>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 81.0 bits (200), Expect = 5e-19 Identities = 58/300 (19%), Positives = 128/300 (42%), Gaps = 16/300 (5%) Query: 80 DRMNKALLEGKDLSKMLGELG--FSDTVITQVALADLHGNISRSLLKIESYLANLLLVRK 137 + ++EG L+ + F VA + G++ L ++ Y +R Sbjct: 108 AAVRSKVMEGHSLADAMKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRS 167 Query: 138 KVIEVATYPLILLTFLVLIMIGLRHYLMPQLGEN--------NFATSLITNVPNIF---- 185 ++ + YP +L + ++ L ++P++ E +T ++ + + Sbjct: 168 RIQQAMIYPCVLTVVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFG 227 Query: 186 -LLLLAVVLIFSLIFYIVQKRLSRIKVACFLTTIPLVGSYVKLYLTAYYAREWGNLLSQG 244 +LLA++ F ++++ R+ L +PL+G + TA YAR L + Sbjct: 228 PWMLLALLAGFMAFRVMLRQEKRRVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASA 287 Query: 245 VELDQIVKVMQNQKSKLF-REIGYDMEEGFLSGKAFHQKVLDYPFFLTELSLMIEYGQVK 303 V L Q +++ + S + R + G + H+ + F + MI G+ Sbjct: 288 VPLLQAMRISGDVMSNDYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMIASGERS 347 Query: 304 AKLGTELDIYADEKWEDFFTKLARATQLIQPVIFIFVALIIVMIYAAMLLPMYQNMEILS 363 +L + L+ AD + +F +++ A L +P++ + +A +++ I A+L P+ Q ++S Sbjct: 348 GELDSMLERAADNQDREFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPILQLNTLMS 407
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 46.4 bits (110), Expect = 1e-09 Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 1/64 (1%) Query: 9 KDKKVKAFTLLEMLVVLIIISVLLLLFVPNLSKQKESVTRTGNAAVVKVVESQAELFELQ 68 K + FTLLE++VV++II VL L VPNL KE + + + +E+ ++++L Sbjct: 3 ATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKL- 61 Query: 69 ETGR 72 + Sbjct: 62 DNHH 65
>BINARYTOXINA#Clostridial binary toxin A signature. Length = 454 Score = 25.8 bits (56), Expect = 0.042 Identities = 16/88 (18%), Positives = 40/88 (45%), Gaps = 4/88 (4%) Query: 18 LKEIRDYISQNYSSTSGQRKMEQIINDIEKLEVFPEVGFDADEKYGSEISNYHSTRGYTL 77 ++ D++ ++ ++K + + + L+ + + +K +ISNY TR Y Sbjct: 44 IERPEDFLKDKENAIQWEKKEAERVE--KNLDTLEKEALELYKKDSEQISNYSQTRQYF- 100 Query: 78 SKDYIVLYHIEEEENRVVIDYLLPTRSD 105 DY + + E+E + + + + + D Sbjct: 101 -YDYQIESNPREKEYKNLRNAISKNKID 127
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 27.6 bits (61), Expect = 0.006 Identities = 12/40 (30%), Positives = 22/40 (55%) Query: 57 ELSPKITQFAQLLEDINQQLLKVADVVEQTDSDIASQINK 96 ++ P+I + +L +I Q++ VAD T SD+ + N Sbjct: 489 KVKPQINEGDSVLLEIEQEVSSVADAASSTSSDLGATFNT 528
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 33.6 bits (77), Expect = 0.001 Identities = 44/186 (23%), Positives = 77/186 (41%), Gaps = 18/186 (9%) Query: 20 VLYDYGNSTWIASMGGLGQKILGIYQIVELLVSIVLNPFGGALADRFQRRKILLITDAIC 79 +L D +S + + G+ +L +Y +++ + P GAL+DRF RR +LL++ A Sbjct: 31 LLRDLVHSNDVTAHYGI---LLALYALMQFACA----PVLGALSDRFGRRPVLLVSLAGA 83 Query: 80 AIMCFLLSFIGDDKVMVYGLIVANAILAVSNAFSSPAYKSYIPEIVDKADIITYNANLET 139 A+ +++ V+ G IVA A +YI +I D + + + Sbjct: 84 AVDYAIMATAPFLWVLYIGRIVAGITGAT-----GAVAGAYIADITDGDERARHFGFMSA 138 Query: 140 IVQIISVSSPVLGFLIFNNFGIRITLIVDA----ITFLISFLFLY-AIKVERVQLSKQEK 194 V+ PVLG L+ F A + FL L + K ER L ++ Sbjct: 139 CFGFGMVAGPVLGGLM-GGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREAL 197 Query: 195 VAIKNI 200 + + Sbjct: 198 NPLASF 203
>TYPE3OMBPROT#Type III secretion system outer membrane B protein family signature. Length = 538 Score = 32.0 bits (72), Expect = 0.005 Identities = 19/75 (25%), Positives = 40/75 (53%), Gaps = 3/75 (4%) Query: 238 DSTYLGIVDGKGADLYALGKLLQEELGEQIAIGSSPQMLAKLSREFVDIMNAR-FEVIKQ 296 D+ LG V+ + + L K++ EE+ Q+ I + ++ K+ + F D +N + + + + Sbjct: 99 DTYKLGEVNKR--HINELNKVISEEIRAQLGIKNKKELQTKIKQIFTDYLNNKNWGPVNK 156 Query: 297 NSSLNADAYDLEMTP 311 N S + Y ++TP Sbjct: 157 NISHHGKNYGFQLTP 171
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 63.1 bits (153), Expect = 2e-14 Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 6/85 (7%) Query: 22 KQKVILSAIELFASQGFHGTSTAQLAKNAEVSQATIYKYFETKDKLLVFILELIVQTIGR 81 +Q ++ A+ LF+ QG TS ++AK A V++ IY +F+ K L I EL IG Sbjct: 13 RQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGE 72 Query: 82 PFFTELSTF------STKEELIHFF 100 + F +E LIH Sbjct: 73 LELEYQAKFPGDPLSVLREILIHVL 97
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 53.8 bits (129), Expect = 2e-10 Identities = 44/166 (26%), Positives = 81/166 (48%), Gaps = 3/166 (1%) Query: 197 RTSGTLDRLLATPVKRSDIVFGYMLSYGILAIIQTIVIVLSTIWLLDIQVVGSIFSVIIV 256 T + +L T ++ DIV G M A + I + L Q + ++++ ++ Sbjct: 95 EGQRTWEAMLYTQLRLGDIVLGEMAWAATKAALAGAGIGVVAAALGYTQWLSLLYALPVI 154 Query: 257 NFILALVALSLGILMSTLAKSEFQMMQFIPLIIMPQLFFSG-IIPLENMANWAQTVGKIL 315 L SLG++++ LA S + + L+I P LF SG + P++ + QT + L Sbjct: 155 ALT-GLAFASLGMVVTALAPSYDYFIFYQTLVITPILFLSGAVFPVDQLPIVFQTAARFL 213 Query: 316 PLSYSGDALTKIIMYGQGLSNVSSNLLVLLLFLIILTIANIFGLKR 361 PLS+S D L + IM G + +V ++ L ++++I + L+R Sbjct: 214 PLSHSID-LIRPIMLGHPVVDVCQHVGALCIYIVIPFFLSTALLRR 258
>PF05272#Virulence-associated E family protein Length = 892 Score = 31.6 bits (71), Expect = 0.003 Identities = 19/90 (21%), Positives = 29/90 (32%), Gaps = 22/90 (24%) Query: 35 LIGPSGAGKSTLIKTMLGME-KADKGTALVLDTQMPDRNILNQIGYMA-QSDALYESLTA 92 L G G GKSTLI T++G++ +D D Y YE Sbjct: 601 LEGTGGIGKSTLINTLVGLDFFSD---THFDIGTGKD-------SYEQIAGIVAYE---- 646 Query: 93 LENLLFFGKMKGIQKTELKQQITHISKVVD 122 +M ++ + + S D Sbjct: 647 ------LSEMTAFRRADAEAVKAFFSSRKD 670
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 27.9 bits (62), Expect = 0.012 Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 11/66 (16%) Query: 78 EELKNKVKLVSRQLDQLL------YLELTNFHALTKGNDFDIQDLESVHSRFDPMQHELI 131 E K LV L+ L Y +L FH KG F ++H +F+ + Sbjct: 4 ENAKTNQTLVENSLNTQLSNWFLLYSKLHRFHWYVKGPHF-----FTLHEKFEELYDHAA 58 Query: 132 ARIDDI 137 +D I Sbjct: 59 ETVDTI 64
>PF06580#Sensor histidine kinase Length = 349 Score = 36.8 bits (85), Expect = 2e-04 Identities = 21/89 (23%), Positives = 44/89 (49%), Gaps = 12/89 (13%) Query: 254 AQARQLKAISIVSSVEMEEKQ-RAAPH-LFN-LSDIQGLAAKQWGFEPTKTERLIESL-- 308 A+ Q K S+ ++ + + PH +FN L++I+ L + +PTK ++ SL Sbjct: 147 AEIDQWKMASMAQEAQLMALKAQINPHFMFNALNNIRALILE----DPTKAREMLTSLSE 202 Query: 309 YLKKYLSYPRTDTRFIT-EEEFDYLKNYL 336 ++ L ++ R ++ +E + +YL Sbjct: 203 LMRYSLR--YSNARQVSLADELTVVDSYL 229
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 38.7 bits (90), Expect = 7e-05 Identities = 34/171 (19%), Positives = 63/171 (36%), Gaps = 19/171 (11%) Query: 279 LKGDQERLEGFKERLMNRVKGQEDAIEAVVDAVTIAQAGLQNEKRPLASFLFLGPTGVGK 338 K +LE + M V G+ A++ + +A+ + + + G +G GK Sbjct: 122 PKRRPSKLEDDSQDGMPLV-GRSAAMQEIYR--VLARLMQTD-----LTLMITGESGTGK 173 Query: 339 TELAKAIAEALFDDEAAMIRFDMSEYKQKEDVTKLIGNRATRIKGQLTEGVKQKPYCV-- 396 +A+A+ + + +M+ + ++L G+ KG T + Sbjct: 174 ELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHE----KGAFTGAQTRSTGRFEQ 229 Query: 397 -----LLLDEIEKAHSEVMDLFLQVLDDGRLTDSSGRLISFKNTIVIMTTN 442 L LDEI + L+VL G T GR + ++ TN Sbjct: 230 AEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATN 280
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 34.3 bits (78), Expect = 0.002 Identities = 40/218 (18%), Positives = 78/218 (35%), Gaps = 16/218 (7%) Query: 73 VVDEAQKQKDQSQQNLVKATSTVTEAEKVAAEATPEVVKEAIKAVTEAKEAVTDAEANVV 132 EA++++ + ++ + + AE E + E KAV A++ ++ A++ VV Sbjct: 149 AFQEAEQRRKEIEREKAETERQLKLAEAE--EKRLAALSEEAKAVEIAQKKLSAAQSEVV 206 Query: 133 DAQKTEQKANQEVQSQAKTVDENVKVVADKESEVKQAEGVVTTAQEAIDSKTANTNAS-- 190 + N + S D +K +A K +E+ QA E + + N Sbjct: 207 KMDGEIKTLNSRLSSSIHARDAEMKTLAGKRNELAQASAKYKELDELVKKLSPRANDPLQ 266 Query: 191 ------------EAEKAVTEKQTKLETAETNLTEAQKQDAKIAEEKRLAEQEVVNKQLAV 238 A K EKQ ++ +ET + +I + V Sbjct: 267 NRPFFEATRRRVGAGKIREEKQKQVTASETRINRINADITQIQKAISQVSNNRNAGIARV 326 Query: 239 TDTQTLLKKLVTEINNEKVSTSLENQAYFNQRDGSWAG 276 + + LKK + N ++ +++ F Q G Sbjct: 327 HEAEENLKKAQNNLLNSQIKDAVDATVSFYQTLTEKYG 364
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 31.5 bits (71), Expect = 0.002 Identities = 21/78 (26%), Positives = 27/78 (34%) Query: 41 TPPNSVDPSLPTDTTDPSTPVVPEKLPDTSKPAEPETPKEELPAPVDPTTPSAGKEDKQE 100 P SV P D P P + +P P+ APV P + K + Sbjct: 42 AQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPK 101 Query: 101 TVPGQAETPKEEVKPENP 118 V E PK +VKP Sbjct: 102 PVKKVQEQPKRDVKPVES 119
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 45.4 bits (107), Expect = 9e-07 Identities = 36/195 (18%), Positives = 77/195 (39%), Gaps = 14/195 (7%) Query: 91 AQADLANQTQAVKDVTAKAQANTQAIKDATAENAKIDAENKAEAERVAKENKEGQAAVDA 150 A A+ +A++ + A++ IK AE A ++A + + A Sbjct: 223 LAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAK 282 Query: 151 RNKAGQAAVDARNKAKQQAQDDQKAKIDAENKAESQRVSQLNAQNKAKIDAENKDAQAK- 209 A +A++ + Q ++A ++ + L+A +AK E + + + Sbjct: 283 IKTLEAE--KAALEAEKADLEHQSQVLNANRQSLRR---DLDASREAKKQLEAEHQKLEE 337 Query: 210 ----ANATNAQLQKDYQAKLAEIKSVEAYNAGVRQRNKDAQAKADATNAQLQKDYQAKLA 265 + A+ L++D A K +EA + + + + ++A+ L++D A Sbjct: 338 QNKISEASRQSLRRDLDASREAKKQLEAEHQKL---EEQNKI-SEASRQSLRRDLDASRE 393 Query: 266 LYNQALKAKAEADKQ 280 Q KA EA+ + Sbjct: 394 AKKQVEKALEEANSK 408 Score = 43.1 bits (101), Expect = 5e-06 Identities = 43/232 (18%), Positives = 83/232 (35%), Gaps = 4/232 (1%) Query: 51 TQNQAETVTSTQLDKAVATAKKAAVAVTTTPAVNHATTTDAQADLANQTQAVKDVTAKAQ 110 + A L+KA+ A + A + A +A A +A++ + Sbjct: 148 AEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFST 207 Query: 111 ANTQAIKDATAENAKIDAEN-KAEAERVAKENKEGQAAVDARNKAGQAAVDARNKAKQQA 169 A++ IK AE A + A E N + + + A +A+ + Sbjct: 208 ADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEK 267 Query: 170 QDDQKAKIDAENKAESQRVSQLNAQNKAKIDAENKDAQAKANATNAQLQKDYQAKLAEIK 229 + + A+ + + A +A+ +Q NA L++D A K Sbjct: 268 ALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVL-NANRQSLRRDLDASREAKK 326 Query: 230 SVEAYNAGVRQRNKDAQAKADATNAQLQKDYQAKLALYNQALKAKAEADKQS 281 +EA + + ++NK ++A + L +AK L +A K E + Sbjct: 327 QLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQL--EAEHQKLEEQNKI 376 Score = 41.2 bits (96), Expect = 2e-05 Identities = 43/296 (14%), Positives = 78/296 (26%), Gaps = 23/296 (7%) Query: 4 NTKGHGFFRKSKAYGLVCAIALA--GAFTLATSQVSADQVTTQATTQ-----------TV 50 NT H RK K A+AL GA + + + T T + Sbjct: 5 NTNRHYSLRKLKTGTASVAVALTVLGAGLVVNTNEVSAVATRSQTDTLEKVQERADKFEI 64 Query: 51 TQNQAETVTSTQLDKAVATAKKAAVAVTTTPAVNHATTT--DAQADLANQTQAVKDVTAK 108 N + S A + ++ A++ Q ++ A Sbjct: 65 ENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKAD 124 Query: 109 AQANTQAI----KDATAENAKIDAENKAEAERVAKENKEGQAAVDARNKAGQAAVDARNK 164 + + +A+ ++AE A A R A K + A++ + Sbjct: 125 LEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAE 184 Query: 165 AKQQAQDDQKAKIDAENKAESQRVSQLNAQNKAKIDAENKDAQAKANATNAQLQKDYQAK 224 + + E + A +A A Sbjct: 185 KAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTAD 244 Query: 225 LAEIKSVEAYNAGVRQRNKDAQAKADATNAQLQKDYQAKLALYNQALKAKAEADKQ 280 A+IK++EA A + R + + A A KA + + Sbjct: 245 SAKIKTLEAEKAALEARQAELEKA----LEGAMNFSTADSAKIKTLEAEKAALEAE 296
>adhesinb#Adhesin B signature. Length = 310 Score = 29.0 bits (65), Expect = 0.008 Identities = 11/31 (35%), Positives = 15/31 (48%) Query: 3 MKKWFGLLFLGLALITLAACGQKTPEDIIKT 33 MKK L+ L LA + LAAC + + Sbjct: 1 MKKCRFLVLLLLAFVGLAACSSQKSSTETGS 31
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 51.2 bits (122), Expect = 2e-10 Identities = 14/64 (21%), Positives = 30/64 (46%) Query: 5 RQIQKTKVAIYNAFISLLQENDYSKITVQDVIGLANVGRSTFYSHYESKEVLLKELCEDL 64 ++ Q+T+ I + + L + S ++ ++ A V R Y H++ K L E+ E Sbjct: 7 QEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELS 66 Query: 65 FHHL 68 ++ Sbjct: 67 ESNI 70
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 66.2 bits (161), Expect = 4e-13 Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 11/71 (15%) Query: 1067 TPKPVPDKDKYDPTGKSQQVNGKGN-----------KLPATGESATPFFNVAALTIISSV 1115 TP P G++ Q K N +LP+TGE+A PFF AALT++++ Sbjct: 468 TPDAKPGNKAVPGKGQAPQAGTKPNQNKAPMKETKRQLPSTGETANPFFTAAALTVMATA 527 Query: 1116 GLLSVSKKKED 1126 G+ +V K+KE+ Sbjct: 528 GVAAVVKRKEE 538 Score = 44.7 bits (105), Expect = 2e-06 Identities = 14/55 (25%), Positives = 21/55 (38%) Query: 14 QTKQRFSIKKFKFGAASVLIGLSFLGGVTQGNLNIFEESIVAASTIPGSAATLNT 68 T + +S++K K G ASV + L+ LG N N + T Sbjct: 5 NTNRHYSLRKLKTGTASVAVALTVLGAGLVVNTNEVSAVATRSQTDTLEKVQERA 59
>ADHESNFAMILY#Adhesin family signature. Length = 309 Score = 29.4 bits (66), Expect = 0.003 Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 14/61 (22%) Query: 3 KKLVGFIVLALSTIILVACSNDSLEGE----------YYWINDARNQHMATIKGDKGYVE 52 KKL +VL LS IILVAC++ + I D I GDK + Sbjct: 2 KKLGTLLVLFLSAIILVACASGKKDTTSGQKLKVVATNSIIADITKN----IAGDKIDLH 57 Query: 53 S 53 S Sbjct: 58 S 58
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 28.2 bits (63), Expect = 0.003 Identities = 11/41 (26%), Positives = 22/41 (53%) Query: 6 EFLKDFEEWLQSQISINQMAMDSAKKVLEEDKDERAADAYI 46 L +F+E + +Q I + +D A+++LE+ + A I Sbjct: 65 NVLLEFKELMMAQEFIQKGGIDYARELLEKSLGTQKAVDII 105
>ADHESNFAMILY#Adhesin family signature. Length = 309 Score = 220 bits (563), Expect = 3e-70 Identities = 79/313 (25%), Positives = 149/313 (47%), Gaps = 12/313 (3%) Query: 1 MRKKFLLLMSFVAMFA-AWQLVQVKQVWADSKLKVVTTFYPVYEFTKNVVGDKADVSMLI 59 M+K LL+ F++ K + KLKVV T + + TKN+ GDK D+ ++ Sbjct: 1 MKKLGTLLVLFLSAIILVACASGKKDTTSGQKLKVVATNSIIADITKNIAGDKIDLHSIV 60 Query: 60 KAGTEPHDFEPSTKNIAAIQDSNAFVYMDDNMETWAPKVA-KSVKSKKVTTIKGTGDMLL 118 G +PH++EP +++ +++ Y N+ET K V++ K T K + Sbjct: 61 PIGQDPHEYEPLPEDVKKTSEADLIFYNGINLETGGNAWFTKLVENAKKTENKDY--FAV 118 Query: 119 TKGVEEEGEEHEGHGHEGHHHELDPHVWLSPERAISVVENIRNKFVKAYPKDAASFNKNA 178 + GV+ EG +G DPH WL+ E I +NI + P + + KN Sbjct: 119 SDGVDVI--YLEGQNEKGKE---DPHAWLNLENGIIFAKNIAKQLSAKDPNNKEFYEKNL 173 Query: 179 DAYIAKLKELDKEYKNGLSN--AKQKSFVTQHAAFGYMALDYGLNQVPIAGLTPDAEPSS 236 Y KL +LDKE K+ + A++K VT AF Y + YG+ I + + E + Sbjct: 174 KEYTDKLDKLDKESKDKFNKIPAEKKLIVTSEGAFKYFSKAYGVPSAYIWEINTEEEGTP 233 Query: 237 KRLGELAKYIKKYNINYIYFEENASNKVAKTLADEVGVKTAVLSPLEGLSKKEMAAGEDY 296 +++ L + +++ + ++ E + ++ KT++ + + + ++++ G+ Y Sbjct: 234 EQIKTLVEKLRQTKVPSLFVESSVDDRPMKTVSQDTNIPIYAQIFTDSIAEQG-KEGDSY 292 Query: 297 FSVMRRNLKVLKK 309 +S+M+ NL + + Sbjct: 293 YSMMKYNLDKIAE 305
>PF05272#Virulence-associated E family protein Length = 892 Score = 32.0 bits (72), Expect = 0.002 Identities = 11/20 (55%), Positives = 14/20 (70%) Query: 36 IVGKSGTGKSTLLSLLAGLD 55 + G G GKSTL++ L GLD Sbjct: 601 LEGTGGIGKSTLINTLVGLD 620
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 75.3 bits (185), Expect = 5e-18 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 2/105 (1%) Query: 2 KILTVEDDKLIREGISEYLSEFGYTVIQAKDGREALSKFNSD-INLVILDIQIPFINGLE 60 IL +DD IR +++ LS GY V + + +LV+ D+ +P N + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 61 VLKEIRK-KSNLPILILTAFSDEEYKIDAFTNLVDGYVEKPFSLP 104 +L I+K + +LP+L+++A + I A Y+ KPF L Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLT 109
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.3 bits (65), Expect = 0.018 Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 4/38 (10%) Query: 27 EPG----QVVVLLGPSGSGKSTLIRTMNALESIDDGSL 60 EPG VVL G G GKSTLI T+ L+ D Sbjct: 590 EPGCKFDYSVVLEGTGGIGKSTLINTLVGLDFFSDTHF 627
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 29.5 bits (66), Expect = 0.024 Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 3/37 (8%) Query: 137 IGFDTAVATAVENLDRLRDTSASHNRTFVVEVMGRNA 173 I D V E+ D L + ++E+MGR++ Sbjct: 94 INQDRIVVIDFESTDELGFN---SIYSLIIEIMGRHS 127
>PF05272#Virulence-associated E family protein Length = 892 Score = 35.0 bits (80), Expect = 2e-04 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%) Query: 29 ILSLVGPSGGGKTTLLRMLAGLE-KIDSGTIVHDGKEVSVDHL 70 + L G G GK+TL+ L GL+ D+ + GK+ S + + Sbjct: 598 SVVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTGKD-SYEQI 639
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 34.1 bits (78), Expect = 2e-04 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 9/72 (12%) Query: 139 YGETYAKQMYNDNRANL--LNNNAK-VYLAIKDNQIIGDV---TAWDYGEYVEIDDFYVQ 192 + + Y KQ Y D+ ++ + K +L +N IG + + W+ Y I+D V Sbjct: 42 FSKPYFKQ-YEDDDMDVSYVEEEGKAAFLYYLENNCIGRIKIRSNWN--GYALIEDIAVA 98 Query: 193 ESYRGQGIGTRL 204 + YR +G+GT L Sbjct: 99 KDYRKKGVGTAL 110
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 68.7 bits (168), Expect = 1e-15 Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 3/124 (2%) Query: 4 DQGKIYIVEDDMTIVSLLKGHLS-ASYHVSSVSNFRDVKQEIIAFQPDLILMDITLPYFN 62 I + +DD I ++L LS A Y V SN + + I A DL++ D+ +P N Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 63 GFYWTAELRK-FLTIPIIFISSSNDEMDMVMALNMGGDDFISKPFSL-AVLDAKLTAILR 120 F ++K +P++ +S+ N M + A G D++ KPF L ++ A+ Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 121 RSQQ 124 ++ Sbjct: 122 PKRR 125
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 66.0 bits (161), Expect = 1e-14 Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 9/140 (6%) Query: 2 KVLVVDDEPVARNELIYLLNKYDSNLVIAEAHDMATALAILLRETFDVALLDIHLRDDSG 61 +LV DD+ R L L++ ++ I + AT + D+ + D+ + D++ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITS--NAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 62 LQLAEYINKM-PKPPLLIFATAYDQY--AIQAFEHDARDYLLKPYDFDRLKQAMDRVKGA 118 L I K P P+L+ +A + + AI+A E A DYL KP+D L + + + A Sbjct: 63 FDLLPRIKKARPDLPVLVM-SAQNTFMTAIKASEKGAYDYLPKPFD---LTELIGIIGRA 118 Query: 119 LSTSTIIESVTSGPLFKQQY 138 L+ S Sbjct: 119 LAEPKRRPSKLEDDSQDGMP 138
>PF06580#Sensor histidine kinase Length = 349 Score = 205 bits (522), Expect = 5e-63 Identities = 59/211 (27%), Positives = 110/211 (52%), Gaps = 12/211 (5%) Query: 366 QAEEATRLLQDAEMKSLQAQVNPHFLFNALNTIYGLIRMDSEKARKLVQDFSKVIRANLQ 425 + + Q+A++ +L+AQ+NPHF+FNALN I LI D KAR+++ S+++R +L+ Sbjct: 150 DQWKMASMAQEAQLMALKAQINPHFMFNALNNIRALILEDPTKAREMLTSLSELMRYSLR 209 Query: 426 RAKQNLIPLHDELEQVNAYLALEEARFPNMVAFNLDNQTNSDDNLMIPPFTLQVLIENSY 485 + + L DEL V++YL L +F + + F ++ +PP +Q L+EN Sbjct: 210 YSNARQVSLADELTVVDSYLQLASIQFEDRLQFENQINPAI-MDVQVPPMLVQTLVENGI 268 Query: 486 KHAFKHVNKNNQLKVTIARNNDRLHIIVQDNGIGIPKEKLITLGKKTQISKQGSGTAIEN 545 KH + + ++ + ++N + + V++ G K +K+ +GT ++N Sbjct: 269 KHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKN-----------TKESTGTGLQN 317 Query: 546 LVRRLNIIYDGQASLKFESNDSGTCAIVNIP 576 + RL ++Y +A +K A+V IP Sbjct: 318 VRERLQMLYGTEAQIKLSEKQGKVNAMVLIP 348
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 26.9 bits (59), Expect = 0.021 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%) Query: 71 AIDSGVDALSGAAIGTLVGGPVGTVVGAVQG 101 ++ SG+ A AA +LVG PV +VGAV G Sbjct: 377 SVSSGISA---AATTSLVGAPVSALVGAVTG 404
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 29.6 bits (66), Expect = 0.004 Identities = 19/103 (18%), Positives = 32/103 (31%), Gaps = 1/103 (0%) Query: 36 QATTVTDQTSEKAGENSSAEATSASESVSSEATTVVPEASLPSTDLHAQPADSKTAPTET 95 Q+ TV Q + + ++ A T P S + + Sbjct: 1135 QSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNS 1194 Query: 96 VIEG-QTETNPTTSPDKQFLQQAIPKEKHRLGRKQIQANPKLQ 137 V+E + T TT P PK +HR + + N + Sbjct: 1195 VVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPA 1237
>MYCMG045#Hypothetical mycoplasma lipoprotein (MG045) signature. Length = 483 Score = 27.8 bits (61), Expect = 0.022 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%) Query: 27 KNNDIHFDTKRLESD---SQKNSGFQTELTKDLFKKEDLKKLDKNRQSKVSLQKKQSK 81 K N+ +K++ +D S+K + TE K L +KED +L++N + V KK Sbjct: 389 KKNNAEMKSKQMSTDQMTSEKEFDYYTETLKALLEKEDSAELNENEKKLVETIKKAYT 446
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 28.4 bits (63), Expect = 0.003 Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 1/40 (2%) Query: 29 IKQLEKAQESQDALQKKIKTLKDDIASLEGKRQQEIMAEY 68 Q + + LQ KI+ +++ + + + QE+MA Y Sbjct: 374 KAQYTSMAKMR-MLQPKIQAMRERLGDDKQRISQEMMALY 412
>PF05844#YopD protein Length = 295 Score = 27.3 bits (60), Expect = 0.048 Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 14/80 (17%) Query: 28 GFGQMGNSS-QSKDRPKQTATKKTRTN-TITQTQVKEFLVAYYTKKDLEENRNRYKDYMT 85 F QM N+S Q + Q + ++ N TI Q+Q K+ +E+ + +M Sbjct: 222 SFVQMANASVQVRQGESQASAREEEVNATIGQSQ----------KQKVEDQMSFDAGFMK 271 Query: 86 EGLYNATISEENKAQNQAYR 105 + L I + ++ NQA+R Sbjct: 272 DVL--QLIQQYTQSHNQAWR 289
>cloacin#Cloacin signature. Length = 551 Score = 31.6 bits (71), Expect = 0.016 Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 15/80 (18%) Query: 23 HRHNQSSARKAQKAAKGELQVATKELKEAREAYQKAQTDFRAGIIDDEALKKAQEKLKQA 82 HR Q + KAQ+A Q + A +A K ++D D AL A E K+ Sbjct: 387 HRMWQMAGLKAQRA-----QTDVNNKQAAFDAAAKEKSD------ADAALSSAMESRKKK 435 Query: 83 QAKYKDAK----KVKKKVRK 98 + K + A+ K K RK Sbjct: 436 EDKKRSAENNLNDEKNKPRK 455
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 53.1 bits (127), Expect = 5e-09 Identities = 28/177 (15%), Positives = 61/177 (34%), Gaps = 5/177 (2%) Query: 49 QTVTQNQAETVTSTQLDKAVDTAKKAAVAVTTTTAVNHATTTDAQADLANQTQAVKDVTA 108 QTV T + Q D + +A V + K + Sbjct: 990 QTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESK 1049 Query: 109 KAQANTQAIKDATAENAKIDAENKAEAERVAKANKAGQAEVDARNKAGQAAVDARNKAKQ 168 + N Q + TA+N ++ E K+ + + N+ Q+ + + K Sbjct: 1050 TVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTET-----KETA 1104 Query: 169 QAQDDQKAKIDAENKAESQRVSQLNAQNKAKIDAENKDAQAKADATNAQLQKDYQTK 225 + ++KAK++ E E +V+ + + + + A+ + K+ Q++ Sbjct: 1105 TVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQ 1161 Score = 36.6 bits (84), Expect = 6e-04 Identities = 49/276 (17%), Positives = 86/276 (31%), Gaps = 23/276 (8%) Query: 39 ADQVTTQATTQTVTQNQAETVTSTQLDKAVDTAKKAAVAVTTTTAVNHATTTDAQADLAN 98 D+ ETV ++ T +K T TTA N +A++++ Sbjct: 1020 VDEAPVPPPAPATPSETTETVAENSKQES-KTVEKNEQDATETTAQNREVAKEAKSNVKA 1078 Query: 99 QTQAVKDVTAKAQANTQAIKDATAENAKIDAENKA--EAERVAKANKAG----------- 145 TQ + V + T E A ++ E KA E E+ + K Sbjct: 1079 NTQTNE-VAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSE 1137 Query: 146 ----QAEVDARNKAGQAAVDARNKAKQQAQDDQKAKIDAENKAESQRVSQ-LNAQNKAKI 200 QAE N + +++ A +Q AK + N + S +N N Sbjct: 1138 TVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVE 1197 Query: 201 DAENKDAQAKADATNAQLQKDYQTKLANIKSVEAYN---AGVRQRNKDAQAKADATNAQL 257 + EN N++ + + +N A ++ A D T+ Sbjct: 1198 NPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNT 1257 Query: 258 QKDYQAKLALYNQALKAKAEADKQSINNVAFDIKAQ 293 A +A Q I+ + + + Q Sbjct: 1258 NAVLSDARAKAQFVALNVGKAVSQHISQLEMNNEGQ 1293
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 35.0 bits (80), Expect = 2e-04 Identities = 17/62 (27%), Positives = 20/62 (32%), Gaps = 5/62 (8%) Query: 38 PLITPTPVDPGTP-TDTTKPSTPVDPGTPTDTTKPSTPVDPGTPTDTTKPSTPVDSGTST 96 L D TP + P P TKP+ P T PST G + Sbjct: 457 KLRAGKASDSQTPDAKPGNKAVPGKGQAPQAGTKPNQNKAPMKETKRQLPST----GETA 512 Query: 97 NP 98 NP Sbjct: 513 NP 514
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 47.5 bits (113), Expect = 1e-07 Identities = 25/192 (13%), Positives = 57/192 (29%), Gaps = 1/192 (0%) Query: 443 QSQALASQQVAQKQLNDAQAKATGLNAVTMQTPIAQANLIKAQSNLKDAQKRLAEAQASV 502 A A Q L A+ + T ++ + + +K E Sbjct: 129 ALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLT 188 Query: 503 KLANQDNVKKQADLTKAESKLKDAQKQLAAAQAKLTTSKTKLNQLKQVLAEASQQVAQAN 562 L + Q + E L + + A++ + K L + S + + Sbjct: 189 SLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQA 248 Query: 563 QDYKQAKDNLTQKTAYLTNLRNAQANLIKAQSDVAQAKDNLANKIAKLQREVA-YLQELK 621 + + + LR ++ L + +S++ AK+ + E+ L++ Sbjct: 249 IAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTT 308 Query: 622 TKAVDAQSQYQK 633 + K Sbjct: 309 DNIGLLTLELAK 320 Score = 39.0 bits (91), Expect = 6e-05 Identities = 17/152 (11%), Positives = 62/152 (40%), Gaps = 12/152 (7%) Query: 432 MTKNMANALTKQSQALASQQVAQKQLNDAQAKATGLNAVTMQTPIAQANLIKAQSNLKDA 491 +N++ + +L +Q + Q Q + L+ + A + + ++ + Sbjct: 175 YFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELN-LDKKRAERLTVLARINRYENLSRVE 233 Query: 492 QKRLAEAQASVK---LANQDNVKKQADLTKAESKLKDAQKQLAAAQAKLTTSKTKLNQLK 548 + RL + + + +A ++++ +A ++L+ + QL ++++ ++K + + Sbjct: 234 KSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVT 293 Query: 549 QV--------LAEASQQVAQANQDYKQAKDNL 572 Q+ L + + + + + ++ Sbjct: 294 QLFKNEILDKLRQTTDNIGLLTLELAKNEERQ 325
>ADHESNFAMILY#Adhesin family signature. Length = 309 Score = 28.7 bits (64), Expect = 0.014 Identities = 12/35 (34%), Positives = 18/35 (51%) Query: 4 LKKITVGTIVCLSFLGLTACSSSNTQQTSTSKSNV 38 +KK+ ++ LS + L AC+S TS K V Sbjct: 1 MKKLGTLLVLFLSAIILVACASGKKDTTSGQKLKV 35
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 34.3 bits (78), Expect = 0.002 Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 2/87 (2%) Query: 226 IPKKDLSPSELAAAQAYWSQKQGRGARPSDY-RPTPAPGRRKAPIPDVTPNPGQGHQPD- 283 IP+ DL+P A A + P++ P PG R P PD NP D Sbjct: 310 IPRPDLTPGSAEAPNAQPLPEVSPAENPANNPAPNENPGTRPNPEPDPDLNPDANPDTDG 369 Query: 284 NGGYHPAPPRPNDASQNKHQRDEFKGK 310 G P P D +H+++ +G+ Sbjct: 370 QPGTRPDSPAVPDRPNGRHRKERKEGE 396
>ADHESNFAMILY#Adhesin family signature. Length = 309 Score = 247 bits (631), Expect = 5e-83 Identities = 82/323 (25%), Positives = 143/323 (44%), Gaps = 34/323 (10%) Query: 1 MKKGFFLMAMVVSLVMIAGCDKSANPKQPTQGMSVVTSFYPMYAMTKEVSGDLNDVR-MI 59 MKK L+ + +S +++ C Q + VV + + +TK ++GD D+ ++ Sbjct: 1 MKKLGTLLVLFLSAIILVACASGKKDTTSGQKLKVVATNSIIADITKNIAGDKIDLHSIV 60 Query: 60 QSGAGIHSFEPSVNDVAAIYDADLFVYHSHTLE----AWARDLDPNLKKSKVDVFEASKP 115 G H +EP DV +ADL Y+ LE AW L N KK++ + A Sbjct: 61 PIGQDPHEYEPLPEDVKKTSEADLIFYNGINLETGGNAWFTKLVENAKKTENKDYFA--- 117 Query: 116 LTLDRVKGLEDMEVTQGIDPATLY--------DPHTWTDPVLAGEEAVNIAKELGRLDPK 167 V+ G+D L DPH W + A NIAK+L DP Sbjct: 118 -------------VSDGVDVIYLEGQNEKGKEDPHAWLNLENGIIFAKNIAKQLSAKDPN 164 Query: 168 HKDSYTKKAKAFKKEAEQLTEEYTQKFKKVR--SKTFVTQHTAFSYLAKRFGLKQLGISG 225 +K+ Y K K + + ++L +E KF K+ K VT AF Y +K +G+ I Sbjct: 165 NKEFYEKNLKEYTDKLDKLDKESKDKFNKIPAEKKLIVTSEGAFKYFSKAYGVPSAYIWE 224 Query: 226 ISPEQEPSPRQLKEIQDFVKEYNVKTIFAEDNVNPKIAHAIAKSTGAKVKT---LSPLEA 282 I+ E+E +P Q+K + + +++ V ++F E +V+ + +++ T + + Sbjct: 225 INTEEEGTPEQIKTLVEKLRQTKVPSLFVESSVDDRPMKTVSQDTNIPIYAQIFTDSIAE 284 Query: 283 APSGNKTYLENLRANLEVLYQQL 305 +Y ++ NL+ + + L Sbjct: 285 QGKEGDSYYSMMKYNLDKIAEGL 307
>SUBTILISIN#Subtilisin serine protease family (S8) signature. Length = 326 Score = 107 bits (269), Expect = 2e-27 Identities = 51/226 (22%), Positives = 85/226 (37%), Gaps = 47/226 (20%) Query: 117 KAGKGAGTVVAVIDAGFDKNHEAWRLTDKAKARYQSKEDLEKAKKEHGITYGEWVNDKVA 176 +G G VAV+D G D +H DL KA+ G + + Sbjct: 36 NQTRGRGVKVAVLDTGCDADHP----------------DL-KARIIGGRNFTDDDEGDPE 78 Query: 177 YYHDYSKDGKTAVDQEHGTHVSGILSGNAPSETKEPYRLEGAMPEAQLLLMRVEIVNGLA 236 + DY+ HGTHV+G ++ + G PEA LL+++V G Sbjct: 79 IFKDYNG---------HGTHVAGTIAATENE-----NGVVGVAPEADLLIIKVLNKQGSG 124 Query: 237 DYARNYAQAIRDAINLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGND 296 Y Q I AI +I+MS G E +A A + + ++ +AGN+ Sbjct: 125 QYD-WIIQGIYYAIEQKVDIISMSLGGPED-----VPELHEAVKKAVASQILVMCAAGNE 178 Query: 297 SSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETAT 342 +T +G P + ++V + + D+ +E + Sbjct: 179 GDGDDRT----------DELGYPGCYNEVISVGAINFDRHASEFSN 214 Score = 79.9 bits (197), Expect = 5e-18 Identities = 37/139 (26%), Positives = 58/139 (41%), Gaps = 22/139 (15%) Query: 457 NATPKVLPTASGTK---LSRFSSWGLTADGNIKPDIAAPGQDILSSVANNKYAKLSGTSM 513 +V+ + S FS+ + D+ APG+DILS+V KYA SGTSM Sbjct: 192 GCYNEVISVGAINFDRHASEFSNSNN------EVDLVAPGEDILSTVPGGKYATFSGTSM 245 Query: 514 SAPLVAGIMGL-LQKQYETQYPDMTPSERLDLAKKVLMSSATALYDEDEKAYFSPRQQGA 572 + P VAG + L Q + D+T E L+ L + SP+ +G Sbjct: 246 ATPHVAGALALIKQLANASFERDLTEPE----LYAQLIKRTIPLGN-------SPKMEGN 294 Query: 573 GAVDAKKASA-ATMYVTDK 590 G + + ++ T + Sbjct: 295 GLLYLTAVEELSRIFDTQR 313
>ARGREPRESSOR#Bacterial arginine repressor signature. Length = 149 Score = 29.1 bits (65), Expect = 0.009 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 5/48 (10%) Query: 1 MNKHQRLDELVKLVDRVGTVTVSEIMDNLK-----VSDMTVRRDLTEL 43 MNK QR ++ +++ T E++D LK V+ TV RD+ EL Sbjct: 1 MNKGQRHIKIREIITANEIETQDELVDILKKDGYNVTQATVSRDIKEL 48
>PF07328#T-DNA border endonuclease VirD1 Length = 144 Score = 37.3 bits (86), Expect = 3e-06 Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 13/92 (14%) Query: 26 LSKSKCKTFSEYARKVLLNPNM----------NFLTVDTTTYQDLIFELKRIG---NNVN 72 +++++ F ++ LN N F+ D T + L + I N+N Sbjct: 27 MTEAELAEFDAQIAELGLNRNRALRIAARRIGGFVENDAKTVELLRDMSRAIAGVATNIN 86 Query: 73 QIAHAVNQNHIISHEQFQELRQGMAELVSEVE 104 QIA A N+ H ++ F R+ + +S++ Sbjct: 87 QIAKAANRTHDPAYHSFMAERKVLGLELSKLS 118
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 41.2 bits (96), Expect = 3e-05 Identities = 53/365 (14%), Positives = 111/365 (30%), Gaps = 52/365 (14%) Query: 13 QEKGEKYVFRKSKQYRTLCSVALGTVVMAFVALAGPMVQADEVGRTVATSVQTETNPATN 72 Y RK K SVA+ V+ AG +V +EV S Sbjct: 4 NNTNRHYSLRKLKT--GTASVAVALTVLG----AGLVVNTNEVSAVATRSQTDTLEKVQE 57 Query: 73 LKENQPSPIAEQKDSLAATGQSTGTVTVTVPHDKVTQAVDKAKTEGIKAVQDKPMDLGNT 132 + K + + + + + TE + ++K + Sbjct: 58 RADKFEIENNTLKLKNSDLSFNNKAL----------KDHNDELTEELSNAKEKLRKNDKS 107 Query: 133 VSAAETSQQLKKAEEDATNQTTTISKTVEIYKSDKATYEAEKKWVEKRNEELTAAYDKAE 192 +S ++ + + K +E + A+ K +E L A E Sbjct: 108 LSEKA------SKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLE 161 Query: 193 QTGTGL-NHSVDTTVSELKSQDQNAHVTVNTQTVKSGDGTSVSGYQEYVKSVAAIDKKNK 251 + G N S + + + A + ++ ++ G + + +A K + Sbjct: 162 KALEGAMNFSTADSAKIKTLEAEKAALEARQAELE----KALEGAMNFSTADSAKIKTLE 217 Query: 252 ANLADYRTKKQAADAVVAKNQLIQKENEAGLAKAKAENEAIDRRNKEGQKAVDEANKAG- 310 A A +K + + + A + +AE A++ R E +KA++ A Sbjct: 218 AEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFST 277 Query: 311 ----------------QAAVEQANQEKQKQAANRAFEIATITKRNKEREEVAKKENAAID 354 +A + Q ANR + + + +++ ++ Sbjct: 278 ADSAKIKTLEAEKAALEAEKADLEHQSQVLNANR--------QSLRRDLDASREAKKQLE 329 Query: 355 AYNAK 359 A + K Sbjct: 330 AEHQK 334 Score = 39.7 bits (92), Expect = 9e-05 Identities = 48/266 (18%), Positives = 93/266 (34%), Gaps = 24/266 (9%) Query: 104 HDKVTQAVDKAKTEGIKAVQDKPMDLGNTVSAAETSQQLKKAEEDATNQTTTISKTVEIY 163 + + + A+ D + L + D Sbjct: 185 KAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTAD 244 Query: 164 KSDKATYEAEKKWVEKRNEELTAAYDKAEQTGTGLNHSVDTTVSELKSQDQNAHVTVNTQ 223 + T EAEK +E R EL A + A T + + T +E + + + Sbjct: 245 SAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQS 304 Query: 224 TVKSGDGTSVSGYQEYVKSVAAIDKKNKANLADYRTKKQAADAV-------VAKNQLIQK 276 V + + S+ ++ S A K+ +A + + ++A + ++ +K Sbjct: 305 QVLNANRQSLR--RDLDASREAK-KQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKK 361 Query: 277 ENEAGLAKAKAENEAIDRRNKEGQKAVD---EANKAGQAAVEQANQEKQKQAANRAFEIA 333 + EA K + +N+ + + ++ +D EA K + A+E+AN + +A Sbjct: 362 QLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQVEKALEEANSK-----------LA 410 Query: 334 TITKRNKEREEVAKKENAAIDAYNAK 359 + K NKE EE K AK Sbjct: 411 ALEKLNKELEESKKLTEKEKAELQAK 436
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 43.3 bits (102), Expect = 3e-06 Identities = 51/253 (20%), Positives = 90/253 (35%), Gaps = 31/253 (12%) Query: 419 VIGQNDAVEAVARAIRRNRAGFDDGNRPIGSFLFVGPTGVGKTELAKQLAFDMFGSKDAI 478 ++G++ A++ + R + R + + + G +G GK +A+ L Sbjct: 139 LVGRSAAMQEIYRVLAR----LMQTDLTL---MITGESGTGKELVARALHDYGKRRNGPF 191 Query: 479 VRLDMSEYNDRTAVSKLIGATAGYVGYDDNSNTLTERIRRNPYSIVLLDEIEKADPQVIT 538 V ++M+ S+L G G + T R + + LDEI T Sbjct: 192 VAINMAAIPRDLIESELFGHEKG--AFTGAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQT 249 Query: 539 LLLQVLDDGRLTDGQGNTINFKNTVIIATSNAGFGNEAFTGDSDKDLKIMERISPYFRPE 598 LL+VL G T G T + I+A +N KDLK FR + Sbjct: 250 RLLRVLQQGEYTTVGGRTPIRSDVRIVAATN-------------KDLKQSIN-QGLFRED 295 Query: 599 FLNRFNGV-IEFSHLS--KDDLNEIVDLMLDEVNQTIGKKGIDLVVDENVKSHLIDLGYD 655 R N V + L +D+ ++V + + + G D+ + + Sbjct: 296 LYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEK-EGLDVKRF--DQEALELM--KAHP 350 Query: 656 EAMGVRPLRRVIE 668 VR L ++ Sbjct: 351 WPGNVRELENLVR 363
>SECYTRNLCASE#Preprotein translocase SecY subunit signature. Length = 437 Score = 140 bits (355), Expect = 1e-39 Identities = 85/393 (21%), Positives = 173/393 (44%), Gaps = 40/393 (10%) Query: 6 IFEKNIILRKILITFSLIIIFLLGRYVPIPGVLISAYKG------QDNNFATLYSTVTGG 59 F + +K+L T ++I+++ +G ++PIPGV + + L + +GG Sbjct: 8 AFRTPDLRKKLLFTLAIIVVYRVGTHIPIPGVDYKNVQQCVREASGNQGLFGLVNMFSGG 67 Query: 60 NLSQVGVFSLGIGPMMTTMILLRLFTIG--------KYSSGVSQKVQQFRQNVVMLVIAI 111 L Q+ +F+LGI P +T I+L+L T+ K + K+ Q+ + + +AI Sbjct: 68 ALLQITIFALGIMPYITASIILQLLTVVIPRLEALKKEGQAGTAKITQY-TRYLTVALAI 126 Query: 112 IQGLAIAISF-------------QYHNGFSLTKLLLATMILVTGAYIISWIGNLNAEYGF 158 +QG + + Q S+ + + + G ++ W+G L + G Sbjct: 127 LQGTGLVATARSAPLFGRCSVGGQIVPDQSIFTTITMVICMTAGTCVVMWLGELITDRGI 186 Query: 159 G-GMTILVVVGMLVGQFNNIPLIFEL-FQDGYQLAIILFLLWTLVAMYLMITFERSEYRI 216 G GM+IL+ + + + + I + G + + L+ + L++ E+++ RI Sbjct: 187 GNGMSILMFISIAATFPSALWAIKKQGTLAGGWIEFGTVIAVGLIMVALVVFVEQAQRRI 246 Query: 217 PVM--RTSIHNRLVDDA--YMPIKVNASGGMAFMYVYTLLMFPQYIIILLRSIFPTNPDI 272 PV + I R Y+P+KVN +G + ++ +LL P + N Sbjct: 247 PVQYAKRMIGRRSYGGTSTYIPLKVNQAGVIPVIFASSLLYIPALVA----QFAGGNSGW 302 Query: 273 TSY--NDYFSLSSIQGVVIYMILMLVLSVAFTFVNIDPTKISEAMRESGDFIPNYRPGKE 330 S+ + +V Y +L++ + + ++ +P ++++ M++ G FIP R G+ Sbjct: 303 KSWVEQNLTKGDHPIYIVTYFLLIVFFAFFYVAISFNPEEVADNMKKYGGFIPGIRAGRP 362 Query: 331 TQSYLSKICYLFGTFSGFFMAFLGGVPLLFALG 363 T YLS + ++ + VP + +G Sbjct: 363 TAEYLSYVLNRITWPGSLYLGLIALVPTMALVG 395
>ICENUCLEATIN#Ice nucleation protein signature. Length = 1258 Score = 57.5 bits (138), Expect = 3e-10 Identities = 142/636 (22%), Positives = 259/636 (40%), Gaps = 1/636 (0%) Query: 623 YGHTNISGDSDANAEIKLLSESASTSASTSASTSASMSASTSASTSASMSASTSASTSAS 682 YG T +G+ + +++ + +A ++ +A +S A ++ +A +S Sbjct: 212 YGSTQTAGEESSQMAGYGSTQTGMKGSDLTAGYGSTGTAGDDSSLIAGYGSTQTAGEDSS 271 Query: 683 MSAS-TSASTSASTSTSTSASTSASTSASTSASMSASTSASTSASTSASTSASTSASTSA 741 ++A S T+ S T+ S T+ + S+ ++ S T+ S T+ S T+ Sbjct: 272 LTAGYGSTQTAQKGSDLTAGYGSTGTAGADSSLIAGYGSTQTAGEESTQTAGYGSTQTAQ 331 Query: 742 STSASTSASTSASTSASTSASTSASTSASTSASTSASMSASMSASTSASMSASTSASTSA 801 S T+ S T+ S+ + S T+ S+ + S T+ S T+ S Sbjct: 332 KGSDLTAGYGSTGTAGDDSSLIAGYGSTQTAGEDSSLTAGYGSTQTAQKGSDLTAGYGST 391 Query: 802 STSASTSASTSASTSASMSASTSASTSASTSASMSASTSASTSASTSASTSASTSTSTSA 861 T+ + S+ + S + S T+ S + S T+ S T+ S+ + Sbjct: 392 GTAGADSSLIAGYGSTQTAGEESTQTAGYGSTQTAQKGSDLTAGYGSTGTAGDDSSLIAG 451 Query: 862 STSASTSASTSASMSASTSASTSPSTSASTSASTSASTSASTSASTSASMSASTSASTSA 921 S T+ S+ + S T+ S T+ S ST+ S+ + S T+ S Sbjct: 452 YGSTQTAGEDSSLTAGYGSTQTAQKGSDLTAGYGSTSTAGYESSLIAGYGSTQTAGYGST 511 Query: 922 SMSASTSASTSASTSASTSASMSASTSASTSASTSASMSASTSASTSASTSASTSASTST 981 + S T+ + S + S ST+ + S+ + S T++ S T+ S T+ Sbjct: 512 LTAGYGSTQTAQNESDLITGYGSTSTAGANSSLIAGYGSTQTASYNSVLTAGYGSTQTAR 571 Query: 982 STSASTSASTSASTSASMSASTSASTSASTSASMSASTSASISASTSASMSASTSASTSA 1041 S T+ S T+ S S+ + S T++ S+ T+ S T+ S T+ S Sbjct: 572 EGSDLTAGYGSTGTAGSDSSIIAGYGSTQTASYHSSLTAGYGSTQTAREQSVLTTGYGST 631 Query: 1042 STSASTSASMSASTSASTSASTSASTSASMSASTSASTSASTSASTSASTSASTSASTSA 1101 ST+ + S+ ++ S T+ S T+ S T+ S T+ S ST+ + S+ + Sbjct: 632 STAGADSSLIAGYGSTQTAGYNSILTAGYGSTQTAQEGSDLTAGYGSTSTAGADSSLIAG 691 Query: 1102 STSSSTSASTSASTSASTSASMSASTSASTSASMSASTSASTSASTSASMSASTSSSTSA 1161 S+ T+ S T+ S + S TS S ST+ + S+ + S T+S S+ Sbjct: 692 YGSTQTAGYNSILTAGYGSTQTAQEGSDLTSGYGSTSTAGADSSLIAGYGSTQTASYHSS 751 Query: 1162 SMSASTSASMSASTSASTSASTSASMSASTSSSTSASMSASTSASMSASTSASTSASTSA 1221 + S + S T+ S S + + SS + S T+ S T+ S T+ Sbjct: 752 LTAGYGSTQTAREQSVLTTGYGSTSTAGADSSLIAGYGSTQTAGYHSILTAGYGSTQTAQ 811 Query: 1222 SMSASTSASMSATTSASTSVSTSASTSASTSASTSS 1257 S T+ S +T+ + S + S T+ S Sbjct: 812 ERSDLTTGYGSTSTAGADSSLIAGYGSTQTAGYNSI 847 Score = 55.1 bits (132), Expect = 2e-09 Identities = 145/618 (23%), Positives = 257/618 (41%), Gaps = 2/618 (0%) Query: 642 SESASTSASTSASTSASMSASTSASTSASMSASTSASTSASMSASTSASTSASTSTSTSA 701 S + S+ + S + S + STS + S + ST + ST Sbjct: 454 STQTAGEDSSLTAGYGSTQTAQKGSDLTAGYGSTSTAGYESSLIAGYGSTQTAGYGSTLT 513 Query: 702 STSASTSASTSAS--MSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSAST 759 + ST + + S ++ S ST+ + S+ + S T++ S T+ S T+ Sbjct: 514 AGYGSTQTAQNESDLITGYGSTSTAGANSSLIAGYGSTQTASYNSVLTAGYGSTQTAREG 573 Query: 760 SASTSASTSASTSASTSASMSASMSASTSASMSASTSASTSASTSASTSASTSASTSASM 819 S T+ S T+ S S+ ++ S T++ S+ T+ S T+ S T+ S S Sbjct: 574 SDLTAGYGSTGTAGSDSSIIAGYGSTQTASYHSSLTAGYGSTQTAREQSVLTTGYGSTST 633 Query: 820 SASTSASTSASTSASMSASTSASTSASTSASTSASTSTSTSASTSASTSASTSASMSAST 879 + + S+ + S + S T+ S T+ S T+ S ST+ + S+ ++ Sbjct: 634 AGADSSLIAGYGSTQTAGYNSILTAGYGSTQTAQEGSDLTAGYGSTSTAGADSSLIAGYG 693 Query: 880 SASTSPSTSASTSASTSASTSASTSASTSASMSASTSASTSASMSASTSASTSASTSAST 939 S T+ S T+ S T+ S TS S ST+ + S+ ++ S T++ S+ T Sbjct: 694 STQTAGYNSILTAGYGSTQTAQEGSDLTSGYGSTSTAGADSSLIAGYGSTQTASYHSSLT 753 Query: 940 SASMSASTSASTSASTSASMSASTSASTSASTSASTSASTSTSTSASTSASTSASTSASM 999 + S T+ S T+ S ST+ + S+ + S T+ S T+ S T+ Sbjct: 754 AGYGSTQTAREQSVLTTGYGSTSTAGADSSLIAGYGSTQTAGYHSILTAGYGSTQTAQER 813 Query: 1000 SASTSASTSASTSASMSASTSASISASTSASMSASTSASTSASTSASTSASMSASTSAST 1059 S T+ S ST+ + S+ + S T+ S T+ S T+ S + S ST Sbjct: 814 SDLTTGYGSTSTAGADSSLIAGYGSTQTAGYNSILTAGYGSTQTAQENSDLTTGYGSTST 873 Query: 1060 SASTSASTSASMSASTSASTSASTSASTSASTSASTSASTSASTSSSTSASTSASTSAST 1119 + S+ + S T+ S T+ S T+ S T+ S+ST+ S+ + Sbjct: 874 AGYDSSLIAGYGSTQTAGYNSILTAGYGSTQTAQENSDLTTGYGSTSTAGYESSLIAGYG 933 Query: 1120 SASMSASTSASTSASMSASTSASTSASTSASMSASTSSSTSASMSASTSASMSASTSAST 1179 S ++ S + S+ T+ S+ T+ S S + S+ ++ S + S T Sbjct: 934 STQTASFKSTLMAGYGSSQTAREQSSLTAGYGSTSMAGYDSSLIAGYGSTQTAGYQSTLT 993 Query: 1180 SASTSASMSASTSSSTSASMSASTSASMSASTSASTSASTSASMSASTSASMSATTSAST 1239 + S + +S+ T+ S +T+ + S+ + S+ TS S T+ S S Sbjct: 994 AGYGSTQTAEHSSTLTAGYGSTATAGADSSLIAGYGSSLTSGIRSFLTAGYGSTLISGLR 1053 Query: 1240 SVSTSASTSASTSASTSS 1257 SV T+ S+ S SS Sbjct: 1054 SVLTAGYGSSLISGRRSS 1071 Score = 47.1 bits (111), Expect = 5e-07 Identities = 141/623 (22%), Positives = 256/623 (41%), Gaps = 4/623 (0%) Query: 648 SASTSASTSASMSASTSASTSASMSASTSASTSASMSASTSASTSASTSTSTSASTSAST 707 S T++ S + S T+ S T+ S + S S+ + ST T++ S+ T Sbjct: 550 STQTASYNSVLTAGYGSTQTAREGSDLTAGYGSTGTAGSDSSIIAGYGSTQTASYHSSLT 609 Query: 708 SASTSASMSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSAST 767 + S + S T+ S ST+ + S+ + S T+ S T+ S T+ Sbjct: 610 AGYGSTQTAREQSVLTTGYGSTSTAGADSSLIAGYGSTQTAGYNSILTAGYGSTQTAQEG 669 Query: 768 SASTSASTSASMSASMSASTSASMSASTSASTSASTSASTSASTSASTSASMSASTSAST 827 S T+ S S + + S+ + S T+ S T+ S T+ S S S ST Sbjct: 670 SDLTAGYGSTSTAGADSSLIAGYGSTQTAGYNSILTAGYGSTQTAQEGSDLTSGYGSTST 729 Query: 828 SASTSASMSASTSASTSASTSASTSASTSTSTSASTSASTSASTSASMSASTSASTSPST 887 + + S+ ++ S T++ S+ T+ ST T+ S T+ S S + + S+ + Sbjct: 730 AGADSSLIAGYGSTQTASYHSSLTAGYGSTQTAREQSVLTTGYGSTSTAGADSSLIAGYG 789 Query: 888 SASTSASTSASTSASTSASTSASMSASTSASTSASMSASTSASTSASTSASTSASMSAST 947 S T+ S T+ S T+ S T+ S S + + S+ + S T+ S T Sbjct: 790 STQTAGYHSILTAGYGSTQTAQERSDLTTGYGSTSTAGADSSLIAGYGSTQTAGYNSILT 849 Query: 948 SASTSASTSASMSASTSASTSASTSASTSASTSTSTSASTSASTSASTSASMSASTSAST 1007 + S T+ S T+ S ST+ S+ + S T+ S T+ S T+ Sbjct: 850 AGYGSTQTAQENSDLTTGYGSTSTAGYDSSLIAGYGSTQTAGYNSILTAGYGSTQTAQEN 909 Query: 1008 SASTSASMSASTSASISASTSASMSASTSASTSASTSASTSASMSASTSASTSASTSAST 1067 S T+ S ST+ S+ + S T++ S + S+ + S+ T+ S S Sbjct: 910 SDLTTGYGSTSTAGYESSLIAGYGSTQTASFKSTLMAGYGSSQTAREQSSLTAGYGSTSM 969 Query: 1068 SASMSASTSASTSASTSASTSASTSASTSASTSASTSSSTSASTSASTSASTSASMSAST 1127 + S+ + S T+ S T+ ST + SST T+ S +T+ + S+ Sbjct: 970 AGYDSSLIAGYGSTQTAGYQSTLTAGY--GSTQTAEHSST--LTAGYGSTATAGADSSLI 1025 Query: 1128 SASTSASMSASTSASTSASTSASMSASTSSSTSASMSASTSASMSASTSASTSASTSASM 1187 + S+ S S T+ S +S S T+ S+ S S+ T+ S ++ Sbjct: 1026 AGYGSSLTSGIRSFLTAGYGSTLISGLRSVLTAGYGSSLISGRRSSLTAGYGSNQIASHR 1085 Query: 1188 SASTSSSTSASMSASTSASMSASTSASTSASTSASMSASTSASMSATTSASTSVSTSAST 1247 S+ + S ++ + S ++ S+ T+ S +S + S M+ + + S T Sbjct: 1086 SSLIAGPESTQITGNRSMLIAGKGSSQTAGYRSTLISGADSVQMAGERGKLIAGADSTQT 1145 Query: 1248 SASTSASTSSSSSVTSNSSKEKV 1270 + S + ++S + + K+ Sbjct: 1146 AGDRSKLLAGNNSYLTAGDRSKL 1168
>SECGEXPORT#Protein-export SecG membrane protein signature. Length = 110 Score = 38.0 bits (88), Expect = 3e-07 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 4/79 (5%) Query: 1 MYNLLLTILLVLSVLLIISIFMQPQKNPSSNV-FDSSGSEALFERSKARGFEAFMQRFTG 59 MY LL + L++++ L+ I +Q K F + S LF + G FM R T Sbjct: 1 MYEALLVVFLIVAIGLVGLIMLQQGKGADMGASFGAGASATLF---GSSGSGNFMTRMTA 57 Query: 60 VLVFFWLLIGLVLSILSSH 78 +L + +I LVL ++S+ Sbjct: 58 LLATLFFIISLVLGNINSN 76
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 114 bits (287), Expect = 1e-30 Identities = 75/341 (21%), Positives = 146/341 (42%), Gaps = 9/341 (2%) Query: 15 LVMPFMVLYVEQLGAPSNKVEWYAGLSVSLSALSSALVAPLWGRLADKYGRKPMMVRAGL 74 L+MP + + L SN V + G+ ++L AL AP+ G L+D++GR+P+++ + Sbjct: 23 LIMPVLPGLLRDLV-HSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLA 81 Query: 75 MMTFTMGGLAFIHSVTGLLILRILNGIFAGYVPNSTALIASQAPQEESGYALGTLATGVT 134 +A + L I RI+ GI + A IA +E G ++ Sbjct: 82 GAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADITDGDERARHFGFMSACFG 141 Query: 135 GGMLIGPLLGGLLAEWFGIREVFLLVGTILLISTLMTIFMVKEDFKPISN---EETMPTT 191 GM+ GP+LGGL+ F F + ++ L F++ E K E + Sbjct: 142 FGMVAGPVLGGLMGG-FSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPL 200 Query: 192 EVFKSVKSLQILIGLFVTSMIIQISAQSIAPILTLYIRHLGQTENLMFVSGLIVSGMGFS 251 F+ + + ++ L I+Q+ Q A + ++ + G+ ++ G Sbjct: 201 ASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTI--GISLAAFGIL 258 Query: 252 SILSSPKL-GRIGDRIGNHRLLLLALLYSFLMYVLCSLAQTSLQLGVIRFLYGFGTGALM 310 L+ + G + R+G R L+L ++ Y+L + A I L G G M Sbjct: 259 HSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASG-GIGM 317 Query: 311 PSINSILTKIAPRQGLSRIFSYNQMFSNLGQVLGPFVGSAV 351 P++ ++L++ + ++ ++L ++GP + +A+ Sbjct: 318 PALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAI 358 Score = 52.9 bits (127), Expect = 8e-10 Identities = 41/188 (21%), Positives = 75/188 (39%), Gaps = 8/188 (4%) Query: 197 VKSLQILIGLFVTSMIIQISAQSIAPILTLYIRHLGQTENLMFVSGLIVSGMGFSSILSS 256 +K + LI + T + + I P+L +R L + ++ G++++ + Sbjct: 1 MKPNRPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACA 60 Query: 257 PKLGRIGDRIGNHRLLLLALLYSFLMYVLCSLAQTSLQLGVIRFLYGFGTGALMPSINSI 316 P LG + DR G +LL++L + + Y + + A L + R + G TGA + Sbjct: 61 PVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGI-TGATGAVAGAY 119 Query: 317 LTKIAPRQGLSRIFSYNQMFSNLGQVLGPFVG---SAVSIHLGFRWVFFVTSFIVLANFV 373 + I +R F + G V GP +G S H FF + + NF+ Sbjct: 120 IADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAP----FFAAAALNGLNFL 175 Query: 374 WCFINFRK 381 + Sbjct: 176 TGCFLLPE 183
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 29.8 bits (67), Expect = 0.032 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%) Query: 132 HMQPDMVNAMVYPVILLVVSFLVSISFGIVMVVSLVLGVF 171 M+ + AM+YP +L VV+ V + +VV V+ F Sbjct: 164 QMRSRIQQAMIYPCVLTVVAIAVVS-ILLSVVVPKVVEQF 202
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 624 bits (1610), Expect = 0.0 Identities = 180/671 (26%), Positives = 301/671 (44%), Gaps = 65/671 (9%) Query: 9 KTRNIGIMAHVDAGKTTTTERILYYTGKIHKIGETHEGASQMDWMEQEQERGITITSAAT 68 K NIG++AHVDAGKTT TE +LY +G I ++G +G ++ D E++RGITI + T Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 69 TAQWDGHRVNIIDTPGHVDFTIEVQRSLRVLDGAVTVLDAQSGVEPQTETVWRQATEYGV 128 + QW+ +VNIIDTPGH+DF EV RSL VLDGA+ ++ A+ GV+ QT ++ + G+ Sbjct: 62 SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGI 121 Query: 129 PRIVFANKMDKIGADFLYSVQSLHDRLQANAHPIQLPIGSEDDFRGIIDLIKMKAEIYTN 188 P I F NK+D+ G D Q + ++L A +IK K E+Y N Sbjct: 122 PTIFFINKIDQNGIDLSTVYQDIKEKLSAEI------------------VIKQKVELYPN 163 Query: 189 DLGTDILEEDIPAEYVDQANEYREKLVEAVADTDEDLMMKYLEGEEITNEELMAAIRRAT 248 T+ E + + V + ++DL+ KY+ G+ + EL Sbjct: 164 MCVTNFTESE---------------QWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRF 208 Query: 249 INVEFYPVLCGSAFKNKGVQLMLDAVIDYLPSPLDIPAIKGINPDTDEEETRPASDEEPF 308 N +PV GSA N G+ +++ + + S + Sbjct: 209 HNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSSTH-------------------RGQSEL 249 Query: 309 AALAFKIMTDPFVGRLTFFRVYSGVLNSGSYVLNTSKGKRERIGRILQMHANSRQEIETV 368 FKI RL + R+YSGVL+ V + K K +I + +I+ Sbjct: 250 CGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEK-IKITEMYTSINGELCKIDKA 308 Query: 369 YAGDIAAAVG----LKDTTTGDSLTDEKSKVILESIEVPEPVIQLMVEPKSKADQDKMGI 424 Y+G+I L GD+ + E IE P P++Q VEP ++ + Sbjct: 309 YSGEIVILQNEFLKLNS-VLGDTKLLPQR----ERIENPLPLLQTTVEPSKPQQREMLLD 363 Query: 425 ALQKLAEEDPTFRVETNVETGETVISGMGELHLDVLVDRMKREFKVEANVGAPQVSYRET 484 AL ++++ DP R + T E ++S +G++ ++V ++ ++ VE + P V Y E Sbjct: 364 ALLEISDSDPLLRYYVDSATHEIILSFLGKVQMEVTCALLQEKYHVEIEIKEPTVIYME- 422 Query: 485 FRASTQARGFFKRQSGGKGQFGDVWIEFTPNEEGKGFEFENAIVGGVVPREFIPAVEKGL 544 R +A + + + + +P G G ++E+++ G + + F AV +G+ Sbjct: 423 -RPLKKAEYTIHIEVPPNPFWASIGLSVSPLPLGSGMQYESSVSLGYLNQSFQNAVMEGI 481 Query: 545 VESMANGVLAGYPMVDVKAKLYDGSYHDVDSSETAFKIAASLALKEAAKSAQPAILEPMM 604 G L G+ + D K G Y+ S+ F++ A + L++ K A +LEP + Sbjct: 482 RYGCEQG-LYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQVLKKAGTELLEPYL 540 Query: 605 LVTITAPEDNLGDVMGHVTARRGRVDGMEARGNTQVVRAFVPLAEMFGYATVLRSATQGR 664 I AP++ L + + + N ++ +P + Y + L T GR Sbjct: 541 SFKIYAPQEYLSRAYTDAPKYCANIVDTQLKNNEVILSGEIPARCIQEYRSDLTFFTNGR 600 Query: 665 GTFMMVFDHYE 675 + Y Sbjct: 601 SVCLTELKGYH 611
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 28.3 bits (63), Expect = 0.043 Identities = 25/112 (22%), Positives = 46/112 (41%), Gaps = 6/112 (5%) Query: 168 PLDNAKAYQAKVSSGKVVIAGSSSVTPVMEKIKEAYHKVNAKVDVEIQQSDSSTGITSAI 227 P N ++Y K + K + + +E + + + V I +D+ I Sbjct: 379 PSQNVQSYYKKYNKLKKSEEA---ANEQLLQNEEELNYLYS-VLTNINNADNYDEIEEIK 434 Query: 228 DGSADIG-MASRELDKTESSKGVKA-TVIATDGIAVVVNKKNKVNDLSTKQV 277 + G + +++ K++ SK K I+ DGI + V K N ND T + Sbjct: 435 KELIETGYIKFKKIYKSKKSKTSKPMHFISKDGIDIYVGKNNIQNDYLTLKF 486
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 41.9 bits (98), Expect = 2e-07 Identities = 24/121 (19%), Positives = 50/121 (41%), Gaps = 9/121 (7%) Query: 18 QNTGWT---ALTSPVYDRKWTESDLEKNLAN--GMSFFVAEVDDKIAGVLDFGPYYPFPA 72 +N WT S Y +++ + D++ + G + F+ +++ G + + Sbjct: 31 ENGVWTYTEERFSKPYFKQYEDDDMDVSYVEEEGKAAFLYYLENNCIGRIKIRSNW---- 86 Query: 73 GKHVATFGILIAEPYQGQGLGKALLKALLTEAKAQGYIKIAMHVMGNNSRAISLYQKYGF 132 + I +A+ Y+ +G+G ALL + AK + + + N A Y K+ F Sbjct: 87 NGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHF 146 Query: 133 T 133 Sbjct: 147 I 147
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 31.0 bits (70), Expect = 0.009 Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 9/83 (10%) Query: 49 GIGKTSIASAIAGTTKYAFRTFNATVDSKKRLQEIAEEAKFSGGLVLLLDEIHRLDKTKQ 108 I + I S + G K AF A S R ++ + G L LDEI + Q Sbjct: 198 AIPRDLIESELFGHEKGAFTG--AQTRSTGRFEQ-------AEGGTLFLDEIGDMPMDAQ 248 Query: 109 DFLLPLLENGNIIMIGATTENPF 131 LL +L+ G +G T Sbjct: 249 TRLLRVLQQGEYTTVGGRTPIRS 271
>ARGREPRESSOR#Bacterial arginine repressor signature. Length = 149 Score = 29.8 bits (67), Expect = 0.006 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 5/54 (9%) Query: 1 MVKSSRLIDIWLYINNHKKFTTTELATK-----FNVSTRTIQRDIDELSLLGVP 49 M K R I I I ++ T EL +NV+ T+ RDI EL L+ VP Sbjct: 1 MNKGQRHIKIREIITANEIETQDELVDILKKDGYNVTQATVSRDIKELHLVKVP 54
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 26.0 bits (57), Expect = 0.024 Identities = 11/40 (27%), Positives = 21/40 (52%) Query: 57 ELSPKITQFAQLLEDINQQLLKVADVVEQIDSDIASQINQ 96 ++ P+I + +L +I Q++ VAD SD+ + N Sbjct: 489 KVKPQINEGDSVLLEIEQEVSSVADAASSTSSDLGATFNT 528
>LUXSPROTEIN#Bacterial autoinducer-2 (AI-2) production protein LuxS signature. Length = 171 Score = 157 bits (398), Expect = 6e-52 Identities = 56/151 (37%), Positives = 83/151 (54%), Gaps = 4/151 (2%) Query: 7 VESFELDHTIVKAPYVRLISEEVGPVGDIITNFDIRLIQPNENAIDTAGLHTIEHLLAKL 66 ++SF +DHT + AP VR+ P GD IT FD+R PN++ + G+HT+EHL A Sbjct: 3 LDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGF 62 Query: 67 IRQRING----LIDCSPFGCRTGFHMIMWGKQDATEIAKVIKSSLEAIAGGVTWEDVPGT 122 +R +NG +ID SP GCRTGF+M + G ++A +++E + +P Sbjct: 63 MRNHLNGDSVEIIDISPMGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVENQNKIPEL 122 Query: 123 TIESCGNYKDHSLHSAQEWAKLILSQGISDN 153 CG HSL A++ AK IL G++ N Sbjct: 123 NEYQCGTAAMHSLDEAKQIAKNILEVGVAVN 153
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 35.1 bits (80), Expect = 7e-04 Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 6/153 (3%) Query: 30 KEAAELTLLNAEQDAVDLRGKAEIEAEHIRKAAERESKAHQKELLLEAKEEARKYREEIE 89 KEA L+ + L+ K I K E + KA +KE EAKE+A+K +++ Sbjct: 110 KEAVNFALMTRDYQEF-LKTKKLIVDAPDPKELEEQKKALEKEK--EAKEQAQKAQKDKR 166 Query: 90 KEFKSDRQELKQMEARLTDRASSLDRKDENLSNKEKMLDSKEQSLTDKSRHINEREQEIA 149 ++ K +R + + LT+ S+ N + E + +E L R + +EQ A Sbjct: 167 EKRKEERAKNRANLENLTNAMSNPQNLSNNKNLSELIKQQRENELDQMERLEDMQEQAQA 226 Query: 150 TLETKKVEELSR--IAELSQEEAKDIILADTEK 180 K++EEL++ E ++ AKD I T+K Sbjct: 227 N-ALKQIEELNKKQAEEAVRQRAKDKISIKTDK 258
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.0 bits (67), Expect = 0.015 Identities = 13/32 (40%), Positives = 17/32 (53%) Query: 33 CVALIGPNGAGKTTLMSTLLGDISISSGSLTI 64 V L G G GK+TL++TL+G S I Sbjct: 598 SVVLEGTGGIGKSTLINTLVGLDFFSDTHFDI 629
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 66.0 bits (161), Expect = 4e-15 Identities = 24/119 (20%), Positives = 50/119 (42%), Gaps = 5/119 (4%) Query: 2 KLLVAEDQSMLRDAMCQLL-LMEESVSTIDQAGNGGEAIAILSNKAIDVAILDVEMPILS 60 +LVA+D + +R + Q L V N ++ D+ + DV MP + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRI---TSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 61 GLDVLEWVRK-YQNVKVIIVTTFKRSGYFQRAIRSNVDAYVLKDRSVADLMKTIQKVLS 118 D+L ++K ++ V++++ +A Y+ K + +L+ I + L+ Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.8 bits (69), Expect = 8e-04 Identities = 18/76 (23%), Positives = 24/76 (31%), Gaps = 3/76 (3%) Query: 24 QAKRAHELEAGEKATQDFKSVKSTLRALEEIESGNVVIHPDPSAKRASVRARIEAERLAK 83 Q + D SV S EEI + P P+ S AE + Sbjct: 990 QTVDTTNITTPNNIQADVPSVPSNN---EEIARVDEAPVPPPAPATPSETTETVAENSKQ 1046 Query: 84 EEEERKIKEQIAKEKE 99 E + + EQ A E Sbjct: 1047 ESKTVEKNEQDATETT 1062
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 153 bits (387), Expect = 5e-45 Identities = 67/207 (32%), Positives = 104/207 (50%), Gaps = 9/207 (4%) Query: 37 IVYAFAKSIQWL-SFNHSIGLGIILFTLIIRAIMMPLYNMQMKSSQKMQEIQPRLKELQK 95 I K ++W+ SF + G II+ T I+R IM PL Q S KM+ +QP+++ +++ Sbjct: 336 ISQPLFKLLKWIHSFVGNWGFSIIIITFIVRGIMYPLTKAQYTSMAKMRMLQPKIQAMRE 395 Query: 96 KYPGKDPDSRLKLNDEMQSMYKAEGVNPYASVLPLLIQLPVLWALFQALTRVSFLKVGTF 155 + + +++ EM ++YKAE VNP PLLIQ+P+ AL+ L L+ F Sbjct: 396 RLGDD----KQRISQEMMALYKAEKVNPLGGCFPLLIQMPIFLALYYMLMGSVELRQAPF 451 Query: 156 LS--LELSQPDPYYILPVLAALFTFLSTWLTNKAAVEKNIALTLMTYVMPFIILVTSFNF 213 +LS DPYYILP+L + F ++ + + MP I V F Sbjct: 452 ALWIHDLSAQDPYYILPILMGVTMFFIQKMSPTTVTDPMQQ--KIMTFMPVIFTVFFLWF 509 Query: 214 ASGVVLYWTVSNAFQVFQILLLNNPYK 240 SG+VLY+ VSN + Q L+ + Sbjct: 510 PSGLVLYYIVSNLVTIIQQQLIYRGLE 536
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 28.2 bits (62), Expect = 0.042 Identities = 31/170 (18%), Positives = 67/170 (39%), Gaps = 25/170 (14%) Query: 77 VDVVEEYIEEVDETL---EKEDVSQPELPKIDDKNVVT---TSEAIEKI----DLLPNIE 126 V+ + E+ E D +++ ++ E K N+V T+E ++KI DLL I Sbjct: 31 VNAMNEHYTESDIKRNHKTEKNKTEKEKFKDSINNLVKTEFTNETLDKIQQTQDLLKKIP 90 Query: 127 VAAAQVTKYVENIIYEMDLDATIETTTSKRQISLQIETPEAGRIIGYHGKVLKSLQLLAQ 186 ++ + IY D+D LQ + E + G+ + A Sbjct: 91 KDVLEIYSELGGEIYFTDIDLV-------EHKELQDLSEEEKNSMNSRGEKV----PFAS 139 Query: 187 NYLHDRFSKSFSVSINVHDYVEHRTETL---IDFSKKIARRVL-ETNEPY 232 ++ ++ ++ + IN+ DY + ++ + K I+ ++ + Sbjct: 140 RFVFEKKRETPKLIINIKDYAINSEQSKEVYYEIGKGISLDIISKDKSLD 189
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 27.6 bits (61), Expect = 0.015 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 5/67 (7%) Query: 73 VIVNPDFRKKGLGNQLVEYAIKFSEANYPNKPIYAQAQ---AYLQDFYQSFGFQPVS-DI 128 + V D+RKKG+G L+ AI++++ N + + Q FY F + D Sbjct: 95 IAVAKDYRKKGVGTALLHKAIEWAKEN-HFCGLMLETQDINISACHFYAKHHFIIGAVDT 153 Query: 129 YLEDNIP 135 L N P Sbjct: 154 MLYSNFP 160
>SUBTILISIN#Subtilisin serine protease family (S8) signature. Length = 326 Score = 98.0 bits (244), Expect = 4e-24 Identities = 53/228 (23%), Positives = 83/228 (36%), Gaps = 64/228 (28%) Query: 170 RGKGNVVAIIDTGFDINHDIFRLDSPKDDKHSFKTKAEFEELKAKHNITYGKWVNDKIVF 229 RG+G VA++DTG D +H +I+ Sbjct: 39 RGRGVKVAVLDTGCDADHPDL---------------------------------KARIIG 65 Query: 230 AHNYANNTETVADIAAAMKDGYGSEAKNISHGTHVAGIFVGNSKRPAINGLLLEGAAPNA 289 N+ ++ E +I KD G HGTHVAG N + G AP A Sbjct: 66 GRNFTDDDEGDPEIF---KDYNG-------HGTHVAGTIAATE-----NENGVVGVAPEA 110 Query: 290 QVLLMRIPDKIDSDKFGEAYAKAITDAVNLGAKTINMSLGKTADSLIALNDKVKLALKLA 349 +L++++ +K S + + I A+ I+MSLG D ++ A+K A Sbjct: 111 DLLIIKVLNKQGSG-QYDWIIQGIYYAIEQKVDIISMSLGGPEDV-----PELHEAVKKA 164 Query: 350 SEKGVAVVVAAGNEGAFGMDYSKPLSTNPDYGTVNSPAISEDTLSVAS 397 + V+ AAGNEG + P + +SV + Sbjct: 165 VASQILVMCAAGNEGDGDDRTD----------ELGYPGCYNEVISVGA 202 Score = 62.2 bits (151), Expect = 4e-12 Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 14/99 (14%) Query: 553 PDVTASGFEIYSSTYNNQYQTMSGTSMASPHVAGLMTMLQSHLAEKYKGMNLDSKKLLEL 612 D+ A G +I S+ +Y T SGTSMA+PHVAG + +++ + L E Sbjct: 219 VDLVAPGEDILSTVPGGKYATFSGTSMATPHVAGALALIKQ------LANASFERDLTEP 272 Query: 613 S-KNILMSSATALYSEEDKAFYSPRQQGAGVVDAEKAIQ 650 L+ L SP+ +G G++ + Sbjct: 273 ELYAQLIKRTIPL-------GNSPKMEGNGLLYLTAVEE 304
>PF05860#haemagglutination activity domain. Length = 117 Score = 29.8 bits (67), Expect = 0.006 Identities = 21/82 (25%), Positives = 30/82 (36%), Gaps = 24/82 (29%) Query: 115 FASWSDF---------F----SIQNAYFSVTSNSRLFIQGDFSFTGNLNLVL-------- 153 F S+ +F F +IQN VT S I G NL L Sbjct: 35 FHSFQEFSVPTSGTAFFNNPTNIQNIISRVTGGSVSNIDGLIRANATANLFLINPNGIIF 94 Query: 154 ---SLLLLGGTLVVTQKNSVKY 172 + L +GG+ V + N +K+ Sbjct: 95 GQNARLDIGGSFVGSTANRLKF 116
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 29.8 bits (67), Expect = 0.002 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 5/67 (7%) Query: 66 IGSGDFLYLATIGLSLPLHQMFFIIQIGAWLGIIYCLVMRK-----MKKTIAFLPFLSIA 120 +G GDF LA +G L + ++ + + +G + + K I F P+L+IA Sbjct: 211 MGYGDFKLLAALGAWLGWQALPIVLLLSSLVGAFMGIGLILLRNHHQSKPIPFGPYLAIA 270 Query: 121 YIIVTSY 127 I + Sbjct: 271 GWIALLW 277
>PF03309#Bvg accessory factor Length = 271 Score = 28.6 bits (64), Expect = 0.033 Identities = 36/165 (21%), Positives = 53/165 (32%), Gaps = 29/165 (17%) Query: 5 LLGIDLGGTTIKFGILTLEGEVQE---KWAIETNTLENGRHIVSDIVESLKHRLSLYGLT 61 LL ID+ T G+++ G+ + +W I T + +D + L G Sbjct: 2 LLAIDVRNTHTVVGLISGSGDHAKVVQQWRIRTE-----PEVTADELALTID--GLIGDD 54 Query: 62 KDDFLGIGMGSPGAVDRTSKTVTGAFNLNWADTQEVGSVIEKEVGIPFFIDNDANVAALG 121 + G S V V W + V GIP +DN V A Sbjct: 55 AERLTGASGLS--TVPSVLHEVRVMLEQYWPNVPHVLIEPGVRTGIPLLVDNPKEVGA-- 110 Query: 122 ERWVGAGAN----NPDVVFVTLGTGVG-----------GGVIADG 151 +R V A + V G+ + GG IA G Sbjct: 111 DRIVNCLAAYHKYGTAAIVVDFGSSICVDVVSAKGEFLGGAIAPG 155
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 185 bits (470), Expect = 8e-53 Identities = 101/465 (21%), Positives = 196/465 (42%), Gaps = 73/465 (15%) Query: 8 IRNVAIIAHVDHGKTTLVDELLKQSHTLDERKELEE--RAMDSNDIEKERGITILAKNTA 65 I N+ ++AHVD GKTTL + LL S + E +++ D+ +E++RGITI T+ Sbjct: 3 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITS 62 Query: 66 VAYNDVRINIMDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLI 125 + + ++NI+DTPGH DF EV R + ++DG +L++ A +G QTR + + + Sbjct: 63 FQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIP 122 Query: 126 PIVVVNKIDKPSARPSEVVDEVLELF---------IELGADDDQLDFP--VVYASAING- 173 I +NKID+ S V ++ E +EL + +F + + I G Sbjct: 123 TIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEGN 182 Query: 174 ----TSSMSDDPLDQEK------------TMAPIF--------------DTIIDHIPAPV 203 MS L+ + ++ P++ + I + + Sbjct: 183 DDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSST 242 Query: 204 DNSEEPLQFQVSLLDYNDFVGRIGIGRVFRGTVKVGDQVTLSKLDGTTKNFRVTKLFGFF 263 + L +V ++Y++ R+ R++ G + + D V +S + ++T+++ Sbjct: 243 HRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRIS----EKEKIKITEMYTSI 298 Query: 264 GLERKEIQEAKAGDLIAVSGMEDIFVGETVTPTDDIEPLPVLRIDEPTLQMTFLVNNSPF 323 E +I +A +G+++ + E + + + T + + P LQ T Sbjct: 299 NGELCKIDKAYSGEIVILQN-EFLKLNSVLGDTKLLPQRERIENPLPLLQTT-------- 349 Query: 324 AGREGKWITSRKVEER--LLAELQT----DVSLRVDPTDSPDKWTVSGRGELHLSILIET 377 + K ++R LL L D LR + + +S G++ + + Sbjct: 350 -------VEPSKPQQREMLLDALLEISDSDPLLRYYVDSATHEIILSFLGKVQMEVTCAL 402 Query: 378 MRRE-GYELQVSRPEVIIKEIDGVQCEPFERVQIDTPEEYQGAII 421 ++ + E+++ P VI E + E + I+ P A I Sbjct: 403 LQEKYHVEIEIKEPTVIYMERPLKKAE--YTIHIEVPPNPFWASI 445 Score = 42.5 bits (100), Expect = 4e-06 Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 1/79 (1%) Query: 403 EPFERVQIDTPEEYQGAIIQSLSERKGDMLDMQMVGNGQTRLIFLIPARGLIGYSTEFLS 462 EP+ +I P+EY + +++D Q + N + L IPAR + Y ++ Sbjct: 537 EPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCIQEYRSDLTF 595 Query: 463 MTRGYGIMNHTFDQYLPVV 481 T G + Y Sbjct: 596 FTNGRSVCLTELKGYHVTT 614
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 28.2 bits (63), Expect = 0.033 Identities = 6/27 (22%), Positives = 13/27 (48%), Gaps = 1/27 (3%) Query: 102 QSGARL-VYAVDVGTNQLVWKLRQDHR 127 Q R+ + +D+ + + + R D R Sbjct: 35 QLSGRVGMIEMDLASGRTLTAWRADER 61
>ARGREPRESSOR#Bacterial arginine repressor signature. Length = 149 Score = 85.7 bits (212), Expect = 4e-24 Identities = 41/153 (26%), Positives = 80/153 (52%), Gaps = 4/153 (2%) Query: 1 MKKSERLNLIKQIVLNHAVETQHELLRRLEAYGVTLTQATISRDMNEIGIIKVPSAKGRY 60 M K +R I++I+ + +ETQ EL+ L+ G +TQAT+SRD+ E+ ++KVP+ G Y Sbjct: 1 MNKGQRHIKIREIITANEIETQDELVDILKKDGYNVTQATVSRDIKELHLVKVPTNNGSY 60 Query: 61 IYGLSNENDPIFTTAVAKPIKTSILSISDKLLGLEQFININVIPGNSQLIKTFIMSHCQE 120 Y L + + + + + + + I I + +PGN+Q I + + E Sbjct: 61 KYSLPADQRFNPLSKLKRSLMDAFVKIDSA----SHLIVLKTMPGNAQAIGALMDNLDWE 116 Query: 121 HIFSLTADDNSLLLIAKSEADADHIRQSMIAML 153 I D+++L+I ++ D +++ ++ +L Sbjct: 117 EIMGTICGDDTILIICRTHDDTKVVQKKILELL 149
>BONTOXILYSIN#Bontoxilysin signature. Length = 1196 Score = 30.3 bits (68), Expect = 0.011 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 15/65 (23%) Query: 207 KTFSKWL----DNFV-ESAQTR---KIAEIG--ISYCGKA----DMANNFKEKLAVLGAP 252 K + WL N+ + T+ + I + + GKA + +N+F E+ GA Sbjct: 556 KKYYLWLKEVFKNYSFDINLTQEIDSMCGINEVVLWFGKALNILNTSNSFVEEYQDSGA- 614 Query: 253 ISVLE 257 IS++ Sbjct: 615 ISLIS 619
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 125 bits (315), Expect = 2e-41 Identities = 84/91 (92%), Positives = 88/91 (96%) Query: 1 MANKQDLIAKVAEATELTKKDSAAAVDAVFAAVADYLAEGEKVQLIGFGNFEVRERAARK 60 MANKQDLIAKVAEATELTKKDSAAAVDAVF+AV+ YLA+GEKVQLIGFGNFEVRERAARK Sbjct: 1 MANKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARK 60 Query: 61 GRNPQTGAEIEIAASKVPAFKAGKALKDAVK 91 GRNPQTG EI+I ASKVPAFKAGKALKDAVK Sbjct: 61 GRNPQTGEEIKIKASKVPAFKAGKALKDAVK 91
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 119 bits (300), Expect = 2e-32 Identities = 61/226 (26%), Positives = 105/226 (46%), Gaps = 22/226 (9%) Query: 34 YGVIWNTLGVPMANLITYFAQHQGLGFGVAIIIVTIIVRVIILPLGLYQSWKASYQA-EK 92 YG +W + P+ L+ + G +G +III+T IVR I+ PL KA Y + K Sbjct: 330 YGWLW-FISQPLFKLLKWIHSFVG-NWGFSIIIITFIVRGIMYPLT-----KAQYTSMAK 382 Query: 93 MAYFKPLFEPINERLRNAKTQEEKLAAQTELMTAQRENGLSMFGGIGCLPLLIQMPFFSA 152 M +P + + ERL + +K E+M + ++ GG C PLLIQMP F A Sbjct: 383 MRMLQPKIQAMRERLGD-----DKQRISQEMMALYKAEKVNPLGG--CFPLLIQMPIFLA 435 Query: 153 IFFAARYTPGVSSATFLG----LNLGQKSLTLTVIIAILYFVQSWLSMQGVPDEQRQQMK 208 +++ + + A F L+ L +++ + F +S V D +Q++ Sbjct: 436 LYYMLMGSVELRQAPFALWIHDLSAQDPYYILPILMGVTMFFIQKMSPTTVTDPMQQKI- 494 Query: 209 TMMYVMPIAMVFMSISLPASVALYWFIGGIFSIIQQLVTTYVLKPK 254 M MP+ + P+ + LY+ + + +IIQQ + L+ + Sbjct: 495 --MTFMPVIFTVFFLWFPSGLVLYYIVSNLVTIIQQQLIYRGLEKR 538
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 31.3 bits (71), Expect = 0.002 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 5/46 (10%) Query: 110 EIIRAALLAVDHGQWEAARALGLKTPTIYR-----GIIIPQATRIA 150 +I AAL A Q +AA LGL T+ + G+ + +++R A Sbjct: 439 PLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGVSVYRSSRSA 484
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 46.6 bits (110), Expect = 3e-07 Identities = 36/214 (16%), Positives = 72/214 (33%), Gaps = 22/214 (10%) Query: 19 EQILAELEEANRLRKLREEELYQKEQEAKEAARRTAQLMADYEAQRLKDE-QEARAKALE 77 E E + + + E Q + AKEA E + E +E + + Sbjct: 1042 ENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETK 1101 Query: 78 TKQRLEEQEKARIEAKLLAEAAREEERRQAEQALASQEEQVINQGMEPSRELDSGSKSSE 137 +E++EKA++E E +E + ++ + ++ + + EP+RE D E Sbjct: 1102 ETATVEKEEKAKVE----TEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKE 1157 Query: 138 FRTTENVPDIDLKADKTDVATAVPNQETEEIFLVRATDIPTEGENVKLGETSELEPVAKE 197 ++ N AD A + + + N + P + Sbjct: 1158 PQSQTNTT-----ADTEQPAKETSSNVEQPV----TESTTVNTGNSVVENPENTTPATTQ 1208 Query: 198 PIRVEDLSKEEEDIALSAKNKHNKRERRQKADNV 231 P + S + ++ ++R R NV Sbjct: 1209 PTVNSESSNKPKN--------RHRRSVRSVPHNV 1234 Score = 29.6 bits (66), Expect = 0.050 Identities = 42/220 (19%), Positives = 77/220 (35%), Gaps = 37/220 (16%) Query: 36 EEELYQKEQEAKEAARRTAQL------MADYEAQRLKDEQEAR---------AKALETKQ 80 +LY E E + T + AD + +E+ AR A A ++ Sbjct: 977 RYDLYNPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSET 1036 Query: 81 RLEEQEKARIEAKLLAEA---AREEERRQAEQALASQEEQVINQGMEPSRELDSGSKSSE 137 E ++ E+K + + A E + E A ++ N + S +K ++ Sbjct: 1037 TETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQ 1096 Query: 138 FRTTENVPDIDLKADKTDVATAVPNQETEEIFLVRATDIPTEGENVKLGETSELEPVAKE 197 T+ ++ K +K V T +T+E+ V + P + E SE E Sbjct: 1097 TTETKETATVE-KEEKAKVETE----KTQEVPKVTSQVSPKQ-------EQSETVQPQAE 1144 Query: 198 PIRVEDLSKEEEDIALSAKNKHNKRERRQKADNVAKRIAR 237 P R E D ++ K ++ + AK + Sbjct: 1145 PAR-------ENDPTVNIKEPQSQTNTTADTEQPAKETSS 1177
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 32.2 bits (73), Expect = 5e-04 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 8/88 (9%) Query: 58 EGPVIKGRYLTDDLFHKVSEIPVREG--GFIGITSLSIHPDFKGQGIGTALLAAMKDLVV 115 EG YL ++ + I +R G+ I +++ D++ +G+GTALL + Sbjct: 63 EGKAAFLYYLENNC---IGRIKIRSNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAK 119 Query: 116 SQERDGISLTCHDDLIS---FYEMNGFK 140 G+ L D IS FY + F Sbjct: 120 ENHFCGLMLETQDINISACHFYAKHHFI 147
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 77.6 bits (191), Expect = 9e-19 Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 2/103 (1%) Query: 3 VLIIEDDPMVEFIHRNYLEKLNYFQNIYSTASQTQAIAYLNDIKIQLVLLDIHIKEGNGL 62 +L+ +DD + + L + Y ++ T++ ++ LV+ D+ + + N Sbjct: 6 ILVADDDAAIRTVLNQALSRAGY--DVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 63 ELLKLLRNQHQNTEVIVISAANEAHTVKEAFHLGIVDYLIKPF 105 +LL ++ + V+V+SA N T +A G DYL KPF Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPF 106
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 164 bits (417), Expect = 2e-50 Identities = 76/332 (22%), Positives = 142/332 (42%), Gaps = 43/332 (12%) Query: 1 MAVLILGGAGYIGSHMVDQLITQGKEKVIVVDNLVTGH-------RQAV--HSDAIFYEG 51 M L+ G AG+IG H+ +L+ G +V+ +DNL + R + F++ Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAG-HQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKI 59 Query: 52 DLSDKTFMRQVFRENPDVDAVIHFAAFSLVAESMENPLKYFDNNTAGMIKLLEVMNECDI 111 DL+D+ M +F + V V S+ENP Y D+N G + +LE I Sbjct: 60 DLADREGMTDLFASGH-FERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKI 118 Query: 112 KNIVFSSTAATYGIPEQVPILETAP-QNPINPYGESKLMMETIMKWADQAYGIKFVALRY 170 ++++++S+++ YG+ ++P +P++ Y +K E + YG+ LR+ Sbjct: 119 QHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRF 178 Query: 171 FNVAGDKPDGSIGEDHKPETHLLPIILQVAQGVRDKIMIFGDDYNTPDGTNVRDYVHPFD 230 F V G P G +P+ L + +G I ++ G RD+ + D Sbjct: 179 FTVYG--PWG------RPDMALFKFTKAMLEG--KSIDVYN------YGKMKRDFTYIDD 222 Query: 231 LADAHILAVDYLRQGNES---------------NVFNLGSSTGFSNLQMLEAARRITGKE 275 +A+A I D + + V+N+G+S+ + ++A G E Sbjct: 223 IAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIE 282 Query: 276 IPAQKAARRPGDPDTLIASSEKARQILGWEPK 307 +PGD A ++ +++G+ P+ Sbjct: 283 AKKNMLPLQPGDVLETSADTKALYEVIGFTPE 314
>PF05272#Virulence-associated E family protein Length = 892 Score = 35.0 bits (80), Expect = 5e-04 Identities = 13/56 (23%), Positives = 19/56 (33%), Gaps = 9/56 (16%) Query: 34 IVFVGPSGCGKSTTLRMIAGLEDISEGELKIDGEVVNDKSPKDRDIAMVFQNYALY 89 +V G G GKST + + GL+ S+ I +D Y Sbjct: 599 VVLEGTGGIGKSTLINTLVGLDFFSDTHFDI---------GTGKDSYEQIAGIVAY 645
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 43.3 bits (102), Expect = 5e-07 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 4/54 (7%) Query: 215 LQHILDTSDTSAIIKALWQEQGNLAKTAKALFIHRNSLQYKLDKFTQSSGLNLK 268 +L + I+ AL +GN K A L ++RN+L+ K+ + G+++ Sbjct: 429 YDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIREL----GVSVY 478
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 93.0 bits (231), Expect = 4e-24 Identities = 33/123 (26%), Positives = 62/123 (50%) Query: 2 KILVVEDEFDLNRSIVKLLKKQHYSVDSASNGEEALQFVSVAEYDVIILDVMMPKMDGFT 61 ILV +D+ + + + L + Y V SN ++++ + D+++ DV+MP + F Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 FLKLLRNKGSQVSILMLTARDAVEDRIAGLDFGADDYLVKPFEFGELMARIRAMLRRANR 121 L ++ + +L+++A++ I + GA DYL KPF+ EL+ I L R Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 122 QVS 124 + S Sbjct: 125 RPS 127
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 376 bits (966), Expect = e-133 Identities = 142/311 (45%), Positives = 204/311 (65%), Gaps = 7/311 (2%) Query: 3 KIVVALGGNALGN-----SPEEQLRLVKHTAKSLVALIKKGHEIVVSHGNGPQVGAINLG 57 ++V+ALGGNAL S EE + V+ TA+ + +I +G+E+V++HGNGPQVG++ L Sbjct: 4 RVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLLLH 63 Query: 58 MNFAAESGQGTNFPFPECGAMSQGYIGYHLQQSLLNELRQEGINKEVATIITQIEVDESD 117 M+ + P GAMSQG+IGY +QQ+L NELR+ G+ K+V TIITQ VD++D Sbjct: 64 MDAGQATYGIPAQPMDVAGAMSQGWIGYMIQQALKNELRKRGMEKKVVTIITQTIVDKND 123 Query: 118 QAFSAPTKPIGTFYDKETSEKIAIEKGYTFVEDAGRGYRRVVASPEPKKIIEINSIKTLI 177 AF PTKP+G FYD+ET++++A EKG+ ED+GRG+RRVV SP+PK +E +IK L+ Sbjct: 124 PAFQNPTKPVGPFYDEETAKRLAREKGWIVKEDSGRGWRRVVPSPDPKGHVEAETIKKLV 183 Query: 178 ENDTLVIAGGGGGIPVI-NKGGYEGIAAVIDKDKSSALLAGELAADQLIILTAVDYVYTQ 236 E +VIA GGGG+PVI G +G+ AVIDKD + LA E+ AD +ILT V+ Sbjct: 184 ERGVIVIASGGGGVPVILEDGEIKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNGAALY 243 Query: 237 FGKENQKALTEVNENQMIDYVNQGEFAKGSMLPKVIACMSFLDHNPKGTALITSLNGLED 296 +G E ++ L EV ++ Y +G F GSM PKV+A + F++ + A+I L + Sbjct: 244 YGTEKEQWLREVKVEELRKYYEEGHFKAGSMGPKVLAAIRFIEWGGE-RAIIAHLEKAVE 302 Query: 297 ALDGKLGTRIT 307 AL+GK GT++ Sbjct: 303 ALEGKTGTQVL 313
>PF06580#Sensor histidine kinase Length = 349 Score = 41.0 bits (96), Expect = 6e-06 Identities = 28/175 (16%), Positives = 58/175 (33%), Gaps = 32/175 (18%) Query: 256 NIIKGLGTYF----SVKNESTMALKDIFQIVLSYTRSIIQFRHQDIIILENNKCNLIISN 311 ++ L N ++L D +V SY + + +D + EN N I + Sbjct: 195 EMLTSLSELMRYSLRYSNARQVSLADELTVVDSYL-QLASIQFEDRLQFENQ-INPAIMD 252 Query: 312 YYYLLTIISNIVLNAVE-AIDKQKK-GTISVHTEELEDFIKIEISDNGPGIPDKMKHMIF 369 ++ +V N ++ I + + G I + + + +E+ + G K Sbjct: 253 VQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKEST- 311 Query: 370 KPGFSTKFDANGDIYRGIGLSHVR----ILMEEQYQGTITVCPNQPNGTTFTLLF 420 G GL +VR +L + Q ++ + +L Sbjct: 312 ----------------GTGLQNVRERLQMLYGTEAQIKLS---EKQGKVNAMVLI 347
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 64.9 bits (158), Expect = 4e-14 Identities = 28/144 (19%), Positives = 63/144 (43%), Gaps = 9/144 (6%) Query: 5 IIDDDPTITMILQDIIE-EDFNNTVVRVNNVSSKAYNELLIADVDIVLIDLLMPILDGVT 63 + DDD I +L + + V +N ++ + + D D+V+ D++MP + Sbjct: 8 VADDDAAIRTVLNQALSRAGY--DVRITSNAAT-LWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 64 LVQKIYKQRSDLKFIMISQVKDNDLRQEAYKAGIEFFINKPINIIEVKSVVKRVTDTI-- 121 L+ +I K R DL +++S +A + G ++ KP ++ E+ ++ R Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 122 ---EMQKKLNTIQNLLENTPSYQK 142 +++ L+ + + Q+ Sbjct: 125 RPSKLEDDSQDGMPLVGRSAAMQE 148
>ARGREPRESSOR#Bacterial arginine repressor signature. Length = 149 Score = 128 bits (324), Expect = 6e-41 Identities = 58/149 (38%), Positives = 95/149 (63%), Gaps = 4/149 (2%) Query: 1 MNKKETRHQLIRSLVSETKVRTQHELRELLEKNGVSVTQATLSRDMKELNLIKVNESSDN 60 MNK + RH IR +++ ++ TQ EL ++L+K+G +VTQAT+SRD+KEL+L+KV N Sbjct: 1 MNKGQ-RHIKIREIITANEIETQDELVDILKKDGYNVTQATVSRDIKELHLVKV---PTN 56 Query: 61 ATETYYEIHSISQKRWEERLRFYMEDALVMLFPVQNQIVLKTLPGLAQSFGSILDSILLP 120 Y + + + +L+ + DA V + + IVLKT+PG AQ+ G+++D++ Sbjct: 57 NGSYKYSLPADQRFNPLSKLKRSLMDAFVKIDSASHLIVLKTMPGNAQAIGALMDNLDWE 116 Query: 121 EILATVCGDDTCLIICNNSEEAQKCFEKL 149 EI+ T+CGDDT LIIC ++ + +K+ Sbjct: 117 EIMGTICGDDTILIICRTHDDTKVVQKKI 145
>ARGDEIMINASE#Bacterial arginine deiminase signature. Length = 409 Score = 570 bits (1471), Expect = 0.0 Identities = 193/408 (47%), Positives = 275/408 (67%), Gaps = 8/408 (1%) Query: 6 PIHVFSEIGKLKKVMLHRPGKEIENLMPDYLERLLFDDIPFLEDAQKEHDAFAQALRNEG 65 PI++FSEIG+LKKV+LHRPG+E+ENL P ++ LFDDIP+LE A++EH+ FA L+N Sbjct: 7 PINIFSEIGRLKKVLLHRPGEELENLTPFIMKNFLFDDIPYLEVARQEHEVFASILKNNL 66 Query: 66 VEVLYLENLAAESL-TNQEIREQFIDEYIGEANVRGRATKKAIRELLLNIKDNKELIEKT 124 VE+ Y+E+L +E L ++ + +FI ++I EA ++ T +++ + +I K Sbjct: 67 VEIEYIEDLISEVLVSSVALENKFISQFILEAEIKTDFTINLLKDYFSS-LTIDNMISKM 125 Query: 125 MAGIQKSELPEIPSSEKGLTDLVESNYPFAIDPMPNLYFTRDPFATIGNGVSLNHMFSET 184 ++G+ EL SS L DLV F IDPMPN+ FTRDPFA+IGNGV++N MF++ Sbjct: 126 ISGVVTEELKNYTSS---LDDLVNGANLFIIDPMPNVLFTRDPFASIGNGVTINKMFTKV 182 Query: 185 RNRETLYGKYIFTHHPEYGGKVPMVYEREETTRIEGGDELVLSKDVLAVGISQRTDAASI 244 R RET++ +YIF +HP Y VP+ R E +EGGDELVL+K +L +GIS+RT+A S+ Sbjct: 183 RQRETIFAEYIFKYHPVYKENVPIWLNRWEEASLEGGDELVLNKGLLVIGISERTEAKSV 242 Query: 245 EKLLVNIFKQNLGFKKVLAFEFANNRKFMHLDTVFTMVDYDKFTIHPEIEGDLRVYSVTY 304 EKL +++FK F +LAF+ NR +MHLDTVFT +DY FT + +Y +TY Sbjct: 243 EKLAISLFKNKTSFDTILAFQIPKNRSYMHLDTVFTQIDYSVFTSFTSDDMYFSIYVLTY 302 Query: 305 ENQD--LHIEEEKGDLADLLAKNLGVEKVELIRCGGDNLVAAGREQWNDGSNTLTIAPGV 362 +HI++EK + D+L+ LG K+++I+C G +L+ REQWNDG+N L IAPG Sbjct: 303 NPSSSKIHIKKEKARIKDVLSFYLG-RKIDIIKCAGGDLIHGAREQWNDGANVLAIAPGE 361 Query: 363 VIVYNRNTITNAILESKGLKLIKINGSELVRGRGGPRCMSMPFEREDL 410 +I Y+RN +TN + E G+K+ +I SEL RGRGGPRCMSMP RED+ Sbjct: 362 IIAYSRNHVTNKLFEENGIKVHRIPSSELSRGRGGPRCMSMPLIREDI 409
>AUTOINDCRSYN#Autoinducer synthesis protein signature. Length = 216 Score = 29.8 bits (67), Expect = 0.003 Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 7/66 (10%) Query: 6 NHLPYQRAASLY-IRFSVFVIER-----NIKMEEEFDDNDEQDTIYAVLYDGKQPVSTGR 59 L ++ L+ +R F +R EFD D +T Y + + R Sbjct: 10 TLLSETKSGELFTLRKETFK-DRLNWAVQCTDGMEFDQYDNNNTTYLFGIKDNTVICSLR 68 Query: 60 FLPETQ 65 F+ Sbjct: 69 FIETKY 74
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 412 bits (1061), Expect = e-148 Identities = 147/314 (46%), Positives = 211/314 (67%), Gaps = 6/314 (1%) Query: 6 QKIVVALGGNAIL--STDASAKAQQEALINTSKSLVKLIKEGHDVIVTHGNGPQVGNLLL 63 +++V+ALGGNA+ S + + + T++ + ++I G++V++THGNGPQVG+LLL Sbjct: 3 KRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLLL 62 Query: 64 QQAASDSEKN-PAMPLDTCVAMTEGSIGFWLQNALNNELQEQGIDKEVATVVTQVIVDEK 122 A + PA P+D AM++G IG+ +Q AL NEL+++G++K+V T++TQ IVD+ Sbjct: 63 HMDAGQATYGIPAQPMDVAGAMSQGWIGYMIQQALKNELRKRGMEKKVVTIITQTIVDKN 122 Query: 123 DQAFTNPTKPIGPFLSEEDAKKQAQETGSKFKEDAGRGWRKVVPSPKPVGIKEASVIRRL 182 D AF NPTKP+GPF EE AK+ A+E G KED+GRGWR+VVPSP P G EA I++L Sbjct: 123 DPAFQNPTKPVGPFYDEETAKRLAREKGWIVKEDSGRGWRRVVPSPDPKGHVEAETIKKL 182 Query: 183 VDSGVVVISAGGGGVPVIEDANTKALKGVEAVIDKDFASQTLSELVDADLFIVLTGVDNV 242 V+ GV+VI++GGGGVPVI + +KGVEAVIDKD A + L+E V+AD+F++LT V+ Sbjct: 183 VERGVIVIASGGGGVPVILEDG--EIKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNGA 240 Query: 243 FVNFNKPNQEKLEEVTVSQMKQYITENQFAPGSMLPKVEAAIAFVENKPESRAIITSLEN 302 + + ++ L EV V ++++Y E F GSM PKV AAI F+E RAII LE Sbjct: 241 ALYYGTEKEQWLREVKVEELRKYYEEGHFKAGSMGPKVLAAIRFIEW-GGERAIIAHLEK 299 Query: 303 IDNVLAQNAGTQIV 316 L GTQ++ Sbjct: 300 AVEALEGKTGTQVL 313