIGAAV 67 K+ + L+ +K AILL+ +G + + ++ ++L + I ++ +I +L ++ V Sbjct: 7 KEILDVSALTGKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKDNV 66 Query: 68 LEEFFAIFQSNQYINTGGLEYARELLTRTLGSEEARKVMDKLTKSLQTQKNFAYLGKIKP 127 L EF + + ++I GG++YARELL ++LG+++A +++ L +LQ+ + F ++ + P Sbjct: 67 LLEFKELMMAQEFIQKGGIDYARELLEKSLGTQKAVDIINNLGSALQS-RPFEFVRRADP 125 Query: 128 QQLADFIINEHPQTIALILAHMEAPNAAETLSYFPDEMKAEISIRMANLGEISPQVVKRV 187 + +FI EHPQTIALIL++++ A+ LS P E++ ++ R+A + SP+VV+ V Sbjct: 126 ANILNFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVREV 185 Query: 188 STVLENKLESLTSYK-IEVGGLRAVAEIFNRLGQKSAKTTLARIESVDNKLAGAIKEMMF 246 VLE KL SL+S GG+ V EI N +K+ K + +E D +LA IK+ MF Sbjct: 186 ERVLEKKLASLSSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEIKKKMF 245 Query: 247 TFEDISKLDNFAIREILKVADKKDLSLALKTSTQDLTDKFLNNMSSRAAEQFIEEMQYLG 306 FEDI LD+ +I+ +L+ D ++L+ ALK+ + +K NMS RAA E+M++LG Sbjct: 246 VFEDIVLLDDRSIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDMEFLG 305 Query: 307 AVKIKDVDVAQRKIIEIVQSLQEKG--VIQTGEEEDVI 342 + KDV+ +Q+KI+ +++ L+E+G VI G EEDV+ Sbjct: 306 PTRRKDVEESQQKIVSLIRKLEEQGEIVISRGGEEDVL 343 Score = 31.3 bits (71), Expect = 0.006 Identities = 20/103 (19%), Positives = 41/103 (39%), Gaps = 3/103 (2%) Query: 4 KLTPKQKAQLDELSMSEKIAILLIQVGEDTTGEILRHLDIDSITEISKQIVQLNGTDKQI 63 + P + + IA++L + IL L + T ++++I ++ T ++ Sbjct: 122 RADPANILNFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEV 181 Query: 64 GAA---VLEEFFAIFQSNQYINTGGLEYARELLTRTLGSEEAR 103 VLE+ A S Y + GG++ E++ E Sbjct: 182 VREVERVLEKKLASLSSEDYTSAGGVDNVVEIINMADRKTEKF 224
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 37.1 bits (85), Expect = 4e-05 Identities = 46/212 (21%), Positives = 95/212 (44%), Gaps = 17/212 (8%) Query: 45 PNPEEPLEKKAIENDLIDCLLKKTDELSSHLVKLQMQFEKAQEES-KALIENAKNDGYKI 103 P E + E +I+ + L L +LQMQ A E+ +A I + G+K Sbjct: 17 PPQAEFVPIVEPEETIIE---EAEPSLEQQLAQLQMQ---AHEQGYQAGIAEGRQQGHKQ 70 Query: 104 GFKEGEEKMRNELTHSVNEEKNQLLHAITALDEKMKKSEDHLMALE----KELSAIAIDI 159 G++EG + L + E K+Q + + + + + L AL+ L +A++ Sbjct: 71 GYQEG---LAQGLEQGLAEAKSQQAPIHARMQQLVSEFQTTLDALDSVIASRLMQMALEA 127 Query: 160 AKEVILKEVEDNSQKVALALAEELLKNVLDATDIHLKVNPLDYPYLNERLQNASKI---K 216 A++VI + ++ + + + L + L + L+V+P D +++ L + + Sbjct: 128 ARQVIGQTPTVDNSALIKQIQQLLQQEPLFSGKPQLRVHPDDLQRVDDMLGATLSLHGWR 187 Query: 217 LESNEAISKGGVMITSSNGSLDGNLMERFKTL 248 L + + GG +++ G LD ++ R++ L Sbjct: 188 LRGDPTLHPGGCKVSADEGDLDASVATRWQEL 219
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 141 bits (356), Expect = 2e-37 Identities = 99/437 (22%), Positives = 174/437 (39%), Gaps = 85/437 (19%) Query: 3 NIRNFSIIAHIDHGKSTLADCLIAECNAIS---NREMTSQVMDTMDIEKERGITIKAQSV 59 I N ++AH+D GK+TL + L+ AI+ + + + D +E++RGITI+ Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 60 RLNYTLKGEDYVLNLIDTPGHVDFSYEVSRSLCSCEGALLVVDATQGVEAQTIANVYIAL 119 + E+ +N+IDTPGH+DF EV RSL +GA+L++ A GV+AQT + Sbjct: 62 SFQW----ENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALR 117 Query: 120 DNHLEILPVINKIDLPNANVLEVKQDIEDTIGIDCFNANEVSAKARLGIKD--------- 170 + + INKID ++ V QDI++ + + +V + + + Sbjct: 118 KMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDT 177 Query: 171 -------LLEKIITTIPAPSGDFNAPLKALIYD-------------------------SW 198 LLEK ++ + + ++ + Sbjct: 178 VIEGNDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNK 237 Query: 199 F--------------------DNYLGALALVRIMDGSINTEQEILVMGTGKKHGVLGLYY 238 F LA +R+ G ++ + + K + +Y Sbjct: 238 FYSSTHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKI-KITEMYT 296 Query: 239 PNPLKKIPTKSLECGEIGIV---SLGLKSVTDIAVGDTLTDAKNPTPKPIEGFMPAKPFV 295 + GEI I+ L L SV +GDT P + IE P + Sbjct: 297 SINGELCKIDKAYSGEIVILQNEFLKLNSV----LGDTKLL---PQRERIEN---PLPLL 346 Query: 296 FAGLYPIETDRFEDLREALLKLQLNDCALNFEPESSVALGFGFRVGFLGLLHMEVIKERL 355 + P + + E L +ALL++ +D L + +S+ + FLG + MEV L Sbjct: 347 QTTVEPSKPQQREMLLDALLEISDSDPLLRYYVDSATH---EIILSFLGKVQMEVTCALL 403 Query: 356 EREFGLNLIATAPTVVY 372 + ++ + + PTV+Y Sbjct: 404 QEKYHVEIEIKEPTVIY 420 Score = 31.0 bits (70), Expect = 0.015 Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 2/75 (2%) Query: 399 IKEPFVRATIITPSEFLGNLMQLLNNKRGIQEKMEYLNQSRVMLTYSLPSNEIVMDFYDK 458 + EP++ I P E+L + L + V+L+ +P+ I ++ Sbjct: 535 LLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCI-QEYRSD 592 Query: 459 LKSCTKGYASFDYEP 473 L T G + E Sbjct: 593 LTFFTNGRSVCLTEL 607
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 29.2 bits (65), Expect = 0.021 Identities = 8/40 (20%), Positives = 16/40 (40%) Query: 3 NGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAVTG 42 + A + L+ SNN+++ N G+ R + Sbjct: 2 SLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMA 41
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 40.6 bits (95), Expect = 8e-06 Identities = 58/315 (18%), Positives = 104/315 (33%), Gaps = 67/315 (21%) Query: 37 APYFAKEFTHTNDPTLALISAFLVFMLGFFMRPLGSLFFGKLGDKKGRKTSMVYSIILMA 96 P A +F T + +AF++ G+ +GKL D+ G K +++ II+ Sbjct: 37 LPDIANDFNKPPASTNWVNTAFMLTFSI------GTAVYGKLSDQLGIKRLLLFGIIINC 90 Query: 97 LGSFMLALLPTKEIVGEWAFLFLLLARLLQGFSVGGE------YGVVATYLSELGKNGKK 150 GS + VG F L++AR +QG G VVA Y+ + + Sbjct: 91 FGSVIGF-------VGHSFFSLLIMARFIQG--AGAAAFPALVMVVVARYIPKENRGKAF 141 Query: 151 GFYGSFQYVTLVGGQLLAIFSLFIVENIYTHEQISAFAWRYLFALGGILALLSLFLRNIM 210 G GS + +G + I I+ W YL + I + FL ++ Sbjct: 142 GLIGS---IVAMGEGVGPAIGGMIAHYIH---------WSYLLLIPMITIITVPFLMKLL 189 Query: 211 EETMDSQTTSKTTIKEETQRGSLKELLNHKKALM-------IVFGLTMGGSLCFYTFTVY 263 + + +K + K ++ + T + Sbjct: 190 K-----------------KEVRIKGHFDIKGIILMSVGIVFFMLFTTSYSISFLIVSVLS 232 Query: 264 LKIFLTNSSSFSPK-------ESSFIMLLALSYFIFLQPLCG---MLADKIKRTQMLMVF 313 IF+ + + ++ M+ L I + G M+ +K L Sbjct: 233 FLIFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTA 292 Query: 314 AIAGLIVTPVVFYGI 328 I +I+ P I Sbjct: 293 EIGSVIIFPGTMSVI 307
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 34.7 bits (79), Expect = 0.002 Identities = 49/242 (20%), Positives = 77/242 (31%), Gaps = 37/242 (15%) Query: 169 FSPKKEGFENALSDIQKKETKNDKEKENLKKNPIDENHKTPNEESFLAIPTPY----NTT 224 ++P+ E N D T N+ + + P + +E+ + P P T Sbjct: 981 YNPEVEK-RNQTVDTTNITTPNNIQADV-PSVPSNNEEIARVDEAPVPPPAPATPSETTE 1038 Query: 225 LNALEP--QEGLVQISSNHPTHYTI----YPKKNRFDDLSNPTNPTLKEIKQETKEKEPT 278 A + V+ + T T K+ + + +N + + ETKE + T Sbjct: 1039 TVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTT 1098 Query: 279 PKKETLT-----------------PATPATLKP-------VMPTLAPNTENDNKTENHKA 314 KET T P + + P V P P END T N K Sbjct: 1099 ETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPAREND-PTVNIKE 1157 Query: 315 PNHPTKEENMQENTQEENIKEMIKENIKEEEKEVQNAPSFSPITPTSAKKPVMVKELSEN 374 P T E +E + + + N+ +P T A V S N Sbjct: 1158 PQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSN 1217 Query: 375 KE 376 K Sbjct: 1218 KP 1219
>STREPTOPAIN#Streptopain (C10) cysteine protease family signature. Length = 398 Score = 28.5 bits (63), Expect = 0.003 Identities = 18/61 (29%), Positives = 27/61 (44%) Query: 2 KIKAIMLGLVVSGGLLLANGEQDAYNFKAMEKEIKEITKMIITTGEAVKMNEKQFDQLNA 61 K+ +L L+ GG +LAN NF EKE K+ I A+K + + + Sbjct: 5 KLGVRLLSLLALGGFVLANPVFADQNFARNEKEAKDSAITFIQKSAAIKAGARSAEDIKL 64 Query: 62 D 62 D Sbjct: 65 D 65
>SECYTRNLCASE#Preprotein translocase SecY subunit signature. Length = 437 Score = 32.0 bits (73), Expect = 0.008 Identities = 20/124 (16%), Positives = 41/124 (33%), Gaps = 14/124 (11%) Query: 86 LAVVFTLF-----VVYLSMGAMLSPSLLPESLLTIDNHSNFLNACLQL-IGALIVMHLGR 139 L V + V + + ++ + + + + G +VM LG Sbjct: 120 LTVALAILQGTGLVATARSAPLFGRCSVGGQIVPDQSIFTTITMVICMTAGTCVVMWLGE 179 Query: 140 DFYIQGFKALWHRQPNMSSLIAIGTSAALISSLWPLYLVYTNQWSYGHYYFESVCVILMF 199 +G MS L+ I +A S+LW + + G F +V + + Sbjct: 180 LITDRGIGN------GMSILMFISIAATFPSALWAIK--KQGTLAGGWIEFGTVIAVGLI 231 Query: 200 VMVG 203 ++ Sbjct: 232 MVAL 235
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 34.4 bits (79), Expect = 0.001 Identities = 26/131 (19%), Positives = 49/131 (37%), Gaps = 28/131 (21%) Query: 157 KKLINAEKPNVRFNDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGK 216 ++ E + + G A +E+ ++ R +++ G GTGK Sbjct: 124 RRPSKLEDDSQDGMPLVGRSAAMQEIYRVLA------RLMQTDLT----LMITGESGTGK 173 Query: 217 TLLAKAV---AGEAHVPFFSMGGSSF------IEMF-----VGLGASRVRD-LFETAKKQ 261 L+A+A+ + PF ++ ++ E+F GA FE A+ Sbjct: 174 ELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGG 233 Query: 262 APSIIFIDEID 272 +F+DEI Sbjct: 234 T---LFLDEIG 241
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 86.0 bits (213), Expect = 5e-23 Identities = 30/109 (27%), Positives = 57/109 (52%), Gaps = 4/109 (3%) Query: 2 KLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLNANADTKVLITDWNMPEMNG 61 +LV DD + +R ++ LSR GY DV + W + A D +++TD MP+ N Sbjct: 5 TILVADDDAAIRTVLNQALSRAGY-DVRITSNAATLWRWI-AAGDGDLVVTDVVMPDENA 62 Query: 62 LDLVIKVRADERFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQ 110 DL+ +++ + ++P+++++ + I A + G +Y+ KPF Sbjct: 63 FDLLPRIK--KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLT 109
>PF07520#Virulence protein SrfB Length = 1041 Score = 29.2 bits (65), Expect = 0.010 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 4/49 (8%) Query: 121 LEAEDNKIAAIGSGG---NFALSAARALDNFAHLEPRKLVEESLKIAGD 166 E+ ++A I GG + ++ R DN L P + E ++AGD Sbjct: 590 GESPSLRLACIDVGGGTTDLMVTTYRGEDNRV-LHPEQTFREGFRVAGD 637
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 29.0 bits (65), Expect = 0.044 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 3/36 (8%) Query: 48 TPKNILMIGSTGVGKTEIARRI---AKIMKLPFVKV 80 T +++ G +G GK +AR + K PFV + Sbjct: 159 TDLTLMITGESGTGKELVARALHDYGKRRNGPFVAI 194
>PF03944#delta endotoxin Length = 633 Score = 32.3 bits (73), Expect = 0.002 Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 3/94 (3%) Query: 68 LHHQEKLLNQCMLSQALKAMGDAELCVFLASVHDDLKGYEEFLSLCQKPHILAVSKIDTA 127 L E+ LNQ + + + A +AEL A+V + + + FL+ + L+++ Sbjct: 94 LRETERFLNQRLNTDTV-ARVNAELTGLQANVEEFNRQVDNFLNPNRNAVPLSITSSVNT 152 Query: 128 THKQVLQKLQEYQQYASQFLALVPLSAKKSQNLN 161 + L +L ++Q Q L L+PL A+ + NL+ Sbjct: 153 MQQLFLNRLPQFQMQGYQLL-LLPLFAQAA-NLH 184
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 30.5 bits (69), Expect = 0.003 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 4/64 (6%) Query: 88 LQSYSVMLFFNLLLLIDILGFLPFSIYHHFMASLIFSALFCSSLFLSSPLLGVIALVALS 147 L Y F L+L+ +LPFS S + + +L PLL V AL+A++ Sbjct: 45 LSDYYFEHFSKLMLIPAEQSYLPFSQ----ALSYVVDNVLLEFFYLCFPLLTVAALMAIA 100 Query: 148 SSLL 151 S ++ Sbjct: 101 SHVV 104
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 49.2 bits (117), Expect = 4e-09 Identities = 36/206 (17%), Positives = 71/206 (34%), Gaps = 14/206 (6%) Query: 104 PTPPKPIEKPKPKPKPKPEPKKPNHKHKALKKVEKVEEKKVVEEKKEEKKIVEQKVEQKK 163 P P +PI P P+ + VE E + + E +E +V +K + K Sbjct: 44 PAPAQPISVTMVAPADLEPPQAV--QPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKP 101 Query: 164 VEEKKPVKKEFDPNQLSFLPKEVAPPRQENNKGLDNQTRRDIDELYGEEFGDLGTAEKDF 223 + KPVKK P ++V P +N Sbjct: 102 KPKPKPVKKVEQP------KRDVKPVESRPASPFENTAPARPTSSTATAATSKPVTSVA- 154 Query: 224 IRNNLRDIGRITQKYLEYPQVAAYLGQDGTNAVEFYLHPNGDISDLKIIIGSEYKMLDDN 283 +++ +YP A L +G V+F + P+G + +++I+ M + Sbjct: 155 -----SGPRALSRNQPQYPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAKPANMFERE 209 Query: 284 TLKTIQIAYKDYPRPKTKTLIRIRVR 309 ++ + +P + ++ I + Sbjct: 210 VKNAMRRWRYEPGKPGSGIVVNILFK 235
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 99 bits (249), Expect = 2e-30 Identities = 25/77 (32%), Positives = 47/77 (61%) Query: 34 LICDYKNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKG 93 + D ++D+ + + ELG T++ + ++LR +GSV+ L AGE +D +NG +I +G Sbjct: 50 AMQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQG 109 Query: 94 EVMVFERNLAIRLNEIL 110 EV+V +R+ +I+ Sbjct: 110 EVVVVADKYGVRITDII 126
>OMS28PORIN#OMS28 porin signature. Length = 257 Score = 30.1 bits (67), Expect = 0.006 Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 8/77 (10%) Query: 60 LFEKYPSVKDLAL-----ASLEEVKETIKSVSYFNNKSKHLISMAQKVVRDFKGVIPSTQ 114 + K P+ K+L L A +E+VKET+ + +++ + AQKV+ G+ PS + Sbjct: 164 MLNKSPNNKELELTKEEFAKVEQVKETLMASERALDET---VQEAQKVLNMVNGLNPSNK 220 Query: 115 KELMSLDGVGQKTANVV 131 ++++ V + +NVV Sbjct: 221 DQVLAKKDVAKAISNVV 237
>FLAGELLIN#Flagellin signature. Length = 507 Score = 243 bits (621), Expect = 2e-76 Identities = 127/518 (24%), Positives = 210/518 (40%), Gaps = 22/518 (4%) Query: 2 AFQVNTNINAMNAHVQSALTQNALKTSLERLSSGLRINKAADDASGMTVADSLRSQANSL 61 A +NTN ++ +Q++L +++ERLSSGLRIN A DDA+G +A+ S L Sbjct: 1 AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60 Query: 62 GQAIANTNDGMGIIQVADKAMDEQLKILDTVKVKATQAAQDGQTTESRKAIQSDIVRLIQ 121 QA N NDG+ I Q + A++E L V+ + QA + K+IQ +I + ++ Sbjct: 61 TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120 Query: 122 GLDNIGNTTTYNGQALLSGQFTNKEFQVGAYSNQSIKASIGSTTSDKIGQVRI-ATGALI 180 +D + N T +NG +LS + QVGA ++I + +G G Sbjct: 121 EIDRVSNQTQFNGVKVLSQDN-QMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKE 179 Query: 181 TASGDISLTFKQVDGVNDVTLESVKISSSAGTGIGVLAEVINKNSNQTGVRAHASVITTS 240 GD+ +FK V G + + + K +G V ++ V A +TT Sbjct: 180 ATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTD 239 Query: 241 DVAVQSGSLSNLTLNGIRLGNIADIKKNDSDGRLVAAINAVTSETGVEAYTDQNGRLNLR 300 D N + K A A+ + + + + Sbjct: 240 DAE-----------NNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTID 288 Query: 301 SLDGRGIEIKTDSTSNGPSALTMVNGGQDLTKGSTNYGRLSLTRLDAKSINV------VS 354 + G K +T NG V S + +N + Sbjct: 289 TKTGNDGNGKVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKT 348 Query: 355 ASDSQHLGFSAIGFGESQVAETTVNLRDVTGNFNANVKSASGANYNAVIASGNQSL---G 411 ++S L ++ TVN + T N + + +G + S Sbjct: 349 KNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINE 408 Query: 412 AGVTTLRGAMVVIDIAESAMKMLDKVRSDLGSVQNQMISTVNNISITQVNVKAAESQIRD 471 + + +SA+ +D VRS LG++QN+ S + N+ T N+ +A S+I D Sbjct: 409 DAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIED 468 Query: 472 VDFAEESANFNKNNILAQSGSYAMSQANTVQQNILRLL 509 D+A E +N +K IL Q+G+ ++QAN V QN+L LL Sbjct: 469 ADYATEVSNMSKAQILQQAGTSVLAQANQVPQNVLSLL 506
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.7 bits (66), Expect = 0.011 Identities = 13/95 (13%), Positives = 26/95 (27%), Gaps = 20/95 (21%) Query: 60 ILENDDEINLKKIAYIEFSKLAECVRPSGFYNQKAKRLIDLSGNILKDFQSFENFKQEVT 119 L + + +A+ E + VR + +KA E+ Sbjct: 458 ALRSAPALA-GCVAFDELREQPVAVRAFPW--RKAPGP-------------LEDADVLRL 501 Query: 120 REWLLDQKGIGKESADAILCYVCAKEVMVVDKYSY 154 +++ G G+ SA + D Sbjct: 502 ADYVETTYGTGEASAQTTEQAINV----AADMNRV 532
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 54.1 bits (130), Expect = 9e-11 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 5/82 (6%) Query: 27 NVKAVQDSKLTLDSTGIVDSIKVTEGSVVKKGDVLLLLYNQDKQAQSDSTEQQLIFAKKQ 86 K ++ IV I V EG V+KGDVLL L +A + T+ L+ A+ + Sbjct: 95 RSKEIKPI-----ENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLE 149 Query: 87 YQRYSKIGGAVDRNTLESYEFN 108 RY + +++ N L + Sbjct: 150 QTRYQILSRSIELNKLPELKLP 171 Score = 31.7 bits (72), Expect = 0.002 Identities = 21/152 (13%), Positives = 48/152 (31%), Gaps = 25/152 (16%) Query: 70 QAQSDSTEQQLIFAKKQYQR--YSKIGGAVDRNTLESYEFNYRRLESDYAYSIAVLNKTI 127 +++ S +++ + ++ K+ D + + E ++ Sbjct: 279 ESEILSAKEEYQLVTQLFKNEILDKLRQTTDN--IGLLTLELAKNEER-------QQASV 329 Query: 128 LRAPFDGVIASKNIQVGEGVSANNTVLLRLVSHARKLVIE--FDSKYINAVKVG------ 179 +RAP + + GV L+ +V L + +K I + VG Sbjct: 330 IRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIK 389 Query: 180 -DTYTYSIDGDSNQHEAKITKIYP--TVDENT 208 + + Y+ G K+ I D+ Sbjct: 390 VEAFPYTRYGYL---VGKVKNINLDAIEDQRL 418
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 898 bits (2321), Expect = 0.0 Identities = 289/1040 (27%), Positives = 518/1040 (49%), Gaps = 42/1040 (4%) Query: 1 MYKTAINRPITTLMFALAIVFFGTMGFKKLSVALFPKIDMPTVVVTTTYPGASAEIIESK 60 M I RPI + A+ ++ G + +L VA +P I P V V+ YPGA A+ ++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VTDKIEEAVMGIDGIKKVTSTSSKNVSIVV-IEFELEKPNEEALNDVVNKISSVR-FDDS 118 VT IE+ + GID + ++STS S+ + + F+ + A V NK+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 119 NVKKPSINKFDTDSQAIISLFVSSSSVPAT--TLNDYAKNTIKPMLQKINGVGGVQLNGF 176 V++ I+ + S ++ S + T ++DY + +K L ++NGVG VQL G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG- 179 Query: 177 RERQIRIYADPTLMNKYNLTYADLFNTLKAENVEIDGGRIVNS------QRELSILINAN 230 + +RI+ D L+NKY LT D+ N LK +N +I G++ + Q SI+ Sbjct: 180 AQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 231 SYSVADVEKIQV-----GNHVRLGDIAKIEIGLEEDNTFASFKDKPGVILEIQKIAGANE 285 + + K+ + G+ VRL D+A++E+G E N A KP L I+ GAN Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 286 IEIVDRVYEALKRIQAISP-NYEIRPFLDTTGYIRTSIEDVKFDLVLGAILAVLVVFAFL 344 ++ + L +Q P ++ DTT +++ SI +V L +L LV++ FL Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 345 RNGTITLVSAISIPISIMGTFALIQWMGFSLNMLTMVALTLAIGIIIDDAIVVIENIHK- 403 +N TL+ I++P+ ++GTFA++ G+S+N LTM + LAIG+++DDAIVV+EN+ + Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 404 KLEMGMNKRKASYEGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQSFGITVALAIA 463 +E + ++A+ + + +I ALV I+ +L +VF+P+ G G ++ F IT+ A+A Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 464 LSYVVVVTIIPMVSSVVINPRHS-------RFYVWSEPFFKALESYYTRLLQWVLNHKLI 516 LS +V + + P + + ++ P + F+ W F ++YT + +L Sbjct: 480 LSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539 Query: 517 IFIAVVLVFVGSLFVASKIGMEFMLKEDRGRFLVWLKAKPGVSIDY----MTQKSKIFQK 572 + L+ G + + ++ F+ +ED+G FL ++ G + + + Q + + K Sbjct: 540 YLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLK 599 Query: 573 AIEKHAEVEFTTLQVGY-GTAQNPFKAKIFVQLKPLKERKKEHELGQFELMSALRKELKS 631 + + E FT + G AQN FV LKP +ER E ++ + EL Sbjct: 600 NEKANVESVFTVNGFSFSGQAQNA--GMAFVSLKPWEERNG-DENSAEAVIHRAKMELGK 656 Query: 632 MPEAKGLESINLSEVSLIGGGGDSSPFQTFVFSHSQEAVDKSVANLKKFLLESPELKGKV 691 + + + N+ + G ++ F + + D + L + + + Sbjct: 657 IRDGF-VIPFNMPAIV---ELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASL 712 Query: 692 ESYHTSTSESQPQLQLKILRQNANKYGVSAQTIGSVVSSAFSGTSQASVFKQDGKEYDMI 751 S + E Q +L++ ++ A GVS I +S+A G + + F G+ + Sbjct: 713 VSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGG-TYVNDFIDRGRVKKLY 771 Query: 752 IRVPDNKRVSVEDIKRLQVRNKYDKLMFLDALVEITETKSPSSISRYNRQRSVTVLAEPN 811 ++ R+ ED+ +L VR+ +++ A + RYN S+ + E Sbjct: 772 VQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEA- 830 Query: 812 RNAGVSLGEILTQVSKNTKEWLVEGANYRFTGEADNAKETNGEFLIALATAFVLIYMILA 871 G S G+ + + +N L G Y +TG + + + + +A +FV++++ LA Sbjct: 831 -APGTSSGDAMALM-ENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLA 888 Query: 872 ALYESILEPFVIMVTMPLSFSGAFFALGLVHQPLSMFSMIGLILLIGMVGKNATLLIDVA 931 ALYES P +M+ +PL G A L +Q ++ M+GL+ IG+ KNA L+++ A Sbjct: 889 ALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFA 948 Query: 932 NE-ERKKGLNIQEAILFAGKTRLRPILMTTIAMVCGMLPLALASGDGAAMKSPIGIAMSG 990 + K+G + EA L A + RLRPILMT++A + G+LPLA+++G G+ ++ +GI + G Sbjct: 949 KDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMG 1008 Query: 991 GLMISMVLSLLIVPVFYRLL 1010 G++ + +L++ VPVF+ ++ Sbjct: 1009 GMVSATLLAIFFVPVFFVVI 1028
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 276 bits (708), Expect = 3e-77 Identities = 105/394 (26%), Positives = 180/394 (45%), Gaps = 14/394 (3%) Query: 2796 NAVNWLNALFVAKGGNPLFAPYYLQDTPTEHIVTLMKDITGALGMLAKPNLKNNSTDVLQ 2855 + L L + + +A + T I + T L +A K + L Sbjct: 907 QGRDLLQTLLI-DSHDAGYARTMIDATSANEITKQLNTATTTLNNIASLEHKTSGLQTLS 965 Query: 2856 LNTYTQQMGRLAKLSNFASFDSTDFSERLSSLKNQRFADAIPNAMDVILKYSQRDKLKNN 2915 L+ RL LS + F++RL +LK+QRFA + +A +V+ +++ + + N Sbjct: 966 LSNAMILNSRLVNLSRRHTNHIDSFAKRLQALKDQRFAS-LESAAEVLYQFAPKYEKPTN 1024 Query: 2916 LWATGVGGVSFVENGTGTLYGVNVGYDRFVK---SVIVGGYAAYGYSGFYER--ITSSKS 2970 +WA +GG S G +LYG + G D ++ IVGG+ +YGYS F + +S + Sbjct: 1025 VWANAIGGTSLNSGGNASLYGTSAGVDAYLNGEVEAIVGGFGSYGYSSFSNQANSLNSGA 1084 Query: 2971 DNVDVGLYARAFIKKSELTFSVNETWGANKTQISSNDALLSMINQSYQYNTWTTNARVNY 3030 +N + G+Y+R F + E F G++++ ++ ALL +NQSY Y ++ R +Y Sbjct: 1085 NNTNFGVYSRIFANQHEFDFEAQGALGSDQSSLNFKSALLRDLNQSYNYLAYSAATRASY 1144 Query: 3031 GYDFMFKNKSIILKPQIGLRYYYIGMTGLEGVMNNALYNQFKANADPSKKSVLMIDFAFE 3090 GYDF F +++LKP +G+ Y ++G T + + S + + E Sbjct: 1145 GYDFAFFRNALVLKPSVGVSYNHLGSTNFKS----NSNQKVALKNGASSQHLFNASANVE 1200 Query: 3091 NRHYFNKNSYFYAIGGIGRDLLVRSMGDKLVRFIGDNTLSYRKGELYNTFASITTGGEVR 3150 R+Y+ SYFY G+ ++ + V + R NT A + GGE++ Sbjct: 1201 ARYYYGDTSYFYMNAGVLQEFANFGSSNA-VSLNTFKVNATRNP--LNTHARVMMGGELK 1257 Query: 3151 LFKSFYANAGVGARFGLDYKMINIIGNIGMRLAF 3184 L K + N G L + + N+GMR +F Sbjct: 1258 LAKEVFLNLGFVYLHNLISNIGHFASNLGMRYSF 1291
>LCRVANTIGEN#Low calcium response V antigen signature. Length = 326 Score = 31.2 bits (70), Expect = 6e-04 Identities = 16/33 (48%), Positives = 20/33 (60%) Query: 16 KRKKLLTELAELEAEIKVSSERKSSFNISLSPS 48 R KL ELAEL AE+K+ S ++ N LS S Sbjct: 149 ARSKLREELAELTAELKIYSVIQAEINKHLSSS 181
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 52.1 bits (125), Expect = 1e-09 Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 6/87 (6%) Query: 194 ILIAEDSLSALKTLEKIVQTLELRYLAFPNGKELLDYLYEKEHYQQVGVVITDLEMPVIS 253 IL+A+D + L + + N L ++ +V+TD+ MP + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAA----GDGDLVVTDVVMPDEN 61 Query: 254 GFEVLKTIKADSRTEHLPVIINSSMSS 280 F++L IK LPV++ S+ ++ Sbjct: 62 AFDLLPRIK--KARPDLPVLVMSAQNT 86
>MALTOSEBP#Maltose binding protein signature. Length = 396 Score = 28.5 bits (63), Expect = 0.017 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 5/52 (9%) Query: 60 GELVPLEIVVETILSAIKSSDKGIILIDGYPRSVEQMQALDKELSAQNEVVL 111 G+L+ I VE LS I + D L+ P++ E++ ALDKEL A+ + L Sbjct: 127 GKLIAYPIAVEA-LSLIYNKD----LLPNPPKTWEEIPALDKELKAKGKSAL 173
>BACINVASINB#Salmonella/Shigella invasin protein B signature. Length = 593 Score = 37.4 bits (86), Expect = 9e-05 Identities = 21/111 (18%), Positives = 38/111 (34%) Query: 199 KIKRKLNHFIGNILARTEVYKKLVAKYDDLTGKYDDLTGKYDELTGKYDELTGKYDDLTG 258 ++ ++ +G T++Y+ + K D YD T K + K L Sbjct: 124 QVSKEFQTALGEAQEATDLYEASIKKTDTAKSVYDAATKKLTQAQNKLQSLDPADPGYAQ 183 Query: 259 KYDDLTGKYDELTGKYESLLAKEANIKETFWERRADSEKEALFLEHFYLTS 309 + E T E+L + + +A +EK L F T+ Sbjct: 184 AEAAVEQAGKEATEAKEALDKATDATVKAGTDAKAKAEKADNILTKFQGTA 234
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 1435 bits (3715), Expect = 0.0 Identities = 820/1187 (69%), Positives = 925/1187 (77%), Gaps = 137/1187 (11%) Query: 1 MANETIDQTKNPDQTPSQTAFDSQQFINNLQVVFTKVDSAVASFDPDQKPIVDKNDKDNR 60 M NETIDQ Q ++ AF+ QQFINNLQV F KVD+AVAS+DPDQKPIVDKND+DNR Sbjct: 1 MTNETIDQ-----QPQTEAAFNPQQFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNR 55 Query: 61 QAFNGISQLREEYANKAIKNPTKKNQYFSDFISKSNDLINKDNLIDTDSSTKSFQKFGTE 120 QAF GISQLREEY+NKAIKNPTKKNQYFSDFI+KSNDLINKDNLID +SSTKSFQKFG + Sbjct: 56 QAFEGISQLREEYSNKAIKNPTKKNQYFSDFINKSNDLINKDNLIDVESSTKSFQKFGDQ 115 Query: 121 RYQIFMNWVSHQKDPSKINTQKIRNFMENIVQPPISDDKEKAEFLRSAKQSFAGIIIGNQ 180 RY+IF +WVSHQ DPSKINT+ IRNFMENI+QPPI DDKEKAEFL+SAKQSFAGIIIGNQ Sbjct: 116 RYRIFTSWVSHQNDPSKINTRSIRNFMENIIQPPILDDKEKAEFLKSAKQSFAGIIIGNQ 175 Query: 181 IRSDEKFMGVFEESLDESLDESLDESLDESLDESLDESLDESLKEKQEAQNNGDP-GGDW 239 IR+D+KFMGVF DESLKE+QEA+ NG+P GGDW Sbjct: 176 IRTDQKFMGVF----------------------------DESLKERQEAEKNGEPTGGDW 207 Query: 240 LDIFLSFAFDKKQSSDLKETLNQESRPNVEQNIATTPTPIQGLPLEARDLLDERGDFSKF 299 LDIFLSF FDKKQSSD+KE +NQE P+V+ +IATT T IQGLP EARDLLDERG+FSKF Sbjct: 208 LDIFLSFIFDKKQSSDVKEAINQEPVPHVQPDIATTTTDIQGLPPEARDLLDERGNFSKF 267 Query: 300 TLGD-------------PNYKFNQLVVHNNALSSMLMGSHGNIKPEKVSLLYGDNGGPEA 346 TLGD PNYKFNQL++HNNALSS+LMGSH I+PEKVSLLYG NGGP A Sbjct: 268 TLGDMEMLDVEGVADIDPNYKFNQLLIHNNALSSVLMGSHNGIEPEKVSLLYGGNGGPGA 327 Query: 347 RHDWNATVGYKNQQGNNVATLINAHLKNGSGLIIAGNENGINNPSFYLYKKDQLTGLEQA 406 RHDWNATVGYK+QQGNNVAT+IN H+KNGSGL+IAG E GINNPSFYLYK+DQLTG ++A Sbjct: 328 RHDWNATVGYKDQQGNNVATIINVHMKNGSGLVIAGGEKGINNPSFYLYKEDQLTGSQRA 387 Query: 407 LSQEEIQNKLGFMELLAQNNAKLDNLSKEEKEKFQTEIGNFQKDPKAYLDSLGNDRIAFV 466 LSQEEIQNK+ FME LAQNNAKLDNLS++EKEKF+TEI +FQKD KAYLD+LGNDRIAFV Sbjct: 388 LSQEEIQNKIDFMEFLAQNNAKLDNLSEKEKEKFRTEIKDFQKDSKAYLDALGNDRIAFV 447 Query: 467 SKKDNKHLALVTEFGNGELSYTLKDYGKRQDRALDREIKTTLQGNLKDDGVMFVNYSNFK 526 SKKD KH AL+TEFGNG+LSYTLKDYGK+ D+ALDRE TLQG+LK DGVMFV+YSNFK Sbjct: 448 SKKDTKHSALITEFGNGDLSYTLKDYGKKADKALDREKNVTLQGSLKHDGVMFVDYSNFK 507 Query: 527 YTNASKSPNEGIGATNGVSHLEANFSKVAVFNLPKLNGLAVSSFARRNLENKLIAKGFPP 586 YTNASK+PN+G+G TNGVSHLE F+KVA+FNLP LN LA++SF RRNLE+KL KG P Sbjct: 508 YTNASKNPNKGVGVTNGVSHLEVGFNKVAIFNLPDLNNLAITSFVRRNLEDKLTTKGLSP 567 Query: 587 KEASKIIKDFLNSNKELLGKALNFNKAVAEAKNTGNYGGVKKAQKDLEKSIRKRERLEKE 646 +EA+K+IKDFL+SNKEL+GK LNFNKAVA+AKNTGNY VKKAQKDLEKS+RKRE LEKE Sbjct: 568 QEANKLIKDFLSSNKELVGKTLNFNKAVADAKNTGNYDEVKKAQKDLEKSLRKREHLEKE 627 Query: 647 ITKQFESKSGNKNKMEAKAQANSQKDEIFKLINEGAYKEARIIAYDQNLKGIRRELRELF 706 + K+ ESKSGNKNKMEAKAQANSQKDEIF LIN+ A ++AR IAY QNLKGI+REL Sbjct: 628 VEKKLESKSGNKNKMEAKAQANSQKDEIFALINKEANRDARAIAYAQNLKGIKRELS--- 684 Query: 707 DKIENLNKNLKDFGESFDALKSGKNKDFSKAEETLKALESSVKDLGINPEWISKVENLNA 766 DK+EN+NKNLKDF +SFD K+GKNKDFSKAEETLKAL+ SVKDLGINPEWISKVENLNA Sbjct: 685 DKLENVNKNLKDFDKSFDEFKNGKNKDFSKAEETLKALKGSVKDLGINPEWISKVENLNA 744 Query: 767 ALNEFKNGKNKDFSKVTQAKSDLENSIKDVIINQEITDKVDNLNQAVSIAKATGDFSGLD 826 ALNEFKNGKNKDFSKVTQAKSDLENS+KDVIINQ++TDKVDNLNQAVS+AKATGDFS ++ Sbjct: 745 ALNEFKNGKNKDFSKVTQAKSDLENSVKDVIINQKVTDKVDNLNQAVSVAKATGDFSRVE 804 Query: 827 QALAELKNF---------------NVGKNSDRSEPIYATIDDLDGSSPLKR--------- 862 QALA+LKNF N K S+ + + ++ + L + Sbjct: 805 QALADLKNFSKEQLAQQAQKNESLNARKKSEIYQSVKNGVNGTLVGNGLSQAEATTLSKN 864 Query: 863 ----------------------------YAKVDDLSKVGQSDSP-EPIYANLG------- 886 YAKV+ K GQ+ S EPIYA + Sbjct: 865 FSDIKKELNAKLGNFNNNNNNGLKNEPIYAKVNK-KKAGQAASLEEPIYAQVAKKVNAKI 923 Query: 887 ----------------GSSPLKRYAKVDDLSKVGLSREQELTQKIGNLNQAVSEAKAGSF 930 PLKR+ KVDDLSKVGLSR QEL QKI NLNQAVSEAKAG F Sbjct: 924 DRLNQIASGLGVVGQAAGFPLKRHDKVDDLSKVGLSRNQELAQKIDNLNQAVSEAKAGFF 983 Query: 931 GNLEQTMHGLKDSTKKNVVNLWFEGARKVPISLPSSQAKLDNYATNSHTRINSNVKNGTI 990 GNLEQT+ LKDSTK N +NLW E A+KVP SL AKLDNYATNSH RINSN+KNG I Sbjct: 984 GNLEQTIDKLKDSTKHNPMNLWVESAKKVPASL---SAKLDNYATNSHIRINSNIKNGAI 1040 Query: 991 NEKAIGMLTQKNPEWLKLVNDKIVAHNVGSTPLSDYDKIGFNQKDMKGYSDSFKFSTKLS 1050 NEKA GMLTQKNPEWLKLVNDKIVAHNVGS PLS+YDKIGFNQK+MK YSDSFKFSTKL+ Sbjct: 1041 NEKATGMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDKIGFNQKNMKDYSDSFKFSTKLN 1100 Query: 1051 NAVKNIKPGFVQCLTDCISAGSY---SPKKAEHGV----TKSGFQKS 1090 NAVK+ GF Q LT+ S SY + + AEHG+ TK GFQKS Sbjct: 1101 NAVKDTNSGFTQFLTNAFSTASYYCLARENAEHGIKNVNTKGGFQKS 1147
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 38.8 bits (90), Expect = 2e-06 Identities = 19/90 (21%), Positives = 31/90 (34%) Query: 43 VQKLRERGGEFFGMRKDKKLIGICGLNPINKTEAELCKFHMDSAYQSQGLGQKLYESVER 102 V + E G F + IG + A + + Y+ +G+G L Sbjct: 57 VSYVEEEGKAAFLYYLENNCIGRIKIRSNWNGYALIEDIAVAKDYRKKGVGTALLHKAIE 116 Query: 103 YAFVKGYTKISLHVSKSQIKACNLYQKLGF 132 +A + + L I AC+ Y K F Sbjct: 117 WAKENHFCGLMLETQDINISACHFYAKHHF 146
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 34.8 bits (80), Expect = 5e-04 Identities = 35/248 (14%), Positives = 82/248 (33%), Gaps = 48/248 (19%) Query: 6 DRFGRKNMFMLSILLMVIPTFALALMPTFNHFVSFGVDSMGLTPKNAHYLGYIAPVFLIF 65 DRFGR+ + ++S+ + +A P Y+G Sbjct: 68 DRFGRRPVLLVSLAGAAVDYAIMATAPFLWVL----------------YIG--------- 102 Query: 66 VRICQGVAVGGELPGAWVFVYEHAPQGQKNTYIGFLSASVVSGILLGSLVYIGIYMVFDK 125 RI G+ G A ++ + ++ + GF+SA G++ G + +G M Sbjct: 103 -RIVAGIT-GATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPV--LGGLMGGFS 158 Query: 126 PVVEAWAWRVAFGLGGIFGIISVYLRRFLEETPVFQQMKQDNALVKFPLKEVFKNSFFGI 185 P F ++ FL + + PL + Sbjct: 159 P-------HAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTV 211 Query: 186 LISMLITWVLTACI-----LIFILFVPNFTLMHPNFNFTPFEKTY-FQILGLVGIVSSII 239 + +++ + + + ++++F + F++ G++ ++ + Sbjct: 212 VAALMAVFFIMQLVGQVPAALWVIFGED------RFHWDATTIGISLAAFGILHSLAQAM 265 Query: 240 LTGFLADK 247 +TG +A + Sbjct: 266 ITGPVAAR 273
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 396 bits (1018), Expect = e-140 Identities = 106/379 (27%), Positives = 181/379 (47%), Gaps = 26/379 (6%) Query: 2 LKRASFVEVNTASLRHNFSAAKSIVPKDAHIMAVVKANAYGVGAIK-ASEIFLQEGAHYL 60 + R ++ +L+ N S + A + +VVKANAYG G + S I Sbjct: 1 MTRPIQASLDLQALKQNLSIVRQAAT-HARVWSVVKANAYGHGIERIWSAI---GATDGF 56 Query: 61 GVATLDEALELRSYFSKTPILIL-GYSPNSNASMLIDNDLSAMIFSLEQAEVFSQMALKS 119 + L+EA+ LR K PIL+L G+ + + + L+ + S Q + LK+ Sbjct: 57 ALLNLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNARLKA 116 Query: 120 QKRLKIHLKIDTGMHRLGLEPNFKSIETIKKIRALKGLEIEGIFTHLSNADSNIKTHAKN 179 L I+LK+++GM+RLG +P+ + + +++RA+ + + +H + A+ H Sbjct: 117 P--LDIYLKVNSGMNRLGFQPD-RVLTVWQQLRAMANVGEMTLMSHFAEAE-----HPDG 168 Query: 180 QMKAFNAFLEQLSNQKIEFQYRHAYNSAGILSLCNGNENRFLNLYRPGIMLYGFYPSNGM 239 A + + +E + R NSA L + + RPGI+LYG PS Sbjct: 169 ISGAMARIEQAA--EGLECR-RSLSNSAATL----WHPEAHFDWVRPGIILYGASPSGQW 221 Query: 240 KESCPTILKNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGLMRALG 299 ++ T L+ V++L ++I+ ++++K GE +GYG + +E +G++A GYADG R Sbjct: 222 RDIANTGLRPVMTLSSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHAP 281 Query: 300 NRIQVAINNQLAPLIGKVCMDQCFVKLNNI-QAKEGDEVILFGDKSAKANDASEIATLLN 358 V ++ +G V MD V L QA G V L+G K K +D +A Sbjct: 282 TGTPVLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWG-KEIKIDD---VAAAAG 337 Query: 359 TIPYETISTLSKRLERVYI 377 T+ YE + L+ R+ V + Sbjct: 338 TVGYELMCALALRVPVVTV 356
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 31.2 bits (70), Expect = 0.003 Identities = 14/67 (20%), Positives = 28/67 (41%) Query: 57 KLQVSKNEQTLQDANAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQN 116 + QV+ +E + NA I IQK +S++ + R + E + Q N +++ Sbjct: 288 QKQVTASETRINRINADITQIQKAISQVSNNRNAGIARVHEAEENLKKAQNNLLNSQIKD 347 Query: 117 EIKHKSE 123 + Sbjct: 348 AVDATVS 354
>PF07675#Cleaved Adhesin Length = 1358 Score = 32.0 bits (72), Expect = 0.002 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 6/59 (10%) Query: 29 NVGSENHEFSEIIACLEITLKIALNAPKNALIITHHPLIFKPLKTLNDEAYPDNILKIL 87 V + NHE+ C+E+ A +PK + +T +P F P++ L E P+++ IL Sbjct: 1017 GVATGNHEY-----CVEVKY-TAGVSPKECVNVTINPTQFNPVQNLTAEQAPNSMDAIL 1069
>PF04605#Virulence-associated protein D (VapD) Length = 125 Score = 142 bits (359), Expect = 1e-47 Identities = 30/90 (33%), Positives = 45/90 (50%) Query: 3 AVTFDLDTNCLNENAVNLSKVYSDIRKFMEQHGFKWQQGSVYFGDETINAVTCVATVQIL 62 A+ FDL T L + + + YS I+KFM ++GF+ +Q S Y E IN + V L Sbjct: 7 AINFDLSTKSLEKYFKDTREPYSLIKKFMLENGFEHRQYSGYTSKEPINERRVIRIVNKL 66 Query: 63 AKQIPSFAICVKDVRMLKIEENNDLMPAIK 92 K+ CVK+ + +I E L I+ Sbjct: 67 TKKFTWLGECVKEFDITEIGEQYSLKETIQ 96
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 754 bits (1949), Expect = 0.0 Identities = 226/1045 (21%), Positives = 465/1045 (44%), Gaps = 44/1045 (4%) Query: 5 IIEFSLRQRIIVIVCAILVLFFGTYSFINTPVDAFPDISPTQVKIILKLPGSSPEEMENN 64 + F +R+ I V AI+++ G + + PV +P I+P V + PG+ + +++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 65 IVRPLELELLGLKGQKSLRSISKYSIS-DITIDFDDSVDIYLARNIVNERLSSVMKDLPI 123 + + +E + G+ + S S + S IT+ F D +A+ V +L LP Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 124 GVEGGMAPIVTPLSDIFMF----TIDGNITEIEKRQLLDFVIRPQLRMISGVADVNSIGG 179 V+ + S M + + T+ + + ++ L ++GV DV G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 180 FSRAFVIVPDFNDMARLGISISDLEEAVRVNLRNSGAGRVDR----DGETFLVKI--QTA 233 A I D + + + ++ D+ ++V AG++ G+ I QT Sbjct: 181 -QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 234 SLSLEDIGKITV--STNLGHLHIKDFAKVISQSRTRLGFVTKDGVGETTEGLVLSLKDAN 291 + E+ GK+T+ +++ + +KD A+V +G + AN Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGK-PAAGLGIKLATGAN 298 Query: 292 TKEIIAQVYQKLEELKPFLPSGVSINVFYDRSEFTQKAIATVSKTLIEAVVLIVITLFLF 351 + + KL EL+PF P G+ + YD + F Q +I V KTL EA++L+ + ++LF Sbjct: 299 ALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLF 358 Query: 352 LGNLRASVAVGVILPLSLSVAFIFIKLSDLTLNLMSLGGLIIAIGMLIDSAVVVVENAFE 411 L N+RA++ + +P+ L F + ++N +++ G+++AIG+L+D A+VVVEN E Sbjct: 359 LQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV-E 417 Query: 412 KLSSNTKTTKLHAIYRSCKEIAVSVVSGVVIIIVFFVPILTLHGLEGKMFRPLAQSIVYA 471 ++ K A +S +I ++V +++ F+P+ G G ++R + +IV A Sbjct: 418 RVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSA 477 Query: 472 LLGTLVLSITIIPVVSSLVLK--ATPHSET---FLTRFLNRIYAPLLEFFVHNPKKVI-- 524 + ++++++ + P + + +LK + H E F F N + + + ++ K++ Sbjct: 478 MALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWF-NTTFDHSVNHYTNSVGKILGS 536 Query: 525 ----LGAFVFLTA-SLSLFPFVGKNFMPALDEGDVVLSVETTPSISLDQSRDLMLNIESA 579 L + + A + LF + +F+P D+G + ++ + ++++ ++ + Sbjct: 537 TGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDY 596 Query: 580 IKKHV-KEVKSIVARTGSDELGLDLGGLNQTDTFISFIPKKEWSVKTKDELL-EKIMDSL 637 K+ V+S+ G G + ++F+ K W + DE E ++ Sbjct: 597 YLKNEKANVESVFTVNGFSFSG------QAQNAGMAFVSLKPWEERNGDENSAEAVIHRA 650 Query: 638 K-DFKGINFSFTQPIEM-RISEMLTGVRGDLA-VKIFGDDISELNKLSFQIAQVL-KGIK 693 K + I F P M I E+ T D + G L + Q+ + + Sbjct: 651 KMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPA 710 Query: 694 GSSEVLTTLNEGVNYLCVTPNKEAMANVGITSDEFSKFLKSALEGLVVDVIPTGISRTPV 753 V E + ++E +G++ + ++ + +AL G V+ + Sbjct: 711 SLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKL 770 Query: 754 MIRQESDFASSITKIKSLALTSKYGVLVPITSIAKIEEVDGPVSVVRENSMRMSVVRSNV 813 ++ ++ F + L + S G +VP ++ V G + R N + ++ Sbjct: 771 YVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEA 830 Query: 814 VGRDLNSFVEEAKKVIAQNIKLPLSYYITYGGQFENQQRANKRLSTVIPLSILAIFFILF 873 + + +A KLP + G ++ + + ++ +S + +F L Sbjct: 831 APGTSSGDAMALMENLAS--KLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLA 888 Query: 874 FTFKSIPLALLILLNIPFAVTGGLIALFAVGEYISVPASVGFIALFGIAVLNGVVMIGYF 933 ++S + + ++L +P + G L+A + V VG + G++ N ++++ + Sbjct: 889 ALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFA 948 Query: 934 KELLL-QGKSVEECVLLGAKRRLRPVLMTACIAGLGLIPLLFSHSVGSEVQKPLAIVVLG 992 K+L+ +GK V E L+ + RLRP+LMT+ LG++PL S+ GS Q + I V+G Sbjct: 949 KDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMG 1008 Query: 993 GLVTSSALTLLLLPPMFMLIAKKIK 1017 G+V+++ L + +P F++I + K Sbjct: 1009 GMVSATLLAIFFVPVFFVVIRRCFK 1033
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 809 bits (2092), Expect = 0.0 Identities = 224/1062 (21%), Positives = 451/1062 (42%), Gaps = 73/1062 (6%) Query: 5 IIDLSVKNKLLTTLVTLLIFLASLWAIKSVRLDALPDLSPAQVVVQITYPNQSPKVVQEQ 64 + + ++ + ++ +++ +A AI + + P ++P V V YP + VQ+ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 65 VTYPLVSTFMSIANIDTVRGIS-SYESGLIYIIFKDGVNLYWARDRVLEQLNRALN-LPK 122 VT + I N+ + S S S I + F+ G + A+ +V +L A LP+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 123 DAKV-EIGSDSTSIGWAYQYALSSDSKNLS--DLKVLQDFYYRYALLGVDGVSEVASVGG 179 + + I + +S + SD+ + D+ + L ++GV +V G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 180 FVKDYEVTLQNDSLIRYNLSLEQVANAIKNSNNDTGGGVI------LENGFEKIIRSHGY 233 + L D L +Y L+ V N +K N+ G + I + Sbjct: 181 -QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 234 IQSLKDLEEIVVK-KEGAIPLKIKDIASVRLTPKPRRGAANLNGDKEVVGGIVMVRYHAD 292 ++ ++ ++ ++ +++KD+A V L + A +NG K G + + A+ Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARING-KPAAGLGIKLATGAN 298 Query: 293 TYKVLKAIKEKIATLQASNP-DVKITSVYDRSELIEKGIDNLIHTLIEESVIVLVIIAIF 351 KAIK K+A LQ P +K+ YD + ++ I ++ TL E ++V +++ +F Sbjct: 299 ALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLF 358 Query: 352 LLHFRSALVVIITLPLSVCISFLLMRYFNIEASIMSLGGIAIAIGAMVDAAIVMVENAHK 411 L + R+ L+ I +P+ + +F ++ F + +++ G+ +AIG +VD AIV+VEN + Sbjct: 359 LQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER 418 Query: 412 HLQHIDVKDNAQRVNAIMQGVKHVGGAIFFALMIIVVSFLPIFALTGQEEKLFAPLAYTK 471 + +D A + + + GA+ M++ F+P+ G ++ + T Sbjct: 419 VMM----EDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITI 474 Query: 472 TFAMLVGALLSITMVPILMVWLIKGRILEESKNPINAFF----------MKIYGVSLNVV 521 AM + L+++ + P L L+K E +N FF + Y S+ + Sbjct: 475 VSAMALSVLVALILTPALCATLLKPVSAEHHENK-GGFFGWFNTTFDHSVNHYTNSVGKI 533 Query: 522 LKFRYAFLIASVVGLGGLYVAYQKLNWEFIPQINEGVIMYMPVTINGVGID-------TA 574 L +L+ + + G+ V + +L F+P+ ++GV + M G + Sbjct: 534 LGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQV 593 Query: 575 LEYLKKSNSAIKRLDFVKQVFGKVGRANTSTDAAGLAMIETYIELKPQNEWKEKLSYKEV 634 +Y K+ A F F G+A + A ++ LKP W+E+ + Sbjct: 594 TDYYLKNEKANVESVFTVNGFSFSGQAQNAGMA--------FVSLKP---WEERNGDENS 642 Query: 635 RDKL--EKTLQLKGLTNSWTYPIRGRTDMLLTGIRTPLGIKL-------YGNDTDKLQEL 685 + + ++L + + + P + L G T +L + T +L Sbjct: 643 AEAVIHRAKMELGKIRDGFVIPFNMPAIVEL-GTATGFDFELIDQAGLGHDALTQARNQL 701 Query: 686 AILMEQQLKTLKESLSVFAERSNNGYYITLDLNDENLARYGINKNAVLDTIKFALGGTTL 745 + Q +L +SV + L+++ E G++ + + TI ALGGT + Sbjct: 702 LGMAAQHPASL---VSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYV 758 Query: 746 TTMIKGVENYPISLRLEDTERNTIEKLQNLYIKTAYNYM-PLRELAHVYYDNSPAVLKSE 804 I + ++ + R E + LY+++A M P ++ L+ Sbjct: 759 NDFIDRGRVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERY 818 Query: 805 KGLNVNFIYIVPQANISSDTYRQLAQKALEKIKLPSGYYYEFSGESQYLEEAFKTLQYIV 864 GL I SS L + KLP+G Y+++G S + +V Sbjct: 819 NGLPSMEIQGEAAPGTSSGDAMALMENLAS--KLPAGIGYDWTGMSYQERLSGNQAPALV 876 Query: 865 PVSVFIIFILIVFALKNLTNSLLCFFTLPFAFLGGLIFMNIMGFNMSVAALVGFLALLGV 924 +S ++F+ + ++ + + +P +G L+ + V +VG L +G+ Sbjct: 877 AISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGL 936 Query: 925 ASETAIVMIIYLEDAFQKFIKTPLKEQNSAALKEAIMHGAVLRVRPKLMTFFSILASLIP 984 +++ AI+++ + +D L E+ + EA + +R+RP LMT + + ++P Sbjct: 937 SAKNAILIVEFAKD---------LMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLP 987 Query: 985 IMYSHGTGSEIMKSIAAPMLGGMISSVVLTLFIIPTAYFVIK 1026 + S+G GS ++ ++GGM+S+ +L +F +P + VI+ Sbjct: 988 LAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFVVIR 1029
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 27.9 bits (62), Expect = 0.035 Identities = 17/88 (19%), Positives = 41/88 (46%), Gaps = 6/88 (6%) Query: 144 FGSLVGSLVGTHFSFD---TQGMEFVMTAIFIVLFMEQYKRNTNHKN--AWLGIFIAVVC 198 G +G ++ + + M ++T F++ +++ R H + + + + +V Sbjct: 154 VGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKEVRIKGHFDIKGIILMSVGIVF 213 Query: 199 LALFGTEYFLLIALVLMVLALILFKKQL 226 LF T Y + L++ VL+ ++F K + Sbjct: 214 FMLFTTSYSISF-LIVSVLSFLIFVKHI 240
>cloacin#Cloacin signature. Length = 551 Score = 35.1 bits (80), Expect = 5e-04 Identities = 22/99 (22%), Positives = 48/99 (48%), Gaps = 9/99 (9%) Query: 28 AKLSRSNEQLSDMLYKLNESLRIYQSVLSNNQDQL----KEIKKANSTLNSQRRFFNASQ 83 ++L +N+ L+D + ++ + R ++ + ++A + +N+++ F+A+ Sbjct: 356 SELDAANKTLADAIAEIKQFNRFAHDPMAGGHRMWQMAGLKAQRAQTDVNNKQAAFDAAA 415 Query: 84 IRLMDTDALLKQSALELEKLQALEKRLKERMEQERLIEE 122 D DA L SA+E K +K K+R + L +E Sbjct: 416 KEKSDADAAL-SSAMESRK----KKEDKKRSAENNLNDE 449
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 44.4 bits (105), Expect = 2e-08 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 4/71 (5%) Query: 11 ALYGGSFDPLHKAHLAIIDQTLELLPSAKLIVLPAYQNPFKKPCFLDAQTRFKELERALK 70 A+Y GSFDP+ HL II++ L ++ V +NP K+P F Q R +++ +A+ Sbjct: 3 AIYPGSFDPITFGHLDIIERGCRLFD--QVYVAVL-RNPNKQPMF-SVQERLEQIAKAIA 58 Query: 71 GMDRVLLSDFE 81 + + FE Sbjct: 59 HLPNAQVDSFE 69
>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE signature. Length = 103 Score = 77.0 bits (189), Expect = 6e-22 Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 1/77 (1%) Query: 34 EQKGGEFSKLLKQSINELNNTQEQSDKALADMATGQIK-DLHQAAIAIGKAETSMKLMLE 92 Q F+ L +++ +++TQ + G+ L+ + KA SM++ ++ Sbjct: 27 PQPTISFAGQLHAALDRISDTQTAARTQAEKFTLGEPGVALNDVMTDMQKASVSMQMGIQ 86 Query: 93 VRNKAISAYKELLRTQI 109 VRNK ++AY+E++ Q+ Sbjct: 87 VRNKLVAAYQEVMSMQV 103
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 28.8 bits (64), Expect = 0.011 Identities = 10/38 (26%), Positives = 15/38 (39%) Query: 121 NVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAIGM 158 VN E +L + Y AN Q+A + I + Sbjct: 508 GVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 36.8 bits (85), Expect = 8e-05 Identities = 30/183 (16%), Positives = 78/183 (42%), Gaps = 10/183 (5%) Query: 108 NVELLKKLSPDLVVTFVG-NPKAVEHAKKFGISFLSFQETT--IAEAMQAMQ--AQAAVL 162 N+ELL ++ P +V G P A+ +F + +A A +++ A L Sbjct: 88 NLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNL 147 Query: 163 EIDASKKFAKMQETLDFIKERL-KDVKKKKGVELFHKAN--KISGHQAISSDILEKGGID 219 + A A+ ++ + +K R K + + + G ++ +IL++ GI Sbjct: 148 QSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGIP 207 Query: 220 N-FGLKYVKFGRADVSVEKIVK-ENPEIIFIWWVSPLTPEEVLNNPKFSTIKAIKNKQVY 277 N + + +G VS++++ ++ +++ + + ++ P + + ++ + Sbjct: 208 NAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGRFQ 267 Query: 278 KLP 280 ++P Sbjct: 268 RVP 270
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 33.4 bits (76), Expect = 9e-04 Identities = 31/183 (16%), Positives = 74/183 (40%), Gaps = 10/183 (5%) Query: 106 NVELLKKLSPDLVVTFVGNPKAVEHAKKF--GISFLSFQEKTIAEVMEDID---AQAKAL 160 N+ELL ++ P +V G + E + G F K + A L Sbjct: 88 NLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNL 147 Query: 161 EIDASKKLAKMQETLDFIKERL-KDVKKKKGVELFHKAN--KISGHQALDSDILEKGGID 217 + A LA+ ++ + +K R K + + + G +L +IL++ GI Sbjct: 148 QSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGIP 207 Query: 218 N-FGLKYVKFGRADVSVEKIVK-ENPEIIFIWWISPLTPEDVLNNPKFATIKAIKNKQVY 275 N + + +G VS++++ ++ +++ + + ++ P + + ++ + Sbjct: 208 NAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGRFQ 267 Query: 276 KLP 278 ++P Sbjct: 268 RVP 270
>TYPE3IMPPROT#Type III secretion system inner membrane P protein family signature. Length = 224 Score = 29.0 bits (65), Expect = 0.043 Identities = 9/21 (42%), Positives = 12/21 (57%) Query: 6 YKLLLFVFIGFWGLLVLNLFI 26 KL+LFV + W LL L + Sbjct: 197 IKLVLFVALDGWTLLSKGLIL 217