>ADHESNFAMILY#Adhesin family signature. Length = 309 Score = 31.0 bits (70), Expect = 0.005 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 5/53 (9%) Query: 3 KKIFGFAAALLLTVGLAACGNNSDSKDSANKADDTTLKVGASPTPHAEILEHV 55 KK+ L + L AC + S K LKV A+ + A+I +++ Sbjct: 2 KKLGTLLVLFLSAIILVACASGKKDTTSGQK-----LKVVATNSIIADITKNI 49
>DNABINDNGFIS#DNA-binding protein FIS signature. Length = 98 Score = 26.1 bits (57), Expect = 0.012 Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 7/45 (15%) Query: 24 VLKPMLEDIISGVTLEYMDYQQ--ASEYLGVSVGTIRKYVSQYGL 66 V +P+L+ + ++Y Q A+ +G++ GT+RK + +YG+ Sbjct: 58 VEQPLLDMV-----MQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.8 bits (67), Expect = 0.033 Identities = 7/20 (35%), Positives = 11/20 (55%) Query: 545 EVFVKAGDQVSAGQLLINAD 564 E+ VK G+ V G +L+ Sbjct: 109 EIIVKEGESVRKGDVLLKLT 128
>VACJLIPOPROT#VacJ lipoprotein signature. Length = 251 Score = 27.9 bits (62), Expect = 0.043 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 2/28 (7%) Query: 1 MKKRFLALAIVLGTGLLSGCTNAGEKTA 28 MK R ALA LGT LL GC ++G Sbjct: 1 MKLRLSALA--LGTTLLVGCASSGTDQQ 26
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 39.3 bits (91), Expect = 7e-05 Identities = 34/197 (17%), Positives = 72/197 (36%), Gaps = 18/197 (9%) Query: 526 DTKDRMVDTASGLKEQVKDLPTNARYA-VYQGKSKVKENVRDLTSSISQTKADRASG--R 582 D + KE ++ N + V Q S+ KE T + + + + Sbjct: 1057 DATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVET 1116 Query: 583 KEQQEQRRKT--IAKRRSEMEQVKQKKQPASSVHERPTTRQEQYHDEQTSKQSNIQTSYK 640 ++ QE + T ++ ++ + E V+ + +PA PT ++ QT+ ++ Sbjct: 1117 EKTQEVPKVTSQVSPKQEQSETVQPQAEPARE--NDPTVNIKEP-QSQTNTTAD------ 1167 Query: 641 ESQQAKQERPAVKSDFSSPKVERQGNTVQEKTVQKPATSTTTADRTSQRPITKERPSTVQ 700 Q AK+ V+ + GN+V E P +T + + + +P Sbjct: 1168 TEQPAKETSSNVEQPVTESTTVNTGNSVVE----NPENTTPATTQPTVNSESSNKPKNRH 1223 Query: 701 RVPLQNTRSRPPIKTAT 717 R +++ T + Sbjct: 1224 RRSVRSVPHNVEPATTS 1240
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 53.0 bits (127), Expect = 2e-11 Identities = 25/100 (25%), Positives = 38/100 (38%), Gaps = 15/100 (15%) Query: 50 AGALFVYEENGTIVGSIIIDKVQPIEYATIPWKEKLSEDEVMVIHLLMVRPSMSGKGIAS 109 A F+Y +G I I W +++ V KG+ + Sbjct: 64 GKAAFLYYLENNCIGRIKIRS---------NWNGYALIEDIAV------AKDYRKKGVGT 108 Query: 110 SLIKFATELAQKNSCRALRLDTGSQNIPALSLYQKNGFEI 149 +L+ A E A++N L L+T NI A Y K+ F I Sbjct: 109 ALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFII 148
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 35.7 bits (82), Expect = 2e-05 Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 12/91 (13%) Query: 49 VYVYEDKQEIQGFIGLS---NEY--IEGIFVSAEMQSQGIGKILLNY-VKGKRNK----L 98 ++Y + G I + N Y IE I V+ + + +G+G LL+ ++ + L Sbjct: 67 AFLYYLENNCIGRIKIRSNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGL 126 Query: 99 ILNVYQKNTRAISFYQREGFEIQYSGLDEAT 129 +L N A FY + F I +D Sbjct: 127 MLETQDINISACHFYAKHHFII--GAVDTML 155
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 30.0 bits (67), Expect = 0.026 Identities = 33/236 (13%), Positives = 73/236 (30%), Gaps = 14/236 (5%) Query: 318 YAEMKQRGKNLSNLQEFAKSISYLQTHQIETMDDLQERIEELNGVVSVSKKEISEKRKQL 377 + + LSN +E + + + + +L+ R +L + + + ++ Sbjct: 84 KDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKI 143 Query: 378 KELENLEKMAEVIKTNQPLIDEYNHFYFQKRRERYYQQHKKEINYYRKCERELKQHLDKN 437 K LE EK A + F + + E + EL++ L+ Sbjct: 144 KTLEA-EKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGA 202 Query: 438 GKVPTARWKREKEELQAGIEELKADNQPYQEELTFVKKVQSCADIARRDREMAEADTSGR 497 TA + + L+A L A ++ L + + EA+ + Sbjct: 203 MNFSTAD-SAKIKTLEAEKAALAARKADLEKALEGAMNF---STADSAKIKTLEAEKAAL 258 Query: 498 SEEKREKQVKFPTFYTVQAKEILEENGKAEQQPLNQSEQNPEKKTSLLRKLDEKKK 553 + E + +A E A+ + E + L+ + + Sbjct: 259 EARQAELE---------KALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQ 305
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 30.1 bits (67), Expect = 0.040 Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 6/112 (5%) Query: 173 NATRLFSVLYHKNLTVGRVQTPTLKMLVDRDAKITDFKKEKYHIVHITAGGADAV----- 227 +A S+L +++ + V +L+ D + F E+Y +H A A Sbjct: 617 SAKAQLSILINRSGSWADVARQSLQRF-DSTRPVVKFGTEQYTAIHRQMMAAHAAITLQE 675 Query: 228 SSRFSDAAEANTVKAACAKAQAVCVSVTREKKTEQPPKLYDLTTLQREANRL 279 S F+D TV + Q S+ E EQ KL +LTT+ NRL Sbjct: 676 VSEFTDDMRNFTVDSIPLLIQLGRSSLMDEHLVEQREKLRELTTIAERLNRL 727
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 93.7 bits (233), Expect = 2e-24 Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 1/130 (0%) Query: 3 IRILLVEDDDHICNTVRAFLAEAGYQVDACTDGNEAYTKFYENTYQLVILDIMLPGMNGH 62 IL+ +DD I + L+ AGY V ++ + LV+ D+++P N Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 63 ELLREFRAKN-DTPILMMTALSDDENQIRAFDAEADDYVTKPFKMQILLKRVEALLRRSG 121 +LL + D P+L+M+A + I+A + A DY+ KPF + L+ + L Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 122 ALAKEIRVGR 131 ++ Sbjct: 124 RRPSKLEDDS 133
>MICOLLPTASE#Microbial collagenase metalloprotease (M9) signature. Length = 1104 Score = 29.7 bits (66), Expect = 0.030 Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 4/52 (7%) Query: 49 YQPLVELIQNSDRLDIQEVAGLFHYNNQSFEFYI-EDKEGSVLYATPNANTS 99 Y LVELI+ + V LF++N+ S+ F+ D+ +++Y ++ + Sbjct: 103 YSDLVELIKTIS---YENVPDLFNFNDGSYTFFSNRDRVQAIIYGLEDSGRT 151
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 68.2 bits (166), Expect = 9e-14 Identities = 43/232 (18%), Positives = 81/232 (34%), Gaps = 14/232 (6%) Query: 3 KKRTEAEVTFIANDDGLKSTLKEISAELTKNRAELKLEQAQLQQTGSESDKLGSKLSSLE 62 + T A L + ++ L + A+++ +E L ++ + LE Sbjct: 207 TADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELE 266 Query: 63 KQYELQSQKVEVTSQRLANAKKYYGENSTEVQKLERELINQQTAQQRLSNEIDKTSNALA 122 K E S ++ + E LE + +Q L ++D + A Sbjct: 267 KALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKK 326 Query: 123 QAKGEIQTYESTMQQLDSEQKNVQASASLIESEYKKWQATAGQSASESEKLAKAQEYVSQ 182 Q + E Q E EQ + + AS + + E+E K +E Sbjct: 327 QLEAEHQKLE--------EQNKI-SEASRQSLRRDLDASREAKKQLEAE-HQKLEE--QN 374 Query: 183 QSENAEKTIDILRRQLEATQSEFGATSTEAMQMEAKLNDAEREFEELGQAAK 234 + A + LRR L+A++ + +KL E+ +EL ++ K Sbjct: 375 KISEASRQ--SLRRDLDASREAKKQVEKALEEANSKLAALEKLNKELEESKK 424 Score = 66.6 bits (162), Expect = 3e-13 Identities = 43/315 (13%), Positives = 105/315 (33%), Gaps = 20/315 (6%) Query: 33 NRAELKLEQAQLQQTGSESDKLGSKLSSLEKQYELQSQKVEVTSQRLANAKKYYGENSTE 92 A QT +K+ + E + K S K + E + E Sbjct: 35 VNTNEVSAVATRSQT-DTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEE 93 Query: 93 VQKLERELINQQTAQQRLSNEIDKTSN-------ALAQAKGEIQTYESTMQQLDSEQKNV 145 + + +L + +++I + AL A + ++ L++E+ + Sbjct: 94 LSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAAL 153 Query: 146 QASASLIESEYKKWQATAGQSASESEKLAKAQEYVSQQSENAEKTIDILRRQLEATQSEF 205 A + +E + + +++ + L + + + EK ++ A ++ Sbjct: 154 AARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAK- 212 Query: 206 GATSTEAMQMEAKLNDAEREFEELGQAAKNVDTTNLDDIGSKIDMNNLMEASDVLSDIGD 265 +A L + + E+ + A N T + I + +EA Sbjct: 213 ---IKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQ------A 263 Query: 266 KLTELGKQAVDSANSVGSSQSKIQANFGLTKQEAEEL--TNVARDIYYKGFGESLDQSTD 323 +L + + A++ + + + ++A + E +L + + + LD S + Sbjct: 264 ELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASRE 323 Query: 324 ALILVKRNLGDLNNQ 338 A ++ L Q Sbjct: 324 AKKQLEAEHQKLEEQ 338 Score = 62.4 bits (151), Expect = 6e-12 Identities = 36/211 (17%), Positives = 77/211 (36%) Query: 19 LKSTLKEISAELTKNRAELKLEQAQLQQTGSESDKLGSKLSSLEKQYELQSQKVEVTSQR 78 + +K + AE A + L+ + S +K+ +LE + + + Sbjct: 139 DSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKA 198 Query: 79 LANAKKYYGENSTEVQKLERELINQQTAQQRLSNEIDKTSNALAQAKGEIQTYESTMQQL 138 L A + +S +++ LE E + L ++ N +I+T E+ L Sbjct: 199 LEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAAL 258 Query: 139 DSEQKNVQASASLIESEYKKWQATAGQSASESEKLAKAQEYVSQQSENAEKTIDILRRQL 198 ++ Q ++ + + A +E L + + QS+ LRR L Sbjct: 259 EARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDL 318 Query: 199 EATQSEFGATSTEAMQMEAKLNDAEREFEEL 229 +A++ E ++E + +E + L Sbjct: 319 DASREAKKQLEAEHQKLEEQNKISEASRQSL 349 Score = 60.1 bits (145), Expect = 3e-11 Identities = 33/219 (15%), Positives = 79/219 (36%), Gaps = 6/219 (2%) Query: 13 IANDDGLKSTLKEISAELTKNRAELKLEQAQLQQTGSESDKLGSKLSSLEKQYELQSQKV 72 ++N + +E EL+ +A L++ + + S+ K E + + Sbjct: 94 LSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAAL 153 Query: 73 EVTSQRLANAKKYY----GENSTEVQKLERELINQQTAQQRLSNEIDKTSNALAQAKGEI 128 L A + +S +++ LE E + Q L ++ N +I Sbjct: 154 AARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKI 213 Query: 129 QTYESTMQQLDSEQKNVQASASLIESEYKKWQATAGQSASESEKLAKAQEYVSQQSENAE 188 +T E+ L + + +++ + + A +E L Q + + E A Sbjct: 214 KTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAM 273 Query: 189 KTIDILRRQLEATQSEFGATSTEAMQM--EAKLNDAERE 225 +++ ++E A E + ++++ +A R+ Sbjct: 274 NFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQ 312 Score = 52.0 bits (124), Expect = 1e-08 Identities = 33/182 (18%), Positives = 80/182 (43%) Query: 19 LKSTLKEISAELTKNRAELKLEQAQLQQTGSESDKLGSKLSSLEKQYELQSQKVEVTSQR 78 L++ E+ L + A+++ +E L ++ + LE Q ++ + + + Sbjct: 258 LEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRD 317 Query: 79 LANAKKYYGENSTEVQKLERELINQQTAQQRLSNEIDKTSNALAQAKGEIQTYESTMQQL 138 L +++ + E QKLE + + ++Q L ++D + A Q + E Q E + Sbjct: 318 LDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKIS 377 Query: 139 DSEQKNVQASASLIESEYKKWQATAGQSASESEKLAKAQEYVSQQSENAEKTIDILRRQL 198 ++ +++++ K+ + ++ S+ L K + + + + EK L+ +L Sbjct: 378 EASRQSLRRDLDASREAKKQVEKALEEANSKLAALEKLNKELEESKKLTEKEKAELQAKL 437 Query: 199 EA 200 EA Sbjct: 438 EA 439
>PF06917#Periplasmic pectate lyase Length = 555 Score = 25.6 bits (56), Expect = 0.010 Identities = 7/22 (31%), Positives = 12/22 (54%) Query: 39 TGLGIYFFMKGKKREEAKEKNN 60 TGL +Y F ++R+ +N Sbjct: 260 TGLPVYQFSSPQQRQPIPADDN 281
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 28.1 bits (62), Expect = 0.031 Identities = 12/32 (37%), Positives = 18/32 (56%) Query: 41 GFFDDKQNKMQDLKYLGKINELNSWADSKKKI 72 GFF + + + LK K N +N W +S KK+ Sbjct: 981 GFFGNLEQTIDKLKDSTKHNPMNLWVESAKKV 1012
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.9 bits (64), Expect = 0.023 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 5/46 (10%) Query: 28 DTFTSIVAPSGAGKSTLLKTLTGVQ-----PMTSGTIKVDDQKVTG 68 D + G GKSTL+ TL G+ GT K +++ G Sbjct: 596 DYSVVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTGKDSYEQIAG 641
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 27.2 bits (60), Expect = 0.041 Identities = 19/79 (24%), Positives = 24/79 (30%), Gaps = 1/79 (1%) Query: 82 AQAAAEPQAAVQEAPVQAEQPVVQETVQTETQA-APVAETQPAPAVTETAATPASTSSAK 140 A A EP AVQ P +P + E APV +P P K Sbjct: 56 APADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPK 115 Query: 141 EWIAQKESSGSYTATNGRY 159 + ES + N Sbjct: 116 RDVKPVESRPASPFENTAP 134
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 29.4 bits (66), Expect = 0.010 Identities = 23/144 (15%), Positives = 52/144 (36%), Gaps = 18/144 (12%) Query: 58 SNMAEKLVNTDNVTAGINTEVGKKQVAVDLDV--IVEYGKDIEDIYNQIK----ELISTE 111 SN+ + L + V + + + + LD + +Y D+ NQ+K ++ + + Sbjct: 160 SNVKDTLSRLNGV-GDVQLFGAQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQ 218 Query: 112 VNNMTHLDVIEVNVNVA---DIKTQEEYQK-----DQETVQDKVTEAAK---STGQFASR 160 + L ++N ++ K EE+ K + + ++ + A+ + Sbjct: 219 LGGTPALPGQQLNASIIAQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVI 278 Query: 161 QTDKAKSAVGKGAQKVKENNEPRV 184 K A G G + N Sbjct: 279 ARINGKPAAGLGIKLATGANALDT 302
>PF08280#M protein trans-acting positive regulator Length = 530 Score = 36.7 bits (85), Expect = 3e-04 Identities = 24/159 (15%), Positives = 60/159 (37%), Gaps = 13/159 (8%) Query: 9 QLLKLLVTHKKVSIQEVQKEIKTSNQTIKKDIGELNEEIAGIAKIIQKNKHFELEIYDFD 68 QL+ L + I EV ++ + + ELN + + + + Sbjct: 48 QLVVLFFKTSSLPITEVAEKTGLTFLQLNHYCEELNAFFPDSLSMTIQKR-----MISCQ 102 Query: 69 FFDEIMQGKLKTASDFNSASKRIAYLLNRLIETEDFLRMDDLSEEVGVSRGTVVKDLKTL 128 F + L ++ + +A+L+ + D + +S + + + L Sbjct: 103 FTHPSKETYLYQLYASSNVLQLLAFLIKNGSHSRPLT---DFARSHFLSNSSAYRMREAL 159 Query: 129 KEMINDFDVKITGTPNKGLRIIGDELELRLLLFYFVSPY 167 ++ +F++K++ +I+G+E +R L+ S + Sbjct: 160 IPLLRNFELKLSKN-----KIVGEEYRIRYLIALLYSKF 193
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 106 bits (266), Expect = 8e-30 Identities = 73/272 (26%), Positives = 120/272 (44%), Gaps = 29/272 (10%) Query: 7 IAGKVVIVTGGSSGIGRSIVENLLKQNAQVANFDVT----ECRIQHENLLS-----LKVD 57 I GK+ +TG + GIG ++ L Q A +A D E + + D Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 58 VSSKTDIEEGIYKVMKHFKTIDGLVNNAGINIPSLLIDRNHPKSKYELSEQVFDKMIAVN 117 V I+E ++ + ID LVN AG+ P + LS++ ++ +VN Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVL---------RPGLIHSLSDEEWEATFSVN 116 Query: 118 QKSVYLMSQAVGRILVQKGSGVIVNLSSESGLEGSEGQSCYAATKAAMNSFTRSWAKELG 177 V+ S++V + ++ + SG IV + S + YA++KAA FT+ EL Sbjct: 117 STGVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELA 176 Query: 178 KRNVRVVGVAPGILE---ETGLRTQEYEEALSYTRGISVEQLRNGYSRTSTIPLGRSGKL 234 + N+R V+PG E + L E +G S+E + G IPL + K Sbjct: 177 EYNIRCNIVSPGSTETDMQWSLWADENGAE-QVIKG-SLETFKTG------IPLKKLAKP 228 Query: 235 QEVADLVCYYLSERSSYITGVTTNISGGKTRG 266 ++AD V + +S ++ +IT + GG T G Sbjct: 229 SDIADAVLFLVSGQAGHITMHNLCVDGGATLG 260
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 31.4 bits (71), Expect = 0.007 Identities = 40/212 (18%), Positives = 79/212 (37%), Gaps = 8/212 (3%) Query: 233 GLVKNRALLSIIGAAIFLLLAQLLIMSMNNYVFPDYYNDAQGIVLMNFINPILV-LIVVS 291 GL KN + + + +SM Y+ D + + + I P + +I+ Sbjct: 251 GLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFG 310 Query: 292 PLTLFLSKKYGKKELASVGMFFSAIVYLILFLIKTSNMYVFLILSSVGYMGLGVFNTVIW 351 + L + G + ++G+ F ++ +L + + + I+ GL TVI Sbjct: 311 YIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFTKTVIS 370 Query: 352 ANITDVIDDQEVKSDQREDGTVYAVYSFARKIGQALAGGVGGWTLSIIGYDSLANVQTGD 411 ++ + QE G ++ +F + + + G LSI D D Sbjct: 371 TIVSSSLKQQEA-------GAGMSLLNFTSFLSEGTGIAIVGGLLSIPLLDQRLLPMEVD 423 Query: 412 VLEKLYNASTLIPSICFLIVGLILFFLYPLSK 443 LY+ L+ S +I L+ +Y S+ Sbjct: 424 QSTYLYSNLLLLFSGIIVISWLVTLNVYKHSQ 455
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 34.3 bits (78), Expect = 6e-04 Identities = 33/169 (19%), Positives = 69/169 (40%), Gaps = 5/169 (2%) Query: 30 ETVETPKSEIVDTLPGEELPDVETELSGGASETPEQSQPEQPEKELIESEPEFPESTLPT 89 + +T +++ T+ EE VETE + + Q P+Q + E ++ + E PT Sbjct: 1093 KETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPT 1152 Query: 90 DPIEEEGVHGSTTTDSSTVTTPEQSGTTSSSEKTTDSSSTEQPTMSSTSEESKEEPSQPA 149 I+E + ++T T + + TSS+ + + ST T +S E + Sbjct: 1153 VNIKE-----PQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATT 1207 Query: 150 EKASEKSEAIPKENKPVVPAKEVTVSVTPSGEITTNTSQGTSVPIVTSN 198 + + +N+ + V +V P+ + + S + ++N Sbjct: 1208 QPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTN 1256 Score = 32.7 bits (74), Expect = 0.002 Identities = 38/202 (18%), Positives = 58/202 (28%), Gaps = 34/202 (16%) Query: 37 SEIVDTLPGEELPDVETELSGGASETPEQSQPEQPEKELIESEPEFPESTLPTDPIEEEG 96 E P P TE E S+ E E E + E+T + +E Sbjct: 1021 DEAPVPPPAPATPSETTET------VAENSKQESKTVEKNEQDAT--ETTAQNREVAKEA 1072 Query: 97 VHGSTTTDSSTVTTPEQSGTTSSSEKT--TDSSSTEQPTMSSTSEESKEEPSQPAEKASE 154 S+ + + S +T T ++ T++ E++K E + E Sbjct: 1073 -------KSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKV 1125 Query: 155 KSEAIPK---------------ENKPVVPAKEVTV--SVTPSGEITTNTSQGTSVPIVTS 197 S+ PK EN P V KE + T E + VT Sbjct: 1126 TSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTE 1185 Query: 198 NVEELTHIPTPTTPLKVESGQT 219 + T P T Sbjct: 1186 STTVNTGNSVVENPENTTPATT 1207 Score = 30.8 bits (69), Expect = 0.008 Identities = 26/140 (18%), Positives = 50/140 (35%), Gaps = 7/140 (5%) Query: 60 SETPEQSQPEQPEKELIESEPEFPESTLPTDPIEEEGVHGSTTTDSSTVTTPEQSGTTSS 119 TP Q + P E + P S TT++ + ++S T Sbjct: 997 ITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPAT---PSETTETVAENSKQESKTVEK 1053 Query: 120 SEKTTDSSSTEQPTMSSTSEESKEEPSQPAEKASEKSEAIPKENKPVVPAKEVTVSVTPS 179 +E+ ++ + ++ ++ + + +Q E A SE + + T +V Sbjct: 1054 NEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTT----ETKETATVEKE 1109 Query: 180 GEITTNTSQGTSVPIVTSNV 199 + T + VP VTS V Sbjct: 1110 EKAKVETEKTQEVPKVTSQV 1129
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 45.1 bits (106), Expect = 1e-06 Identities = 36/201 (17%), Positives = 71/201 (35%), Gaps = 10/201 (4%) Query: 21 TAQAHAEETTATQPTVEAIAQVASEVTEVQP--AEAGVPAGEATVEQAPVTE--APTVNS 76 T + AE + TVE Q A+E T A+ +A + V + + T + Sbjct: 1036 TTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKET 1095 Query: 77 KTTLDQTIGETQHPGNSPVTSQPVEETASIT--TPASETSTPEGEKAAEATPSVKPESSE 134 +TT + + + V ++ +E +T + + + AE P + Sbjct: 1096 QTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNI 1155 Query: 135 KQAEEKQRIEETVEQPAATADKEGKNEENVEKTISSTAASQNQPTKPNKESTASIEDQKK 194 K+ + + EQPA + T+++ + P + A+ + Sbjct: 1156 KEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNS---VVENPENTTPATTQPTVN 1212 Query: 195 KE-QDIPKTGTPTLLVTVPTN 214 E + PK + +VP N Sbjct: 1213 SESSNKPKNRHRRSVRSVPHN 1233 Score = 44.7 bits (105), Expect = 1e-06 Identities = 41/188 (21%), Positives = 66/188 (35%), Gaps = 12/188 (6%) Query: 24 AHAEETTATQPTVEAIAQVASEVTEVQPAEAGVPAGEATVEQAPVTEAPTVNSKTTLDQT 83 + Q V ++ E+ V A PA E TE NSK Sbjct: 995 TNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSET---TETVAENSKQESKTV 1051 Query: 84 IGETQHPGNSPVTSQPVEETASITTPASETSTPE----GEKAAEATPSVKPESSEKQAEE 139 Q + ++ V + A A T T E G + E + E++ + EE Sbjct: 1052 EKNEQDATETTAQNREVAKEAKSNVKA-NTQTNEVAQSGSETKETQTTETKETATVEKEE 1110 Query: 140 KQRIE--ETVEQPAATADKEGKNEENVEKTISSTAASQNQPTKPNKESTASIEDQKKKEQ 197 K ++E +T E P T+ K E++ + A +N PT KE + + + Sbjct: 1111 KAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQS--QTNTTADT 1168 Query: 198 DIPKTGTP 205 + P T Sbjct: 1169 EQPAKETS 1176 Score = 44.7 bits (105), Expect = 1e-06 Identities = 34/157 (21%), Positives = 55/157 (35%), Gaps = 8/157 (5%) Query: 23 QAHAEETTATQPTVEAIAQVASEVTEVQP-AEAGVPAGEATVEQAPVTEAPTVNSKTTLD 81 E+ + + +V S+V+ Q +E P E E P + Sbjct: 1106 VEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNI---KEPQSQT 1162 Query: 82 QTIGETQHPG--NSPVTSQPVEETASITTPASETSTPEGEKAAEATPSVKPESSEKQAEE 139 T +T+ P S QPV E+ ++ T S PE A P+V ESS K Sbjct: 1163 NTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNR 1222 Query: 140 KQRIEETV--EQPAATADKEGKNEENVEKTISSTAAS 174 +R +V AT ++ + S+ + Sbjct: 1223 HRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTNA 1259 Score = 31.2 bits (70), Expect = 0.022 Identities = 22/122 (18%), Positives = 45/122 (36%), Gaps = 10/122 (8%) Query: 92 NSPVTSQPVEETASITTPASETSTPEGEKA-------AEATPSVKPESSEKQAEEKQRIE 144 N V + + +I + E A P+ E++E AE ++ Sbjct: 989 NQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQES 1048 Query: 145 ETVEQPAATA-DKEGKNEENVEKTISSTAA--SQNQPTKPNKESTASIEDQKKKEQDIPK 201 +TVE+ A + +N E ++ S+ A N+ + E+ + + K+ + K Sbjct: 1049 KTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEK 1108 Query: 202 TG 203 Sbjct: 1109 EE 1110
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 30.3 bits (68), Expect = 0.012 Identities = 13/49 (26%), Positives = 28/49 (57%), Gaps = 2/49 (4%) Query: 219 VNRLVNCETANLNKTIDAASKQIENI-ELIEAKVGLHALPEKLQEIAEL 266 +N+LV+ A+LN +++ S+Q+ + ++ L+ + KLQ + L Sbjct: 188 INQLVD-TVASLNNNVNSFSQQLNTLGSVLSNTKHLNGVGNKLQNLPNL 235
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 127 bits (321), Expect = 3e-33 Identities = 64/225 (28%), Positives = 105/225 (46%), Gaps = 20/225 (8%) Query: 101 LPLIIKGNSGVGKSFLASLIYQYALDRKVIHNDAKFVVVNCADYANNPELLSAVLFGYKK 160 L L+I G SG GK +A ++ Y R+ + FV +N A A +L+ + LFG++K Sbjct: 161 LTLMITGESGTGKELVARALHDYG-KRR----NGPFVAINMA--AIPRDLIESELFGHEK 213 Query: 161 GAFTGAEKDTAGMLSSANGGYLFLDEVHNLSAENQEKLFLLMDSQKYRKLGESVQWEYAN 220 GAFTGA+ + G A GG LFLDE+ ++ + Q +L ++ +Y +G ++ Sbjct: 214 GAFTGAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGR-TPIRSD 272 Query: 221 VRLILATTEDKNTSLLA-TFR-----RRIPAEITLPDYNNRSTSEKIQLLFEFLKDEAIT 274 VR++ AT +D S+ FR R + LP +R +E I L +A Sbjct: 273 VRIVAATNKDLKQSINQGLFREDLYYRLNVVPLRLPPLRDR--AEDIPDLVRHFVQQAEK 330 Query: 275 IDSKIFC-SIELFTDLLSKTFEGNVGELRNEIK---LLCAEGYLG 315 + E + + + GNV EL N ++ L + + Sbjct: 331 EGLDVKRFDQEALELMKAHPWPGNVRELENLVRRLTALYPQDVIT 375
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 30.6 bits (69), Expect = 0.003 Identities = 8/19 (42%), Positives = 15/19 (78%) Query: 94 DIKVQEGQKVKAGDILMTI 112 +I V+EG+ V+ GD+L+ + Sbjct: 109 EIIVKEGESVRKGDVLLKL 127
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 31.6 bits (71), Expect = 0.013 Identities = 41/213 (19%), Positives = 70/213 (32%), Gaps = 25/213 (11%) Query: 501 ELNSDLKKQEQPVGTKKESRINLVGRKVGKVLDTKEIVKDKAKQAKNQVTDAPTNLKYSL 560 E ++ KQE K E +T ++ AK+AK+ V + + Sbjct: 1038 ETVAENSKQESKTVEKNEQDAT----------ETTAQNREVAKEAKSNVKANTQTNEVA- 1086 Query: 561 HKGMEKTKKVPEDFKRGPFEEKANRG--ELREKQRQ-RRDAKMDEKRKVLNEAWNRHEKG 617 G E + + K EK + E + Q + +++ K++ + E Sbjct: 1087 QSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPA 1146 Query: 618 RENVPIKKEIKPQKNELPENRSLKPRVQVHSNPE-------IKRKLSSQEVIP----NGS 666 REN P +PQ + +P + SN E +S P + Sbjct: 1147 RENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPAT 1206 Query: 667 TQPLSKNNSFQQVKQRFTFPKRTNQQVQRKKNT 699 TQP + S + K R R+ T Sbjct: 1207 TQPTVNSESSNKPKNRHRRSVRSVPHNVEPATT 1239
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 30.5 bits (68), Expect = 0.017 Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 7/71 (9%) Query: 33 LSPEQKFQVHDNFRQLIAQNREGKIHALQ-------IATESSIRATQERSKKEITGRLKE 85 +S Q + N +LI Q RE ++ ++ A ++++ +E +KK+ +++ Sbjct: 187 MSNPQNLSNNKNLSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQAEEAVRQ 246 Query: 86 VAKQRIDIQTD 96 AK +I I+TD Sbjct: 247 RAKDKISIKTD 257
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 96.8 bits (241), Expect = 2e-25 Identities = 36/139 (25%), Positives = 68/139 (48%), Gaps = 3/139 (2%) Query: 3 KILVVDDEPSIVTLLTFNLEKEGYKVTSATDGGEGLELALEQSFDFIILDVMLPTMDGME 62 ILV DD+ +I T+L L + GY V ++ D ++ DV++P + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 63 ITQRLRQEKNETPILMLTAKDDQVDRIIGLEIGADDYLTKPFSPREVLARMKAI--FRRI 120 + R+++ + + P+L+++A++ + I E GA DYL KPF E++ + + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 121 EPRKQSKDEAEPEYLSIGQ 139 P K D + L +G+ Sbjct: 125 RPSKLEDDSQDGMPL-VGR 142
>PF06580#Sensor histidine kinase Length = 349 Score = 34.8 bits (80), Expect = 8e-04 Identities = 19/109 (17%), Positives = 42/109 (38%), Gaps = 23/109 (21%) Query: 472 ILYPIIKNLIENAVQYSKSDSEIIIRYQATDD-LSFSVQDFGIGIDIEDQERIFERFYRV 530 ++ +++N I++ + +I+++ + ++ V++ G +E Sbjct: 259 LVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKE--------- 309 Query: 531 DKARSRHSGGTGLGLAIVKDYVQLLNG---TITVDSHLGTGSTFTVTIP 576 TG GL V++ +Q+L G I + G V IP Sbjct: 310 ---------STGTGLQNVRERLQMLYGTEAQIKLSEKQGKV-NAMVLIP 348
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 130 bits (329), Expect = 3e-36 Identities = 53/227 (23%), Positives = 113/227 (49%), Gaps = 20/227 (8%) Query: 42 LVHPMGQAITYLVENFNWSYGWAVIAMTVIVRIIILPLGISQSKKTMIQSEKMQALKPQV 101 + P+ + + ++ +F ++G+++I +T IVR I+ PL +K KM+ L+P++ Sbjct: 336 ISQPLFKLLKWI-HSFVGNWGFSIIIITFIVRGIMYPL----TKAQYTSMAKMRMLQPKI 390 Query: 102 EAAQQKLKAATTREEQMAAQAEMQQVYRENGLSMTGGIGCLPLLIQMPIFSALYFTARYT 161 +A +++L +++ EM +Y+ ++ GG C PLLIQMPIF ALY+ + Sbjct: 391 QAMRERLG-----DDKQRISQEMMALYKAEKVNPLGG--CFPLLIQMPIFLALYYMLMGS 443 Query: 162 EGIRESSFYG----IDLGSPSMVLVAIAGVAYLLQGYISTIGIPEEQKKTMRTMLIVSPA 217 +R++ F + P +L + GV +S + + ++ + T + P Sbjct: 444 VELRQAPFALWIHDLSAQDPYYILPILMGVTMFFIQKMSPTTVTDPMQQKIMTFM---PV 500 Query: 218 MIVFMSISAPAGVTLYWVVGGVFSCLQTFITN-VIMKPRLKAQVAEE 263 + + P+G+ LY++V + + +Q + + K L ++ ++ Sbjct: 501 IFTVFFLWFPSGLVLYYIVSNLVTIIQQQLIYRGLEKRGLHSREKKK 547
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 28.3 bits (63), Expect = 0.018 Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 6/50 (12%) Query: 74 PLQTANGIP-EALSNLWFRQEISIAEIEDAVLDAKNGKELANSLNRIKLF 122 PL A I + +SN + R + A + G L +L + LF Sbjct: 289 PLLQAMRISGDVMSNDYARH-----RLSLATDAVREGVSLHKALEQTALF 333
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 66.0 bits (161), Expect = 2e-14 Identities = 60/340 (17%), Positives = 114/340 (33%), Gaps = 66/340 (19%) Query: 7 KIYVAGHRGMAGSAIVRELNRQ-----------DYNNIITRTHK------------ELDL 43 K V G G G + + L DY ++ + + ++DL Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 44 CRQDAVEAFFAQEKPDYVF-LAA-AKVGGIIANQNALADFMYENMILEMNVINSAWKNGC 101 ++ + FA + VF V + N +A AD N+ +N++ N Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYAD---SNLTGFLNILEGCRHNKI 118 Query: 102 KKLQFLGSSCIYPRMAPQPMPESCLLTSELEKTNEA---YALAKISGLKYCEFLNKQYGT 158 + L + SS +Y + MP S + + YA K + + YG Sbjct: 119 QHLLYASSSSVYG--LNRKMP-----FSTDDSVDHPVSLYAATKKANELMAHTYSHLYGL 171 Query: 159 DYISVMPTNLYGPNDNYHPTHSHVLPALIRRFHEAKEAGLPTVTCWGDGSPLREFLYVDD 218 + +YGP P L + E K ++ + G R+F Y+DD Sbjct: 172 PATGLRFFTVYGPWGR--P--DMALFKFTKAMLEGK-----SIDVYNYGKMKRDFTYIDD 222 Query: 219 LANLCVFLMNN------------------YSGDETVNAGTGKELSIKELTEMVAKVIGYE 260 +A + L + + N G + + + + + +G E Sbjct: 223 IAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIE 282 Query: 261 GEILWDTSKPNGTPRKLLDVSKATK-LGWTYKTELEDGIR 299 + +P D + +G+T +T ++DG++ Sbjct: 283 AKKNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVK 322
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 89.8 bits (223), Expect = 2e-22 Identities = 45/173 (26%), Positives = 75/173 (43%), Gaps = 9/173 (5%) Query: 3 KALITGITGQDGSYLADFLLEKGYEVHGITRRASISNT----ARIDHL-MGKITLHDGDL 57 K L+TG G G +++ LLE G++V GI + AR++ L H DL Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 58 SDSSSLIRIISIVQPDEIYNLAAQSHVQVSFDVPEYSGDVDALGVMRILEACRILGLTKK 117 +D + + + + ++ + V+ S + P D + G + ILE CR + Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKI--- 118 Query: 118 TKIYQASTSELYGKVEEVPQRETTPF-HPYSPYAVAKQYGFWITKEYREAYGM 169 + AS+S +YG ++P HP S YA K+ + Y YG+ Sbjct: 119 QHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGL 171
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 123 bits (310), Expect = 1e-34 Identities = 68/343 (19%), Positives = 119/343 (34%), Gaps = 38/343 (11%) Query: 4 TIMVTGGCGMIGSNLVKRLVKEGCWDVYVADNLWRGKLEYLNDEDGHPVIDLDTHFFNAD 63 +VTG G IG ++ KRL++ G V DNL L + F D Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAG-HQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 64 LTDYEQAKKVIGTTE--YVVHLADVVAGIDYVFKNQGELFRINNLINSNVFDCCRKAGKE 121 L D E + + V + Y +N N N+ + CR Sbjct: 61 LADREGMTDLFASGHFERVFISP-HRLAVRYSLENPHAYADSNLTGFLNILEGCRHNK-- 117 Query: 122 KIKGVIYVGTVCSFPLTRQNTLNPEPLREEELFPALPESAYGWSKLMGQLEMGYLEKETG 181 I+ ++Y + + L R+ P ++ P S Y +K +L G Sbjct: 118 -IQHLLYASSSSVYGLNRKM-----PFSTDDS-VDHPVSLYAATKKANELMAHTYSHLYG 170 Query: 182 IPCCILMLHNVYGTPTDFGERSQVIPALIRKAINNPEEPFNVWGSGEQGRAFIHVNDIVN 241 +P L VYG +G + + + + +V+ G+ R F +++DI Sbjct: 171 LPATGLRFFTVYGP---WGRPDMALFKFTKAMLEG--KSIDVYNYGKMKRDFTYIDDIAE 225 Query: 242 ALVLALD------KGWGHGH------------IQIGPSHCTSIKEIAYKIIEISGKDIKP 283 A++ D W IG S + + + + G + K Sbjct: 226 AIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKK 285 Query: 284 FFDTSKPEGD-KARCADYSKAKEILDWKPTVSLEEGLRESYNW 325 +P GD AD E++ + P ++++G++ NW Sbjct: 286 NMLPLQP-GDVLETSADTKALYEVIGFTPETTVKDGVKNFVNW 327
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 31.2 bits (70), Expect = 0.014 Identities = 21/110 (19%), Positives = 36/110 (32%), Gaps = 5/110 (4%) Query: 532 EKKQEEEEIAELLAQDEPESAPAPTNKSDYYQSKEQQKLIRSLQRKITQVEEEMARIDEW 591 K E+ + + +SA T +++ + +Q L++ + Sbjct: 226 RKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQA---ELEKALEGAMNFSTADSAK 282 Query: 592 IDQLEQEMVAPENLEDHVKLNELNQDLEAARQDQETKLTEWEELSLELEE 641 I LE E + L +Q L A RQ L E +LE Sbjct: 283 IKTLEAEK--AALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEA 330
>PF04619#Dr-family adhesin Length = 160 Score = 26.4 bits (58), Expect = 0.017 Identities = 12/31 (38%), Positives = 13/31 (41%), Gaps = 5/31 (16%) Query: 38 WNGNYAYVVIGDQTVNYQDNTPVDKNTVNLT 68 W G V G QT NTP T+ LT Sbjct: 129 WGGIIGIYVDGQQT-----NTPPGNYTLTLT 154
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 30.9 bits (70), Expect = 0.006 Identities = 21/104 (20%), Positives = 42/104 (40%), Gaps = 14/104 (13%) Query: 144 RIQQAEAGLNDEEVERL--------QQLRKIKNPIEKNGKK-----LEIKREVMQDVQIS 190 I++ E+E+L ++LR IK+ E + V+ D ++ Sbjct: 28 DIEKTSITDVSTEIEKLTAALEKSKEELRAIKDQTEASMGADKAEIFAAHLLVLDDPELV 87 Query: 191 RKKHRKIDDI-LSIEDSLTRISNQLAKAIKQMNELYMNEYRTDL 233 KI++ ++ E +L +S+ + M+ YM E D+ Sbjct: 88 DGIKGKIENEQMNAEYALKEVSDMFVSMFESMDNEYMKERAADI 131
>PF06580#Sensor histidine kinase Length = 349 Score = 39.1 bits (91), Expect = 4e-05 Identities = 39/209 (18%), Positives = 70/209 (33%), Gaps = 54/209 (25%) Query: 415 PNFLKVTLDETDRMIR--------MINDLLNLSRMDTGNTQLQLEYVNFNELVNFVLDRF 466 P+F+ L+ +I M+ L L R + + V+ + + V Sbjct: 172 PHFMFNALNNIRALILEDPTKAREMLTSLSELMRYSLRYSNARQ--VSLADELTVVDSYL 229 Query: 467 DMMVGNQEKNYKIRREFTQRDLWVEVDTDK----------IIQ-VVDNIMNNAIKYSPDG 515 + I+ F R L E + ++Q +V+N + + I P G Sbjct: 230 QLA--------SIQ--FEDR-LQFENQINPAIMDVQVPPMLVQTLVENGIKHGIAQLPQG 278 Query: 516 GTITCRLLETHNNVILSITDQGLGIPKKDLNRVFERFYRVDKARARAQGGTGLGLAISRE 575 G I + + + V L + + G K + TG GL RE Sbjct: 279 GKILLKGTKDNGTVTLEVENTGSLALKNT------------------KESTGTGLQNVRE 320 Query: 576 VIKAHRG---AIWAESKEGKGSTFYISLP 601 ++ G I K+GK + + +P Sbjct: 321 RLQMLYGTEAQIKLSEKQGKVNAM-VLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 99.1 bits (247), Expect = 3e-26 Identities = 32/138 (23%), Positives = 71/138 (51%), Gaps = 2/138 (1%) Query: 3 KVLVVDDEKPISDIVKFNLAKEGYDVYTAYDGEEALEKVAEVEPDLILLDLMLPKMDGLE 62 +LV DD+ I ++ L++ GYDV + +A + DL++ D+++P + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 63 VAREVRKTY-DMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARV-KANLRRGA 120 + ++K D+P+++++A+++ + + E GA DY+ KPF EL+ + +A Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 121 TAAKEPEEAAPAELTIGD 138 +K +++ +G Sbjct: 125 RPSKLEDDSQDGMPLVGR 142
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 60.1 bits (145), Expect = 4e-11 Identities = 56/321 (17%), Positives = 110/321 (34%), Gaps = 20/321 (6%) Query: 24 NTLDEINAKVKQAESNMRANLKAYDSAGRSYEALSQKTKDLSTVMEGQNAKVRELTKRRD 83 ++ ++ A + A+ + AL+ + DL +EG + + Sbjct: 120 ARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIK 179 Query: 84 EAISKYGEESKQVANLNTQINNATAKYNAYSRQLNDTKKELVYSKTAVNDLSNEIKENER 143 ++ + A L + A A S ++ + E DL ++ Sbjct: 180 TLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMN 239 Query: 144 QMNAEVKALKAAGDESGAFEAKQKGLAKQTELSEKAIEEQRKVVKLMADEFGDSANETED 203 A+ +K E A EA+Q L EKA+E + + E Sbjct: 240 FSTADSAKIKTLEAEKAALEARQAEL-------EKALEGAMNFSTADSAKIKTLEAEKAA 292 Query: 204 AKRALEKLERQSQISSRQLEALK---SSSDQSGKEIEDFGDKSTR----SARKLDGLKDK 256 + LE QSQ+ + ++L+ +S ++ K++E K S L+ Sbjct: 293 LEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRD 352 Query: 257 LSSLKSAF--SFGAVAGLAHNAISSVVSGVQGLVGEAVNASDSLMKFSKTMEFANFGKSQ 314 L + + A L S S Q L + + ++ + K +E AN S+ Sbjct: 353 LDASREAKKQLEAEHQKLEEQNKISEAS-RQSLRRDLDASREAKKQVEKALEEAN---SK 408 Query: 315 IESSKKEMKDYADKTVYGLEE 335 + + +K K+ + +E Sbjct: 409 LAALEKLNKELEESKKLTEKE 429 Score = 40.0 bits (93), Expect = 6e-05 Identities = 20/157 (12%), Positives = 44/157 (28%), Gaps = 15/157 (9%) Query: 109 KYNAYSRQLNDTKKELVYSKTAVNDLSNEIKENERQMNAEVKALKAAGDESGAFEAKQKG 168 + + + + N K + L + E +++ + L+ +K + Sbjct: 58 RADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQE 117 Query: 169 LAKQTELSEKAIEEQRKVVKLMADEFGDSANETEDAKRALEK----LERQSQISSRQLEA 224 L + EKA+E + LE L + + LE Sbjct: 118 LEARKADLEKALEGAMNFST-----------ADSAKIKTLEAEKAALAARKADLEKALEG 166 Query: 225 LKSSSDQSGKEIEDFGDKSTRSARKLDGLKDKLSSLK 261 + S +I+ + + L+ L Sbjct: 167 AMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAM 203
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.4 bits (68), Expect = 0.009 Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 10/117 (8%) Query: 139 SLLDVLSGDSSKVEAEVLTNFAKSVESKGFEVEDVTLGVPDVDKETQKSIDAIIRAGQEN 198 ++++ AE +K+VE + + T +V KE + ++ A Q N Sbjct: 1027 PPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKA---NTQTN 1083 Query: 199 EKAKLDAETAKTQ-------ADSEAYKKTKAAEAEAESNRKVAESVTDNLIRYEEAQ 248 E A+ +ET +TQ A E +K K + + KV V+ + E Q Sbjct: 1084 EVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQ 1140
>ACETATEKNASE#Acetate kinase family signature. Length = 400 Score = 30.2 bits (68), Expect = 0.015 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 5/59 (8%) Query: 288 IKENKKIRWKLNIKKLRHYFIFDTKQDGTLPRGSYLYKKFKRFTKRHNLRHIRFHDIRH 346 IK +I + + +FDT T+P +YLY + ++ +R FH H Sbjct: 130 IKACTQI-----MPDVPMVAVFDTAFHQTMPDYAYLYPIPYEYYTKYKIRKYGFHGTSH 183
>MICOLLPTASE#Microbial collagenase metalloprotease (M9) signature. Length = 1104 Score = 28.1 bits (62), Expect = 0.028 Identities = 9/27 (33%), Positives = 15/27 (55%) Query: 18 GYKMNKKSGIETLPNYVFAGFWLRFFA 44 Y + GI TL ++ AG++L F+ Sbjct: 151 TYTADDDKGIPTLVEFLRAGYYLGFYN 177
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 82.6 bits (204), Expect = 4e-19 Identities = 79/448 (17%), Positives = 161/448 (35%), Gaps = 48/448 (10%) Query: 9 HSSIYTKQHHSFYRWVLYPVILFLCIIGLFLTFAKKEVVIRTTAQLNPEKIEKLQVPLEA 68 H + R V Y ++ FL I + + E+V +L K P+E Sbjct: 45 HLELIETPVSRRPRLVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIEN 104 Query: 69 KIMEN-FLKENQFVHKDDVLVRLDCSLIENEKAQIEQENQRITQQIKMAQLFIESISKGK 127 I++ +KE + V K DVL++L E + + + + + Q+ SI K Sbjct: 105 SIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNK 164 Query: 128 NLFSTDDSFGYSNQLKSMLSEKESLRYALKQSELNDQKQLEVYEKTKRQLEKQIESSDSK 187 Y +SE+E LR ++Q ++ K Q E ++ ++ Sbjct: 165 LPELKLPDEPYFQN----VSEEEVLRLT-----SLIKEQFSTWQNQKYQKELNLDKKRAE 215 Query: 188 LQEWQQVQVAWSNNQSLKDFSKEMMANYENWQEQLNNVSDDQKNQVKLTISASINEQIEQ 247 V + ++L K + ++ L + K+ V + + Sbjct: 216 RLT---VLARINRYENLSRVEKSRLDDF----SSLLHKQAIAKHAVL-----EQENKYVE 263 Query: 248 LKKEVEQYQSEKAKLVKPTTSENDRISQ-TEKGKQELEQAITTVKQTVTELNEKQEKNQS 306 E+ Y+S+ ++ S + T+ K E+ + + L + KN Sbjct: 264 AVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKN-- 321 Query: 307 VIKSLDDQLSKGILKAPVSGTVH-LNEETKGQAELAKGTVLAEIYPIHEKSKMKFTALLP 365 +++ +++APVS V L T+G + L I P E ++ TAL+ Sbjct: 322 -----EERQQASVIRAPVSVKVQQLKVHTEGGV-VTTAETLMVIVP--EDDTLEVTALVQ 373 Query: 366 ANESTYIKEGMKVHFKLD----QKGGAPITIDGTLDEISENSTATEKG--VFYAVKGTLK 419 + +I G K++ + G + G + I+ ++ ++ VF + + Sbjct: 374 NKDIGFINVGQNAIIKVEAFPYTRYG---YLVGKVKNINLDAIEDQRLGLVFNVIISIEE 430 Query: 420 TT-----QSFPFRYGLTGELSLIVGEKT 442 ++ P G+ + G ++ Sbjct: 431 NCLSTGNKNIPLSSGMAVTAEIKTGMRS 458
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 85.7 bits (212), Expect = 1e-21 Identities = 34/129 (26%), Positives = 64/129 (49%), Gaps = 2/129 (1%) Query: 6 TILIIEDDEAVHSLLEEVLEQR-YKLLDAYSGTEGKLLLSTYPVDLILLDLMLPGLSGEA 64 TIL+ +DD A+ ++L + L + Y + + ++ DL++ D+++P + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 65 LLAEIRQT-SNVPIIVLSAKSDQRDKVSLLAAGADDYVTKPFDIEELLLRIGIQLRHQTS 123 LL I++ ++P++V+SA++ + GA DY+ KPFD+ EL+ IG L Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 124 VQVKDLSQR 132 K Sbjct: 125 RPSKLEDDS 133
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 30.9 bits (69), Expect = 0.021 Identities = 32/132 (24%), Positives = 64/132 (48%), Gaps = 10/132 (7%) Query: 560 KGIEKTKKAPEEFKRGLVQEKANRGELREKQQQRRDEKIAEKRKVLNEIGNPHGKRRENV 619 K +E+ KKA E+ K Q + + + REK+++ R + A + N + NP N Sbjct: 139 KELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANLENLTNAMSNPQ-NLSNNK 197 Query: 620 PIKAKVQSQKDRAPKRIVRANSNPEIKRKFASQEIISKGINQSSSKKNSFQQVKRRS--T 677 + ++ Q++ ++ R E + A ++I + +KK + + V++R+ Sbjct: 198 NLSELIKQQRENELDQMERLEDMQEQAQANALKQI------EELNKKQAEEAVRQRAKDK 251 Query: 678 LSKRTNRKVQKS 689 +S +T+ K QKS Sbjct: 252 ISIKTD-KSQKS 262
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 28.6 bits (63), Expect = 0.033 Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 9/130 (6%) Query: 92 KEAIEKRMNNLEQYLTEEGFALSQDMVRADIPTNSEVQSVKVLDVEKSSEEFVVSFLVEQ 151 K + +++N L+Q LS + R+ + QS++ D S VV F EQ Sbjct: 601 KITLSQQLNTLQQQQESAKAQLSILINRSGSWADVARQSLQRFD----STRPVVKFGTEQ 656 Query: 152 KITEGKKAQSISSAY---RVTIFEDENRNYIVTSLPTMIAKPDRAKYKTKQVENDSKIDA 208 ++ + +A V+ F D+ RN+ V S+P +I + VE K+ Sbjct: 657 YTAIHRQMMAAHAAITLQEVSEFTDDMRNFTVDSIPLLIQLGRSSLMDEHLVEQREKLRE 716 Query: 209 KTTEEIAEFL 218 TT IAE L Sbjct: 717 LTT--IAERL 724
>FLGFLGJ#Flagellar protein FlgJ signature. Length = 313 Score = 68.2 bits (166), Expect = 1e-14 Identities = 48/155 (30%), Positives = 79/155 (50%), Gaps = 10/155 (6%) Query: 192 ENFIMKIGESARKIGQKYDLYASVMIAQAILESASGQSQLAQA---PNYNLFGIKGTYN- 247 + F+ ++ A+ Q+ + +++AQA LES GQ Q+ + P+YNLFG+K + N Sbjct: 150 KAFLAQLSLPAQLASQQSGVPHHLILAQAALESGWGQRQIRRENGEPSYNLFGVKASGNW 209 Query: 248 GNFVIMVTNEDLGNGTLYTTQSKFRVYENYEESFEDYAKLLTKGISGNKDFYAGALKANS 307 V +T + NG ++KFRVY +Y E+ DY LLT+ N + A A++ Sbjct: 210 KGPVTEITTTEYENGEAKKVKAKFRVYSSYLEALSDYVGLLTR----NPRYAAVTTAASA 265 Query: 308 KTYREATKFLTGRYATDTQYYLKLNELIKTYDLTN 342 + +A + YATD Y KL +I+ + Sbjct: 266 EQGAQALQ--DAGYATDPHYARKLTNMIQQMKSIS 298
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 34.8 bits (80), Expect = 6e-04 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 4/53 (7%) Query: 156 GAGYIGVEIAEAIRKRGKEVYLFDVADRVLSTYYDRSFSDKVEEILSKNGIHL 208 AG+IG +++ + + G +V D L+ YYD S E+L++ G Sbjct: 8 AAGFIGFHVSKRLLEAGHQVVGID----NLNDYYDVSLKQARLELLAQPGFQF 56
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 33.5 bits (76), Expect = 0.009 Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 1658 NEKDSEKAVSKDNKTDNQGSKQNKNRGKSSPQKQSSKAYPKTGEIDSNIFTISGGLILLG 1717 + K KAV + G+K N+N+ +P K++ + P TGE +N F + L ++ Sbjct: 470 DAKPGNKAVPGKGQAPQAGTKPNQNK---APMKETKRQLPSTGE-TANPFFTAAALTVMA 525 Query: 1718 TLGLLGYKNRKKEN 1731 T G+ RK+EN Sbjct: 526 TAGVAAVVKRKEEN 539
>adhesinb#Adhesin B signature. Length = 310 Score = 234 bits (599), Expect = 1e-75 Identities = 85/316 (26%), Positives = 150/316 (47%), Gaps = 16/316 (5%) Query: 1 MKKISVGLIGIAALGLLGACSSTNDAKVSNDKDGKLEIVTTFYPMYDFTKNIVGDEANVD 60 MKK ++ + A L ACSS + + KL +V T + D TKNI GD+ N+ Sbjct: 1 MKKCRFLVLLLLAFVGLAACSSQKSSTETGS--SKLNVVATNSIIADITKNIAGDKINLH 58 Query: 61 LMVPAGSEPHDYEPSAKDMAKAHDADVFVYHNENMES----WVPKAKESWKKAGPNVVEG 116 +VP G +PH+YEP +D+ K AD+ Y+ N+E+ W K E+ KK Sbjct: 59 SIVPVGQDPHEYEPLPEDVKKTSQADLIFYNGINLETGGNAWFTKLVENAKKKENKDYYA 118 Query: 117 TKDMILLPGSEEEDHDHGEEDHHHELDPHTWVSPKMAIKEVSNIKDQLVKLYPKKAKVFE 176 + + + E + E DPH W++ + I NI +L + P + +E Sbjct: 119 VSEGVDVIYLEGQSEKGKE-------DPHAWLNLENGIIYAQNIAKRLSEKDPANKETYE 171 Query: 177 TNAEKYLTKLKRLDADYTTSLKE--AKQKSFVTQHAAFGYLALDYGLIQVPIAGLSPEEE 234 N + Y+ KL LD + ++K VT F Y + Y + I ++ EEE Sbjct: 172 KNLKAYVEKLSALDKEAKEKFNNIPGEKKMIVTSEGCFKYFSKAYNVPSAYIWEINTEEE 231 Query: 235 PSSGRLAELKEYVKKNKINYIYFEKNANDKIAKTLANEAGIKLEVLNPLESLTKEQMDNG 294 + ++ L E ++K K+ ++ E + +D+ KT++ + I + +S+ ++ + G Sbjct: 232 GTPDQIKTLVEKLRKTKVPSLFVESSVDDRPMKTVSKDTNIPIYAKIFTDSVAEKG-EEG 290 Query: 295 EDYVSVMEDNLKALEK 310 + Y S+M+ NL+ + + Sbjct: 291 DSYYSMMKYNLEKIAE 306
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 40.8 bits (95), Expect = 8e-07 Identities = 15/36 (41%), Positives = 19/36 (52%) Query: 3 AGVTTGAFYKHFTSKEALFEEIIQPHINALINMYNE 38 AGVT GA Y HF K LF EI + + + + E Sbjct: 41 AGVTRGAIYWHFKDKSDLFSEIWELSESNIGELELE 76
>adhesinb#Adhesin B signature. Length = 310 Score = 419 bits (1078), Expect = e-150 Identities = 239/315 (75%), Positives = 278/315 (88%), Gaps = 5/315 (1%) Query: 2 MRKWKAVLGSLGILIALFIFGACSTNSKDKDTVASNEKLKVVVTNSILADITENIAKDKI 61 M+K + ++ +L+A ACS+ +T + KL VV TNSI+ADIT+NIA DKI Sbjct: 1 MKKCRFLVL---LLLAFVGLAACSSQKSSTET--GSSKLNVVATNSIIADITKNIAGDKI 55 Query: 62 DLHSIVPIGKDPHEYEPLPEDVQKTSKADLIFYNGVNLETGGNAWFTKLVKNANKEENKD 121 +LHSIVP+G+DPHEYEPLPEDV+KTS+ADLIFYNG+NLETGGNAWFTKLV+NA K+ENKD Sbjct: 56 NLHSIVPVGQDPHEYEPLPEDVKKTSQADLIFYNGINLETGGNAWFTKLVENAKKKENKD 115 Query: 122 YFAASDGIDVIYLEGQSEKGKEDPHAWLNLENGIIYAKNIEKQLAEKDPDNKKFYKENLD 181 Y+A S+G+DVIYLEGQSEKGKEDPHAWLNLENGIIYA+NI K+L+EKDP NK+ Y++NL Sbjct: 116 YYAVSEGVDVIYLEGQSEKGKEDPHAWLNLENGIIYAQNIAKRLSEKDPANKETYEKNLK 175 Query: 182 KYIEKLDSLDKEAKSKFASIPNDKKMIVTSEGCFKYFSKAYNVPSAYIWEINTEEEGTPD 241 Y+EKL +LDKEAK KF +IP +KKMIVTSEGCFKYFSKAYNVPSAYIWEINTEEEGTPD Sbjct: 176 AYVEKLSALDKEAKEKFNNIPGEKKMIVTSEGCFKYFSKAYNVPSAYIWEINTEEEGTPD 235 Query: 242 QIKHLVEKLRTTKVPSLFVESSVDDRPMKTVSKDTNIPIYSTIFTDSIAEKGQDGDSYYA 301 QIK LVEKLR TKVPSLFVESSVDDRPMKTVSKDTNIPIY+ IFTDS+AEKG++GDSYY+ Sbjct: 236 QIKTLVEKLRKTKVPSLFVESSVDDRPMKTVSKDTNIPIYAKIFTDSVAEKGEEGDSYYS 295 Query: 302 MMKWNLDKIAEGLSK 316 MMK+NL+KIAEGLSK Sbjct: 296 MMKYNLEKIAEGLSK 310
>BINARYTOXINB#Binary toxin B family signature. Length = 764 Score = 28.9 bits (64), Expect = 0.027 Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 16/128 (12%) Query: 18 TINENHVLK---GINLSLDP----GDFVTIIGGNGAGKSTLLNS---IAGTFSVDQGQIL 67 T+N N L+ L LD G+ T NG + ++ + +I+ Sbjct: 462 TMNYNQFLELEKTKQLRLDTDQVYGNIATYNFENGRVRVDTGSNWSEVLPQIQETTARII 521 Query: 68 LNGKNITKKSVVERSKSISRVFQDPKLGTAVRLTVEENLALAMKRGKKRG--FFRGVKPQ 125 NGK+ ++VER + + DP T +T++E L +A + G ++G Sbjct: 522 FNGKD---LNLVER-RIAAVNPSDPLETTKPDMTLKEALKIAFGFNEPNGNLQYQGKDIT 577 Query: 126 DRTFFKDQ 133 + F DQ Sbjct: 578 EFDFNFDQ 585
>ICENUCLEATIN#Ice nucleation protein signature. Length = 1258 Score = 32.8 bits (74), Expect = 0.004 Identities = 45/207 (21%), Positives = 80/207 (38%), Gaps = 2/207 (0%) Query: 328 FISDNGTDTTDTSDSTDTSTTSDSSDSSTSSDSTDTTSTTSDSTDTSASSDSTDTTSTTS 387 I+ G+ T +ST T+ + + SD T +T + D S+ +T T Sbjct: 304 LIAGYGSTQTAGEESTQTAGYGSTQTAQKGSDLTAGYGSTGTAGDDSSLIAGYGSTQTAG 363 Query: 388 DSTDTSASSDSTDTTSTTSDSTDTSASSDS--TDTTSTTSDSTDTSASSDSTDTTSTTSD 445 + + +A ST T SD T S+ + D++ + +A +ST T S Sbjct: 364 EDSSLTAGYGSTQTAQKGSDLTAGYGSTGTAGADSSLIAGYGSTQTAGEESTQTAGYGST 423 Query: 446 STDTSASSDSTDTSTTTSDSTDTSASSDSTDTTSTTSDSSDSSTTTSDSTDTSASSDSTD 505 T S + +T + D+S + T + DSS ++ S T S + Sbjct: 424 QTAQKGSDLTAGYGSTGTAGDDSSLIAGYGSTQTAGEDSSLTAGYGSTQTAQKGSDLTAG 483 Query: 506 TSSTTSDSSDSSTSSDSTDTSSTTSDT 532 ST++ +SS + T + + Sbjct: 484 YGSTSTAGYESSLIAGYGSTQTAGYGS 510 Score = 32.4 bits (73), Expect = 0.007 Identities = 42/216 (19%), Positives = 76/216 (35%), Gaps = 10/216 (4%) Query: 328 FISDNGTDTTDTSDSTDTSTTSDSSDSSTSSDSTDTTSTTSDSTDTSASSDSTDTTSTTS 387 FI + D ++ + D + + + + D+T S S+ T T + Sbjct: 104 FILHHRADYVACTEMQAGPGSPDVTSEVKVGNRSLPVTDDIDATIESGSTQPTQTIEIAT 163 Query: 388 DSTDTSASSDST-----DTTSTTSDSTDTSASSDSTDTTSTTSD-----STDTSASSDST 437 + S + S +T T DS+ A ST T S + +A +S+ Sbjct: 164 YGSTLSGTHQSQLIAGYGSTETAGDSSTLIAGYGSTGTAGADSTLVAGYGSTQTAGEESS 223 Query: 438 DTTSTTSDSTDTSASSDSTDTSTTTSDSTDTSASSDSTDTTSTTSDSSDSSTTTSDSTDT 497 S T S + +T + D+S + T + DSS ++ S T Sbjct: 224 QMAGYGSTQTGMKGSDLTAGYGSTGTAGDDSSLIAGYGSTQTAGEDSSLTAGYGSTQTAQ 283 Query: 498 SASSDSTDTSSTTSDSSDSSTSSDSTDTSSTTSDTR 533 S + ST + +DSS + T + ++ Sbjct: 284 KGSDLTAGYGSTGTAGADSSLIAGYGSTQTAGEEST 319 Score = 31.3 bits (70), Expect = 0.014 Identities = 43/207 (20%), Positives = 78/207 (37%), Gaps = 2/207 (0%) Query: 328 FISDNGTDTTDTSDSTDTSTTSDSSDSSTSSDSTDTTSTTSDSTDTSASSDSTDTTSTTS 387 ++ G+ T +S+ + + SD T +T + D S+ +T T Sbjct: 208 LVAGYGSTQTAGEESSQMAGYGSTQTGMKGSDLTAGYGSTGTAGDDSSLIAGYGSTQTAG 267 Query: 388 DSTDTSASSDSTDTTSTTSDSTDT--SASSDSTDTTSTTSDSTDTSASSDSTDTTSTTSD 445 + + +A ST T SD T S + D++ + +A +ST T S Sbjct: 268 EDSSLTAGYGSTQTAQKGSDLTAGYGSTGTAGADSSLIAGYGSTQTAGEESTQTAGYGST 327 Query: 446 STDTSASSDSTDTSTTTSDSTDTSASSDSTDTTSTTSDSSDSSTTTSDSTDTSASSDSTD 505 T S + +T + D+S + T + DSS ++ S T S + Sbjct: 328 QTAQKGSDLTAGYGSTGTAGDDSSLIAGYGSTQTAGEDSSLTAGYGSTQTAQKGSDLTAG 387 Query: 506 TSSTTSDSSDSSTSSDSTDTSSTTSDT 532 ST + +DSS + T + ++ Sbjct: 388 YGSTGTAGADSSLIAGYGSTQTAGEES 414
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 56.6 bits (136), Expect = 5e-11 Identities = 33/160 (20%), Positives = 60/160 (37%), Gaps = 34/160 (21%) Query: 141 VVTNNHVVDGQQGLEVLMK------------DGTKVKAELVGTDAYSDLAVLKINSDKVE 188 ++TN HVVD G +K +G ++ DLA++K + ++ Sbjct: 114 LLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGEGDLAIVKFSPNEQN 173 Query: 189 -------TVASFGDSSALKVGEPAIAIGSPLG-SEYANSVTSGIISSLNRQVTSTNESNE 240 A+ +++ +V + G P + G I+ L Sbjct: 174 KHIGEVVKPATMSNNAETQVNQNITVTGYPGDKPVATMWESKGKITYLK----------- 222 Query: 241 TVNINAIQTDAAINPGNSGGPLVNIEGQVIGINSSKIAST 280 A+Q D + GNSG P+ N + +VIGI+ + + Sbjct: 223 ---GEAMQYDLSTTGGNSGSPVFNEKNEVIGIHWGGVPNE 259
>56KDTSANTIGN#Rickettsia 56kDa type-specific antigen protein signature. Length = 533 Score = 26.8 bits (59), Expect = 0.041 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%) Query: 14 KYLIQGINEYVKRLNAYAKIELIEVPDEKAPENLSEAQMRQVKEKEGERILAKIKE 69 K L I + + +A I I VPD P + S Q+ Q K +E L ++++ Sbjct: 262 KVLSDKIIQIYSDIKPFADIAGINVPDTGLPNSASIEQI-QSKIQELGDTLEELRD 316
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 43.8 bits (103), Expect = 7e-08 Identities = 17/94 (18%), Positives = 42/94 (44%) Query: 1 MKKTDRRVKKTEKALAETLSTLLVNKKIQAITIRELTETADVHRSTFYTHYKDIYDLYDQ 60 +KT + ++T + + + L + + + ++ E+ + A V R Y H+KD DL+ + Sbjct: 2 ARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61 Query: 61 LESNFFRDLNEILSYDPAHSYEELYTRLIDYVYA 94 + ++ E+ A + + L + + Sbjct: 62 IWELSESNIGELELEYQAKFPGDPLSVLREILIH 95
>PF04183#IucA / IucC family Length = 580 Score = 27.5 bits (61), Expect = 0.044 Identities = 12/64 (18%), Positives = 26/64 (40%), Gaps = 7/64 (10%) Query: 142 TKLLTEFE------KREKGKEIFLFTDSGCTYQFYERRG-FERLKEKISKIKILDKEIDL 194 K+L+E E +G + + G ++F RG + L ++ D+ + Sbjct: 15 AKMLSELEYEQVFHAESQGDDRYCINLPGAQWRFIAERGIWGWLWIDAQTLRCADEPVLA 74 Query: 195 RCML 198 + +L Sbjct: 75 QTLL 78
>FLGFLGJ#Flagellar protein FlgJ signature. Length = 313 Score = 74.7 bits (183), Expect = 1e-16 Identities = 52/151 (34%), Positives = 86/151 (56%), Gaps = 12/151 (7%) Query: 460 FLKKIADDAQEIGQKEGIYASVMMAQAILESGSGNSLL---SSEPNHNLFGIK--GSYKG 514 FL +++ AQ Q+ G+ +++AQA LESG G + + EP++NLFG+K G++KG Sbjct: 152 FLAQLSLPAQLASQQSGVPHHLILAQAALESGWGQRQIRRENGEPSYNLFGVKASGNWKG 211 Query: 515 SSVTFNTLEQDSSGQSYQIRAQFRKYPSYKESLEDYADLIKNGLTGNPDFYKPTWKSETK 574 T E ++ G++ +++A+FR Y SY E+L DY L LT NP + T + + Sbjct: 212 PVTEITTTEYEN-GEAKKVKAKFRVYSSYLEALSDYVGL----LTRNPRYAAVTTAASAE 266 Query: 575 DYKEATKYLEGRYATDRQYSQKLNAIIEAYD 605 +A + + YATD Y++KL +I+ Sbjct: 267 QGAQALQ--DAGYATDPHYARKLTNMIQQMK 295
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 26.6 bits (59), Expect = 0.029 Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 9/64 (14%) Query: 38 EKIDLAVSNGLPSFLS---------VLENVLEELEVQSIELAEEIKTMNPEILEKIKLLL 88 E+I + + P + E V + S E+ E ++ I+ + + L Sbjct: 216 ERIKHEIGSAYPGDEVREIEVRGRNLAEGVPRGFTLNSNEILEALQEPLTGIVSAVMVAL 275 Query: 89 PDTP 92 P Sbjct: 276 EQCP 279
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 60.0 bits (145), Expect = 4e-13 Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 2/124 (1%) Query: 75 TDMGGMTASVPPEFTDLLLKDSLKDTDNMLTITKYNPSAFFGTSLDLQLRRRGIETIILS 134 TD G + P ++ L D+ L +TK+ SAF T+L +R+ G + +I++ Sbjct: 92 TDFWGPGLNSGPYEEKII--TELAPEDDDLVLTKWRYSAFKRTNLLEMMRKEGRDQLIIT 149 Query: 135 GVATTNGVYATALDAFQHGYHIVLAEDACSDRDKESHQLFIKKIFPKTARVRSTKQIIEA 194 G+ G TA +AF DA +D E HQ+ ++ + A T +++ Sbjct: 150 GIYAHIGCLVTACEAFMEDIKAFFVGDAVADFSLEKHQMALEYAAGRCAFTVMTDSLLDQ 209 Query: 195 IQQS 198 +Q + Sbjct: 210 LQNA 213
>PF05272#Virulence-associated E family protein Length = 892 Score = 34.7 bits (79), Expect = 4e-04 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 9/65 (13%) Query: 47 KGELVIIL-GPSGAGKSTILNILGGM----DTPDEGQIIIDDTDIAQ----FSDKQLTAY 97 K + ++L G G GKST++N L G+ DT + D + + ++TA+ Sbjct: 594 KFDYSVVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTGKDSYEQIAGIVAYELSEMTAF 653 Query: 98 RRTDV 102 RR D Sbjct: 654 RRADA 658
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 48.5 bits (115), Expect = 1e-07 Identities = 43/292 (14%), Positives = 89/292 (30%), Gaps = 14/292 (4%) Query: 53 VGTAGLSDLQIVSTGGLTQKDIAQAEKIPDAKVETGKQIYYSNTG----------KNEVI 102 GTA ++ V GL + ++ +T +++ KN + Sbjct: 17 TGTASVAVALTVLGAGLVVNTNEVSAVATRSQTDTLEKVQERADKFEIENNTLKLKNSDL 76 Query: 103 QIFSYNKNNKQNKLQLTDGKLPEKPNQLVLDEKAEDEGYKIGDIYQIDSDELKEKEYTIT 162 + + ++L EK + +E KI ++ +D K E + Sbjct: 77 SFNNKALKDHNDELTEELSNAKEKLRKN-DKSLSEKAS-KIQELEARKADLEKALEGAMN 134 Query: 163 GFVRSPLFINNLERGYANVGNGSVDYFVYLPESVFKTDIYSVLYLDFTNVKNLNTYSKAY 222 I LE A + D L ++ + S K +A Sbjct: 135 FSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAE 194 Query: 223 KDKMEQNQEKAEKYLQDRPEERLEELKKSANEELEPAQQKIADGKAQTTQARTRLEDAKK 282 +K + + + LE K + ++ + +T +++ + Sbjct: 195 LEKALEGAMNFSTADSAK-IKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEA 253 Query: 283 QLAQQSATIQQLPEAQRTIAVQTLSQQEAQLAEQERQLVEKERELASAEEEL 334 + A A +L E A+ + A++ E + E E A E + Sbjct: 254 EKAALEARQAEL-EKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQS 304 Score = 35.4 bits (81), Expect = 0.001 Identities = 19/115 (16%), Positives = 34/115 (29%), Gaps = 10/115 (8%) Query: 220 KAYKDKMEQNQEKAEKYLQDRPEERLEELKKSANEELEPAQQKIADGKAQTTQARTRLED 279 + + + K + ++ LE + + LE A A+ Sbjct: 235 EGAMNFSTADSAKIKTLEAEK--AALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAA 292 Query: 280 AKKQLAQQSATIQQLPEAQRTIAVQTLSQQEAQLAEQERQLVEKERELASAEEEL 334 + + A Q L A R Q+L + L + E E EE+ Sbjct: 293 LEAEKADLEHQSQVL-NANR----QSLRRD---LDASREAKKQLEAEHQKLEEQN 339
>ADHESNFAMILY#Adhesin family signature. Length = 309 Score = 249 bits (636), Expect = 5e-81 Identities = 81/317 (25%), Positives = 151/317 (47%), Gaps = 19/317 (5%) Query: 1 MKRLIGILAMLVLAGMLTACGASGKAEDSKEKLSVMTTFYPMYDFTKAIVGDEGEVELLI 60 MK+L +L + + A +L AC + K S +KL V+ T + D TK I GD+ ++ ++ Sbjct: 1 MKKLGTLLVLFLSAIILVACASGKKDTTSGQKLKVVATNSIIADITKNIAGDKIDLHSIV 60 Query: 61 PAGTDSHDYEPSAKDMAKIQDTDIFVYNDENMET-----WVPAIQKTLQEGNVHTIKATE 115 P G D H+YEP +D+ K + D+ YN N+ET + ++ + N ++ Sbjct: 61 PIGQDPHEYEPLPEDVKKTSEADLIFYNGINLETGGNAWFTKLVENAKKTENKDYFAVSD 120 Query: 116 GMLLLPGSEEGHDHDHEHGEEGHTHELDPHVWLAPSLAIKQVANIRDQLIEAYPEKQEVW 175 G+ ++ + DPH WL I NI QL P +E + Sbjct: 121 GVDVIYLEGQNEKGKE-----------DPHAWLNLENGIIFAKNIAKQLSAKDPNNKEFY 169 Query: 176 TKNAAAYTEKLQALHQLYQETFKQ--AKQRSFVTQHAAFNYLALEYGLNQVSIAGLSSSE 233 KN YT+KL L + ++ F + A+++ VT AF Y + YG+ I +++ E Sbjct: 170 EKNLKEYTDKLDKLDKESKDKFNKIPAEKKLIVTSEGAFKYFSKAYGVPSAYIWEINTEE 229 Query: 234 EPSAARIAELKHFVKEHGINYIYFEENAKDSIARTLANEAGVSLEVLNPLEGLTNEQIEN 293 E + +I L +++ + ++ E + D +T++ + + + + + EQ + Sbjct: 230 EGTPEQIKTLVEKLRQTKVPSLFVESSVDDRPMKTVSQDTNIPIYAQIFTDSIA-EQGKE 288 Query: 294 GENYLSIMEANLEALKK 310 G++Y S+M+ NL+ + + Sbjct: 289 GDSYYSMMKYNLDKIAE 305
>PF04647#Accessory gene regulator B Length = 212 Score = 133 bits (336), Expect = 2e-41 Identities = 39/182 (21%), Positives = 78/182 (42%), Gaps = 6/182 (3%) Query: 12 ALFSGDKSEEDMVYVQVKFALEVLLNNLGKLAVVLVFSLVTGSWAETGITFLSYICIRRY 71 A + D+S+ ++++ +EV L + ++ ++L+ + V G E LS RR+ Sbjct: 9 AEWLVDRSDYPFNQEEIRYGIEVFLGTVFQIIIILLVAFVIGLAKEVAFCLLSAAVYRRF 68 Query: 72 AYGLHSDSEFVCLLWTLLYLWGVPLVMKHLQLTISFPMMVFLLISC-FLLLLRYGSRGTA 130 + G H + + C L +LL ++ V + HL F +++ + L LL Sbjct: 69 SGGAHCEKYYRCTLTSLL-VFNVLAYIAHLIDPAYFQLLILIAFITSLLALLFLVPVDNP 127 Query: 131 INPI-EPEKRPPLLKKAISMFLIFSLITLFFSASYFSTYLL---LGIVLEIATLLPITNY 186 N I E+R L K + ++ ++ Y L LG++ + TL + + Sbjct: 128 RNLISNTEQRKTLKLKTSMVLMVLFGGSIGAYRLYTHQIALAILLGVLWQTFTLTALGHK 187 Query: 187 LM 188 + Sbjct: 188 FI 189
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 31.6 bits (71), Expect = 0.005 Identities = 38/212 (17%), Positives = 67/212 (31%), Gaps = 24/212 (11%) Query: 51 GKNSSEAKSTTITETTT-----KKTETKQTSESSTKTKETQTSEEKTANGLPEQLQAIVN 105 + + EAKS T T +ETK+T + TK T EEK + + Sbjct: 1066 REVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEV--- 1122 Query: 106 DYSKKIEEKTPALIEEYQTEIQGNQEGIAGLSAVANQKARELQAISDEGIRKLRAAYQAA 165 K + +P + + Q + + + +D Q A Sbjct: 1123 --PKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTE--------QPA 1172 Query: 166 ENKDGVDLDTLINQLSANYTNHVAKISDIYLQTSASLQAESTSTQDTTSSDSETAESVEA 225 + + + N N V + + + S S+ + + SV Sbjct: 1173 KETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPH 1232 Query: 226 SEMQARTTQD------TTDSSETNTNSATSQA 251 + A T+ + D + TNTN+ S A Sbjct: 1233 NVEPATTSSNDRSTVALCDLTSTNTNAVLSDA 1264 Score = 28.9 bits (64), Expect = 0.030 Identities = 33/198 (16%), Positives = 69/198 (34%), Gaps = 12/198 (6%) Query: 51 GKNSSEAKSTTITETTTKKTETKQTSESSTKTKETQTSEEKTANGLPEQLQA-IVNDYSK 109 G + E ++T ET T + E K E T++TQ + T+ P+Q Q+ V ++ Sbjct: 1089 GSETKETQTTETKETATVEKEEKAKVE----TEKTQEVPKVTSQVSPKQEQSETVQPQAE 1144 Query: 110 KIEEKTPALIEEYQTEIQGNQEGIAGLSAVANQKARELQAISDEGIRKLRAAYQAAENKD 169 E P + + + + + + + + EN Sbjct: 1145 PARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVT-ESTTVNTGNSVVENPENTT 1203 Query: 170 GVDLDTLINQLSANYTNHVAKIS------DIYLQTSASLQAESTSTQDTTSSDSETAESV 223 +N S+N + + S ++ T++S + + D TS+++ S Sbjct: 1204 PATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTNAVLSD 1263 Query: 224 EASEMQARTTQDTTDSSE 241 ++ Q S+ Sbjct: 1264 ARAKAQFVALNVGKAVSQ 1281
>STREPTOPAIN#Streptopain (C10) cysteine protease family signature. Length = 398 Score = 30.4 bits (68), Expect = 0.013 Identities = 10/57 (17%), Positives = 20/57 (35%), Gaps = 2/57 (3%) Query: 59 RALGEMLYVDPSTGSFANYASEYIHPVAGYLTAWSNIFQYIVVGIS--EVIAVGSYM 113 + L + Y S + N+ ++ W+NI S + +A+ M Sbjct: 209 KGLKDYTYTLSSNNPYFNHPKNLFAAISTRQYNWNNILPTYSGRESNVQKMAISELM 265
>adhesinb#Adhesin B signature. Length = 310 Score = 366 bits (940), Expect = e-129 Identities = 178/310 (57%), Positives = 234/310 (75%), Gaps = 3/310 (0%) Query: 4 KKSLFLILAVSFLVLAGCGKQASDQADEGSKEKLSVVATNSILADMAKEVGTDQIDIHSI 63 K ++L ++F+ LA C Q S SK L+VVATNSI+AD+ K + D+I++HSI Sbjct: 3 KCRFLVLLLLAFVGLAACSSQKSSTETGSSK--LNVVATNSIIADITKNIAGDKINLHSI 60 Query: 64 VPVGTDPHEYEVLPEDIKKASDADVILYNGLNLETG-NSWFDNLMETAKKEEGKDYFAVS 122 VPVG DPHEYE LPED+KK S AD+I YNG+NLETG N+WF L+E AKK+E KDY+AVS Sbjct: 61 VPVGQDPHEYEPLPEDVKKTSQADLIFYNGINLETGGNAWFTKLVENAKKKENKDYYAVS 120 Query: 123 KNVEPLYLTSGEEHTKADPHAWLDLSNGIKYVEEIARIFSEKDAENATLYKKNAEAYVEK 182 + V+ +YL E K DPHAWL+L NGI Y + IA+ SEKD N Y+KN +AYVEK Sbjct: 121 EGVDVIYLEGQSEKGKEDPHAWLNLENGIIYAQNIAKRLSEKDPANKETYEKNLKAYVEK 180 Query: 183 LKELDTQAKESFASIEENKKLLVTSEGAFKYFSRAYDLPAAYIWEINTESQGTPDQMKAI 242 L LD +AKE F +I KK++VTSEG FKYFS+AY++P+AYIWEINTE +GTPDQ+K + Sbjct: 181 LSALDKEAKEKFNNIPGEKKMIVTSEGCFKYFSKAYNVPSAYIWEINTEEEGTPDQIKTL 240 Query: 243 IDQIRAKEVPVLFVETSVDSRSMERVAKETGLKIYDKLFTDSIAKEGEQGDSYYQMMKWN 302 ++++R +VP LFVE+SVD R M+ V+K+T + IY K+FTDS+A++GE+GDSYY MMK+N Sbjct: 241 VEKLRKTKVPSLFVESSVDDRPMKTVSKDTNIPIYAKIFTDSVAEKGEEGDSYYSMMKYN 300 Query: 303 IETIHEGLSQ 312 +E I EGLS+ Sbjct: 301 LEKIAEGLSK 310
>CHLAMIDIAOM6#Chlamydia cysteine-rich outer membrane protein 6 signature. Length = 547 Score = 28.1 bits (62), Expect = 0.027 Identities = 15/48 (31%), Positives = 25/48 (52%) Query: 86 ATTENKTTENTASTTETATQEHTYVAPVETVEVAPAAPAAATAPTSSS 133 + + K +NT+ ++ A + H+ PV+ EVAP + AT P S Sbjct: 40 SLADTKAKDNTSHKSKKARKNHSKETPVDRKEVAPVHESKATGPKQDS 87
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 71.4 bits (175), Expect = 1e-16 Identities = 31/136 (22%), Positives = 66/136 (48%), Gaps = 2/136 (1%) Query: 2 AKIMVVEDEEIIRQLIMEELEKWQFETFGTTDFNQVFSDFEREEPQLVLLDINLPVLDGY 61 A I+V +D+ IR ++ + L + ++ T++ ++ + LV+ D+ +P + + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 62 YWCQKIREV-SKVPIIFISSRNTNMDMIMAMNMGADDFVTKHFQIDVLIAKI-NALLRRS 119 +I++ +P++ +S++NT M I A GA D++ K F + LI I AL Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 120 YNYTELSSEMMSHNGI 135 ++L + + Sbjct: 124 RRPSKLEDDSQDGMPL 139
>PF06580#Sensor histidine kinase Length = 349 Score = 31.4 bits (71), Expect = 0.005 Identities = 26/119 (21%), Positives = 43/119 (36%), Gaps = 31/119 (26%) Query: 222 LTDAKWIAFIFNQLLSNAIKY----TPDHGNIIVSIEKEAQGVSLSVKDSGIGIPAEDLK 277 + D + + L+ N IK+ P G I++ K+ V+L V++ Sbjct: 250 IMDVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVEN----------- 298 Query: 278 RIFDKGFTGRNGRLSKTHSTGLGLYLAKNLAEKLGI------HLTAESTEGKGTTMTLF 330 TG + STG GL N+ E+L + + +GK M L Sbjct: 299 -------TGSLALKNTKESTGTGLQ---NVRERLQMLYGTEAQIKLSEKQGKVNAMVLI 347
>INVEPROTEIN#Salmonella/Shigella invasion protein E (InvE) signature. Length = 372 Score = 28.9 bits (64), Expect = 0.032 Identities = 21/94 (22%), Positives = 36/94 (38%) Query: 34 TTSQQAEIDQLQEQQTAARLIDKLPAERQEQAKQLAAKIDANDAQSVISYGSAAQAKLSE 93 T +QQAEI Q E + + K E + LA + D + S S + ++ E Sbjct: 28 TDAQQAEIQQAAEDSSPGAEVQKFVQSTDEMSAALAQFRNRRDYEKKSSNLSNSFERVLE 87 Query: 94 FSQSMLNHVQAQDIGPVGDSLTELMYRLQEANPD 127 + I G +L + + + + PD Sbjct: 88 DEALPKAKQILKLISVHGGALEDFLRQARSLFPD 121
>SECFTRNLCASE#Bacterial translocase SecF protein signature. Length = 333 Score = 29.0 bits (65), Expect = 0.013 Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 11/56 (19%) Query: 9 LLALVLLFLFVRNNSFSFVLGLLLIGVVL----------VLWGLFGSRRKKGKQEE 54 LLALV + ++ + FV ++ GV + G R K K++ Sbjct: 265 LLALVPMLIWGGDVIRGFVF-AMVWGVFTGTYSSVYVAKNIVLFIGLDRNKEKKDP 319
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 27.0 bits (59), Expect = 0.011 Identities = 12/59 (20%), Positives = 27/59 (45%), Gaps = 2/59 (3%) Query: 14 KRQQAQASESLKKQRKA--ETAYQQEEKKIASFYRKESKKNKPITKTRISEREKTTKWN 70 + + + + +++K+ KA ET QE K+ S + ++++ + RE N Sbjct: 1096 QTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVN 1154
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 49.6 bits (118), Expect = 1e-09 Identities = 24/79 (30%), Positives = 35/79 (44%) Query: 102 KRHYSAFSGTDLDIRLRERQITDIYLTGVCTDICVLHTAVDAYNLGYKLHIFKDAVASFD 161 K YSAF T+L +R+ + +TG+ I L TA +A+ K DAVA F Sbjct: 123 KWRYSAFKRTNLLEMMRKEGRDQLIITGIYAHIGCLVTACEAFMEDIKAFFVGDAVADFS 182 Query: 162 PVGHEWALRHFESTLGAEI 180 H+ AL + + Sbjct: 183 LEKHQMALEYAAGRCAFTV 201
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 31.6 bits (71), Expect = 0.018 Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 11/81 (13%) Query: 1012 KPERENP-GNESPNGKPNGKPSHPDRTAKESEKNGTQG----------LPKTGEFNNPLL 1060 K +++P+ KP K A ++ Q LP TGE NP Sbjct: 457 KLRAGKASDSQTPDAKPGNKAVPGKGQAPQAGTKPNQNKAPMKETKRQLPSTGETANPFF 516 Query: 1061 ALAGGILLIGVVVYVMKQRKK 1081 A ++ V + +RK+ Sbjct: 517 TAAALTVMATAGVAAVVKRKE 537
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 36.8 bits (85), Expect = 8e-06 Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 5/101 (4%) Query: 40 DEAHCIHFVLYSDKKEPQGTVRLLPLENGKMKLQRMAILSEYRHQGLGKILIEEAENFAK 99 +E F+ Y + G +++ NG ++ +A+ +YR +G+G L+ +A +AK Sbjct: 61 EEEGKAAFLYYLEN-NCIGRIKIRSNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAK 119 Query: 100 NQGYNTILLGAQST---AETFYEKLGYTAYG-DPFEDAGMP 136 + ++L Q A FY K + D + P Sbjct: 120 ENHFCGLMLETQDINISACHFYAKHHFIIGAVDTMLYSNFP 160
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 29.4 bits (66), Expect = 0.025 Identities = 14/52 (26%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 66 MKAKIKRIWAVAIVLLLLVAAIIWILLS-VIPSLVQQISSLASNMPDFIKQV 116 M+++I++ VL ++ A++ ILLS V+P +V+Q + +P + + Sbjct: 165 MRSRIQQAMIYPCVLTVVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVL 216
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 227 bits (580), Expect = 5e-69 Identities = 113/457 (24%), Positives = 209/457 (45%), Gaps = 44/457 (9%) Query: 12 NRRTFAIISHPDAGKTTITEQLLLFGGAIRQAGTVKGKKTGNFAKSDWMEIEKQRGISVT 71 +++H DAGKTT+TE LL GAI + G+V T ++D +E+QRGI++ Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTT----RTDNTLLERQRGITIQ 57 Query: 72 SSVMQFDYQGKRVNILDTPGHEDFSEDTYRTLMAVDSAVMVIDSAKGIEAQTKKLFQVVK 131 + + F ++ +VNI+DTPGH DF + YR+L +D A+++I + G++AQT+ LF ++ Sbjct: 58 TGITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALR 117 Query: 132 KRGIPIFTFINKLDRDGREPLELLEELEELLDIESYPMNWPIGMGKGLEGLYDIYHNRVE 191 K GIP FINK+D++G + + ++++E L E + + + V Sbjct: 118 KMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIK----------QKVELYPNMCVT 167 Query: 192 FYRPENYQDERLVELDEDGLLPENHPLTENSLYEQVLEEVELIKEAGDAFNQEKIARGDQ 251 + E+ Q + ++E ++D L E+ + L + + Sbjct: 168 NF-TESEQWDTVIEGNDD-------------LLEKYMSGKSLEALELEQEESIRFHNCSL 213 Query: 252 TPVFFGSALTNFGVQTFLETFVELAPAPYGHKTQDDQMVSPYEEEFSGFVFKIQANMNPA 311 PV+ GSA N G+ +E + T Q E G VFKI Sbjct: 214 FPVYHGSAKNNIGIDNLIEVITNKFYSS----THRGQ------SELCGKVFKI---EYSE 260 Query: 312 HRDRIAFVRICSGTFERGMDVWLERTNKKLKLSNVTQFMADSRENVEKAVAGDIIGVYDT 371 R R+A++R+ SG D +K+K++ + + ++KA +G+I+ + + Sbjct: 261 KRQRLAYIRLYSGVLHLR-DSVRISEKEKIKITEMYTSINGELCKIDKAYSGEIVILQNE 319 Query: 372 GNYQIGDTLFEGKLKVAYEELPSFTPELFMKVTAKNVMKQKSFHKGIYQLVQEG-AIQLY 430 ++ L + KL E + + P L V +++ + ++ ++ Y Sbjct: 320 F-LKLNSVLGDTKLLPQRERIENPLPLLQTTVEPSKPQQREMLLDALLEISDSDPLLRYY 378 Query: 431 KTYLTEEYIIGAVGQLQFEVFQYRMLNEYNAEVIMSP 467 T E I+ +G++Q EV + +Y+ E+ + Sbjct: 379 VDSATHEIILSFLGKVQMEVTCALLQEKYHVEIEIKE 415
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 31.3 bits (71), Expect = 0.013 Identities = 40/157 (25%), Positives = 61/157 (38%), Gaps = 31/157 (19%) Query: 113 QARQGDIDPVIGRDDEIKRVIEILNRRTKNN-PVLI-GEPGVGKTAVVEGLAQ------- 163 + D P++GR ++ + +L R + + ++I GE G GK V L Sbjct: 130 EDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHDYGKRRNG 189 Query: 164 ---KIVDGDVPQKLMDKEVIRLDVVSLVQGTGIRGQFEERMQKLIEEIRQAENVILFIDE 220 I +P+ L++ E + G +G F + QAE LF+DE Sbjct: 190 PFVAINMAAIPRDLIESE---------LFGHE-KGAFTGAQTRSTGRFEQAEGGTLFLDE 239 Query: 221 VHEIVGAGSAGDGNMDAGNILKPALARGELQMVGATT 257 + GD MDA L L +GE VG T Sbjct: 240 I---------GDMPMDAQTRLLRVLQQGEYTTVGGRT 267
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 800 bits (2068), Expect = 0.0 Identities = 353/575 (61%), Positives = 455/575 (79%), Gaps = 4/575 (0%) Query: 1 MVEMLKGIAASDGVAVAKAYLLVQPDLTFSKATVEDTAAEEARLDAALAKSTEELQQIRE 60 M + GIAAS GVA+AKA++ ++P++ K ++ D + E +L AAL KS EEL+ I++ Sbjct: 1 MHHKITGIAASSGVAIAKAFIHLEPNVDIEKTSITDVSTEIEKLTAALEKSKEELRAIKD 60 Query: 61 KAAQSLGEAEAQVFDAHLMVLSDPEMVGQIKQNIKDNSVNAESALKEVTDMYIGMFEAME 120 + S+G +A++F AHL+VL DPE+V IK I++ +NAE ALKEV+DM++ MFE+M Sbjct: 61 QTEASMGADKAEIFAAHLLVLDDPELVDGIKGKIENEQMNAEYALKEVSDMFVSMFESM- 119 Query: 121 DNAYMQERAADIRDVAKRILAHLLGVTLPNPSMINEEVVVVAHDLTPSDTAQLDRNFVKA 180 DN YM+ERAADIRDV+KR+L HL+GV + + I EE V++A DLTPSDTAQL++ FVK Sbjct: 120 DNEYMKERAADIRDVSKRVLGHLIGVETGSLATIAEETVIIAEDLTPSDTAQLNKQFVKG 179 Query: 181 FVTDIGGRTSHSAIMARSLEIPAIVGTKEITAKVKEGDILAVNGIEGDVIIDPTDEQKAE 240 F TDIGGRTSHSAIM+RSLEIPA+VGTKE+T K++ GD++ V+GIEG VI++PT+E+ Sbjct: 180 FATDIGGRTSHSAIMSRSLEIPAVVGTKEVTEKIQHGDMVIVDGIEGIVIVNPTEEEVKA 239 Query: 241 FEKAGADYAAQKAEWEKLKNAETVTADGKHFELAANIGTPKDLVGVHNNGGEAVGLYRTE 300 +E+ A + QK EW KL + T DG H ELAANIGTPKD+ GV NGGE +GLYRTE Sbjct: 240 YEEKRAAFEKQKQEWAKLVGEPSTTKDGAHVELAANIGTPKDVDGVLANGGEGIGLYRTE 299 Query: 301 FLYMDSPDFPTEDDQYEAYKAVLEGMEGKPVVVRTMDIGGDKELPYLQLPHEMNPFLGYR 360 FLYMD PTE++Q+EAYK V++ M+GKPVV+RT+DIGGDKEL YLQLP E+NPFLG+R Sbjct: 300 FLYMDRDQLPTEEEQFEAYKEVVQRMDGKPVVIRTLDIGGDKELSYLQLPKELNPFLGFR 359 Query: 361 ALRISLSEQGDEMFRTQMRALLRASVHGNLRIMFPMVATLKEFRAAKAIFEEEKQKLISE 420 A+R+ L +Q ++FRTQ+RALLRAS +GNL++MFPM+ATL+E R AKAI +EEK KL+SE Sbjct: 360 AIRLCLEKQ--DIFRTQLRALLRASTYGNLKVMFPMIATLEELRQAKAIMQEEKDKLLSE 417 Query: 421 GKEVSDTIQVGIMIEIPAAAVLADKFAKEVDFFSVGTNDLIQYTMAADRMNERVSYLYQP 480 G +VSD+I+VGIM+EIP+ AV A+ FAKEVDFFS+GTNDLIQYTMAADRMNERVSYLYQP Sbjct: 418 GVDVSDSIEVGIMVEIPSTAVAANLFAKEVDFFSIGTNDLIQYTMAADRMNERVSYLYQP 477 Query: 481 YNPSILRLIKNVIDAAHAEGKWAGMCGEMAGDQTAVPLLVGMGLDEFSMSATSILKTRSL 540 Y+P+ILRL+ VI AAH+EGKW GMCGEMAGD+ A+PLL+G+GLDEFSMSATSIL RS Sbjct: 478 YHPAILRLVDMVIKAAHSEGKWVGMCGEMAGDEVAIPLLLGLGLDEFSMSATSILPARSQ 537 Query: 541 MKRLDTAKMAELADRALKECDTMEEVVELVHEYVK 575 + +L ++ A +AL DT EEV +LV + Sbjct: 538 LLKLSKEELKPFAQKAL-MLDTAEEVEQLVKKTYL 571
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 686 bits (1771), Expect = 0.0 Identities = 222/575 (38%), Positives = 334/575 (58%), Gaps = 13/575 (2%) Query: 1 MSFDGVFTHAMVNELRETLLSGRISKIHQPYENEIVLVIRSRGKNHRLLLSAHPSYARVQ 60 M+ DG+F +++++EL+ T+++G+I K++QP ++EI+L IR + +LL+S+ +Y R+ Sbjct: 1 MALDGIFLYSIIDELKNTIINGKIDKVNQPEKDEIILNIRKGRLSFKLLISSSSNYPRIH 60 Query: 61 ITQIDYQNPDNPPNFVMMLRKYLDGAILEDIEQIENDRVIHFHFAKRNELGDLQNIILIV 120 +T + NP P F M+LRKY+ A + DI QI DR++ F +ELG LI+ Sbjct: 61 LTDLTKPNPIKAPMFCMVLRKYISNAKIVDIHQINQDRIVVIDFESTDELGFNSIYSLII 120 Query: 121 ELMGRHSTIVLVNRETGKILDAIKHIGSSQNTYRSLLPGVEYVAPPKQEVLNPFSSEKEK 180 E+MGRHS + L+ + I+D+IKHI NTYRS+ PG+EYV PPK LNPF + Sbjct: 121 EIMGRHSNMTLIRKRDNIIMDSIKHITPDINTYRSIYPGIEYVYPPKSPKLNPFDFSYDM 180 Query: 181 IFQRLSQT--ELDPKAIQRQFQGIGFDIAQELTKRL--------LERPNEKMVVWDEFFS 230 I + +L+ + F G+ ++ E+ RL L E + V + F Sbjct: 181 IENFTKENSLQLNDNIFSKIFTGVSKTLSSEICFRLKNNSIDLSLSNLKEIVEVCKDLFK 240 Query: 231 AISHQPIPTFYETENKDFFTPIAYQVLSEQASAVTAYPTLSQLLDSYYHEKAEKDRAKQQ 290 I T+N F ++S++ Y + S+LL+++Y+ K + DR K + Sbjct: 241 EIQSNKFEFNCYTKNNSFVGFYCLNLMSKEDYKKIQYDSSSKLLENFYYAKDKSDRLKSK 300 Query: 291 GGELIRKIENELKRNKNKLKKREQTLKESENAENYRRNGELLTTFLTQVPRGAKEVVLPN 350 +L + + N + R K K TLK+ E+ + ++ GELLT + + +G + L N Sbjct: 301 SSDLQKIVMNNINRCTKKDKILNNTLKKCEDKDIFKLYGELLTANIYALKKGLSHIELAN 360 Query: 351 YYEED-RPIKIALDPALTPNQNAQKYFHRYQKLKNAVKLIGEQIQEAKDEIQYLESVLSQ 409 YY E+ +KI LD TP+QN Q Y+ +Y KLK + + EQ+ + ++E+ YL SVL+ Sbjct: 361 YYSENYDTVKITLDENKTPSQNVQSYYKKYNKLKKSEEAANEQLLQNEEELNYLYSVLTN 420 Query: 410 LEIAGPMD-IEAIKEELTSEGYLKKKNLKKQKRKKPSQPDQYFSSDGTLILVGKNNLQND 468 + A D IE IK+EL GY+K K + K K+ K S+P + S DG I VGKNN+QND Sbjct: 421 INNADNYDEIEEIKKELIETGYIKFKKIYKSKKSKTSKPMHFISKDGIDIYVGKNNIQND 480 Query: 469 QLTMKTAKKTDYWLHAKNIPGSHVIIKSDK-PSDETITEAAELAAYFSKYRYSAQVPVDL 527 LT+K A K D W H KNIPGSHVI+K+ + T+ EAA LAAY+SK + S+ VPVD Sbjct: 481 YLTLKFANKHDIWFHTKNIPGSHVIVKNIMDIPESTLLEAANLAAYYSKSQNSSNVPVDY 540 Query: 528 VQVKHIRKPNGAKPGYVIYENQKTIIVTPEEEKIT 562 +VK+++KPNGAKPG VIY +TI VTP + Sbjct: 541 TEVKNVKKPNGAKPGMVIYSTNQTIYVTPTNPNLK 575
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 28.2 bits (63), Expect = 0.047 Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 3/47 (6%) Query: 164 TNEIAQTVQVMSR---QVDFIYVPLDNTIANAMQTVVKEANKANIPV 207 TN++ Q R +V ++Y P I + V+K A+ V Sbjct: 454 TNDLIQYTMAADRMNERVSYLYQPYHPAILRLVDMVIKAAHSEGKWV 500
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.4 bits (68), Expect = 0.008 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 4/46 (8%) Query: 36 DFITVL-GGNGAGKSTLFNTIAGTLQLSQGSISFKDQLITKDSEEK 80 D+ VL G G GKSTL NT+ G S KDS E+ Sbjct: 596 DYSVVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTG---KDSYEQ 638
>PF04647#Accessory gene regulator B Length = 212 Score = 28.2 bits (63), Expect = 0.049 Identities = 6/34 (17%), Positives = 14/34 (41%), Gaps = 2/34 (5%) Query: 84 KNKPLKPRRKRSWKKIILSILLVLILYSGISFFI 117 + +R K+ S++L+++ G S Sbjct: 127 PRNLISNTEQRKTLKLKTSMVLMVLF--GGSIGA 158
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 409 bits (1053), Expect = e-147 Identities = 138/314 (43%), Positives = 203/314 (64%), Gaps = 5/314 (1%) Query: 3 KRKVVVALGGNAIL--STDASAKAQQEALMETAKYLVKFIEQGDELIISHGNGPQVGNLL 60 ++VV+ALGGNA+ S + + + +TA+ + + I +G E++I+HGNGPQVG+LL Sbjct: 2 GKRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLL 61 Query: 61 IQQQAADSE-KTPAMPLDTCVAMTEGSIGYWLQNAMGEVLKEKGIDKDVVSLVTQVIVDE 119 + A + PA P+D AM++G IGY +Q A+ L+++G++K VV+++TQ IVD+ Sbjct: 62 LHMDAGQATYGIPAQPMDVAGAMSQGWIGYMIQQALKNELRKRGMEKKVVTIITQTIVDK 121 Query: 120 NDPSFKNPSKPVGPFYTEEEAKEQMNADSTVTFKEDAGRGWRKVVASPKPISIKEARVIE 179 NDP+F+NP+KPVGPFY EE AK + KED+GRGWR+VV SP P EA I+ Sbjct: 122 NDPAFQNPTKPVGPFYDEETAKRLAREKGWI-VKEDSGRGWRRVVPSPDPKGHVEAETIK 180 Query: 180 TLVDQGVITVSVGGGGIPVVETATGLEGREAVIDKDFASEKLAEIIDADLLIVLTGVDNV 239 LV++GVI ++ GGGG+PV+ ++G EAVIDKD A EKLAE ++AD+ ++LT V+ Sbjct: 181 KLVERGVIVIASGGGGVPVILEDGEIKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNGA 240 Query: 240 YVNYQKPDQKKLETVTVSEMKQYIDEKQFAPGSMLPKVEAAIAFVEAKPNAKAIITSLEN 299 + Y ++ L V V E+++Y +E F GSM PKV AAI F+E +AII LE Sbjct: 241 ALYYGTEKEQWLREVKVEELRKYYEEGHFKAGSMGPKVLAAIRFIEW-GGERAIIAHLEK 299 Query: 300 IENLLASEEGTIIV 313 L + GT ++ Sbjct: 300 AVEALEGKTGTQVL 313
>ARGDEIMINASE#Bacterial arginine deiminase signature. Length = 409 Score = 525 bits (1353), Expect = 0.0 Identities = 184/410 (44%), Positives = 271/410 (66%), Gaps = 10/410 (2%) Query: 3 KPIHVFSEIGKLKTVLLKRPGQEVENLTPDIMDRLLFDDIPYLPIAQEEHDNFAKTLQNE 62 PI++FSEIG+LK VLL RPG+E+ENLTP IM LFDDIPYL +A++EH+ FA L+N Sbjct: 6 NPINIFSEIGRLKKVLLHRPGEELENLTPFIMKNFLFDDIPYLEVARQEHEVFASILKNN 65 Query: 63 GVETLYLEKLAAEAI-DAGNVKEQFLNKMLDESHIASNAVREGLHEFLLSMETQEMVDKI 121 VE Y+E L +E + + ++ +F+++ + E+ I ++ L ++ S+ M+ K+ Sbjct: 66 LVEIEYIEDLISEVLVSSVALENKFISQFILEAEIKTDFTINLLKDYFSSLTIDNMISKM 125 Query: 122 MAGVRTKDIEVRSSSLYDLSADDDYPFYMDPMPNLYFTRDPSASMGNGMTVNKMTFEARR 181 ++GV T++++ +SSL DL + F +DPMPN+ FTRDP AS+GNG+T+NKM + R+ Sbjct: 126 ISGVVTEELKNYTSSLDDL-VNGANLFIIDPMPNVLFTRDPFASIGNGVTINKMFTKVRQ 184 Query: 182 RESMFTEYILKHHPRFANKGIEVWLDRENPDHIEGGDELILSDKVVAVGISQRTNAKALE 241 RE++F EYI K+HP + + + +WL+R +EGGDEL+L+ ++ +GIS+RT AK++E Sbjct: 185 RETIFAEYIFKYHPVYK-ENVPIWLNRWEEASLEGGDELVLNKGLLVIGISERTEAKSVE 243 Query: 242 KLARHLFAKNSGFEKVLAIKIPNNRAMMHLDTVFTMVDHDKFTIHPAIQSKDGKMDVFTI 301 KLA LF + F+ +LA +IP NR+ MHLDTVFT +D+ FT + D ++ + Sbjct: 244 KLAISLFKNKTSFDTILAFQIPKNRSYMHLDTVFTQIDYSVFTSFTSD---DMYFSIYVL 300 Query: 302 EPDGDDIKITHSD---NLHETMKAALGLDDLVLIPTGNGDEIVAPREQWNDGSNTLAIAP 358 + KI + + + LG + +I GD I REQWNDG+N LAIAP Sbjct: 301 TYNPSSSKIHIKKEKARIKDVLSFYLG-RKIDIIKCAGGDLIHGAREQWNDGANVLAIAP 359 Query: 359 GVVVTYNRNYVSNELLRSYGIKVLEINSSELSRGRGGPRCMSQPLVREDL 408 G ++ Y+RN+V+N+L GIKV I SSELSRGRGGPRCMS PL+RED+ Sbjct: 360 GEIIAYSRNHVTNKLFEENGIKVHRIPSSELSRGRGGPRCMSMPLIREDI 409
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 36.1 bits (83), Expect = 2e-05 Identities = 22/86 (25%), Positives = 30/86 (34%), Gaps = 2/86 (2%) Query: 53 DNQICGFIGYSKVIDE-VEITNIAVAVSEQGKGHARHLLQLLIT-EQIKDSLHVFLEVRL 110 +N G I + I +IAVA + KG LL I + + LE + Sbjct: 73 ENNCIGRIKIRSNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQD 132 Query: 111 SNEAARKLYESEKFRILGKRKSYYRN 136 N +A Y F I Y N Sbjct: 133 INISACHFYAKHHFIIGAVDTMLYSN 158
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 36.5 bits (84), Expect = 2e-05 Identities = 17/55 (30%), Positives = 27/55 (49%) Query: 99 ITNIAVRPAYQRKRIGSLLIDEIENFAIMNRCETMSLEVRMSNQDAQRLYRKLGF 153 I +IAV Y++K +G+ L+ + +A N + LE + N A Y K F Sbjct: 92 IEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHF 146
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 180 bits (459), Expect = 1e-56 Identities = 79/344 (22%), Positives = 145/344 (42%), Gaps = 42/344 (12%) Query: 1 MTILVLGGAGYIGSHAVDQLVQKGYQVAVVDNLLTGH---------KQAVHPDAHFYEGD 51 M LV G AG+IG H +L++ G+QV +DNL + + P F++ D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 52 IRDKEFLRSVFEKEPIEGVIHFAASSLVGESVEKPLMYFNNNVYGMQILLEVMHEFNVNK 111 + D+E + +F E V V S+E P Y ++N+ G +LE + Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 112 IVFSSTAATYGEPKESPITEDTPAN-PKNPYGESKLMMEKMMKWCDQAYGMRYVALRYFN 170 ++++S+++ YG ++ P + D + P + Y +K E M YG+ LR+F Sbjct: 121 LLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFFT 180 Query: 171 VAGAKADASIGEDHTPETHLVPIILQVALGQRKALAVYGDDYDTPDGTCIRDYVQVEDLI 230 V G P+ + A+ + K++ VY G RD+ ++D+ Sbjct: 181 VYGPWGR--------PD--MALFKFTKAMLEGKSIDVYN------YGKMKRDFTYIDDIA 224 Query: 231 AAHILALEYLKEGNES---------------NFFNLGSSKGYSVKEMLEAAREVTGKEIP 275 A I + + + +N+G+S + + ++A + G E Sbjct: 225 EAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAK 284 Query: 276 AEIAPRRAGDPSRLVASSEKAREILGWKPEYTDIKAIIKTAWDW 319 + P + GD A ++ E++G+ PE T +K +K +W Sbjct: 285 KNMLPLQPGDVLETSADTKALYEVIGFTPE-TTVKDGVKNFVNW 327
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 24.2 bits (52), Expect = 0.029 Identities = 11/22 (50%), Positives = 15/22 (68%) Query: 13 LATAAAVAGLVASVKKTVIDPI 34 L+T+AA AGL+AS I P+ Sbjct: 300 LSTSAAAAGLIASAVTLAISPL 321
>PF06917#Periplasmic pectate lyase Length = 555 Score = 27.6 bits (61), Expect = 0.010 Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 6/52 (11%) Query: 35 VLHLTQPTLSRQLKELEEELGTELFVRENRKMILTEAGYFLKKPSRRNFRFN 86 ++ L + L L ++G +LF R + G F++ R FR + Sbjct: 453 LVELAEHCQCPTLFTLAWQIGDDLFKRHYHR------GLFVESAQHRYFRID 498
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 52.6 bits (126), Expect = 1e-09 Identities = 32/169 (18%), Positives = 74/169 (43%), Gaps = 1/169 (0%) Query: 21 MDIMFLAFSLSSMITSFHISGTQAGFISTITNLGMLIGGIFFGIIADKYGRVKVFSQTVL 80 ++ M L SL + F+ +++T L IG +G ++D+ G ++ ++ Sbjct: 28 LNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGII 87 Query: 81 LFSIASLLMYFASNIYLVYLF-RFIAGVGAGGEYGACMSLISESFSKKQIGRASSVAGIG 139 + S++ + + + + + RFI G GA M +++ K+ G+A + G Sbjct: 88 INCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSI 147 Query: 140 AQVGAALAAILAAVIIPTFGWKMLYVVGVLPVLMVLFIRRGLTEPKEFK 188 +G + + +I W L ++ ++ ++ V F+ + L + K Sbjct: 148 VAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKEVRIK 196
>PF05043#Transcriptional activator Length = 493 Score = 46.9 bits (111), Expect = 4e-09 Identities = 31/136 (22%), Positives = 69/136 (50%), Gaps = 5/136 (3%) Query: 1 MQTFLTKVSQKKIKMIHLLLETERWCSIEELQNELKVSSKSILNYLTDLEELFQKYPDKV 60 M+ L+K S ++++++ LL E +RW EL L + +++ + L+ ++ F PD + Sbjct: 1 MRDLLSKKSHRQLELLELLFEHKRWFHRSELAELLNCTERAVKDDLSHVKSAF---PDLI 57 Query: 61 ILKNENNRRFSMEKQENFPIYIIYLHFYRKSYNYHLIEFMYQHPEKNLEDYADAQYTSVS 120 + N R + ++ I ++Y HF++ S ++ ++EF++ + E Y S S Sbjct: 58 FHSSTNGIR--IINTDDSDIEMVYHHFFKHSTHFSILEFIFFNEGCQAESICKEFYISSS 115 Query: 121 TVFRYAKLLVKYFEMT 136 +++R + K + Sbjct: 116 SLYRIISQINKVIKRQ 131
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 37.0 bits (85), Expect = 2e-05 Identities = 20/126 (15%), Positives = 41/126 (32%), Gaps = 3/126 (2%) Query: 9 SQAEANPTKENYATASAAIQALPENKQELTSRLAAIDSTIKAKEAEEERKKQEEIARQQA 68 Q T +N A A + N Q + ++ +E E+ + + Sbjct: 1055 EQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKV 1114 Query: 69 EQAQQEAIAQQQAEQA---RQEAIAQQQAEQARQQSAAEQASQQAQAAAPEQNNEQTVYV 125 E + + + + ++ + Q Q QAE AR+ + + EQ Sbjct: 1115 ETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKE 1174 Query: 126 TPTGSK 131 T + + Sbjct: 1175 TSSNVE 1180 Score = 30.8 bits (69), Expect = 0.002 Identities = 21/102 (20%), Positives = 37/102 (36%), Gaps = 3/102 (2%) Query: 21 ATASAAIQALPENKQELTSRLAAIDSTIKAKEAEEERKKQEEIARQQAEQAQQEAIAQQQ 80 T IQA + +A +D A + E AE ++QE+ ++ Sbjct: 997 ITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTE---TVAENSKQESKTVEK 1053 Query: 81 AEQARQEAIAQQQAEQARQQSAAEQASQQAQAAAPEQNNEQT 122 EQ E AQ + +S + +Q + A ++T Sbjct: 1054 NEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKET 1095 Score = 27.7 bits (61), Expect = 0.023 Identities = 18/83 (21%), Positives = 34/83 (40%) Query: 49 KAKEAEEERKKQEEIARQQAEQAQQEAIAQQQAEQARQEAIAQQQAEQARQQSAAEQASQ 108 EE + +E A + AE ++QE+ ++ EQ ++ A+ Sbjct: 1009 SVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREV 1068 Query: 109 QAQAAAPEQNNEQTVYVTPTGSK 131 +A + + N QT V +GS+ Sbjct: 1069 AKEAKSNVKANTQTNEVAQSGSE 1091
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 43.5 bits (102), Expect = 3e-06 Identities = 29/163 (17%), Positives = 54/163 (33%), Gaps = 16/163 (9%) Query: 205 LEGDPAKQARKQAAKEERMKQRAEAKEARRLAAKEAAEKEAAEYEKKKAVSQQRENTADE 264 ++ + Q+ E + Q E KE A E EK E EK + V + + + Sbjct: 1076 VKANTQTNEVAQSGSETKETQTTETKET---ATVEKEEKAKVETEKTQEVPKVTSQVSPK 1132 Query: 265 WQEPENTEP------EQLSFVPIDSFQ-------ENIHPANLEKPVPDTPKQTNTAEGFS 311 ++ E +P E V I Q + PA + P +T Sbjct: 1133 QEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTG 1192 Query: 312 DELPEDDGTSLEFEIEAEQENQDYELPTVDLLDSIPTVDQSDE 354 + + E+ + + ++ P S+ +V + E Sbjct: 1193 NSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVE 1235 Score = 36.2 bits (83), Expect = 6e-04 Identities = 29/174 (16%), Positives = 48/174 (27%), Gaps = 22/174 (12%) Query: 210 AKQARKQAAKEERMKQRAEAKEARR---------------LAAKEAAEKEAAEYEKKKAV 254 + +Q A E + R AKEA+ KE E E + Sbjct: 1050 TVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKE 1109 Query: 255 SQQRENTADEWQEPENTEPEQLSFVPIDSFQENIHPANLEKPV-----PDTPKQTNTAEG 309 + + T + P+ T ++ Q PA P P + T Sbjct: 1110 EKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTE 1169 Query: 310 -FSDELPEDDGTSLEFEIEAEQENQDYELPTVDLLDSI-PTVDQSDEYKKIEKN 361 + E + + N E P + PTV+ K ++ Sbjct: 1170 QPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRH 1223
>adhesinb#Adhesin B signature. Length = 310 Score = 31.4 bits (71), Expect = 0.004 Identities = 11/28 (39%), Positives = 17/28 (60%) Query: 1 MKKTSFLFALIAGLLLFAGCSNKKTSAD 28 MKK FL L+ + A CS++K+S + Sbjct: 1 MKKCRFLVLLLLAFVGLAACSSQKSSTE 28
>PF05272#Virulence-associated E family protein Length = 892 Score = 31.2 bits (70), Expect = 0.003 Identities = 9/22 (40%), Positives = 14/22 (63%) Query: 30 LAIVGPSGGGKTTLLRILAGLE 51 + + G G GK+TL+ L GL+ Sbjct: 599 VVLEGTGGIGKSTLINTLVGLD 620
>TYPE3OMGPROT#Type III secretion system outer membrane G protein family signature. Length = 607 Score = 27.5 bits (61), Expect = 0.028 Identities = 9/38 (23%), Positives = 20/38 (52%), Gaps = 3/38 (7%) Query: 84 VSEEQLPDLLGVPAGT---VTPLALMHDKEKKIQVVID 118 V+ +++ +L G+ GT +TP L + +I + + Sbjct: 385 VTGKEVAELKGITYGTMLRMTPRVLTQGDKSEISLNLH 422
>BACINVASINB#Salmonella/Shigella invasin protein B signature. Length = 593 Score = 28.6 bits (63), Expect = 0.047 Identities = 12/35 (34%), Positives = 19/35 (54%) Query: 223 EALDKAGLTFHTSLDDKSATLDELLSYITKYEVTA 257 EALDKA + D A ++ + +TK++ TA Sbjct: 200 EALDKATDATVKAGTDAKAKAEKADNILTKFQGTA 234
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 32.1 bits (73), Expect = 0.008 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 1/57 (1%) Query: 160 EGKITHFAGSEDPDFSFYFILRFEYPLTIDELAVSNKNSDSIPLYFEQTKKQTIRFG 216 ++HFA +E PD + R E E S NS + L+ + +R G Sbjct: 154 MTLMSHFAEAEHPDGISGAMARIEQAAEGLECRRSLSNSAAT-LWHPEAHFDWVRPG 209
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 84.1 bits (208), Expect = 2e-19 Identities = 35/131 (26%), Positives = 58/131 (44%), Gaps = 6/131 (4%) Query: 4 VLLVDDEYMILNGLKKIIDWQSLGFQIVATAENAKEGLAVLEQRQIDLVVTDVTMPEING 63 +L+ DD+ I L + + G+ V NA + DLVVTDV MP+ N Sbjct: 6 ILVADDDAAIRTVLNQAL--SRAGYD-VRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 64 LEFIEAAQKERHNFEFMILSGYQEFDYLKGGMQLGAVNYLMKPVNKFELVESLKKIKTRL 123 + + +K R + +++S F + GA +YL KP F+L E + I L Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKP---FDLTELIGIIGRAL 119 Query: 124 DQQNEQKNQQE 134 + + ++ E Sbjct: 120 AEPKRRPSKLE 130
>PF06580#Sensor histidine kinase Length = 349 Score = 195 bits (498), Expect = 1e-59 Identities = 54/209 (25%), Positives = 103/209 (49%), Gaps = 16/209 (7%) Query: 361 DIYKLEIKQQDAHMRALQAQINPHFLYNTLEYIRMYAISEGSEELADVVYAFSALLRNN- 419 D +K+ Q+A + AL+AQINPHF++N L IR I E + +++ + S L+R + Sbjct: 150 DQWKMASMAQEAQLMALKAQINPHFMFNALNNIRA-LILEDPTKAREMLTSLSELMRYSL 208 Query: 420 -TNQEKTITLKEELDFCEKYVYLYQMRYPNRVAYHFMIDPDLEKIEVPKFVIQPLVENYF 478 + + ++L +EL + Y+ L +++ +R+ + I+P + ++VP ++Q LVEN Sbjct: 209 RYSNARQVSLADELTVVDSYLQLASIQFEDRLQFENQINPAIMDVQVPPMLVQTLVENGI 268 Query: 479 KHGIDFTRFDNALSVKVLQEGKRVRIIIKDNGKGMTEKRLKQIEEKLSHPKVELHGSIGL 538 KHGI + +K ++ V + +++ G + + GL Sbjct: 269 KHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALK-------------NTKESTGTGL 315 Query: 539 QNVNERLRASFGSSYYMSLENNETGGLTV 567 QNV ERL+ +G+ + L + + Sbjct: 316 QNVRERLQMLYGTEAQIKLSEKQGKVNAM 344
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 91.0 bits (226), Expect = 2e-22 Identities = 81/358 (22%), Positives = 139/358 (38%), Gaps = 18/358 (5%) Query: 19 KGKSSALVVAATCMIAFMGVGLVDPILKTIAAQL---NATPAETTLLFTSYMLVTGVVML 75 K +V+ +T + +G+GL+ P+L + L N A +L Y L+ Sbjct: 2 KPNRPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAP 61 Query: 76 FTGFLSSRIGLKKTLMTGLFIIVVFAGLGGLSGNIGMLIGLRAGWGVGNALFVSTALATI 135 G LS R G + L+ L V + + + +L R G+ A + A A I Sbjct: 62 VLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATG-AVAGAYI 120 Query: 136 VSILVGNTE-KAIMMYEAALGCGMAVGPLVGGVLGSGSWRYPFFGVAFLMFCGFIALAVL 194 I G+ + A G GM GP++GG++G S PFF A L F+ L Sbjct: 121 ADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFL 180 Query: 195 LPETEKPKRKVGLWEGVKALSNHKLRSV--GLIALLYNFGFFTLLAYAPFLL-------- 244 LPE+ K +R+ E + L++ + + AL+ F L+ P L Sbjct: 181 LPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDR 240 Query: 245 IGYSELEVGFVFFGWGVLLAIASIFVAPALERKFTTYRTILAAFVLFIICLLLLGAGTSM 304 + +G +G+L ++A + + + R ++ + +LL T Sbjct: 241 FHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRG 300 Query: 305 PVLVPISIVLA--GFFQGIINTLLTTIA-MEIPGLQRNVASSSYSFVRFFGGALAPFI 359 + PI ++LA G + +L+ E G + ++ S G L I Sbjct: 301 WMAFPIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAI 358
>THERMOLYSIN#Thermolysin metalloprotease (M4) family signature. Length = 544 Score = 34.2 bits (78), Expect = 0.001 Identities = 12/58 (20%), Positives = 28/58 (48%) Query: 172 VKDGEIREFSGNYSAYLTQKELEKKTQLREAESIMKEKKRLEKSIQEKKKQAEKLEKV 229 V DGE+ SG L ++ L+ + + ++ M K+ + + +++ AE+ + Sbjct: 111 VNDGELSSLSGTLIPNLDKRTLKTEAAISIQQAEMIAKQDVADRVTKERPAAEEGKPT 168
>FLGFLGJ#Flagellar protein FlgJ signature. Length = 313 Score = 77.1 bits (189), Expect = 8e-18 Identities = 64/214 (29%), Positives = 94/214 (43%), Gaps = 26/214 (12%) Query: 71 TTEQTQTEDSTSAEAQNNP-ENAEEITNQLTDGQTLTHTHQADLSEFENYTGYAFYARSS 129 T EQ E+ST A P E NQ LS+ Y S Sbjct: 99 TPEQPLPEESTPAAPMKFPLETVVRYQNQ-------------ALSQLVQKAVPRNYDDSL 145 Query: 130 ANSQQAFIDSIASTAQSLASANDLYASVMIAQAIVESGWGNSTLASA---PNYNLFGIK- 185 +AF+ ++ AQ + + + +++AQA +ESGWG + P+YNLFG+K Sbjct: 146 PGDSKAFLAQLSLPAQLASQQSGVPHHLILAQAALESGWGQRQIRRENGEPSYNLFGVKA 205 Query: 186 -GSYNGQSVTMPTSEYVNGQWITVNAAFRKYPSYKESLQDNVTVLKTTSFQPGVYYYSGA 244 G++ G + T+EY NG+ V A FR Y SY E+L D V +L V Sbjct: 206 SGNWKGPVTEITTTEYENGEAKKVKAKFRVYSSYLEALSDYVGLLTRNPRYAAV------ 259 Query: 245 WKSNTNSYKDATAWLTGRYATAPNYGSTLNNVIE 278 + ++ + A A YAT P+Y L N+I+ Sbjct: 260 -TTAASAEQGAQALQDAGYATDPHYARKLTNMIQ 292
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 96.3 bits (239), Expect = 4e-26 Identities = 55/190 (28%), Positives = 92/190 (48%), Gaps = 2/190 (1%) Query: 7 KVIVIMGASSGIGEATTKLLAEKGAKLVIAARREDRLKAIKESLPEAELYIQT--ADVRD 64 K+ I GA+ GIGEA + LA +GA + ++L+ + SL + + ADVRD Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 65 FAQVQAVIDLAMEKFGRIDVLYNNAGIMPTAPLVEGHRDEWQNMLDINIMGVLNGISAVL 124 A + + + G ID+L N AG++ + +EW+ +N GV N +V Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128 Query: 125 PIMEKQKSGHIISTDSVAGHVVYPDSAVYCGTKFAVRAIMEGLRQEQRQNNIKSTIISPG 184 M ++SG I++ S V A Y +K A + L E + NI+ I+SPG Sbjct: 129 KYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPG 188 Query: 185 AVQTELYQTI 194 + +T++ ++ Sbjct: 189 STETDMQWSL 198