>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 79.7 bits (196), Expect = 1e-20 Identities = 29/153 (18%), Positives = 62/153 (40%), Gaps = 9/153 (5%) Query: 5 KGGAGKSEKTKNRLVSASRDLFAKKGYSETSIRDILEAAEISKGNLYHHFKGKEFLFLHI 64 + ++++T+ ++ + LF+++G S TS+ +I +AA +++G +Y HFK K LF I Sbjct: 3 RKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI 62 Query: 65 MEEDHRVMIETWREMEADLKDAAEK------LTGFAELLSRMSINYPLMRASEEFYASAF 118 E + E E +A + ++ L+ Sbjct: 63 WELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEE--RRRLLMEIIFHKCEFV 120 Query: 119 TSEEVVKRL-NKIDIEYDDVMREILEEGNQDGS 150 VV++ + +E D + + L+ + Sbjct: 121 GEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKM 153
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 248 bits (636), Expect = 3e-81 Identities = 94/364 (25%), Positives = 166/364 (45%), Gaps = 14/364 (3%) Query: 12 LIILLSNIFIAFLGIGLIIPVMPLFMNVMHLTG---STMGYLVAAFAVAQLIASPIAGRW 68 LI++LS + + +GIGLI+PV+P + + + + G L+A +A+ Q +P+ G Sbjct: 7 LIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGAL 66 Query: 69 VDRFGRKIMILAGLFLFALSELTFGLGTHVSILYFARVLGGISAAFIMPAVTAYVADITT 128 DRFGR+ ++L L A+ + +LY R++ GI+ A AY+ADIT Sbjct: 67 SDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGA-TGAVAGAYIADITD 125 Query: 129 VQERSKAMGYVSAAISTGFIIGPGIGGFIADHGVRMPFFFAAGIAFIAVISSVFMLKEPL 188 ER++ G++SA G + GP +GG + PFF AA + + ++ F+L E Sbjct: 126 GDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESH 185 Query: 189 TKEERAKQLESVKEST--FLKDLKKSIHPNYLIAFIIVFVLAFGLSAYETVFSLFTNHKF 246 E R + E++ + + FI+ V ++ +F +F Sbjct: 186 KGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVP----AALWVIFGEDRF 241 Query: 247 GFTPKDIAIIITFSSIVAVLIQVLAFGRLVNFLGEKKVIQLCLII-GAVLAFVSTVMSGF 305 + I I + I+ L Q + G + LGE++ + L +I G ++ G+ Sbjct: 242 HWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGW 301 Query: 306 LPVLAVTCIIFLAFDLLRPALTTYLSKIAGN-QQGFVAGMNSTYTSLGTIFGPALGGILF 364 + + + + PAL LS+ +QG + G + TSL +I GP L ++ Sbjct: 302 MAFPIMVLLASGGIGM--PALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIY 359 Query: 365 DMNI 368 +I Sbjct: 360 AASI 363 Score = 33.6 bits (77), Expect = 0.001 Identities = 33/174 (18%), Positives = 61/174 (35%), Gaps = 5/174 (2%) Query: 219 IAFIIVFVLAFGLSAYETVFSLFTN--HKFGFTPKDIAIIITFSSIVAVLIQVLAFGRLV 276 + V + A G+ V I++ +++ + G L Sbjct: 9 VILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVL-GALS 67 Query: 277 NFLGEKKVIQLCLIIGAVLAFVSTVMSGFLPVLAVTCIIFLAFDLLRPALTTYLSKI-AG 335 + G + V+ + L GA + + + FL VL + I+ Y++ I G Sbjct: 68 DRFGRRPVLLVSLA-GAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADITDG 126 Query: 336 NQQGFVAGMNSTYTSLGTIFGPALGGILFDMNIHFPFLFAGVVLFLGLGLTFVW 389 +++ G S G + GP LGG++ + H PF A + L Sbjct: 127 DERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFL 180
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 26.8 bits (59), Expect = 0.042 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 9/36 (25%) Query: 98 TTMLISTISP---------FLFITPLLFYAGLAFPR 124 M+++ ++P L ITP+LF +G FP Sbjct: 164 LGMVVTALAPSYDYFIFYQTLVITPILFLSGAVFPV 199
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 62.2 bits (151), Expect = 2e-13 Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 2/102 (1%) Query: 4 IAIAEDDFRIAQIHEKFIEHLDGFNVIGKAINAKDTISLLEKRQPDLLLLDIYMPDELGT 63 I +A+DD I + + + G++V NA + DL++ D+ MPDE Sbjct: 6 ILVADDDAAIRTVLNQALSRA-GYDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 64 DLLPLIRGRFPSVDIIIITASAETRLLQEALRSGVSHYVIKP 105 DLLP I+ P + +++++A +A G Y+ KP Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKP 105
>cloacin#Cloacin signature. Length = 551 Score = 33.9 bits (77), Expect = 0.001 Identities = 32/121 (26%), Positives = 46/121 (38%), Gaps = 3/121 (2%) Query: 129 TGATGATGGTGATGVIGSTGATGATGITGATGVTGVTGITGTTGATGVTGVTGSTGVTGA 188 +G G TGA G+ G TG+ G + +G + G G +GS G Sbjct: 2 SGGDGRGHNTGAHSTSGNING-GPTGLGVGGGASDGSGWSSENNPWG--GGSGSGIHWGG 58 Query: 189 TGVTGATGATGATGVTGVTGATGAGAIIPYASGLPTAVTTIAGGLIGTVSLVGFGNSVTG 248 G G G +G TG + P A G P T AGGL ++S ++ Sbjct: 59 GSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIAD 118 Query: 249 V 249 + Sbjct: 119 I 119
>LIPPROTEIN48#Mycoplasma P48 major surface lipoprotein signature. Length = 428 Score = 32.7 bits (74), Expect = 0.001 Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 1/64 (1%) Query: 166 TVSTETLELN-LFYSGGQSLIITLTFVDQAPSAGTITYDVVLTVAGSVNVTGVNVTNRAI 224 T ++L+ F +G + + + P+ V+L+VAG V + N+ Sbjct: 230 IYHTSPVKLDSGFTAGEKMNTVINNVLSSTPADVKYNPHVILSVAGPATFETVRLANKGQ 289 Query: 225 NMIG 228 +IG Sbjct: 290 YVIG 293
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 67.2 bits (164), Expect = 2e-14 Identities = 74/348 (21%), Positives = 135/348 (38%), Gaps = 21/348 (6%) Query: 26 VISFMGIGLVDPILPAIAAQLHASPSEVS---LLFTSYLLVTGFMMFFSGAISSRIGAKW 82 + +GIGL+ P+LP + L S + +L Y L+ GA+S R G + Sbjct: 15 ALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRP 74 Query: 83 TLLLGLIFIIVFAALGGSSSSIAQLVGYRGGWGLGNALFISTALAVIVGVSVGGS-AKAI 141 LL+ L V A+ ++ + L R G+ A + A A I ++ G A+ Sbjct: 75 VLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATG-AVAGAYIADITDGDERARHF 133 Query: 142 ILYEAALGLGISVGPLAGGELGSISWRAPFFGVSVLMFIALCAISLMLPKLPKPAKRVGV 201 A G G+ GP+ GG +G S APFF + L + +LP+ K +R Sbjct: 134 GFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLR 193 Query: 202 FDAMKAL-KYKGLLTMAVSAFLYNFGFFILLA----------YSPFVLDLDEHGLGYVFF 250 +A+ L ++ M V A L F + L + D +G Sbjct: 194 REALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLA 253 Query: 251 GWGLLLAITSVFTAPLVHKALGTVGSLVVLFIAFAVILIVMGIWTDHQTLIITCIVVAGA 310 +G+L ++ V LG +L++ IA I++ T +++A Sbjct: 254 AFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASG 313 Query: 311 VLGM--VNTIMTTAVMGSAPVERSIASSAYSSVRFIGGALAPWIAGML 356 +GM + +++ V + + +++ + + P + + Sbjct: 314 GIGMPALQAMLSRQV---DEERQGQLQGSLAALTSLTSIVGPLLFTAI 358
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 173 bits (439), Expect = 6e-54 Identities = 59/281 (20%), Positives = 124/281 (44%), Gaps = 19/281 (6%) Query: 44 IVQGALEDLDVIERALGEYEIDTVFHLAAQAIVGVANRNPISTFEANILGTWNILEACRR 103 + L D + + + VF + V + NP + ++N+ G NILE CR Sbjct: 56 FHKIDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRH 115 Query: 104 HPLIKRVIVASSDKAYGDQPTLPYDE-NMPLQGKHPYDVSKSCADLLSHTYFNTYGLPVC 162 + I+ ++ ASS YG +P+ + Y +K +L++HTY + YGLP Sbjct: 116 NK-IQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPAT 174 Query: 163 ITRCGNLYGG-GDLNFNRIIPQTIQLVLNGEAPEIRSDGTFIRDYFYIEDAVEAYLLLAE 221 R +YG G + + + + +L G++ ++ + G RD+ YI+D EA + L + Sbjct: 175 GLRFFTVYGPWGRPDM--ALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQD 232 Query: 222 KMEELNLA--------------GEAFNFSNEIQLTVLELVEKILKAMDSDLKPKVLNQGS 267 + + +N N + +++ ++ + A+ + K +L Sbjct: 233 VIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLPLQP 292 Query: 268 HEIKHQYLSAEKARKLLNWTPAHTIDEGLEKTIEWYKAFFQ 308 ++ + +++ +TP T+ +G++ + WY+ F++ Sbjct: 293 GDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDFYK 333
>cloacin#Cloacin signature. Length = 551 Score = 28.5 bits (63), Expect = 0.004 Identities = 20/60 (33%), Positives = 23/60 (38%), Gaps = 4/60 (6%) Query: 10 GGFGGGYGGFGGYPGYGFGG----YGGYGGYPGYGFGGGYGYPGYGFGGYGGFGGFGGYG 65 GG G G G G G+ +GG G + GG G G G GG G GG Sbjct: 22 GGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNL 81 Score = 28.5 bits (63), Expect = 0.004 Identities = 26/76 (34%), Positives = 28/76 (36%), Gaps = 1/76 (1%) Query: 9 GGGFGGGYGGFGGYPGYGFGGYGGYGGYPGYGFGGGYGYPGYGFGGYGGFGGFGGYGGFG 68 GG G G G GG G G G G G+ +GG G G GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGS-GIHWGGGSG 61 Query: 69 GYPGYGFGGYGGGYGG 84 G G G GGG G Sbjct: 62 HGNGGGNGNSGGGSGT 77 Score = 26.6 bits (58), Expect = 0.018 Identities = 19/59 (32%), Positives = 22/59 (37%), Gaps = 7/59 (11%) Query: 8 YGGGFGGGYGGFGGYPGYGFGGYGGYGGYPGYGFGG-------GYGYPGYGFGGYGGFG 59 +GGG G G GG GG G GG G G +G+P G GG Sbjct: 46 WGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 25.4 bits (55), Expect = 0.040 Identities = 24/72 (33%), Positives = 27/72 (37%), Gaps = 5/72 (6%) Query: 9 GGGFGGGYGGFGGYPGYGFGGYGGYGGYPGYGFGGGYGYPGYGFGGYGGFGGFGGYGGFG 68 G G+ +GG G G GG G G GGG G G G G G F Sbjct: 36 GSGWSSENNPWGGGSGSGIHWGGGSGH----GNGGGNGNSGGGSGTGGNLSAVAAPVAF- 90 Query: 69 GYPGYGFGGYGG 80 G+P G GG Sbjct: 91 GFPALSTPGAGG 102
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 40.7 bits (95), Expect = 3e-06 Identities = 47/198 (23%), Positives = 81/198 (40%), Gaps = 18/198 (9%) Query: 50 ALVGSTDDSKAMVNEWMVAGLLSITAVT-----TTLGAFGIMVKDKESKRTYD-FLTAPL 103 +VG ++ AG+++ +A+T T AFG M E +RT++ L L Sbjct: 55 VMVGRVGG--VSYTAFLAAGMVATSAMTAATFETIYAAFGRM----EGQRTWEAMLYTQL 108 Query: 104 SRATIQLSYVIHSFVIGLIFSFIAFLGCEIFLVSTGSKLLSGTDILEVLGIIILSVALSS 163 I L + + + G I +V+ +L L +I L+ + Sbjct: 109 RLGDIVLGEMAWAATKAAL------AGAGIGVVAAALGYTQWLSLLYALPVIALTGLAFA 162 Query: 164 SINLFLTLFIHTQNAFSTLSTIVGTAIGFLCGVYVPIGGVPVFVQKIIMYFPISHTAVLF 223 S+ + +T + + F T+V T I FL G P+ +P+ Q + P+SH+ L Sbjct: 163 SLGMVVTALAPSYDYFIFYQTLVITPILFLSGAVFPVDQLPIVFQTAARFLPLSHSIDLI 222 Query: 224 RKAFMTDSVDKVFKHASA 241 R + V V +H A Sbjct: 223 RPIMLGHPVVDVCQHVGA 240
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 710 bits (1833), Expect = 0.0 Identities = 234/1078 (21%), Positives = 461/1078 (42%), Gaps = 87/1078 (8%) Query: 4 IINFVLKNKFAVWLMTIIVTVAGLYAGMNMKQESIPDVNMPYLSVNTTYPGAAPSQVADD 63 + NF ++ W++ II+ +AG A + + P + P +SV+ YPGA V D Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 64 VTKPIEQAVQNLEGVSVVTSTSSENVSS-VMIEYDYNKDMDKAKTEVAEALDSV--SLPD 120 VT+ IEQ + ++ + ++STS S + + + D D A+ +V L LP Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 121 DAKKPDISRYSLNSFPILTLSVTS--GKSSLEDLTKNVENTLVPKLEGIQGVASVQVSGQ 178 + ++ IS +S ++ S ++ +D++ V + + L + GV VQ+ G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 179 QEEQVEFSFKDKKMKEYGLDEDTVKKVIQGSDVNTPLG-----LYTFGNK-EKSVVVNGD 232 Q + + +Y L V ++ + G G + S++ Sbjct: 181 QY-AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 233 ITSIKDLKDMRIPVTSSSAAQGQAGGAGAASAADAQAMQQAQQSAAAGVPTVKLSDIADI 292 + ++ + + V S + V+L D+A + Sbjct: 240 FKNPEEFGKVTLRVNSDGS-------------------------------VVRLKDVARV 268 Query: 293 KD-VKKAESISRTNGKDSIGINIVKANDANTVEVADAIKDELNQYKKDH-KGFKYSSTLD 350 + + I+R NGK + G+ I A AN ++ A AIK +L + + +G K D Sbjct: 269 ELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYD 328 Query: 351 MAEPITESVDTMLSKAIFGAIFAVVIILLFLRDIKSTMISIVSIPLSLLIALLVLNQLDV 410 + S+ ++ + +++ LFL+++++T+I +++P+ LL +L Sbjct: 329 TTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGY 388 Query: 411 TLNIMTLGAMTVAIGRVVDDSIVVIENIYRRMRLKDEPLRGKQLVREATKEMFKPIMSST 470 ++N +T+ M +AIG +VDD+IVV+EN+ R M ++ L K+ ++ ++ ++ Sbjct: 389 SINTLTMFGMVLAIGLLVDDAIVVVENVERVMM--EDKLPPKEATEKSMSQIQGALVGIA 446 Query: 471 IVTIAVFLPLAMVGGQIGELFMPFALTIVFALAASLLISITLVPMLAHSLFKKSLTGAPV 530 +V AVF+P+A GG G ++ F++TIV A+A S+L+++ L P L +L K PV Sbjct: 447 MVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLK------PV 500 Query: 531 KAKEHKP------------GRLANFYKKVLHWSLRHKWITSIIAVLMLVGSLFLVPLIGA 578 A+ H+ N Y + L +I L++ G + L + + Sbjct: 501 SAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPS 560 Query: 579 SYLPAQADKTMQLTYTPEPGETKSEAEKAAQKAEDMLLK--RKHVDTVQYSLGSQSPLGG 636 S+LP + G T+ +K + D LK + +V++V +++ S G Sbjct: 561 SFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKNEKANVESV-FTVNGFSFSGQ 619 Query: 637 SSNGALFYV--KYEDDTPDFDKEKDNVLKEIK-KTSSRGEWKSQNF---------SSSGN 684 + N + +V K ++ + + V+ K + + F +++G Sbjct: 620 AQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDGFVIPFNMPAIVELGTATGF 679 Query: 685 NNELTYYVYGDSESDIKGTVKDIEGIMKKQ-KDLKDVNSGLSSTYDEYTFVADQEKLSKQ 743 + EL ++ + + G+ + L V ++ DQEK Sbjct: 680 DFELIDQAGLGHDA-LTQARNQLLGMAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQAL 738 Query: 744 GLTASQISQAMMSQTSQSPLTTVKKDGKELDVNIKTEKDQYKSVKELEDKTITSPAGQEV 803 G++ S I+Q + + + + G+ + ++ + ++++ + S G+ V Sbjct: 739 GVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRMLPEDVDKLYVRSANGEMV 798 Query: 804 KIGDVAKVKNGTTSDTISKRDGKVYADVTATVTSDNVTK-VSSAVQKKVDKLDHPDNVSI 862 S + + +G ++ + + ++ KL P + Sbjct: 799 PFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAMALMENLASKL--PAGIGY 856 Query: 863 DTGGVSADIADSFTKLGLAMLAAIAIVYLVLVITFGGALAPFAILFSLPFTVIGALAGLY 922 D G+S S + + + +V+L L + P +++ +P ++G L Sbjct: 857 DWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAAT 916 Query: 923 VSGETISLNAMIGMLMLIGIVVTNAIVLIDRVIH-KEAEGLSTREALLEAGSTRLRPILM 981 + + + M+G+L IG+ NAI++++ E EG EA L A RLRPILM Sbjct: 917 LFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILM 976 Query: 982 TAIATIGALLPLALGFEGGSQVISKGLGVTVIGGLISSTLLTLLIVPIVYEVLAKFRK 1039 T++A I +LPLA+ GS +G+ V+GG++S+TLL + VP+ + V+ + K Sbjct: 977 TSLAFILGVLPLAISNGAGSGA-QNAVGIGVMGGMVSATLLAIFFVPVFFVVIRRCFK 1033 Score = 146 bits (371), Expect = 7e-38 Identities = 99/530 (18%), Positives = 205/530 (38%), Gaps = 60/530 (11%) Query: 551 SLRHKWITSIIAVLMLVGSLFLVPLIGASYLPAQADKTMQLTYTPEPGETKSEAEKA-AQ 609 +R ++A+++++ + + + P A + + PG + Q Sbjct: 5 FIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSV-SANYPGADAQTVQDTVTQ 63 Query: 610 KAEDMLLKRKHVDTVQYSLGSQSPLGGSSNGALFYVKYEDDTPDFDKEKDNVLKEI---- 665 E + ++ + S S GS + ++ T D D + V ++ Sbjct: 64 VIEQNMNGIDNLMYMS----STSDSAGSV---TITLTFQSGT-DPDIAQVQVQNKLQLAT 115 Query: 666 --------------KKTSSRGEWKSQNFSSSGNNNELTYYVYGDSESDIKGTVKDIEGIM 711 +K+SS + S + + Y S +K T+ + G+ Sbjct: 116 PLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASN--VKDTLSRLNGV- 172 Query: 712 KKQKDLKDVNSGLSSTYDEYTFVADQEKLSKQGLTASQISQAMMSQTSQSP----LTTVK 767 DV + D + L+K LT + + Q Q T Sbjct: 173 ------GDVQLFGAQY--AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPA 224 Query: 768 KDGKELDVNIKTEKDQYKSVKELEDKTI-TSPAGQEVKIGDVAKVKNGTTSDTISKR-DG 825 G++L+ +I + ++K+ +E T+ + G V++ DVA+V+ G + + R +G Sbjct: 225 LPGQQLNASI-IAQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARING 283 Query: 826 KVYADVTATVTSD-NVTKVSSAVQKKVDKL--DHPDNVSID-----TGGVSADIADSFTK 877 K A + + + N + A++ K+ +L P + + T V I + Sbjct: 284 KPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKT 343 Query: 878 LGLAMLAAIAIVYLVLVITFGGALAPFAILFSLPFTVIGALAGLYVSGETISLNAMIGML 937 L A++ ++YL L A ++P ++G A L G +I+ M GM+ Sbjct: 344 LFEAIMLVFLVMYLFL----QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMV 399 Query: 938 MLIGIVVTNAIVLIDRVI-HKEAEGLSTREALLEAGSTRLRPILMTAIATIGALLPLALG 996 + IG++V +AIV+++ V + L +EA ++ S ++ A+ +P+A Sbjct: 400 LAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAF- 458 Query: 997 FEGGSQVISKGLGVTVIGGLISSTLLTLLIVPIVYEVLAKFRKKKPGTEE 1046 F G + I + +T++ + S L+ L++ P + L K + + Sbjct: 459 FGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENK 508 Score = 122 bits (308), Expect = 2e-30 Identities = 78/545 (14%), Positives = 180/545 (33%), Gaps = 64/545 (11%) Query: 3 HIINFVLKNKFAVWLMTIIVTVAGLYAGMNMKQESIPDVNMPYLSVNTTYPGAAPSQVAD 62 + + +L + L+ ++ + + + +P+ + P A + Sbjct: 528 NSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQ 587 Query: 63 DVTKPIEQAVQNLE--GVSVVTSTS-------SENVSSVMIEYDYNKDMDKAKTEVAEAL 113 V + E V V + + ++N + ++ + + + Sbjct: 588 KVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVI 647 Query: 114 DSVSLPDDAKKPDISRYSLNSFPILTLSVTSG---------KSSLEDLTKNVENTLVPKL 164 + K D N I+ L +G + LT+ L Sbjct: 648 HRAKMEL-GKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAA 706 Query: 165 EGIQGVASVQVSGQQEE-QVEFSFKDKKMKEYGLDEDTVKKVIQGSDVNTPLGLYTFGNK 223 + + SV+ +G ++ Q + +K + G+ + + I + T + + + Sbjct: 707 QHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGR 766 Query: 224 EKSVVVNGDITSIKDLKDM-RIPVTSSSAAQGQAGGAGAASAADAQAMQQAQQSAAAGVP 282 K + V D +D+ ++ V S++ G+ Sbjct: 767 VKKLYVQADAKFRMLPEDVDKLYVRSAN---GE--------------------------- 796 Query: 283 TVKLSDIADIKDVKKAESISRTNGKDSIGINIVKANDANTVEVADAIKDELNQYKKDHKG 342 V S V + + R NG S+ I A ++ + ++ N K G Sbjct: 797 MVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAMALME---NLASKLPAG 853 Query: 343 FKYSSTLDMAEPITESVDTMLSKAIFGAIFAVVIILLF--LRDIKSTMISIVSIPLSLLI 400 Y T E + + A+ F VV + L + ++ +PL ++ Sbjct: 854 IGYDWT---GMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVG 910 Query: 401 ALLVLNQLDVTLNIMTLGAMTVAIGRVVDDSIVVIENIYRRMRLKDEPLRGKQLVREATK 460 LL + ++ + + IG ++I+++E M + + + + A + Sbjct: 911 VLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVV--EATLMAVR 968 Query: 461 EMFKPIMSSTIVTIAVFLPLAMVGGQIGELFMPFALTIVFALAASLLISITLVPML---A 517 +PI+ +++ I LPLA+ G + ++ + ++ L++I VP+ Sbjct: 969 MRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFVVI 1028 Query: 518 HSLFK 522 FK Sbjct: 1029 RRCFK 1033
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 69.7 bits (170), Expect = 2e-16 Identities = 44/205 (21%), Positives = 79/205 (38%), Gaps = 16/205 (7%) Query: 3 EKKEKIIKTGIHLFAKKGFSSTTIQEIAGECGISKGAFYLHFKSKEDLLLSACEYYIGMS 62 E ++ I+ + LF+++G SST++ EIA G+++GA Y HFK K DL E Sbjct: 11 ETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESN- 69 Query: 63 MEEIKKIKTEHQHKPPKDVFR----KQIAYQFQEFMEHKDFIILLLSEKVIPENQKVKQY 118 + E++ P V R + E I+ + + E V+Q Sbjct: 70 IGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQ- 128 Query: 119 FHEANIQFNMLYRDALLSVYGDAVTPFLADASVMAQG---IVSSYIHFLIFNEHTAFRTE 175 + N+ D + + + A +M + I+ YI L+ E+ F + Sbjct: 129 -AQRNLCLES--YDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLM--ENWLFAPQ 183 Query: 176 NVAAFLIAR--IDDLITGLIKDNPD 198 + AR + L+ + Sbjct: 184 SFDLKKEARDYVAILLEMYLLCPTL 208
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 90.5 bits (224), Expect = 6e-25 Identities = 34/201 (16%), Positives = 72/201 (35%), Gaps = 9/201 (4%) Query: 1 MAKQSSGKYEKILQAAIEVISEKGLDKASISEIVKKAGTAQGTFYLYFSSKNALISAIAE 60 +++ + IL A+ + S++G+ S+ EI K AG +G Y +F K+ L S I E Sbjct: 5 TKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWE 64 Query: 61 NLLDTTLDRIKGKT-DGSEDFWTLLDILVDETFH--ITRLHKDIIVLCYSGLAIDH-SME 116 + D ++L ++ +T + +++ M Sbjct: 65 LSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMA 124 Query: 117 KWE----AIYQPYYSWLEGVINTAIEQGEVHSGIHVRWTARTIINVVENAAERFYIGCEQ 172 + + Y +E + IE + + + R A + + E ++ Q Sbjct: 125 VVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMEN-WLFAPQ 183 Query: 173 DVDLEVYKKEIFSFLKRSLQK 193 DL+ ++ + L Sbjct: 184 SFDLKKEARDYVAILLEMYLL 204
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 43.7 bits (103), Expect = 8e-07 Identities = 70/373 (18%), Positives = 131/373 (35%), Gaps = 22/373 (5%) Query: 10 LQANQRKKLILLVIGVILIGANLRAPLTSVGPLVSSIRDSLGMTNAAAGTITTVPLLAFA 69 ++ N+ +IL + + +G L P+ L +RD + + A + L A Sbjct: 1 MKPNRPLIVILSTVALDAVGIGLIMPV-----LPGLLRDLVHSNDVTAHYGILLALYALM 55 Query: 70 --CLSPFVPLLSRRFGTEIVLLSSLIVLTAGTLLRSIAG-IGTLFFGTILLGLS---IAV 123 +P + LS RFG VLL SL + + A + L+ G I+ G++ AV Sbjct: 56 QFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAV 115 Query: 124 CNVLLPSLIK-HKFPGNLGIMTGVYSVSMNLCGAIASGISVPIASSAGLGWKGALGCWAI 182 + + + + G M+ + M + G + G+ + A AL Sbjct: 116 AGAYIADITDGDERARHFGFMSACFGFGM-VAGPVLGGLMGGFSPHAPFFAAAALN---G 171 Query: 183 LSFIAFVMWIPQMRGREL-PVRTTGTNGEKKSSLLR--SRLAWKVTMFMGLQSLIFYTVI 239 L+F+ +P+ E P+R N R + +A + +F +Q + Sbjct: 172 LNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAA 231 Query: 240 AWLPEILQQNGLSSSKAGWMLSLMQFSVLPITFIVPIAAAKMKNQRALAGLTALFFLIGI 299 W+ + ++ G L+ F +L I L G Sbjct: 232 LWVIFGEDRFHWDATTIGISLAA--FGILHSLAQAMITGPVAARLGERRALMLGMIADGT 289 Query: 300 AGVLFGSPALTPL-WVILIGIAGGCAFSLAMMFFSLRTRHVHEAAALSGMAQSFGYLLAA 358 +L + + I++ +A G A+ R L G + L + Sbjct: 290 GYILLAFATRGWMAFPIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSI 349 Query: 359 FGPLVFGLLHDIT 371 GPL+F ++ + Sbjct: 350 VGPLLFTAIYAAS 362
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 29.0 bits (65), Expect = 0.015 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 11/49 (22%) Query: 39 DLMKQFDV------SRNTLREAIRALVHAGLLQTRQGSGTYVSSSSVLG 81 + Q V S+ T ALV AG LQ +G +VS++ +G Sbjct: 283 NDYDQVVVGAEYDFSKRT-----SALVSAGWLQEGKGESKFVSTAGGVG 326
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 61.8 bits (150), Expect = 1e-12 Identities = 67/355 (18%), Positives = 121/355 (34%), Gaps = 31/355 (8%) Query: 57 IYGISQ----PIIGRLVDKLGPRMILSFSTFVVGVSFVLTSFVNHPWQLFILYGIVISVG 112 +Y + Q P++G L D+ G R +L S V + + + W L+I G +++ Sbjct: 51 LYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYI--GRIVAGI 108 Query: 113 VGGASNVAATVVVTNWFNEKRGLAFGIMEAGFGAGQMLLVPGSLILIQWFNWKLTVVILG 172 G VA + ++R FG M A FG G M+ P L+ F+ Sbjct: 109 TGATGAVAGAYIADITDGDERARHFGFMSACFGFG-MVAGPVLGGLMGGFSPHAPFFAAA 167 Query: 173 LILMVIVFPVILLFLRNHPGEMGLSPMGGFMKAEAESEQHTARFSVWTVFCKKQFWFLIL 232 + + L +H GE + + W + + Sbjct: 168 ALNGLNFLTGCFLLPESHKGE---------RRPLRREALNPLASFRWARGMTVVAALMAV 218 Query: 233 PFAICGFTTTGLMDTHLIPFSHDHGFSTSVTSAAVSVLAGFNILGIIISGIAADR---WS 289 F + + F + F T+ +S LA F IL + + Sbjct: 219 FFIMQLVGQVPA--ALWVIFG-EDRFHWDATTIGIS-LAAFGILHSLAQAMITGPVAARL 274 Query: 290 SKKMLILLYVIRALSICILL--YSHHPVILLIFATLFGLVDFATVAPTQMLATQYFKQYS 347 ++ ++L +I + ILL + + I L A ML+ Q + Sbjct: 275 GERRALMLGMIADGTGYILLAFATRGWMAFPIM-VLLASGGIGMPALQAMLSRQ-VDEER 332 Query: 348 VGFILGWLFLSHQIGSALGAYVPGFLYNEMGNYDLSFYFSIIILLGAAIFTFLLP 402 G + G L + S +G + +Y ++ + + GAA++ LP Sbjct: 333 QGQLQGSLAALTSLTSIVGPLLFTAIY----AASITTWNGWAWIAGAALYLLCLP 383
>PF01206#SirA family protein Length = 76 Score = 92.5 bits (230), Expect = 6e-29 Identities = 31/72 (43%), Positives = 47/72 (65%) Query: 4 DKVLDAKGLACPMPIVRTKKAMNELESGQILEVHATDKGAKSDLAAWSKSGGHDLLEQTD 63 D+ LDA GL CP+PI++ KK + + +G++L V ATD G+ D ++SK GH+LLEQ + Sbjct: 5 DQSLDATGLNCPLPILKAKKTLATMNAGEVLYVMATDPGSVKDFESFSKQTGHELLEQKE 64 Query: 64 EGDVLKFWIKKG 75 E F +K+ Sbjct: 65 EDGTYHFRLKRA 76
>PF01206#SirA family protein Length = 76 Score = 89.0 bits (221), Expect = 6e-26 Identities = 28/69 (40%), Positives = 44/69 (63%) Query: 8 LDAKGLSCPMPIVKTKKKIKELKAGDILEIQATDKGSAADLQAWAKSSGHEYLGTETEGE 67 LDA GL+CP+PI+K KK + + AG++L + ATD GS D ++++K +GHE L + E Sbjct: 8 LDATGLNCPLPILKAKKTLATMNAGEVLYVMATDPGSVKDFESFSKQTGHELLEQKEEDG 67 Query: 68 VLRHFLRKG 76 L++ Sbjct: 68 TYHFRLKRA 76
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 36.8 bits (85), Expect = 1e-05 Identities = 16/93 (17%), Positives = 35/93 (37%), Gaps = 5/93 (5%) Query: 46 LNQKEGIQFVAEQNDKLVGFATLYFTYNTLFAQTTSVLNDLYVLEDARGTDAANGLFKAC 105 + ++ F+ + +G + +N +++ D+ V +D R L Sbjct: 60 VEEEGKAAFLYYLENNCIGRIKIRSNWNGY-----ALIEDIAVAKDYRKKGVGTALLHKA 114 Query: 106 EKFSKDNDYADMFWLTAHDNKRAQRFYEKMGGT 138 +++K+N + + T N A FY K Sbjct: 115 IEWAKENHFCGLMLETQDINISACHFYAKHHFI 147
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 57.1 bits (138), Expect = 1e-11 Identities = 56/283 (19%), Positives = 98/283 (34%), Gaps = 49/283 (17%) Query: 8 KLIQNGHQVFALTRGNRS---------NTFLKRIGVTPVKADAMDRDAVLNAFRKIQPEV 58 +L++ GHQV + N L + G K D DR+ + + F E Sbjct: 19 RLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDLADREGMTDLFASGHFER 78 Query: 59 VVHQLTSL-TSYNLEEN---ARIRIIGTRNIVDACHEVGVKRIIAQSLSMAYEPGLIPAN 114 V L Y+LE A + G NI++ C ++ ++ S S Y N Sbjct: 79 VFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHLLYASSSSVYG-----LN 133 Query: 115 EDVPLDLDAPNPRKVNVIG--------VASLESAVAELPEYVILRYGLLYGSGTWYEKNG 166 +P D V++ +A S + LP LR+ +Y G W + Sbjct: 134 RKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLP-ATGLRFFTVY--GPWGRPDM 190 Query: 167 MI---GRQVLKGET----KADDSITSFLHVEDAAQASVEALNWPNGPVNIVDDE---PTT 216 + + +L+G++ F +++D A+A + + E P Sbjct: 191 ALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPHADTQWTVETGTPAA 250 Query: 217 GKEWLTLFASEIGAPKPI----FIDGSERGERGASNGKAKREY 255 ++ IG P+ +I E A +AK+ Sbjct: 251 SIAPYRVY--NIGNSSPVELMDYIQALED----ALGIEAKKNM 287
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 103 bits (257), Expect = 1e-29 Identities = 38/176 (21%), Positives = 74/176 (42%), Gaps = 4/176 (2%) Query: 1 MKKKAEERKNQILRAAFQAVSTQGYNSVTLQSIADHAGVSKGVVHYYFDNKEDTLSQLLE 60 K++A+E + IL A + S QG +S +L IA AGV++G ++++F +K D S++ E Sbjct: 5 TKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWE 64 Query: 61 WITNKIYKHEL-KAVDSESTPLDKLKAYVNSIF---VSPEENEKFYKVYLDFLSQATRNE 116 + I + EL PL L+ + + V+ E ++ Sbjct: 65 LSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMA 124 Query: 117 TYRKINHSFYQQCWGITSNIIIFGQETGVFDQSIDVEKASKTMRSIVDGLLIQWLM 172 ++ + + + + E + + +A+ MR + GL+ WL Sbjct: 125 VVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLF 180
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 29.0 bits (65), Expect = 0.025 Identities = 15/51 (29%), Positives = 21/51 (41%) Query: 153 KVLVTGATGGVGSFAVSFLNSLGYQVEASTGKESEYDYLRKLGASTIISRD 203 K LVTGA G +G L G+QV YD K ++++ Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQP 52
>PF01540#Adhesin lipoprotein Length = 475 Score = 30.5 bits (68), Expect = 0.007 Identities = 32/147 (21%), Positives = 59/147 (40%), Gaps = 11/147 (7%) Query: 10 IIDQHDELLDTWTAKLKEVGNQEDYQLTNHICENICKDYIDILLLSTKNDE---ATEEQI 66 I+ + +E+ W+ +L E+ ++D +L + I + ++L LS K I Sbjct: 212 IVSEWEEVKKAWSKELAEIKAEDDKKLAEE-NQKIKEGAKELLKLSEKIQSFADTIALTI 270 Query: 67 SELALRAVQLGLSLKLLSATLSEFWKLLYETMVDLN---MADQDRADLILEIDSFFNPIN 123 ++L R Q+ K L +LL + V++ + + D +L F N Sbjct: 271 TKLE-RKFQIDEKFK---KQLISTIELLNKKSVEVKTFATVNTIKKDFLLSELESFKEFN 326 Query: 124 TEILNQYSISWEKTVTLQKIALQELSA 150 T L + WE+ L E+ A Sbjct: 327 TSWLEKIVSEWEEVKKAWSKELAEIKA 353
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 418 bits (1076), Expect = e-148 Identities = 118/367 (32%), Positives = 183/367 (49%), Gaps = 17/367 (4%) Query: 8 RETWAEINLSAIKENVTHMKKHIGENVHLMAVVKANAYGHGDLEAGKAALEAGASCLAVA 67 R A ++L A+K+N++ + + + + +VVKANAYGHG A A+ Sbjct: 3 RPIQASLDLQALKQNLS-IVRQAATHARVWSVVKANAYGHGIERIWSAIGATD--GFALL 59 Query: 68 ILDEAISLRKRGITAPILVL-GAVPPEYVQAAAEYDVTLTGYSVEWLQEAARHLGSATVP 126 L+EAI+LR+RG PIL+L G + ++ ++ +T +S L+ A + Sbjct: 60 NLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNARLKAPLD 119 Query: 127 FHLKVDTGMNRLGVKTEEEIQSVLKILGQNPGLVCKGVFTHFATADEKNRDYFLFQFDRF 186 +LKV++GMNRLG + + + +V + L + + +HFA A+ D R Sbjct: 120 IYLKVNSGMNRLGFQPDR-VLTVWQQLRAMANVGEMTLMSHFAEAEHP--DGISGAMARI 176 Query: 187 KKLIAPLPLKELMVHCANSAAGLRLKKGFFNAVRFGISMYGLRPSADIQSEIPFQLKPAF 246 ++ L + +NSAA L + F+ VR GI +YG PS + L+P Sbjct: 177 EQAAEGLECR---RSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVM 233 Query: 247 ALHSVLSHVKKIRKGESVSYGATYTAEKDQWIGTVPIGYADGWLRKLS-GTSVLIGGKRM 305 L S + V+ ++ GE V YG YTA +Q IG V GYADG+ R GT VL+ G R Sbjct: 234 TLSSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHAPTGTPVLVDGVRT 293 Query: 306 NIAGRICMDQLMVEL--DQSYPPGTKVTLIGSQKEETITMDEIAGRLGTINYEVPCTISS 363 G + MD L V+L GT V L G + I +D++A GT+ YE+ C ++ Sbjct: 294 MTVGTVSMDMLAVDLTPCPQAGIGTPVELWG----KEIKIDDVAAAAGTVGYELMCALAL 349 Query: 364 RVPRMFL 370 RVP + + Sbjct: 350 RVPVVTV 356
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 131 bits (330), Expect = 2e-35 Identities = 94/423 (22%), Positives = 187/423 (44%), Gaps = 14/423 (3%) Query: 1 MNKSIKTAPYNRSVIVGILLAGAFVAILNQTLLITALPHIMNDFNIDANKAQWLTTSFML 60 MN S + + I+ L +F ++LN+ +L +LP I NDFN W+ T+FML Sbjct: 1 MNTSYSQSNLRHNQILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFML 60 Query: 61 TNGILIPITAFLIEKFTSRTLLISAMSIFTAGTIVGAFAPN-FPVLLTARIIQAAGAGIM 119 T I + L ++ + LL+ + I G+++G + F +L+ AR IQ AGA Sbjct: 61 TFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAF 120 Query: 120 LPLMQTVFLTIFPMEKRGRAMGMVGLVISFAPAIGPTLSGWAVEAFSWRSLFYIIFPIAV 179 L+ V P E RG+A G++G +++ +GP + G W L +I I + Sbjct: 121 PALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLL-LIPMITI 179 Query: 180 IDLLLAIILMKNVTTLRETQIDILSVILSTLGFGGLLYGFSSAGSSGWTSAEVLTSLLVG 239 I + + L+K ++ DI +IL ++G + +S ++ L+V Sbjct: 180 ITVPFLMKLLKKEVRIKGH-FDIKGIILMSVGIVFFMLFTTSY---------SISFLIVS 229 Query: 240 AVALIFFIARQMKLKKPMLEFRVFSFGIFSLTTLLGTLVFALLIGTETILPLYTQKVRGV 299 ++ + F+ K+ P ++ + F + L G ++F + G +++P + V + Sbjct: 230 VLSFLIFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQL 289 Query: 300 SAFDTG-LMLLPGAIVMGMMSPFIGRVFDKIGGKGLAMTGFFIILLTSLPFMNLTDSTSL 358 S + G +++ PG + + + G + D+ G + L S + T+ Sbjct: 290 STAEIGSVIIFPGTMSVIIFGYIGGILVDRRGPL-YVLNIGVTFLSVSFLTASFLLETTS 348 Query: 359 IWIVVVYTARLLGTAMIMMPVTTAGINALPRHLIPHGTAMNNTVRQVGGSIGTALLVSVM 418 ++ ++ L G + ++T ++L + G ++ N + G A++ ++ Sbjct: 349 WFMTIIIVFVLGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLL 408 Query: 419 SSQ 421 S Sbjct: 409 SIP 411
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.9 bits (64), Expect = 0.021 Identities = 14/41 (34%), Positives = 18/41 (43%) Query: 24 IKSGEVTAIIGPSGSGKSTLLRCLNLLERPDDGIIEIGDAK 64 K + G G GKSTL+ L L+ D +IG K Sbjct: 593 CKFDYSVVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTGK 633
>ENTSNTHTASED#Enterobactin synthetase component D signature. Length = 234 Score = 29.2 bits (65), Expect = 0.010 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 9/56 (16%) Query: 67 RFSTQEYGKPCIPDL--------PDTHF-NISHSGHWIVCAFDSQPIGIDIEKTKP 113 + +E G +P + PD F +ISH + Q IGIDIEK Sbjct: 58 VHALREVGVRTVPGMGDKRQPLWPDGLFGSISHCATTALAVISRQRIGIDIEKIMS 113
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 32.5 bits (74), Expect = 0.003 Identities = 37/159 (23%), Positives = 66/159 (41%), Gaps = 5/159 (3%) Query: 32 FMLPMADTFHADRSLISVSVSVFMITTGIVQ-FFVGFFIDRFSVRKMMALGAVCISASCL 90 +++ D FH D + I +S++ F I + Q G R R+ + LG + + Sbjct: 233 WVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYI 292 Query: 91 VLPYSPNVHVFSAIYGVL--GGIGYSCAVGVTTQYFISRWFETHKGLALAILTNANSAGL 148 +L ++ + I +L GGIG + ++ +G A+ + + G Sbjct: 293 LLAFATRGWMAFPIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGP 352 Query: 149 LLLSPIWAAAPYHAGWQNTYMILGIVMAALLLPLLAFGM 187 LL + I+AA+ W I G + L LP L G+ Sbjct: 353 LLFTAIYAAS--ITTWNGWAWIAGAALYLLCLPALRRGL 389
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 48.3 bits (115), Expect = 3e-08 Identities = 34/152 (22%), Positives = 66/152 (43%), Gaps = 2/152 (1%) Query: 39 ISQDFGLSSFEKGFVVALPILSGSVFRIILGVLTDRIGPKKTAVIGMLITMIPLLWGAFG 98 I+ DF +V +L+ S+ + G L+D++G K+ + G++I + G G Sbjct: 40 IANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVG 99 Query: 99 GRSLTELYAIGILLGVAGASF-AVALPMASRWYPPHLQGLAMG-IAGAGNSGTLFATLFG 156 + L + G A+F A+ + + +R+ P +G A G I G G Sbjct: 100 HSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIG 159 Query: 157 PRLAEQFGWHSVMGIALLPLMIVFILFIVMAK 188 +A W ++ I ++ ++ V L ++ K Sbjct: 160 GMIAHYIHWSYLLLIPMITIITVPFLMKLLKK 191 Score = 36.4 bits (84), Expect = 2e-04 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 1/77 (1%) Query: 44 GLSSFEKGFVVALPI-LSGSVFRIILGVLTDRIGPKKTAVIGMLITMIPLLWGAFGGRSL 102 LS+ E G V+ P +S +F I G+L DR GP IG+ + L +F + Sbjct: 288 QLSTAEIGSVIIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETT 347 Query: 103 TELYAIGILLGVAGASF 119 + I I+ + G SF Sbjct: 348 SWFMTIIIVFVLGGLSF 364
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 62.5 bits (152), Expect = 8e-13 Identities = 79/403 (19%), Positives = 147/403 (36%), Gaps = 39/403 (9%) Query: 25 LVLLFFITAINYIDRASVSIVGPSIQRSLNLS---PALLGIVFSAFSWTYTGMQIPGGLI 81 L+++ A++ + + V P + R L S A GI+ + ++ G + Sbjct: 7 LIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGAL 66 Query: 82 LDKFGSKRTYGISLFVWSVFTGVQAFATSFGFLFGCRLLIGIAESPAFPANNRIVTTWFP 141 D+FG + +SL +V + A A L+ R++ GI + + Sbjct: 67 SDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGAT-GAVAGAYIADITD 125 Query: 142 RRERAFATGVYTAGEYVGLAFATPVLFWVLTAFDWRAVFISSGVLGI---IFSIFWFKMY 198 ERA G +A G+ A PVL ++ F A F ++ L + F Sbjct: 126 GDERARHFGFMSACFGFGMV-AGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPES 184 Query: 199 HEPNGYRKVNREELDYIKEGGGLTEVSDSAGGISWADFVQLLKYRKLVGLYIGQFAVAST 258 H+ R + RE L+ + WA + ++ L F + Sbjct: 185 HKGER-RPLRREALNPLA-------------SFRWARGMTVVA-----ALMAVFFIMQLV 225 Query: 259 LFFFLTWFPTYLAEAKHMAFLKVGFAASIPYIAAFFGVLFGGFWSDGMMKRGVSVNVARK 318 + + + H +G + + L + + R + + Sbjct: 226 GQVPAALWVIFGEDRFHWDATTIGISLAA---FGILHSLAQAMITGPVAAR-----LGER 277 Query: 319 TPVILGLLL--TGSIVLANVTDSAPAVLTILSIASFAQGMSNISWTMLSEVAPSETIGLA 376 ++LG++ TG I+LA T A ++ +AS GM + MLS E G Sbjct: 278 RALMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIGMPALQ-AMLSRQVDEERQGQL 336 Query: 377 GGVFSFFANMAGIITPLIIGFIVSAT-GSYNGAILFVGAVAFI 418 G + ++ I+ PL+ I +A+ ++NG GA ++ Sbjct: 337 QGSLAALTSLTSIVGPLLFTAIYAASITTWNGWAWIAGAALYL 379
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 144 bits (364), Expect = 5e-40 Identities = 95/406 (23%), Positives = 167/406 (41%), Gaps = 16/406 (3%) Query: 14 VVIGLLLGILMSAMDNTIVATAMGNIVADLG-SFDKFAWVTASYMVAVMAGMPIYGKLSD 72 ++I L + S ++ ++ ++ +I D WV ++M+ G +YGKLSD Sbjct: 15 ILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSD 74 Query: 73 MYGRKRFFLFGLILFLIGSALCGIAQTMDQLIIY-RVIQGIGGGALMPIAFTIIFDLFPP 131 G KR LFG+I+ GS + + + L+I R IQG G A + ++ P Sbjct: 75 QLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPK 134 Query: 132 EKRGKMSGMFGAVFGLSSVLGPLLGALITDSISWHWVFYINVPIGILSLFFILRYYKESL 191 E RGK G+ G++ + +GP +G +I I HW + + +P+ + L + Sbjct: 135 ENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYI--HWSYLLLIPMITIITVPFLMKLLKKE 192 Query: 192 EHKKQKIDWAGAITLVVSIVGLMFALELGGKTYDWNSVQIIGLFAVFAVFFIAFFIVERK 251 K D G I + V IV M L +Y V + F+ F RK Sbjct: 193 VRIKGHFDIKGIILMSVGIVFFM----LFTTSYSI------SFLIVSVLSFLIFVKHIRK 242 Query: 252 AEEPIISFWMFKNRLFATAQILAFLYGATFVILAVFIPIFVQAVYG-STATSAGFILTPM 310 +P + + KN F + + T +P ++ V+ STA I+ P Sbjct: 243 VTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPG 302 Query: 311 MIGSVIGSMIGGIFQTKVRFRTLMLISVVAFFIGMLLLSNMTPDTARTMLTVFMLISGFG 370 + +I IGGI + ++ I V + L S +T +T+ ++ G Sbjct: 303 TMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTAS-FLLETTSWFMTIIIVFVLGG 361 Query: 371 VGFNFSLLPAASMNDLEPRYRGSANSTNSFLRSFGMTLGVTIFGTI 416 + F +++ + L+ + G+ S +F G+ I G + Sbjct: 362 LSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGL 407
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 25.3 bits (55), Expect = 0.031 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 9/51 (17%) Query: 27 KKVYIMPLVSIAVSVILMFTVFNLSFWGWVVVYGLVSLVLSSITNSIRKKI 77 K + MP+ +FTVF L F +V+Y +VS +++ I + + Sbjct: 493 KIMTFMPV---------IFTVFFLWFPSGLVLYYIVSNLVTIIQQQLIYRG 534
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 30.7 bits (69), Expect = 0.008 Identities = 24/121 (19%), Positives = 44/121 (36%), Gaps = 1/121 (0%) Query: 213 QENHTYDRLLSTPVSYTAYAISKFAAAYLFGLLHIIVILAAGTFMLHIRFADHVFAAGAV 272 + T++ +L T + + + A A L I + + ++ + A V Sbjct: 95 EGQRTWEAMLYTQLRLGDIVLGEMAWAATKAALAGAGIGVVAAALGYTQW-LSLLYALPV 153 Query: 273 LAACSFALTAVTMAVIPFMKSQKQFTSLASVFIAVTGLLGGAFFTLDAAPEYMRMLSLFT 332 +A A ++ M V S F ++ I L GA F +D P + + F Sbjct: 154 IALTGLAFASLGMVVTALAPSYDYFIFYQTLVITPILFLSGAVFPVDQLPIVFQTAARFL 213 Query: 333 P 333 P Sbjct: 214 P 214
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 31.8 bits (72), Expect = 0.003 Identities = 29/150 (19%), Positives = 56/150 (37%), Gaps = 3/150 (2%) Query: 206 AMVVMFSIMTA--FALIHGIVEE-RQQHTLFRIKSMPVLRIQYVAGKLLGIMLAILMQMA 262 A +V S MTA F I+ Q T + + V G++ + A Sbjct: 71 AGMVATSAMTAATFETIYAAFGRMEGQRTWEAMLYTQLRLGDIVLGEMAWAATKAALAGA 130 Query: 263 AVIIASSILYQVKWGNLFEILLVTIVYSFAIGSIVLLWGFTAKNHETVSSMAAPILYGFS 322 + + ++ L +W +L L V + A S+ ++ A +++ ++ Sbjct: 131 GIGVVAAALGYTQWLSLLYALPVIALTGLAFASLGMVVTALAPSYDYFIFYQTLVITPIL 190 Query: 323 FLGGSFIAKDGLPDSLKIVQELIPNGKAIN 352 FL G+ D LP + +P +I+ Sbjct: 191 FLSGAVFPVDQLPIVFQTAARFLPLSHSID 220
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 83.0 bits (205), Expect = 1e-20 Identities = 24/113 (21%), Positives = 51/113 (45%), Gaps = 2/113 (1%) Query: 3 VMIADDQSIVREGLKMILSLHEGIQISGEASCGEEVLRLLSQTETDVILMDIRMPGMDGI 62 +++ADD + +R L LS G + ++ + R ++ + D+++ D+ MP + Sbjct: 6 ILVADDDAAIRTVLNQALSR-AGYDVRITSN-AATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 63 ETTKAVKARYPSVKVIILTTFEDDHYIFAGLKSGADGYLLKDADSDEMIASLQ 115 + +K P + V++++ + GA YL K D E+I + Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116
>PF07132#Harpin protein (HrpN) Length = 356 Score = 29.7 bits (66), Expect = 0.001 Identities = 13/44 (29%), Positives = 22/44 (50%) Query: 20 KAVIERFNNVLTSNGAEITGTKDWGKRRLAYEINDFRDGFYQIL 63 KA ++ NN+ T N + D R++A EI F D + ++ Sbjct: 222 KAGLQELNNISTHNDSPTRYFVDKEDRKMAKEIGQFMDQYPEVF 265
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 29.2 bits (65), Expect = 0.008 Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 1/81 (1%) Query: 92 VTEVQAESVQFLEPKNSGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQ-GNS 150 +T ++ E++Q+ G SGS +NE N G ++GG N+ N RN + Sbjct: 218 ITYLKGEAMQYDLSTTGGNSGSPVFNEKNEVIGIHWGGVPNEFNGAVFINENVRNFLKQN 277 Query: 151 FNDDPFANDGKPIDISDDDLP 171 D FAND +P + + D P Sbjct: 278 IEDIHFANDDQPNNPDNPDNP 298
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 126 bits (317), Expect = 2e-37 Identities = 76/260 (29%), Positives = 124/260 (47%), Gaps = 6/260 (2%) Query: 2 SKLLESKVALVTGAASGIGLEIAREFAKEGAKVVISDLNEKAVQHAAEELTEQGYEVLSA 61 +K +E K+A +TGAA GIG +AR A +GA + D N + ++ L + + Sbjct: 3 AKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAF 62 Query: 62 VCDVTNEEQVEKSVSKTLETFGRLDILVNNAGIQHVSDIENFPTDKFEFMLKLMLTAPFS 121 DV + +++ ++ G +DILVN AG+ I + +++E + T F+ Sbjct: 63 PADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFN 122 Query: 122 ATKRVFPLMKKQKFGRIINMASINGLIGFAGKAAYCSAKHGLIGLTKVSALEGAEYGITV 181 A++ V M ++ G I+ + S + AAY S+K + TK LE AEY I Sbjct: 123 ASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRC 182 Query: 182 NALCPGYIDTPLVQNQL--KDIAETRGISKEKVFEEVIYPLVPQKRLLAVQEIADYAVFL 239 N + PG +T + Q L + + I K E +P K+L +IAD +FL Sbjct: 183 NIVSPGSTETDM-QWSLWADENGAEQVI---KGSLETFKTGIPLKKLAKPSDIADAVLFL 238 Query: 240 ASDKAKGVTGQAVVMDGGYT 259 S +A +T + +DGG T Sbjct: 239 VSGQAGHITMHNLCVDGGAT 258
>PF06580#Sensor histidine kinase Length = 349 Score = 33.3 bits (76), Expect = 0.002 Identities = 19/103 (18%), Positives = 35/103 (33%), Gaps = 26/103 (25%) Query: 377 NAVQH---TDEDTGVITVSLQKDGG-IMLMIADNGTGIAPEHVPHLFDRFYRAETSRSRQ 432 N ++H G I + KD G + L + + G+ Sbjct: 266 NGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKN------------------T 307 Query: 433 SGGAGLGLAITKTIIDSHNG---TIEVKSEQGKGSVFIIRLPG 472 G GL + + G I++ +QGK + ++ +PG Sbjct: 308 KESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNA-MVLIPG 349
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 61.8 bits (150), Expect = 1e-12 Identities = 61/330 (18%), Positives = 118/330 (35%), Gaps = 25/330 (7%) Query: 38 GILQSVLNLAMFLAEVPSGVISDRIGRKKSLLLGHFMVIIYLVMFLSFHNFIALFIAHII 97 GIL ++ L F G +SDR GR+ LL+ + + + L+I I+ Sbjct: 46 GILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIV 105 Query: 98 YGI-GLTFISGTDHAFLFDSLKEQGKEKWYGKSIGNYNGLVILGLAIAMGIGGYLQEISW 156 GI G T A++ D + + +G + G+ +GG + S Sbjct: 106 AGITGATGAVAG--AYIADITDGDERARHFGFMSACFG----FGMVAGPVLGGLMGGFSP 159 Query: 157 SYVFIAGIVTQLIAMAVITQLTEIKFENSEHETQTVGDILKEVKDF--FRLNKAFKYLVL 214 F A A+ + LT H+ + + + FR + + Sbjct: 160 HAPFFAA-----AALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAA 214 Query: 215 SLSVFFAI-------TSVFYMYGQDLLSQEGLSVRNISIIFAGLSILQALCSIFSSKP-A 266 ++VFF + +++ ++G+D I I A IL +L + P A Sbjct: 215 LMAVFFIMQLVGQVPAALWVIFGEDRF---HWDATTIGISLAAFGILHSLAQAMITGPVA 271 Query: 267 EKFTPRRVLLLTFCIIGAAYLFIPSGSLYVTIAAFVVINALYDVIEPVSSQVVNNEIPSR 326 + RR L+L G Y+ + + +V+ A + P +++ ++ Sbjct: 272 ARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIGMPALQAMLSRQVDEE 331 Query: 327 TRATLLSIISLMTSLFMFIAFPFIGFLTDY 356 + L ++ +TSL + + Sbjct: 332 RQGQLQGSLAALTSLTSIVGPLLFTAIYAA 361
>PF05272#Virulence-associated E family protein Length = 892 Score = 32.4 bits (73), Expect = 0.006 Identities = 11/32 (34%), Positives = 17/32 (53%) Query: 363 IVGRNGVGKTTLIRCIIGERELSDGTIKVGEN 394 + G G+GK+TLI ++G SD +G Sbjct: 601 LEGTGGIGKSTLINTLVGLDFFSDTHFDIGTG 632
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 389 bits (1002), Expect = e-134 Identities = 116/369 (31%), Positives = 187/369 (50%), Gaps = 26/369 (7%) Query: 114 EIAKDVTKLERLIRENMHRKEQNSYTFDSILGNSSVIREVIENAKRATRTSSSVLLAGET 173 E+ + + + + E +S ++G S+ ++E+ R +T ++++ GE+ Sbjct: 110 ELIGIIGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGES 169 Query: 174 GTGKELFAQSIHNGSQRSGAPFISQNCAALPDSLVESILFGTKKGAFTGAI-DQPGLFEQ 232 GTGKEL A+++H+ +R PF++ N AA+P L+ES LFG +KGAFTGA G FEQ Sbjct: 170 GTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQ 229 Query: 233 AQGGTLLLDEINSLNLSLQAKLLRALQEKKIRRIGSAQDKPIDVRIIATMNEDPITAISE 292 A+GGTL LDEI + + Q +LLR LQ+ + +G DVRI+A N+D +I++ Sbjct: 230 AEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQ 289 Query: 293 ERLRKDLYYRLSVVTLIIPPLRERKEDILPLAEVFIQKNNHLFQMHVDSISDDVQRFFLE 352 R+DLYYRL+VV L +PPLR+R EDI L F+Q+ + V + Sbjct: 290 GLFREDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKE-GLDVKRFDQEALELMKA 348 Query: 353 YDWPGNIRELEHMIEGAMNFMTDETTITAAHLPYQYRMKIKPADTETKAAASTQ------ 406 + WPGN+RELE+++ + + IT + + R +I + E AA S Sbjct: 349 HPWPGNVRELENLVRRLT-ALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQA 407 Query: 407 -----------------PGTDLKDKMENFEKYMIEKILRKHGNNISKTANELGISRQSLQ 449 P + E +I L N K A+ LG++R +L+ Sbjct: 408 VEENMRQYFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLR 467 Query: 450 YRLKKFGLD 458 ++++ G+ Sbjct: 468 KKIRELGVS 476
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 31.1 bits (70), Expect = 4e-04 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 7/51 (13%) Query: 1 MNKAFKALADPTRRRILD----LLKKQDM---TAGEIAEHFDMSKPSISHH 44 M + K A TR+ ILD L +Q + + GEIA+ +++ +I H Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWH 51
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 34.3 bits (79), Expect = 8e-04 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 8/52 (15%) Query: 358 TVNAAYAIGKGEEAGQIKAGRAADIVIWEALNYMYIPYHYGVNHVRRVIKNG 409 T+N A A G E G ++ G+ AD+V+W P +GV V+ G Sbjct: 410 TINPAIAHGLSHEIGSLEVGKRADLVLWN-------PAFFGVK-PDMVLLGG 453 Score = 32.0 bits (73), Expect = 0.004 Identities = 30/110 (27%), Positives = 44/110 (40%), Gaps = 20/110 (18%) Query: 38 AVIGIHDGRIVF---AGYKGAEEGYE-----ARDIIDCGGRLVTPGLVDPHTHLVFGGSR 89 A IG+ DGRI AG + G ++I G++VT G +D H H + Sbjct: 86 ADIGLKDGRIAAIGKAGNPDMQPGVTIIVGPGTEVIAGEGKIVTAGGMDSHIHFICPQQI 145 Query: 90 EKELNLKIQGMSYLDILAQGGGILSTVKDTKAASEEELIEKGLFHLGRML 139 E+ L + M GGG T A + G +H+ RM+ Sbjct: 146 EEALMSGLTCML-------GGGT-GPAHGTLATT----CTPGPWHIARMI 183
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 178 bits (454), Expect = 1e-55 Identities = 84/350 (24%), Positives = 152/350 (43%), Gaps = 46/350 (13%) Query: 1 MAILVTGGAGYIGSHTCVELLNGGYDIVVLDNLSNSSPEALE--RVKDITGKGLVFYEAD 58 M LVTG AG+IG H LL G+ +V +DNL++ +L+ R++ + G F++ D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 59 LLDRDAVHRVFAENEIEAVIHFAGLKAVGESVAVPLRYYHNNLTGTFILCEAMQAHGVKK 118 L DR+ + +FA E V AV S+ P Y +NLTG + E + + ++ Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 119 IVFSSSATVYGVPETTPITE----DFPLSATNPYGQTKLMLEQILRDLHKADSEWSIAL- 173 ++++SS++VYG+ P + D P+S Y TK E + H + + Sbjct: 121 LLYASSSSVYGLNRKMPFSTDDSVDHPVS---LYAATKKANELM---AHTYSHLYGLPAT 174 Query: 174 -LRYFNPFGAHPSGRIGEDPNGIPNNLMPYVAQVAVGKLEQLQVFGNDYPTKDGTGVRDY 232 LR+F +G P GR P ++ + A+ + + + V+ G RD+ Sbjct: 175 GLRFFTVYG--PWGR----P-----DMALFKFTKAMLEGKSIDVYN------YGKMKRDF 217 Query: 233 IHVVDLAEGHVRALEKVLNTTGADA---------------YNLGTGRGYSVLEMVKAFEK 277 ++ D+AE +R + + + YN+G +++ ++A E Sbjct: 218 TYIDDIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALED 277 Query: 278 VSGKEVPYRFAARRPGDIAACFADPAKAKVELGWEAKRGLEEMCADSWKW 327 G E +PGD+ AD +G+ + +++ + W Sbjct: 278 ALGIEAKKNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNW 327
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 30.6 bits (69), Expect = 0.009 Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 4/52 (7%) Query: 229 QKEPELKHTIQTFIEHNSNMSLTSKRLHLHRNSLQYRIDKFAERSGIDIKTY 280 E E + N + L L+RN+L+ +I + G+ + Sbjct: 433 LAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIREL----GVSVYRS 480
>PF05272#Virulence-associated E family protein Length = 892 Score = 34.3 bits (78), Expect = 9e-04 Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 9/56 (16%) Query: 33 IVFVGPSGCGKSTTLRMVAGLEDITKGDFYIGDTRVNDIAPKDRDIAMVFQNYALY 88 +V G G GKST + + GL+ + DT + +D Y Sbjct: 599 VVLEGTGGIGKSTLINTLVGLD-------FFSDTHFDI--GTGKDSYEQIAGIVAY 645
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 63.0 bits (153), Expect = 1e-13 Identities = 51/258 (19%), Positives = 99/258 (38%), Gaps = 35/258 (13%) Query: 26 KIASMSIHLTNDLLALGVTPAG--SVVGGELKDFLPHVKNQLKDTKKLGPASDPDMEALL 83 +I ++ LLALG+ P G + L P + + + D +G ++P++E L Sbjct: 37 RIVALEWLPVELLLALGIVPYGVADTINYRLWVSEPPLPDSVID---VGLRTEPNLELLT 93 Query: 84 ELNPDNIYLDKEFAGKDVSKYKKIGNTHVFDLDKGT-----WRDHLKDIGKIVNREKEAK 138 E+ P + G +I F+ G R L ++ ++N + A+ Sbjct: 94 EMKPS-FMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNLQSAAE 152 Query: 139 TFIQDYEDETKQVRSMMNKELGKNAK--VMAIRVNAKELRVFSTRRPMGPILFDDLKLKP 196 T + YED +RSM + + + A+ ++ ++ + + VF LF + + Sbjct: 153 THLAQYED---FIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGP-----NSLFQE--ILD 202 Query: 197 ADGIKEMNTSRP----YEVISQEVLPDY-NADAI-FVVVNRDDKSQQAYKELQKSAVWKG 250 GI +S + L Y + D + F N D L + +W+ Sbjct: 203 EYGIPNAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDA-----LMATPLWQA 257 Query: 251 LKAVKANHVYKIADQPWL 268 + V+A ++ W Sbjct: 258 MPFVRAGRFQRVPAV-WF 274
>PF05043#Transcriptional activator Length = 493 Score = 43.0 bits (101), Expect = 3e-06 Identities = 35/233 (15%), Positives = 85/233 (36%), Gaps = 32/233 (13%) Query: 8 ELLRLLLAAETPVTSSVIAANVKVTTRTVRNDIKELQTIVEKHGASIQSVRGSGYKLLIR 67 ELL LL + S +A + T R V++D+ +++ + + +I Sbjct: 14 ELLELLFEHKRWFHRSELAELLNCTERAVKDDLSHVKSAF----PDLIFHSSTNGIRIIN 69 Query: 68 NEQPFKNWLQDNFQQNSTVPIFPDERIDYLMKRMLLADGYLKLDDLAEELFISKSTLQSD 127 + + +F ++ST + + + + + + + +E +IS S+L Sbjct: 70 TDDSDIEMVYHHFFKHSTH---------FSILEFIFFNEGCQAESICKEFYISSSSLYRI 120 Query: 128 LKEVKKRLR-PYDIILETRPNYGFKLRGEELRLRYCMAEYLVDDREPEPDLLSEKAGI-- 184 + ++ K ++ + + P ++ G E +RY A+Y SEK Sbjct: 121 ISQINKVIKRQFQFEVSLTPV---QIIGNERDIRYFFAQY-----------FSEKYYFLE 166 Query: 185 --LPKDDIHVIRTAIMKQVRNHKIPLSFFGLNNLIIHIAIACKRIRTENYVSL 235 + + + P++ L + + RI+ +++ + Sbjct: 167 WPFENFSSEPLSQLLELVYKETSFPMNLSTHRMLKLLLVTNLYRIKFGHFMEV 219
>LIPPROTEIN48#Mycoplasma P48 major surface lipoprotein signature. Length = 428 Score = 28.4 bits (63), Expect = 0.023 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 9/70 (12%) Query: 139 EIPVYLTNRVEYVKAEIQIRTIAMDFWASLEHKIYYKLNNEVPKHLTDELKEAAEIAHYL 198 I Y+ E ++ QI+ I +DF E+K +Y L + KE+A Y Sbjct: 131 SIKQYIDAHREELE-RNQIKIIGIDFDIETEYKWFYSLQFNI--------KESAFTTGYA 181 Query: 199 DEKMLGIKKE 208 L + E Sbjct: 182 IASWLSEQDE 191
>SUBTILISIN#Subtilisin serine protease family (S8) signature. Length = 326 Score = 252 bits (646), Expect = 1e-81 Identities = 101/288 (35%), Positives = 143/288 (49%), Gaps = 19/288 (6%) Query: 105 QSSSYALPQWDIEPTQVKQAWKEGLTGKKVKVAVIDSGIYP-HDDLS--IAGGYSAV--- 158 Q +E Q W + G+ VKVAV+D+G H DL I GG + Sbjct: 15 QEQQVNEIPRGVEMIQAPAVWNQT-RGRGVKVAVLDTGCDADHPDLKARIIGGRNFTDDD 73 Query: 159 -SYTSSYKDDNGHGTHVAGIIAAKHDGYGIDGIAPNVRLYAVKALDRKGAGDLKSLLKAI 217 +KD NGHGTHVAG IAA + G+ G+AP L +K L+++G+G +++ I Sbjct: 74 EGDPEIFKDYNGHGTHVAGTIAATENENGVVGVAPEADLLIIKVLNKQGSGQYDWIIQGI 133 Query: 218 DWSIANKMDIINMSLGTNADSKILHDAVDKAYKKGIVIVAAAGNDG----NKKPVNYPGA 273 ++I K+DII+MSLG D LH+AV KA I+++ AAGN+G + YPG Sbjct: 134 YYAIEQKVDIISMSLGGPEDVPELHEAVKKAVASQILVMCAAGNEGDGDDRTDELGYPGC 193 Query: 274 YSSVTAVSASTEKNGLAAFSTTGKQIEFAAPGTNITSTYLNQMYATADGTSQAAPHVTGM 333 Y+ V +V A + FS + +++ APG +I ST YAT GTS A PHV G Sbjct: 194 YNEVISVGAINFDRHASEFSNSNNEVDLVAPGEDILSTVPGGKYATFSGTSMATPHVAGA 253 Query: 334 FALLRQKYPEE-----TNTQLRQQMQQNVKDLGAPGRDSRFGYGLVQY 376 AL++Q T +L Q+ + LG G GL+ Sbjct: 254 LALIKQLANASFERDLTEPELYAQLIKRTIPLG--NSPKMEGNGLLYL 299
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 32.6 bits (74), Expect = 2e-04 Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 2/65 (3%) Query: 49 SRHGEIKLMKTSPHHVRKGVANRILRHMLEEARRRGYQRISLETGSMEAFLPARRLYEKA 108 + + I+ + + + +KGV +L +E A+ + + LET + + A Y K Sbjct: 87 NGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDIN--ISACHFYAKH 144 Query: 109 GFQYC 113 F Sbjct: 145 HFIIG 149
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 28.7 bits (64), Expect = 0.021 Identities = 25/146 (17%), Positives = 50/146 (34%), Gaps = 5/146 (3%) Query: 38 HLEKGKTESEAMELILREVGTPSEIISAFQKASAVPARTF--MLFYLFCNCGLFVMGAM- 94 +E EA E + ++ I+ A +P F ++ + ++ AM Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 95 ITMMHAWRIHPAVDALWKGISVSVWLIMIGYVLYWFQIGYQAGKE-FGAGGKKLAERTVW 153 ++++ A + PA+ A + G WF + + K+ T Sbjct: 480 LSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539 Query: 154 ASMVPNLCFMF-VFLFNLVPAGLFPS 178 ++ L V LF +P+ P Sbjct: 540 YLLIYALIVAGMVVLFLRLPSSFLPE 565
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 37.2 bits (86), Expect = 3e-05 Identities = 23/117 (19%), Positives = 44/117 (37%), Gaps = 8/117 (6%) Query: 156 FTKSRYYQDPHL-SYESANRLFEEWARNNAEGRASLQFAATYKGETVGFVQGLSKGDEF- 213 +T+ R+ P+ YE + A L + + +G ++ S + + Sbjct: 37 YTEERF-SKPYFKQYEDDDMDVSY--VEEEGKAAFLYYL---ENNCIGRIKIRSNWNGYA 90 Query: 214 VLDLMAVKPGFEGKGAGFHLAAHVIEQSLRFQHKTVSAGTQLHNVRAIRLYERMGFK 270 +++ +AV + KG G L IE + + TQ N+ A Y + F Sbjct: 91 LIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFI 147
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 166 bits (421), Expect = 4e-51 Identities = 77/332 (23%), Positives = 145/332 (43%), Gaps = 26/332 (7%) Query: 4 SYLITGGAGFIGLTFTKMMLKETDAQITVLDNLT--Y--ASRPLEIEALKKNGRFRFIKG 59 YL+TG AGFIG +K +L+ Q+ +DNL Y + + +E L + G F+F K Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGH-QVVGIDNLNDYYDVSLKQARLELLAQPG-FQFHKI 59 Query: 60 DISKKEDIDKVF-SQMYDAVIHFAAESHVDRSINQAEPFITTNVMGTYRLADAVLQGKAG 118 D++ +E + +F S ++ V V S+ + +N+ G + + K Sbjct: 60 DLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQ 119 Query: 119 RLIHISTDEVYGDLAPDDPAFTETTPLSPNNPYSASKASSDLLVMSYVRTHKLPAIITRC 178 L++ S+ VYG L P T+ + P + Y+A+K +++L+ +Y + LPA R Sbjct: 120 HLLYASSSSVYG-LNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRF 178 Query: 179 SNNYGPYQHHEKMIPTIIRHAVNGTPVPLYGDGMQIRDWLFAEDHCRAIKLVLEKGTLGD 238 YGP+ + + + + G + +Y G RD+ + +D AI + + D Sbjct: 179 FTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPHAD 238 Query: 239 ------------------IYNIGGGNERTNKELASFIMKELGVEERFTHVEDRKGHDRRY 280 +YNIG + + + LG+E + + + G Sbjct: 239 TQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLPLQPGDVLET 298 Query: 281 AINASKLKNELGWRQDVTFEEGMRRTIRWYTD 312 + + L +G+ + T ++G++ + WY D Sbjct: 299 SADTKALYEVIGFTPETTVKDGVKNFVNWYRD 330
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 69.4 bits (170), Expect = 1e-15 Identities = 56/239 (23%), Positives = 93/239 (38%), Gaps = 44/239 (18%) Query: 3 KVLVTGAAGQLGRELCRQLKQEGYEVIAL------------------------TKAMMNI 38 K LVTGAAG +G + ++L + G++V+ + +++ Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 39 SDQRSVRHSFSHYKPDIVVNTAAYTSVDKCETELDKAYLINGIGAYYAALEA--ENTGAK 96 +D+ + F+ + V + +V + E AY + + + LE N Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAV-RYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 97 FIHISTDYVFSGKGTRPYQTDDPAD-PGTIYGKSKKLGEELI----RLTGKNHTIIRTSW 151 ++ S+ V+ P+ TDD D P ++Y +KK E + L G T +R Sbjct: 121 LLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFFT 180 Query: 152 VYGSGG------HNFVNTMLKLADTHDQVRVVNDQVGAP--TYTKDLAETVIGLFDRPP 202 VYG G F ML+ + V N TY D+AE +I L D P Sbjct: 181 VYGPWGRPDMALFKFTKAMLE----GKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIP 235
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 137 bits (347), Expect = 7e-42 Identities = 73/251 (29%), Positives = 118/251 (47%), Gaps = 6/251 (2%) Query: 6 KTVLITGGASGIGYAAVQAFLNQQANVVVADIDEAQGEAMIRKENNDRLHFVQ--TDITD 63 K ITG A GIG A + +Q A++ D + + E ++ + H D+ D Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 64 EPACQNAIRSAADKFGGLDVLINNAGIEIVAPIHEMELSDWNKVLNVNLTGMFLMSKHAL 123 A + G +D+L+N AG+ IH + +W +VN TG+F S+ Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128 Query: 124 KYMLKSGKGNIINTCSVGGVVAWPDIPAYNASKGGVLQLTRSMAVDYAKHNIRVNCVCPG 183 KYM+ G+I+ S V + AY +SK + T+ + ++ A++NIR N V PG Sbjct: 129 KYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPG 188 Query: 184 IIDTPLNEKSFLENNEGTLEEIKKEKAKVN---PLLRLGKPEEIANVMLFLASDLSSYMT 240 +T + + + N G + IK PL +L KP +IA+ +LFL S + ++T Sbjct: 189 STETDMQWSLWADEN-GAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHIT 247 Query: 241 GSAITADGGYT 251 + DGG T Sbjct: 248 MHNLCVDGGAT 258
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 30.2 bits (68), Expect = 0.016 Identities = 66/353 (18%), Positives = 112/353 (31%), Gaps = 41/353 (11%) Query: 4 LKPNS--KYLLFGQALSFMGDYCVLPAL-LILSTYYHDYWVTSGVIAVRSI----PMVFQ 56 +KPN +L AL +G ++P L +L H VT+ + ++ Sbjct: 1 MKPNRPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACA 60 Query: 57 PFLGVLVDRLDRVKIMLWTDVIRGVIFLGLTFLPKGEYPLLFLALLFVSYGSGVF--FNP 114 P LG L DR R R V+ + L + L+V Y + Sbjct: 61 PVLGALSDRFGR----------RPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITG 110 Query: 115 ARLAVMSSLEADIKNINT------LFAKATTISIIVGAAAGGLFLLGGSVEL----AVAF 164 A AV + ADI + + + ++ G GG + G S A A Sbjct: 111 ATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGG-LMGGFSPHAPFFAAAAL 169 Query: 165 NGVTYLVSAFFISRIKLQYVPIQSENVREAFQSFKEGLKEIKTNAFVLNAMFTMITMALL 224 NG+ +L F + SF+ + + A ++ F M + + Sbjct: 170 NGLNFLTGCFLLPESHKGERRPLRREALNPLASFRW-ARGMTVVAALMAVFFIMQLVGQV 228 Query: 225 WGVVYSYFPIVSRFLGDGEIGNFVLT----FCIGFGGFIGAALVSKWGFNNNKGLMYFTV 280 ++ F RF D L I + ++ G + LM + Sbjct: 229 PAALWVIFGE-DRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLG--ERRALMLGMI 285 Query: 281 LSIVSLALFLFT---PIFAVSVIAAILFFIAMEYGEVLAKVKVQENAANQIQG 330 L F + ++ I M + + +V E Q+QG Sbjct: 286 ADGTGYILLAFATRGWMAFPIMVLLASGGIGMPALQAMLSRQVDEERQGQLQG 338
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 99.4 bits (247), Expect = 4e-27 Identities = 67/254 (26%), Positives = 114/254 (44%), Gaps = 7/254 (2%) Query: 4 RTAFIMGASQGIGKAIALKLADNGFHTVINSRVPENIESV--KEEILAKHPDAGVTVLAG 61 + AFI GA+QGIG+A+A LA G H PE +E V + A+H +A Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEA----FPA 64 Query: 62 DMSDQKTRAGIFEEIRSQCGRLDVLINNIPGGSPDTFENCDIEDMTNTFTNKTIAYIDSM 121 D+ D I I + G +D+L+N P + E+ TF+ + ++ Sbjct: 65 DVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 122 KTAAAIMKQHEFGRIINIVGNLWKEPGANMFTNSMMNAALINASKNIAIQLAPFHITVNC 181 ++ + M G I+ + N P +M + AA + +K + ++LA ++I N Sbjct: 125 RSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNI 184 Query: 182 LNPGFIATDRYHQFVKNVMKQNGISKAEAEERIASGVPMKRVGTPEETAALAAFLASEEA 241 ++PG TD + + K E +G+P+K++ P + A FL S +A Sbjct: 185 VSPGSTETDMQWSLWADENGAEQVIKGSLET-FKTGIPLKKLAKPSDIADAVLFLVSGQA 243 Query: 242 SYITGQQVSADGGS 255 +IT + DGG+ Sbjct: 244 GHITMHNLCVDGGA 257
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 30.6 bits (69), Expect = 0.014 Identities = 15/47 (31%), Positives = 24/47 (51%) Query: 153 TLVLPPPPDPQSYVFTANSGDSTVSVIDSDLNTVVKTIPFSDVPTNL 199 + V P P NSGD V++ ++D +T + T+P+S VP Sbjct: 323 STVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQ 369
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 56.0 bits (135), Expect = 1e-10 Identities = 60/326 (18%), Positives = 121/326 (37%), Gaps = 16/326 (4%) Query: 62 LGYLTNRYGARLMFMISFILLLFPVFWISIADSLFDLIAGGFFLGIGGAVFSIGVTSLPK 121 LG L++R+G R + ++S ++ A L+ L G GI GA ++ + Sbjct: 63 LGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIAD 122 Query: 122 YYPKEKH----GVVNGIYGAGNI-GTAVTTFAAPVIAQAAGWKATVQMYLVLLAVFALLH 176 ++ G ++ +G G + G + A + A L L LL Sbjct: 123 ITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLP 182 Query: 177 VLFG--DRHEKKVKVSIKTQMK-AVYRNHVLWMLSLFYFITFGAFVAFTIYLPNFLVEHF 233 R ++ ++ + A V ++++F+ + V +++ F + F Sbjct: 183 ESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVI-FGEDRF 241 Query: 234 GLSPADAGLRTAGFIAVSTLLRP-VGGFLADKLSPLRILMFVFAGLTLSGVMLSFSPTIG 292 G+ A F + +L + + G +A +L R LM G+ G Sbjct: 242 HWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALML---GMIADGTGYILLAFAT 298 Query: 293 LY--AFGSLTVAVCSGIGNGTVFKLVPFYFSKQA-GIANGIVSAMGGLGGFFPPLILASV 349 AF + + GIG + ++ ++ G G ++A+ L PL+ ++ Sbjct: 299 RGWMAFPIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAI 358 Query: 350 FQATGQYAIGFMALSEVALASFVLVI 375 + A+ G+ ++ AL L Sbjct: 359 YAASITTWNGWAWIAGAALYLLCLPA 384
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 110 bits (276), Expect = 9e-32 Identities = 32/121 (26%), Positives = 56/121 (46%) Query: 1 MMNEKILIVDDQYGIRILLNEVFHKEGYQTFQAANGIQALDIVTKERPDLVLLDMKIPGM 60 M IL+ DD IR +LN+ + GY +N + DLV+ D+ +P Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 61 DGIEILKRMKMIDESIRVIIMTAYGELDMIKESKELGALTHFAKPFDIDEIRDAVKKYLP 120 + ++L R+K + V++M+A ++ E GA + KPFD+ E+ + + L Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 121 L 121 Sbjct: 121 E 121
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 32.1 bits (73), Expect = 0.001 Identities = 16/83 (19%), Positives = 28/83 (33%) Query: 85 AEQRLAELERKLDILTKEKQGENHLLSRIEELERQLKQKADEGVSYQLLQHRREIDDLNT 144 E + E +L + + + + +E + + Q + +L Q I L Sbjct: 257 QENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTL 316 Query: 145 ELQTLASRIQELAQTAPLSETAA 167 EL R Q AP+S Sbjct: 317 ELAKNEERQQASVIRAPVSVKVQ 339
>SSPAMPROTEIN#Salmonella surface presentation of antigen gene type M signature. Length = 147 Score = 29.7 bits (66), Expect = 0.006 Identities = 22/94 (23%), Positives = 48/94 (51%), Gaps = 8/94 (8%) Query: 24 KEETARASADEPVVIPDEAIRLRILANSDNDEDQKLKRQ-------IRDAVNKQITDWVK 76 ++E R +E ++ ++ L++L ++ E+++L R+ + V +QI D Sbjct: 29 QDEDRRLQVEEEAIV-EQIAGLKLLLDTLRAENRQLSREEIYALLRKQSIVRRQIKDLEL 87 Query: 77 DITSIEEARRLIRSKLPEIKEIAKQTMKEKGAHQ 110 I I+E R + K E +E +K ++++G +Q Sbjct: 88 QIIQIQEKRSELEKKREEFQEKSKYWLRKEGNYQ 121
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 1042 bits (2697), Expect = 0.0 Identities = 369/570 (64%), Positives = 453/570 (79%), Gaps = 5/570 (0%) Query: 2 KMSREQYAELFGPTTGDKVRLGDTDLWIEVEKDFTNYGEEMIFGGGKTIRDGMGQNGRIT 61 +MSR YA +FGPT GDKVRL DT+L+IEVEKDFT +GEE+ FGGGK IRDGMGQ+ ++T Sbjct: 4 RMSRAAYANMFGPTVGDKVRLADTELFIEVEKDFTTHGEEVKFGGGKVIRDGMGQS-QVT 62 Query: 62 GKDGALDLVITNAVILDYTGIVKADIGVKDGRIVGVGKSGNPDIMDGVDPHMIIGAGTEV 121 + GA+D VITNA+ILD+ GIVKADIG+KDGRI +GK+GNPD+ GV +I+G GTEV Sbjct: 63 REGGAVDTVITNALILDHWGIVKADIGLKDGRIAAIGKAGNPDMQPGVT--IIVGPGTEV 120 Query: 122 ISGEGKIVTAGGVDTHIHFICPQQMEVALSSGVTTLLGGGTGPATGSKATTCTSGAWYMS 181 I+GEGKIVTAGG+D+HIHFICPQQ+E AL SG+T +LGGGTGPA G+ ATTCT G W+++ Sbjct: 121 IAGEGKIVTAGGMDSHIHFICPQQIEEALMSGLTCMLGGGTGPAHGTLATTCTPGPWHIA 180 Query: 182 RMLEAAEEFPINVGFLGKGNASDKAPLIEQVEAGVIGLKLHEDWGSTPSAIKACMEAADE 241 RM+EAA+ FP+N+ F GKGNAS L+E V G LKLHEDWG+TP+AI C+ ADE Sbjct: 181 RMIEAADAFPMNLAFAGKGNASLPGALVEMVLGGATSLKLHEDWGTTPAAIDCCLSVADE 240 Query: 242 ADIQVAIHTDTINEAGFLENTLDAIGDRVIHTYHIEGAGGGHAPDIMKLASYANILPSST 301 D+QV IHTDT+NE+GF+E+T+ AI R IH YH EGAGGGHAPDI+++ N++PSST Sbjct: 241 YDVQVMIHTDTLNESGFVEDTIAAIKGRTIHAYHTEGAGGGHAPDIIRICGQPNVIPSST 300 Query: 302 TPTIPYTVNTMDEHLDMMMVCHHLDSKVPEDVAFSHSRIRAATIAAEDILHDIGAISMTS 361 PT PYTVNT+ EHLDM+MVCHHL +PED+AF+ SRIR TIAAEDILHDIGA S+ S Sbjct: 301 NPTRPYTVNTLAEHLDMLMVCHHLSPTIPEDIAFAESRIRKETIAAEDILHDIGAFSIIS 360 Query: 362 SDSQAMGRVGEVIIRTWQVADKMKKQRGALSGENG-NDNVRAKRYIAKYTINPAVTHGLS 420 SDSQAMGRVGEV IRTWQ ADKMK+QRG L E G NDN R KRYIAKYTINPA+ HGLS Sbjct: 361 SDSQAMGRVGEVAIRTWQTADKMKRQRGRLKEETGDNDNFRVKRYIAKYTINPAIAHGLS 420 Query: 421 HEVGSVEKGKLADLVLWDPVFFGVKPELVLKGGMIARAQMGDPNASIPTPEPVFMRQMYA 480 HE+GS+E GK ADLVLW+P FFGVKP++VL GG IA A MGDPNASIPTP+PV R M+ Sbjct: 421 HEIGSLEVGKRADLVLWNPAFFGVKPDMVLLGGTIAAAPMGDPNASIPTPQPVHYRPMFG 480 Query: 481 SYGKANRNTSITFMSQAGIANGVPEKLGLEKMISPVRNIR-KLSKLDMKLNDAMPNIQVD 539 +YG++ N+S+TF+SQA + G+ +LG+ K + V+N R + K M N P+I+VD Sbjct: 481 AYGRSRTNSSVTFVSQASLDAGLAGRLGVAKELVAVQNTRGGIGKASMIHNSLTPHIEVD 540 Query: 540 PKTYQVFADGEELACQPVSYVPLGQRYFLF 569 P+TY+V ADGE L C+P + +P+ QRYFLF Sbjct: 541 PETYEVRADGELLTCEPATVLPMAQRYFLF 570
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 479 bits (1234), Expect = e-173 Identities = 176/330 (53%), Positives = 244/330 (73%), Gaps = 5/330 (1%) Query: 1 MFARDIGIDLGTANVLIHVKGKGIVLNEPSVVALDKNSG----KVLAVGEEARRMVGRTP 56 MF+ D+ IDLGTAN LI+VKG+GIVLNEPSVVA+ ++ V AVG +A++M+GRTP Sbjct: 8 MFSNDLSIDLGTANTLIYVKGQGIVLNEPSVVAIRQDRAGSPKSVAAVGHDAKQMLGRTP 67 Query: 57 GNIVAIRPLKDGVIADFEVTEAMLKHFINKLNVKGLFS-KPRMLICCPTNITSVEQKAIK 115 GNI AIRP+KDGVIADF VTE ML+HFI +++ PR+L+C P T VE++AI+ Sbjct: 68 GNIAAIRPMKDGVIADFFVTEKMLQHFIKQVHSNSFMRPSPRVLVCVPVGATQVERRAIR 127 Query: 116 EAAEKSGGKHVYLEEEPKVAAIGAGMEIFQPSGNMVVDIGGGTTDIAVISMGDIVTSSSI 175 E+A+ +G + V+L EEP AAIGAG+ + + +G+MVVDIGGGTT++AVIS+ +V SSS+ Sbjct: 128 ESAQGAGAREVFLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNGVVYSSSV 187 Query: 176 KMAGDKFDMEILNYIKREYKLLIGERTAEDIKVKVATVFPDARHEEITIRGRDMVSGLPR 235 ++ GD+FD I+NY++R Y LIGE TAE IK ++ + +P EI +RGR++ G+PR Sbjct: 188 RIGGDRFDEAIINYVRRNYGSLIGEATAERIKHEIGSAYPGDEVREIEVRGRNLAEGVPR 247 Query: 236 TITVNSKEVEEALRESVAVIVQAAKQVLERTPPELSADIIDRGVIITGGGALLNGLDQLL 295 T+NS E+ EAL+E + IV A LE+ PPEL++DI +RG+++TGGGALL LD+LL Sbjct: 248 GFTLNSNEILEALQEPLTGIVSAVMVALEQCPPELASDISERGMVLTGGGALLRNLDRLL 307 Query: 296 AEELRVPVLVAENPMDCVAVGTGVMLDNMD 325 EE +PV+VAE+P+ CVA G G L+ +D Sbjct: 308 MEETGIPVVVAEDPLTCVARGGGKALEMID 337
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 34.2 bits (78), Expect = 5e-04 Identities = 10/32 (31%), Positives = 15/32 (46%) Query: 4 GLYTATSAMITQQRRTEMLSNNIANANTSGYK 35 + A S + Q SNNI++ N +GY Sbjct: 3 LINNAMSGLNAAQAALNTASNNISSYNVAGYT 34 Score = 29.2 bits (65), Expect = 0.022 Identities = 9/43 (20%), Positives = 18/43 (41%) Query: 214 SLKQGVSELSNVDVTSTYTEMTEAYRSFEANQKVIQAYDKSMD 256 L +S V++ Y + + + AN +V+Q + D Sbjct: 498 QLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFD 540
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 34.5 bits (79), Expect = 3e-04 Identities = 9/43 (20%), Positives = 21/43 (48%) Query: 231 LEGSNVDLSKEMTDLIVSQRSYQLNSRTITLGDQMLGLINSVR 273 S V+L +E +L Q+ Y N++ + + + + ++R Sbjct: 504 QSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINIR 546 Score = 30.3 bits (68), Expect = 0.007 Identities = 10/32 (31%), Positives = 18/32 (56%) Query: 4 SMLTASTALNQLQQQMDTVSSNLSNSDTTGYK 35 + A + LN Q ++T S+N+S+ + GY Sbjct: 3 LINNAMSGLNAAQAALNTASNNISSYNVAGYT 34
>MECHCHANNEL#Bacterial mechano-sensitive ion channel signature. Length = 136 Score = 154 bits (390), Expect = 1e-51 Identities = 71/133 (53%), Positives = 93/133 (69%), Gaps = 10/133 (7%) Query: 1 MWSEFKSFAMRGNIMDLAIGVVIGGAFGKIVTSLVEDIIMPLVGLLLGGLDFSGLAVTFG 60 + EF+ FAMRGN++DLA+GV+IG AFGKIV+SLV DIIMP +GLL+GG+DF AVT Sbjct: 3 IIKEFREFAMRGNVVDLAVGVIIGAAFGKIVSSLVADIIMPPLGLLIGGIDFKQFAVTLR 62 Query: 61 DAH-------IKYGSFIQTIVNFFIISFSIFIVIRTIGKLRRKKEAEEEAEEAEDTDQQT 113 DA + YG FIQ + +F I++F+IF+ I+ I KL RKK EE A ++ Sbjct: 63 DAQGDIPAVVMHYGVFIQNVFDFLIVAFAIFMAIKLINKLNRKK---EEPAAAPAPTKEE 119 Query: 114 ELLTEIRDLLKQR 126 LLTEIRDLLK++ Sbjct: 120 VLLTEIRDLLKEQ 132
>SUBTILISIN#Subtilisin serine protease family (S8) signature. Length = 326 Score = 30.2 bits (68), Expect = 0.011 Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 3/69 (4%) Query: 58 GVVKEAKKRGMKVIIVDAQNDSSKQSNDVEDLIQQGVDAL---LINPTDSSAISTAVESA 114 GV EA +KV+ + I+Q VD + L P D + AV+ A Sbjct: 105 GVAPEADLLIIKVLNKQGSGQYDWIIQGIYYAIEQKVDIISMSLGGPEDVPELHEAVKKA 164 Query: 115 NSLGIPVIA 123 + I V+ Sbjct: 165 VASQILVMC 173
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 31.5 bits (71), Expect = 0.005 Identities = 14/50 (28%), Positives = 30/50 (60%) Query: 72 TGGIDLSVGAILALSSALVAGMMVSGIDPILAVIIGCVIGAVLGMINGLL 121 TG ID S+ I + +++ +G+ + ++ + ++GAV G+I+G+L Sbjct: 361 TGAIDASLTTISTVLASVSSGISAAATTSLVGAPVSALVGAVTGIISGIL 410
>PF06580#Sensor histidine kinase Length = 349 Score = 41.8 bits (98), Expect = 3e-06 Identities = 30/179 (16%), Positives = 64/179 (35%), Gaps = 30/179 (16%) Query: 219 FQEIRNLRQNVRNALYEVRRIIYDL-----RPMALDDLGLIP------TLRKYLYTTE-E 266 F + N+R + + R ++ L + + + + YL + Sbjct: 176 FNALNNIRALILEDPTKAREMLTSLSELMRYSLRYSNARQVSLADELTVVDSYLQLASIQ 235 Query: 267 YNGKVKIHFQCIGDTENQRLAPQFEVALFRLAQEAVTNALKH--SESEE---ITVKVEVT 321 + +++ Q + ++ P L Q V N +KH ++ + I +K Sbjct: 236 FEDRLQFENQINPAIMDVQV-PPM------LVQTLVENGIKHGIAQLPQGGKILLKGTKD 288 Query: 322 ADFVVLIIKDNGKGFDIKDAKQKKNKSFGLLGMKERVDLL---EGTITIDSKIGLGTFI 377 V L +++ G K++ GL ++ER+ +L E I + K G + Sbjct: 289 NGTVTLEVENTGSLALK---NTKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAM 344
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 80.3 bits (198), Expect = 1e-19 Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 2/118 (1%) Query: 1 MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMP 60 MT I++ DD R + + L ++V + R + D+V+ D+ MP Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAG-YDVRITSN-AATLWRWIAAGDGDLVVTDVVMP 58 Query: 61 NVNGVEATKQLVELYPESKVIILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVK 118 + N + ++ + P+ V+++S + A + GA YL K D LI + Sbjct: 59 DENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 175 bits (446), Expect = 8e-51 Identities = 126/550 (22%), Positives = 213/550 (38%), Gaps = 66/550 (12%) Query: 7 GLETARRALSAQQTALSTVSNNVANANTEGYTRQRVTLQSTSPYPAVSKNSDLTAGQIGT 66 + A L+A Q AL+T SNN+++ N GYTRQ + + G +G Sbjct: 3 LINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLG-------AGGWVGN 55 Query: 67 GVKAGSVERVRDSFLDYQYRTENTKLGYYTARSNSLSQMEGVMKELDDNGLNGSLSSFWN 126 GV V+R D+F+ Q R T+ TAR +S+++ ++ + L + F+ Sbjct: 56 GVYVSGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST-STSSLATQMQDFFT 114 Query: 127 ALQDLATNPENTGARSVLQEQGKSLAESFNYISTSLTNIQGDIKKNLDNTADQVNSILNQ 186 +LQ L +N E+ AR L + + L F L + + + + DQ+N+ Q Sbjct: 115 SLQTLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQ 174 Query: 187 LNDLNNQIAAVEPSGML--PNDLYDQRDRLIDQLSSMANIKV------------------ 226 + LN+QI+ + G PN+L DQRD+L+ +L+ + ++V Sbjct: 175 IASLNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSL 234 Query: 227 -------------SYNKSGGHALATAEGTVNVELLNG---NNNSLGTLLDGNTKTVSEMK 270 S +A +GT + N SLG +L ++ + + + Sbjct: 235 VQGSTARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTR 294 Query: 271 INYDKDSGLVSSVSVGSSTVNADAFTGKGSLLGLIESYGYMSNGEEKGLYPEMLTALDNM 330 + + + DA G I + N + KG T D Sbjct: 295 NTLGQLALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDAS 354 Query: 331 ALSFAD---AFNAVHEKGKTYTGEQGAAFFDFSGGEAV-----------PAKGAAAKIK- 375 A+ D +F+ + + G+ PA + +K Sbjct: 355 AVLATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKP 414 Query: 376 VSDKI----LASTD--NIAASLNGEKSDGTNATNLAAVQN-SKLTINGETTTINDFYESL 428 VSD I + TD IA + + D N A + S G + ND Y SL Sbjct: 415 VSDAIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASL 474 Query: 429 IGKLGVNSQKAANLMNNSESNTLSADERRQSVSAVSLDEEMTNMIQFQHAYNAAARIITM 488 + +G + + ++QS+S V+LDEE N+ +FQ Y A A+++ Sbjct: 475 VSDIGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQT 534 Query: 489 QDEIFDKIIN 498 + IFD +IN Sbjct: 535 ANAIFDALIN 544
>MALTOSEBP#Maltose binding protein signature. Length = 396 Score = 127 bits (319), Expect = 7e-35 Identities = 115/409 (28%), Positives = 191/409 (46%), Gaps = 30/409 (7%) Query: 5 VKKGLALLTASVLAFCLGACSNSKESAGSDGKKVLTVSVEETYKKYIESIKGEFEKENHV 64 +K G +L S L + S S + +GK V+ ++ ++ Y E + +FEK+ + Sbjct: 3 IKTGARILALSALTTMM--FSASALAKIEEGKLVIWINGDKGYNGLAE-VGKKFEKDTGI 59 Query: 65 TINIAEKQMFDQLEALPLDGPAGNAPDVMLAAYDRIGSLAQQGHLLDLKPADTKSFGDK- 123 + + + E P G+ PD++ A+DR G AQ G L ++ P K+F DK Sbjct: 60 KVTVEHPDKLE--EKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITP--DKAFQDKL 115 Query: 124 ---EMQQVTVNGKVYGMPLVIETLVLYYNKDLIKKAPATFKDLETLTEDPRFSFASEKGK 180 V NGK+ P+ +E L L YNKDL+ P T++++ L ++ + KGK Sbjct: 116 YPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELK-----AKGK 170 Query: 181 STGFLAKWTDFYMSYGLLSGYGGYVFG-KNGT-DPGDIGLNNKGAAEAVKYAEKWFKTYW 238 S + + Y ++ L++ GGY F +NG D D+G++N GA + + K Sbjct: 171 S-ALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKH 229 Query: 239 PKGMQDNSSADDFIQQMFLDKKAAAIIGGPWSAANFQEAGLNYGAAPIPTLPNGKEYAPF 298 D S A + F + A I GPW+ +N + +NYG +PT G+ PF Sbjct: 230 MNADTDYSIA----EAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTF-KGQPSKPF 284 Query: 299 AGGKGWVASKYTKEPELAEKWLE-YATNDANAYAFYEDTNEVPANTAARKKAGEQ--KNE 355 G + + ELA+++LE Y D A +D P A K E+ K+ Sbjct: 285 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDK---PLGAVALKSYEEELAKDP 341 Query: 356 LASAVIKQYESAAPAPNIPEMAEVWTGAESLMFDAASGKKTAKKSADDA 404 +A ++ + PNIP+M+ W + + +AASG++T ++ DA Sbjct: 342 RIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEALKDA 390
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 32.9 bits (75), Expect = 0.002 Identities = 36/191 (18%), Positives = 73/191 (38%), Gaps = 15/191 (7%) Query: 42 SATGIIFSVNAVFALCMQPLYGFISDKLGLKKKILFMISCLLIFTGPFYIFVYGPLLQYN 101 + GI+ ++ A+ P+ G +SD+ G ++ + ++S L + I P L + Sbjct: 43 AHYGILLALYALMQFACAPVLGALSDRFG--RRPVLLVS-LAGAAVDYAIMATAPFL-WV 98 Query: 102 VFLGAVVGGLYLGAAFLAGIGAIETYIEKVSRKYDFEYGKSRMWGSLGWAAAAFFAGQLF 161 +++G +V G+ GA I + R F + + G A G + Sbjct: 99 LYIGRIVAGI-TGATGAVAGAYIADITDGDERARHFGFMSACF--GFGMVAGPVLGGLMG 155 Query: 162 NINPNINFWIASV---SAVILTAIIM--SVKIE---MTDHEKNRADSVRLKDVGRLFLLR 213 +P+ F+ A+ + ++ S K E + N S R + Sbjct: 156 GFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAAL 215 Query: 214 DFWFFMLYIIG 224 FF++ ++G Sbjct: 216 MAVFFIMQLVG 226
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 30.2 bits (68), Expect = 0.020 Identities = 30/153 (19%), Positives = 63/153 (41%), Gaps = 35/153 (22%) Query: 5 IVIAAIIVLLLLITV-AKLNPFISL---LITSILVGFATGMNLPDIIASMKTGLGNTLSL 60 I++ +++ L L + A L P I++ L+ + + A G ++ NTL++ Sbjct: 348 IMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSI------------NTLTM 395 Query: 61 LAIVLALGTM----------LGKMMAESGGAERIAHTLIGRFGKKKVHWAMMAVAFI--- 107 +VLA+G + + ++M E + A ++ A++ +A + Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEA----TEKSMSQIQGALVGIAMVLSA 451 Query: 108 VGIPVFFQVG--FVLLVPLLFTIAIETGVSLVT 138 V IP+ F G + TI +S++ Sbjct: 452 VFIPMAFFGGSTGAIYRQFSITIVSAMALSVLV 484
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 168 bits (426), Expect = 5e-52 Identities = 73/333 (21%), Positives = 122/333 (36%), Gaps = 49/333 (14%) Query: 1 MKHIAIIGGAGFIGSELAALLQAKGYHTIIADQKEPAFDT---EYRQT------------ 45 MK + G AGFIG ++ L G+ + D +D + R Sbjct: 1 MK-YLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKI 59 Query: 46 DILDRTSLRESLR--GADAVVHLAAMVGVDSCRSNEEDVIRVNFEGTKNVTEVCGELGIS 103 D+ DR + + + V + V N N G N+ E C I Sbjct: 60 DLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQ 119 Query: 104 TLLFSSSSEVFGDSPDFPYTETSR-KLPKSAYGKAKLQSEEYLREQASDELHIRVV--RY 160 LL++SSS V+G + P++ P S Y K + E + S + R+ Sbjct: 120 HLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKK-ANELMAHTYSHLYGLPATGLRF 178 Query: 161 FNVYGPKQREDFVINKFFSLAENGSELPLYGDGGQIRCFSYISDIVTGTYLAL------- 213 F VYGP R D + KF G + +Y G R F+YI DI Sbjct: 179 FTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPHAD 238 Query: 214 ----------IHEGAVFEDFNIGNDQPITIKELAEKVNVLSGRE-KDNYLFKKLGEDGVR 262 A + +NIGN P+ + + + + G E K N L + G Sbjct: 239 TQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLPLQPG----- 293 Query: 263 GKDIEIFKRAPSIEKAKRLLGYAPKVSLNEGLE 295 ++ + + + ++G+ P+ ++ +G++ Sbjct: 294 ----DVLETSADTKALYEVIGFTPETTVKDGVK 322
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 123 bits (310), Expect = 3e-36 Identities = 75/256 (29%), Positives = 127/256 (49%), Gaps = 7/256 (2%) Query: 5 LKGKTALVTGSTSGIGKAIAASLIAEGAAVIVNGRREEKVNETIRELEKQTPDARLYPA- 63 ++GK A +TG+ GIG+A+A +L ++GA + EK+ + + L+ + A +PA Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 64 -AFDLGTAEGCGAIFQQYPDVDILVNNLGIFEPAEYFDIPDEEWLRFFEVNIMSGVRLTR 122 E I ++ +DILVN G+ P + DEEW F VN +R Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 123 RYAKRMIERKEGRVIFIASEAAVMPSQEMAHYSATKTTQLSLSRSLAELTEGTNVTVNTV 182 +K M++R+ G ++ + S A +P MA Y+++K + ++ L N+ N V Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 183 MPGSTKTEGVETMLESLYPGENLTAAEAERRFMKENRPTSIIQRLIRPEEIAHFVAFLSS 242 PGST+T+ M SL+ EN A + + ++ + +++L +P +IA V FL S Sbjct: 186 SPGSTETD----MQWSLWADEN-GAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVS 240 Query: 243 PLSSAINGSALRIDGG 258 + I L +DGG Sbjct: 241 GQAGHITMHNLCVDGG 256
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 41.6 bits (97), Expect = 1e-05 Identities = 42/259 (16%), Positives = 76/259 (29%), Gaps = 60/259 (23%) Query: 421 KEKKVKLLTARRKLIKAALTAI---------KENMNETNKTASFAVIAEYNEKMKNLRFQ 471 E + L AR+ ++ AL K E K A A AE + ++ Sbjct: 146 LEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNF 205 Query: 472 QFTVKNRTKKDERKVRAQG--IQAEQEELLRLIERGDIPEETADSLQERFDELEVLYTNP 529 + K E + A ++ L + +L+ LE Sbjct: 206 STADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALE------ 259 Query: 530 FKVGLSKKKLKRLMYWIFFGEHKKPEMTILNEEGLIRATRVKTAKAAIESLK--KHMTEE 587 + L + + + ++KT +A +L+ K E Sbjct: 260 -------ARQAEL----------EKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEH 302 Query: 588 NKDVTLAVISFYNHLIFRLGHSYHEQNPSRRFENQKLEIKLRAVQAIRNEIQTLFEEREI 647 V A +R+ + L+ A + + E Q L E+ +I Sbjct: 303 QSQVLNA---------------------NRQSLRRDLDASREAKKQLEAEHQKLEEQNKI 341 Query: 648 SRDMSHELRQYINDVEAAM 666 S LR D++A+ Sbjct: 342 SEASRQSLR---RDLDASR 357
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 35.3 bits (81), Expect = 2e-04 Identities = 35/173 (20%), Positives = 59/173 (34%), Gaps = 27/173 (15%) Query: 209 RENRTYYRLLSTPITSKQYVLAN---AAVNIIIMAVQILFAVLFMGAAFHIHPSFPLWQL 265 RT+ +L T + VL AA + I +G L Sbjct: 95 EGQRTWEAMLYTQLRLGDIVLGEMAWAATKAALAGAGIGVVAAALGYT-------QWLSL 147 Query: 266 FVLMMLFALSAIGVAFIAVGFSNSSASASALL----------NLIVVPTCLLAGCFFPGN 315 L+AL I A + F++ +AL L++ P L+G FP + Sbjct: 148 -----LYALPVI--ALTGLAFASLGMVVTALAPSYDYFIFYQTLVITPILFLSGAVFPVD 200 Query: 316 IMPKTVQTIAEFLPQRWVLDTVDQLQQGRTFQSLMLNIIILGAFAGALLLIAA 368 +P QT A FLP +D + + G + ++ L + ++ Sbjct: 201 QLPIVFQTAARFLPLSHSIDLIRPIMLGHPVVDVCQHVGALCIYIVIPFFLST 253
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 35.8 bits (82), Expect = 3e-04 Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 11/94 (11%) Query: 135 ARSSDRLKKYEEQSDNMRSSIEKLTKQLHSSTEYIKQSEYT-GKLEERNRLSQAIHDKIG 193 A E QS + ++ + L + L +S E KQ E KLEE+N++S+A Sbjct: 291 AALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEA------ 344 Query: 194 HSITGA---LIQMEAAKRMLGSHPDKAAELLQNA 224 S L AK+ L + K E + + Sbjct: 345 -SRQSLRRDLDASREAKKQLEAEHQKLEEQNKIS 377
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 66.8 bits (163), Expect = 3e-15 Identities = 25/116 (21%), Positives = 48/116 (41%), Gaps = 3/116 (2%) Query: 2 KINVIIADDNSFIREGMKIILHTYEEFTVSATLENGLEAAEYCKHNPVDIALLDVRMPVM 61 +++ADD++ IR + L + + V T N + D+ + DV MP Sbjct: 3 GATILVADDDAAIRTVLNQAL-SRAGYDVRIT-SNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 62 NGVEAAKRIAEETDTKP-MILTTFDDDEYILEAIKNGAKGYLLKNTEPERIRDAIK 116 N + RI + P ++++ + ++A + GA YL K + + I Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116
>PF06580#Sensor histidine kinase Length = 349 Score = 41.4 bits (97), Expect = 4e-06 Identities = 32/192 (16%), Positives = 73/192 (38%), Gaps = 41/192 (21%) Query: 279 TIDVIEGEAEKLEKKIKDLLYLTKLDYLMKQRVHHETFDIVKVTEEV--------IERLK 330 ++ I + K +++L L LM+ + + V + +E+ + ++ Sbjct: 178 ALNNIRALILEDPTKAREMLT--SLSELMRYSLRYSNARQVSLADELTVVDSYLQLASIQ 235 Query: 331 WARKELSWTVETEDAL---MMPGDPEQWSKLLENILENQIRYA------ETAIHIRISQN 381 + + L + + A+ +P L++ ++EN I++ I ++ +++ Sbjct: 236 FEDR-LQFENQINPAIMDVQVP------PMLVQTLVENGIKHGIAQLPQGGKILLKGTKD 288 Query: 382 QQQIVMTVKNDGPPIEDEMLSSLYEPFNKGKKGEFGIGLSIVKRILTL---HKASISIEN 438 + + V+N G K K G GL V+ L + +A I + Sbjct: 289 NGTVTLEVENTGSL------------ALKNTKESTGTGLQNVRERLQMLYGTEAQIKLSE 336 Query: 439 GQSGVIYRIIIP 450 Q V ++IP Sbjct: 337 KQGKVNAMVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 86.4 bits (214), Expect = 8e-22 Identities = 30/125 (24%), Positives = 59/125 (47%), Gaps = 3/125 (2%) Query: 4 TIYLVEDEDNLNELLTKYLENEGWNITSFTKGEDARKQMQP-SPHLWILDIMLPDTDGYT 62 TI + +D+ + +L + L G+++ + + + L + D+++PD + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 63 LIKEIKEKDPDVPVIFISARDADIDR-VLGLELGSNDYIAKPFLPRELIIRVQKLLELVY 121 L+ IK+ PD+PV+ +SA + E G+ DY+ KPF ELI + + L Sbjct: 65 LLPRIKKARPDLPVLVMSA-QNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 122 KEQPA 126 + Sbjct: 124 RRPSK 128
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 181 bits (460), Expect = 1e-61 Identities = 116/153 (75%), Positives = 131/153 (85%) Query: 1 MNTQNAKKTETLVEKSMNTQLSNWFILYSKLHRFHWYVKGPHFFTLHEKFEELYNEAAET 60 M T+NAK +TLVE S+NTQLSNWF+LYSKLHRFHWYVKGPHFFTLHEKFEELY+ AAET Sbjct: 1 MKTENAKTNQTLVENSLNTQLSNWFLLYSKLHRFHWYVKGPHFFTLHEKFEELYDHAAET 60 Query: 61 ADAIAERLLAIGGQPAATLHTYLEQASITDEGQEKTASEMVESLVQDYKQISRESKFVIG 120 D IAERLLAIGGQP AT+ Y E ASITD G E +ASEMV++LV DYKQIS ESKFVIG Sbjct: 61 VDTIAERLLAIGGQPVATVKEYTEHASITDGGNETSASEMVQALVNDYKQISSESKFVIG 120 Query: 121 IAEEQNDPSTADLFVGLVEQADKHVWMLSAYLG 153 +AEE D +TADLFVGL+E+ +K VWMLS+YLG Sbjct: 121 LAEENQDNATADLFVGLIEEVEKQVWMLSSYLG 153
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 29.7 bits (66), Expect = 0.013 Identities = 10/24 (41%), Positives = 16/24 (66%) Query: 110 KQWSKEDEDAVAKALKATKLEEMA 133 K++SK D DA+ AL + K ++ A Sbjct: 402 KKFSKADRDAIFNALASVKYDDWA 425
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 52.9 bits (127), Expect = 2e-10 Identities = 36/216 (16%), Positives = 72/216 (33%), Gaps = 28/216 (12%) Query: 3 KILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDI 62 ILV DD A+ L D + DL++ D+ + D+ Sbjct: 5 TILVADDDAAIRTVLNQALS---RAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE- 60 Query: 63 SGIELSKKILKENPLCKIIVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLN 122 + +L +I K P ++V + ++ G + + K +++ I L Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 123 ------GQILVDFSYFKQLMTQQKTKTSSSPQSEQ-----DRLTPRERHILQEVEKGLTN 171 ++ D L+ + S ++ RL + ++ E G Sbjct: 121 EPKRRPSKLEDDSQDGMPLVGR-------SAAMQEIYRVLARLMQTDLTLMITGESGTGK 173 Query: 172 QEIADALH-LSKRSIEYSLTSIFNKLNVGSRTEAVL 206 + +A ALH KR F +N+ + ++ Sbjct: 174 ELVARALHDYGKRR-----NGPFVAINMAAIPRDLI 204
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 26.7 bits (59), Expect = 0.030 Identities = 14/74 (18%), Positives = 30/74 (40%), Gaps = 11/74 (14%) Query: 5 VKWAVAVCILMGSLICLVASFGTLRLPDVYTRAHASSKGSTLGVNLVLLGVLGYLWMLTG 64 VA+ ++ +CL A + + +P L V L ++GVL + Sbjct: 872 APALVAISFVV-VFLCLAALYESWSIPVSVM----------LVVPLGIVGVLLAATLFNQ 920 Query: 65 EISVKILLGIIFIL 78 + V ++G++ + Sbjct: 921 KNDVYFMVGLLTTI 934
>TYPE3OMGPROT#Type III secretion system outer membrane G protein family signature. Length = 607 Score = 31.0 bits (70), Expect = 0.007 Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 8/67 (11%) Query: 23 LVTPRLASAVSNEGALGSLASGYVSPQALEKQLIEMKELTNRSFQVNLFVPEERQMP--E 80 ++ PR+ +EG LA G + Q L ++ + E++N+S +N + + P + Sbjct: 503 IIEPRII----DEGIAHHLALG--NGQDLRTGILTVDEISNQSTTLNKLLGGSQCQPLNK 556 Query: 81 AELVEKW 87 A+ V+KW Sbjct: 557 AQEVQKW 563
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 30.0 bits (67), Expect = 0.034 Identities = 49/266 (18%), Positives = 91/266 (34%), Gaps = 26/266 (9%) Query: 400 SESIDKATAQVNEMKDGLSDLAEAA---------AVVTETSIESAEISGAGERLVKKTAG 450 +E+ KA A + + L D+ A + +A + ERL A Sbjct: 77 AEAQAKAKANRDALTQRLKDIVNEALRHNASRTPSATELAHANNAAMQAEDERLRLAKAE 136 Query: 451 QMGAIDQSVSKAEQVVQGLELKSQDITSILRVINGIADQTNLLA-----LNAAIEAARAG 505 + + AE+ Q E + ++I R Q L L A E A+A Sbjct: 137 E--KARKEAEAAEKAFQEAEQRRKEIE---REKAETERQLKLAEAEEKRLAALSEEAKAV 191 Query: 506 EYGRGFSVVAE-EVRKLAVQSADSAKEIESLIHEIVKEIHTSLGMLESVNHEVKSGLQLT 564 E + A+ EV K+ + + S IH E+ T L +E+ Sbjct: 192 EIAQKKLSAAQSEVVKMDGEIKTLNSRLSSSIHARDAEMKT----LAGKRNELAQASAKY 247 Query: 565 DETEKSFRDISVKTNQIAGELQNMNATVEQLSAGSQEVSNASEDIAAVSRQSAAGIQDIA 624 E ++ + +S + N AT ++ AG + A+ +R + Sbjct: 248 KELDELVKKLSPRANDPLQNRPFFEATRRRVGAGKIREEKQKQVTASETRINRINAD--I 305 Query: 625 ASAEEQLASMEEISSSAVTLEKMAEE 650 ++ ++ + ++ + AEE Sbjct: 306 TQIQKAISQVSNNRNAGIARVHEAEE 331
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 31.5 bits (71), Expect = 0.013 Identities = 21/111 (18%), Positives = 46/111 (41%) Query: 361 VNNVASSSEELTASAEQTSKATEHITLAIEQFSNGNESQSENIESAAEHIYQMNSGLKDM 420 V+ VAS + + + ++Q + ++ GN+ Q+ SG+ Sbjct: 192 VDTVASLNNNVNSFSQQLNTLGSVLSNTKHLNGVGNKLQNLPNLDNIGAGLDTVSGILSA 251 Query: 421 AKASAVITESSATSAEVANSGGKLVHQTVGQMNVIDRSVKEAEQVVRGLET 471 AS +++ + A + A +G +L + +G + A++ +GL T Sbjct: 252 ISASFILSNADADTRTKAAAGVELTTKVLGNVGKGISQYIIAQRAAQGLST 302
>TYPE3OMBPROT#Type III secretion system outer membrane B protein family signature. Length = 538 Score = 28.9 bits (64), Expect = 0.011 Identities = 9/30 (30%), Positives = 15/30 (50%) Query: 73 VPGGWAPDKLRRYPEVLDIIRTMNEQKKPI 102 V GGWA + + + P + + + Q K I Sbjct: 375 VIGGWAAEAIEKNPPCKNDVIYLANQIKEI 404
>LUXSPROTEIN#Bacterial autoinducer-2 (AI-2) production protein LuxS signature. Length = 171 Score = 208 bits (531), Expect = 4e-72 Identities = 56/150 (37%), Positives = 85/150 (56%), Gaps = 4/150 (2%) Query: 2 PSVESFELDHNAVVAPYVRHCGVHKVGTDGVVNKFDIRFCQPNKQAMKPDTIHTLEHLLA 61 P ++SF +DH + AP VR + + FD+RF PNK + IHTLEHL A Sbjct: 1 PLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYA 60 Query: 62 FTIRTHSEKYDHFDIIDISPMGCQTGYYLVVSGEPTAEEIVDLLDATLKEAIDI---TEI 118 +R H D +IIDISPMGC+TG+Y+ + G P+ +++ D A +++ + + +I Sbjct: 61 GFMRNHLNG-DSVEIIDISPMGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVENQNKI 119 Query: 119 PAANEKQCGQAKLHDLEGAKRLMRFWLSQD 148 P NE QCG A +H L+ AK++ + L Sbjct: 120 PELNEYQCGTAAMHSLDEAKQIAKNILEVG 149
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 178 bits (454), Expect = 7e-61 Identities = 63/144 (43%), Positives = 95/144 (65%) Query: 2 SEKLLDAVNKQVANWTVMYVKLHNYHWYVKGKDFFTLHEKFEELYNETATYIDDLAERLL 61 + +++N Q++NW ++Y KLH +HWYVKG FFTLHEKFEELY+ A +D +AERLL Sbjct: 10 QTLVENSLNTQLSNWFLLYSKLHRFHWYVKGPHFFTLHEKFEELYDHAAETVDTIAERLL 69 Query: 62 ALNGKPIGTMTESLKTASVKEAEGNESAEQMVQNIYDDFTVIAEELKSGMDLADEVGDET 121 A+ G+P+ T+ E + AS+ + SA +MVQ + +D+ I+ E K + LA+E D Sbjct: 70 AIGGQPVATVKEYTEHASITDGGNETSASEMVQALVNDYKQISSESKFVIGLAEENQDNA 129 Query: 122 TGDMLLAIHQNIEKHNWMLKAYLG 145 T D+ + + + +EK WML +YLG Sbjct: 130 TADLFVGLIEEVEKQVWMLSSYLG 153
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.5 bits (63), Expect = 0.029 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%) Query: 32 KGDFISFL-GPSGCGKTTLLSILAGL 56 K D+ L G G GK+TL++ L GL Sbjct: 594 KFDYSVVLEGTGGIGKSTLINTLVGL 619
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 66.0 bits (161), Expect = 1e-14 Identities = 27/112 (24%), Positives = 55/112 (49%), Gaps = 1/112 (0%) Query: 3 HILLIEDDNTLFHEMKERLTGWSFAVHGIKDFSRVIREFSEIKPDLVIIDVQLPKFDGFH 62 IL+ +DD + + + L+ + V + + + R + DLV+ DV +P + F Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 63 WCRMIRS-QSNVPILFLSSRDHPADMVMSMQLGADDFIQKPFHFDVLIAKIQ 113 I+ + ++P+L +S+++ + + + GA D++ KPF LI I Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116
>PF06580#Sensor histidine kinase Length = 349 Score = 32.9 bits (75), Expect = 0.002 Identities = 20/142 (14%), Positives = 49/142 (34%), Gaps = 23/142 (16%) Query: 189 KEIKNLQSWC-IQK---GIGFDIQLDSPDVHSDGKWLSFIIRQLLSNAVKY-----SEAD 239 E+ + S+ + + D + +++ L+ N +K+ + Sbjct: 220 DELTVVDSYLQLASIQFEDRLQFENQINPAIMDVQVPPMLVQTLVENGIKHGIAQLPQGG 279 Query: 240 DITVKSYEQNGRVHVDIEDRGIGIEPKDLPRIFEKGFTSTRMRRDHASTGMGLYLAQKAA 299 I +K + NG V +++E+ G + K+ G + R R + + +A Sbjct: 280 KILLKGTKDNGTVTLEVENTG-SLALKNTKESTGTGLQNVRER-------LQMLYGTEA- 330 Query: 300 APLLIRISVRSEPESGTVFTLV 321 +I + + L+ Sbjct: 331 -----QIKLSEKQGKVNAMVLI 347
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 58.3 bits (141), Expect = 2e-11 Identities = 70/370 (18%), Positives = 140/370 (37%), Gaps = 30/370 (8%) Query: 3 RALKILIIGMFINVTGASFLWPLNTIYIHNHLGKSLTVA---GIVLMLNSGASVAGNLCG 59 R L +++ + ++ G + P+ + L S V GI+L L + A Sbjct: 5 RPLIVILSTVALDAVGIGLIMPVLPGLL-RDLVHSNDVTAHYGILLALYALMQFACAPVL 63 Query: 60 GFLFDKIGGFKSIMLGIIITLASLLGLVLFHQWPVYIWLLI--IVGFGSGIVFPASYAMA 117 G L D+ G + +L + + A++ + P L I IV +G + A Sbjct: 64 GALSDRFG--RRPVLLVSLAGAAV-DYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYI 120 Query: 118 GAVWKEGGR-RAFNAIYVAQNAGVAVGSALGGMVAAYSFTYVFLANALLYVLFFLIVFFG 176 + R R F + G+ G LGG++ +S F A A L L FL F Sbjct: 121 ADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFL 180 Query: 177 FRNIKTGNASQVSVLDYEPVSSRTKFTALLILSGGYVLGWIA----------YSQWST-T 225 G + P++S + +++ + +I + + Sbjct: 181 LPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDR 240 Query: 226 VASHTQSIGMPLSLYSVLWTVNGILIVAGQPLMGAVLKKWSGALKTQMVIGFCIFIVSFG 285 +IG+ L+ + +L ++ +I G V + + +++G + Sbjct: 241 FHWDATTIGISLAAFGILHSLAQAMI------TGPVAARLGE--RRALMLGMIADGTGYI 292 Query: 286 VLLSAKQFPMYLTAMVILTVGEMLVWPAVPTIANQLAPKGKEGFYQGFVNSAATGGRMIG 345 +L A + M MV+L G + + PA+ + ++ + ++G QG + + + ++G Sbjct: 293 LLAFATRGWMAFPIMVLLASGGIGM-PALQAMLSRQVDEERQGQLQGSLAALTSLTSIVG 351 Query: 346 PLLGGVLVDQ 355 PLL + Sbjct: 352 PLLFTAIYAA 361 Score = 29.4 bits (66), Expect = 0.025 Identities = 15/82 (18%), Positives = 33/82 (40%) Query: 291 KQFPMYLTAMVILTVGEMLVWPAVPTIANQLAPKGKEGFYQGFVNSAATGGRMIGPLLGG 350 + + L+ + + VG L+ P +P + L + G + + + + G Sbjct: 5 RPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLG 64 Query: 351 VLVDQYGMSVLLLILMVLLVVS 372 L D++G +LL+ + V Sbjct: 65 ALSDRFGRRPVLLVSLAGAAVD 86
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 31.2 bits (70), Expect = 0.020 Identities = 39/174 (22%), Positives = 61/174 (35%), Gaps = 18/174 (10%) Query: 471 DIETLSPTYKLLIGVPG-RSNAFEISRRLGLPEHIIGQAKSEMTAEHNEVDL--MIASLE 527 D ++ + VP SN EI+R P A T E + ++E Sbjct: 993 DTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVE 1052 Query: 528 KSKKRADEELSETESIRKEAEKLHKDLQQQIIELNAQKDKMMEEAEQKSAEKLEAAANEA 587 K+++ A E ++ + KEA+ K Q N E E ++ E E A E Sbjct: 1053 KNEQDATETTAQNREVAKEAKSNVKANTQT----NEVAQSGSETKETQTTETKETATVEK 1108 Query: 588 EQIIRELRSIKQEHRSFKEHELIDAKKRLGDAMPAFEKSKQPERKTEKKRELKP 641 E+ + QE K P E+S+ + + E RE P Sbjct: 1109 EEKAKVETEKTQE-----------VPKVTSQVSPKQEQSETVQPQAEPARENDP 1151
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 31.8 bits (72), Expect = 0.004 Identities = 21/117 (17%), Positives = 41/117 (35%), Gaps = 32/117 (27%) Query: 115 DAGTVTE--FEIITACAFLYFAKRADIDFVIFEAGLGGTFDSTNIVNPLLSVITSIGHDH 172 D G TE E++T F+++ AG G + + + P S G Sbjct: 80 DVGLRTEPNLELLTEMK---------PSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQP 130 Query: 173 MAILGNTIEEIAGQKAGIIKNSIPVITGVNQPEALGVIEAEAEKKQAPYQSLYKTCR 229 +A+ ++ E+A L +++ AE A Y+ ++ + Sbjct: 131 LAMARKSLTEMADL--------------------LN-LQSAAETHLAQYEDFIRSMK 166
>LIPPROTEIN48#Mycoplasma P48 major surface lipoprotein signature. Length = 428 Score = 29.6 bits (66), Expect = 0.029 Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 4/85 (4%) Query: 389 DQEFEQLMAETKEALQKATAKLEQNDLQPIEKPLNIERAKELAKMFRENWSVLTGEEKRQ 448 D+ F Q E +A+ K T ++ +E N E A A VL G + +Q Sbjct: 75 DKSFNQSAFEALKAINKQTGI----EINNVEPSSNFESAYNSALSAGHKIWVLNGFKHQQ 130 Query: 449 TVQELIKHIEFEKKDNKAKILDIHF 473 ++++ I E + N+ KI+ I F Sbjct: 131 SIKQYIDAHREELERNQIKIIGIDF 155
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 27.1 bits (60), Expect = 0.004 Identities = 7/17 (41%), Positives = 9/17 (52%) Query: 16 KCPHCKHLIAYDDLIDV 32 CPHC H I + I + Sbjct: 73 CCPHCNHPITALENIPL 89
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 492 bits (1269), Expect = e-178 Identities = 191/338 (56%), Positives = 250/338 (73%), Gaps = 5/338 (1%) Query: 1 MFGIGTRDLGIDLGTANTLVFVKGKGIVVREPSVVALQTD----TKSIVAVGNDAKNMIG 56 G+ + DL IDLGTANTL++VKG+GIV+ EPSVVA++ D KS+ AVG+DAK M+G Sbjct: 5 FRGMFSNDLSIDLGTANTLIYVKGQGIVLNEPSVVAIRQDRAGSPKSVAAVGHDAKQMLG 64 Query: 57 RTPGNVVALRPMKDGVIADYETTATMMKYYINQAVKNKGLFARKPYVMVCVPSGITAVEE 116 RTPGN+ A+RPMKDGVIAD+ T M++++I Q V + P V+VCVP G T VE Sbjct: 65 RTPGNIAAIRPMKDGVIADFFVTEKMLQHFIKQ-VHSNSFMRPSPRVLVCVPVGATQVER 123 Query: 117 RAVIDATRQAGARDAYPIEEPFAAAIGANLPVWEPTGSMVVDIGGGTTEVAIISLGGIVT 176 RA+ ++ + AGAR+ + IEEP AAAIGA LPV E TGSMVVDIGGGTTEVA+ISL G+V Sbjct: 124 RAIRESAQGAGAREVFLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNGVVY 183 Query: 177 SQSIRVAGDEMDDSIISYIRKTYNLMIGDRTAEAIKMEIGSAETGEENASMEIRGRDLLT 236 S S+R+ GD D++II+Y+R+ Y +IG+ TAE IK EIGSA G+E +E+RGR+L Sbjct: 184 SSSVRIGGDRFDEAIINYVRRNYGSLIGEATAERIKHEIGSAYPGDEVREIEVRGRNLAE 243 Query: 237 GLPKTIEITGTEIANALRDTVLSIVDAVKSTLEKTPPELAADIMDRGIVLTGGGALLRNL 296 G+P+ + EI AL++ + IV AV LE+ PPELA+DI +RG+VLTGGGALLRNL Sbjct: 244 GVPRGFTLNSNEILEALQEPLTGIVSAVMVALEQCPPELASDISERGMVLTGGGALLRNL 303 Query: 297 DKVISDETKMPVLIAEDPLDCVAIGTGKALEHIHLFKG 334 D+++ +ET +PV++AEDPL CVA G GKALE I + G Sbjct: 304 DRLLMEETGIPVVVAEDPLTCVARGGGKALEMIDMHGG 341
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 32.0 bits (72), Expect = 0.003 Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 9/75 (12%) Query: 117 ATVIARNPDQWYKQIMINKGTKQKVAKDMAVTNEKGALVGKIKSSGLNSFTSAVQL--LS 174 A V Q ++ NKG A ++ V ++ +G + + + + S Sbjct: 26 ALVRDDVDYQIFRDFAENKGKFSVGATNVLVKDKNNKDLG-------TALPNGIPMIDFS 78 Query: 175 DVDRNNRVATKISGK 189 VD + R+AT I+ + Sbjct: 79 VVDVDKRIATLINPQ 93
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 39.9 bits (93), Expect = 3e-07 Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 7/60 (11%) Query: 1 MLRLKNQDGFTLIEMLIVLFIVSILLLITIPNVTKHNQSIQHKGCEGLQNMVKAQVTAYE 60 M Q GFTL+E+++V+ I+ +L + +PN+ + + + + + + A E Sbjct: 1 MRATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKE-------KADKQKAVSDIVALE 53
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 38.8 bits (90), Expect = 2e-06 Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 3/56 (5%) Query: 8 ENGFTLLESLIVLSLASVLLT-VLFTTVPPAYTHLAVRQKTEQLQKDIQLAQETAI 62 + GFTLLE +++L L V VL A Q + + ++ Q+ + Sbjct: 3 QRGFTLLEMMLILLLMGVSAGMVLLAFPASRDDSAA--QTLARFEAQLRFVQQRGL 56
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 29.8 bits (67), Expect = 0.012 Identities = 17/64 (26%), Positives = 27/64 (42%) Query: 399 DIAKRLLDFGYHPPTVYFPLNVEESIMIEPTETESKETLDAFIDAMIQIAREAEESPEIV 458 IA+RLL G P SI ET + E + A ++ QI+ E++ + Sbjct: 63 TIAERLLAIGGQPVATVKEYTEHASITDGGNETSASEMVQALVNDYKQISSESKFVIGLA 122 Query: 459 QEAP 462 +E Sbjct: 123 EENQ 126
>PF06580#Sensor histidine kinase Length = 349 Score = 36.4 bits (84), Expect = 2e-05 Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Query: 29 QLDPTMDELTEIKTVVSEAVTNAIIHGYEENCD-GKVYISVTLEDHVVYLTIRDEG 83 Q++P + ++ +V V N I HG + GK+ + T ++ V L + + G Sbjct: 245 QINPAIMDVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTG 300
>PERTACTIN#Pertactin signature. Length = 922 Score = 28.1 bits (62), Expect = 0.013 Identities = 27/74 (36%), Positives = 31/74 (41%), Gaps = 8/74 (10%) Query: 2 QWRTQPYQNMYQQPAGYFYPQQIQPLQQPYPQQIQPLQQPPYHQQGQYPQQFYPNQEYGH 61 ++R N G P +P QP PQ QPP Q Q PQ P Q Sbjct: 549 RYRLAANGNGQWSLVGAKAPPAPKPAPQPGPQPGPQPPQPP--QPPQPPQPPQPPQ---- 602 Query: 62 MQQPFAPAP-PQAG 74 +QP APAP P AG Sbjct: 603 -RQPEAPAPQPPAG 615 Score = 27.4 bits (60), Expect = 0.023 Identities = 15/44 (34%), Positives = 18/44 (40%) Query: 55 PNQEYGHMQQPFAPAPPQAGMPGGQPGFVNPYPVPRPNQQQSSQ 98 N ++ + PAP A PG QPG P P P Q Q Sbjct: 556 GNGQWSLVGAKAPPAPKPAPQPGPQPGPQPPQPPQPPQPPQPPQ 599
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 28.6 bits (64), Expect = 0.011 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 20/68 (29%) Query: 56 DIVSPVDGEVIQLFHTKHAVGIRTLSGAELLIHVGLDTVNMNGEGFEAHVKEGDKVKTGD 115 +IV+ +G++ +K I+ + + V E VKEG+ V+ GD Sbjct: 81 EIVATANGKLTHSGRSKE---IKPIENS---------IVK------EIIVKEGESVRKGD 122 Query: 116 LLLTCRLD 123 +LL +L Sbjct: 123 VLL--KLT 128
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 30.9 bits (70), Expect = 0.009 Identities = 16/88 (18%), Positives = 32/88 (36%), Gaps = 12/88 (13%) Query: 7 RLSAVILLLIIAAVP-YIDDAAKAAEQKNTLQKELEHILDEEPALKGASAGVSVRSAKTG 65 R + ++ ++A +P + + + EQ + +L G+ +G Sbjct: 2 RYIRLCIISLLATLPLAVHASPQPLEQIKLSESQL-----------SGRVGMIEMDLASG 50 Query: 66 EVLFGSREDMRLRPASLMKLLTASAALS 93 L R D R S K++ A L+ Sbjct: 51 RTLTAWRADERFPMMSTFKVVLCGAVLA 78
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 31.9 bits (72), Expect = 0.028 Identities = 22/103 (21%), Positives = 39/103 (37%), Gaps = 9/103 (8%) Query: 1973 ARLIALDELPLTANGKLDEKALPQPELNDSLGDDISLRNETEEMMADIWEELLG--VEGL 2030 A + D L LD+ ++ + + T E + ELL E + Sbjct: 198 AFTVMTDSL-------LDQLQNAPADVQKTSANTGKKNVFTCENIRKQIAELLQETPEDI 250 Query: 2031 GPNAHFFHLGGDSIKALQVCARLKQQGYETTVRELFEHQTLGE 2073 G DS++ + + + +++G E T EL E T+ E Sbjct: 251 TDQEDLLDRGLDSVRIMTLVEQWRREGAEVTFVELAERPTIEE 293
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 26.3 bits (58), Expect = 0.008 Identities = 9/23 (39%), Positives = 15/23 (65%) Query: 47 GTVKEVKKSEGDFTDEGEVLIEL 69 VKE+ EG+ +G+VL++L Sbjct: 105 SIVKEIIVKEGESVRKGDVLLKL 127
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 66.3 bits (162), Expect = 2e-13 Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 2/80 (2%) Query: 787 ADLEDGDILVTSYTDPSWTPLFVS--IKGLVTEVGGLMTHGAVIAREYGLPAVVGVENAT 844 A + + +++ PS T +KG T++GG +H A+++R +PAVVG + T Sbjct: 151 ATIAEETVIIAEDLTPSDTAQLNKQFVKGFATDIGGRTSHSAIMSRSLEIPAVVGTKEVT 210 Query: 845 QLIKDGQRIRVHGTEGSIEI 864 + I+ G + V G EG + + Sbjct: 211 EKIQHGDMVIVDGIEGIVIV 230 Score = 30.9 bits (70), Expect = 0.022 Identities = 41/240 (17%), Positives = 89/240 (37%), Gaps = 63/240 (26%) Query: 440 IKSSQASIEVLKQNIQTKSGY------DLFRFILED---IQELKKILFNPKSSVM--IRT 488 ++ S+ + +K + G +L+D + +K + N + + ++ Sbjct: 48 LEKSKEELRAIKDQTEASMGADKAEIFAAHLLVLDDPELVDGIKGKIENEQMNAEYALKE 107 Query: 489 AMDASLWINEKM-NEWLGEKNAAD--TLSQSVPHNITSEMGLALLDVADVIRPY------ 539 D + + E M NE++ E+ AAD +S+ V ++ +G+ +A + Sbjct: 108 VSDMFVSMFESMDNEYMKER-AADIRDVSKRVLGHL---IGVETGSLATIAEETVIIAED 163 Query: 540 --PEVIAYLENVKDDHFLDGLVTFEGGQETHDAIYSYLNKYGMRCAGEIDMTRTRWSEKP 597 P A L + F+ G T GG+ +H AI M+R+ E P Sbjct: 164 LTPSDTAQL----NKQFVKGFATDIGGRTSHSAI----------------MSRS--LEIP 201 Query: 598 TAL-VPMILNNLKN--------------FEPNASQRKFEQGRQEALKKEQELLDRLKQLP 642 + + +++ P + K + ++ A +K+++ +L P Sbjct: 202 AVVGTKEVTEKIQHGDMVIVDGIEGIVIVNPTEEEVKAYEEKRAAFEKQKQEWAKLVGEP 261
>BCTLIPOCALIN#Bacterial lipocalin signature. Length = 171 Score = 30.4 bits (68), Expect = 0.010 Identities = 16/78 (20%), Positives = 36/78 (46%), Gaps = 16/78 (20%) Query: 75 ISYSGQMHG-LVLLDQDRQVLRHAI--------LWNDTRTTPQCSRITETFGDRLLDITK 125 +S+ G +G V+ + DR+ +A LW +RT + D+ ++++K Sbjct: 101 VSFFGPFYGSYVVFELDRENYSYAFVSGPNTEYLWLLSRT----PTVERGILDKFIEMSK 156 Query: 126 NRVLEGFTLPKMLWVKEH 143 GF ++++V++ Sbjct: 157 E---RGFDTNRLIYVQQQ 171
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 37.9 bits (88), Expect = 7e-05 Identities = 44/303 (14%), Positives = 97/303 (32%), Gaps = 32/303 (10%) Query: 47 AAAAGTMFLVVRIIDALADPFIGTIVDRTNSRFGRFRPYLLFGAFPFVILAILCFTTPDF 106 A G + + ++ P +G + DR FGR RP LL L D+ Sbjct: 42 TAHYGILLALYALMQFACAPVLGALSDR----FGR-RPVLLVS---------LAGAAVDY 87 Query: 107 SDMGKLIYAYITYVGLSLTYTMINVPYGALTSAMTRNNQEVVSITSVRMLFANLGGLVVA 166 + M + ++ Y+G ++ GA + ++ F + Sbjct: 88 AIMATAPFLWVLYIG-----RIVAGITGATGAVAGAYIADITDGDERARHFGFMSACFGF 142 Query: 167 FFV--PLLAAYLSDNSGSESLGWQLTMGIMGVIGGCLLIFCFKSTKERVTLQKSEEKIKF 224 V P+L + S + + F + + ++ + + Sbjct: 143 GMVAGPVLGGLMGGFSPHAPF---FAAAALNGLNFLTGCFLLPESHKG---ERRPLRREA 196 Query: 225 SDIFEQFRVNRPLVVLSIFFIIIFGVNSISNSVGIYYVTYNLER-----ADLVKWYGLLG 279 + FR R + V++ + F + + +V + +R + G Sbjct: 197 LNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFG 256 Query: 280 SLPALVILPFIPKLHQLLGKKKLLNYALLLNMIGLLALLFVPPSNVYLILVCRLIAAAGS 339 L +L + LG+++ L ++ + G + L F + ++ L + Sbjct: 257 ILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIG 316 Query: 340 LTA 342 + A Sbjct: 317 MPA 319
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 34.8 bits (80), Expect = 5e-04 Identities = 37/148 (25%), Positives = 60/148 (40%), Gaps = 37/148 (25%) Query: 32 AEYQAALQKNEAKHSILKEIEKEMNTLVG----MEEMKRNIKEIYAWIFVNQKRAEQGLK 87 AL + + + S L++ ++ LVG M+E+ R + + Sbjct: 113 GIIGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLA-----------------R 155 Query: 88 VGKQALHMMFKGNPGTGKTTVARLI-------GKLFFEMN--VLSKGHLIEAERADLVGE 138 + + L +M G GTGK VAR + F +N + + LIE+E L G Sbjct: 156 LMQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPR-DLIESE---LFGH 211 Query: 139 YIG--HTAQKTRD-LIKKSLGGILFIDE 163 G AQ +++ GG LF+DE Sbjct: 212 EKGAFTGAQTRSTGRFEQAEGGTLFLDE 239
>BCTERIALGSPC#Bacterial general secretion pathway protein C signature. Length = 272 Score = 25.3 bits (55), Expect = 0.024 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 9/39 (23%) Query: 26 LNGFQLRG---------QVKGFDNFTVLLETEGKQQLIY 55 LNG LR ++ NFT+ +E +G++Q IY Sbjct: 227 LNGLDLRDAEQAKKAMERMADVHNFTLTVERDGQRQDIY 265
>SUBTILISIN#Subtilisin serine protease family (S8) signature. Length = 326 Score = 235 bits (602), Expect = 1e-76 Identities = 107/320 (33%), Positives = 144/320 (45%), Gaps = 59/320 (18%) Query: 133 HAKEVTRNGTLLTGKGVTVAVIDTGI-YQHPDLEGRVIGFADFVNQKTE----PYDDNGH 187 A V G+GV VAV+DTG HPDL+ R+IG +F + D NGH Sbjct: 30 QAPAVWNQTR---GRGVKVAVLDTGCDADHPDLKARIIGGRNFTDDDEGDPEIFKDYNGH 86 Query: 188 GTHCAGDIASSGASSSGKYQGPAPEADLIGVKVLNKSGSGTLADIIEGVEWCIQYNKEHT 247 GTH AG IA++ + G APEADL+ +KVLNK GSG II+G+ + I+ Sbjct: 87 GTHVAGTIAATENENGV--VGVAPEADLLIIKVLNKQGSGQYDWIIQGIYYAIEQK---- 140 Query: 248 KNPIRIISMSLGGDALRYDKETDDPLVKAVEEAWNEGIVVCVAAGNSGPEA---QTISSP 304 + IISMSLGG E L +AV++A I+V AAGN G + P Sbjct: 141 ---VDIISMSLGGP------EDVPELHEAVKKAVASQILVMCAAGNEGDGDDRTDELGYP 191 Query: 305 GVSEKVITVGAYDDNDTAGNEDDTVASFSSRGPTVYGKEKPDILAPGVDIVSLRSPRSYL 364 G +VI+VGA + + + FS+ + D++APG DI Sbjct: 192 GCYNEVISVGAINFDRH-------ASEFSNSNN------EVDLVAPGEDI---------- 228 Query: 365 DKLQKSNRVGSLYFSLSGTSMATPICAGIAALILQQNPQ-----LSPDEVKTLIKQSPDQ 419 S G Y + SGTSMATP AG ALI Q L+ E+ + + Sbjct: 229 ----LSTVPGGKYATFSGTSMATPHVAGALALIKQLANASFERDLTEPELYAQLIKRTIP 284 Query: 420 WTNEDPNIYGAGAVNAENAV 439 N P + G G + Sbjct: 285 LGNS-PKMEGNGLLYLTAVE 303
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 89.5 bits (222), Expect = 1e-20 Identities = 73/337 (21%), Positives = 120/337 (35%), Gaps = 90/337 (26%) Query: 224 IMGHVDHGKTTLLDSI-----RKTKVVEGEAG-------------GITQHIGAYQIEENG 265 ++ HVD GKTTL +S+ T++ + G GIT G + Sbjct: 8 VLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWEN 67 Query: 266 KKITFLDTPGHAAFTTMRARGAEVTDITILVVAADDGVMPQTVEAINHAKAAEVPIIVAV 325 K+ +DTPGH F R V D IL+++A DGV QT + + +P I + Sbjct: 68 TKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFI 127 Query: 326 NKVDKESANPDRVMQE-----------LTEYGLVP----------EAWG----------- 353 NK+D+ + V Q+ + L P E W Sbjct: 128 NKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEGNDDLLE 187 Query: 354 ----GETI-----------------FVPL---SALTGKGIDELVEMI--LLVSEVEELKA 387 G+++ P+ SA GID L+E+I S ++ Sbjct: 188 KYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSSTHRGQS 247 Query: 388 NPNRQAKGTVIEAELDKGRGSVATLLVQTGTLNVGDPIVVGNT----FGRVRAMVNDLGR 443 G V + E + R +A + + +G L++ D + + + +N Sbjct: 248 EL----CGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKIKITEMYTSINGELC 303 Query: 444 RVKTAGPS----TPVEITGLNDVPQAGDQFLVFKDEK 476 ++ A E LN V GD L+ + E+ Sbjct: 304 KIDKAYSGEIVILQNEFLKLNSV--LGDTKLLPQRER 338
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 27.5 bits (61), Expect = 0.048 Identities = 15/112 (13%), Positives = 29/112 (25%), Gaps = 13/112 (11%) Query: 101 VWLLVTVLLGAGFLGVEIYEFMHYTHEFGFTITSSALGSAF----------YTLVGTHGA 150 +L V + F G +F TI S+ S TL+ A Sbjct: 446 AMVLSAVFIPMAFFGGSTGAIYR---QFSITIVSAMALSVLVALILTPALCATLLKPVSA 502 Query: 151 HVAFGLLWISALMIRNAKRGLSLYNAPKYYVASLYWHFIDVVWVFIFTVVYL 202 ++ Y + ++ + + + +V L Sbjct: 503 EHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVL 554
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 177 bits (450), Expect = 5e-50 Identities = 95/453 (20%), Positives = 183/453 (40%), Gaps = 99/453 (21%) Query: 7 LRNIAIIAHVDHGKTTLVDQLLHQAGTFRANENIAE-----RAMDSNDLERERGITILAK 61 + NI ++AHVD GKTTL + LL+ +G A + D+ LER+RGITI Sbjct: 3 IINIGVLAHVDAGKTTLTESLLYNSG---AITELGSVDKGTTRTDNTLLERQRGITIQTG 59 Query: 62 NTAINYKDTRINILDTPGHADFGGEVERIMKMVDGVLLVVDAYEGCMPQTRFVLKKALEQ 121 T+ +++T++NI+DTPGH DF EV R + ++DG +L++ A +G QTR + + Sbjct: 60 ITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKM 119 Query: 122 NLNPVVVVNKIDRDFARPEEVIDEVLDLF------------------------------- 150 + + +NKID++ V ++ + Sbjct: 120 GIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVI 179 Query: 151 -------------IELDANEQQLE----------FPVVYASAINGTASLDPKKQDENMES 187 L+A E + E FPV + SA N +++ Sbjct: 180 EGNDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNN----------IGIDN 229 Query: 188 LYETILEHVPAPVDNAEEPLQFQVALLDYNDYVGRIGIGRVFRGTMKVGQQVSLMKLDGT 247 L E I + + L +V ++Y++ R+ R++ G + + V + Sbjct: 230 LIEVITNKFYSSTHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRI----SE 285 Query: 248 VKSFRVTKIFGFQGLKRVEIEEARAGDLVAVSGMEDINVGETVCPADHHEPLPVLRIDEP 307 + ++T+++ + +I++A +G++V + E + + + + P Sbjct: 286 KEKIKITEMYTSINGELCKIDKAYSGEIVILQN-EFLKLNSVLGDTKLLPQRERIENPLP 344 Query: 308 TLQMTFVVNNSPFAGREGKYVTARKIEER------LNAQLQTDVSLRVEPTASPDAWVVS 361 LQ T V K ++R L +D LR ++ ++S Sbjct: 345 LLQTT---------------VEPSKPQQREMLLDALLEISDSDPLLRYYVDSATHEIILS 389 Query: 362 GRGELHLSILIENMRRE-GYELQVSKPEVIIKE 393 G++ + + ++ + E+++ +P VI E Sbjct: 390 FLGKVQMEVTCALLQEKYHVEIEIKEPTVIYME 422 Score = 42.5 bits (100), Expect = 4e-06 Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 1/77 (1%) Query: 400 EPVERVQIDVPEEHTGSVMESMGARKGEMLDMINNGNGQVRLIFTVPSRGLIGYSTEFLS 459 EP +I P+E+ ++D N +V L +P+R + Y ++ Sbjct: 537 EPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQLKNN-EVILSGEIPARCIQEYRSDLTF 595 Query: 460 LTRGFGILNHTFDSYQP 476 T G + Y Sbjct: 596 FTNGRSVCLTELKGYHV 612
>THERMOLYSIN#Thermolysin metalloprotease (M4) family signature. Length = 544 Score = 515 bits (1328), Expect = 0.0 Identities = 209/554 (37%), Positives = 286/554 (51%), Gaps = 49/554 (8%) Query: 5 KKLSVAVAASFMSLTISLPGVQAAENPQLKENLTNFVPKHSLVQSELPSVSDKAIKQYLK 64 K ++ A ++ P +A+ + N + + S L S + + +YL Sbjct: 2 NKRAMLGAIGLAFGLMAWPFGASAKGKSMVWN-EQWKTPSFVSGSLLGRCSQELVYRYLD 60 Query: 65 QNGKVFK--GNPSERLKLIDHTTDDLGYKHFRYVPVVNGVPVKDSQVIIHVDKSNNVYAI 122 Q F+ G ERL LI + D+LG+ R+ + + ++ HV+ + ++ Sbjct: 61 QEKNTFQLGGQARERLSLIGNKLDELGHTVMRFEQAIAASLCMGAVLVAHVN-DGELSSL 119 Query: 123 NGELNNDASAKTANS-KKLSANQALDHAFKAIGKSPEAVSNGNVANKN-KAELKAAATKD 180 +G L + +T + +S QA A + + V+ A + K + Sbjct: 120 SGTLIPNLDKRTLKTEAAISIQQAEMIAKQDVADR---VTKERPAAEEGKPTRLVIYPDE 176 Query: 181 GKYRLAYDVTIRYIEPEPANWEVTVDAETGKVLKKQNKVEHAAATGTGTTLKGKTVSLNI 240 RLAY+V +R++ P P NW +DA GKVL K N+++ A G TV + Sbjct: 177 ETPRLAYEVNVRFLTPVPGNWIYMIDAADGKVLNKWNQMDEAKPGGAQPVAGTSTVGVGR 236 Query: 241 -------------SSESGKYVMRDLSKPTGTQIITYDLQNRQYNLPGTLVSSTTNQFTTS 287 SS G Y ++D ++ G+ I TYD +NR LPG+L + NQF S Sbjct: 237 GVLGDQKYINTTYSSYYGYYYLQDNTR--GSGIFTYDGRNRT-VLPGSLWADGDNQFFAS 293 Query: 288 SQRAAVDAHYNLGKVYDYFYQTFKRNSYDNKGGKIVSSVHYGSKYNNAAWIGDQMIYGDG 347 AAVDAHY G VYDY+ R SYD I S+VHYG YNNA W G QM+YGDG Sbjct: 294 YDAAAVDAHYYAGVVYDYYKNVHGRLSYDGSNAAIRSTVHYGRGYNNAFWNGSQMVYGDG 353 Query: 348 DGSFFSPLSGSMDVTAHEMTHGVTQETANLNYENQPGALNESFSDVFG-----YFNDTED 402 DG F P SG +DV HE+TH VT TA L Y+N+ GA+NE+ SD+FG Y N D Sbjct: 354 DGQTFLPFSGGIDVVGHELTHAVTDYTAGLVYQNESGAINEAMSDIFGTLVEFYANRNPD 413 Query: 403 WDIGEDI---TVSQPALRSLSTPTKYGQPDHYKNYQNLPNTDAGDYGGVHTNSGIPNKAA 459 W+IGEDI V+ ALRS+S P KYG PDHY T D GGVHTNSGI NKAA Sbjct: 414 WEIGEDIYTPGVAGDALRSMSDPAKYGDPDHYSKRY----TGTQDNGGVHTNSGIINKAA 469 Query: 460 Y----------NTITKIGVKKAEQIYYRALTVYLTPSSNFKDAKAALIQSARDLYG--SQ 507 Y ++T IG K +I+YRAL YLTP+SNF +AA +Q+A DLYG SQ Sbjct: 470 YLLSQGGVHYGVSVTGIGRDKMGKIFYRALVYYLTPTSNFSQLRAACVQAAADLYGSTSQ 529 Query: 508 DAASVEAAWNAVGL 521 + SV+ A+NAVG+ Sbjct: 530 EVNSVKQAFNAVGV 543
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 55.1 bits (133), Expect = 5e-10 Identities = 38/135 (28%), Positives = 59/135 (43%), Gaps = 28/135 (20%) Query: 20 DTVIKNGKIMDVFNQEWISADIAITGGVIVGLGEY--------------EGEEVIDAEGQ 65 DTVI N I+D + + ADI + G I +G+ G EVI EG+ Sbjct: 69 DTVITNALILD--HWGIVKADIGLKDGRIAAIGKAGNPDMQPGVTIIVGPGTEVIAGEGK 126 Query: 66 MIVPGFIDGHVHIESSMVTPIEFAKAVLPHGVTTVI---TDPHEIANVS----GAKGISF 118 ++ G +D H+H + P + + L G+T ++ T P + G I+ Sbjct: 127 IVTAGGMDSHIH----FICP-QQIEEALMSGLTCMLGGGTGPAHGTLATTCTPGPWHIAR 181 Query: 119 MIEQAKKAPLNIRFM 133 MIE A P+N+ F Sbjct: 182 MIEAADAFPMNLAFA 196
>PF06580#Sensor histidine kinase Length = 349 Score = 43.3 bits (102), Expect = 1e-06 Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 16/99 (16%) Query: 327 QVFI-NIIKNAIEAMPDGGNIHIYTKRDEEYAVISIQDEGNGMSKEKLENIGKPFFSTKD 385 Q + N IK+ I +P GG I + +D + +++ G+ K E Sbjct: 261 QTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKE----------- 309 Query: 386 QGTGLGLPIC---LRILKEHNGKLNIKSKNGEGSTFQVI 421 TG GL L++L ++ + K G+ + +I Sbjct: 310 -STGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLI 347
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 454 bits (1170), Expect = e-163 Identities = 174/332 (52%), Positives = 231/332 (69%), Gaps = 6/332 (1%) Query: 1 MFQSTEIGIDLGTANILVYSKNKGIILNEPSVVAVDT----TTKAVLAIGTDAKSMIGKT 56 MF S ++ IDLGTAN L+Y K +GI+LNEPSVVA+ + K+V A+G DAK M+G+T Sbjct: 8 MF-SNDLSIDLGTANTLIYVKGQGIVLNEPSVVAIRQDRAGSPKSVAAVGHDAKQMLGRT 66 Query: 57 PGKIVAVRPMKDGVIADYDMTTDLLKHIMKKAGKKIGMTFRKPNVVVCTPSGSTAVERRA 116 PG I A+RPMKDGVIAD+ +T +L+H +K+ M P V+VC P G+T VERRA Sbjct: 67 PGNIAAIRPMKDGVIADFFVTEKMLQHFIKQVHSNSFM-RPSPRVLVCVPVGATQVERRA 125 Query: 117 ISDAVKNCGAKNVHLIEEPVAAAIGADLPVDEPVANVVVDIGGGTTEVAIISFGGVVSCH 176 I ++ + GA+ V LIEEP+AAAIGA LPV E ++VVDIGGGTTEVA+IS GVV Sbjct: 126 IRESAQGAGAREVFLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNGVVYSS 185 Query: 177 SIRIGGDQLDEDIASFVRKKYNLLIGERTAEQVKMEIGFALIEHVPETMEIRGRDLVTGL 236 S+RIGGD+ DE I ++VR+ Y LIGE TAE++K EIG A +E+RGR+L G+ Sbjct: 186 SVRIGGDRFDEAIINYVRRNYGSLIGEATAERIKHEIGSAYPGDEVREIEVRGRNLAEGV 245 Query: 237 PKTIRLQSNEIQHAMRESLLHILEAIRATLEDCPPELSGDIVDRGVVLTGGGSLLNGMKE 296 P+ L SNEI A++E L I+ A+ LE CPPEL+ DI +RG+VLTGGG+LL + Sbjct: 246 PRGFTLNSNEILEALQEPLTGIVSAVMVALEQCPPELASDISERGMVLTGGGALLRNLDR 305 Query: 297 WLTDEIVVPVHLAANPLESVAIGTGRSLDVID 328 L +E +PV +A +PL VA G G++L++ID Sbjct: 306 LLMEETGIPVVVAEDPLTCVARGGGKALEMID 337
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 28.6 bits (64), Expect = 0.037 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 3/44 (6%) Query: 216 GLLTAAAVLCAAGIFGIFTNANEVIS--ERGWPALILLLGAAFH 257 G+ + + A F + N E I+ ERGW IL+L FH Sbjct: 42 GIERIWSAIGATDGFAL-LNLEEAITLRERGWKGPILMLEGFFH 84
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 31.3 bits (71), Expect = 0.012 Identities = 32/194 (16%), Positives = 60/194 (30%), Gaps = 64/194 (32%) Query: 395 EQVKMKELEEHLHQR--VIGQEKAVKKVAKAVRRSRAGLKSKNRPVGSFLFVGPTGVGKT 452 + + +LE+ ++G+ A++++ + + R L + + + G +G GK Sbjct: 122 PKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLAR----LMQTDLTL---MITGESGTGKE 174 Query: 453 -------ELSK-----------------TLADELFGTKDSIIRLDMSEYMEKHAVSKIIG 488 + K + ELFG EK A + Sbjct: 175 LVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGH-------------EKGAFTGAQT 221 Query: 489 SPPGYVGHDEAGQLTEKVRRNPYSIVLLDEIEKAHPDVQHMFLQIMEDG---RLTDSQGR 545 G E G L LDEI D Q L++++ G + Sbjct: 222 RSTGRFEQAEGGTL------------FLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPI 269 Query: 546 TVSFKDTVLIMTSN 559 D ++ +N Sbjct: 270 RS---DVRIVAATN 280 Score = 30.6 bits (69), Expect = 0.024 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 2/45 (4%) Query: 89 IDPVIGRDNEVARVIEILNR-RNKNNPVLI-GEPGVGKTAIAEGL 131 P++GR + + +L R + ++I GE G GK +A L Sbjct: 136 GMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARAL 180
>TATBPROTEIN#Bacterial sec-independent translocation TatB protein signature. Length = 171 Score = 31.9 bits (72), Expect = 4e-05 Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Query: 2 IGPGSLAVIGVVAVIIFGPKKLPELGKAAGDTLREFKNATKGLAGE-EEEKKKEE 55 IG L ++ ++ +++ GP++LP K +R ++ + E +E K +E Sbjct: 4 IGFSELLLVFIIGLVVLGPQRLPVAVKTVAGWIRALRSLATTVQNELTQELKLQE 58
>PF05272#Virulence-associated E family protein Length = 892 Score = 31.6 bits (71), Expect = 0.011 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 5/55 (9%) Query: 358 LVGPNGIGKSTLLKTIMNTLSPESGSITYGSN-----VTIGYYDQEQAELTSSKR 407 L G GIGKSTL+ T++ G+ G E +E+T+ +R Sbjct: 601 LEGTGGIGKSTLINTLVGLDFFSDTHFDIGTGKDSYEQIAGIVAYELSEMTAFRR 655
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 52.3 bits (125), Expect = 3e-11 Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 8/97 (8%) Query: 53 DGCLAGYCGI---WIIIDDAQITNIAIKPEYRGQSLGEALFCSAIELCREKKARRLSLEV 109 + G I W A I +IA+ +YR + +G AL AIE +E L LE Sbjct: 73 ENNCIGRIKIRSNWN--GYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLET 130 Query: 110 RVSNHPAQSLYKKFGLQAGGIRKQYYTD---NGEDAL 143 + N A Y K G + Y++ E A+ Sbjct: 131 QDINISACHFYAKHHFIIGAVDTMLYSNFPTANEIAI 167
>PF05272#Virulence-associated E family protein Length = 892 Score = 27.7 bits (61), Expect = 0.026 Identities = 10/31 (32%), Positives = 14/31 (45%) Query: 16 AVAKLAASLAKPGDILTLEGDLGAGKTTFTK 46 VA++ K + LEG G GK+T Sbjct: 584 HVARVMEPGCKFDYSVVLEGTGGIGKSTLIN 614
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 44.0 bits (104), Expect = 8e-07 Identities = 42/186 (22%), Positives = 67/186 (36%), Gaps = 10/186 (5%) Query: 13 TIILVSTFGGLLFGYDTGVINGALPFMAEADQL-NLTALTEGMVASSLLLGAAIGAVFGG 71 +IL + L G+I LP + N G++ + L A G Sbjct: 8 IVILSTVA---LDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLG 64 Query: 72 RLSDYNGRRKNILILAVLFFAATLGCTLAPNVSVMIISRFLLGLAVGGASVTVPAYLAEM 131 LSD GRR +L+ AP + V+ I R + G+ G AY+A++ Sbjct: 65 ALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGIT-GATGAVAGAYIADI 123 Query: 132 SPAESRGRMVTQNELMIVTGQLLAFTCNAIIGNVLGDTSHAWRYMLVIAALPAVFLFFGM 191 + + R R G ++G ++G S + AAL + G Sbjct: 124 TDGDERARHFGFMSACFGFG----MVAGPVLGGLMGGFSPHAPFF-AAAALNGLNFLTGC 178 Query: 192 LKVPES 197 +PES Sbjct: 179 FLLPES 184
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 60.6 bits (147), Expect = 2e-12 Identities = 77/385 (20%), Positives = 148/385 (38%), Gaps = 30/385 (7%) Query: 13 IAVGLVELIVGGILPQIASDLDISIVSAGQLISVFALGYAVSGPLLLAVTAKAERKRLYL 72 + +GL+ ++ G+L + D++ G L++++AL P+L A++ + R+ + L Sbjct: 19 VGIGLIMPVLPGLLRDLVHSNDVT-AHYGILLALYALMQFACAPVLGALSDRFGRRPVLL 77 Query: 73 IALFIFFLSNLVAYFSPNFAVLMVSRVLASMSTGLIVVLSLTIAPKIVAPEYRARAIGII 132 ++L + + +P VL + R++A ++ V IA I + RAR G + Sbjct: 78 VSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIA-DITDGDERARHFGFM 136 Query: 133 FMGFSSAIALGVPVGIIISNAFGWRVLFLGIGVLSLVSMLIISVFFEKIPAEKMIPFREQ 192 F + G +G ++ F F L+ ++ L + + P R + Sbjct: 137 SACFGFGMVAGPVLGGLMG-GFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRRE 195 Query: 193 IKTIGTA-------KIASAHLVTLFT--LAGHYTLYAYFAPFLERTLHLSSVWVSVCYFL 243 + + +A + F L G A + F E H + + + Sbjct: 196 ALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPA-ALWVIFGEDRFHWDATTIGISLAA 254 Query: 244 FGL-----SAVCGGPFGGWLYDRLGAFKSIMLVTVSFALILFILPLTTVSLIIFLPAMVI 298 FG+ A+ GP L +R ++ + L+ F + P MV+ Sbjct: 255 FGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFA-----TRGWMAFPIMVL 309 Query: 299 WGLLSWSLAPAQQSYLIKIAPESSDIQQSFNTSALQIGIALGSAIGGGVIGQTGSVTATA 358 + PA Q+ L + + +Q +L +L S +G + + + T Sbjct: 310 LASGGIGM-PALQAMLSRQV---DEERQGQLQGSLAALTSLTSIVGPLLFTAIYAASITT 365 Query: 359 WCGGLIVIIAVALAVFSLTRPALKR 383 W G I AL + L PAL+R Sbjct: 366 W-NGWAWIAGAALYLLCL--PALRR 387
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 54.5 bits (131), Expect = 3e-10 Identities = 52/186 (27%), Positives = 79/186 (42%), Gaps = 8/186 (4%) Query: 15 FLLGMLAILGPLNIDMYLPSFPEIAEDLSARASLVQLSLTACLIGLTIGQVVVGPLSDAK 74 L +L+ LN + S P+IA D + + TA ++ +IG V G LSD Sbjct: 17 IWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQL 76 Query: 75 GRRKPLLLCIFLFALFSLFCALAPNITTLVI-ARFLQGFTASAGLVLSRAIVRDVFTGRE 133 G ++ LL I + S+ + + +L+I ARF+QG A+A L +V Sbjct: 77 GIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKEN 136 Query: 134 LSKFFSLLMVITAVAPMVAPMTGGAILLLPFASWHTIFLFLTFIGFLLVLIIALKLTETL 193 K F L+ I A+ V P GG I H I + ++ +I L + L Sbjct: 137 RGKAFGLIGSIVAMGEGVGPAIGGMIA-------HYIHWSYLLLIPMITIITVPFLMKLL 189 Query: 194 PPEKRI 199 E RI Sbjct: 190 KKEVRI 195
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 62.9 bits (153), Expect = 3e-12 Identities = 31/208 (14%), Positives = 82/208 (39%), Gaps = 17/208 (8%) Query: 179 IVGVVLAFVVLAITFGSLVIAGLPIVTALIGLGVSVALTLIGTQFFTIASVSLSLSGMIG 238 ++L F+V+ + ++ +P + + V + T F + +L++ GM+ Sbjct: 345 FEAIMLVFLVMYLFLQNMRATLIPTIA----VPVVLLGTFAILAAFGYSINTLTMFGMV- 399 Query: 239 LAVGI---DYALFIFTKHRQFLGEGVQKNESIAKAAGTAGSAVVFAGLTVIVALCGLTVV 295 LA+G+ D + + R + + + E+ K+ A+V + + + Sbjct: 400 LAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFF 459 Query: 296 GI---PFMSAMGLTAALSVLMAVLASVTLVPAVLSIAGKRMIPKSNKKKEKKSAGTNAWG 352 G +T ++ ++VL ++ L PA+ + ++ + + + G W Sbjct: 460 GGSTGAIYRQFSITIVSAMALSVLVALILTPALCAT----LLKPVSAEHHENKGGFFGW- 514 Query: 353 RFVTKKPILLSIFSIILLAVISLPAMHL 380 F T ++ ++ + ++ +L Sbjct: 515 -FNTTFDHSVNHYTNSVGKILGSTGRYL 541 Score = 34.0 bits (78), Expect = 0.003 Identities = 33/150 (22%), Positives = 57/150 (38%), Gaps = 7/150 (4%) Query: 180 VGVVLAFVVLAITFGSLVIAGLPIVT-ALIGLGVSVALTLIGTQFFTIASVSLSLSGMIG 238 + V+ F+ LA + S I ++ L +GV +A TL + V L IG Sbjct: 878 ISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLT--TIG 935 Query: 239 LAVGIDYALFIFTKHRQFLGEGVQKNESIAKAAGTAGSAVVFAGLTVIVALCGLTV---V 295 L+ + F K EG E+ A ++ L I+ + L + Sbjct: 936 LSAKNAILIVEFAKDLM-EKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGA 994 Query: 296 GIPFMSAMGLTAALSVLMAVLASVTLVPAV 325 G +A+G+ ++ A L ++ VP Sbjct: 995 GSGAQNAVGIGVMGGMVSATLLAIFFVPVF 1024 Score = 31.7 bits (72), Expect = 0.011 Identities = 33/236 (13%), Positives = 81/236 (34%), Gaps = 30/236 (12%) Query: 438 EMKDLHNVASVT-----PAMPNEKGDYAI-ITAVPETGPNDKATKELVQDIRKRSDKNGI 491 EM + P + G ++ I G + L++++ + GI Sbjct: 796 EMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAMALMENLASKLP-AGI 854 Query: 492 RLLVTGSTAVNIDISDRLNDAIPEFAILIVGFAFVLLTVVFRSLLVPLAAVVGFLLTMTA 551 TG + ++ + + ++V F+ L ++ S +P++ ++ L + Sbjct: 855 GYDWTGMSYQERLSGNQAPALVA-ISFVVV---FLCLAALYESWSIPVSVMLVVPLGIV- 909 Query: 552 TLGLSVFVLQDGNFTGLLSIPEKGPILAFLPILAIGILFGLAMDYQVFLVSRMREEYVKT 611 G +K + + +L GL+ + +V ++ K Sbjct: 910 -----------GVLLAATLFNQKNDVYFMVGLLT---TIGLSAKNAILIVEFAKDLMEKE 955 Query: 612 KNPVQ--AIHAGLKHSGPVV--TAAGLIMIFVFAGFIFAGEATIKSMGLAMTFGVL 663 V + A P++ + A ++ + A AG ++G+ + G++ Sbjct: 956 GKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMV 1011
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 75.3 bits (185), Expect = 4e-18 Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 3/102 (2%) Query: 3 KVLIADDHLVVREGLKLLIETNDHYTITGEAENGKTAVRLAEELKPDVILMDLYMPEMSG 62 +L+ADD +R L + + N T R D+++ D+ MP+ + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRI--TSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 63 LEAIKQIKE-QSDVPIIILTTYNEDHLMIEGLESGANGYLLK 103 + + +IK+ + D+P+++++ N I+ E GA YL K Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPK 104
>PF06580#Sensor histidine kinase Length = 349 Score = 39.1 bits (91), Expect = 2e-05 Identities = 16/86 (18%), Positives = 37/86 (43%), Gaps = 11/86 (12%) Query: 320 NAAKHA-----EAKNVWVSVQEEEGQIRITVKDDGKGFDAGTEMRKSGHYGLLGIQERVN 374 N KH + + + ++ G + + V++ G T ++S GL ++ER+ Sbjct: 266 NGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNT--KESTGTGLQNVRERLQ 323 Query: 375 MMNG---TCRITSAKSAGTQIEIIIP 397 M+ G +++ + ++IP Sbjct: 324 MLYGTEAQIKLSEKQG-KVNAMVLIP 348
>TYPE3OMGPROT#Type III secretion system outer membrane G protein family signature. Length = 607 Score = 25.2 bits (55), Expect = 0.049 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Query: 11 MNALTDQIVAMDLLNSAKSGVRNYAMAATEAGTPEVKAILTRHLEEALDMHEQI 64 ++ T Q V +D ++ R A A EA P + AI+ R E + M++++ Sbjct: 219 LSDATIQQVTVDNQRIPQAATRASAQARVEA-DPSLNAIIVRDSPERMPMYQRL 271
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 30.2 bits (68), Expect = 0.005 Identities = 17/97 (17%), Positives = 33/97 (34%), Gaps = 10/97 (10%) Query: 64 SFLPLLFIPAMTGVINYPSLFSASGAALFLIIVLSTIVTMIAAGYASQLLEHKANQRKEK 123 F+P+ F TG I + A ++V + + A LL+ + + E Sbjct: 452 VFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCA----TLLKPVSAEHHEN 507 Query: 124 RSAASMYRNPYNFVHGRRLSGYGEIICALSISLSHTG 160 + + +N ++ Y + L TG Sbjct: 508 KGG---FFGWFNTTFDHSVNHYTNS---VGKILGSTG 538
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 78.7 bits (194), Expect = 5e-19 Identities = 28/118 (23%), Positives = 57/118 (48%), Gaps = 2/118 (1%) Query: 7 KILMVDDDEHILNLLITCFEKEGFSNISTAMTGSETLLKIDQELPNIILLDVMLPDTDGF 66 IL+ DDD I +L + G+ + + I ++++ DV++PD + F Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYD-VRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 67 TLCSKIRSH-TNVPILFLTAKTTDLDKLQGFSFGGDDYITKPFNPLEIVARVKAQLKR 123 L +I+ ++P+L ++A+ T + ++ G DY+ KPF+ E++ + L Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
>PF06580#Sensor histidine kinase Length = 349 Score = 41.8 bits (98), Expect = 2e-06 Identities = 58/344 (16%), Positives = 119/344 (34%), Gaps = 67/344 (19%) Query: 4 FLRSHAVLILLFLLQGLFVFFYYWFAGLHSFSHLFYILGVQLLILAGYL-AYRWYKDRG- 61 L S I + L+ + Y F + L + ++ A + W+ Sbjct: 38 KLHSMIFNIAISLMGLVLTHAYRSFIKRQGWLKLNMGQIILRVLPACVVIGMVWFVANTS 97 Query: 62 ---VYHWLSSEQEGTDIPYLGSSVFCSEL-------------YEKQMELIRMQHQKL--H 103 + +++++ +P S +F + + K + + K+ Sbjct: 98 IWRLLAFINTKPVAFTLPLALSIIFNVVVVTFMWSLLYFGWHFFKNYKQAEIDQWKMASM 157 Query: 104 ETEAKLDARVTYMNQWVHQVKTPLSVINLIIQEEDEPVFEQIKKEVRQIEFGLETLL-YS 162 EA+L A +N H + L+ I +I E+ + R++ L L+ YS Sbjct: 158 AQEAQLMALKAQINP--HFMFNALNNIRALILEDPT--------KAREMLTSLSELMRYS 207 Query: 163 SRLDLFERDFKVEAVSLSELLQSVIQSYKRFFIQYRVYP---KMDIRDDHQIYTDAKWLK 219 R VSL++ L +V+ SY + + + + + + I D + Sbjct: 208 LRYS------NARQVSLADEL-TVVDSY--LQLASIQFEDRLQFENQINPAIM-DVQVPP 257 Query: 220 FAIGQVVTNAVKYSAGKSD---RLELNVFRDEDRTVLEVKDYGVGIPSQDIKRVFDPYYT 276 + +V N +K+ + ++ L +D LEV++ G Sbjct: 258 MLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNT---------- 307 Query: 277 GENGRRFQESTGIGLHLVKE---ITGKLNHTVDISSSPGEGTSV 317 +ESTG GL V+E + + +S G+ ++ Sbjct: 308 -------KESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAM 344
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 55.7 bits (134), Expect = 4e-11 Identities = 46/247 (18%), Positives = 93/247 (37%), Gaps = 34/247 (13%) Query: 55 PKRIVTD--FYAGELLSVD------ANVVGAGSWAFKNPFIKKQLKNTTDIG--NPVNVE 104 P RIV LL++ A+ + W + P + D+G N+E Sbjct: 35 PNRIVALEWLPVELLLALGIVPYGVADTINYRLWVSEPPLPD----SVIDVGLRTEPNLE 90 Query: 105 KVMQLKPDLIVLMK--DDQYEKLSKIAPTIVIPFNTAKN----TKDTVSLFGDIAGAKDK 158 + ++KP +V E L++IAP F+ K + +++ D+ + Sbjct: 91 LLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNLQSA 150 Query: 159 AKSFMADFNKKAEANQKRLKNVIGKDET-VGLYETTDKGEIWIFNDNSGRGGQAVYNALG 217 A++ +A + + + R + + + L D + +F NS Q + + G Sbjct: 151 AETHLAQYEDFIRSMKPRF---VKRGARPLLLTTLIDPRHMLVFGPNS--LFQEILDEYG 205 Query: 218 LKAPAKIEKDIMKTGAMKQVSQEVIPQYA-ADYMFITDYNPNGESKTFERLKDSSVWKNL 276 + + E + + A VS + + Y D + N K + L + +W+ + Sbjct: 206 IPNAWQGETNFWGSTA---VSIDRLAAYKDVDVLCFDHDNS----KDMDALMATPLWQAM 258 Query: 277 DAVKNNR 283 V+ R Sbjct: 259 PFVRAGR 265
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 32.0 bits (72), Expect = 4e-04 Identities = 16/62 (25%), Positives = 32/62 (51%) Query: 53 RVAQLERQNAEQTRELTRLSQEDQRQNREITRMNEQIRRLSQSIEIHTRRLNRLNQRLRA 112 R+A+ E + ++ + QE +++ +EI R + R + E +RL L++ +A Sbjct: 131 RLAKAEEKARKEAEAAEKAFQEAEQRRKEIEREKAETERQLKLAEAEEKRLAALSEEAKA 190 Query: 113 VE 114 VE Sbjct: 191 VE 192
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 79.7 bits (196), Expect = 3e-20 Identities = 36/122 (29%), Positives = 67/122 (54%), Gaps = 1/122 (0%) Query: 67 LTDEEAAGHSAPPADWAEFVPDIGVKENDYTVTKRQWGAFFGTDLDLQLRRRGIDTIVLC 126 LTD G ++ P + + + ++ +++D +TK ++ AF T+L +R+ G D +++ Sbjct: 91 LTDFWGPGLNSGPYE-EKIITELAPEDDDLVLTKWRYSAFKRTNLLEMMRKEGRDQLIIT 149 Query: 127 GIATNIGVESTAREAFQLGYQQVFVTDAMATFSDEQHEATLKFIFPKIGRSRTTEEFIAQ 186 GI +IG TA EAF + FV DA+A FS E+H+ L++ + + T+ + Q Sbjct: 150 GIYAHIGCLVTACEAFMEDIKAFFVGDAVADFSLEKHQMALEYAAGRCAFTVMTDSLLDQ 209 Query: 187 TK 188 + Sbjct: 210 LQ 211
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 69.9 bits (171), Expect = 3e-15 Identities = 71/386 (18%), Positives = 130/386 (33%), Gaps = 32/386 (8%) Query: 13 IMVVLVNLFV-FVFFYTFLAVLPIYMIQELGGSESQG---GLLISLFLLSAIITRPFSGA 68 ++V+L + + V + VLP + ++L S G+L++L+ L P GA Sbjct: 7 LIVILSTVALDAVGIGLIMPVLPGLL-RDLVHSNDVTAHYGILLALYALMQFACAPVLGA 65 Query: 69 IIERFGKKRMTIVSLALFALSSYLYLPLHNFYLLLGLRFFQGIWFSILTTVTGAIA---- 124 + +RFG++ + +VSLA A+ + ++L R GI T TGA+A Sbjct: 66 LSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGI-----TGATGAVAGAYI 120 Query: 125 ADIIPAKRRGEGLGYFAMSMNLAMAIGPFLGLSLVKVISFPVFFTIFAVFVSLGLLIAFM 184 ADI R G+ + M GP LG + FF A ++ + Sbjct: 121 ADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFF--AAAALNGLNFLTGC 178 Query: 185 IRVPDQNNSGTTVFRFSFSDMFEKGALKIAIVGLSISFCYSSVTSYLSVYAKTIHLL--- 241 +P+ + R + + ++ + + + ++ Sbjct: 179 FLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGE 238 Query: 242 --------DVSGYFFVCFAVTMMAARPFTGKLFDRVGPGIVIYPSIIVFSAGLCMLAMTN 293 + + +A TG + R+G + +I G +LA Sbjct: 239 DRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFAT 298 Query: 294 SALMLLLSGAVIGLGYGSIVPCMQTLAIQNSPGHRSGFATATFFTFFDSGIAGGSYVFGL 353 M ++ G G +P +Q + + R G + G +F Sbjct: 299 RGWMAFPIMVLLASG-GIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTA 357 Query: 354 FVASAGFHSIYLAAGLFVLIALLLYG 379 A SI G + LY Sbjct: 358 IYA----ASITTWNGWAWIAGAALYL 379
>FLAGELLIN#Flagellin signature. Length = 507 Score = 67.8 bits (165), Expect = 7e-15 Identities = 46/244 (18%), Positives = 98/244 (40%), Gaps = 7/244 (2%) Query: 1 MRVTQGMIAKNSLRFIGSSYDKLDRLQQQVSTGKKITKASDDPVVAMKGMQYRTQLAQVN 60 + ++ + + S L +++S+G +I A DD ++ + + + Sbjct: 2 QVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLT 61 Query: 61 QYQRNVSQGFTWLENSESSVNSETDIMGKIRDLMVQAKSDSNGETELKAIGTEIGQLKKQ 120 Q RN + G + + +E ++N + + ++R+L VQA + +N +++LK+I EI Q ++ Sbjct: 62 QASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEE 121 Query: 121 LVSVAN-TQVNGRYLFNGTNSDVPPITENADGTYTYNYENYTGASDVNINISNGAVLKVN 179 + V+N TQ NG + + N + N T T + + S VN Sbjct: 122 IDRVSNQTQFNGVKVLSQDNQMKIQVGANDGETITIDLQKIDVKS------LGLDGFNVN 175 Query: 180 SDPNSAFGGVAQNGDNVFEFLNSLEASLSKGTLSEADSDQILSDIDGFTDKMNAEKSNIG 239 + G + + NV + + + + + DK+ +N Sbjct: 176 GPKEATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQ 235 Query: 240 ARTN 243 T+ Sbjct: 236 LTTD 239 Score = 30.8 bits (69), Expect = 0.008 Identities = 36/272 (13%), Positives = 83/272 (30%), Gaps = 17/272 (6%) Query: 24 DRLQQQVSTGKKITKASDDPVVAMKGMQYRTQLAQVNQYQRNVSQGFTWLENSESSVNSE 83 + +T + K + + + + +G T+ ++++ + Sbjct: 237 TTDDAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGN 296 Query: 84 TDIMGKIRD--LMVQAKSDSNGETELKAIGTEIGQLKKQLVSVANTQVNGRYLFNGTNSD 141 + I + + + G + A + ++ V + D Sbjct: 297 GKVSTTINGEKVTLTVADITAGAANVDAATLQ-----------SSKNVYTSVVNGQFTFD 345 Query: 142 VPPITENADGTYTYNYENYTGASDVNINISNGAVLKVNSDPNSAFGGVAQNGDNVFEFLN 201 T+N + N + I ++ + G D ++ Sbjct: 346 --DKTKNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVS 403 Query: 202 SLEASLSKGTLSEADSDQILSDIDGFTDKMNAEKSNIGARTNRLELIQTRLESQAATAEK 261 +L + + L+ ID K++A +S++GA NR + T L + Sbjct: 404 TLINEDAAAAKKSTAN--PLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNS 461 Query: 262 VLSDNEDVEMEDVIVDYLSQQTVHRAALSVNA 293 S ED + + + Q + +A SV A Sbjct: 462 ARSRIEDADYATEVSNMSKAQILQQAGTSVLA 493
>FLAGELLIN#Flagellin signature. Length = 507 Score = 158 bits (400), Expect = 4e-47 Identities = 87/268 (32%), Positives = 132/268 (49%), Gaps = 4/268 (1%) Query: 1 MRINHNIAALNTSRQLNAGSNSAAKNMEKLSSGLRINRAGDDAAGLAISEKMRSQIRGLD 60 IN N +L T LN +S + +E+LSSGLRIN A DDAAG AI+ + S I+GL Sbjct: 2 QVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLT 61 Query: 61 MASKNAQDGISLIQTAEGALNETHSILQRMSELATQAANDTNTTSDRAELQKEMDQLSSE 120 AS+NA DGIS+ QT EGALNE ++ LQR+ EL+ QA N TN+ SD +Q E+ Q E Sbjct: 62 QASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEE 121 Query: 121 VTRISTDTEFNTKKLLDGTATDLTFQIGANEGQTMKLSINKMDSESLAVGDAT---KGID 177 + R+S T+FN K+L + Q+GAN+G+T+ + + K+D +SL + Sbjct: 122 IDRVSNQTQFNGVKVLSQDNQ-MKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEA 180 Query: 178 ISTSAEAASTALTTIKTAIDTVSSERAKLGAVQNRLEHTINNLGTSSENLTSAESRIRDV 237 +++ +T T + R + + + T + + D Sbjct: 181 TVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTDD 240 Query: 238 DMASEMMEYTKNNILTQASQAMLAQANQ 265 + ++ K T + A A Sbjct: 241 AENNTAVDLFKTTKSTAGTAEAKAIAGA 268 Score = 98.2 bits (244), Expect = 2e-25 Identities = 49/186 (26%), Positives = 82/186 (44%) Query: 90 MSELATQAANDTNTTSDRAELQKEMDQLSSEVTRISTDTEFNTKKLLDGTATDLTFQIGA 149 + Q++ + T+ + + + + K T + A Sbjct: 322 VDAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSDLEANNAVKGESKITVNGAEYTANA 381 Query: 150 NEGQTMKLSINKMDSESLAVGDATKGIDISTSAEAASTALTTIKTAIDTVSSERAKLGAV 209 + ++ + D + + ++ + L +I +A+ V + R+ LGA+ Sbjct: 382 AGDKVTLAGKTMFIDKTASGVSTLINEDAAAAKKSTANPLASIDSALSKVDAVRSSLGAI 441 Query: 210 QNRLEHTINNLGTSSENLTSAESRIRDVDMASEMMEYTKNNILTQASQAMLAQANQQPQQ 269 QNR + I NLG + NL SA SRI D D A+E+ +K IL QA ++LAQANQ PQ Sbjct: 442 QNRFDSAITNLGNTVTNLNSARSRIEDADYATEVSNMSKAQILQQAGTSVLAQANQVPQN 501 Query: 270 VLQLLK 275 VL LL+ Sbjct: 502 VLSLLR 507
>PF03944#delta endotoxin Length = 633 Score = 31.6 bits (71), Expect = 0.009 Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 10/93 (10%) Query: 206 DQLGFAVDDATNELTANAEGKNAKFTFNGLEMTKTSNNFTINGIKYTLNSVTDSNKTVTI 265 D L F ++ T T G + + ++ TING YT +V Sbjct: 521 DSLRFEQNNTTARYTLRGNGNSYNLYLRVSSIGNSTIRVTINGRVYTATNV--------- 571 Query: 266 NSTTDTDGIFDNIKDFVD-KYNTLIKSANEKVT 297 N+TT+ DG+ DN F D ++ S+N V Sbjct: 572 NTTTNNDGVNDNGARFSDINIGNVVASSNSDVP 604
>SECA#SecA protein signature. Length = 901 Score = 1215 bits (3145), Expect = 0.0 Identities = 447/906 (49%), Positives = 592/906 (65%), Gaps = 71/906 (7%) Query: 1 MLGILNKMF-DPTKRALNKYEKIANDIDAVRGDYENLSDEALKHKTAEFKERLEKGETTD 59 ++ +L K+F R L + K+ N I+A+ + E LSDE LK KTAEF+ RLEKGE + Sbjct: 2 LIKLLTKVFGSRNDRTLRRMRKVVNIINAMEPEMEKLSDEELKGKTAEFRARLEKGEVLE 61 Query: 60 DLLVEAFAVVREASRRVTGMFPFKVQLMGGIALHEGNISEMKTGEGKTLTSTLPVYLNAL 119 +L+ EAFAVVREAS+RV GM F VQL+GG+ L+E I+EM+TGEGKTLT+TLP YLNAL Sbjct: 62 NLIPEAFAVVREASKRVFGMRHFDVQLLGGMVLNERCIAEMRTGEGKTLTATLPAYLNAL 121 Query: 120 TGKGVHVVTVNEYLASRDAQQMGEIFAFLGLTVGLNLNSMSKDEKREAYAADITYSTNNE 179 TGKGVHVVTVN+YLA RDA+ +F FLGLTVG+NL M KREAYAADITY TNNE Sbjct: 122 TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAYAADITYGTNNE 181 Query: 180 LGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILVDEARTPLIISGQAQKSTKLYVQANA 239 GFDYLRDNM E+ VQR LH+A++DEVDSIL+DEARTPLIISG A+ S+++Y + N Sbjct: 182 YGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNK 241 Query: 240 FVRTLKK-----------DQDYTYDVKTKGVQLTEEGMTKAEKTFGI-------DNLFDV 281 + L + + ++ D K++ V LTE G+ E+ ++L+ Sbjct: 242 IIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSP 301 Query: 282 KNVALNHHINQALKAHAAMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKE 341 N+ L HH+ AL+AHA +DVDY+V+DG+V+IVD TGR M+GRR+S+GLHQA+EAKE Sbjct: 302 ANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKE 361 Query: 342 GLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVSIPTNQPVIRD 401 G++IQNE+ TLA+ITFQNYFR+YEKLAGMTGTA TE EF +IY + V +PTN+P+IR Sbjct: 362 GVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRK 421 Query: 402 DRPDLIYRSMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNA 461 D PDL+Y + K +A+ ED+ +R GQPVLVGT+++E SEL+S L GI H VLNA Sbjct: 422 DLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNA 481 Query: 462 KNHEREAQIIEEAGQKGAVTIATNMAGRGTDIKLG------------------------- 496 K H EA I+ +AG AVTIATNMAGRGTDI LG Sbjct: 482 KFHANEAAIVAQAGYPAAVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADW 541 Query: 497 ----EGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDELMRRFGAE 552 + V E GGL ++GTERHESRRIDNQLRGRSGRQGD G ++FYLSMED LMR F ++ Sbjct: 542 QVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDALMRIFASD 601 Query: 553 RTMAMLDRFGMDDSTPIQSKMVSRAVESSQKRVEGNNFDSRKQLLQYDDVLRQQREVIYK 612 R M+ + GM I+ V++A+ ++Q++VE NFD RKQLL+YDDV QR IY Sbjct: 602 RVSGMMRKLGMKPGEAIEHPWVTKAIANAQRKVESRNFDIRKQLLEYDDVANDQRRAIYS 661 Query: 613 QRFEVIDSENLRDIVEGMIKSSLERAIAAYTPKEELPEEWNLDGLVELVNSTYLDEGALE 672 QR E++D ++ + + + + + I AY P + L E W++ GL E + + + + L Sbjct: 662 QRNELLDVSDVSETINSIREDVFKATIDAYIPPQSLEEMWDIPGLQERLKNDFDLD--LP 719 Query: 673 KSDIFGKEPDEMHEMIMDRIMTK----YNEKEENFGTEQMREFEKVIVLRAVDSKWMDHI 728 ++ KEP+ E + +RI+ + Y KEE G E MR FEK ++L+ +DS W +H+ Sbjct: 720 IAEWLDKEPELHEETLRERILAQSIEVYQRKEEVVGAEMMRHFEKGVMLQTLDSLWKEHL 779 Query: 729 DAMDQLRQGIHLRAYAQTNPLREYQMEGFAMFEHMIESIEDEVAKFVMKAEIES------ 782 AMD LRQGIHLR YAQ +P +EY+ E F+MF M+ES++ EV + K ++ Sbjct: 780 AAMDYLRQGIHLRGYAQKDPKQEYKRESFSMFAAMLESLKYEVISTLSKVQVRMPEEVEE 839 Query: 783 -----NLEREEVVQGQTTAHQPQDGDEAKQAKKAPVRKVVD--IGRNAPCHCGSGKKYKN 835 +E E + Q Q +HQ D+ A A + + +GRN PC CGSGKKYK Sbjct: 840 LEQQRRMEAERLAQMQQLSHQ----DDDSAAAAALAAQTGERKVGRNDPCPCGSGKKYKQ 895 Query: 836 CCGRTE 841 C GR + Sbjct: 896 CHGRLQ 901
>INVEPROTEIN#Salmonella/Shigella invasion protein E (InvE) signature. Length = 372 Score = 32.4 bits (73), Expect = 0.002 Identities = 26/103 (25%), Positives = 53/103 (51%), Gaps = 5/103 (4%) Query: 11 ENMASRLADFRGSLDLESKEARIAELDEKMAEPEFWNDQQKAQTVINEANG-LKEYVNSY 69 + M++ LA FR D E K + ++ E++ E E ++ +I+ G L++++ Sbjct: 56 DEMSAALAQFRNRRDYEKKSSNLSNSFERVLEDEALPKAKQILKLISVHGGALEDFLRQA 115 Query: 70 HQLSESHEELQMT-HDLLKEEPDQDLQQELEKELKSLTKELNE 111 L +L + +LL+ +DL++ + K+L+SL K + E Sbjct: 116 RSLFPDPSDLVLVLRELLRR---KDLEEIVRKKLESLLKHVEE 155
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 135 bits (340), Expect = 3e-37 Identities = 83/401 (20%), Positives = 174/401 (43%), Gaps = 10/401 (2%) Query: 9 LIVSLLLGAILVPINSTMIAVALSSISRSFSESIASITWVVTVYLIVMAVTQPIAGKLGD 68 +++ L + + +N ++ V+L I+ F++ AS WV T +++ ++ + GKL D Sbjct: 15 ILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSD 74 Query: 69 MYGNKKMYLWGVGLFLIASLGCALSPSLF-LLIFFRALQAAGGALLTPNSIAIIRHVVSE 127 G K++ L+G+ + S+ + S F LLI R +Q AG A + ++ + + Sbjct: 75 QLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPK 134 Query: 128 KRLPKVFGFFGLGAGLGAALGPFIGSLLIESFSWHSIFWVNIPFLAIALVTALVMFPKYK 187 + K FG G +G +GP IG ++ W + + IP + I V L+ K K Sbjct: 135 ENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWS--YLLLIPMITIITVPFLMKLLK-K 191 Query: 188 EETSDAPLDIIGSVLLAGSIVSIILLTKNESSLGYWVYALLILVFVPLFFRRELRTKHPI 247 E DI G +L++ IV +L T + S + ++ ++ +F + + P Sbjct: 192 EVRIKGHFDIKGIILMSVGIVFFMLFTTSYS----ISFLIVSVLSFLIFVKHIRKVTDPF 247 Query: 248 IDFDLFKNTTFTSANLSVLLSNLMMYAVLLIMPLFMTGHFSMNTSHSG-MALSVFSVFMS 306 +D L KN F L + + + ++P M ++T+ G + + ++ + Sbjct: 248 VDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVI 307 Query: 307 ASNWGGAQLHQKWGARRMIFLSFGLMAVANLLFLLLVYSHSVPFLMASLIVGGIASGAGL 366 + G L + G ++ + ++V+ L L+ + S + + V G S Sbjct: 308 IFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLS-FTK 366 Query: 367 TSMQVSSLATVEPGMSGIASGIFSTFRYFGSIISSALIGLI 407 T + ++++ +G + + + A++G + Sbjct: 367 TVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGL 407
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 75.0 bits (184), Expect = 8e-19 Identities = 29/165 (17%), Positives = 56/165 (33%), Gaps = 13/165 (7%) Query: 3 RTTNKRIIDAAMNLIIQKGYRAATTKEIAEKAKVSEATIFRNFKNKQGLMKAMIEQQTPV 62 + T + I+D A+ L Q+G + + EIA+ A V+ I+ +FK+K L + E Sbjct: 10 QETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESN 69 Query: 63 PESMITKAEGDLYEDL-------LHFAATLLQQLEQKKEVFRICLREPELFED---VLQD 112 + + + D L E+++ + I + E + V Q Sbjct: 70 IGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQA 129 Query: 113 IVVYPQSVKKHLIVYFKELTKKNMISPGSEEANADVFMTMIFGYF 157 + K + M+ ++ GY Sbjct: 130 QRNLCLESYDRIEQTLKHCIEAKMLPADL---MTRRAAIIMRGYI 171
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 74.1 bits (182), Expect = 1e-15 Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 2/85 (2%) Query: 745 DASEFSRFSTGDVLVCKMTTPLWTSLF--QDAKAVITDTGGILSHAAIIAREYGLPAVLG 802 + + + V++ + TP T+ Q K TD GG SH+AI++R +PAV+G Sbjct: 146 ETGSLATIAEETVIIAEDLTPSDTAQLNKQFVKGFATDIGGRTSHSAIMSRSLEIPAVVG 205 Query: 803 TRAATDRLNDGDIVTVDGTNGKITI 827 T+ T+++ GD+V VDG G + + Sbjct: 206 TKEVTEKIQHGDMVIVDGIEGIVIV 230
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 30.2 bits (68), Expect = 0.032 Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 3/58 (5%) Query: 124 ISRVTNDTMVVKELITNNISGFITGIISVIGSLTILFFM-NWKLTLLVLIVVPLAAVI 180 + + T V+ I + I+ V L + F+ N + TL+ I VP+ + Sbjct: 323 VLYPYDTTPFVQLSIHEVVKTLFEAIMLVF--LVMYLFLQNMRATLIPTIAVPVVLLG 378
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 96.1 bits (239), Expect = 3e-25 Identities = 38/126 (30%), Positives = 66/126 (52%), Gaps = 1/126 (0%) Query: 4 ILVADDDRHIRELVRLMMEQSGFDVAEAEDGEAAVRLIESAPIDLIILDVMMPKMDGFEV 63 ILVADDD IR ++ + ++G+DV + R I + DL++ DV+MP + F++ Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 64 SEAVRS-FTDIPILMLTAKGETLDKVQGFTSGADDYLVKPFEPLELEARVKALLKRYRIT 122 ++ D+P+L+++A+ + ++ GA DYL KPF+ EL + L + Sbjct: 66 LPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKRR 125 Query: 123 AEKLLT 128 KL Sbjct: 126 PSKLED 131
>PF06580#Sensor histidine kinase Length = 349 Score = 36.4 bits (84), Expect = 1e-04 Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 24/104 (23%) Query: 250 LIHNAVKF----TGEGGRISVKIADLPGAAAVEIADDGIGMEPEQAERVFERFYKADKAR 305 L+ N +K +GG+I +K G +E+ + G E Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKE------------- 309 Query: 306 NEGGSGLGLS-IAQKIAELHGG--SIEVESKRGEGTLFRVILPA 346 +G GL + +++ L+G I++ K+G+ V++P Sbjct: 310 ---STGTGLQNVRERLQMLYGTEAQIKLSEKQGKVN-AMVLIPG 349
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 32.6 bits (74), Expect = 0.002 Identities = 18/99 (18%), Positives = 31/99 (31%), Gaps = 2/99 (2%) Query: 12 AQIVQLLQDGQYFFHK-GLKAYKERNLKRASKLIQRAVHLEPNDSEMLSRLAVIYSEMGH 70 A + ++ D + Y+ + A K+ Q L+ DS L MG Sbjct: 26 AMLNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQ 85 Query: 71 YQQSNELFDFILVNLKEEMPECHYFKANNFAHLGLFQEA 109 Y + + + + P + A G EA Sbjct: 86 YDLAIHSY-SYGAIMDIKEPRFPFHAAECLLQKGELAEA 123
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 34.4 bits (79), Expect = 7e-04 Identities = 43/270 (15%), Positives = 87/270 (32%), Gaps = 12/270 (4%) Query: 106 LWFVMLLMIVHSATGAAYNPASISLIPNIVGENSLQKANAVIQSSGQIVRLAAITLSGVF 165 LW + + IV TGA + + I +I + + + + +A L G Sbjct: 96 LWVLYIGRIVAGITGATG-AVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGG-L 153 Query: 166 LTFISPAYSLFIALIFYLLSGFLVLFMSYQVQHAKQDTVAVRQRGTYFGRLKRGFVLVRK 225 + SP F A L+ F+ + ++ + F R Sbjct: 154 MGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNP-----LASFRWARG 208 Query: 226 HQILYPLAIYCIFMNFAAAPWEALSAVYVAEDLNMPPIIYSL-LKATGTGGAFLMGFILA 284 ++ L M AL ++ + + + L A G + I Sbjct: 209 MTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITG 268 Query: 285 KVKVNKYGLLFVSAGII-EGAAFFITGLNTFLPLVFLAAFAFGSAVSAINVPEYT-IIQT 342 V + G+I +G + + T + F S I +P ++ Sbjct: 269 PVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASG--GIGMPALQAMLSR 326 Query: 343 SVDHDDQPQVYAVIHMISNISIPLGAVLCG 372 VD + Q Q+ + +++++ +G +L Sbjct: 327 QVDEERQGQLQGSLAALTSLTSIVGPLLFT 356
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 28.5 bits (63), Expect = 0.028 Identities = 21/170 (12%), Positives = 55/170 (32%), Gaps = 3/170 (1%) Query: 55 QFKKKQEDASETAAKRKNQAQLAFDAGEEELAKKALTEMKYLEGKAAEHEKAYEQAKTQL 114 Q + + SET + + + +EE AK + + + ++ EQ++T Sbjct: 1081 QTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQ 1140 Query: 115 AELKEQLETLETRLRDVKDKKQALIARANAANAKEHMNASFDKIDSESAYREFLRMESRI 174 + + E T + A+ + +++ ++ +ES Sbjct: 1141 PQAEPARENDPTVNIKEPQSQTN--TTADTEQPAKETSSNVEQPVTESTTVNTGNSVVEN 1198 Query: 175 -EEMEVRVKYGTSAEANTEYSRSQYSDEVEAEIEKMRSLSLEKTERQKAA 223 E T ++ ++++ V + + + +R A Sbjct: 1199 PENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVA 1248
>PF06580#Sensor histidine kinase Length = 349 Score = 32.5 bits (74), Expect = 0.002 Identities = 15/84 (17%), Positives = 34/84 (40%), Gaps = 8/84 (9%) Query: 261 IVQEALSNVFRH---SKATKVTVRLGAKHQ--KLQLKVIDNGAGFTMDQVKASSYGLHSI 315 +VQ + N +H + L + L+V + G+ + +++ GL ++ Sbjct: 259 LVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKESTGTGLQNV 318 Query: 316 KERASEIGGIA---EIISVKGKGT 336 +ER + G ++ +GK Sbjct: 319 RERLQMLYGTEAQIKLSEKQGKVN 342
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 63.3 bits (154), Expect = 5e-14 Identities = 25/117 (21%), Positives = 44/117 (37%), Gaps = 2/117 (1%) Query: 2 IRVLLIDDHEMVRMGLAAFLEAQPDIEVAGEASDGQQGVDLAAELLPDVILMDLVMDGMD 61 +L+ DD +R L L + +V S+ A D+++ D+VM + Sbjct: 4 ATILVADDDAAIRTVLNQALS-RAGYDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 62 GIEATKQICAKLNDPKIIVLTSFIDDDKVYPVIEAGALSYLLKTSKAAEIAEAIRAA 118 + +I D ++V+++ E GA YL K E+ I A Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRA 118
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 63.1 bits (153), Expect = 6e-14 Identities = 18/55 (32%), Positives = 33/55 (60%) Query: 2 KEKEKLIIEAAIKLFARKGYKSTSVQEIADECKISKGAFYLYFPSKEALLLSMLN 56 +E + I++ A++LF+++G STS+ EIA +++GA Y +F K L + Sbjct: 10 QETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWE 64
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 325 bits (835), Expect = e-115 Identities = 181/261 (69%), Positives = 220/261 (84%) Query: 1 MDALGMKGKTAVVTGAAQGIGEATALALAEQGVNVAAIDTNEDLLLGLTDRLRQKGVQAQ 60 M+A G++GK A +TGAAQGIGEA A LA QG ++AA+D N + L + L+ + A+ Sbjct: 1 MNAKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAE 60 Query: 61 GFAADVSDSAAVNDIIAAVERDMGPIEILANVAGVLRPGPVQSLSDEDWDQTFSVNTTGV 120 F ADV DSAA+++I A +ER+MGPI+IL NVAGVLRPG + SLSDE+W+ TFSVN+TGV Sbjct: 61 AFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGV 120 Query: 121 FHVSRAVSRYMIERQKGAIVTVGSNAAGVPRASMAAYAASKAAAVMFTKCLGLELAAHHI 180 F+ SR+VS+YM++R+ G+IVTVGSN AGVPR SMAAYA+SKAAAVMFTKCLGLELA ++I Sbjct: 121 FNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNI 180 Query: 181 RCNIVSPGSTETDMQRALWQDENGARDVIRGSLDTYKTGIPLQKLAKPSDIANAVLFLAS 240 RCNIVSPGSTETDMQ +LW DENGA VI+GSL+T+KTGIPL+KLAKPSDIA+AVLFL S Sbjct: 181 RCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVS 240 Query: 241 EQANHITMHDLCVDGGATLGV 261 QA HITMH+LCVDGGATLGV Sbjct: 241 GQAGHITMHNLCVDGGATLGV 261
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 439 bits (1130), Expect = e-158 Identities = 225/312 (72%), Positives = 266/312 (85%), Gaps = 4/312 (1%) Query: 1 MAIPSIPAYALPTASDMPENKVSWTLNPKRAVLLIHDMQNYFVDAFAKGEAPITEAAENI 60 MAIP+I Y +PTASDMP+NKVSW +P RAVLLIHDMQNYFVDAF G +P+TE + NI Sbjct: 1 MAIPAIQPYQMPTASDMPQNKVSWVPDPNRAVLLIHDMQNYFVDAFTAGASPVTELSANI 60 Query: 61 KKIKEQCKALGIPVVYTAQPGSQDPADRALLTDFWGPGLKSGPYEEKIIPELAPDDQDIV 120 +K+K QC LGIPVVYTAQPGSQ+P DRALLTDFWGPGL SGPYEEKII ELAP+D D+V Sbjct: 61 RKLKNQCVQLGIPVVYTAQPGSQNPDDRALLTDFWGPGLNSGPYEEKIITELAPEDDDLV 120 Query: 121 LTKWRYSAFKRTNLLEIMRESGRDQLMITGIYAHIGCLVTACEAFMDDIQSFFIGDAVAD 180 LTKWRYSAFKRTNLLE+MR+ GRDQL+ITGIYAHIGCLVTACEAFM+DI++FF+GDAVAD Sbjct: 121 LTKWRYSAFKRTNLLEMMRKEGRDQLIITGIYAHIGCLVTACEAFMEDIKAFFVGDAVAD 180 Query: 181 FSSEKHKMAIEYASQRCAYTALTNEVLELLGGAPVSEGEKKASA----VLTKDRVREQIA 236 FS EKH+MA+EYA+ RCA+T +T+ +L+ L AP + A+ V T + +R+QIA Sbjct: 181 FSLEKHQMALEYAAGRCAFTVMTDSLLDQLQNAPADVQKTSANTGKKNVFTCENIRKQIA 240 Query: 237 AILQESPSDIPDHEDLLDRGLDSVRIMSLVEQWRRDGAEVTFVELAENPTLEEWWRLLSS 296 +LQE+P DI D EDLLDRGLDSVRIM+LVEQWRR+GAEVTFVELAE PT+EEW +LL++ Sbjct: 241 ELLQETPEDITDQEDLLDRGLDSVRIMTLVEQWRREGAEVTFVELAERPTIEEWQKLLTT 300 Query: 297 RSQKVLPNADYL 308 RSQ+VLPNADYL Sbjct: 301 RSQQVLPNADYL 312
>STREPTOPAIN#Streptopain (C10) cysteine protease family signature. Length = 398 Score = 30.4 bits (68), Expect = 0.005 Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 19/93 (20%) Query: 81 DETSRELALDYVRGGLFDPRNMVPLPHEVTGPDNDLNDFIETYMQKAKSEKATVYIYGSK 140 D+ S E+ L Y G FD G +N + F+E+Y+++ K K Y Sbjct: 94 DKRSPEI-LGYSTSGSFDAN----------GKEN-IASFMESYVEQIKENKKLDTTYAGT 141 Query: 141 FG-PEPGADKIFGFKPTNGMHNIHMNQGNPIDT 172 +P + K IH NQGNP + Sbjct: 142 AEIKQPVVKSLLDSKG------IHYNQGNPYNL 168
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 32.9 bits (75), Expect = 0.002 Identities = 9/47 (19%), Positives = 19/47 (40%), Gaps = 6/47 (12%) Query: 335 LEQYDREHQADMVKTLEHFIDADSNVNTAAKALNIHVNTLNYRLKRI 381 L + + ++ L N AA L ++ NTL +++ + Sbjct: 433 LAEMEYPL---ILAALTA---TRGNQIKAADLLGLNRNTLRKKIREL 473
>PF06580#Sensor histidine kinase Length = 349 Score = 40.6 bits (95), Expect = 1e-05 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 8/53 (15%) Query: 405 LIRNSIDHGIESPEVRVNKGKPESGHVVLKAYHSGNHVFIEVEDDGAGLNRKK 457 L+ N I HGI P+ G ++LK V +EVE+ G+ + Sbjct: 263 LVENGIKHGIA--------QLPQGGKILLKGTKDNGTVTLEVENTGSLALKNT 307
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 69.5 bits (170), Expect = 4e-15 Identities = 34/148 (22%), Positives = 55/148 (37%), Gaps = 12/148 (8%) Query: 2 IRVLVVDDSAFMR---KMITDFLAAEVQIEVIGTARNGEEALKKIELLKPDVVTLDIEMP 58 +LV DD A +R +V+ N + I D+V D+ MP Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVR-----ITSNAATLWRWIAAGDGDLVVTDVVMP 58 Query: 59 VMNGTDTLRKIISIYK-LPVIMVSSQTQQGKDRTINCLEMGAFDFITKPSGAI-SLDLYK 116 N D L +I LPV+++S+Q I E GA+D++ KP + + Sbjct: 59 DENAFDLLPRIKKARPDLPVLVMSAQN--TFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116 Query: 117 IKEQLIERVIAAGLSRAQKPEAAVKESS 144 +R + +Q V S+ Sbjct: 117 RALAEPKRRPSKLEDDSQDGMPLVGRSA 144
>TYPE3IMQPROT#Type III secretion system inner membrane Q protein family signature. Length = 86 Score = 70.6 bits (173), Expect = 6e-20 Identities = 29/78 (37%), Positives = 45/78 (57%) Query: 4 EFVISMAEKAVYVTLMISGPLLAIALIVGLLVSIFQATTQIQEQTLAFIPKIVAVMLGLI 63 + ++ KA+Y+ L++SG +A I+GLLV +FQ TQ+QEQTL F K++ V L L Sbjct: 2 DDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLF 61 Query: 64 FFGPWMLSTILSFTTDLF 81 W +LS+ + Sbjct: 62 LLSGWYGEVLLSYGRQVI 79
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 272 bits (698), Expect = 2e-95 Identities = 109/218 (50%), Positives = 148/218 (67%) Query: 4 FINLFNSNSPTEVSSTVKLLLLLTVFSVAPGILILMTCFTRIVIVLSFVRTSLATQNMPP 63 + S V+ L+ +T + P IL++MT FTRI+IV +R +L T + PP Sbjct: 26 ITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPP 85 Query: 64 NQVLIGLALFLTFFIMAPTFSEINKEALTPLMDNKISLDEAYTKAEKPIKEYMSKHTRQK 123 NQVL+GLALFLTFFIM+P +I +A P + KIS+ EA K +P++E+M + TR+ Sbjct: 86 NQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALEKGAQPLREFMLRQTREA 145 Query: 124 DLALFMNYAKMKKPESIQDIPLTTMVPAYAISELKTAFQMGFMIFIPFLIIDMVVASVLM 183 DL LF A + + +P+ ++PAY SELKTAFQ+GF IFIPFLIID+V+ASVLM Sbjct: 146 DLGLFARLANTGPLQGPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLM 205 Query: 184 SMGMMMLPPVMISLPFKILLFVLVDGWYLIVKSLLDSF 221 ++GMMM+PP I+LPFK++LFVLVDGW L+V SL SF Sbjct: 206 ALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 97.6 bits (243), Expect = 3e-27 Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 1/117 (0%) Query: 4 RILIVDDAAFMRMMIKDILVKNGFDVVAEASDGAQAVEKFKEHSPDLVTMDITMPEMDGI 63 IL+ DD A +R ++ L + G+DV S+ A DLV D+ MP+ + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 64 TALKEIKQIDPQAKIIMCSAMGQQSMVIDAIQAGAKDFIVKPFQADRVLEAINKTLS 120 L IK+ P +++ SA I A + GA D++ KPF ++ I + L+ Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 126 bits (318), Expect = 1e-37 Identities = 51/118 (43%), Positives = 83/118 (70%), Gaps = 5/118 (4%) Query: 260 LPKRQGTAKKAAPVQVAPVEFQAFDHNEAAQGSRNNLDMLMDIPLSVTVELGRTKRSVKE 319 L +++ T K+A A FQ G+ ++D++MDIP+ +TVELGRT+ ++KE Sbjct: 23 LNEQKATTTKSA----ADAVFQQLGGG-DVSGAMQDIDLIMDIPVKLTVELGRTRMTIKE 77 Query: 320 ILELSAGSIIELDKLAGEPVDILVNQRIVAKGEVVVIEENFGVRVTDILSQADRLNNL 377 +L L+ GS++ LD LAGEP+DIL+N ++A+GEVVV+ + +GVR+TDI++ ++R+ L Sbjct: 78 LLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRL 135
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 45.7 bits (108), Expect = 7e-08 Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 7/71 (9%) Query: 4 SLYSGISGMKNFQTKLDVIGNNIANVNTVGFKKSRVTFKDMISQTVAGGSNVTNSKQIGL 63 + + +SG+ Q L+ NNI++ N G+ + S AGG +G Sbjct: 3 LINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGG-------WVGN 55 Query: 64 GAATSSIDVVH 74 G S + + Sbjct: 56 GVYVSGVQREY 66 Score = 41.9 bits (98), Expect = 1e-06 Identities = 10/43 (23%), Positives = 27/43 (62%) Query: 215 LEMSNVDLTDEFTEMIVAQRGFQSNSKIITTSDEILQELVNLK 257 +S V+L +E+ + Q+ + +N++++ T++ I L+N++ Sbjct: 504 QSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINIR 546
>FLGHOOKFLIK#Flagellar hook-length control protein signature. Length = 375 Score = 32.9 bits (74), Expect = 0.003 Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 10/106 (9%) Query: 333 SFTIRLNPENLGFVTIKVTNENGMFQSKIIASSQSAKELLEQHLPQLKQSLPNMSVQVDR 392 S +RL+P++LG V I + ++ Q ++++ Q + LE LP L+ L +Q+ + Sbjct: 258 SAELRLHPQDLGEVQISLKVDDNQAQIQMVSPHQHVRAALEAALPVLRTQLAESGIQLGQ 317 Query: 393 FTVPLQS--GDQQPVYGQTADHNKQQHQGQREQKNQQQSGDFGDML 436 + +S G QQ QQ Q QR ++ +G+ D L Sbjct: 318 SNISGESFSGQQQ--------AASQQQQSQRTANHEPLAGEDDDTL 355
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 35.4 bits (81), Expect = 2e-04 Identities = 24/151 (15%), Positives = 47/151 (31%), Gaps = 4/151 (2%) Query: 6 KQQSSFSPEQKRRKLSLQEVRKTHSHPDREEPENPEALMAFAKAEADRVSEEAKNQLEHT 65 K + + S E ++T + +E + AK E ++ E K + + Sbjct: 1073 KSNVKANTQTNEVAQSGSETKETQTTETKETATVEKE--EKAKVETEKTQEVPKVTSQVS 1130 Query: 66 LLQIEEEKNRWAEEKQRLIEEAKAEGYEEGMALGKAEAQAEYANLISRANAVMEMARQSV 125 Q + E + E R E +E + A E + +N + + Sbjct: 1131 PKQEQSETVQPQAEPAR--ENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTT 1188 Query: 126 EEKLESAEEEIIELSVALAKKVWRQKSDDKE 156 S E + A + +S +K Sbjct: 1189 VNTGNSVVENPENTTPATTQPTVNSESSNKP 1219
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 399 bits (1027), Expect = e-142 Identities = 191/336 (56%), Positives = 265/336 (78%) Query: 3 KRDQNKLTGKQKAAILMISLGLDVSASVYKHLSEEEIERLTLEISGVRSVDHQRKDEIIE 62 D + LTGKQKAAIL++S+G ++S+ V+K+LS+EEIE LT EI+ + ++ + KD ++ Sbjct: 9 ILDVSALTGKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKDNVLL 68 Query: 63 EFHNIAIAQDYISQGGLNYARQVLEKALGEDKAVSILNRLTSSLQVKPFDFARKAEPEQI 122 EF + +AQ++I +GG++YAR++LEK+LG KAV I+N L S+LQ +PF+F R+A+P I Sbjct: 69 EFKELMMAQEFIQKGGIDYARELLEKSLGTQKAVDIINNLGSALQSRPFEFVRRADPANI 128 Query: 123 LNFIQQEHPQTMALILSYLDPVQAGQILSELNPDVQAEVARRIAVMDRTSPEIINEVERV 182 LNFIQQEHPQT+ALILSYLDP +A ILS L +VQ VARRIA+MDRTSPE++ EVERV Sbjct: 129 LNFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVREVERV 188 Query: 183 LEQKLSSSFTQDYTQTGGIEAVVEVLNGVDRGTEKTILDSLEIQDPELADEIKKRMFVFE 242 LE+KL+S ++DYT GG++ VVE++N DR TEK I++SLE +DPELA+EIKK+MFVFE Sbjct: 189 LEKKLASLSSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEIKKKMFVFE 248 Query: 243 DIVTLDNRAIQRVIRDVENDDLLLSLKVASEEVKEIVFSNMSQRMVETFKEEMEIMGPVR 302 DIV LD+R+IQRV+R+++ +L +LK V+E +F NMS+R KE+ME +GP R Sbjct: 249 DIVLLDDRSIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDMEFLGPTR 308 Query: 303 LRDVEEAQSRIVGVVRKLEEAGEIVIARGGGDDIIV 338 +DVEE+Q +IV ++RKLEE GEIVI+RGG +D++V Sbjct: 309 RKDVEESQQKIVSLIRKLEEQGEIVISRGGEEDVLV 344
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 340 bits (874), Expect = e-113 Identities = 119/563 (21%), Positives = 235/563 (41%), Gaps = 49/563 (8%) Query: 9 KTKTAAFWNNRSKTQKILMVSGLAAFIILLIVVIIFTSSEKMVPLYKDLSAEEAGKIKEE 68 + K + N +I ++ +A + +++ ++++ + L+ +LS ++ G I + Sbjct: 9 QPKPLEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQ 68 Query: 69 LDTKKVSSELADGGTVIKVPESQVDSLKVQLAAEGLPKTGSIDYSFFGQNAGFGLTDNEF 128 L + A+G I+VP +V L+++LA +GLPK G++ + Q FG++ Sbjct: 69 LTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEK-FGISQFSE 127 Query: 129 DVLKVEATQTELSNLINEMDGIKSSKVMINMPKEAVFVGEDQPAASASIVLQMKPGYSLD 188 V A + EL+ I + +KS++V + MPK ++FV E + SAS+ + ++PG +LD Sbjct: 128 QVNYQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKS-PSASVTVTLEPGRALD 186 Query: 189 QNQINGLYHLVSKSVPNLKEDNIVIMDQNSTYYDKSDSGAGSVSDSYASQQGIKSQVEKD 248 + QI+ + HLVS +V L N+ ++DQ+ +S++ ++D +Q + VE Sbjct: 187 EGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLND---AQLKFANDVESR 243 Query: 249 IQKHVQSLLGTMMGQDKVVVSVTADVDFTKEKRTEDTVEP---VDKDNMEGIAVS-AEKV 304 IQ+ ++++L ++G V VTA +DF +++TE+ P K + ++ +E+V Sbjct: 244 IQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQV 303 Query: 305 AETYKGD--GAANGGTAGTGS---NDTANYAETNGGSNSGDYEKSSNKI----------- 348 Y G GA + A + + +SN Sbjct: 304 GAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRSTQRNETS 363 Query: 349 NYEVNRIHKEIAESPYKVRDLGIQVMVEPPNPKNAAS--LSAQRQADIQKILGTVVRTSL 406 NYEV+R + + + L + V+V + L+A + I+ + + S Sbjct: 364 NYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKPLPLTADQMKQIEDLTREAMGFSD 423 Query: 407 DKNET-----QNQNLTDNDINNKIVVSVQPFDGKTSLNTDSAQSSGLPIWVYITGGVLLA 461 + +T + DN Q F Q W+ + + Sbjct: 424 KRGDTLNVVNSPFSAVDNTGGELPFWQQQSF---------IDQLLAAGRWLLVLVVAWIL 474 Query: 462 AIILLIILLIRKKRSQEDEYEEY---EYETPPEPVRLPDINE-----EKIETEETVRRKQ 513 + L R+ + E+ + VRL + V ++ Sbjct: 475 WRKAVRPQLTRRVEEAKAAQEQAQVRQETEEAVEVRLSKDEQLQQRRANQRLGAEVMSQR 534 Query: 514 LEKMAKEKPEDFAKLLRSWLDED 536 + +M+ P A ++R W+ D Sbjct: 535 IREMSDNDPRVVALVIRQWMSND 557
>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE signature. Length = 103 Score = 76.6 bits (188), Expect = 7e-22 Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 1/88 (1%) Query: 20 TNQLNQTQKTDSSNQTSFSELLKNSIDSLNESQVKSDQITNELAAGK-DVNLDEVMIAAQ 78 T + Q++ SF+ L ++D ++++Q + + G+ V L++VM Q Sbjct: 16 TAMSARAQESLPQPTISFAGQLHAALDRISDTQTAARTQAEKFTLGEPGVALNDVMTDMQ 75 Query: 79 KANISLTAATEFRNKAVEAYQEIMRMQM 106 KA++S+ + RNK V AYQE+M MQ+ Sbjct: 76 KASVSMQMGIQVRNKLVAAYQEVMSMQV 103
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 29.2 bits (65), Expect = 0.006 Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 18/85 (21%) Query: 6 SLNISGSALTAQRVRMDVVSSNLANMDTTRAKQVNGEWMPYRRKLVSLQSGGESFSSLLH 65 +N + S L A + ++ S+N+++ + Y R+ + Sbjct: 3 LINNAMSGLNAAQAALNTASNNISSYNVA----------GYTRQTTIMAQAN-------- 44 Query: 66 SKMNGTGSAGSGVKVSGVTEDPSAF 90 S + G G+GV VSGV + AF Sbjct: 45 STLGAGGWVGNGVYVSGVQREYDAF 69
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 30.8 bits (69), Expect = 0.016 Identities = 15/73 (20%), Positives = 26/73 (35%) Query: 73 KAKKVYLAADPDREGEAIAWHLAHSLDLDLSSDCRVVFNEITKDAIKESFKHPRMINMDL 132 + K ++ GEA+A LA + D E ++K +H D+ Sbjct: 7 EGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADV 66 Query: 133 VDAQQARRILDRL 145 D+ I R+ Sbjct: 67 RDSAAIDEITARI 79
>TETREPRESSOR#Tetracycline repressor protein signature. Length = 218 Score = 26.4 bits (58), Expect = 0.045 Identities = 18/72 (25%), Positives = 27/72 (37%) Query: 2 TAQNQLVSHFLSHRNVTIELAEKISREHYDYKPAETSMSAQELVKHMVYSFLMFANVIND 61 Q L H + R + LA +I H+DY S Q +++ SF D Sbjct: 36 IEQPTLYWHVKNKRALLDALAVEILARHHDYSLPAAGESWQSFLRNNAMSFRRALLRYRD 95 Query: 62 GNASAIQNKPKE 73 G + +P E Sbjct: 96 GAKVHLGTRPDE 107
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 58.3 bits (141), Expect = 3e-12 Identities = 21/120 (17%), Positives = 44/120 (36%), Gaps = 5/120 (4%) Query: 2 IKILLIDDHIGVAQGTKAILEKSNKMGVTILSC--CKEVLNHLKHYEYDLLLLDLYMPEL 59 IL+ DD + L + G + + + + DL++ D+ MP+ Sbjct: 4 ATILVADDDAAIRTVLNQALSR---AGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 60 NGMELSKMILRESPDQKIIIYTGFDISAHFNLLVEVGVSGFISKSSTEEHMIKVIESVIE 119 N +L I + PD +++ + + E G ++ K +I +I + Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120
>PF06580#Sensor histidine kinase Length = 349 Score = 30.2 bits (68), Expect = 0.013 Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 7/67 (10%) Query: 328 IVQELLTNAVKH-----SKASYIVLTMIQKQTSLMFVYEDNGIGIDWNKVNSKTNSFGLT 382 +VQ L+ N +KH + I+L + ++ E+ G K ++ GL Sbjct: 259 LVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLA--LKNTKESTGTGLQ 316 Query: 383 GIKERIN 389 ++ER+ Sbjct: 317 NVRERLQ 323
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.4 bits (68), Expect = 0.012 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 8/31 (25%) Query: 25 DINLTLEKGKIYGLLGPNGAGKTTLLKVLLG 55 D ++ LE G G GK+TL+ L+G Sbjct: 596 DYSVVLE--------GTGGIGKSTLINTLVG 618
>PF06580#Sensor histidine kinase Length = 349 Score = 39.1 bits (91), Expect = 3e-05 Identities = 15/113 (13%), Positives = 41/113 (36%), Gaps = 11/113 (9%) Query: 338 EHFTIDIDLKENIVWEIDETWLKRILDNIFQNVLRHAHSGK----YVSVQTKLIENKPVI 393 + + + I +D ++ + +N ++H + + ++ + Sbjct: 238 DRLQFENQINPAI---MDVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTL 294 Query: 394 IIEDRGPGMNNKSERKGAGIGLSIINMMLKQM-GLEH--KIKSNQNGTIFIIY 443 +E+ G K+ ++ G GL + L+ + G E K+ Q ++ Sbjct: 295 EVENTGSLAL-KNTKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVL 346
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 64.5 bits (157), Expect = 3e-14 Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 5/112 (4%) Query: 4 ILYIEDDQEIGQFVKGDLEDRGYMIIWLTSSYNYETYIEKA--DLIVLDIMMPGLDGFTI 61 IL +DD I + L GY + +++ +I DL+V D++MP + F + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 62 GQRMKKTHPQIPLLLLTARTGLEDKLKGL--GFADDYVTKPFHPDELAARIE 111 R+KK P +P+L+++A+ +K G A DY+ KPF EL I Sbjct: 66 LPRIKKARPDLPVLVMSAQNTFMTAIKASEKG-AYDYLPKPFDLTELIGIIG 116
>PF07212#Hyaluronoglucosaminidase Length = 336 Score = 28.1 bits (62), Expect = 0.020 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 4/62 (6%) Query: 68 KITKYSSFSPVNNVIYMKAEPTEELK---SLSEKCYSGALSGEPEYSFV-PHVTVGQKLS 123 KITK S N +Y+KAE EL +L +G L +P S + P +VG ++ Sbjct: 72 KITKLESSKADKNAVYLKAESKIELDKKLNLKGGVMTGQLQFKPNKSGIKPSSSVGGAIN 131 Query: 124 SD 125 D Sbjct: 132 ID 133
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 36.5 bits (84), Expect = 1e-05 Identities = 22/114 (19%), Positives = 48/114 (42%), Gaps = 7/114 (6%) Query: 26 EQHVPEEEEIDQFEDTSEHIVIYDGGQPVGAGRWRMK---DGHGKLERICVMKSHRSLGV 82 +Q+ ++ ++ E+ + +Y GR +++ +G+ +E I V K +R GV Sbjct: 48 KQYEDDDMDVSYVEEEGKAAFLYYLENNC-IGRIKIRSNWNGYALIEDIAVAKDYRKKGV 106 Query: 83 GAIIMQALEKAAAAKGADSYILHAQTQAVP---FYEKQGYRVTSGEEFLDAGIP 133 G ++ + A +L Q + FY K + + + + L + P Sbjct: 107 GTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFIIGAVDTMLYSNFP 160
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 37.2 bits (86), Expect = 3e-05 Identities = 42/158 (26%), Positives = 68/158 (43%), Gaps = 6/158 (3%) Query: 85 SPLKTADYVIGYAIPMLPLAILQIVICFIAAAAAGLSAEWMNLLAGIAVLLPIAMMSVFF 144 + L+ D V+G A L + AAA G + +W++LL + V+ + Sbjct: 106 TQLRLGDIVLGEMAWAATKAALAGAGIGVVAAALGYT-QWLSLLYALPVIALTGLAFASL 164 Query: 145 GLCLGAVFTDKQISGI-GTIYITLVQFLGGAWMEVSLLGDTFKHIAYALPFIHSIELAQE 203 G+ + A+ T+ IT + FL GA V L F+ A LP HSI+L + Sbjct: 165 GMVVTALAPSYDYFIFYQTLVITPILFLSGAVFPVDQLPIVFQTAARFLPLSHSIDLIRP 224 Query: 204 VI-SGDYSSFHQHIWPIAGYTVLALALAFLSFMKIRKR 240 ++ QH+ + Y V+ FLS +R+R Sbjct: 225 IMLGHPVVDVCQHVGALCIYIVIPF---FLSTALLRRR 259
>cloacin#Cloacin signature. Length = 551 Score = 30.5 bits (68), Expect = 2e-04 Identities = 15/40 (37%), Positives = 16/40 (40%) Query: 2 GFGYGGFGGGYGGYGGCGGYGGGYVGGGYGSTFVLVVVLF 41 G G GG G GG G GG G G + V V F Sbjct: 51 GSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAF 90 Score = 24.3 bits (52), Expect = 0.025 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 2/31 (6%) Query: 2 GFGYGGFGGGYGGYGGCGGYGGGYVGGGYGS 32 G G G GG G+G GG G GGG G+ Sbjct: 49 GSGSGIHWGGGSGHGNGGGNGNS--GGGSGT 77 Score = 24.3 bits (52), Expect = 0.026 Identities = 12/30 (40%), Positives = 13/30 (43%) Query: 4 GYGGFGGGYGGYGGCGGYGGGYVGGGYGST 33 G G G +GG G G GG GG T Sbjct: 48 GGSGSGIHWGGGSGHGNGGGNGNSGGGSGT 77