PredictBias
identification of genomic and pathogenicity islands in prokaryotic genome
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Analyzed genomes
A) Input parameters
Genome
2819.gbk
Threshold dinucleotide bias
2
Threshold codon bias
4
Threshold %GC bias
3
E-value (RPSBlast)
0.05
Genome (non-pathogenic)
B) Compare a potential GI or PAI in related non-pathogenic sp. (
phylogenetic tree
)
Potential GI or PAI start
end
Select Organism
Prochlorococcus marinus str. NATL1A
Riemerella anatipestifer RA-CH-2
Bacillus anthracis str. Sterne
Staphylococcus aureus subsp. aureus JH9
Streptococcus pyogenes MGAS315
Burkholderia pseudomallei 1710b
Shewanella putrefaciens CN-32
Escherichia coli UTI89
Rhizobium etli CFN 42
Vibrio cholerae O1 biovar El Tor str. N16961
Pseudomonas stutzeri RCH2
Mycobacterium avium 104
Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044
Helicobacter pylori 26695
Pseudomonas syringae pv. phaseolicola 1448A
Burkholderia pseudomallei 1106a
Mycobacterium ulcerans Agy99
Escherichia coli O157:H7 str. EDL933
Shewanella sp. MR-4
Burkholderia cenocepacia MC0-3
Vibrio campbellii ATCC BAA-1116
Bacillus anthracis str. Ames
Staphylococcus aureus subsp. aureus MW2
Shewanella halifaxensis HAW-EB4
Escherichia coli APEC O1
Pseudomonas aeruginosa UCBPP-PA14
Shigella flexneri 2a str. 301
Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Bacillus cereus ATCC 10987
Streptococcus pyogenes MGAS10270
Bacillus thuringiensis str. Al Hakam
Yersinia pseudotuberculosis IP 31758
Staphylococcus aureus subsp. aureus COL
Vibrio parahaemolyticus RIMD 2210633
Staphylococcus aureus subsp. aureus JH1
Pseudomonas putida F1
Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC9150
Streptococcus pneumoniae CGSP14
Shewanella oneidensis MR-1
Pseudomonas putida W619
Acinetobacter baumannii AYE
Salmonella enterica subsp. enterica serovar Typhi str. CT18
Yersinia pestis KIM10+
Escherichia coli str. K-12 substr. MG1655
Shigella flexneri 5 str. 8401
Riemerella anatipestifer RA-CH-1
Pseudomonas syringae pv. syringae B728a
Escherichia coli E24377A
Corynebacterium diphtheriae NCTC 13129
Burkholderia multivorans ATCC 17616
Salmonella enterica subsp. enterica serovar Choleraesuis str.SC-B67
Clavibacter michiganensis subsp. michiganensis NCPPB 382
Brucella ovis ATCC 25840
Rhodopseudomonas palustris BisB5
Burkholderia pseudomallei K96243
Ralstonia solanacearum GMI1000
Rickettsia massiliae MTU5
Escherichia coli HS
Escherichia coli SE15
Streptococcus pyogenes MGAS2096
Shigella flexneri 2a str. 2457T
Escherichia coli SMS-3-5
Brucella suis ATCC 23445
Streptococcus pyogenes MGAS5005
Rhodopseudomonas palustris HaA2
Streptococcus pyogenes SSI-1
Shewanella pealeana ATCC 700345
Escherichia coli O157:H7 str. Sakai
Yersinia pseudotuberculosis IP 32953
Staphylococcus aureus subsp. aureus USA300_FPR3757
Burkholderia cenocepacia AU 1054
Streptococcus pyogenes MGAS10750
Burkholderia mallei NCTC 10247
Shewanella baltica OS155
Vibrio vulnificus YJ016
Salmonella enterica subsp. enterica serovar Minnesota
Sinorhizobium meliloti 1021
Streptococcus agalactiae A909
Pseudomonas aeruginosa PAO1
Streptococcus mitis B6
Bartonella tribocorum CIP 105476
Burkholderia ambifaria AMMD
Pseudomonas aeruginosa DHS01
Haemophilus influenzae Rd KW20
Mycobacterium avium subsp. paratuberculosis K-10
Staphylococcus aureus subsp. aureus Mu50
Streptococcus pyogenes M1 GAS
Burkholderia lata
Rickettsia canadensis str. McKiel
Streptococcus pyogenes MGAS8232
Staphylococcus aureus subsp. aureus Mu3
Xanthomonas campestris
Aeromonas hydrophila subsp. hydrophila ATCC 7966
Haemophilus influenzae PittGG
Vibrio vulnificus CMCP6
Shewanella sp. ANA-3
Shigella dysenteriae Sd197
Shewanella sp. MR-7
Shigella sonnei Ss046
Bacillus weihenstephanensis KBAB4
Haemophilus influenzae 86-028NP
Bacillus anthracis str. 'Ames Ancestor'
Burkholderia vietnamiensis G4
Xanthomonas campestris pv. campestris str. 8004
Streptococcus pneumoniae R6
Bacillus cereus ATCC 14579
Burkholderia thailandensis E264
Pseudomonas putida KT2440
Escherichia coli CFT073
Streptococcus agalactiae 2603V/R
Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188
Corynebacterium glutamicum R
Thermotoga maritima MSB8 MSB8
Francisella tularensis subsp. tularensis SCHU S4
Burkholderia pseudomallei 668
Staphylococcus aureus subsp. aureus NCTC 8325
Klebsiella pneumoniae subsp. pneumoniae HS11286
Bradyrhizobium sp. BTAi1
Clostridium botulinum A str. Hall
Riemerella anatipestifer ATCC 11845
Enterococcus faecium Aus0085
Streptococcus pyogenes MGAS10394
Staphylococcus aureus subsp. aureus N315
Yersinia pestis Angola
Acinetobacter baumannii ATCC 17978
Salmonella enterica subsp. enterica serovar Typhi str. Ty2
Prochlorococcus marinus str. MIT 9313
Shigella boydii Sb227
Streptococcus agalactiae NEM316
Brucella melitensis bv. 1 str. 16M
Escherichia coli 536
Pseudomonas syringae pv. tomato str. DC3000
Mycobacterium tuberculosis H37Rv
Pseudomonas putida GB-1
Streptococcus pneumoniae Hungary19A-6
Bradyrhizobium sp. ORS 278
Shewanella sp. W3-18-1
Burkholderia cenocepacia HI2424
Escherichia coli str. K-12 substr. DH10B
Bordetella petrii DSM 12804
Acinetobacter baumannii SDF
Bacillus halodurans C-125 C-125
Corynebacterium glutamicum ATCC 13032
Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7
Shewanella baltica OS185
Mycobacterium marinum M
Riemerella anatipestifer
Shewanella baltica OS195
Prochlorococcus marinus str. NATL2A
Burkholderia ambifaria MC40-6
C) Potential GIs and PAIs in NC_006155 (
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