>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 51.2 bits (122), Expect = 8e-09 Identities = 31/232 (13%), Positives = 61/232 (26%), Gaps = 22/232 (9%) Query: 202 LLEDFKKNEAVLTAELKQKQAQAKKIEGEIRKIINEEIAAAKAKEEAERKARLERERLAR 261 + T Q + E ++E A E + Sbjct: 987 KRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQ 1046 Query: 262 EAAAREKARIDAENKARAEALERERKKAEAEAARLAEIERKKQDDARKQAELAKAEENAR 321 E+ EK DA E + R+ A+ + + + E+A++ + Sbjct: 1047 ESKTVEKNEQDAT-----ETTAQNREVAKEAKSNV--------KANTQTNEVAQSGSETK 1093 Query: 322 NEARRIAAEKDAREAAARAKA-AEEKAKAARDAEAELAKRK--EEEKKKAEEKTKTAFGV 378 E E +AK E+ + + K++ E + +AE + Sbjct: 1094 ETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPAREN---- 1149 Query: 379 GAATGSNFAENRGRIGFPVERGQVTHRFGRQPHPVFKNIVEENNGIRIAVSP 430 N E + + + Q N G + +P Sbjct: 1150 --DPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENP 1199 Score = 40.0 bits (93), Expect = 3e-05 Identities = 23/144 (15%), Positives = 40/144 (27%), Gaps = 12/144 (8%) Query: 226 KIEGEIRKIINEEIAAAKAKEEAERKARLERERLAREAAAREKARIDAENKARAEALERE 285 ++E + + I + E +AR A A E + Sbjct: 984 EVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAEN 1043 Query: 286 RKKAEAEAARLAEIERKKQDDARKQAELAKAEENARNEARRIAAEKDAREAAARAKAAEE 345 K+ E + + Q E + +A E A++ E Sbjct: 1044 SKQESKTV----EKNEQDATETTAQNREVAKEAKSNVKANTQTNEV--------AQSGSE 1091 Query: 346 KAKAARDAEAELAKRKEEEKKKAE 369 + E A ++EEK K E Sbjct: 1092 TKETQTTETKETATVEKEEKAKVE 1115 Score = 36.2 bits (83), Expect = 4e-04 Identities = 21/197 (10%), Positives = 63/197 (31%), Gaps = 12/197 (6%) Query: 162 AEIQQALKLKQKSVKEKENILTQQQKDLLVIQNDRKQRELLLEDFKKNEAVLTAELKQKQ 221 A Q + S E + T + K+ ++ + K + + + +T+++ KQ Sbjct: 1078 ANTQTNEVAQSGS--ETKETQTTETKETATVEKEEKAKVETEK--TQEVPKVTSQVSPKQ 1133 Query: 222 AQAKKIEGEIRKIINEEIAAAKAKEEAERKARLERERLAREAAAREKARIDAENKARAEA 281 Q++ ++ + + + +++ + E+ A+E ++ + + Sbjct: 1134 EQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGN 1193 Query: 282 LERERKKAEAEAARLAEIERKKQDDARKQAELAKAEENARNEARRIAAEKDAREAAARAK 341 E + A Q ++ + R+ + A ++ Sbjct: 1194 SVVENPENTTPAT--------TQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRS 1245 Query: 342 AAEEKAKAARDAEAELA 358 + + A L+ Sbjct: 1246 TVALCDLTSTNTNAVLS 1262 Score = 34.7 bits (79), Expect = 0.001 Identities = 24/127 (18%), Positives = 46/127 (36%), Gaps = 6/127 (4%) Query: 253 RLERERLAREAAAREKARIDAENKARAEALERERKKAEAEAARLAEIERKKQDDARKQAE 312 L + + + I N +A+ E A + + E Sbjct: 979 DLYNPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTE 1038 Query: 313 LAKAEENARNEARRIA-AEKDAREAAARAKAAEEKAKAARDAE---AELAKRKEEEKKKA 368 EN++ E++ + E+DA E A+ + ++AK+ A E+A+ E K+ Sbjct: 1039 T--VAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQ 1096 Query: 369 EEKTKTA 375 +TK Sbjct: 1097 TTETKET 1103
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 33.2 bits (76), Expect = 7e-04 Identities = 42/228 (18%), Positives = 79/228 (34%), Gaps = 49/228 (21%) Query: 7 LIASLFKEADLDNVIFFASR--VSNSLE-------TSLAQFQREEELVRRTMEENLDKIF 57 + LF + V R V SLE ++L F E R ++L Sbjct: 66 GMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL---- 121 Query: 58 LYFSTCSIYDSSKA------------ESPYVLHKLKMEQVVVETCSQYLI----LRLSNV 101 LY S+ S+Y ++ S Y K E + Y + LR V Sbjct: 122 LYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFFTV 181 Query: 102 VGKGGNPNLLMNYLVNSVKRGEVINV--HTKATRNLIDAED-VKAVVFNLLKQKQLN--- 155 G G P++ + ++ G+ I+V + K R+ +D +A++ + Sbjct: 182 YGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPHADTQW 241 Query: 156 --------------RVVNLAYIDNYTIIEILEILESVIKLKPNLNLIK 189 RV N+ +++ ++ LE + ++ N++ Sbjct: 242 TVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLP 289
>PF05704#Capsular polysaccharide synthesis protein Length = 307 Score = 48.0 bits (114), Expect = 1e-08 Identities = 31/151 (20%), Positives = 59/151 (39%), Gaps = 16/151 (10%) Query: 1 MIPKKIHYCWF-GRGEKSDFIKFCIDSWKKIQPDFEIIEWNEDNFDVY-GIPFTKEAYMQ 58 M K I CW G + ++ C+ S KK DF++I + +N+ + IP Q Sbjct: 66 MRQKYIFICWLQGIEKAPYIVQQCVASVKKNSGDFKVIIIDGNNYKEWVDIPDFLIKRWQ 125 Query: 59 KK---WAFVSDYARAKALYEHGGFYLDTDMELRLPLNDFLQHRAVCGFEMKGIPYSA--- 112 + A+ SD R L ++GG ++D + + + +++ F+ + Sbjct: 126 EGKMLDAWFSDILRLFLLCKYGGLWIDATVYMFDKVPNYIVESNRFMFQSSFLESETTHI 185 Query: 113 ----FWAVEKGH----ELAKDIKEYYENKDK 135 + K L + Y + K+K Sbjct: 186 SNWLIFVKSKNDPFLVGLKNSMVTYLKKKEK 216
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 28.8 bits (64), Expect = 0.027 Identities = 14/45 (31%), Positives = 21/45 (46%) Query: 175 GLPGLILKIEDTKKQFLFEAVALQALNSFQVWEKAKPVNTSKKKY 219 + G+I I + KQ +FE VA + + WEK N + Y Sbjct: 401 AVTGIISGILEASKQAMFEHVASKMADVIAEWEKKHGKNYFENGY 445
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 151 bits (382), Expect = 8e-50 Identities = 47/140 (33%), Positives = 75/140 (53%) Query: 17 ITEKLNILLANYSIFYQNTRGAHWNIKGADFFTLHPKFEELYDSLVLKIDEIAERILTLG 76 + LN L+N+ + Y HW +KG FFTLH KFEELYD +D IAER+L +G Sbjct: 13 VENSLNTQLSNWFLLYSKLHRFHWYVKGPHFFTLHEKFEELYDHAAETVDTIAERLLAIG 72 Query: 77 ATPNHNYSDYLKVSSIKESKEVTDGNKCVEQILEAFKIVIDLQREILEIAGEAGDEGTNS 136 P +Y + +SI + T ++ V+ ++ +K + + ++ +A E D T Sbjct: 73 GQPVATVKEYTEHASITDGGNETSASEMVQALVNDYKQISSESKFVIGLAEENQDNATAD 132 Query: 137 QMSDYIKEQEKEVWMYNAFL 156 I+E EK+VWM +++L Sbjct: 133 LFVGLIEEVEKQVWMLSSYL 152
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 31.6 bits (71), Expect = 0.010 Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%) Query: 48 LKNWISKTKDL-EQSLNLEKEHYKAKTTENESLKDSLSKTSATLETAHSQVEELKTQLQT 106 +K+++S K+L ++LN K AK T N D + K LE + + E L+ +++ Sbjct: 574 IKDFLSSNKELVGKTLNFNKAVADAKNTGN---YDEVKKAQKDLEKSLRKREHLEKEVEK 630 Query: 107 QTLNLTQLQEKNQHYYAKISELSAKNETLEQSLVNQKKEIQELQEATKLQFENIANKILE 166 L AK S K+E +L+N++ ++A + + I Sbjct: 631 ---KLESKSGNKNKMEAKAQANSQKDEIF--ALINKEAN----RDARAIAYAQNLKGIKR 681 Query: 167 EKTEKFTSLNKENLGHILKPFQEKITELKNTVHETYDKEAKERFSLGAKVKELA 220 E ++K ++NK LK F + E KN ++ + K + +L VK+L Sbjct: 682 ELSDKLENVNKN-----LKDFDKSFDEFKNGKNKDFSKAEETLKALKGSVKDLG 730
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 51.1 bits (122), Expect = 1e-10 Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 7/96 (7%) Query: 53 EELQDEFSEFYFARVDGVLAGYLKLNFGVSQTELKDPKAIEIERIYVLKAFQGKRVGQAL 112 +++E + ++ G +K+ + L IE I V K ++ K VG AL Sbjct: 58 SYVEEEGKAAFLYYLENNCIGRIKIRSNWNGYAL-------IEDIAVAKDYRKKGVGTAL 110 Query: 113 YEHALQLARDRGVDYIWLGVWEQNHKAIRFYEKNGF 148 A++ A++ + L + N A FY K+ F Sbjct: 111 LHKAIEWAKENHFCGLMLETQDINISACHFYAKHHF 146
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 30.6 bits (69), Expect = 0.022 Identities = 15/92 (16%), Positives = 33/92 (35%), Gaps = 7/92 (7%) Query: 563 NQNGEKYFVAYAEPKRSFEVVPKLMPDGEKEQAQKDMQVAELEYQRDLQLLRDLEKKTGI 622 +QN + Y+ Y + K+S E + + E+E + + + + +++ Sbjct: 380 SQNVQSYYKKYNKLKKSEEAANEQLLQNEEELNYLYSVLTNINNADNYDEIEEIK----- 434 Query: 623 STERLIAEQEMAVKTQNINSKKLNIKADRGES 654 + LI + K + K K S Sbjct: 435 --KELIETGYIKFKKIYKSKKSKTSKPMHFIS 464
>TYPE3OMGPROT#Type III secretion system outer membrane G protein family signature. Length = 607 Score = 28.7 bits (64), Expect = 0.009 Identities = 18/105 (17%), Positives = 40/105 (38%), Gaps = 13/105 (12%) Query: 50 DTFHDVLQQFNAEFTLSLVVKAGDTSSLTEENRREQAMAYLDLSEKIYSKLQGYEDGHF- 108 ++ D+L F A + ++VV ++ + + +L +Y+ L Y DG+ Sbjct: 43 ESLRDLLTDFGANYDATVVVSDKINDKVSGQFEHDNPQDFLQHIASLYN-LVWYYDGNVL 101 Query: 109 ----------ETFTFQSASEPNLRKGLKIVAL-RYSCGWKQEATK 142 Q + L++ L+ + GW+ +A+ Sbjct: 102 YIFKNSEVASRLIRLQESEAAELKQALQRSGIWEPRFGWRPDASN 146
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 28.1 bits (62), Expect = 0.015 Identities = 16/81 (19%), Positives = 35/81 (43%), Gaps = 5/81 (6%) Query: 1 MAKKGRLSNKEREQK-KEYAKILFLQE--KNITIKDLAERVGVSVNTLSEWIKAEKWEGL 57 MA+K + +E Q + A LF Q+ + ++ ++A+ GV+ + K + L Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDK--SDL 58 Query: 58 RRNILLTRQEQLVQMQDELAE 78 I + + +++ E Sbjct: 59 FSEIWELSESNIGELELEYQA 79
>THERMOLYSIN#Thermolysin metalloprotease (M4) family signature. Length = 544 Score = 33.1 bits (75), Expect = 8e-04 Identities = 25/160 (15%), Positives = 50/160 (31%), Gaps = 15/160 (9%) Query: 59 TVFKEKVVETTNEKQL-AIGKTYADSLEQALKMSIKKID--QVSKINAELVARLQLREFT 115 +V N+ +L ++ T +L++ + I Q I + VA Sbjct: 101 LCMGAVLVAHVNDGELSSLSGTLIPNLDKRTLKTEAAISIQQAEMIAKQDVADRVT---- 156 Query: 116 QPNGDKILSHNDKYLNLNYYPQTDSVDFRYNIRLNEARYKDKKWLFGKTNHYIDIWSDDP 175 ++ + K L YP ++ Y + + W++ ID Sbjct: 157 ---KERPAAEEGKPTRLVIYPDEETPRLAYEVNVRFLTPVPGNWIY-----MIDAADGKV 208 Query: 176 RVQINGLKSYRIRGQPLPRWGLGVHAGYGISLNNGILQTT 215 + N + + G V G G+ + + TT Sbjct: 209 LNKWNQMDEAKPGGAQPVAGTSTVGVGRGVLGDQKYINTT 248
>PF07132#Harpin protein (HrpN) Length = 356 Score = 35.8 bits (82), Expect = 0.001 Identities = 25/105 (23%), Positives = 37/105 (35%) Query: 949 QSKGITNVSDELKQLEEVNMKLKDILAKKFAKVSEVAGQLGGAFSELGGALKEYDEGLGD 1008 Q+ G + S Q + +L DI+ S + G LGG LG +L GL Sbjct: 30 QNGGSPSQSAFGGQRSNIAEQLSDIMTTMMFMGSMMGGGLGGGLGGLGSSLGGLGGGLLG 89 Query: 1009 TVESMGELLNVASDVAGALADFASGPQGIVSGIMKTIKAITSIFS 1053 G ++ S + AL G G M + S+ Sbjct: 90 GGLGGGLGSSLGSGLGSALGGGLGGALGAGMNAMNPSAMMGSLLF 134
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 30.5 bits (68), Expect = 0.033 Identities = 39/180 (21%), Positives = 74/180 (41%), Gaps = 30/180 (16%) Query: 513 SQISFSKKEKKNKTAEDKF--SILDL-------EDLNLVEKYRSLVSAVISEIAQSYDDT 563 S I + K +KNKT ++KF SI +L E L+ +++ + L+ + ++ + Y + Sbjct: 41 SDIKRNHKTEKNKTEKEKFKDSINNLVKTEFTNETLDKIQQTQDLLKKIPKDVLEIYSEL 100 Query: 564 INGLRQADMAKLEKAHKTVLDLEEHGNKLRSKSIKYIKGLSSGDRDTSEVLLLSSDFVQD 623 + D+ +E HK + DL E K+ +G E + +S FV + Sbjct: 101 GGEIYFTDIDLVE--HKELQDLSEE-----EKNSMNSRG---------EKVPFASRFVFE 144 Query: 624 LTQSAKSLSNECLFYVKNLHQLTDIEF----IKELDILETKMNQFFNHILVSLEQPENES 679 + L Y N Q ++ + LDI+ +K L ++ ++S Sbjct: 145 KKRETPKLIINIKDYAINSEQSKEVYYEIGKGISLDII-SKDKSLDPEFLNLIKSLSDDS 203
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 35.7 bits (82), Expect = 2e-04 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 8/90 (8%) Query: 6 NTIKIGTR--NSPLALWQAKEVAAALEQKNYATEIVPIVSSGDKNLTQPLYSLGITGVFT 63 T +IG+ N L+ +A+ V L K + + G+ N P+ V Sbjct: 260 YTDRIGSDAYNQGLSERRAQSVVDYLISKGIPADKISARGMGESN---PVTGNTCDNVKQ 316 Query: 64 KDLDIALL--NKQIDIAVHSLKDVPTQLPQ 91 + I L +++++I V +KDV TQ PQ Sbjct: 317 RAALIDCLAPDRRVEIEVKGIKDVVTQ-PQ 345
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 27.6 bits (61), Expect = 0.006 Identities = 9/33 (27%), Positives = 20/33 (60%) Query: 37 LIISFVNIFPKFEGRGLGKALIREAISFAREHQ 69 +I + + + +G+G AL+ +AI +A+E+ Sbjct: 90 ALIEDIAVAKDYRKKGVGTALLHKAIEWAKENH 122
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 67.3 bits (164), Expect = 2e-14 Identities = 32/167 (19%), Positives = 57/167 (34%), Gaps = 32/167 (19%) Query: 120 PTGLGSGVIISPDGYIISNNHVVAGASKLEVTLS------------NKKTYVAKLIGSDP 167 T + SGV++ D +++N HVV L N ++ Sbjct: 100 GTFIASGVVVGKD-TLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSG 158 Query: 168 STDIALLKIED--------SGLPYLNFANSDLLEVGQWVVAVGNPLGLNSTVTAGIVSAK 219 D+A++K + +N+ +V Q + G P A + +K Sbjct: 159 EGDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYPGDKPV---ATMWESK 215 Query: 220 GRSIDLLRQQSKTPIESFIQTDAVINRGNSGGALVNLSGDLVGINSA 266 G+ L +Q D GNSG + N +++GI+ Sbjct: 216 GKITYL--------KGEAMQYDLSTTGGNSGSPVFNEKNEVIGIHWG 254
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 41.9 bits (98), Expect = 1e-06 Identities = 38/190 (20%), Positives = 62/190 (32%), Gaps = 11/190 (5%) Query: 86 ILEQPKEETPPPPPPPKVEEEKIEIIQNVVPEPVKAPTVETPPPPISKQLETTTGLVNQE 145 ++ E P PP + E +PEP K V P + V + Sbjct: 54 MVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPK--PKPKPVKKV 111 Query: 146 GVKKPSYAPPPPPPSTGKGTTVEVKPQVSTTEVYTTVDQEAEFSGGGINGFRSAFQESFD 205 K P P++ T +P ST + G + Sbjct: 112 EQPKRDVKPVESRPASPFENTAPARPTSSTAT--AATSKPVTSVASGPRALSRNQPQYPA 169 Query: 206 TSVMEGDEGTLKAEVTFVVERDGSLSQVKVTGS--NSTFNREAERAVKSIKKKWTPGKVN 263 + EG +K V F V DG + V++ + + F RE + A++ ++ PGK Sbjct: 170 RAQALRIEGQVK--VKFDVTPDGRVDNVQILSAKPANMFEREVKNAMRR--WRYEPGKPG 225 Query: 264 GE-PVRSRFR 272 V F+ Sbjct: 226 SGIVVNILFK 235
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 45.2 bits (107), Expect = 8e-07 Identities = 39/159 (24%), Positives = 66/159 (41%), Gaps = 35/159 (22%) Query: 169 LAAEGKLDPVIGRDEEIRRVLQILSR--RTKNNPILIGEPGVGKTAIAEGIAHR------ 220 P++GR ++ + ++L+R +T ++ GE G GK +A + H Sbjct: 130 EDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARAL-HDYGKRRN 188 Query: 221 -----IISGDVPENLMDKTLYSLDMGALV-AGAKYKGEFEERLKSVVNEVTKSDGQIILF 274 I +P +L++ L+ + GA A + G FE+ ++G LF Sbjct: 189 GPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQ-----------AEGG-TLF 236 Query: 275 IDEIHTLVGAGGGEGAMDAANILKPALARGELRAIGATT 313 +DEI G+ MDA L L +GE +G T Sbjct: 237 LDEI--------GDMPMDAQTRLLRVLQQGEYTTVGGRT 267 Score = 40.6 bits (95), Expect = 2e-05 Identities = 37/182 (20%), Positives = 64/182 (35%), Gaps = 30/182 (16%) Query: 546 KLLQSEREKLLHLEDELHKR--VVGQEEAIEAVANAIRRNRAGLNDEKKPIGSFLFLGTT 603 + L + + LED+ +VG+ A++ + + R L + + G + Sbjct: 117 RALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLAR----LMQTDLTL---MITGES 169 Query: 604 GVGKTELAKALAEFLFDDENNMTRIDMSEYQERHSVSRLVGAPPGYVGYDEGGQLTEAVR 663 G GK +A+AL ++ I+M+ S L G E G T A Sbjct: 170 GTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGH--------EKGAFTGAQT 221 Query: 664 RRPYSV-------VLLDEIEKAHPDVFNTLLQVLDDG---RLTDNKGRVVNFKNTIVIMT 713 R + LDEI D LL+VL G + + + ++ Sbjct: 222 RSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVR---IVAA 278 Query: 714 SN 715 +N Sbjct: 279 TN 280
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 32.0 bits (73), Expect = 0.002 Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 5/73 (6%) Query: 97 IEQVARTSGIEIEIISGTEEANLVYE---NHIAEGL--DEDYDYLYIDVGGGSTEVTFYE 151 QV R + E +G E L+ E I GL E + +D+GGG+TEV Sbjct: 118 ATQVERRAIRESAQGAGAREVFLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVIS 177 Query: 152 NGKAKFSHSFNIG 164 +S S IG Sbjct: 178 LNGVVYSSSVRIG 190
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 32.4 bits (73), Expect = 0.008 Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 6/118 (5%) Query: 432 NDNYSRSKNDLDSIRRKIRA-----AEKDAED-EYIANLRNEKTRLDNRVYSIDKEVYDL 485 N N +K +S + +I A A +DA Y NL+ K L +++ +++K + D Sbjct: 638 NKNKMEAKAQANSQKDEIFALINKEANRDARAIAYAQNLKGIKRELSDKLENVNKNLKDF 697 Query: 486 SEKIGSFKNEIKTLKQRQEELRKKIDDSRRYSDKDKITQRQIENLRNFIKDFKDATKK 543 + FKN + EE K + S + + ++ENL + +FK+ K Sbjct: 698 DKSFDEFKNGKNKDFSKAEETLKALKGSVKDLGINPEWISKVENLNAALNEFKNGKNK 755
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 83.7 bits (207), Expect = 2e-20 Identities = 68/336 (20%), Positives = 118/336 (35%), Gaps = 57/336 (16%) Query: 7 KILITGALGQIGTELTAKLVE----IYGKDNVIASGID-----KWREGITTAG-HYERID 56 K L+TGA G IG ++ +L+E + G DN + D E + G + +ID Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDN-LNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 57 VTNFKLLEDFIKENKITTVYHLASLLSGT--SEKQPLFAWKLNLEPLLHLCELAKEGYLK 114 + + + + D V+ S + P NL L++ E + ++ Sbjct: 61 LADREGMTDLFASGHFERVFISPHR-LAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQ 119 Query: 115 KIFWPSSIAVFGKGIPKHNVGQDVVLNPTTVYGISKMAGEKWCEYYHDKYGVDVRSIRY- 173 + + SS +V+G D V +P ++Y +K A E Y YG+ +R+ Sbjct: 120 HLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFF 179 Query: 174 ----PGLISWKAPAGGGTTDYAVEIFYEAVEKGE-YQCFISENTAMPMLYMDDAINATIK 228 P W P D A+ F +A+ +G+ + Y+DD A I+ Sbjct: 180 TVYGP----WGRP------DMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIR 229 Query: 229 LMQEPAENISVWGS--------------YNLGGMSFTP-AELTNEI-----KKVMPNFKI 268 L + W YN+G S + + + N Sbjct: 230 LQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLP 289 Query: 269 SYQPDFRQSIADSWPASIDDSKAKEDWGLSYEFDIK 304 D ++ AD+ E G + E +K Sbjct: 290 LQPGDVLETSADT-------KALYEVIGFTPETTVK 318
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 31.0 bits (70), Expect = 0.007 Identities = 13/72 (18%), Positives = 23/72 (31%), Gaps = 10/72 (13%) Query: 163 VYLRF----GRPAVPVFMPEDMPFEIGKGILLQEGKDVTIVATGHLVW-ESLVAAEQL-- 215 V F G + + P G + + + IVA V+ + A ++ Sbjct: 786 VRAEFKARVGIKLLMTLTHNNKPLPFGAMVTSESSQSSGIVADNGQVYLSGMPLAGKVQV 845 Query: 216 ---EKEGISCEV 224 E+E C Sbjct: 846 KWGEEENAHCVA 857
>ARGREPRESSOR#Bacterial arginine repressor signature. Length = 149 Score = 25.2 bits (55), Expect = 0.042 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 9/72 (12%) Query: 30 IAILSYLEQQNSCFTGDLVDI-----FPLAQSTISQHLKELKRVGLIKGELNPPKIKYCI 84 I I + +LVDI + + Q+T+S+ +KEL L+K N KY + Sbjct: 8 IKIREIITANEIETQDELVDILKKDGYNVTQATVSRDIKEL---HLVKVPTNNGSYKYSL 64 Query: 85 -DEEKWNLAQSL 95 ++++N L Sbjct: 65 PADQRFNPLSKL 76
>PF06580#Sensor histidine kinase Length = 349 Score = 32.9 bits (75), Expect = 0.002 Identities = 20/116 (17%), Positives = 49/116 (42%), Gaps = 4/116 (3%) Query: 25 VKGFSFKLEEYFSPQVFNLVILESWALPISFFVVLLELILGFLLLLKISVRKVLLALIGL 84 + GF F Y SP++ +++ + +L + LK+++ +++L ++ Sbjct: 25 LTGFGFASL-YGSPKLHSMIFNIAISLMGLVLTHAYRSFIKRQGWLKLNMGQIILRVLPA 83 Query: 85 CVFFAFL--TFYSAYFNVVTDCGCFGDAIKFTPWQSFWKDIVLLTLLL-LLYFAYR 137 CV + ++ + ++ A S ++V++T + LLYF + Sbjct: 84 CVVIGMVWFVANTSIWRLLAFINTKPVAFTLPLALSIIFNVVVVTFMWSLLYFGWH 139
>TRNSINTIMINR#Translocated intimin receptor (Tir) signature. Length = 549 Score = 28.2 bits (62), Expect = 0.012 Identities = 11/32 (34%), Positives = 19/32 (59%) Query: 59 NGIKTTLTLNQKDWSYHMISDYMDKEKFENTG 90 NG++ ++TL+ ++WS D K +F TG Sbjct: 127 NGLEVSVTLSPQEWSSLQSIDTEGKNRFVFTG 158
>STREPTOPAIN#Streptopain (C10) cysteine protease family signature. Length = 398 Score = 29.3 bits (65), Expect = 0.017 Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 7/72 (9%) Query: 186 IEGYIKNIREDGKIDVSLQPEGYTNIDEFKQKILDKLDENYGLLYLSDQSSPEEIKTELQ 245 +E Y++ I+E+ K+D + Y E KQ ++ L ++ G+ Y +Q +P + T + Sbjct: 121 MESYVEQIKENKKLDTT-----YAGTAEIKQPVVKSLLDSKGIHY--NQGNPYNLLTPVI 173 Query: 246 MSKKNFKKAIGG 257 K +++ G Sbjct: 174 EKVKPGEQSFVG 185
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 25.9 bits (57), Expect = 0.019 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 2/37 (5%) Query: 56 KDRQIPDEVIVGGYEALNPKKRPLFYRDKALEYIKQL 92 + ++ D+V V NP K+P+F + LE I + Sbjct: 22 RGCRLFDQVYVA--VLRNPNKQPMFSVQERLEQIAKA 56
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 29.4 bits (66), Expect = 0.006 Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 3/51 (5%) Query: 6 PYNGNVTSINPEDIESTVILKDATATAIYGARGANGVVLINTKTGRGRSVI 56 Y N +++ + V L +A A + RGA +V K G ++ Sbjct: 752 EYRENRVALDTNTLADNVDLDNAVANVVPT-RGA--IVRAEFKARVGIKLL 799
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 27.5 bits (61), Expect = 0.047 Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 13/59 (22%) Query: 120 LEKGRVVIFGAGTGNPYFTT-------------DTAATLRAIEIGADVILKGTRVDGIY 165 +E+G +VI G G P D A A E+ AD+ + T V+G Sbjct: 183 VERGVIVIASGGGGVPVILEDGEIKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNGAA 241
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 171 bits (436), Expect = 3e-54 Identities = 60/296 (20%), Positives = 131/296 (44%), Gaps = 17/296 (5%) Query: 4 LKLIIISFTFLIINSCATVHDNNLKYQIEKIISSK-KGDFGISIIDENNN--IIEINGNK 60 ++ I + L+ VH + + K+ S+ G G+ +D + + ++ Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADE 60 Query: 61 SYPLLSTFKFPIALTILHKVENGELLMQQQIFIKKEELLENTWSPFKEKYPNGNISISLE 120 +P++STFK + +L +V+ G+ ++++I ++++L+ +SP EK+ ++ + Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLV--DYSPVSEKHLADGMT--VG 116 Query: 121 EALHWMIVYSDNNMTDILLRLIGGTNAVEKF---IDDENFVIKNNEDEMHKDWNSQFINK 177 E I SDN+ ++LL +GG + F I D + E E+++ + Sbjct: 117 ELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDT 176 Query: 178 STPNSFTKLLKNFSEGKMLNSENTKWLYESMVNSKTGVKRLKGKLP-NVKIAQRAGTSFT 236 +TP S L+ + L++ + + L + MV+ + ++ LP IA + G Sbjct: 177 TTPASMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTGA--- 233 Query: 237 NDDGITGAINNVGIMQLPNNQKIYITVFIHNTSEEFNKGEEIIADIAKTTYEFYTK 292 G GA V ++ N + + +++ +T + + IA I E + + Sbjct: 234 ---GERGARGIVALLGPNNKAERIVVIYLRDTPASMAERNQQIAGIGAALIEHWQR 286
>adhesinb#Adhesin B signature. Length = 310 Score = 28.7 bits (64), Expect = 0.046 Identities = 12/42 (28%), Positives = 23/42 (54%) Query: 95 EEFDGIKIADIITKLKKNTVPTKAIEHSIPEWLAETLEKELG 136 EE +I ++ KL+K VP+ +E S+ + +T+ K+ Sbjct: 230 EEGTPDQIKTLVEKLRKTKVPSLFVESSVDDRPMKTVSKDTN 271
>56KDTSANTIGN#Rickettsia 56kDa type-specific antigen protein signature. Length = 533 Score = 29.2 bits (65), Expect = 0.034 Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 12/77 (15%) Query: 43 QLHLDALPYYNFGKGVGITSPDSLFQFNIRFRMQNRLEADFNDNRSTEYKAAIRRLRLRF 102 Q++ D P F GI PD+ + N + ++ E + LR F Sbjct: 270 QIYSDIKP---FADIAGINVPDT--------GLPNSASIEQIQSKIQELGDTLEELRDSF 318 Query: 103 DGYVGNPRFLYAIQLSF 119 DGY+ N F+ I L+F Sbjct: 319 DGYINNA-FVNQIHLNF 334
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 33.3 bits (76), Expect = 0.002 Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 4/126 (3%) Query: 48 LSIDPAQASLIYGYFTGFVYFTPLIGGWLADKFLGQRLSITIGGVLMMLGQFTLFAINTH 107 + PA + + F + G L+D+ +RL + G ++ G F ++ Sbjct: 44 FNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLL-FGIIINCFGSVIGFVGHSF 102 Query: 108 FGLYI-GLLLLIIGNGFFKPNISVLVGNLYEEGDERRDSAFSIFYMGINLGALIAPLVIG 166 F L I + G F + V+V + E R AF + + +G + P + G Sbjct: 103 FSLLIMARFIQGAGAAAFPALVMVVVARYIPK--ENRGKAFGLIGSIVAMGEGVGPAIGG 160 Query: 167 VLTDDI 172 ++ I Sbjct: 161 MIAHYI 166
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 39.7 bits (92), Expect = 4e-05 Identities = 35/249 (14%), Positives = 71/249 (28%), Gaps = 23/249 (9%) Query: 201 TELTASQNIKANLVRREEEKTIKKQDVE-AREAILELEKQLAEKEETQ-KREVENIKARE 258 + Q K ++ Q+ E A+EA ++ E Q E + + E Sbjct: 1040 VAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTE 1099 Query: 259 NAEILKVAEEERLKYESVRIATEEALQIAEENKQRQVVIAAKNKERADLVETERVQKDKM 318 E V +EE+ K E+ + + KQ Q ET + Q + Sbjct: 1100 TKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQ-------------SETVQPQAEP- 1145 Query: 319 LEATERERIVALADIEKDKAVELEKKNIQDVIRE--RLAKEKTVVEEQQNIYDVEALKSA 376 A E + V + + + + + ++ N + Sbjct: 1146 --ARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTT 1203 Query: 377 ERDKQVQLIIAAREAEERLIAETKAAEARKLAAEKDAQKYVIEAQAKRDAAEKEAEARKI 436 Q + + + + + + + A D A + Sbjct: 1204 PATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDR-STVALCDLTSTNTNA--V 1260 Query: 437 IADALAKEE 445 ++DA AK + Sbjct: 1261 LSDARAKAQ 1269
>SALSPVBPROT#Salmonella virulence plasmid 65kDa B protein signature. Length = 591 Score = 60.9 bits (147), Expect = 5e-11 Identities = 53/215 (24%), Positives = 87/215 (40%), Gaps = 30/215 (13%) Query: 209 ISGLKAASPMVGIQPLSVP-------TPSPDGSGSTSFGIELPKGRAGMQPSLQLQYSNE 261 ++G +A+ + I P +P PDG S + + + R G P+L L YS+ Sbjct: 4 LNGFSSAT-LALITPPFLPKGGKALSQSGPDGLASITLPLPISAER-GFAPALALHYSSG 61 Query: 262 GGNSWLGLGWNLALPSLTVDTKFGAPRYDAQKETETYL-LSGEELLPNAHRAEWENRSAD 320 GGN G+GW+ A S+ T G P+Y+ +++ +L GE L+ + N Sbjct: 62 GGNGPFGVGWSCATMSIARSTSHGVPQYN---DSDEFLGPDGEVLVQTLSTGDAPNPVTC 118 Query: 321 KI--------------FYPRREGAFQKI-HRKGASPNAYTWEVRSRGGVAFYYGDSEDSR 365 + PR E +F ++ + G S W + G+ G + +R Sbjct: 119 FAYGDVSFPQSYTVTRYQPRTESSFYRLEYWVGNSNGDDFWLLHDSNGILHLLGKTAAAR 178 Query: 366 LSDAQG--NVGYWALREQKDLRGNTVTYEYTKAQG 398 LSD Q + W + E G + Y Y G Sbjct: 179 LSDPQAASHTAQWLVEESVTPAGEHIYYSYLAENG 213
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.4 bits (66), Expect = 0.015 Identities = 9/57 (15%), Positives = 22/57 (38%), Gaps = 11/57 (19%) Query: 189 DIKSAAAGTILFAGEKSGYGKCVIISHGNGLATLYGHLSQVLVKANDKIKAGETIAK 245 +I + A G + +G I + +++VK + ++ G+ + K Sbjct: 81 EIVATANGKLTHSGRS------KEIKPIEN-----SIVKEIIVKEGESVRKGDVLLK 126
>BINARYTOXINB#Binary toxin B family signature. Length = 764 Score = 28.5 bits (63), Expect = 0.027 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%) Query: 163 ESGKTILIETDAVYGTNDAFYEAKGSYSFMHTCNTWAN 200 E K + ++TD VYG N A Y + + T + W+ Sbjct: 472 EKTKQLRLDTDQVYG-NIATYNFENGRVRVDTGSNWSE 508
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 68.8 bits (168), Expect = 2e-15 Identities = 40/176 (22%), Positives = 66/176 (37%), Gaps = 20/176 (11%) Query: 98 SNAYIKQLISTNARNDSLNLALSNKLKRSLDNVADQDVQVKVLKGVV--MISLSDKMLYR 155 +N I T N L+L +S + + + V +L +L+ Sbjct: 166 NNIGDAHTIGTRPDNGMLSLGVSYRFGQG-EAAPVVAPAPAPAPEVQTKHFTLKSDVLFN 224 Query: 156 SGDYNILPAAQEVLGKVAKVINDYD--KYSVLIEGNTDNVPLNSASLPKDNWDLSALRAT 213 + P Q L ++ +++ D SV++ G TD + N LS RA Sbjct: 225 FNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRI-----GSDAYNQGLSERRAQ 279 Query: 214 SVAKVLQNQFGVDPSRITAGGRSEYNPKATNMS---------VSGRAENRRTEIII 260 SV L ++ G+ +I+A G E NP N + A +RR EI + Sbjct: 280 SVVDYLISK-GIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEV 334
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 362 bits (930), Expect = e-127 Identities = 159/339 (46%), Positives = 221/339 (65%), Gaps = 9/339 (2%) Query: 3 LFDLFTQEIAIDLGTANTLIIHNNK-IVIDQPSIVAIDRQSGRP----IAVGEQAKHMQG 57 +F+ +++IDLGTANTLI + IV+++PS+VAI + AVG AK M G Sbjct: 5 FRGMFSNDLSIDLGTANTLIYVKGQGIVLNEPSVVAIRQDRAGSPKSVAAVGHDAKQMLG 64 Query: 58 KTHEDIRTVRPLKDGVIADFHASEHMIKEFIKQIPGIKGKLFQPALKIVICIPSGITEVE 117 +T +I +RP+KDGVIADF +E M++ FIKQ+ +P+ ++++C+P G T+VE Sbjct: 65 RTPGNIAAIRPMKDGVIADFFVTEKMLQHFIKQV--HSNSFMRPSPRVLVCVPVGATQVE 122 Query: 118 KRAVRDSAQKVNAKEVRLIYEPMAAAIGVGIDVQKPEGNMIIDIGGGTTEIAVVALGGIV 177 +RA+R+SAQ A+EV LI EPMAAAIG G+ V + G+M++DIGGGTTE+AV++L G+V Sbjct: 123 RRAIRESAQGAGAREVFLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNGVV 182 Query: 178 CDKSVKIAGDVFTNDIAYYLRTHHNLFIGERTAERIKIEVGSAVEELDIDIEDIPVQGRD 237 SV+I GD F I Y+R ++ IGE TAERIK E+GSA ++ +I V+GR+ Sbjct: 183 YSSSVRIGGDRFDEAIINYVRRNYGSLIGEATAERIKHEIGSAYP--GDEVREIEVRGRN 240 Query: 238 LITGKPKEIMIGYKEIARALDKSIIRIEDAVMETLSMTPPELAADIYKTGIYLAGGGALL 297 L G P+ + EI AL + + I AVM L PPELA+DI + G+ L GGGALL Sbjct: 241 LAEGVPRGFTLNSNEILEALQEPLTGIVSAVMVALEQCPPELASDISERGMVLTGGGALL 300 Query: 298 RGLADRLHKKTGLPVFVAEDPLRAVVRGTGIALKNMDKF 336 R L L ++TG+PV VAEDPL V RG G AL+ +D Sbjct: 301 RNLDRLLMEETGIPVVVAEDPLTCVARGGGKALEMIDMH 339
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 32.5 bits (74), Expect = 0.003 Identities = 35/169 (20%), Positives = 64/169 (37%), Gaps = 19/169 (11%) Query: 2 SNIVAIVGRPNVGKSTLFNRLLERREAIVDSVAGVTRDRHYGKSEWNGVEFTVIDTGGYD 61 S + +G + G + N LLER+ I + W + +IDT G+ Sbjct: 27 SGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQ-------WENTKVNIIDTPGH- 78 Query: 62 VGTDDIFEEEIRHQVQLAVDEATSIIFMLNVEEGLTDTDQEIHELLRRSNKPIYIVVNKV 121 D + E V +D A I +++ ++G+ + + LR+ P +NK+ Sbjct: 79 --MDFLAEVYRSLSV---LDGA---ILLISAKDGVQAQTRILFHALRKMGIPTIFFINKI 130 Query: 122 DSAKEELPATEFYQLGIEKYYTLSSATGSGTGDLLDAVVADFPTTEYKD 170 D +L YQ I++ + + V +F +E D Sbjct: 131 DQNGIDLSTV--YQ-DIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWD 176 Score = 31.0 bits (70), Expect = 0.010 Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 30/138 (21%) Query: 178 ITIAGRPNVGKSTLTNALLDNKRNI----VTDIAGTTRDSIE-------------TIYNK 220 I + + GK+TLT +LL N I D T D+ T + Sbjct: 6 IGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW 65 Query: 221 FGHEFVLVDTAGMRKKSKVSENLEFYS-VMRSVRAIEHSDVVVIMVDATQGWESQDMNIF 279 + ++DT G +++F + V RS+ + D ++++ A G ++Q +F Sbjct: 66 ENTKVNIIDTPG---------HMDFLAEVYRSLSVL---DGAILLISAKDGVQAQTRILF 113 Query: 280 GIAQKNRKGIVILVNKWD 297 +K + +NK D Sbjct: 114 HALRKMGIPTIFFINKID 131
>PF03309#Bvg accessory factor Length = 271 Score = 35.5 bits (82), Expect = 2e-04 Identities = 25/148 (16%), Positives = 51/148 (34%), Gaps = 27/148 (18%) Query: 10 MALGIDIGGTDTKFGLVN---HRGEILGKGRIKTDYDEIDDFINALYKEIEPILEQHNAK 66 M L ID+ T T GL++ +++ + RI+T+ + D + L +A+ Sbjct: 1 MLLAIDVRNTHTVVGLISGSGDHAKVVQQWRIRTEPEVTADELALTIDG----LIGDDAE 56 Query: 67 SQLEGIGIG--APNGNYYKGTIENAPNLKWKGIVPLAEKMTAKFGVQCKVTND------- 117 +L G P+ + + W + + + + G+ V N Sbjct: 57 -RLTGASGLSTVPSVLH---EVRVMLEQYWPNVPHVLIEPGVRTGIPLLVDNPKEVGADR 112 Query: 118 -ANAAAYGEMMFGAARGMKDFIMITLGT 144 N A + I++ G+ Sbjct: 113 IVNCLA------AYHKYGTAAIVVDFGS 134
>INTIMIN#Intimin signature. Length = 939 Score = 27.0 bits (59), Expect = 0.022 Identities = 15/69 (21%), Positives = 23/69 (33%), Gaps = 7/69 (10%) Query: 56 HHSHFSTQKHYKSFFSASYFVLPKLVNIPSLLKHKR-------EKKIADYRKWQIVKYTF 108 + +S Q Y+ S + P+ VN L R I +Y+K I+ Sbjct: 399 NDLLYSMQFRYQFDKPWSQQIEPQYVNELRTLSGSRYDLVQRNNNIILEYKKQDILSLNI 458 Query: 109 THSNRGPPH 117 H G Sbjct: 459 PHDINGTER 467
>SECA#SecA protein signature. Length = 901 Score = 860 bits (2223), Expect = 0.0 Identities = 392/1051 (37%), Positives = 537/1051 (51%), Gaps = 254/1051 (24%) Query: 4 LNTILKSFLGNKNEKDLKEVKKVVAKIKAVEPEVGKLSDDGLRQKTEEFQNKIKEATSKI 63 L +L G++N++ L+ ++KVV I A+EPE+ KLSD+ L+ KT EF+ ++++ Sbjct: 2 LIKLLTKVFGSRNDRTLRRMRKVVNIINAMEPEMEKLSDEELKGKTAEFRARLEKGEV-- 59 Query: 64 TSQVEELKEKIKTSKDVDEKEALFNKIEELKKEAYQIEEKVLTDILPEAFAVLKETARRW 123 L +++PEAFAV++E ++R Sbjct: 60 -----------------------------------------LENLIPEAFAVVREASKR- 77 Query: 124 AQNGEIRVKANDRDRALAATKDFVVIEGDEAVWLNHWDAAGTKVQWDMVHYDVQFIGGVV 183 + M H+DVQ +GG+V Sbjct: 78 --------------------------------------------VFGMRHFDVQLLGGMV 93 Query: 184 LHGGKIAEMATGEGKTLVGTLPIYLNALPGRGVHVVTVNDYLARRDSAWMGPLYEFHGLS 243 L+ IAEM TGEGKTL TLP YLNAL G+GVHVVTVNDYLA+RD+ PL+EF GL+ Sbjct: 94 LNERCIAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLT 153 Query: 244 IDCIDNHQPNSDARRKAYQCNITYGTNNEFGFDYLRDNMVNSPNEMVQGELNYAIVDEVD 303 + P + A+R+AY +ITYGTNNE+GFDYLRDNM SP E VQ +L+YA+VDEVD Sbjct: 154 VGINLPGMP-APAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVD 212 Query: 304 SVLIDDARTPLIISGPVPQGDRQEFDVLKPSVDRIVDVQKKTVSAIFHEAKKLIAQGNTK 363 S+LID+ARTPLIISGP + S ++ K+I Sbjct: 213 SILIDEARTPLIISGPA-----------------------EDSSEMYKRVNKIIP----- 244 Query: 364 EGGFKLLQAYRGLPKNRQLIKFLSETGNKALLQKVEAQYMQDNNREMPKVDKDLYFVIDE 423 + + E + + F +DE Sbjct: 245 -----------------------------------HLIRQEKEDSETFQGEGH--FSVDE 267 Query: 424 KNNQIDLTDKGVEYMSQGNSDPNFFVLQDIGTELAELEAQNLPKEEEFAKKEELFRDFAV 483 K+ Q++LT++G+ + + + D G L L Sbjct: 268 KSRQVNLTERGLVLIEELLVKEG---IMDEGESLYSPANIML------------------ 306 Query: 484 KSERIHTLNQLLKAYTLFEKDDQYVVMDGEVKIVDEQTGRIMEGRRYSDGLHQAIEAKEN 543 +H + L+A+ LF +D Y+V DGEV IVDE TGR M+GRR+SDGLHQA+EAKE Sbjct: 307 ----MHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEG 362 Query: 544 VKIEAATQTFATITLQNYFRMYNKLAGMTGTAETESGEFWEIYRLDVVVIPTNRPIQRND 603 V+I+ QT A+IT QNYFR+Y KLAGMTGTA+TE+ EF IY+LD VV+PTNRP+ R D Sbjct: 363 VQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKD 422 Query: 604 KHDLVYKTNREKYNAVIEEVEKLTSAGRPVLVGTTSVEISQLLSKALQLRKIPHQVLNAK 663 DLVY T EK A+IE++++ T+ G+PVLVGT S+E S+L+S L I H VLNAK Sbjct: 423 LPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAK 482 Query: 664 LHKKEAEIVAEAGRAGVVTIATNMAGRGTDIKL--------------------------- 696 H EA IVA+AG VTIATNMAGRGTDI L Sbjct: 483 FHANEAAIVAQAGYPAAVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQ 542 Query: 697 --SKEVKDAGGLAIIGTERHDSRRVDRQLRGRAGRQGDPGSSQFYVSLEDNLMRLFGSER 754 V +AGGL IIGTERH+SRR+D QLRGR+GRQGD GSS+FY+S+ED LMR+F S+R Sbjct: 543 VRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDALMRIFASDR 602 Query: 755 IAKMMDRLGHKEGEVIQHSMITKSIERAQKKVEENNFGIRKRLLEYDDVMNKQRDVIYKR 814 ++ MM +LG K GE I+H +TK+I AQ+KVE NF IRK+LLEYDDV N QR IY + Sbjct: 603 VSGMMRKLGMKPGEAIEHPWVTKAIANAQRKVESRNFDIRKQLLEYDDVANDQRRAIYSQ 662 Query: 815 RKNALFGDHLKYDIANMIFDVSHSIVNQTKMHGDYKDFEFEVIKYFTMEAPVSEADFKNK 874 R L + I ++ DV + ++ + E+ ++ + + Sbjct: 663 RNELLDVSDVSETINSIREDVFKATIDAYIPPQSLE----EMWDIPGLQERLKNDFDLDL 718 Query: 875 TVKELTDVVFKKAQEDYEMKLNLLKEKSFPIIENVYQNQGNMFKMIQVPFSDGTKTMTIL 934 + E D ++ E+ L+E+ IL Sbjct: 719 PIAEWLD-------KEPELHEETLRER-------------------------------IL 740 Query: 935 ADLKEAYETQCDSL----INDFEKNICLSIIDENWKLHLREMDDLRRSSQGAVYEQKDPL 990 A E Y+ + + + + FEK + L +D WK HL MD LR+ Y QKDP Sbjct: 741 AQSIEVYQRKEEVVGAEMMRHFEKGVMLQTLDSLWKEHLAAMDYLRQGIHLRGYAQKDPK 800 Query: 991 VIYKQESFHLFSEMVDKINKEIISFLYKGEI 1021 YK+ESF +F+ M++ + E+IS L K ++ Sbjct: 801 QEYKRESFSMFAAMLESLKYEVISTLSKVQV 831
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 373 bits (959), Expect = e-131 Identities = 128/351 (36%), Positives = 192/351 (54%), Gaps = 37/351 (10%) Query: 5 TYLVTGGSGFIGSHLVEALLKNGHFVINVDNFDDFYNYKTKINNTLESLGITTNFDFENK 64 YLVTG +GFIG H+ + LL+ GH V+ +DN +D+Y+ K LE L Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLK-QARLELLA---------- 50 Query: 65 NLDIKKLASLVNKGNYKFYYQDIRDKEGLEKIFKNHRPDVVIHLAALAGVRPSIERPLEY 124 + ++F+ D+ D+EG+ +F + + V VR S+E P Y Sbjct: 51 ------------QPGFQFHKIDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAY 98 Query: 125 QEVNIKGTMNIWEVAKDLGICKFVIASSSSVYGNNEKIPFSEEDNVDRPISPYAATKKCV 184 + N+ G +NI E + I + ASSSSVYG N K+PFS +D+VD P+S YAATKK Sbjct: 99 ADSNLTGFLNILEGCRHNKIQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKAN 158 Query: 185 EVLGHTYHHLYGMDMVQLRFFTVYGPRQRPDLAIHKFAKIIKDNKQVPFYGDGNTARDYT 244 E++ HTY HLYG+ LRFFTVYGP RPD+A+ KF K + + K + Y G RD+T Sbjct: 159 ELMAHTYSHLYGLPATGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFT 218 Query: 245 FVDDIIDGIMKSIKYVEE--------------NAGVYEIFNLGESEVIPLHKMLSTIEEE 290 ++DDI + I++ + + Y ++N+G S + L + +E+ Sbjct: 219 YIDDIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDA 278 Query: 291 LGVKATLNKLPMQAGDVQKTNADIRKAQQKIGYAPTTNFQNGIKKFVEWFL 341 LG++A N LP+Q GDV +T+AD + + IG+ P T ++G+K FV W+ Sbjct: 279 LGIEAKKNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYR 329
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 162 bits (410), Expect = 2e-51 Identities = 94/251 (37%), Positives = 139/251 (55%), Gaps = 10/251 (3%) Query: 4 LEGKVALITGATRGIGKGIAEIFAAQGAQVAFTYAGSVDKAQALEAELNKTTKAKAYQSD 63 +EGK+A ITGA +GIG+ +A A+QGA +A + + + + A+A+ +D Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 64 ASDYEGSQKLVEEVLAEFGKIDILVNNAGITKDNLMLRMSKEDWDTIIKVNLDSVFNLTK 123 D ++ + E G IDILVN AG+ + L+ +S E+W+ VN VFN ++ Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 124 AVIKPMMKARGGSIVNMTSVVGIKGNAGQANYAASKAGVIGFTKSIALELGSRNIRCNAI 183 +V K MM R GSIV + S A YA+SKA + FTK + LEL NIRCN + Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 184 APGFIETEMTAAL------DEKTVQGWRET----IPLKRGGQPEDVANACVFLGSELSSY 233 +PG ET+M +L E+ ++G ET IPLK+ +P D+A+A +FL S + + Sbjct: 186 SPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGH 245 Query: 234 VTGQVLNVDGG 244 +T L VDGG Sbjct: 246 ITMHNLCVDGG 256
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 301 bits (772), Expect = 2e-97 Identities = 90/372 (24%), Positives = 165/372 (44%), Gaps = 25/372 (6%) Query: 449 KHDTVLEVNLNNLLHNINVHKSLLKPETKIMAMVKAYSYGLGGYEIAEFLQHHHIDYLGV 508 ++L L N+++ + ++ ++VKA +YG G I + D + Sbjct: 2 TRPIQASLDLQALKQNLSIVRQAA-THARVWSVVKANAYGHGIERIWSAIGA--TDGFAL 58 Query: 509 AVADEGVELRKNGITVPIVVMNPEQHS--YNTIIEYNLEPNIYSFRVLELFHKQLKQNGY 566 +E + LR+ G PI+++ H+ ++ L ++S L+ + Sbjct: 59 LNLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNARLKA-- 116 Query: 567 EGRYPIHIKLETGMHRLGFKEDEIDQLKDYLNQMS-VKVESIFSHLSSSDIPQEKDYTLA 625 I++K+ +GM+RLGF+ D + + L M+ V ++ SH + ++ D Sbjct: 117 --PLDIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAE---HPDGISG 171 Query: 626 QCQKFDKLSQNIIKDLNYKPLRHILNSAGITNYTYYQMDMVRIGIGMMGISASPEIQPL- 684 + + + L + R + NSA + D VR GI + G S S + + + Sbjct: 172 AMARI----EQAAEGLECR--RSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIA 225 Query: 685 ---LNPVVAFKSVISQISEIQPNDSVSYGRRYKASKSTRIATIPVGYADGVPRLLSNGVG 741 L PV+ S I + ++ + V YG RY A RI + GYADG PR G Sbjct: 226 NTGLRPVMTLSSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHAPTG-T 284 Query: 742 YVGIKNTLCPIVGSVCMDMMMVDISDLP-TKEGDEVTIFHEKPSLEDFAMYSQTIPYEVL 800 V + VG+V MDM+ VD++ P G V ++ ++ ++D A + T+ YE++ Sbjct: 285 PVLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELM 344 Query: 801 TSISRRVKRVYI 812 +++ RV V + Sbjct: 345 CALALRVPVVTV 356
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 37.9 bits (88), Expect = 1e-04 Identities = 16/137 (11%), Positives = 45/137 (32%), Gaps = 25/137 (18%) Query: 37 IPLGIQAIISYAFGATMVTSIYLLIAFVVLGTWLTGYFQIKVMMIIEKIQQKIFVDYTFK 96 +P + +G+ + L + + G G M ++E + K+ + Sbjct: 798 VPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAMALMENLASKLPAGIGYD 857 Query: 97 IAKRLPDIDLYSVNNYHLPELINRFFDTQNLQKSFSKMLLSIPTSIIQIIFGVILLSLYH 156 + + S ++ + S + ++F + L +LY Sbjct: 858 WT-----------------------GMSYQERLSGNQAPALVAISFV-VVF-LCLAALYE 892 Query: 157 VWFLVFGIFLIIGIVVL 173 W + + L++ + ++ Sbjct: 893 SWSIPVSVMLVVPLGIV 909
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 102 bits (257), Expect = 7e-26 Identities = 61/370 (16%), Positives = 128/370 (34%), Gaps = 56/370 (15%) Query: 21 WFFIGLGILLLLL--LLPWTQNIHTNGYV--SGLYQEQRPQSIQSPIPGKIIHWYVKNGD 76 +F +G ++ +L L NG + SG R + I+ + VK G+ Sbjct: 62 YFIMGFLVIAFILSVLGQVEIVATANGKLTHSG-----RSKEIKPIENSIVKEIIVKEGE 116 Query: 77 QVKKGDTLLRISEIKEDY------------------MDPLLVQRAEDQINAKDNVRDYYS 118 V+KGD LL+++ + + L +++ + Y Sbjct: 117 SVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYF 176 Query: 119 AKI-----KTIGGQLDAMNAARELKLNQIRIKLQQLNFKINATNAELQAANNEFRMAEDQ 173 + + + + + + Q + L + + A + N R+ + + Sbjct: 177 QNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSR 236 Query: 174 YRRQEEMYKQGLVS---LTDFQRRNVSYQNALAKKNSIENKLAEAQQEILSLQVEQNATI 230 + + ++ + + + + V N L +++L + + EILS + E Sbjct: 237 LDDFSSLLHKQAIAKHAVLEQENKYVEAVNELR---VYKSQLEQIESEILSAKEEYQLVT 293 Query: 231 QDYNEKISKLEGERFQSMGQVSGSDGEIAKLQTQVTNYKVRQGQYYIIATQDGQITQLSK 290 Q + +I ++ + I L ++ + RQ I A ++ QL Sbjct: 294 QLFKNEIL----------DKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKV 343 Query: 291 TGIGEIIKEGENIGIIVPKSVKYAVEFYVSPVDLPLLQEGQKIRCTFDGFPAIVFSGWPN 350 G ++ E + +IVP+ V V D+ + GQ + F P Sbjct: 344 HTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAF--------PY 395 Query: 351 SSYGTFPGKI 360 + YG GK+ Sbjct: 396 TRYGYLVGKV 405
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 28.7 bits (64), Expect = 0.040 Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 6/49 (12%) Query: 26 ALQILCAVLLTDQEVRIKNIPDIQDV--NKLIGILGDLGVKVTKNGKGD 72 AL L RIK+I +Q N+LIG G+ V G GD Sbjct: 15 ALPFLSTPPAQADTSRIKDIASLQAGRDNQLIGY----GLVVGLQGTGD 59
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 91.4 bits (227), Expect = 1e-23 Identities = 34/128 (26%), Positives = 64/128 (50%) Query: 4 RILLVEDDQSFGAVLKDYLSINNFEVTLATDGEEGLKEYTNNDFDICIFDVMMPKKDGFT 63 IL+ +DD + VL LS ++V + ++ + D D+ + DV+MP ++ F Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 64 LAEDVKKLGKNIPIIFLTARNLREDILKGYQLGADDYITKPFDTELLLYKIKAILSRSTS 123 L +KK ++P++ ++A+N +K + GA DY+ KPFD L+ I L+ Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 124 LEEEEQEQ 131 + ++ Sbjct: 125 RPSKLEDD 132
>PF06580#Sensor histidine kinase Length = 349 Score = 39.8 bits (93), Expect = 2e-05 Identities = 30/189 (15%), Positives = 72/189 (38%), Gaps = 35/189 (18%) Query: 319 SGLIKQENLRMKKQVENVLNMSKLERNEMKLF-LRETNLRELIRNIANSVRLIVNERGGR 377 LI ++ K E + ++S+L R ++ R+ +L + + + + ++L + R Sbjct: 183 RALILEDP---TKAREMLTSLSELMRYSLRYSNARQVSLADELTVVDSYLQLASIQFEDR 239 Query: 378 LT--EDFKAERYNLKVDEFHLSNTLINLLDNANKY----SPDKPEIKIATRNEGNYYVIE 431 L +++V + L++N K+ P +I + + +E Sbjct: 240 LQFENQINPAIMDVQVPPM----LVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLE 295 Query: 432 ISDKGMGMEPQNKTKIFEKFFREETGNVHNVKGQGLGLSYVKKIIELHKG---QISVETQ 488 + + G K + G GL V++ +++ G QI + + Sbjct: 296 VENTGSLALKNTK------------------ESTGTGLQNVRERLQMLYGTEAQIKLSEK 337 Query: 489 KGKGSTFIV 497 +GK + ++ Sbjct: 338 QGKVNAMVL 346
>PF03309#Bvg accessory factor Length = 271 Score = 196 bits (501), Expect = 1e-64 Identities = 75/257 (29%), Positives = 125/257 (48%), Gaps = 16/257 (6%) Query: 4 IVVNIGNTNIRFGLFNNEGCSL----SWVINTKPYRTKDELFVQFLMHYQSYDIKPKEID 59 + +++ NT+ GL + G W I T+P T DEL + + + Sbjct: 3 LAIDVRNTHTVVGLISGSGDHAKVVQQWRIRTEPEVTADELALTID---GLIGDDAERLT 59 Query: 60 QLIIGSVVPQMTNDIVRALEKIHHLKPILV---DRNTPSEVKPKS-KQMGTDIYANLVAA 115 S VP + +++ LE+ P ++ T + + K++G D N +AA Sbjct: 60 GASGLSTVPSVLHEVRVMLEQYWPNVPHVLIEPGVRTGIPLLVDNPKEVGADRIVNCLAA 119 Query: 116 HHLYPNKSKIIFDFGTALTASCISHSGETLGAIIAPGIITSLKSLIQDTAQLLEIELQAP 175 +H Y + I+ DFG+++ +S GE LG IAPG+ S + +A L +EL P Sbjct: 120 YHKYG-TAAIVVDFGSSICVDVVSAKGEFLGGAIAPGVQVSSDAAAARSAALRRVELTRP 178 Query: 176 KSVLGLDTVSCMQSGMVYGYLGMVEGFIERINREI----GEETFVIATGGVSHVYKPLSD 231 +SV+G +TV CMQ+G V+G+ G+V+G + RI ++ G + V+ATG + + P Sbjct: 179 RSVIGKNTVECMQAGAVFGFAGLVDGLVNRIRDDVDGFSGADVAVVATGHTAPLVLPDLR 238 Query: 232 KIHIADRLHTLKGLYFL 248 + DR TL GL + Sbjct: 239 TVEHYDRHLTLDGLRLV 255
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 39.1 bits (91), Expect = 9e-06 Identities = 22/124 (17%), Positives = 43/124 (34%), Gaps = 4/124 (3%) Query: 201 FEYGQFYFNRKNYEEAIRGFDYLLAINSNSVGVYANKAACYEAMQEWDKAVEVYEEMLEL 260 + + YE+A + F L ++ + AC +AM ++D A+ Y + Sbjct: 40 YSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIM 99 Query: 261 EYTKAYTYYKIGLCHKENKKPLLALKSFQKSLVEDPQFYLSMMEQSFLYEEMGQMREALH 320 + + + C + + A + L + E L + M EA+ Sbjct: 100 DIKEPRFPFHAAECLLQKGELAEA----ESGLFLAQELIADKTEFKELSTRVSSMLEAIK 155 Query: 321 FAKE 324 KE Sbjct: 156 LKKE 159 Score = 32.2 bits (73), Expect = 0.002 Identities = 16/97 (16%), Positives = 33/97 (34%) Query: 307 FLYEEMGQMREALHFAKEATVLNETNVDYQKRLAFLYIDSELFEESLPCLEKMVEAEPDR 366 F + G+ +A + VL+ + + L ++ ++ + Sbjct: 44 FNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIKE 103 Query: 367 FYNWYAYTEVLMLVGQYNKALEILQKAISLHKDRAEF 403 + E L+ G+ +A L A L D+ EF Sbjct: 104 PRFPFHAAECLLQKGELAEAESGLFLAQELIADKTEF 140 Score = 32.2 bits (73), Expect = 0.002 Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 7/69 (10%) Query: 252 EVYEEMLELEYTKAYTYYKIGLCHKENKKPLLALKSFQKSLVEDPQFYLSMMEQSFLYEE 311 E+ + LE Y+ A+ Y+ G K A K FQ V D + + Sbjct: 30 EISSDTLEQLYSLAFNQYQSG-------KYEDAHKVFQALCVLDHYDSRFFLGLGACRQA 82 Query: 312 MGQMREALH 320 MGQ A+H Sbjct: 83 MGQYDLAIH 91 Score = 29.1 bits (65), Expect = 0.025 Identities = 16/88 (18%), Positives = 26/88 (29%) Query: 173 FYKLNKNDDAIKFLNHYIEEFPFSETAWFEYGQFYFNRKNYEEAIRGFDYLLAINSNSVG 232 Y+ K +DA K + + G Y+ AI + Y ++ Sbjct: 46 QYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIKEPR 105 Query: 233 VYANKAACYEAMQEWDKAVEVYEEMLEL 260 + A C E +A EL Sbjct: 106 FPFHAAECLLQKGELAEAESGLFLAQEL 133
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 31.7 bits (72), Expect = 0.006 Identities = 24/139 (17%), Positives = 42/139 (30%), Gaps = 19/139 (13%) Query: 180 LSSLIAEVAQSYYELLALDSQYSYLKKYIELQRKALEVSKIQKQAAATTELSVKKFEAEL 239 L AE + ++ K ++ L I K A E + EL Sbjct: 209 LDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNEL 268 Query: 240 AKSSANLYTVQQSILEKENDINLLLGRFYQPIPRSSAEFLELVPQSIKTGIPSELLANRP 299 + L ++ IL + + +LV Q K I +L Sbjct: 269 RVYKSQLEQIESEILSAKEEY-------------------QLVTQLFKNEILDKLRQTTD 309 Query: 300 DVKQAELELEAAKLDVEAA 318 ++ LEL + +A+ Sbjct: 310 NIGLLTLELAKNEERQQAS 328
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 912 bits (2358), Expect = 0.0 Identities = 378/1039 (36%), Positives = 588/1039 (56%), Gaps = 15/1039 (1%) Query: 1 MFKTFIKRPVLSIVISLIIVFLGVLSLLSLPITQFPSISPPKVNITAEYPGANNELLVKS 60 M FI+RP+ + V+++I++ G L++L LP+ Q+P+I+PP V+++A YPGA+ + + + Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VVIPLEQALNGVQGMKYITSDAGNDGVASIQVVFNLGTDPNLAAVNVQNRVSSAINKLPP 120 V +EQ +NG+ + Y++S + + G +I + F GTDP++A V VQN++ A LP Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 121 LVVREGVKITREEPNMLMYVNLYSDDPKADQKFLFNYADINILPELRRVNGVGFADILGT 180 V ++G+ + + + LM SD+P Q + +Y N+ L R+NGVG + G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG- 179 Query: 181 REYAMRIWLKPDRLTAYNISTDEVMEALSSQSLEASPGRTGESSGKRSQAFEYVLKYPGR 240 +YAMRIWL D L Y ++ +V+ L Q+ + + G+ G + Q + R Sbjct: 180 AQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 241 FDNEKDYGNIIVKANSNGEFVRLKDVADVEFGSSMYDIYSTLNGKPSAAITIKQSYGSNA 300 F N +++G + ++ NS+G VRLKDVA VE G Y++ + +NGKP+A + IK + G+NA Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 301 SEVIKNVKTLLEELNKTSFPKGMHYEISYDVSRFLDASMEKVVHTLFEAFVLVGIVVFIF 360 + K +K L EL + FP+GM YD + F+ S+ +VV TLFEA +LV +V+++F Sbjct: 300 LDTAKAIKAKLAEL-QPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLF 358 Query: 361 LGDWRSTLIPALAVPVSLIGAFAVMSSFGITVNMITLFALVMAIGVVVDDAIVVIEAVHA 420 L + R+TLIP +AVPV L+G FA++++FG ++N +T+F +V+AIG++VDDAIVV+E V Sbjct: 359 LQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER 418 Query: 421 KMEEKHLSPLEATQEAMGEISGAIIAITLVMAAVFIPVAFMSGPVGVFYRQFSITMASSI 480 M E L P EAT+++M +I GA++ I +V++AVFIP+AF G G YRQFSIT+ S++ Sbjct: 419 VMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAM 478 Query: 481 ILSGIVALTLTPALCALILKNNHGKERKKTPINRFIDGFNRVFAKGTKRYETLLYKTVSK 540 LS +VAL LTPALCA +LK F FN F Y + K + Sbjct: 479 ALSVLVALILTPALCATLLKPV--SAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGS 536 Query: 541 KWITLGGLSVFCFLVYFLNNGLPSGFIPNEDQGMIYAIVQTPPGSTIERTNQQALKIQKI 600 L ++ + L LPS F+P EDQG+ ++Q P G+T ERT + ++ Sbjct: 537 TGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDY 596 Query: 601 A--EGIDGVKSVSSLAGYEILSEGTGANSGTCLINLKNWDERDK---SATEIIEELEEKC 655 V+SV ++ G+ G N+G ++LK W+ER+ SA +I + + Sbjct: 597 YLKNEKANVESVFTVNGF--SFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMEL 654 Query: 656 KDIGGSNIEFFQPPSIPGYGAAGGFELRLLDKTGSNDYAKMEEVSRNFVKELSKRP-ELA 714 I + F P+I G A GF+ L+D+ G + + + + ++ P L Sbjct: 655 GKIRDGFVIPFNMPAIVELGTATGFDFELIDQAG-LGHDALTQARNQLLGMAAQHPASLV 713 Query: 715 SVFTFYSASFPQYMLKVDNDIAEQKGVSIGSAMNNLSTLIGSNYETGFIRFGKPYKVIVQ 774 SV Q+ L+VD + A+ GVS+ +ST +G Y FI G+ K+ VQ Sbjct: 714 SVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQ 773 Query: 775 AAPQYRALPQDIMNLYVKNDKEEMVPYSDFMHMEKVYGMSEITRHNMYNSAQISGYPSEG 834 A ++R LP+D+ LYV++ EMVP+S F VYG + R+N S +I G + G Sbjct: 774 ADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPG 833 Query: 835 YSSGQAIEAIKETADKTLPRGYGIDWAGISKDEVGRGNEAVYIFLICLGFVYLILSAQYE 894 SSG A+ ++ A K LP G G DW G+S E GN+A + I V+L L+A YE Sbjct: 834 TSSGDAMALMENLASK-LPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYE 892 Query: 895 SFILPLPVILCLPAGIFGAFLFLKLFGLENNIYAQVALVMLIGLLGKNAVLIVEYAVQRK 954 S+ +P+ V+L +P GI G L LF +N++Y V L+ IGL KNA+LIVE+A Sbjct: 893 SWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLM 952 Query: 955 -NEGATILKAAIEGAVTRFRPILMTSFAFIAGLIPLALATGPGAIGNRTIGTAAAGGMFI 1013 EG +++A + R RPILMTS AFI G++PLA++ G G+ +G GGM Sbjct: 953 EKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVS 1012 Query: 1014 GTIFGVVLIPGLYLIFGKI 1032 T+ + +P +++ + Sbjct: 1013 ATLLAIFFVPVFFVVIRRC 1031
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 50.2 bits (120), Expect = 6e-09 Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 6/95 (6%) Query: 59 EVRAQGKGFLDKIYVDEGQYVKAGQVLFRIMPQVYEAELMKTRAEVEQARIEYQNASILA 118 E++ + +I V EG+ V+ G VL ++ EA+ +KT++ + QAR+E Sbjct: 98 EIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLE--QTRYQI 155 Query: 119 GNNIVSKNE----KALAKAKLDAASAEMRMAQLHL 149 + + N+ K + S E + L Sbjct: 156 LSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSL 190 Score = 39.0 bits (91), Expect = 2e-05 Identities = 25/109 (22%), Positives = 51/109 (46%), Gaps = 8/109 (7%) Query: 75 EGQYVKAGQVLFRIMPQVYEAELMKTRAEVEQARIEYQNASILAGNNIVSKNEKALAKAK 134 E +YV+A L +VY+++L + +E+ A+ EYQ + L N I+ K + Sbjct: 258 ENKYVEAVNEL-----RVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQT--TDN 310 Query: 135 LDAASAEMRMAQLHLSFTTIRAPFSGIINRIPLK-LGSLIEEGDLLTSL 182 + + E+ + + IRAP S + ++ + G ++ + L + Sbjct: 311 IGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVI 359
>SALSPVBPROT#Salmonella virulence plasmid 65kDa B protein signature. Length = 591 Score = 29.7 bits (66), Expect = 0.024 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%) Query: 160 KDYSVVEADEYDRSFLNLAPDWAIITSTDADHLDIYGDKSTIEKGFRDFAHLVSEERQLF 219 K+Y+ + D++F++ +PD A I T L+IY +K + D AH E LF Sbjct: 485 KEYTTIGNIIIDKAFMSTSPDKAWINDTI---LNIYLEKGHKGRILGDVAHFKGEAEMLF 541
>TOXICSSTOXIN#Staphylococcal toxic shock syndrome toxin signature. Length = 234 Score = 28.8 bits (64), Expect = 0.013 Identities = 29/149 (19%), Positives = 53/149 (35%), Gaps = 25/149 (16%) Query: 81 QRVPVFRLSKGKKEFYVDEKGVEFPINRNYSASCMLISGNVQPEEYPQLIE--LVKKINQ 138 P F + K + Y ISG E+ P IE L K++ Sbjct: 91 YYSPAFTKGEKVDLNTKRTKKSQHTSEGTYIHFQ--ISGVTNTEKLPTPIELPLKVKVHG 148 Query: 139 DDFSKKFFIGVVKERENYYLIANEENYRVELGSLENIDFKVKGFKAFVEKYLVYQPSDK- 197 D K+ ++ ++ +DF+++ + + +Y+ SDK Sbjct: 149 KDSPLKY----------GPKFDKKQL------AISTLDFEIR--HQLTQIHGLYRSSDKT 190 Query: 198 --YTKISLKYDNQIVTTLSKGYKEETYKE 224 Y KI++ + + LSK ++ T K Sbjct: 191 GGYWKITMNDGSTYQSDLSKKFEYNTEKP 219
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 62.5 bits (152), Expect = 9e-13 Identities = 56/216 (25%), Positives = 90/216 (41%), Gaps = 23/216 (10%) Query: 151 KRLEANFHVVVGQMSSIKNIS-RCVKE----AGLEMESLTLEPLASSEAVLTKEEKEAGV 205 + + V+V + R ++E AG L EP+A++ + G Sbjct: 102 SFMRPSPRVLVCVPVGATQVERRAIRESAQGAGAREVFLIEEPMAAAIGAGLPVSEATGS 161 Query: 206 AIVDIGGGTTDIAIFKDNIIRHTCVIPYGGGIITEDI------KDGCSIIEKHAEQLKVR 259 +VDIGGGTT++A+ N + ++ + GG E I G I E AE++K Sbjct: 162 MVVDIGGGTTEVAVISLNGVVYSSSVRIGGDRFDEAIINYVRRNYGSLIGEATAERIKHE 221 Query: 260 FGSAVPELEKESTFVTIPGLHGRTEKEISLKTLAKIIHARVEEILEMVNTELKAYGAHEK 319 GSA P E V GR E + + +E + E + + A + Sbjct: 222 IGSAYPGDEVREIEV-----RGRNLAEGVPRGFTLNSNEILEALQEPLTGIVSAVMVALE 276 Query: 320 KRK--LIA-----GIVLTGGGSNLKHLRQLANYITG 348 + L + G+VLTGGG+ L++L +L TG Sbjct: 277 QCPPELASDISERGMVLTGGGALLRNLDRLLMEETG 312
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 78.9 bits (194), Expect = 2e-19 Identities = 49/194 (25%), Positives = 90/194 (46%), Gaps = 3/194 (1%) Query: 2 SKKFQHKNILITGGASGIGKIMARLSLEKGAKVIIWDIDQSKIDETILQFSSLG-SIFGY 60 +K + K ITG A GIG+ +AR +GA + D + K+++ + + + Sbjct: 3 AKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAF 62 Query: 61 KVDVSNYDEVQHFAIKTKQKIGNVDILINNAGIVVGKYFHEHSQKDILKTIEINTNAPMV 120 DV + + + ++++G +DIL+N AG++ H S ++ T +N+ Sbjct: 63 PADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFN 122 Query: 121 ITNLFLQDMLTQNSGHICNIASSAGLVSNPKMSVYAGSKWAVVGWSDSLRLEMEQLKKNI 180 + + M+ + SG I + S+ V M+ YA SK A V ++ L LE+ + NI Sbjct: 123 ASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAE--YNI 180 Query: 181 KVTTIMPYYINTGM 194 + + P T M Sbjct: 181 RCNIVSPGSTETDM 194
>PF05844#YopD protein Length = 295 Score = 28.1 bits (62), Expect = 0.043 Identities = 19/108 (17%), Positives = 32/108 (29%), Gaps = 9/108 (8%) Query: 150 ADVTSFDGGYGSAYLAKMVGQKKAREIFFLGRNYSAQEAFEMGMVNKVVPHEELEDTAYE 209 A ++ G G+ K + Q+K + GRN +M + K E+ + Sbjct: 131 ALASAVVGSLGALKNGKAISQEKTLQKNIDGRNELIDA--KMQALGKTS-DEDRKIVGKV 187 Query: 210 WAQEILAKSPTSIRM-LKFAMNLTDDGMVGQQVFAGEATRLAYMTDEA 256 WA + S F QV M + + Sbjct: 188 WAADQAQDSVALRAAGRAFESR-----NGALQVANTVIQSFVQMANAS 230
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 42.1 bits (99), Expect = 3e-06 Identities = 39/208 (18%), Positives = 67/208 (32%), Gaps = 37/208 (17%) Query: 113 LVQLQQDYLLAKSNFGYAEKDYQRQK---DLNQSQASSDKAMQMAHTEAKNQNISINALA 169 V+ + + KS E + K L ++ ++ T I L Sbjct: 261 YVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDN-----IGLLT 315 Query: 170 ERLRILGVNPDKITPQSIQRSVALRAPISGYITRVNVN-IGQYVSPVDKLFEIVNTQDTH 228 L Q++ +RAP+S + ++ V+ G V+ + L IV DT Sbjct: 316 LELAKNEER---------QQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTL 366 Query: 229 LI-LKAFEKDLSHLKIGQ----KVYAYANQNPDKKYTASIILIGKNFDSD---------- 273 + KD+ + +GQ KV A+ + I + D Sbjct: 367 EVTALVQNKDIGFINVGQNAIIKVEAF-PYTRYGYLVGKVKNINLDAIEDQRLGLVFNVI 425 Query: 274 RSVPVHCHFVGGQP-DLVPGSFMNADVE 300 S+ +C G + L G M E Sbjct: 426 ISIEENCLSTGNKNIPLSSG--MAVTAE 451 Score = 39.0 bits (91), Expect = 2e-05 Identities = 17/102 (16%), Positives = 29/102 (28%), Gaps = 7/102 (6%) Query: 59 EISSKITLNGNIDVPPQGMASVSSPSGGYIKSAKFMPGNFVNKGDVLAILEDP----NLV 114 ++ T NG + + +K G V KGDVL L + + Sbjct: 79 QVEIVATANGKL-THSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTL 137 Query: 115 QLQQDYLLAKSNFG--YAEKDYQRQKDLNQSQASSDKAMQMA 154 + Q L A+ L + + + Q Sbjct: 138 KTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNV 179
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 691 bits (1785), Expect = 0.0 Identities = 224/1052 (21%), Positives = 423/1052 (40%), Gaps = 47/1052 (4%) Query: 23 FSIKNKLIIGLFTLALIIYGIFEVRKLPIDAVPDITDNQVQIITVSPSLGAPDVERFITF 82 F I+ + + + L++ G + +LP+ P I V + P A V+ +T Sbjct: 4 FFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVTQ 63 Query: 83 PLEQANNNIQGIKQIRSFS-RFGLSVITIVFKDDVDIHLARQQVSERLQQVSKDIPAELG 141 +EQ N I + + S S G IT+ F+ D +A+ QV +LQ + +P E+ Sbjct: 64 VIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEVQ 123 Query: 142 VPTMAPITTGLGEIYQYVVRPKKGYEHRYDAMKLRTIQDWVVRRQLLGIEGVADVASFGG 201 ++ + + + V+ L + GV DV FG Sbjct: 124 QQGISVEKSSSSYLMVAGFVSDNPG---TTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 202 YLKQYEIAINPTQLKAMGVTMQEVFNALQSNNQNTGGAYIEKGPTV------LFIRTEGL 255 I ++ L +T +V N L+ N + P + I + Sbjct: 181 Q-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 256 VGKIEDIENTVVKTLPDGTPILVKNIGNVGYGSATRYGAMTYNGKGEVAGAVVMMMKGAN 315 E+ ++ DG+ + +K++ V G NGK AG + + GAN Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGK-PAAGLGIKLATGAN 298 Query: 316 SNQVIKNVKERIDEIQKTLPEGVKIEPFLDRTKMVNNAIGTVQKNLMEGALIVIFVLVLF 375 + K +K ++ E+Q P+G+K+ D T V +I V K L E ++V V+ LF Sbjct: 299 ALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLF 358 Query: 376 LGNFRAGFLVASVIPLSMLFAIIMMNIFGVSGNLMSLG--ALDFGLIVDGAVIIVEAVLH 433 L N RA + +P+ +L ++ FG S N +++ L GL+VD A+++VE V Sbjct: 359 LQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV-E 417 Query: 434 KLHELKKSDKSELSQQEMNDEVESSAGKMMNSAVFGQIIILIVYLPILTLQGIEGKMFKP 493 ++ K E +++ M ++ + V +++ V++P+ G G +++ Sbjct: 418 RVMMEDKLPPKEATEKSM--------SQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQ 469 Query: 494 MAQTVAFALLGAFILSLTYVPMMSSLVLSKKINFKK-------NFSDKMMEKVEAFYEKT 546 + T+ A+ + +++L P + + +L + + + Y + Sbjct: 470 FSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNS 529 Query: 547 LAKILNRSKVVVIAILALFVFSVFILTRLGGEFIPSLPEGDFAVDTRVLTGSNLKTSTDA 606 + KIL + ++ + V + RL F+P +G F ++ G+ + + Sbjct: 530 VGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKV 589 Query: 607 VQKSSQILLKK-FPEIEKIVGKTGSSEIPTDPMPIDASDMMVILKPREEWTSAKTYEELS 665 + + + LK +E + G S +A V LKP EE E + Sbjct: 590 LDQVTDYYLKNEKANVESVFTVNGFS---FSGQAQNAGMAFVSLKPWEERN---GDENSA 643 Query: 666 EKMSAELKKNMLGVTYSFQYPVNM-RFNELMTGARQDV-VCKIFGENLDTLKVYSEKL-G 722 E + K + + F P NM EL T D + G D L +L G Sbjct: 644 EAVIHRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLG 703 Query: 723 EISKGIKGAQNIYVEPISGIPQIVISYNRAKIAQYGVNISEINRIVNTAFAGQSTGSVYE 782 ++ ++ + Q + ++ K GV++S+IN+ ++TA G + Sbjct: 704 MAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFID 763 Query: 783 GEKRFDLVVRLSGEQRKNIDDVRNLLISTPSGTEIPLSSIADVELKESVNQIQRENAQRR 842 + L V+ + R +DV L + + +G +P S+ +++R N Sbjct: 764 RGRVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPS 823 Query: 843 IIVGFNVRNRDIQTTVADLQTQVEQ-KLKLPPGYFIKYGGTFENLQQAKARLSIAVPASL 901 + + + D +E KLP G + G + + + V S Sbjct: 824 MEIQGEAAPGT---SSGDAMALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISF 880 Query: 902 LMIFLMLYFAFRSIKYGMLIFTAIPLSAIGGILALWLRGMNFSISAGVGFIALFGVAVLN 961 +++FL L + S + + +PL +G +LA L + VG + G++ N Sbjct: 881 VVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKN 940 Query: 962 GIVLIAEFNRQKALQ--TSLKDAVRAGGKNRLRPVLMTAFVASLGFLPMATSTGEGAEVQ 1019 I+++ EF + + + +A + RLRP+LMT+ LG LP+A S G G+ Q Sbjct: 941 AILIV-EFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQ 999 Query: 1020 RPLATVVIGGLLLATFLTLYLLPILYIWFESK 1051 + V+GG++ AT L ++ +P+ ++ Sbjct: 1000 NAVGIGVMGGMVSATLLAIFFVPVFFVVIRRC 1031
>ECOLIPORIN#E.coli/Salmonella-type porin signature. Length = 383 Score = 26.4 bits (58), Expect = 0.034 Identities = 13/43 (30%), Positives = 23/43 (53%) Query: 24 VEHRNDNSEMSFGQFITLHYFSGDVHDDDYEEDMKLPFKSQNQ 66 + +++ N +G+ LHYFS D D + M++ FK + Q Sbjct: 24 IYNKDGNKLDLYGKVDGLHYFSDDSSKDGDQTYMRVGFKGETQ 66
>BONTOXILYSIN#Bontoxilysin signature. Length = 1196 Score = 27.9 bits (62), Expect = 0.039 Identities = 10/37 (27%), Positives = 20/37 (54%), Gaps = 3/37 (8%) Query: 4 KYNKQLKFRDLGLMDYPDAFEYQENLMKEIIELKLKN 40 +Y Q + +L M + QE+L+K+I++ K + Sbjct: 675 EYYSQ--YFELICMAK-QSILAQESLVKQIVQNKFTD 708
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 29.9 bits (67), Expect = 0.003 Identities = 13/101 (12%), Positives = 30/101 (29%), Gaps = 14/101 (13%) Query: 48 DGVGYVWVQGDEVLGYAVLMLNNEPAYDNIEGEWLSNGDYLVVHRVVVHDRCLGKGIAKQ 107 +++ + +G + N W Y ++ + V KG+ Sbjct: 64 GKAAFLYYLENNCIGRIKIRSN-----------W---NGYALIEDIAVAKDYRKKGVGTA 109 Query: 108 MFLWIEGWAKQQNIYSVKVDTNYDNQPMLHILQHLGYQYCG 148 + WAK+ + + ++T N H + Sbjct: 110 LLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFIIGA 150
>MYCMG045#Hypothetical mycoplasma lipoprotein (MG045) signature. Length = 483 Score = 29.3 bits (65), Expect = 0.019 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 5/61 (8%) Query: 30 FDSFTEETNGILAYIPKNDLNEDAIKSLYIFEQEGVEIDYTYTEMPNINWNEEWEKNFSP 89 FD +TE +L +LNE+ K + E ++ YT + +I WN+ EK SP Sbjct: 411 FDYYTETLKALLEKEDSAELNENEKKLV-----ETIKKAYTIEKDSSIRWNQLVEKPISP 465 Query: 90 I 90 + Sbjct: 466 L 466
>TETREPRESSOR#Tetracycline repressor protein signature. Length = 218 Score = 31.4 bits (71), Expect = 0.004 Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 10/77 (12%) Query: 25 GLSGRNYAQNGNNCPDFKTGADQPELYLPLLKNKKVGVVTNQTGLVLKPQKHHPTTIDTL 84 GL+ R AQ K G +QP LY + KNK+ ++ +L + Sbjct: 24 GLTTRKLAQ--------KLGIEQPTLYWHV-KNKR-ALLDALAVEILARHHDYSLPAAGE 73 Query: 85 SIVDFLRENTIDIRRVF 101 S FLR N + RR Sbjct: 74 SWQSFLRNNAMSFRRAL 90
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 181 bits (462), Expect = 7e-62 Identities = 78/147 (53%), Positives = 106/147 (72%), Gaps = 1/147 (0%) Query: 4 AVFPGSFDPITLGHYDIIERASKLFDRLIIAIGQNSQKHYMFPLEKRIEFIEKSVSHFGN 63 A++PGSFDPIT GH DIIER +LFD++ +A+ +N K MF +++R+E I K+++H N Sbjct: 3 AIYPGSFDPITFGHLDIIERGCRLFDQVYVAVLRNPNKQPMFSVQERLEQIAKAIAHLPN 62 Query: 64 VEVDSFEGLTVDYCMEKDAQFILRGLRNPADFEFEKAIAHTNRTLAHKKLETVFLLTSSG 123 +VDSFEGLTV+Y ++ A ILRGLR +DFE E +A+TN+TLA LETVFL TS+ Sbjct: 63 AQVDSFEGLTVNYARQRQAGAILRGLRVLSDFELELQMANTNKTLAS-DLETVFLTTSTE 121 Query: 124 KSFISSSIVREIISHGGEYELLVPDAV 150 SF+SSS+V+E+ GG E VP V Sbjct: 122 YSFLSSSLVKEVARFGGNVEHFVPSHV 148