PredictBias

identification of genomic and pathogenicity islands in prokaryotic genome
Home | Help | Analyzed genomes
 
A) Input parameters
Genomesequence.gbThreshold dinucleotide bias2
Threshold codon bias4Threshold %GC bias3
E-value (RPSBlast)0.05Genome (non-pathogenic)
 
B) Compare a potential GI or PAI in related non-pathogenic sp. (phylogenetic tree)
Potential GI or PAI start    end  
Select Organism     
 
C) Potential GIs and PAIs in NC_021994 (download)
S.NoStartEndBiasVirulenceInsertion elementsPrediction
1EFAU085_RS01205EFAU085_RS01275Y        NNGenomic Island
LocusTagDNBiasCDNBias%GCBiasProduct
EFAU085_RS01205012-3.042156putative copper chaperone
EFAU085_RS01210112-2.908965DNA-binding protein
EFAU085_RS01215011-2.427658hypothetical protein
EFAU085_RS01220113-4.116209phosphoglycerol transferase
EFAU085_RS01225116-5.260521hypothetical protein
EFAU085_RS01230217-5.549994serine/threonine transporter SstT
EFAU085_RS01235218-6.116772membrane protein
EFAU085_RS01240118-5.669541tRNA pseudouridine synthase A
EFAU085_RS01245118-5.587894integral membrane protein
EFAU085_RS01250116-3.781027membrane protein
EFAU085_RS01255113-2.327768membrane protein
EFAU085_RS01260112-0.654539peptide methionine sulfoxide reductase
EFAU085_RS01265112-0.214058L-glyceraldehyde 3-phosphate reductase
EFAU085_RS012702110.100025GntR family transcriptional regulator
EFAU085_RS012752100.137574PTS lactose transporter subunit IIC
2EFAU085_RS02440EFAU085_RS02660Y        Y        YPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
EFAU085_RS024400183.146132ABC transporter permease
EFAU085_RS024451223.456687methionine ABC transporter substrate-binding
EFAU085_RS024500182.125422iron ABC transporter ATP-binding protein
EFAU085_RS02455-1171.152408Fe-S cluster assembly protein SufD
EFAU085_RS02460-1170.281286cysteine desulfurase
EFAU085_RS02465217-3.185860Fe-S assembly protein NifU
EFAU085_RS02470318-3.757475Fe-S cluster assembly protein SufB
EFAU085_RS02475625-6.163938integrase
EFAU085_RS02480726-6.002061transcriptional regulator
EFAU085_RS02485728-5.810016excisionase
EFAU085_RS02490423-2.813154hypothetical protein
EFAU085_RS02495421-0.021541DNA-binding protein
EFAU085_RS02500423-0.190926DNA-binding protein
EFAU085_RS02505423-0.357066hypothetical protein
EFAU085_RS02510119-0.354562hypothetical protein
EFAU085_RS02515116-0.626944PTS sugar transporter subunit IIBC
EFAU085_RS02520-116-1.3708946-phospho-beta-glucosidase
EFAU085_RS02525-115-1.454495transcription antitermination protein BlgG
EFAU085_RS02530012-2.650403hypothetical protein
EFAU085_RS02535013-2.670842restriction endonuclease subunit M
EFAU085_RS02540013-3.011852type I restriction endonuclease subunit S
EFAU085_RS02545-112-2.887621type I restriction modification site-specific
EFAU085_RS02555-113-3.855514transcriptional regulator
EFAU085_RS02560-114-3.895022hypothetical protein
EFAU085_RS02565014-0.755248bacteriocin ABC transporter ATP-binding protein
EFAU085_RS02570217-0.056943hypothetical protein
EFAU085_RS025751200.750182peptidyl-prolyl cis-trans isomerase
EFAU085_RS02580221-0.414429hypothetical protein
EFAU085_RS02585219-0.354255hypothetical protein
EFAU085_RS02590320-0.538151cell division protein FtsK
EFAU085_RS02595220-0.340947hypothetical protein
EFAU085_RS02600119-0.442917replication initiation protein
EFAU085_RS02605120-0.553157RNA-directed DNA polymerase
EFAU085_RS026102231.370416antirestriction protein ArdA
EFAU085_RS026153231.662570membrane protein
EFAU085_RS026203231.409325ATP/GTP-binding protein
EFAU085_RS026253231.175034group II intron reverse transcriptase/maturase
EFAU085_RS026305241.474791ATP/GTP-binding protein
EFAU085_RS026354231.196934membrane protein
EFAU085_RS02640324-0.167175peptidase P60
EFAU085_RS02645325-1.830654hypothetical protein
EFAU085_RS02655123-2.323019helix-turn-helix protein
EFAU085_RS02660321-1.960058DNA-binding protein
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS02445ADHESNFAMILY310.005 Adhesin family signature.
		>ADHESNFAMILY#Adhesin family signature.

Length = 309

Score = 31.0 bits (70), Expect = 0.005
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 5/53 (9%)

Query: 3 KKIFGFAAALLLTVGLAACGNNSDSKDSANKADDTTLKVGASPTPHAEILEHV 55
KK+ L + L AC + S K LKV A+ + A+I +++
Sbjct: 2 KKLGTLLVLFLSAIILVACASGKKDTTSGQK-----LKVVATNSIIADITKNI 49


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS02485DNABINDNGFIS260.012 DNA-binding protein FIS signature.
		>DNABINDNGFIS#DNA-binding protein FIS signature.

Length = 98

Score = 26.1 bits (57), Expect = 0.012
Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 7/45 (15%)

Query: 24 VLKPMLEDIISGVTLEYMDYQQ--ASEYLGVSVGTIRKYVSQYGL 66
V +P+L+ + ++Y Q A+ +G++ GT+RK + +YG+
Sbjct: 58 VEQPLLDMV-----MQYTRGNQTRAALMMGINRGTLRKKLKKYGM 97


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS02515RTXTOXIND300.033 Gram-negative bacterial RTX secretion protein D signat...
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

signature.
Length = 478

Score = 29.8 bits (67), Expect = 0.033
Identities = 7/20 (35%), Positives = 11/20 (55%)

Query: 545 EVFVKAGDQVSAGQLLINAD 564
E+ VK G+ V G +L+
Sbjct: 109 EIIVKEGESVRKGDVLLKLT 128


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS02575VACJLIPOPROT280.043 VacJ lipoprotein signature.
		>VACJLIPOPROT#VacJ lipoprotein signature.

Length = 251

Score = 27.9 bits (62), Expect = 0.043
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 2/28 (7%)

Query: 1 MKKRFLALAIVLGTGLLSGCTNAGEKTA 28
MK R ALA LGT LL GC ++G
Sbjct: 1 MKLRLSALA--LGTTLLVGCASSGTDQQ 26


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS02635IGASERPTASE397e-05 IgA-specific serine endopeptidase (S6) signature.
		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.

Length = 1541

Score = 39.3 bits (91), Expect = 7e-05
Identities = 34/197 (17%), Positives = 72/197 (36%), Gaps = 18/197 (9%)

Query: 526 DTKDRMVDTASGLKEQVKDLPTNARYA-VYQGKSKVKENVRDLTSSISQTKADRASG--R 582
D + KE ++ N + V Q S+ KE T + + + +
Sbjct: 1057 DATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVET 1116

Query: 583 KEQQEQRRKT--IAKRRSEMEQVKQKKQPASSVHERPTTRQEQYHDEQTSKQSNIQTSYK 640
++ QE + T ++ ++ + E V+ + +PA PT ++ QT+ ++
Sbjct: 1117 EKTQEVPKVTSQVSPKQEQSETVQPQAEPARE--NDPTVNIKEP-QSQTNTTAD------ 1167

Query: 641 ESQQAKQERPAVKSDFSSPKVERQGNTVQEKTVQKPATSTTTADRTSQRPITKERPSTVQ 700
Q AK+ V+ + GN+V E P +T + + + +P
Sbjct: 1168 TEQPAKETSSNVEQPVTESTTVNTGNSVVE----NPENTTPATTQPTVNSESSNKPKNRH 1223

Query: 701 RVPLQNTRSRPPIKTAT 717
R +++ T +
Sbjct: 1224 RRSVRSVPHNVEPATTS 1240


3EFAU085_RS03345EFAU085_RS03940Y        Y        YPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
EFAU085_RS033452263.634925lipoate-protein ligase A
EFAU085_RS033503355.498718membrane protein
EFAU085_RS0335535911.911039signal peptidase
EFAU085_RS0336036614.170749hypothetical protein
EFAU085_RS0336515810.835385transposase
EFAU085_RS0337036010.423659hypothetical protein
EFAU085_RS0337526110.148194hypothetical protein
EFAU085_RS033801589.299465hypothetical protein
EFAU085_RS033850548.321187TraG/TraD family protein
EFAU085_RS033900455.723308maturase
EFAU085_RS033950374.204952conjugal transfer protein TraG
EFAU085_RS034002330.831726Maff2 family protein
EFAU085_RS034053350.477442hypothetical protein
EFAU085_RS034103350.343557hypothetical protein
EFAU085_RS034152340.239504hypothetical protein
EFAU085_RS03420233-0.095259Na+/Pi-cotransporter
EFAU085_RS03425432-1.866929hypothetical protein
EFAU085_RS03430331-2.244843hypothetical protein
EFAU085_RS03435430-2.789274hypothetical protein
EFAU085_RS03440431-0.577767Cro/Cl family transcriptional regulator
EFAU085_RS03445430-0.858048acetyltransferase
EFAU085_RS034503310.003873acetyltransferase
EFAU085_RS034553341.128675hypothetical protein
EFAU085_RS034603372.085851hypothetical protein
EFAU085_RS034653383.355380hypothetical protein
EFAU085_RS034706394.711710hypothetical protein
EFAU085_RS034755404.739230hypothetical protein
EFAU085_RS034806435.932797hypothetical protein
EFAU085_RS034854427.064977hypothetical protein
EFAU085_RS034903437.677522hypothetical protein
EFAU085_RS034954458.861500hypothetical protein
EFAU085_RS0350036612.238621hypothetical protein
EFAU085_RS0350537114.442638Site-specific recombinases, DNA invertase Pin
EFAU085_RS0351047916.299424membrane protein
EFAU085_RS0351558217.388545hypothetical protein
EFAU085_RS0352058417.838777hypothetical protein
EFAU085_RS0352548318.426002conjugal transfer protein TraE
EFAU085_RS0353048218.953529hypothetical protein
EFAU085_RS0353548218.727339hypothetical protein
EFAU085_RS0354048218.700221hypothetical protein
EFAU085_RS0354547917.734616DNA topoisomerase III
EFAU085_RS0355047717.296712hypothetical protein
EFAU085_RS0355547314.719684hypothetical protein
EFAU085_RS0356046913.512789hypothetical protein
EFAU085_RS0356556513.458257helix-turn-helix protein
EFAU085_RS0357045912.327005endonuclease
EFAU085_RS035754449.443576mobilization protein
EFAU085_RS035804418.740762DNA-binding protein
EFAU085_RS035854397.978329transposase
EFAU085_RS035905418.506648hypothetical protein
EFAU085_RS035954418.647721chemotaxis protein CheY
EFAU085_RS036005418.724934sensor histidine kinase VanSB
EFAU085_RS036055356.219822peptidase M15
EFAU085_RS036107314.383214vancomycin B-type resistance protein VanW
EFAU085_RS036156304.837265alpha-keto acid dehydrogenase
EFAU085_RS036205293.788398D-alanine--D-alanine ligase
EFAU085_RS036254271.317564peptidase M15
EFAU085_RS036303353.047881integrase
EFAU085_RS036352426.213545transposase
EFAU085_RS03640-1397.469578hypothetical protein
EFAU085_RS03645-1314.980028hypothetical protein
EFAU085_RS036500193.257588excisionase
EFAU085_RS03655-1163.274059integrase
EFAU085_RS036601130.903128signal peptidase
EFAU085_RS036650130.975451O-methyltransferase
EFAU085_RS036752171.059752*membrane protein
EFAU085_RS036802170.896845sulfate permease
EFAU085_RS03685025-1.431673uracil-DNA glycosylase
EFAU085_RS03690229-3.39740050S ribosomal protein L21
EFAU085_RS03695026-4.285592Protein of unknown function DUF464
EFAU085_RS03700126-4.46010450S ribosomal protein L27
EFAU085_RS03710028-5.205398hypothetical protein
EFAU085_RS03715127-4.702574hypothetical protein
EFAU085_RS03720330-4.002180Cro/Cl family transcriptional regulator
EFAU085_RS03725227-3.600442hypothetical protein
EFAU085_RS03730225-2.335238BRO
EFAU085_RS03735223-1.473208hypothetical protein
EFAU085_RS03740120-2.028610hypothetical protein
EFAU085_RS03745118-1.885944hypothetical protein
EFAU085_RS03750017-1.820891hypothetical protein
EFAU085_RS03755016-2.424741phage protein
EFAU085_RS03760014-3.805494hypothetical protein
EFAU085_RS03765015-4.233096replication protein
EFAU085_RS03770-115-3.930451DNA replication protein DnaC
EFAU085_RS03775015-4.379017hypothetical protein
EFAU085_RS03780116-4.665323transposase
EFAU085_RS03785118-3.533685transposase
EFAU085_RS03790526-2.419415antitoxin
EFAU085_RS03795423-3.029584hypothetical protein
EFAU085_RS03800421-4.056906hypothetical protein
EFAU085_RS03805022-6.167726hypothetical protein
EFAU085_RS03810326-6.283622ArpU family transcriptional regulator
EFAU085_RS03815529-7.050417hypothetical protein
EFAU085_RS03820727-6.917625hypothetical protein
EFAU085_RS03825528-6.831442prophage Lp2 protein 14
EFAU085_RS03830324-5.560057hypothetical protein
EFAU085_RS03835322-3.646519hypothetical protein
EFAU085_RS03840321-3.000357HNH endonuclease
EFAU085_RS03845118-3.274028hypothetical protein
EFAU085_RS03850219-3.025169terminase
EFAU085_RS03860218-3.288722portal protein
EFAU085_RS03865219-3.560175ATP-dependent Clp protease proteolytic subunit
EFAU085_RS03870120-3.787419major capsid protein
EFAU085_RS03875218-4.343986prophage pi2 protein 34
EFAU085_RS03880121-4.796455hypothetical protein
EFAU085_RS03885-219-2.850942putative phage head-tail adaptor
EFAU085_RS03890-118-2.714947hypothetical protein
EFAU085_RS03895120-2.566060hypothetical protein
EFAU085_RS03900219-2.384992hypothetical protein
EFAU085_RS03905320-2.339398hypothetical protein
EFAU085_RS03910319-2.039567tail protein
EFAU085_RS03915320-2.222196phage tail protein
EFAU085_RS03920318-1.462758hypothetical protein
EFAU085_RS03925217-1.357118hypothetical protein
EFAU085_RS03930116-1.401199hypothetical protein
EFAU085_RS03940217-3.588325holin
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS03445SACTRNSFRASE532e-11 Streptothricin acetyltransferase signature.
		>SACTRNSFRASE#Streptothricin acetyltransferase signature.

Length = 173

Score = 53.0 bits (127), Expect = 2e-11
Identities = 25/100 (25%), Positives = 38/100 (38%), Gaps = 15/100 (15%)

Query: 50 AGALFVYEENGTIVGSIIIDKVQPIEYATIPWKEKLSEDEVMVIHLLMVRPSMSGKGIAS 109
A F+Y +G I I W +++ V KG+ +
Sbjct: 64 GKAAFLYYLENNCIGRIKIRS---------NWNGYALIEDIAV------AKDYRKKGVGT 108

Query: 110 SLIKFATELAQKNSCRALRLDTGSQNIPALSLYQKNGFEI 149
+L+ A E A++N L L+T NI A Y K+ F I
Sbjct: 109 ALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFII 148


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS03450SACTRNSFRASE362e-05 Streptothricin acetyltransferase signature.
		>SACTRNSFRASE#Streptothricin acetyltransferase signature.

Length = 173

Score = 35.7 bits (82), Expect = 2e-05
Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 12/91 (13%)

Query: 49 VYVYEDKQEIQGFIGLS---NEY--IEGIFVSAEMQSQGIGKILLNY-VKGKRNK----L 98
++Y + G I + N Y IE I V+ + + +G+G LL+ ++ + L
Sbjct: 67 AFLYYLENNCIGRIKIRSNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGL 126

Query: 99 ILNVYQKNTRAISFYQREGFEIQYSGLDEAT 129
+L N A FY + F I +D
Sbjct: 127 MLETQDINISACHFYAKHHFII--GAVDTML 155


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS03490GPOSANCHOR300.026 Gram-positive coccus surface protein anchor signature.
		>GPOSANCHOR#Gram-positive coccus surface protein anchor signature.

Length = 539

Score = 30.0 bits (67), Expect = 0.026
Identities = 33/236 (13%), Positives = 73/236 (30%), Gaps = 14/236 (5%)

Query: 318 YAEMKQRGKNLSNLQEFAKSISYLQTHQIETMDDLQERIEELNGVVSVSKKEISEKRKQL 377
+ + LSN +E + + + + +L+ R +L + + + ++
Sbjct: 84 KDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKI 143

Query: 378 KELENLEKMAEVIKTNQPLIDEYNHFYFQKRRERYYQQHKKEINYYRKCERELKQHLDKN 437
K LE EK A + F + + E + EL++ L+
Sbjct: 144 KTLEA-EKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGA 202

Query: 438 GKVPTARWKREKEELQAGIEELKADNQPYQEELTFVKKVQSCADIARRDREMAEADTSGR 497
TA + + L+A L A ++ L + + EA+ +
Sbjct: 203 MNFSTAD-SAKIKTLEAEKAALAARKADLEKALEGAMNF---STADSAKIKTLEAEKAAL 258

Query: 498 SEEKREKQVKFPTFYTVQAKEILEENGKAEQQPLNQSEQNPEKKTSLLRKLDEKKK 553
+ E + +A E A+ + E + L+ + +
Sbjct: 259 EARQAELE---------KALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQ 305


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS03545YERSSTKINASE300.040 Yersinia serine/threonine protein kinase signature.
		>YERSSTKINASE#Yersinia serine/threonine protein kinase signature.

Length = 732

Score = 30.1 bits (67), Expect = 0.040
Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 6/112 (5%)

Query: 173 NATRLFSVLYHKNLTVGRVQTPTLKMLVDRDAKITDFKKEKYHIVHITAGGADAV----- 227
+A S+L +++ + V +L+ D + F E+Y +H A A
Sbjct: 617 SAKAQLSILINRSGSWADVARQSLQRF-DSTRPVVKFGTEQYTAIHRQMMAAHAAITLQE 675

Query: 228 SSRFSDAAEANTVKAACAKAQAVCVSVTREKKTEQPPKLYDLTTLQREANRL 279
S F+D TV + Q S+ E EQ KL +LTT+ NRL
Sbjct: 676 VSEFTDDMRNFTVDSIPLLIQLGRSSLMDEHLVEQREKLRELTTIAERLNRL 727


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS03595HTHFIS942e-24 FIS bacterial regulatory protein HTH signature.
		>HTHFIS#FIS bacterial regulatory protein HTH signature.

Length = 484

Score = 93.7 bits (233), Expect = 2e-24
Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 1/130 (0%)

Query: 3 IRILLVEDDDHICNTVRAFLAEAGYQVDACTDGNEAYTKFYENTYQLVILDIMLPGMNGH 62
IL+ +DD I + L+ AGY V ++ + LV+ D+++P N
Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63

Query: 63 ELLREFRAKN-DTPILMMTALSDDENQIRAFDAEADDYVTKPFKMQILLKRVEALLRRSG 121
+LL + D P+L+M+A + I+A + A DY+ KPF + L+ + L
Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123

Query: 122 ALAKEIRVGR 131
++
Sbjct: 124 RRPSKLEDDS 133


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS03600MICOLLPTASE300.030 Microbial collagenase metalloprotease (M9) signature.
		>MICOLLPTASE#Microbial collagenase metalloprotease (M9) signature.

Length = 1104

Score = 29.7 bits (66), Expect = 0.030
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 4/52 (7%)

Query: 49 YQPLVELIQNSDRLDIQEVAGLFHYNNQSFEFYI-EDKEGSVLYATPNANTS 99
Y LVELI+ + V LF++N+ S+ F+ D+ +++Y ++ +
Sbjct: 103 YSDLVELIKTIS---YENVPDLFNFNDGSYTFFSNRDRVQAIIYGLEDSGRT 151


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS03910GPOSANCHOR689e-14 Gram-positive coccus surface protein anchor signature.
		>GPOSANCHOR#Gram-positive coccus surface protein anchor signature.

Length = 539

Score = 68.2 bits (166), Expect = 9e-14
Identities = 43/232 (18%), Positives = 81/232 (34%), Gaps = 14/232 (6%)

Query: 3 KKRTEAEVTFIANDDGLKSTLKEISAELTKNRAELKLEQAQLQQTGSESDKLGSKLSSLE 62
+ T A L + ++ L + A+++ +E L ++ + LE
Sbjct: 207 TADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELE 266

Query: 63 KQYELQSQKVEVTSQRLANAKKYYGENSTEVQKLERELINQQTAQQRLSNEIDKTSNALA 122
K E S ++ + E LE + +Q L ++D + A
Sbjct: 267 KALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKK 326

Query: 123 QAKGEIQTYESTMQQLDSEQKNVQASASLIESEYKKWQATAGQSASESEKLAKAQEYVSQ 182
Q + E Q E EQ + + AS + + E+E K +E
Sbjct: 327 QLEAEHQKLE--------EQNKI-SEASRQSLRRDLDASREAKKQLEAE-HQKLEE--QN 374

Query: 183 QSENAEKTIDILRRQLEATQSEFGATSTEAMQMEAKLNDAEREFEELGQAAK 234
+ A + LRR L+A++ + +KL E+ +EL ++ K
Sbjct: 375 KISEASRQ--SLRRDLDASREAKKQVEKALEEANSKLAALEKLNKELEESKK 424



Score = 66.6 bits (162), Expect = 3e-13
Identities = 43/315 (13%), Positives = 105/315 (33%), Gaps = 20/315 (6%)

Query: 33 NRAELKLEQAQLQQTGSESDKLGSKLSSLEKQYELQSQKVEVTSQRLANAKKYYGENSTE 92
A QT +K+ + E + K S K + E + E
Sbjct: 35 VNTNEVSAVATRSQT-DTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEE 93

Query: 93 VQKLERELINQQTAQQRLSNEIDKTSN-------ALAQAKGEIQTYESTMQQLDSEQKNV 145
+ + +L + +++I + AL A + ++ L++E+ +
Sbjct: 94 LSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAAL 153

Query: 146 QASASLIESEYKKWQATAGQSASESEKLAKAQEYVSQQSENAEKTIDILRRQLEATQSEF 205
A + +E + + +++ + L + + + EK ++ A ++
Sbjct: 154 AARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAK- 212

Query: 206 GATSTEAMQMEAKLNDAEREFEELGQAAKNVDTTNLDDIGSKIDMNNLMEASDVLSDIGD 265
+A L + + E+ + A N T + I + +EA
Sbjct: 213 ---IKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQ------A 263

Query: 266 KLTELGKQAVDSANSVGSSQSKIQANFGLTKQEAEEL--TNVARDIYYKGFGESLDQSTD 323
+L + + A++ + + + ++A + E +L + + + LD S +
Sbjct: 264 ELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASRE 323

Query: 324 ALILVKRNLGDLNNQ 338
A ++ L Q
Sbjct: 324 AKKQLEAEHQKLEEQ 338



Score = 62.4 bits (151), Expect = 6e-12
Identities = 36/211 (17%), Positives = 77/211 (36%)

Query: 19 LKSTLKEISAELTKNRAELKLEQAQLQQTGSESDKLGSKLSSLEKQYELQSQKVEVTSQR 78
+ +K + AE A + L+ + S +K+ +LE + + +
Sbjct: 139 DSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKA 198

Query: 79 LANAKKYYGENSTEVQKLERELINQQTAQQRLSNEIDKTSNALAQAKGEIQTYESTMQQL 138
L A + +S +++ LE E + L ++ N +I+T E+ L
Sbjct: 199 LEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAAL 258

Query: 139 DSEQKNVQASASLIESEYKKWQATAGQSASESEKLAKAQEYVSQQSENAEKTIDILRRQL 198
++ Q ++ + + A +E L + + QS+ LRR L
Sbjct: 259 EARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDL 318

Query: 199 EATQSEFGATSTEAMQMEAKLNDAEREFEEL 229
+A++ E ++E + +E + L
Sbjct: 319 DASREAKKQLEAEHQKLEEQNKISEASRQSL 349



Score = 60.1 bits (145), Expect = 3e-11
Identities = 33/219 (15%), Positives = 79/219 (36%), Gaps = 6/219 (2%)

Query: 13 IANDDGLKSTLKEISAELTKNRAELKLEQAQLQQTGSESDKLGSKLSSLEKQYELQSQKV 72
++N + +E EL+ +A L++ + + S+ K E + +
Sbjct: 94 LSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAAL 153

Query: 73 EVTSQRLANAKKYY----GENSTEVQKLERELINQQTAQQRLSNEIDKTSNALAQAKGEI 128
L A + +S +++ LE E + Q L ++ N +I
Sbjct: 154 AARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKI 213

Query: 129 QTYESTMQQLDSEQKNVQASASLIESEYKKWQATAGQSASESEKLAKAQEYVSQQSENAE 188
+T E+ L + + +++ + + A +E L Q + + E A
Sbjct: 214 KTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAM 273

Query: 189 KTIDILRRQLEATQSEFGATSTEAMQM--EAKLNDAERE 225
+++ ++E A E + ++++ +A R+
Sbjct: 274 NFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQ 312



Score = 52.0 bits (124), Expect = 1e-08
Identities = 33/182 (18%), Positives = 80/182 (43%)

Query: 19 LKSTLKEISAELTKNRAELKLEQAQLQQTGSESDKLGSKLSSLEKQYELQSQKVEVTSQR 78
L++ E+ L + A+++ +E L ++ + LE Q ++ + + +
Sbjct: 258 LEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRD 317

Query: 79 LANAKKYYGENSTEVQKLERELINQQTAQQRLSNEIDKTSNALAQAKGEIQTYESTMQQL 138
L +++ + E QKLE + + ++Q L ++D + A Q + E Q E +
Sbjct: 318 LDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKIS 377

Query: 139 DSEQKNVQASASLIESEYKKWQATAGQSASESEKLAKAQEYVSQQSENAEKTIDILRRQL 198
++ +++++ K+ + ++ S+ L K + + + + EK L+ +L
Sbjct: 378 EASRQSLRRDLDASREAKKQVEKALEEANSKLAALEKLNKELEESKKLTEKEKAELQAKL 437

Query: 199 EA 200
EA
Sbjct: 438 EA 439


4EFAU085_RS04200EFAU085_RS04380Y        Y        YPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
EFAU085_RS042002190.196178PTS cellobiose transporter subunit IIB
EFAU085_RS04205119-0.020184PTS mannose transporter subunit IIA
EFAU085_RS04210119-2.600016PTS cellobiose transporter subunit IIC
EFAU085_RS04215219-6.710743hypothetical protein
EFAU085_RS04220221-7.271550hypothetical protein
EFAU085_RS04225322-7.839315hypothetical protein
EFAU085_RS04235325-8.476417hypothetical protein
EFAU085_RS04245324-8.137952*integrase
EFAU085_RS04250223-7.097835hypothetical protein
EFAU085_RS04255323-7.275198hypothetical protein
EFAU085_RS04260423-6.949678hypothetical protein
EFAU085_RS04265221-4.859615hypothetical protein
EFAU085_RS04270425-4.780020DNA-binding protein
EFAU085_RS04275124-4.647562phage anti-repressor protein
EFAU085_RS04280326-4.667168XRE family transcriptional regulator
EFAU085_RS04285326-4.031434hypothetical protein
EFAU085_RS04290022-3.041383hypothetical protein
EFAU085_RS04295020-3.321216hypothetical protein
EFAU085_RS04300121-2.743034antirepressor
EFAU085_RS04305122-1.988869hypothetical protein
EFAU085_RS04310022-1.571502hypothetical protein
EFAU085_RS04315019-1.249315hypothetical protein
EFAU085_RS04320123-1.242623hypothetical protein
EFAU085_RS04325326-0.828721hypothetical protein
EFAU085_RS04330325-1.928690hypothetical protein
EFAU085_RS04335125-2.975162ArpR
EFAU085_RS04340-128-3.890695hypothetical protein
EFAU085_RS04345-122-3.950219hypothetical protein
EFAU085_RS04350220-5.114855hypothetical protein
EFAU085_RS04355123-6.945050hypothetical protein
EFAU085_RS04360123-5.742806hypothetical protein
EFAU085_RS04365221-5.052750RNA-binding protein
EFAU085_RS04370321-4.753241hypothetical protein
EFAU085_RS04375323-4.735423phage protein
EFAU085_RS04380-122-3.901962hypothetical protein
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS04220PF06917260.010 Periplasmic pectate lyase
		>PF06917#Periplasmic pectate lyase

Length = 555

Score = 25.6 bits (56), Expect = 0.010
Identities = 7/22 (31%), Positives = 12/22 (54%)

Query: 39 TGLGIYFFMKGKKREEAKEKNN 60
TGL +Y F ++R+ +N
Sbjct: 260 TGLPVYQFSSPQQRQPIPADDN 281


5EFAU085_RS04615EFAU085_RS04700Y        Y        YPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
EFAU085_RS04615-110-3.436794glycosyl transferase family 2
EFAU085_RS04620-215-5.934452beta-lactamase
EFAU085_RS04625-218-7.063629transposase, IS116/IS110/IS902 family
EFAU085_RS04630-120-8.236852UDP-phosphate galactose phosphotransferase
EFAU085_RS04635326-9.824911glycosyl transferase family 2
EFAU085_RS04640530-10.219025glycosyl transferase family 1
EFAU085_RS04645431-10.078022glycosyl transferase
EFAU085_RS04650631-9.084667polymerase
EFAU085_RS04660729-7.752358hypothetical protein
EFAU085_RS04665731-8.295495polysaccharide biosynthesis protein
EFAU085_RS04675528-6.377218hypothetical protein
EFAU085_RS04680426-6.359019UDP-N-acetylglucosamine 2-epimerase
EFAU085_RS04685220-4.966767transferase
EFAU085_RS04690016-4.498536pyridoxal phosphate-dependent aminotransferase
EFAU085_RS04700-113-4.017594oxidoreductase
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS04685TYPE4SSCAGA280.031 Type IV secretion system CagA exotoxin signature.
		>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature.

Length = 1147

Score = 28.1 bits (62), Expect = 0.031
Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 41 GFFDDKQNKMQDLKYLGKINELNSWADSKKKI 72
GFF + + + LK K N +N W +S KK+
Sbjct: 981 GFFGNLEQTIDKLKDSTKHNPMNLWVESAKKV 1012


6EFAU085_RS05960EFAU085_RS06010Y        Y        YPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
EFAU085_RS05960212-0.914253ABC transporter permease
EFAU085_RS05965213-1.744689nitrate ABC transporter substrate-binding
EFAU085_RS05970117-1.890476ABC transporter ATP-binding protein
EFAU085_RS05975420-3.660323Mg-dependent DNase TatD
EFAU085_RS05980523-5.471279hypothetical protein
EFAU085_RS05995726-6.617257hypothetical protein
EFAU085_RS06000525-6.698478hypothetical protein
EFAU085_RS06005018-3.799458IS256 family transposase
EFAU085_RS06010-215-3.780810transposase
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS05970PF05272290.023 Virulence-associated E family protein
		>PF05272#Virulence-associated E family protein

Length = 892

Score = 28.9 bits (64), Expect = 0.023
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 5/46 (10%)

Query: 28 DTFTSIVAPSGAGKSTLLKTLTGVQ-----PMTSGTIKVDDQKVTG 68
D + G GKSTL+ TL G+ GT K +++ G
Sbjct: 596 DYSVVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTGKDSYEQIAG 641


7EFAU085_RS06445EFAU085_RS06480Y        Y        YPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
EFAU085_RS06445221-0.977246GCN5 family acetyltransferase
EFAU085_RS06455120-1.207234*peptidase M23B
EFAU085_RS06460-319-3.586546universal stress protein A
EFAU085_RS06465220-6.405471hypothetical protein
EFAU085_RS06470222-6.928284hypothetical protein
EFAU085_RS06475119-5.814036glucose uptake protein
EFAU085_RS06480018-3.104163hypothetical protein
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS06455PF03544270.041 Gram-negative bacterial tonB protein
		>PF03544#Gram-negative bacterial tonB protein

Length = 243

Score = 27.2 bits (60), Expect = 0.041
Identities = 19/79 (24%), Positives = 24/79 (30%), Gaps = 1/79 (1%)

Query: 82 AQAAAEPQAAVQEAPVQAEQPVVQETVQTETQA-APVAETQPAPAVTETAATPASTSSAK 140
A A EP AVQ P +P + E APV +P P K
Sbjct: 56 APADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPK 115

Query: 141 EWIAQKESSGSYTATNGRY 159
+ ES + N
Sbjct: 116 RDVKPVESRPASPFENTAP 134


8EFAU085_RS07455EFAU085_RS07520Y        Y        NPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
EFAU085_RS07455222-4.373738hypothetical protein
EFAU085_RS07460319-4.059346Cro/Cl family transcriptional regulator
EFAU085_RS07465419-2.958155transcriptional regulator
EFAU085_RS07470517-1.641334hypothetical protein
EFAU085_RS07475415-1.605737riboflavin biosynthesis protein RibD C-domain
EFAU085_RS07480416-1.251806phage head-tail adapter protein
EFAU085_RS074902180.174396hypothetical protein
EFAU085_RS07495218-0.570657ammonium transporter
EFAU085_RS07500023-3.519380membrane protein
EFAU085_RS07505021-4.098077stress response regulator Gls24
EFAU085_RS07510014-4.448746hypothetical protein
EFAU085_RS07515-115-3.704025GapA
EFAU085_RS07520019-3.315298hypothetical protein
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS07505ACRIFLAVINRP290.010 Acriflavin resistance protein family signature.
		>ACRIFLAVINRP#Acriflavin resistance protein family signature.

Length = 1034

Score = 29.4 bits (66), Expect = 0.010
Identities = 23/144 (15%), Positives = 52/144 (36%), Gaps = 18/144 (12%)

Query: 58 SNMAEKLVNTDNVTAGINTEVGKKQVAVDLDV--IVEYGKDIEDIYNQIK----ELISTE 111
SN+ + L + V + + + + LD + +Y D+ NQ+K ++ + +
Sbjct: 160 SNVKDTLSRLNGV-GDVQLFGAQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQ 218

Query: 112 VNNMTHLDVIEVNVNVA---DIKTQEEYQK-----DQETVQDKVTEAAK---STGQFASR 160
+ L ++N ++ K EE+ K + + ++ + A+ +
Sbjct: 219 LGGTPALPGQQLNASIIAQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVI 278

Query: 161 QTDKAKSAVGKGAQKVKENNEPRV 184
K A G G + N
Sbjct: 279 ARINGKPAAGLGIKLATGANALDT 302


9EFAU085_RS07565EFAU085_RS07610Y        NYGenomic Island
LocusTagDNBiasCDNBias%GCBiasProduct
EFAU085_RS07565214-2.736856magnesium transporter
EFAU085_RS07570115-3.105439hypothetical protein
EFAU085_RS07575015-3.119496universal stress protein A
EFAU085_RS07580316-3.289029glycosyl transferase family 8
EFAU085_RS07585218-2.790682haloacid dehalogenase
EFAU085_RS07590121-3.500910isochorismatase
EFAU085_RS07600022-3.215631*hypothetical protein
EFAU085_RS07605223-2.856955hypothetical protein
EFAU085_RS07610219-1.458359transcriptional regulator
10EFAU085_RS07730EFAU085_RS08030Y        Y        YPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
EFAU085_RS07730022-3.498997amidase
EFAU085_RS07735120-3.335736transcriptional regulator
EFAU085_RS07745021-3.409849hypothetical protein
EFAU085_RS07750020-2.586724peptidase
EFAU085_RS07755-115-2.639051abortive infection protein
EFAU085_RS07760-116-2.477860rotamase
EFAU085_RS07765-116-1.162188transaldolase
EFAU085_RS07770-116-2.603838PTS sorbitol transporter subunit IIA
EFAU085_RS07775-115-2.108055transposase, IS116/IS110/IS902 family
EFAU085_RS07780216-2.328636PTS sorbitol transporter subunit IIB
EFAU085_RS07785116-2.864154PTS sorbitol transporter subunit IIC
EFAU085_RS07790114-3.467838DeoR family transcriptional regulator
EFAU085_RS07795215-3.991844transcription antiterminator BglG
EFAU085_RS07800116-2.093494sorbitol-6-phosphate 2-dehydrogenase
EFAU085_RS07805120-2.598780membrane protein
EFAU085_RS07810221-2.891972hypothetical protein
EFAU085_RS07815321-3.552728heat shock protein Hsp20
EFAU085_RS07820323-3.794161hypothetical protein
EFAU085_RS07830324-4.521790transposase
EFAU085_RS07835629-6.182546integrase
EFAU085_RS07845834-7.644711hypothetical protein
EFAU085_RS07850734-6.956996hypothetical protein
EFAU085_RS07855531-6.148175sigma-70 family RNA polymerase sigma factor
EFAU085_RS07865530-5.766723hypothetical protein
EFAU085_RS07870327-5.322687hypothetical protein
EFAU085_RS07875327-5.111725transporter, major facilitator family protein
EFAU085_RS07880226-5.068673ketohydroxyglutarate aldolase
EFAU085_RS07885226-5.349409hypothetical protein
EFAU085_RS07890327-6.106928mannonate dehydratase, UxuA_2
EFAU085_RS07895429-6.510629mannitol dehydrogenase protein
EFAU085_RS07905635-8.160221hypothetical protein
EFAU085_RS07910427-3.081872hypothetical protein
EFAU085_RS07915322-1.479383hypothetical protein
EFAU085_RS07920422-1.297242hypothetical protein
EFAU085_RS07925423-1.127723hypothetical protein
EFAU085_RS07930524-0.942305hypothetical protein
EFAU085_RS07935323-1.146819mannosyl-glycoprotein
EFAU085_RS07945325-2.593206ATPase
EFAU085_RS07950025-2.770042hypothetical protein
EFAU085_RS07955-124-2.112291hypothetical protein
EFAU085_RS07965024-2.218416cell wall surface anchor family protein
EFAU085_RS07975024-3.542935hypothetical protein
EFAU085_RS07980125-3.408022hypothetical protein
EFAU085_RS07985126-3.156568hypothetical protein
EFAU085_RS07990323-2.328516helix-turn-helix protein
EFAU085_RS07995424-1.787356hypothetical protein
EFAU085_RS08000425-1.455527FtsK/SpoIIIE family protein
EFAU085_RS08010524-0.630045hypothetical protein
EFAU085_RS08015723-0.326989hypothetical protein
EFAU085_RS08020520-1.736567hypothetical protein
EFAU085_RS08025116-0.882017adhesin
EFAU085_RS08030214-1.058385hypothetical protein
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS07795PF08280373e-04 M protein trans-acting positive regulator
		>PF08280#M protein trans-acting positive regulator

Length = 530

Score = 36.7 bits (85), Expect = 3e-04
Identities = 24/159 (15%), Positives = 60/159 (37%), Gaps = 13/159 (8%)

Query: 9 QLLKLLVTHKKVSIQEVQKEIKTSNQTIKKDIGELNEEIAGIAKIIQKNKHFELEIYDFD 68
QL+ L + I EV ++ + + ELN + + + +
Sbjct: 48 QLVVLFFKTSSLPITEVAEKTGLTFLQLNHYCEELNAFFPDSLSMTIQKR-----MISCQ 102

Query: 69 FFDEIMQGKLKTASDFNSASKRIAYLLNRLIETEDFLRMDDLSEEVGVSRGTVVKDLKTL 128
F + L ++ + +A+L+ + D + +S + + + L
Sbjct: 103 FTHPSKETYLYQLYASSNVLQLLAFLIKNGSHSRPLT---DFARSHFLSNSSAYRMREAL 159

Query: 129 KEMINDFDVKITGTPNKGLRIIGDELELRLLLFYFVSPY 167
++ +F++K++ +I+G+E +R L+ S +
Sbjct: 160 IPLLRNFELKLSKN-----KIVGEEYRIRYLIALLYSKF 193


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS07800DHBDHDRGNASE1068e-30 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig...
		>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase

signature.
Length = 261

Score = 106 bits (266), Expect = 8e-30
Identities = 73/272 (26%), Positives = 120/272 (44%), Gaps = 29/272 (10%)

Query: 7 IAGKVVIVTGGSSGIGRSIVENLLKQNAQVANFDVT----ECRIQHENLLS-----LKVD 57
I GK+ +TG + GIG ++ L Q A +A D E + + D
Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65

Query: 58 VSSKTDIEEGIYKVMKHFKTIDGLVNNAGINIPSLLIDRNHPKSKYELSEQVFDKMIAVN 117
V I+E ++ + ID LVN AG+ P + LS++ ++ +VN
Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVL---------RPGLIHSLSDEEWEATFSVN 116

Query: 118 QKSVYLMSQAVGRILVQKGSGVIVNLSSESGLEGSEGQSCYAATKAAMNSFTRSWAKELG 177
V+ S++V + ++ + SG IV + S + YA++KAA FT+ EL
Sbjct: 117 STGVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELA 176

Query: 178 KRNVRVVGVAPGILE---ETGLRTQEYEEALSYTRGISVEQLRNGYSRTSTIPLGRSGKL 234
+ N+R V+PG E + L E +G S+E + G IPL + K
Sbjct: 177 EYNIRCNIVSPGSTETDMQWSLWADENGAE-QVIKG-SLETFKTG------IPLKKLAKP 228

Query: 235 QEVADLVCYYLSERSSYITGVTTNISGGKTRG 266
++AD V + +S ++ +IT + GG T G
Sbjct: 229 SDIADAVLFLVSGQAGHITMHNLCVDGGATLG 260


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS07875TCRTETB310.007 Tetracycline resistance protein TetB signature.
		>TCRTETB#Tetracycline resistance protein TetB signature.

Length = 458

Score = 31.4 bits (71), Expect = 0.007
Identities = 40/212 (18%), Positives = 79/212 (37%), Gaps = 8/212 (3%)

Query: 233 GLVKNRALLSIIGAAIFLLLAQLLIMSMNNYVFPDYYNDAQGIVLMNFINPILV-LIVVS 291
GL KN + + + +SM Y+ D + + + I P + +I+
Sbjct: 251 GLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFG 310

Query: 292 PLTLFLSKKYGKKELASVGMFFSAIVYLILFLIKTSNMYVFLILSSVGYMGLGVFNTVIW 351
+ L + G + ++G+ F ++ +L + + + I+ GL TVI
Sbjct: 311 YIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFTKTVIS 370

Query: 352 ANITDVIDDQEVKSDQREDGTVYAVYSFARKIGQALAGGVGGWTLSIIGYDSLANVQTGD 411
++ + QE G ++ +F + + + G LSI D D
Sbjct: 371 TIVSSSLKQQEA-------GAGMSLLNFTSFLSEGTGIAIVGGLLSIPLLDQRLLPMEVD 423

Query: 412 VLEKLYNASTLIPSICFLIVGLILFFLYPLSK 443
LY+ L+ S +I L+ +Y S+
Sbjct: 424 QSTYLYSNLLLLFSGIIVISWLVTLNVYKHSQ 455


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS07965IGASERPTASE346e-04 IgA-specific serine endopeptidase (S6) signature.
		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.

Length = 1541

Score = 34.3 bits (78), Expect = 6e-04
Identities = 33/169 (19%), Positives = 69/169 (40%), Gaps = 5/169 (2%)

Query: 30 ETVETPKSEIVDTLPGEELPDVETELSGGASETPEQSQPEQPEKELIESEPEFPESTLPT 89
+ +T +++ T+ EE VETE + + Q P+Q + E ++ + E PT
Sbjct: 1093 KETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPT 1152

Query: 90 DPIEEEGVHGSTTTDSSTVTTPEQSGTTSSSEKTTDSSSTEQPTMSSTSEESKEEPSQPA 149
I+E + ++T T + + TSS+ + + ST T +S E +
Sbjct: 1153 VNIKE-----PQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATT 1207

Query: 150 EKASEKSEAIPKENKPVVPAKEVTVSVTPSGEITTNTSQGTSVPIVTSN 198
+ + +N+ + V +V P+ + + S + ++N
Sbjct: 1208 QPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTN 1256



Score = 32.7 bits (74), Expect = 0.002
Identities = 38/202 (18%), Positives = 58/202 (28%), Gaps = 34/202 (16%)

Query: 37 SEIVDTLPGEELPDVETELSGGASETPEQSQPEQPEKELIESEPEFPESTLPTDPIEEEG 96
E P P TE E S+ E E E + E+T + +E
Sbjct: 1021 DEAPVPPPAPATPSETTET------VAENSKQESKTVEKNEQDAT--ETTAQNREVAKEA 1072

Query: 97 VHGSTTTDSSTVTTPEQSGTTSSSEKT--TDSSSTEQPTMSSTSEESKEEPSQPAEKASE 154
S+ + + S +T T ++ T++ E++K E + E
Sbjct: 1073 -------KSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKV 1125

Query: 155 KSEAIPK---------------ENKPVVPAKEVTV--SVTPSGEITTNTSQGTSVPIVTS 197
S+ PK EN P V KE + T E + VT
Sbjct: 1126 TSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTE 1185

Query: 198 NVEELTHIPTPTTPLKVESGQT 219
+ T P T
Sbjct: 1186 STTVNTGNSVVENPENTTPATT 1207



Score = 30.8 bits (69), Expect = 0.008
Identities = 26/140 (18%), Positives = 50/140 (35%), Gaps = 7/140 (5%)

Query: 60 SETPEQSQPEQPEKELIESEPEFPESTLPTDPIEEEGVHGSTTTDSSTVTTPEQSGTTSS 119
TP Q + P E + P S TT++ + ++S T
Sbjct: 997 ITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPAT---PSETTETVAENSKQESKTVEK 1053

Query: 120 SEKTTDSSSTEQPTMSSTSEESKEEPSQPAEKASEKSEAIPKENKPVVPAKEVTVSVTPS 179
+E+ ++ + ++ ++ + + +Q E A SE + + T +V
Sbjct: 1054 NEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTT----ETKETATVEKE 1109

Query: 180 GEITTNTSQGTSVPIVTSNV 199
+ T + VP VTS V
Sbjct: 1110 EKAKVETEKTQEVPKVTSQV 1129


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS08025IGASERPTASE451e-06 IgA-specific serine endopeptidase (S6) signature.
		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.

Length = 1541

Score = 45.1 bits (106), Expect = 1e-06
Identities = 36/201 (17%), Positives = 71/201 (35%), Gaps = 10/201 (4%)

Query: 21 TAQAHAEETTATQPTVEAIAQVASEVTEVQP--AEAGVPAGEATVEQAPVTE--APTVNS 76
T + AE + TVE Q A+E T A+ +A + V + + T +
Sbjct: 1036 TTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKET 1095

Query: 77 KTTLDQTIGETQHPGNSPVTSQPVEETASIT--TPASETSTPEGEKAAEATPSVKPESSE 134
+TT + + + V ++ +E +T + + + AE P +
Sbjct: 1096 QTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNI 1155

Query: 135 KQAEEKQRIEETVEQPAATADKEGKNEENVEKTISSTAASQNQPTKPNKESTASIEDQKK 194
K+ + + EQPA + T+++ + P + A+ +
Sbjct: 1156 KEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNS---VVENPENTTPATTQPTVN 1212

Query: 195 KE-QDIPKTGTPTLLVTVPTN 214
E + PK + +VP N
Sbjct: 1213 SESSNKPKNRHRRSVRSVPHN 1233



Score = 44.7 bits (105), Expect = 1e-06
Identities = 41/188 (21%), Positives = 66/188 (35%), Gaps = 12/188 (6%)

Query: 24 AHAEETTATQPTVEAIAQVASEVTEVQPAEAGVPAGEATVEQAPVTEAPTVNSKTTLDQT 83
+ Q V ++ E+ V A PA E TE NSK
Sbjct: 995 TNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSET---TETVAENSKQESKTV 1051

Query: 84 IGETQHPGNSPVTSQPVEETASITTPASETSTPE----GEKAAEATPSVKPESSEKQAEE 139
Q + ++ V + A A T T E G + E + E++ + EE
Sbjct: 1052 EKNEQDATETTAQNREVAKEAKSNVKA-NTQTNEVAQSGSETKETQTTETKETATVEKEE 1110

Query: 140 KQRIE--ETVEQPAATADKEGKNEENVEKTISSTAASQNQPTKPNKESTASIEDQKKKEQ 197
K ++E +T E P T+ K E++ + A +N PT KE + + +
Sbjct: 1111 KAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQS--QTNTTADT 1168

Query: 198 DIPKTGTP 205
+ P T
Sbjct: 1169 EQPAKETS 1176



Score = 44.7 bits (105), Expect = 1e-06
Identities = 34/157 (21%), Positives = 55/157 (35%), Gaps = 8/157 (5%)

Query: 23 QAHAEETTATQPTVEAIAQVASEVTEVQP-AEAGVPAGEATVEQAPVTEAPTVNSKTTLD 81
E+ + + +V S+V+ Q +E P E E P +
Sbjct: 1106 VEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNI---KEPQSQT 1162

Query: 82 QTIGETQHPG--NSPVTSQPVEETASITTPASETSTPEGEKAAEATPSVKPESSEKQAEE 139
T +T+ P S QPV E+ ++ T S PE A P+V ESS K
Sbjct: 1163 NTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNR 1222

Query: 140 KQRIEETV--EQPAATADKEGKNEENVEKTISSTAAS 174
+R +V AT ++ + S+ +
Sbjct: 1223 HRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTNA 1259



Score = 31.2 bits (70), Expect = 0.022
Identities = 22/122 (18%), Positives = 45/122 (36%), Gaps = 10/122 (8%)

Query: 92 NSPVTSQPVEETASITTPASETSTPEGEKA-------AEATPSVKPESSEKQAEEKQRIE 144
N V + + +I + E A P+ E++E AE ++
Sbjct: 989 NQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQES 1048

Query: 145 ETVEQPAATA-DKEGKNEENVEKTISSTAA--SQNQPTKPNKESTASIEDQKKKEQDIPK 201
+TVE+ A + +N E ++ S+ A N+ + E+ + + K+ + K
Sbjct: 1049 KTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEK 1108

Query: 202 TG 203

Sbjct: 1109 EE 1110


11EFAU085_RS08475EFAU085_RS08535Y        Y        YPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
EFAU085_RS08475219-3.407132integrase
EFAU085_RS08480423-3.519709thioredoxin
EFAU085_RS08485928-5.266899hypothetical protein
EFAU085_RS08490728-5.886292hypothetical protein
EFAU085_RS08495731-6.732287hypothetical protein
EFAU085_RS08500021-4.902600hypothetical protein
EFAU085_RS08505016-2.517699hypothetical protein
EFAU085_RS08515012-1.532524hypothetical protein
EFAU085_RS08520010-0.239630hypothetical protein
EFAU085_RS08525011-0.396390hypothetical protein
EFAU085_RS085301110.695367sporulation regulator WhiA
EFAU085_RS085352110.986519Conserved hypothetical protein CofD related
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS08530RTXTOXINA300.012 Gram-negative bacterial RTX toxin determinant A family...
		>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family

signature.
Length = 1024

Score = 30.3 bits (68), Expect = 0.012
Identities = 13/49 (26%), Positives = 28/49 (57%), Gaps = 2/49 (4%)

Query: 219 VNRLVNCETANLNKTIDAASKQIENI-ELIEAKVGLHALPEKLQEIAEL 266
+N+LV+ A+LN +++ S+Q+ + ++ L+ + KLQ + L
Sbjct: 188 INQLVD-TVASLNNNVNSFSQQLNTLGSVLSNTKHLNGVGNKLQNLPNL 235


12EFAU085_RS09180EFAU085_RS09285Y        Y        YPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
EFAU085_RS09180216-1.542629cell wall anchor
EFAU085_RS09185117-1.805540peptidase
EFAU085_RS09190024-3.902529transcriptional regulator
EFAU085_RS09195021-2.439253integrase
EFAU085_RS09200122-1.960341hypothetical protein
EFAU085_RS09205122-1.743152hypothetical protein
EFAU085_RS09210019-1.203738hypothetical protein
EFAU085_RS09215118-1.125917hypothetical protein
EFAU085_RS09220117-1.668473transposase
EFAU085_RS09225221-3.611107transposase
EFAU085_RS09230023-4.331728hypothetical protein
EFAU085_RS09235023-4.359097transposase
EFAU085_RS09240226-6.834545transposase
EFAU085_RS09245225-6.361062lactoylglutathione lyase
EFAU085_RS09250226-6.305914beta-fructofuranosidase
EFAU085_RS09260325-5.997910PTS sugar transporter subunit IIC
EFAU085_RS09265323-5.471294PTS trehalose transporter subunit IIBC
EFAU085_RS09275323-5.463873RNA polymerase subunit sigma-54
EFAU085_RS09280218-2.703526fructokinase
EFAU085_RS09285219-2.512936sugar permease
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS09275HTHFIS1273e-33 FIS bacterial regulatory protein HTH signature.
		>HTHFIS#FIS bacterial regulatory protein HTH signature.

Length = 484

Score = 127 bits (321), Expect = 3e-33
Identities = 64/225 (28%), Positives = 105/225 (46%), Gaps = 20/225 (8%)

Query: 101 LPLIIKGNSGVGKSFLASLIYQYALDRKVIHNDAKFVVVNCADYANNPELLSAVLFGYKK 160
L L+I G SG GK +A ++ Y R+ + FV +N A A +L+ + LFG++K
Sbjct: 161 LTLMITGESGTGKELVARALHDYG-KRR----NGPFVAINMA--AIPRDLIESELFGHEK 213

Query: 161 GAFTGAEKDTAGMLSSANGGYLFLDEVHNLSAENQEKLFLLMDSQKYRKLGESVQWEYAN 220
GAFTGA+ + G A GG LFLDE+ ++ + Q +L ++ +Y +G ++
Sbjct: 214 GAFTGAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGR-TPIRSD 272

Query: 221 VRLILATTEDKNTSLLA-TFR-----RRIPAEITLPDYNNRSTSEKIQLLFEFLKDEAIT 274
VR++ AT +D S+ FR R + LP +R +E I L +A
Sbjct: 273 VRIVAATNKDLKQSINQGLFREDLYYRLNVVPLRLPPLRDR--AEDIPDLVRHFVQQAEK 330

Query: 275 IDSKIFC-SIELFTDLLSKTFEGNVGELRNEIK---LLCAEGYLG 315
+ E + + + GNV EL N ++ L + +
Sbjct: 331 EGLDVKRFDQEALELMKAHPWPGNVRELENLVRRLTALYPQDVIT 375


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS09285RTXTOXIND310.003 Gram-negative bacterial RTX secretion protein D signat...
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

signature.
Length = 478

Score = 30.6 bits (69), Expect = 0.003
Identities = 8/19 (42%), Positives = 15/19 (78%)

Query: 94 DIKVQEGQKVKAGDILMTI 112
+I V+EG+ V+ GD+L+ +
Sbjct: 109 EIIVKEGESVRKGDVLLKL 127


13EFAU085_RS09335EFAU085_RS09430Y        Y        NPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
EFAU085_RS09335221-0.619580ATP-binding protein
EFAU085_RS09340221-1.752912hypothetical protein
EFAU085_RS09345120-1.238338lipoprotein
EFAU085_RS09350120-1.614311hypothetical protein
EFAU085_RS09370021-1.779847predicted protein
EFAU085_RS09375121-0.685852membrane protein
EFAU085_RS09385120-0.529904phosphoesterase
EFAU085_RS093902221.526323antirestriction protein ArdA
EFAU085_RS093953211.571757conjugal transfer protein
EFAU085_RS094003221.873724Cro/Cl family transcriptional regulator
EFAU085_RS094102191.538547DNA methyltransferase
EFAU085_RS09415221-0.106189cell division protein FtsK
EFAU085_RS094203200.124758hypothetical protein
EFAU085_RS094252180.242952protein of unknown function DUF961
EFAU085_RS094302160.024887hypothetical protein
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS09350IGASERPTASE320.013 IgA-specific serine endopeptidase (S6) signature.
		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.

Length = 1541

Score = 31.6 bits (71), Expect = 0.013
Identities = 41/213 (19%), Positives = 70/213 (32%), Gaps = 25/213 (11%)

Query: 501 ELNSDLKKQEQPVGTKKESRINLVGRKVGKVLDTKEIVKDKAKQAKNQVTDAPTNLKYSL 560
E ++ KQE K E +T ++ AK+AK+ V + +
Sbjct: 1038 ETVAENSKQESKTVEKNEQDAT----------ETTAQNREVAKEAKSNVKANTQTNEVA- 1086

Query: 561 HKGMEKTKKVPEDFKRGPFEEKANRG--ELREKQRQ-RRDAKMDEKRKVLNEAWNRHEKG 617
G E + + K EK + E + Q + +++ K++ + E
Sbjct: 1087 QSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPA 1146

Query: 618 RENVPIKKEIKPQKNELPENRSLKPRVQVHSNPE-------IKRKLSSQEVIP----NGS 666
REN P +PQ + +P + SN E +S P +
Sbjct: 1147 RENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPAT 1206

Query: 667 TQPLSKNNSFQQVKQRFTFPKRTNQQVQRKKNT 699
TQP + S + K R R+ T
Sbjct: 1207 TQPTVNSESSNKPKNRHRRSVRSVPHNVEPATT 1239


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS09370TYPE4SSCAGX310.017 Type IV secretion system CagX conjugation protein si...
		>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein

signature.
Length = 522

Score = 30.5 bits (68), Expect = 0.017
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 7/71 (9%)

Query: 33 LSPEQKFQVHDNFRQLIAQNREGKIHALQ-------IATESSIRATQERSKKEITGRLKE 85
+S Q + N +LI Q RE ++ ++ A ++++ +E +KK+ +++
Sbjct: 187 MSNPQNLSNNKNLSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQAEEAVRQ 246

Query: 86 VAKQRIDIQTD 96
AK +I I+TD
Sbjct: 247 RAKDKISIKTD 257


14EFAU085_RS09480EFAU085_RS09570Y        Y        YPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
EFAU085_RS094802131.014664dihydrofolate reductase
EFAU085_RS094851141.496632DNA-3-methyladenine glycosylase I
EFAU085_RS09490-2111.006648signal recognition particle protein
EFAU085_RS09495-2110.786902transcriptional regulator
EFAU085_RS09500-2100.796682hypothetical protein
EFAU085_RS09505-290.375285response regulator
EFAU085_RS09510-210-0.414617sensor histidine kinase
EFAU085_RS09515-114-2.499157ATPase P
EFAU085_RS09520321-4.815060phosphate ABC transporter ATP-binding protein
EFAU085_RS09525429-8.432569hypothetical protein
EFAU085_RS09530329-7.760234hypothetical protein
EFAU085_RS09535128-7.991448hypothetical protein
EFAU085_RS09540020-5.949495choloylglycine hydrolase
EFAU085_RS09545016-3.590223hypothetical protein
EFAU085_RS09550015-2.011159hypothetical protein
EFAU085_RS09565013-0.201478N-acetylmuramoyl-L-alanine amidase
EFAU085_RS09570213-0.512993transposase
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS09505HTHFIS972e-25 FIS bacterial regulatory protein HTH signature.
		>HTHFIS#FIS bacterial regulatory protein HTH signature.

Length = 484

Score = 96.8 bits (241), Expect = 2e-25
Identities = 36/139 (25%), Positives = 68/139 (48%), Gaps = 3/139 (2%)

Query: 3 KILVVDDEPSIVTLLTFNLEKEGYKVTSATDGGEGLELALEQSFDFIILDVMLPTMDGME 62
ILV DD+ +I T+L L + GY V ++ D ++ DV++P + +
Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64

Query: 63 ITQRLRQEKNETPILMLTAKDDQVDRIIGLEIGADDYLTKPFSPREVLARMKAI--FRRI 120
+ R+++ + + P+L+++A++ + I E GA DYL KPF E++ + +
Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124

Query: 121 EPRKQSKDEAEPEYLSIGQ 139
P K D + L +G+
Sbjct: 125 RPSKLEDDSQDGMPL-VGR 142


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS09510PF06580358e-04 Sensor histidine kinase
		>PF06580#Sensor histidine kinase

Length = 349

Score = 34.8 bits (80), Expect = 8e-04
Identities = 19/109 (17%), Positives = 42/109 (38%), Gaps = 23/109 (21%)

Query: 472 ILYPIIKNLIENAVQYSKSDSEIIIRYQATDD-LSFSVQDFGIGIDIEDQERIFERFYRV 530
++ +++N I++ + +I+++ + ++ V++ G +E
Sbjct: 259 LVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKE--------- 309

Query: 531 DKARSRHSGGTGLGLAIVKDYVQLLNG---TITVDSHLGTGSTFTVTIP 576
TG GL V++ +Q+L G I + G V IP
Sbjct: 310 ---------STGTGLQNVRERLQMLYGTEAQIKLSEKQGKV-NAMVLIP 348


15EFAU085_RS09725EFAU085_RS09950Y        Y        YPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
EFAU085_RS09725-1193.49392223S rRNA methyltransferase
EFAU085_RS097301265.076328acylphosphatase
EFAU085_RS097350254.711157cytochrome oxidase biogenesis protein OxaA
EFAU085_RS097402375.858671Integrase
EFAU085_RS0975025810.593604hypothetical protein
EFAU085_RS0975515310.099336hypothetical protein
EFAU085_RS097600436.777675nucleoside recognition protein
EFAU085_RS097652466.539043hypothetical protein
EFAU085_RS097701426.678999hypothetical protein
EFAU085_RS097753446.390054hypothetical protein
EFAU085_RS097805496.629252hypothetical protein
EFAU085_RS097853476.818684AraC family transcriptional regulator
EFAU085_RS097903548.076292phosphoglucomutase
EFAU085_RS097950416.369914mannose-6-phosphate isomerase
EFAU085_RS098000426.004167mannose-1-phosphate guanylyltransferase
EFAU085_RS09805-1375.434457GDP-L-fucose synthase
EFAU085_RS09810-2293.738923hypothetical protein
EFAU085_RS09815-1251.162364GDP-mannose 4,6-dehydratase
EFAU085_RS09825220-3.472603Transposase IS66 family
EFAU085_RS09830523-5.048750transposase
EFAU085_RS09835624-5.158203hypothetical protein
EFAU085_RS09840525-5.752367dTDP-4-dehydrorhamnose 3,5-epimerase
EFAU085_RS09845425-5.712471antibiotic resistance protein VanZ
EFAU085_RS09850425-5.486135flippase
EFAU085_RS09855424-5.230918hypothetical protein
EFAU085_RS09860425-5.316467hypothetical protein
EFAU085_RS09865424-4.921057capsular polysaccharide biosynthesis protein
EFAU085_RS09870624-4.438389D,D-heptose 1,7-bisphosphate phosphatase
EFAU085_RS09875624-4.502160hypothetical protein
EFAU085_RS09880624-4.602691hypothetical protein
EFAU085_RS09885524-3.232093glycosyl transferase
EFAU085_RS09890525-0.848605hypothetical protein
EFAU085_RS09895529-0.401854serine O-acetyltransferase
EFAU085_RS099003310.408218hypothetical protein
EFAU085_RS099054341.392269glycosyl transferase group 1 family protein
EFAU085_RS099103361.998924glycosyl transferase
EFAU085_RS099152331.994625epimerase
EFAU085_RS099202241.719923phosphoheptose isomerase
EFAU085_RS099252181.443857kinase
EFAU085_RS099302151.282307UDP-glucose dehydrogenase
EFAU085_RS099402160.356550multidrug MFS transporter
EFAU085_RS099452151.284725tyrosine protein phosphatase
EFAU085_RS099502171.483485tyrosine protein kinase
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS0973560KDINNERMP1303e-36 60kDa inner membrane protein signature.
		>60KDINNERMP#60kDa inner membrane protein signature.

Length = 548

Score = 130 bits (329), Expect = 3e-36
Identities = 53/227 (23%), Positives = 113/227 (49%), Gaps = 20/227 (8%)

Query: 42 LVHPMGQAITYLVENFNWSYGWAVIAMTVIVRIIILPLGISQSKKTMIQSEKMQALKPQV 101
+ P+ + + ++ +F ++G+++I +T IVR I+ PL +K KM+ L+P++
Sbjct: 336 ISQPLFKLLKWI-HSFVGNWGFSIIIITFIVRGIMYPL----TKAQYTSMAKMRMLQPKI 390

Query: 102 EAAQQKLKAATTREEQMAAQAEMQQVYRENGLSMTGGIGCLPLLIQMPIFSALYFTARYT 161
+A +++L +++ EM +Y+ ++ GG C PLLIQMPIF ALY+ +
Sbjct: 391 QAMRERLG-----DDKQRISQEMMALYKAEKVNPLGG--CFPLLIQMPIFLALYYMLMGS 443

Query: 162 EGIRESSFYG----IDLGSPSMVLVAIAGVAYLLQGYISTIGIPEEQKKTMRTMLIVSPA 217
+R++ F + P +L + GV +S + + ++ + T + P
Sbjct: 444 VELRQAPFALWIHDLSAQDPYYILPILMGVTMFFIQKMSPTTVTDPMQQKIMTFM---PV 500

Query: 218 MIVFMSISAPAGVTLYWVVGGVFSCLQTFITN-VIMKPRLKAQVAEE 263
+ + P+G+ LY++V + + +Q + + K L ++ ++
Sbjct: 501 IFTVFFLWFPSGLVLYYIVSNLVTIIQQQLIYRGLEKRGLHSREKKK 547


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS09775BCTERIALGSPF280.018 Bacterial general secretion pathway protein F signa...
		>BCTERIALGSPF#Bacterial general secretion pathway protein F

signature.
Length = 408

Score = 28.3 bits (63), Expect = 0.018
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 6/50 (12%)

Query: 74 PLQTANGIP-EALSNLWFRQEISIAEIEDAVLDAKNGKELANSLNRIKLF 122
PL A I + +SN + R + A + G L +L + LF
Sbjct: 289 PLLQAMRISGDVMSNDYARH-----RLSLATDAVREGVSLHKALEQTALF 333


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS09805NUCEPIMERASE662e-14 Nucleotide sugar epimerase signature.
		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

Length = 334

Score = 66.0 bits (161), Expect = 2e-14
Identities = 60/340 (17%), Positives = 114/340 (33%), Gaps = 66/340 (19%)

Query: 7 KIYVAGHRGMAGSAIVRELNRQ-----------DYNNIITRTHK------------ELDL 43
K V G G G + + L DY ++ + + ++DL
Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61

Query: 44 CRQDAVEAFFAQEKPDYVF-LAA-AKVGGIIANQNALADFMYENMILEMNVINSAWKNGC 101
++ + FA + VF V + N +A AD N+ +N++ N
Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYAD---SNLTGFLNILEGCRHNKI 118

Query: 102 KKLQFLGSSCIYPRMAPQPMPESCLLTSELEKTNEA---YALAKISGLKYCEFLNKQYGT 158
+ L + SS +Y + MP S + + YA K + + YG
Sbjct: 119 QHLLYASSSSVYG--LNRKMP-----FSTDDSVDHPVSLYAATKKANELMAHTYSHLYGL 171

Query: 159 DYISVMPTNLYGPNDNYHPTHSHVLPALIRRFHEAKEAGLPTVTCWGDGSPLREFLYVDD 218
+ +YGP P L + E K ++ + G R+F Y+DD
Sbjct: 172 PATGLRFFTVYGPWGR--P--DMALFKFTKAMLEGK-----SIDVYNYGKMKRDFTYIDD 222

Query: 219 LANLCVFLMNN------------------YSGDETVNAGTGKELSIKELTEMVAKVIGYE 260
+A + L + + N G + + + + + +G E
Sbjct: 223 IAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIE 282

Query: 261 GEILWDTSKPNGTPRKLLDVSKATK-LGWTYKTELEDGIR 299
+ +P D + +G+T +T ++DG++
Sbjct: 283 AKKNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVK 322


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS09815NUCEPIMERASE902e-22 Nucleotide sugar epimerase signature.
		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

Length = 334

Score = 89.8 bits (223), Expect = 2e-22
Identities = 45/173 (26%), Positives = 75/173 (43%), Gaps = 9/173 (5%)

Query: 3 KALITGITGQDGSYLADFLLEKGYEVHGITRRASISNT----ARIDHL-MGKITLHDGDL 57
K L+TG G G +++ LLE G++V GI + AR++ L H DL
Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61

Query: 58 SDSSSLIRIISIVQPDEIYNLAAQSHVQVSFDVPEYSGDVDALGVMRILEACRILGLTKK 117
+D + + + + ++ + V+ S + P D + G + ILE CR +
Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKI--- 118

Query: 118 TKIYQASTSELYGKVEEVPQRETTPF-HPYSPYAVAKQYGFWITKEYREAYGM 169
+ AS+S +YG ++P HP S YA K+ + Y YG+
Sbjct: 119 QHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGL 171


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS09915NUCEPIMERASE1231e-34 Nucleotide sugar epimerase signature.
		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

Length = 334

Score = 123 bits (310), Expect = 1e-34
Identities = 68/343 (19%), Positives = 119/343 (34%), Gaps = 38/343 (11%)

Query: 4 TIMVTGGCGMIGSNLVKRLVKEGCWDVYVADNLWRGKLEYLNDEDGHPVIDLDTHFFNAD 63
+VTG G IG ++ KRL++ G V DNL L + F D
Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAG-HQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60

Query: 64 LTDYEQAKKVIGTTE--YVVHLADVVAGIDYVFKNQGELFRINNLINSNVFDCCRKAGKE 121
L D E + + V + Y +N N N+ + CR
Sbjct: 61 LADREGMTDLFASGHFERVFISP-HRLAVRYSLENPHAYADSNLTGFLNILEGCRHNK-- 117

Query: 122 KIKGVIYVGTVCSFPLTRQNTLNPEPLREEELFPALPESAYGWSKLMGQLEMGYLEKETG 181
I+ ++Y + + L R+ P ++ P S Y +K +L G
Sbjct: 118 -IQHLLYASSSSVYGLNRKM-----PFSTDDS-VDHPVSLYAATKKANELMAHTYSHLYG 170

Query: 182 IPCCILMLHNVYGTPTDFGERSQVIPALIRKAINNPEEPFNVWGSGEQGRAFIHVNDIVN 241
+P L VYG +G + + + + +V+ G+ R F +++DI
Sbjct: 171 LPATGLRFFTVYGP---WGRPDMALFKFTKAMLEG--KSIDVYNYGKMKRDFTYIDDIAE 225

Query: 242 ALVLALD------KGWGHGH------------IQIGPSHCTSIKEIAYKIIEISGKDIKP 283
A++ D W IG S + + + + G + K
Sbjct: 226 AIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKK 285

Query: 284 FFDTSKPEGD-KARCADYSKAKEILDWKPTVSLEEGLRESYNW 325
+P GD AD E++ + P ++++G++ NW
Sbjct: 286 NMLPLQP-GDVLETSADTKALYEVIGFTPETTVKDGVKNFVNW 327


16EFAU085_RS10765EFAU085_RS10830Y        Y        YPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
EFAU085_RS10765112-3.047372*membrane protein
EFAU085_RS10770011-3.004159membrane protein
EFAU085_RS10775-112-3.130675ABC transporter
EFAU085_RS10780-213-2.416418ABC transporter, ATP-binding protein
EFAU085_RS10785010-1.124302response regulator receiver
EFAU085_RS10790-110-0.709773phosphate ABC transporter substrate-binding
EFAU085_RS10795-111-1.193301membrane protein
EFAU085_RS10800014-1.396531thioredoxin
EFAU085_RS10805115-1.732996redox-sensing transcriptional repressor Rex
EFAU085_RS10810215-2.180130multidrug ABC transporter ATP-binding protein
EFAU085_RS10815520-3.426122glucuronyl hydrolase
EFAU085_RS10820617-2.801296hypothetical protein
EFAU085_RS10825517-4.063035glycosyl hydrolase family 88
EFAU085_RS10830214-3.239733ABC transporter permease
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS10810GPOSANCHOR310.014 Gram-positive coccus surface protein anchor signature.
		>GPOSANCHOR#Gram-positive coccus surface protein anchor signature.

Length = 539

Score = 31.2 bits (70), Expect = 0.014
Identities = 21/110 (19%), Positives = 36/110 (32%), Gaps = 5/110 (4%)

Query: 532 EKKQEEEEIAELLAQDEPESAPAPTNKSDYYQSKEQQKLIRSLQRKITQVEEEMARIDEW 591
K E+ + + +SA T +++ + +Q L++ +
Sbjct: 226 RKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQA---ELEKALEGAMNFSTADSAK 282

Query: 592 IDQLEQEMVAPENLEDHVKLNELNQDLEAARQDQETKLTEWEELSLELEE 641
I LE E + L +Q L A RQ L E +LE
Sbjct: 283 IKTLEAEK--AALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEA 330


17EFAU085_RS10875EFAU085_RS11125Y        Y        YPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
EFAU085_RS108752130.487374glycerophosphodiester phosphodiesterase
EFAU085_RS108803150.213781hypothetical protein
EFAU085_RS108852151.156031ATP-dependent Clp protease proteolytic subunit
EFAU085_RS108902151.303091acetyltransferase
EFAU085_RS109002141.096466ABC transporter
EFAU085_RS109050160.211795multidrug ABC transporter ATP-binding protein
EFAU085_RS10910-218-1.171511hypothetical protein
EFAU085_RS10915-117-1.931329Ribonuclease J 1
EFAU085_RS10920523-7.548103cold-shock protein
EFAU085_RS10925728-8.974374DNA repair protein
EFAU085_RS10935324-6.806481*hypothetical protein
EFAU085_RS10940322-6.169437hypothetical protein
EFAU085_RS10945322-5.610340hypothetical protein
EFAU085_RS10950321-4.909537hypothetical protein
EFAU085_RS10960421-4.288966*hypothetical protein
EFAU085_RS10965319-1.403057N-acetylmuramoyl-L-alanine amidase
EFAU085_RS10970520-2.019483holin
EFAU085_RS10975525-3.060302hypothetical protein
EFAU085_RS10980426-3.610610hypothetical protein
EFAU085_RS10985427-3.885460hypothetical protein
EFAU085_RS10990528-3.759950hypothetical protein
EFAU085_RS10995429-4.651146hypothetical protein
EFAU085_RS11005431-5.275520phage minor structural protein
EFAU085_RS11010130-6.907077tail protein
EFAU085_RS11020-133-6.791301hypothetical protein
EFAU085_RS11025031-5.978737tail protein
EFAU085_RS11030-127-6.928211hypothetical protein
EFAU085_RS11035025-6.379458hypothetical protein
EFAU085_RS11045022-5.721793hypothetical protein
EFAU085_RS11050020-4.613869hypothetical protein
EFAU085_RS11055019-4.126784hypothetical protein
EFAU085_RS11060020-3.957823hypothetical protein
EFAU085_RS11065019-3.626534hypothetical protein
EFAU085_RS11075-117-3.442548portal protein
EFAU085_RS11080019-1.801246hypothetical protein
EFAU085_RS11085219-1.158297small subunit of terminase
EFAU085_RS11090323-0.735270hypothetical protein
EFAU085_RS11095323-1.069718hypothetical protein
EFAU085_RS11105221-0.844920*hypothetical protein
EFAU085_RS11110327-0.534649autolysin
EFAU085_RS11115225-1.611744ArpT
EFAU085_RS11120329-1.529584toxin PIN
EFAU085_RS11125326-1.330053hypothetical protein
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS11065PF04619260.017 Dr-family adhesin
		>PF04619#Dr-family adhesin

Length = 160

Score = 26.4 bits (58), Expect = 0.017
Identities = 12/31 (38%), Positives = 13/31 (41%), Gaps = 5/31 (16%)

Query: 38 WNGNYAYVVIGDQTVNYQDNTPVDKNTVNLT 68
W G V G QT NTP T+ LT
Sbjct: 129 WGGIIGIYVDGQQT-----NTPPGNYTLTLT 154


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS11085PHPHTRNFRASE310.006 Phosphoenolpyruvate-protein phosphotransferase sign...
		>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase

signature.
Length = 572

Score = 30.9 bits (70), Expect = 0.006
Identities = 21/104 (20%), Positives = 42/104 (40%), Gaps = 14/104 (13%)

Query: 144 RIQQAEAGLNDEEVERL--------QQLRKIKNPIEKNGKK-----LEIKREVMQDVQIS 190
I++ E+E+L ++LR IK+ E + V+ D ++
Sbjct: 28 DIEKTSITDVSTEIEKLTAALEKSKEELRAIKDQTEASMGADKAEIFAAHLLVLDDPELV 87

Query: 191 RKKHRKIDDI-LSIEDSLTRISNQLAKAIKQMNELYMNEYRTDL 233
KI++ ++ E +L +S+ + M+ YM E D+
Sbjct: 88 DGIKGKIENEQMNAEYALKEVSDMFVSMFESMDNEYMKERAADI 131


18EFAU085_RS11175EFAU085_RS11205Y        NNGenomic Island
LocusTagDNBiasCDNBias%GCBiasProduct
EFAU085_RS11175330-7.035888hypothetical protein
EFAU085_RS11180230-8.706096hypothetical protein
EFAU085_RS11185126-7.595301hypothetical protein
EFAU085_RS11190123-6.972275hypothetical protein
EFAU085_RS11195020-5.588143DNA-binding protein
EFAU085_RS11205-115-3.262148membrane protein
19EFAU085_RS12095EFAU085_RS12490Y        Y        YPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
EFAU085_RS120952120.464579hypothetical protein
EFAU085_RS121001120.351569metallo-hydrolase
EFAU085_RS121051100.067672hypothetical protein
EFAU085_RS12110190.076761hypothetical protein
EFAU085_RS1211529-0.405928sensor histidine kinase
EFAU085_RS12120014-2.275853PhoP family transcriptional regulator
EFAU085_RS12125217-4.291660hypothetical protein
EFAU085_RS12130321-5.892099hypothetical protein
EFAU085_RS12145020-4.242350*hypothetical protein
EFAU085_RS12150022-3.878069hypothetical protein
EFAU085_RS12155024-5.009815hypothetical protein
EFAU085_RS12160120-3.535104hypothetical protein
EFAU085_RS12165219-3.126446transposase
EFAU085_RS12170219-2.586896integrase
EFAU085_RS12175121-3.405502transposase
EFAU085_RS12185319-2.932966*hypothetical protein
EFAU085_RS12190219-1.605247N-acetylmuramoyl-L-alanine amidase
EFAU085_RS12195219-2.208364holin
EFAU085_RS12200219-2.035259holin
EFAU085_RS12205117-0.160910hypothetical protein
EFAU085_RS12210216-0.250369hypothetical protein
EFAU085_RS122150160.036233hypothetical protein
EFAU085_RS122201170.861608hypothetical protein
EFAU085_RS122252191.447766hypothetical protein
EFAU085_RS122302201.977104tail protein
EFAU085_RS122353241.588212hypothetical protein
EFAU085_RS122403261.769027hypothetical protein
EFAU085_RS122453191.554220phi13 family phage major tail protein
EFAU085_RS122503191.812075hypothetical protein
EFAU085_RS122553162.083133hypothetical protein
EFAU085_RS122601171.722031head-tail adaptor protein
EFAU085_RS122651170.663280DNA packaging protein, QLRG family
EFAU085_RS122702160.797942phage major capsid protein, HK97 family
EFAU085_RS122752201.389578Clp protease
EFAU085_RS122802221.249986portal protein
EFAU085_RS122850230.650373terminase
EFAU085_RS122901250.645406group I intron endonuclease
EFAU085_RS122953282.687283hypothetical protein
EFAU085_RS123008351.968633terminase
EFAU085_RS1230511381.541845HNH endonuclease
EFAU085_RS12310836-1.571167hypothetical protein
EFAU085_RS12315632-0.999577hypothetical protein
EFAU085_RS12320432-1.626483hypothetical protein
EFAU085_RS12325531-2.482640thymidylate synthase
EFAU085_RS12330327-2.265631autolysin
EFAU085_RS12335023-2.891504hypothetical protein
EFAU085_RS12340116-1.240805hypothetical protein
EFAU085_RS12345216-0.742942hypothetical protein
EFAU085_RS12350216-0.450484hypothetical protein
EFAU085_RS123550170.095568hypothetical protein
EFAU085_RS12360-214-1.298590MazG nucleotide pyrophosphohydrolase domain
EFAU085_RS12365-215-1.801019hypothetical protein
EFAU085_RS12370-117-2.372579molecular chaperone GroES
EFAU085_RS12375018-3.012407antitoxin
EFAU085_RS12380017-3.106103hypothetical protein
EFAU085_RS12385017-3.258465phage/plasmid primase, P4 family
EFAU085_RS12390-120-2.948998hypothetical protein
EFAU085_RS12395-120-2.645210hypothetical protein
EFAU085_RS12400119-2.701459phage nucleotide-binding protein
EFAU085_RS12405318-2.558461hypothetical protein
EFAU085_RS12410320-4.502119hypothetical protein
EFAU085_RS12415323-5.496251excisionase family DNA binding domain-containing
EFAU085_RS12420423-6.567122hypothetical protein
EFAU085_RS12425524-6.175522helix-turn-helix protein
EFAU085_RS12435423-6.328435hypothetical protein
EFAU085_RS12440224-6.527728hypothetical protein
EFAU085_RS12445424-5.765695hypothetical protein
EFAU085_RS12450424-5.052128hypothetical protein
EFAU085_RS12455324-5.255334signal peptidase
EFAU085_RS12460021-4.268879iron ABC transporter ATPase
EFAU085_RS12465022-5.440758peptide ABC transporter ATP-binding protein
EFAU085_RS12470224-5.075615bacteriocin
EFAU085_RS12475326-6.660228bacteriocin
EFAU085_RS12480326-6.995945LytTR family transcriptional regulator
EFAU085_RS12485217-4.072679transposase
EFAU085_RS12490016-3.701597histidine kinase
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS12115PF06580394e-05 Sensor histidine kinase
		>PF06580#Sensor histidine kinase

Length = 349

Score = 39.1 bits (91), Expect = 4e-05
Identities = 39/209 (18%), Positives = 70/209 (33%), Gaps = 54/209 (25%)

Query: 415 PNFLKVTLDETDRMIR--------MINDLLNLSRMDTGNTQLQLEYVNFNELVNFVLDRF 466
P+F+ L+ +I M+ L L R + + V+ + + V
Sbjct: 172 PHFMFNALNNIRALILEDPTKAREMLTSLSELMRYSLRYSNARQ--VSLADELTVVDSYL 229

Query: 467 DMMVGNQEKNYKIRREFTQRDLWVEVDTDK----------IIQ-VVDNIMNNAIKYSPDG 515
+ I+ F R L E + ++Q +V+N + + I P G
Sbjct: 230 QLA--------SIQ--FEDR-LQFENQINPAIMDVQVPPMLVQTLVENGIKHGIAQLPQG 278

Query: 516 GTITCRLLETHNNVILSITDQGLGIPKKDLNRVFERFYRVDKARARAQGGTGLGLAISRE 575
G I + + + V L + + G K + TG GL RE
Sbjct: 279 GKILLKGTKDNGTVTLEVENTGSLALKNT------------------KESTGTGLQNVRE 320

Query: 576 VIKAHRG---AIWAESKEGKGSTFYISLP 601
++ G I K+GK + + +P
Sbjct: 321 RLQMLYGTEAQIKLSEKQGKVNAM-VLIP 348


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS12120HTHFIS993e-26 FIS bacterial regulatory protein HTH signature.
		>HTHFIS#FIS bacterial regulatory protein HTH signature.

Length = 484

Score = 99.1 bits (247), Expect = 3e-26
Identities = 32/138 (23%), Positives = 71/138 (51%), Gaps = 2/138 (1%)

Query: 3 KVLVVDDEKPISDIVKFNLAKEGYDVYTAYDGEEALEKVAEVEPDLILLDLMLPKMDGLE 62
+LV DD+ I ++ L++ GYDV + +A + DL++ D+++P + +
Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64

Query: 63 VAREVRKTY-DMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARV-KANLRRGA 120
+ ++K D+P+++++A+++ + + E GA DY+ KPF EL+ + +A
Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124

Query: 121 TAAKEPEEAAPAELTIGD 138
+K +++ +G
Sbjct: 125 RPSKLEDDSQDGMPLVGR 142


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS12230GPOSANCHOR604e-11 Gram-positive coccus surface protein anchor signature.
		>GPOSANCHOR#Gram-positive coccus surface protein anchor signature.

Length = 539

Score = 60.1 bits (145), Expect = 4e-11
Identities = 56/321 (17%), Positives = 110/321 (34%), Gaps = 20/321 (6%)

Query: 24 NTLDEINAKVKQAESNMRANLKAYDSAGRSYEALSQKTKDLSTVMEGQNAKVRELTKRRD 83
++ ++ A + A+ + AL+ + DL +EG + +
Sbjct: 120 ARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIK 179

Query: 84 EAISKYGEESKQVANLNTQINNATAKYNAYSRQLNDTKKELVYSKTAVNDLSNEIKENER 143
++ + A L + A A S ++ + E DL ++
Sbjct: 180 TLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMN 239

Query: 144 QMNAEVKALKAAGDESGAFEAKQKGLAKQTELSEKAIEEQRKVVKLMADEFGDSANETED 203
A+ +K E A EA+Q L EKA+E + + E
Sbjct: 240 FSTADSAKIKTLEAEKAALEARQAEL-------EKALEGAMNFSTADSAKIKTLEAEKAA 292

Query: 204 AKRALEKLERQSQISSRQLEALK---SSSDQSGKEIEDFGDKSTR----SARKLDGLKDK 256
+ LE QSQ+ + ++L+ +S ++ K++E K S L+
Sbjct: 293 LEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRD 352

Query: 257 LSSLKSAF--SFGAVAGLAHNAISSVVSGVQGLVGEAVNASDSLMKFSKTMEFANFGKSQ 314
L + + A L S S Q L + + ++ + K +E AN S+
Sbjct: 353 LDASREAKKQLEAEHQKLEEQNKISEAS-RQSLRRDLDASREAKKQVEKALEEAN---SK 408

Query: 315 IESSKKEMKDYADKTVYGLEE 335
+ + +K K+ + +E
Sbjct: 409 LAALEKLNKELEESKKLTEKE 429



Score = 40.0 bits (93), Expect = 6e-05
Identities = 20/157 (12%), Positives = 44/157 (28%), Gaps = 15/157 (9%)

Query: 109 KYNAYSRQLNDTKKELVYSKTAVNDLSNEIKENERQMNAEVKALKAAGDESGAFEAKQKG 168
+ + + + N K + L + E +++ + L+ +K +
Sbjct: 58 RADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQE 117

Query: 169 LAKQTELSEKAIEEQRKVVKLMADEFGDSANETEDAKRALEK----LERQSQISSRQLEA 224
L + EKA+E + LE L + + LE
Sbjct: 118 LEARKADLEKALEGAMNFST-----------ADSAKIKTLEAEKAALAARKADLEKALEG 166

Query: 225 LKSSSDQSGKEIEDFGDKSTRSARKLDGLKDKLSSLK 261
+ S +I+ + + L+ L
Sbjct: 167 AMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAM 203


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS12365IGASERPTASE300.009 IgA-specific serine endopeptidase (S6) signature.
		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.

Length = 1541

Score = 30.4 bits (68), Expect = 0.009
Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 10/117 (8%)

Query: 139 SLLDVLSGDSSKVEAEVLTNFAKSVESKGFEVEDVTLGVPDVDKETQKSIDAIIRAGQEN 198
++++ AE +K+VE + + T +V KE + ++ A Q N
Sbjct: 1027 PPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKA---NTQTN 1083

Query: 199 EKAKLDAETAKTQ-------ADSEAYKKTKAAEAEAESNRKVAESVTDNLIRYEEAQ 248
E A+ +ET +TQ A E +K K + + KV V+ + E Q
Sbjct: 1084 EVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQ 1140


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS12440ACETATEKNASE300.015 Acetate kinase family signature.
		>ACETATEKNASE#Acetate kinase family signature.

Length = 400

Score = 30.2 bits (68), Expect = 0.015
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 5/59 (8%)

Query: 288 IKENKKIRWKLNIKKLRHYFIFDTKQDGTLPRGSYLYKKFKRFTKRHNLRHIRFHDIRH 346
IK +I + + +FDT T+P +YLY + ++ +R FH H
Sbjct: 130 IKACTQI-----MPDVPMVAVFDTAFHQTMPDYAYLYPIPYEYYTKYKIRKYGFHGTSH 183


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS12450MICOLLPTASE280.028 Microbial collagenase metalloprotease (M9) signature.
		>MICOLLPTASE#Microbial collagenase metalloprotease (M9) signature.

Length = 1104

Score = 28.1 bits (62), Expect = 0.028
Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 18 GYKMNKKSGIETLPNYVFAGFWLRFFA 44
Y + GI TL ++ AG++L F+
Sbjct: 151 TYTADDDKGIPTLVEFLRAGYYLGFYN 177


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS12460RTXTOXIND834e-19 Gram-negative bacterial RTX secretion protein D signat...
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

signature.
Length = 478

Score = 82.6 bits (204), Expect = 4e-19
Identities = 79/448 (17%), Positives = 161/448 (35%), Gaps = 48/448 (10%)

Query: 9 HSSIYTKQHHSFYRWVLYPVILFLCIIGLFLTFAKKEVVIRTTAQLNPEKIEKLQVPLEA 68
H + R V Y ++ FL I + + E+V +L K P+E
Sbjct: 45 HLELIETPVSRRPRLVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIEN 104

Query: 69 KIMEN-FLKENQFVHKDDVLVRLDCSLIENEKAQIEQENQRITQQIKMAQLFIESISKGK 127
I++ +KE + V K DVL++L E + + + + + Q+ SI K
Sbjct: 105 SIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNK 164

Query: 128 NLFSTDDSFGYSNQLKSMLSEKESLRYALKQSELNDQKQLEVYEKTKRQLEKQIESSDSK 187
Y +SE+E LR ++Q ++ K Q E ++ ++
Sbjct: 165 LPELKLPDEPYFQN----VSEEEVLRLT-----SLIKEQFSTWQNQKYQKELNLDKKRAE 215

Query: 188 LQEWQQVQVAWSNNQSLKDFSKEMMANYENWQEQLNNVSDDQKNQVKLTISASINEQIEQ 247
V + ++L K + ++ L + K+ V + +
Sbjct: 216 RLT---VLARINRYENLSRVEKSRLDDF----SSLLHKQAIAKHAVL-----EQENKYVE 263

Query: 248 LKKEVEQYQSEKAKLVKPTTSENDRISQ-TEKGKQELEQAITTVKQTVTELNEKQEKNQS 306
E+ Y+S+ ++ S + T+ K E+ + + L + KN
Sbjct: 264 AVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKN-- 321

Query: 307 VIKSLDDQLSKGILKAPVSGTVH-LNEETKGQAELAKGTVLAEIYPIHEKSKMKFTALLP 365
+++ +++APVS V L T+G + L I P E ++ TAL+
Sbjct: 322 -----EERQQASVIRAPVSVKVQQLKVHTEGGV-VTTAETLMVIVP--EDDTLEVTALVQ 373

Query: 366 ANESTYIKEGMKVHFKLD----QKGGAPITIDGTLDEISENSTATEKG--VFYAVKGTLK 419
+ +I G K++ + G + G + I+ ++ ++ VF + +
Sbjct: 374 NKDIGFINVGQNAIIKVEAFPYTRYG---YLVGKVKNINLDAIEDQRLGLVFNVIISIEE 430

Query: 420 TT-----QSFPFRYGLTGELSLIVGEKT 442
++ P G+ + G ++
Sbjct: 431 NCLSTGNKNIPLSSGMAVTAEIKTGMRS 458


20EFAU085_RS13930EFAU085_RS14310Y        Y        YPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
EFAU085_RS13930-216-3.906289DNA mismatch repair protein MutS
EFAU085_RS13935-119-4.272812glycosyl hydrolase, family 38
EFAU085_RS13940-117-3.174135PTS lactose transporter subunit IIBC
EFAU085_RS13945-215-3.357765PTS fructose transporter subunit IIB
EFAU085_RS13950-214-2.580655PTS mannose transporter subunit IIAB
EFAU085_RS13955-214-2.004611transcriptional antiterminator
EFAU085_RS13960-1150.788891histidine kinase
EFAU085_RS139650160.880802XRE family transcriptional regulator
EFAU085_RS139702160.967051ABC transporter
EFAU085_RS139752190.915920ABC transporter
EFAU085_RS139802200.478583hypothetical protein
EFAU085_RS13985219-0.243176cell wall surface anchor protein
EFAU085_RS13990219-0.476213conjugative transposon protein
EFAU085_RS13995118-1.286313conjugative transposon protein
EFAU085_RS14000118-1.498567hypothetical protein
EFAU085_RS140052180.054548cell division protein FtsK
EFAU085_RS140102160.199208reverse transcriptase
EFAU085_RS14015115-0.544335IS1380 family transposase
EFAU085_RS14020215-0.610374reverse transcriptase
EFAU085_RS14025215-1.152271cell division protein FtsK
EFAU085_RS14030216-2.754681DNA methyltransferase
EFAU085_RS14035118-4.431173Cro/Cl family transcriptional regulator
EFAU085_RS14040222-5.542562RNA-directed DNA polymerase
EFAU085_RS14045121-4.480676antirestriction protein ArdA
EFAU085_RS14050222-5.788792hypothetical protein
EFAU085_RS14055222-5.065336ThiF family protein
EFAU085_RS14060119-1.808876hypothetical protein
EFAU085_RS14065121-0.676676hypothetical protein
EFAU085_RS14070120-0.035396transposase
EFAU085_RS14075222-0.820152hypothetical protein
EFAU085_RS14080223-0.159528membrane protein
EFAU085_RS14085221-0.711192ATP/GTP-binding protein
EFAU085_RS14090321-1.737721conjugative transposon membrane protein
EFAU085_RS14095423-4.910677peptidase P60
EFAU085_RS14100722-3.746276conjugative transposon protein
EFAU085_RS14105823-3.877478hypothetical protein
EFAU085_RS14115823-4.610888hypothetical protein
EFAU085_RS14120722-4.730650N-acetylmuramoyl-L-alanine amidase
EFAU085_RS14125723-4.993648pyridine nucleotide-disulfide oxidoreductase
EFAU085_RS14130719-4.040665Enterococcal surface protein
EFAU085_RS14135319-5.329086hypothetical protein
EFAU085_RS14140322-4.713577AraC family transcriptional regulator
EFAU085_RS14145225-2.085140hypothetical protein
EFAU085_RS14150125-0.625920hypothetical protein
EFAU085_RS14155023-0.543272transposase
EFAU085_RS14160-119-1.296809transposase
EFAU085_RS14165121-3.817601membrane protein
EFAU085_RS14175019-3.522928transposase
EFAU085_RS14180120-3.586876transposase
EFAU085_RS14185122-4.278427hypothetical protein
EFAU085_RS14190020-3.602160zinc-binding protein
EFAU085_RS14195121-4.464658cobalamin synthesis protein CobW
EFAU085_RS14200222-4.19068050S ribosomal protein L33
EFAU085_RS14205323-4.991644hypothetical protein
EFAU085_RS14210321-5.22709750S ribosomal protein L32-2
EFAU085_RS14215523-5.87895530S ribosomal protein S14 1
EFAU085_RS14220524-6.588112ABC transporter ATP-binding protein
EFAU085_RS14230525-6.944976membrane protein
EFAU085_RS14245215-3.940778TetR family transcriptional regulator
EFAU085_RS14250113-1.937141manganese ABC transporter substrate-binding
EFAU085_RS142551170.108249membrane protein
EFAU085_RS142601182.407893manganese ABC transporter ATP-binding protein
EFAU085_RS142652234.080619PTS cellobiose transporter subunit IIC
EFAU085_RS142702234.830065transporter
EFAU085_RS142751193.840212inosose dehydratase
EFAU085_RS142801193.740243myo-inositol 2-dehydrogenase
EFAU085_RS142851214.305065inositol 2-dehydrogenase
EFAU085_RS142900223.902490alcohol dehydrogenase
EFAU085_RS142950233.637083methylmalonate-semialdehyde dehydrogenase
EFAU085_RS143000212.793258transposase, IS116/IS110/IS902 family
EFAU085_RS143050253.2639635-deoxyglucuronate isomerase
EFAU085_RS14310-1223.0525273D-(3,5/4)-trihydroxycyclohexane-1,2-dione
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS13965HTHFIS861e-21 FIS bacterial regulatory protein HTH signature.
		>HTHFIS#FIS bacterial regulatory protein HTH signature.

Length = 484

Score = 85.7 bits (212), Expect = 1e-21
Identities = 34/129 (26%), Positives = 64/129 (49%), Gaps = 2/129 (1%)

Query: 6 TILIIEDDEAVHSLLEEVLEQR-YKLLDAYSGTEGKLLLSTYPVDLILLDLMLPGLSGEA 64
TIL+ +DD A+ ++L + L + Y + + ++ DL++ D+++P +
Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64

Query: 65 LLAEIRQT-SNVPIIVLSAKSDQRDKVSLLAAGADDYVTKPFDIEELLLRIGIQLRHQTS 123
LL I++ ++P++V+SA++ + GA DY+ KPFD+ EL+ IG L
Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124

Query: 124 VQVKDLSQR 132
K
Sbjct: 125 RPSKLEDDS 133


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS14090TYPE4SSCAGX310.021 Type IV secretion system CagX conjugation protein si...
		>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein

signature.
Length = 522

Score = 30.9 bits (69), Expect = 0.021
Identities = 32/132 (24%), Positives = 64/132 (48%), Gaps = 10/132 (7%)

Query: 560 KGIEKTKKAPEEFKRGLVQEKANRGELREKQQQRRDEKIAEKRKVLNEIGNPHGKRRENV 619
K +E+ KKA E+ K Q + + + REK+++ R + A + N + NP N
Sbjct: 139 KELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANLENLTNAMSNPQ-NLSNNK 197

Query: 620 PIKAKVQSQKDRAPKRIVRANSNPEIKRKFASQEIISKGINQSSSKKNSFQQVKRRS--T 677
+ ++ Q++ ++ R E + A ++I + +KK + + V++R+
Sbjct: 198 NLSELIKQQRENELDQMERLEDMQEQAQANALKQI------EELNKKQAEEAVRQRAKDK 251

Query: 678 LSKRTNRKVQKS 689
+S +T+ K QKS
Sbjct: 252 ISIKTD-KSQKS 262


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS14100YERSSTKINASE290.033 Yersinia serine/threonine protein kinase signature.
		>YERSSTKINASE#Yersinia serine/threonine protein kinase signature.

Length = 732

Score = 28.6 bits (63), Expect = 0.033
Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 9/130 (6%)

Query: 92 KEAIEKRMNNLEQYLTEEGFALSQDMVRADIPTNSEVQSVKVLDVEKSSEEFVVSFLVEQ 151
K + +++N L+Q LS + R+ + QS++ D S VV F EQ
Sbjct: 601 KITLSQQLNTLQQQQESAKAQLSILINRSGSWADVARQSLQRFD----STRPVVKFGTEQ 656

Query: 152 KITEGKKAQSISSAY---RVTIFEDENRNYIVTSLPTMIAKPDRAKYKTKQVENDSKIDA 208
++ + +A V+ F D+ RN+ V S+P +I + VE K+
Sbjct: 657 YTAIHRQMMAAHAAITLQEVSEFTDDMRNFTVDSIPLLIQLGRSSLMDEHLVEQREKLRE 716

Query: 209 KTTEEIAEFL 218
TT IAE L
Sbjct: 717 LTT--IAERL 724


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS14120FLGFLGJ681e-14 Flagellar protein FlgJ signature.
		>FLGFLGJ#Flagellar protein FlgJ signature.

Length = 313

Score = 68.2 bits (166), Expect = 1e-14
Identities = 48/155 (30%), Positives = 79/155 (50%), Gaps = 10/155 (6%)

Query: 192 ENFIMKIGESARKIGQKYDLYASVMIAQAILESASGQSQLAQA---PNYNLFGIKGTYN- 247
+ F+ ++ A+ Q+ + +++AQA LES GQ Q+ + P+YNLFG+K + N
Sbjct: 150 KAFLAQLSLPAQLASQQSGVPHHLILAQAALESGWGQRQIRRENGEPSYNLFGVKASGNW 209

Query: 248 GNFVIMVTNEDLGNGTLYTTQSKFRVYENYEESFEDYAKLLTKGISGNKDFYAGALKANS 307
V +T + NG ++KFRVY +Y E+ DY LLT+ N + A A++
Sbjct: 210 KGPVTEITTTEYENGEAKKVKAKFRVYSSYLEALSDYVGLLTR----NPRYAAVTTAASA 265

Query: 308 KTYREATKFLTGRYATDTQYYLKLNELIKTYDLTN 342
+ +A + YATD Y KL +I+ +
Sbjct: 266 EQGAQALQ--DAGYATDPHYARKLTNMIQQMKSIS 298


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS14125NUCEPIMERASE356e-04 Nucleotide sugar epimerase signature.
		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

Length = 334

Score = 34.8 bits (80), Expect = 6e-04
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 4/53 (7%)

Query: 156 GAGYIGVEIAEAIRKRGKEVYLFDVADRVLSTYYDRSFSDKVEEILSKNGIHL 208
AG+IG +++ + + G +V D L+ YYD S E+L++ G
Sbjct: 8 AAGFIGFHVSKRLLEAGHQVVGID----NLNDYYDVSLKQARLELLAQPGFQF 56


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS14130GPOSANCHOR330.009 Gram-positive coccus surface protein anchor signature.
		>GPOSANCHOR#Gram-positive coccus surface protein anchor signature.

Length = 539

Score = 33.5 bits (76), Expect = 0.009
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 1658 NEKDSEKAVSKDNKTDNQGSKQNKNRGKSSPQKQSSKAYPKTGEIDSNIFTISGGLILLG 1717
+ K KAV + G+K N+N+ +P K++ + P TGE +N F + L ++
Sbjct: 470 DAKPGNKAVPGKGQAPQAGTKPNQNK---APMKETKRQLPSTGE-TANPFFTAAALTVMA 525

Query: 1718 TLGLLGYKNRKKEN 1731
T G+ RK+EN
Sbjct: 526 TAGVAAVVKRKEEN 539


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS14190adhesinb2341e-75 Adhesin B signature.
		>adhesinb#Adhesin B signature.

Length = 310

Score = 234 bits (599), Expect = 1e-75
Identities = 85/316 (26%), Positives = 150/316 (47%), Gaps = 16/316 (5%)

Query: 1 MKKISVGLIGIAALGLLGACSSTNDAKVSNDKDGKLEIVTTFYPMYDFTKNIVGDEANVD 60
MKK ++ + A L ACSS + + KL +V T + D TKNI GD+ N+
Sbjct: 1 MKKCRFLVLLLLAFVGLAACSSQKSSTETGS--SKLNVVATNSIIADITKNIAGDKINLH 58

Query: 61 LMVPAGSEPHDYEPSAKDMAKAHDADVFVYHNENMES----WVPKAKESWKKAGPNVVEG 116
+VP G +PH+YEP +D+ K AD+ Y+ N+E+ W K E+ KK
Sbjct: 59 SIVPVGQDPHEYEPLPEDVKKTSQADLIFYNGINLETGGNAWFTKLVENAKKKENKDYYA 118

Query: 117 TKDMILLPGSEEEDHDHGEEDHHHELDPHTWVSPKMAIKEVSNIKDQLVKLYPKKAKVFE 176
+ + + E + E DPH W++ + I NI +L + P + +E
Sbjct: 119 VSEGVDVIYLEGQSEKGKE-------DPHAWLNLENGIIYAQNIAKRLSEKDPANKETYE 171

Query: 177 TNAEKYLTKLKRLDADYTTSLKE--AKQKSFVTQHAAFGYLALDYGLIQVPIAGLSPEEE 234
N + Y+ KL LD + ++K VT F Y + Y + I ++ EEE
Sbjct: 172 KNLKAYVEKLSALDKEAKEKFNNIPGEKKMIVTSEGCFKYFSKAYNVPSAYIWEINTEEE 231

Query: 235 PSSGRLAELKEYVKKNKINYIYFEKNANDKIAKTLANEAGIKLEVLNPLESLTKEQMDNG 294
+ ++ L E ++K K+ ++ E + +D+ KT++ + I + +S+ ++ + G
Sbjct: 232 GTPDQIKTLVEKLRKTKVPSLFVESSVDDRPMKTVSKDTNIPIYAKIFTDSVAEKG-EEG 290

Query: 295 EDYVSVMEDNLKALEK 310
+ Y S+M+ NL+ + +
Sbjct: 291 DSYYSMMKYNLEKIAE 306


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS14245HTHTETR418e-07 TetR bacterial regulatory protein HTH signature.
		>HTHTETR#TetR bacterial regulatory protein HTH signature.

Length = 215

Score = 40.8 bits (95), Expect = 8e-07
Identities = 15/36 (41%), Positives = 19/36 (52%)

Query: 3 AGVTTGAFYKHFTSKEALFEEIIQPHINALINMYNE 38
AGVT GA Y HF K LF EI + + + + E
Sbjct: 41 AGVTRGAIYWHFKDKSDLFSEIWELSESNIGELELE 76


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS14250adhesinb419e-150 Adhesin B signature.
		>adhesinb#Adhesin B signature.

Length = 310

Score = 419 bits (1078), Expect = e-150
Identities = 239/315 (75%), Positives = 278/315 (88%), Gaps = 5/315 (1%)

Query: 2 MRKWKAVLGSLGILIALFIFGACSTNSKDKDTVASNEKLKVVVTNSILADITENIAKDKI 61
M+K + ++ +L+A ACS+ +T + KL VV TNSI+ADIT+NIA DKI
Sbjct: 1 MKKCRFLVL---LLLAFVGLAACSSQKSSTET--GSSKLNVVATNSIIADITKNIAGDKI 55

Query: 62 DLHSIVPIGKDPHEYEPLPEDVQKTSKADLIFYNGVNLETGGNAWFTKLVKNANKEENKD 121
+LHSIVP+G+DPHEYEPLPEDV+KTS+ADLIFYNG+NLETGGNAWFTKLV+NA K+ENKD
Sbjct: 56 NLHSIVPVGQDPHEYEPLPEDVKKTSQADLIFYNGINLETGGNAWFTKLVENAKKKENKD 115

Query: 122 YFAASDGIDVIYLEGQSEKGKEDPHAWLNLENGIIYAKNIEKQLAEKDPDNKKFYKENLD 181
Y+A S+G+DVIYLEGQSEKGKEDPHAWLNLENGIIYA+NI K+L+EKDP NK+ Y++NL
Sbjct: 116 YYAVSEGVDVIYLEGQSEKGKEDPHAWLNLENGIIYAQNIAKRLSEKDPANKETYEKNLK 175

Query: 182 KYIEKLDSLDKEAKSKFASIPNDKKMIVTSEGCFKYFSKAYNVPSAYIWEINTEEEGTPD 241
Y+EKL +LDKEAK KF +IP +KKMIVTSEGCFKYFSKAYNVPSAYIWEINTEEEGTPD
Sbjct: 176 AYVEKLSALDKEAKEKFNNIPGEKKMIVTSEGCFKYFSKAYNVPSAYIWEINTEEEGTPD 235

Query: 242 QIKHLVEKLRTTKVPSLFVESSVDDRPMKTVSKDTNIPIYSTIFTDSIAEKGQDGDSYYA 301
QIK LVEKLR TKVPSLFVESSVDDRPMKTVSKDTNIPIY+ IFTDS+AEKG++GDSYY+
Sbjct: 236 QIKTLVEKLRKTKVPSLFVESSVDDRPMKTVSKDTNIPIYAKIFTDSVAEKGEEGDSYYS 295

Query: 302 MMKWNLDKIAEGLSK 316
MMK+NL+KIAEGLSK
Sbjct: 296 MMKYNLEKIAEGLSK 310


21EFAU085_RS14430EFAU085_RS14485Y        Y        NPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
EFAU085_RS144302212.001123sugar ABC transporter ATP-binding protein
EFAU085_RS144352222.273699ABC transporter substrate-binding protein
EFAU085_RS144402242.653935sucrose phosphorylase
EFAU085_RS144453273.358258LacI family transcriptional regulator
EFAU085_RS144503283.753072DNA-directed RNA polymerase subunit beta'
EFAU085_RS144551244.056409DNA-directed RNA polymerase subunit beta
EFAU085_RS144601152.737283ABC transporter substrate-binding protein
EFAU085_RS144651142.678708ABC transporter permease
EFAU085_RS144701142.156229ABC transporter ATP-binding protein
EFAU085_RS144751141.864864biotin-acetyl-CoA-carboxylase ligase
EFAU085_RS144802122.104486hypothetical protein
EFAU085_RS144852151.562541collagen-binding MSCRAMM Scm (Fms10)
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS14470BINARYTOXINB290.027 Binary toxin B family signature.
		>BINARYTOXINB#Binary toxin B family signature.

Length = 764

Score = 28.9 bits (64), Expect = 0.027
Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 16/128 (12%)

Query: 18 TINENHVLK---GINLSLDP----GDFVTIIGGNGAGKSTLLNS---IAGTFSVDQGQIL 67
T+N N L+ L LD G+ T NG + ++ + +I+
Sbjct: 462 TMNYNQFLELEKTKQLRLDTDQVYGNIATYNFENGRVRVDTGSNWSEVLPQIQETTARII 521

Query: 68 LNGKNITKKSVVERSKSISRVFQDPKLGTAVRLTVEENLALAMKRGKKRG--FFRGVKPQ 125
NGK+ ++VER + + DP T +T++E L +A + G ++G
Sbjct: 522 FNGKD---LNLVER-RIAAVNPSDPLETTKPDMTLKEALKIAFGFNEPNGNLQYQGKDIT 577

Query: 126 DRTFFKDQ 133
+ F DQ
Sbjct: 578 EFDFNFDQ 585


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS14485ICENUCLEATIN330.004 Ice nucleation protein signature.
		>ICENUCLEATIN#Ice nucleation protein signature.

Length = 1258

Score = 32.8 bits (74), Expect = 0.004
Identities = 45/207 (21%), Positives = 80/207 (38%), Gaps = 2/207 (0%)

Query: 328 FISDNGTDTTDTSDSTDTSTTSDSSDSSTSSDSTDTTSTTSDSTDTSASSDSTDTTSTTS 387
I+ G+ T +ST T+ + + SD T +T + D S+ +T T
Sbjct: 304 LIAGYGSTQTAGEESTQTAGYGSTQTAQKGSDLTAGYGSTGTAGDDSSLIAGYGSTQTAG 363

Query: 388 DSTDTSASSDSTDTTSTTSDSTDTSASSDS--TDTTSTTSDSTDTSASSDSTDTTSTTSD 445
+ + +A ST T SD T S+ + D++ + +A +ST T S
Sbjct: 364 EDSSLTAGYGSTQTAQKGSDLTAGYGSTGTAGADSSLIAGYGSTQTAGEESTQTAGYGST 423

Query: 446 STDTSASSDSTDTSTTTSDSTDTSASSDSTDTTSTTSDSSDSSTTTSDSTDTSASSDSTD 505
T S + +T + D+S + T + DSS ++ S T S +
Sbjct: 424 QTAQKGSDLTAGYGSTGTAGDDSSLIAGYGSTQTAGEDSSLTAGYGSTQTAQKGSDLTAG 483

Query: 506 TSSTTSDSSDSSTSSDSTDTSSTTSDT 532
ST++ +SS + T + +
Sbjct: 484 YGSTSTAGYESSLIAGYGSTQTAGYGS 510



Score = 32.4 bits (73), Expect = 0.007
Identities = 42/216 (19%), Positives = 76/216 (35%), Gaps = 10/216 (4%)

Query: 328 FISDNGTDTTDTSDSTDTSTTSDSSDSSTSSDSTDTTSTTSDSTDTSASSDSTDTTSTTS 387
FI + D ++ + D + + + + D+T S S+ T T +
Sbjct: 104 FILHHRADYVACTEMQAGPGSPDVTSEVKVGNRSLPVTDDIDATIESGSTQPTQTIEIAT 163

Query: 388 DSTDTSASSDST-----DTTSTTSDSTDTSASSDSTDTTSTTSD-----STDTSASSDST 437
+ S + S +T T DS+ A ST T S + +A +S+
Sbjct: 164 YGSTLSGTHQSQLIAGYGSTETAGDSSTLIAGYGSTGTAGADSTLVAGYGSTQTAGEESS 223

Query: 438 DTTSTTSDSTDTSASSDSTDTSTTTSDSTDTSASSDSTDTTSTTSDSSDSSTTTSDSTDT 497
S T S + +T + D+S + T + DSS ++ S T
Sbjct: 224 QMAGYGSTQTGMKGSDLTAGYGSTGTAGDDSSLIAGYGSTQTAGEDSSLTAGYGSTQTAQ 283

Query: 498 SASSDSTDTSSTTSDSSDSSTSSDSTDTSSTTSDTR 533
S + ST + +DSS + T + ++
Sbjct: 284 KGSDLTAGYGSTGTAGADSSLIAGYGSTQTAGEEST 319



Score = 31.3 bits (70), Expect = 0.014
Identities = 43/207 (20%), Positives = 78/207 (37%), Gaps = 2/207 (0%)

Query: 328 FISDNGTDTTDTSDSTDTSTTSDSSDSSTSSDSTDTTSTTSDSTDTSASSDSTDTTSTTS 387
++ G+ T +S+ + + SD T +T + D S+ +T T
Sbjct: 208 LVAGYGSTQTAGEESSQMAGYGSTQTGMKGSDLTAGYGSTGTAGDDSSLIAGYGSTQTAG 267

Query: 388 DSTDTSASSDSTDTTSTTSDSTDT--SASSDSTDTTSTTSDSTDTSASSDSTDTTSTTSD 445
+ + +A ST T SD T S + D++ + +A +ST T S
Sbjct: 268 EDSSLTAGYGSTQTAQKGSDLTAGYGSTGTAGADSSLIAGYGSTQTAGEESTQTAGYGST 327

Query: 446 STDTSASSDSTDTSTTTSDSTDTSASSDSTDTTSTTSDSSDSSTTTSDSTDTSASSDSTD 505
T S + +T + D+S + T + DSS ++ S T S +
Sbjct: 328 QTAQKGSDLTAGYGSTGTAGDDSSLIAGYGSTQTAGEDSSLTAGYGSTQTAQKGSDLTAG 387

Query: 506 TSSTTSDSSDSSTSSDSTDTSSTTSDT 532
ST + +DSS + T + ++
Sbjct: 388 YGSTGTAGADSSLIAGYGSTQTAGEES 414


22EFAU085_RS01170EFAU085_RS01195N        Y        NPathogenicity Island (unbiased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
EFAU085_RS01170-114-2.533858serine protease
EFAU085_RS01175-316-1.78807450S rRNA methyltransferase
EFAU085_RS01180-217-2.089955membrane protein
EFAU085_RS01185-215-1.719815type I restriction endonuclease subunit S
EFAU085_RS01190-113-1.229804transcriptional regulator
EFAU085_RS01195-112-1.581641GNAT family acetyltransferase
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS01170V8PROTEASE575e-11 V8 serine protease family signature.
		>V8PROTEASE#V8 serine protease family signature.

Length = 336

Score = 56.6 bits (136), Expect = 5e-11
Identities = 33/160 (20%), Positives = 60/160 (37%), Gaps = 34/160 (21%)

Query: 141 VVTNNHVVDGQQGLEVLMK------------DGTKVKAELVGTDAYSDLAVLKINSDKVE 188
++TN HVVD G +K +G ++ DLA++K + ++
Sbjct: 114 LLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGEGDLAIVKFSPNEQN 173

Query: 189 -------TVASFGDSSALKVGEPAIAIGSPLG-SEYANSVTSGIISSLNRQVTSTNESNE 240
A+ +++ +V + G P + G I+ L
Sbjct: 174 KHIGEVVKPATMSNNAETQVNQNITVTGYPGDKPVATMWESKGKITYLK----------- 222

Query: 241 TVNINAIQTDAAINPGNSGGPLVNIEGQVIGINSSKIAST 280
A+Q D + GNSG P+ N + +VIGI+ + +
Sbjct: 223 ---GEAMQYDLSTTGGNSGSPVFNEKNEVIGIHWGGVPNE 259


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS0117556KDTSANTIGN270.041 Rickettsia 56kDa type-specific antigen protein sign...
		>56KDTSANTIGN#Rickettsia 56kDa type-specific antigen protein

signature.
Length = 533

Score = 26.8 bits (59), Expect = 0.041
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 14 KYLIQGINEYVKRLNAYAKIELIEVPDEKAPENLSEAQMRQVKEKEGERILAKIKE 69
K L I + + +A I I VPD P + S Q+ Q K +E L ++++
Sbjct: 262 KVLSDKIIQIYSDIKPFADIAGINVPDTGLPNSASIEQI-QSKIQELGDTLEELRD 316


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS01190HTHTETR447e-08 TetR bacterial regulatory protein HTH signature.
		>HTHTETR#TetR bacterial regulatory protein HTH signature.

Length = 215

Score = 43.8 bits (103), Expect = 7e-08
Identities = 17/94 (18%), Positives = 42/94 (44%)

Query: 1 MKKTDRRVKKTEKALAETLSTLLVNKKIQAITIRELTETADVHRSTFYTHYKDIYDLYDQ 60
+KT + ++T + + + L + + + ++ E+ + A V R Y H+KD DL+ +
Sbjct: 2 ARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61

Query: 61 LESNFFRDLNEILSYDPAHSYEELYTRLIDYVYA 94
+ ++ E+ A + + L + +
Sbjct: 62 IWELSESNIGELELEYQAKFPGDPLSVLREILIH 95


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS01195PF04183280.044 IucA / IucC family
		>PF04183#IucA / IucC family

Length = 580

Score = 27.5 bits (61), Expect = 0.044
Identities = 12/64 (18%), Positives = 26/64 (40%), Gaps = 7/64 (10%)

Query: 142 TKLLTEFE------KREKGKEIFLFTDSGCTYQFYERRG-FERLKEKISKIKILDKEIDL 194
K+L+E E +G + + G ++F RG + L ++ D+ +
Sbjct: 15 AKMLSELEYEQVFHAESQGDDRYCINLPGAQWRFIAERGIWGWLWIDAQTLRCADEPVLA 74

Query: 195 RCML 198
+ +L
Sbjct: 75 QTLL 78


23EFAU085_RS01845EFAU085_RS01910N        Y        NPathogenicity Island (unbiased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
EFAU085_RS01845-3101.718080N-acetylmuramoyl-L-alanine amidase
EFAU085_RS01850-3111.433874PTS sucrose transporter subunit IIBC
EFAU085_RS01855-2100.159394ribose pyranase
EFAU085_RS01860-290.209261ribokinase
EFAU085_RS01865-29-0.825627LacI family transcription regulator
EFAU085_RS01870-38-0.847549isochorismatase hydrolase
EFAU085_RS01875-29-1.120397macrolide ABC transporter ATP-binding protein
EFAU085_RS01880-19-1.633095ABC transporter permease
EFAU085_RS01885010-1.939774alpha-amylase
EFAU085_RS01890-111-2.547499putative permease
EFAU085_RS01895-111-2.082507zinc-binding protein
EFAU085_RS01900-19-2.762778iron ABC transporter substrate-binding protein
EFAU085_RS01905010-2.645779histidine kinase
EFAU085_RS01910213-2.173397accessory gene regulator B
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS01845FLGFLGJ751e-16 Flagellar protein FlgJ signature.
		>FLGFLGJ#Flagellar protein FlgJ signature.

Length = 313

Score = 74.7 bits (183), Expect = 1e-16
Identities = 52/151 (34%), Positives = 86/151 (56%), Gaps = 12/151 (7%)

Query: 460 FLKKIADDAQEIGQKEGIYASVMMAQAILESGSGNSLL---SSEPNHNLFGIK--GSYKG 514
FL +++ AQ Q+ G+ +++AQA LESG G + + EP++NLFG+K G++KG
Sbjct: 152 FLAQLSLPAQLASQQSGVPHHLILAQAALESGWGQRQIRRENGEPSYNLFGVKASGNWKG 211

Query: 515 SSVTFNTLEQDSSGQSYQIRAQFRKYPSYKESLEDYADLIKNGLTGNPDFYKPTWKSETK 574
T E ++ G++ +++A+FR Y SY E+L DY L LT NP + T + +
Sbjct: 212 PVTEITTTEYEN-GEAKKVKAKFRVYSSYLEALSDYVGL----LTRNPRYAAVTTAASAE 266

Query: 575 DYKEATKYLEGRYATDRQYSQKLNAIIEAYD 605
+A + + YATD Y++KL +I+
Sbjct: 267 QGAQALQ--DAGYATDPHYARKLTNMIQQMK 295


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS01855SHAPEPROTEIN270.029 Bacterial cell shape determinant MreB/Mbl protein s...
		>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein

signature.
Length = 347

Score = 26.6 bits (59), Expect = 0.029
Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 9/64 (14%)

Query: 38 EKIDLAVSNGLPSFLS---------VLENVLEELEVQSIELAEEIKTMNPEILEKIKLLL 88
E+I + + P + E V + S E+ E ++ I+ + + L
Sbjct: 216 ERIKHEIGSAYPGDEVREIEVRGRNLAEGVPRGFTLNSNEILEALQEPLTGIVSAVMVAL 275

Query: 89 PDTP 92
P
Sbjct: 276 EQCP 279


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS01870ISCHRISMTASE604e-13 Isochorismatase signature.
		>ISCHRISMTASE#Isochorismatase signature.

Length = 312

Score = 60.0 bits (145), Expect = 4e-13
Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 2/124 (1%)

Query: 75 TDMGGMTASVPPEFTDLLLKDSLKDTDNMLTITKYNPSAFFGTSLDLQLRRRGIETIILS 134
TD G + P ++ L D+ L +TK+ SAF T+L +R+ G + +I++
Sbjct: 92 TDFWGPGLNSGPYEEKII--TELAPEDDDLVLTKWRYSAFKRTNLLEMMRKEGRDQLIIT 149

Query: 135 GVATTNGVYATALDAFQHGYHIVLAEDACSDRDKESHQLFIKKIFPKTARVRSTKQIIEA 194
G+ G TA +AF DA +D E HQ+ ++ + A T +++
Sbjct: 150 GIYAHIGCLVTACEAFMEDIKAFFVGDAVADFSLEKHQMALEYAAGRCAFTVMTDSLLDQ 209

Query: 195 IQQS 198
+Q +
Sbjct: 210 LQNA 213


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS01875PF05272354e-04 Virulence-associated E family protein
		>PF05272#Virulence-associated E family protein

Length = 892

Score = 34.7 bits (79), Expect = 4e-04
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 9/65 (13%)

Query: 47 KGELVIIL-GPSGAGKSTILNILGGM----DTPDEGQIIIDDTDIAQ----FSDKQLTAY 97
K + ++L G G GKST++N L G+ DT + D + + ++TA+
Sbjct: 594 KFDYSVVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTGKDSYEQIAGIVAYELSEMTAF 653

Query: 98 RRTDV 102
RR D
Sbjct: 654 RRADA 658


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS01880GPOSANCHOR491e-07 Gram-positive coccus surface protein anchor signature.
		>GPOSANCHOR#Gram-positive coccus surface protein anchor signature.

Length = 539

Score = 48.5 bits (115), Expect = 1e-07
Identities = 43/292 (14%), Positives = 89/292 (30%), Gaps = 14/292 (4%)

Query: 53 VGTAGLSDLQIVSTGGLTQKDIAQAEKIPDAKVETGKQIYYSNTG----------KNEVI 102
GTA ++ V GL + ++ +T +++ KN +
Sbjct: 17 TGTASVAVALTVLGAGLVVNTNEVSAVATRSQTDTLEKVQERADKFEIENNTLKLKNSDL 76

Query: 103 QIFSYNKNNKQNKLQLTDGKLPEKPNQLVLDEKAEDEGYKIGDIYQIDSDELKEKEYTIT 162
+ + ++L EK + +E KI ++ +D K E +
Sbjct: 77 SFNNKALKDHNDELTEELSNAKEKLRKN-DKSLSEKAS-KIQELEARKADLEKALEGAMN 134

Query: 163 GFVRSPLFINNLERGYANVGNGSVDYFVYLPESVFKTDIYSVLYLDFTNVKNLNTYSKAY 222
I LE A + D L ++ + S K +A
Sbjct: 135 FSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAE 194

Query: 223 KDKMEQNQEKAEKYLQDRPEERLEELKKSANEELEPAQQKIADGKAQTTQARTRLEDAKK 282
+K + + + LE K + ++ + +T +++ +
Sbjct: 195 LEKALEGAMNFSTADSAK-IKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEA 253

Query: 283 QLAQQSATIQQLPEAQRTIAVQTLSQQEAQLAEQERQLVEKERELASAEEEL 334
+ A A +L E A+ + A++ E + E E A E +
Sbjct: 254 EKAALEARQAEL-EKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQS 304



Score = 35.4 bits (81), Expect = 0.001
Identities = 19/115 (16%), Positives = 34/115 (29%), Gaps = 10/115 (8%)

Query: 220 KAYKDKMEQNQEKAEKYLQDRPEERLEELKKSANEELEPAQQKIADGKAQTTQARTRLED 279
+ + + K + ++ LE + + LE A A+
Sbjct: 235 EGAMNFSTADSAKIKTLEAEK--AALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAA 292

Query: 280 AKKQLAQQSATIQQLPEAQRTIAVQTLSQQEAQLAEQERQLVEKERELASAEEEL 334
+ + A Q L A R Q+L + L + E E EE+
Sbjct: 293 LEAEKADLEHQSQVL-NANR----QSLRRD---LDASREAKKQLEAEHQKLEEQN 339


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS01895ADHESNFAMILY2495e-81 Adhesin family signature.
		>ADHESNFAMILY#Adhesin family signature.

Length = 309

Score = 249 bits (636), Expect = 5e-81
Identities = 81/317 (25%), Positives = 151/317 (47%), Gaps = 19/317 (5%)

Query: 1 MKRLIGILAMLVLAGMLTACGASGKAEDSKEKLSVMTTFYPMYDFTKAIVGDEGEVELLI 60
MK+L +L + + A +L AC + K S +KL V+ T + D TK I GD+ ++ ++
Sbjct: 1 MKKLGTLLVLFLSAIILVACASGKKDTTSGQKLKVVATNSIIADITKNIAGDKIDLHSIV 60

Query: 61 PAGTDSHDYEPSAKDMAKIQDTDIFVYNDENMET-----WVPAIQKTLQEGNVHTIKATE 115
P G D H+YEP +D+ K + D+ YN N+ET + ++ + N ++
Sbjct: 61 PIGQDPHEYEPLPEDVKKTSEADLIFYNGINLETGGNAWFTKLVENAKKTENKDYFAVSD 120

Query: 116 GMLLLPGSEEGHDHDHEHGEEGHTHELDPHVWLAPSLAIKQVANIRDQLIEAYPEKQEVW 175
G+ ++ + DPH WL I NI QL P +E +
Sbjct: 121 GVDVIYLEGQNEKGKE-----------DPHAWLNLENGIIFAKNIAKQLSAKDPNNKEFY 169

Query: 176 TKNAAAYTEKLQALHQLYQETFKQ--AKQRSFVTQHAAFNYLALEYGLNQVSIAGLSSSE 233
KN YT+KL L + ++ F + A+++ VT AF Y + YG+ I +++ E
Sbjct: 170 EKNLKEYTDKLDKLDKESKDKFNKIPAEKKLIVTSEGAFKYFSKAYGVPSAYIWEINTEE 229

Query: 234 EPSAARIAELKHFVKEHGINYIYFEENAKDSIARTLANEAGVSLEVLNPLEGLTNEQIEN 293
E + +I L +++ + ++ E + D +T++ + + + + + EQ +
Sbjct: 230 EGTPEQIKTLVEKLRQTKVPSLFVESSVDDRPMKTVSQDTNIPIYAQIFTDSIA-EQGKE 288

Query: 294 GENYLSIMEANLEALKK 310
G++Y S+M+ NL+ + +
Sbjct: 289 GDSYYSMMKYNLDKIAE 305


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS01910PF046471332e-41 Accessory gene regulator B
		>PF04647#Accessory gene regulator B

Length = 212

Score = 133 bits (336), Expect = 2e-41
Identities = 39/182 (21%), Positives = 78/182 (42%), Gaps = 6/182 (3%)

Query: 12 ALFSGDKSEEDMVYVQVKFALEVLLNNLGKLAVVLVFSLVTGSWAETGITFLSYICIRRY 71
A + D+S+ ++++ +EV L + ++ ++L+ + V G E LS RR+
Sbjct: 9 AEWLVDRSDYPFNQEEIRYGIEVFLGTVFQIIIILLVAFVIGLAKEVAFCLLSAAVYRRF 68

Query: 72 AYGLHSDSEFVCLLWTLLYLWGVPLVMKHLQLTISFPMMVFLLISC-FLLLLRYGSRGTA 130
+ G H + + C L +LL ++ V + HL F +++ + L LL
Sbjct: 69 SGGAHCEKYYRCTLTSLL-VFNVLAYIAHLIDPAYFQLLILIAFITSLLALLFLVPVDNP 127

Query: 131 INPI-EPEKRPPLLKKAISMFLIFSLITLFFSASYFSTYLL---LGIVLEIATLLPITNY 186
N I E+R L K + ++ ++ Y L LG++ + TL + +
Sbjct: 128 RNLISNTEQRKTLKLKTSMVLMVLFGGSIGAYRLYTHQIALAILLGVLWQTFTLTALGHK 187

Query: 187 LM 188
+
Sbjct: 188 FI 189


24EFAU085_RS02090EFAU085_RS02125N        Y        NPathogenicity Island (unbiased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
EFAU085_RS02090-211-0.137697peptidoglycan-binding protein LysM
EFAU085_RS02095-211-0.243894amino acid permease
EFAU085_RS02100-115-0.272656manganese transporter
EFAU085_RS02105-112-0.126673membrane protein
EFAU085_RS02110-1100.545706manganese ABC transporter substrate-binding
EFAU085_RS02115-1101.202379hypothetical protein
EFAU085_RS02120-191.683823iron-sulfur cluster binding protein, putative
EFAU085_RS021250111.793419peptidase M23B
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS02090IGASERPTASE320.005 IgA-specific serine endopeptidase (S6) signature.
		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.

Length = 1541

Score = 31.6 bits (71), Expect = 0.005
Identities = 38/212 (17%), Positives = 67/212 (31%), Gaps = 24/212 (11%)

Query: 51 GKNSSEAKSTTITETTT-----KKTETKQTSESSTKTKETQTSEEKTANGLPEQLQAIVN 105
+ + EAKS T T +ETK+T + TK T EEK + +
Sbjct: 1066 REVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEV--- 1122

Query: 106 DYSKKIEEKTPALIEEYQTEIQGNQEGIAGLSAVANQKARELQAISDEGIRKLRAAYQAA 165
K + +P + + Q + + + +D Q A
Sbjct: 1123 --PKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTE--------QPA 1172

Query: 166 ENKDGVDLDTLINQLSANYTNHVAKISDIYLQTSASLQAESTSTQDTTSSDSETAESVEA 225
+ + + N N V + + + S S+ + + SV
Sbjct: 1173 KETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPH 1232

Query: 226 SEMQARTTQD------TTDSSETNTNSATSQA 251
+ A T+ + D + TNTN+ S A
Sbjct: 1233 NVEPATTSSNDRSTVALCDLTSTNTNAVLSDA 1264



Score = 28.9 bits (64), Expect = 0.030
Identities = 33/198 (16%), Positives = 69/198 (34%), Gaps = 12/198 (6%)

Query: 51 GKNSSEAKSTTITETTTKKTETKQTSESSTKTKETQTSEEKTANGLPEQLQA-IVNDYSK 109
G + E ++T ET T + E K E T++TQ + T+ P+Q Q+ V ++
Sbjct: 1089 GSETKETQTTETKETATVEKEEKAKVE----TEKTQEVPKVTSQVSPKQEQSETVQPQAE 1144

Query: 110 KIEEKTPALIEEYQTEIQGNQEGIAGLSAVANQKARELQAISDEGIRKLRAAYQAAENKD 169
E P + + + + + + + + EN
Sbjct: 1145 PARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVT-ESTTVNTGNSVVENPENTT 1203

Query: 170 GVDLDTLINQLSANYTNHVAKIS------DIYLQTSASLQAESTSTQDTTSSDSETAESV 223
+N S+N + + S ++ T++S + + D TS+++ S
Sbjct: 1204 PATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTNAVLSD 1263

Query: 224 EASEMQARTTQDTTDSSE 241
++ Q S+
Sbjct: 1264 ARAKAQFVALNVGKAVSQ 1281


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS02095STREPTOPAIN300.013 Streptopain (C10) cysteine protease family signature.
		>STREPTOPAIN#Streptopain (C10) cysteine protease family signature.

Length = 398

Score = 30.4 bits (68), Expect = 0.013
Identities = 10/57 (17%), Positives = 20/57 (35%), Gaps = 2/57 (3%)

Query: 59 RALGEMLYVDPSTGSFANYASEYIHPVAGYLTAWSNIFQYIVVGIS--EVIAVGSYM 113
+ L + Y S + N+ ++ W+NI S + +A+ M
Sbjct: 209 KGLKDYTYTLSSNNPYFNHPKNLFAAISTRQYNWNNILPTYSGRESNVQKMAISELM 265


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS02110adhesinb366e-129 Adhesin B signature.
		>adhesinb#Adhesin B signature.

Length = 310

Score = 366 bits (940), Expect = e-129
Identities = 178/310 (57%), Positives = 234/310 (75%), Gaps = 3/310 (0%)

Query: 4 KKSLFLILAVSFLVLAGCGKQASDQADEGSKEKLSVVATNSILADMAKEVGTDQIDIHSI 63
K ++L ++F+ LA C Q S SK L+VVATNSI+AD+ K + D+I++HSI
Sbjct: 3 KCRFLVLLLLAFVGLAACSSQKSSTETGSSK--LNVVATNSIIADITKNIAGDKINLHSI 60

Query: 64 VPVGTDPHEYEVLPEDIKKASDADVILYNGLNLETG-NSWFDNLMETAKKEEGKDYFAVS 122
VPVG DPHEYE LPED+KK S AD+I YNG+NLETG N+WF L+E AKK+E KDY+AVS
Sbjct: 61 VPVGQDPHEYEPLPEDVKKTSQADLIFYNGINLETGGNAWFTKLVENAKKKENKDYYAVS 120

Query: 123 KNVEPLYLTSGEEHTKADPHAWLDLSNGIKYVEEIARIFSEKDAENATLYKKNAEAYVEK 182
+ V+ +YL E K DPHAWL+L NGI Y + IA+ SEKD N Y+KN +AYVEK
Sbjct: 121 EGVDVIYLEGQSEKGKEDPHAWLNLENGIIYAQNIAKRLSEKDPANKETYEKNLKAYVEK 180

Query: 183 LKELDTQAKESFASIEENKKLLVTSEGAFKYFSRAYDLPAAYIWEINTESQGTPDQMKAI 242
L LD +AKE F +I KK++VTSEG FKYFS+AY++P+AYIWEINTE +GTPDQ+K +
Sbjct: 181 LSALDKEAKEKFNNIPGEKKMIVTSEGCFKYFSKAYNVPSAYIWEINTEEEGTPDQIKTL 240

Query: 243 IDQIRAKEVPVLFVETSVDSRSMERVAKETGLKIYDKLFTDSIAKEGEQGDSYYQMMKWN 302
++++R +VP LFVE+SVD R M+ V+K+T + IY K+FTDS+A++GE+GDSYY MMK+N
Sbjct: 241 VEKLRKTKVPSLFVESSVDDRPMKTVSKDTNIPIYAKIFTDSVAEKGEEGDSYYSMMKYN 300

Query: 303 IETIHEGLSQ 312
+E I EGLS+
Sbjct: 301 LEKIAEGLSK 310


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS02125CHLAMIDIAOM6280.027 Chlamydia cysteine-rich outer membrane protein 6 si...
		>CHLAMIDIAOM6#Chlamydia cysteine-rich outer membrane protein 6

signature.
Length = 547

Score = 28.1 bits (62), Expect = 0.027
Identities = 15/48 (31%), Positives = 25/48 (52%)

Query: 86 ATTENKTTENTASTTETATQEHTYVAPVETVEVAPAAPAAATAPTSSS 133
+ + K +NT+ ++ A + H+ PV+ EVAP + AT P S
Sbjct: 40 SLADTKAKDNTSHKSKKARKNHSKETPVDRKEVAPVHESKATGPKQDS 87


25EFAU085_RS02270EFAU085_RS02320N        Y        NPathogenicity Island (unbiased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
EFAU085_RS02270-1110.780924transcriptional regulator
EFAU085_RS02275-1121.082815sensor histidine kinase
EFAU085_RS02280-1121.430743glucose transporter GlcU
EFAU085_RS022851132.045955amino acid permease
EFAU085_RS022903141.243972tellurite resistance protein
EFAU085_RS02295-1121.340601hypothetical protein
EFAU085_RS02300-2121.456470ADP-ribose pyrophosphatase
EFAU085_RS02305-3111.399328hypothetical protein
EFAU085_RS02310-3111.5332505'-methylthioadenosine/S-adenosylhomocysteine
EFAU085_RS02315-3111.490135isochorismatase
EFAU085_RS02320-2121.330585peptidase
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS02270HTHFIS711e-16 FIS bacterial regulatory protein HTH signature.
		>HTHFIS#FIS bacterial regulatory protein HTH signature.

Length = 484

Score = 71.4 bits (175), Expect = 1e-16
Identities = 31/136 (22%), Positives = 66/136 (48%), Gaps = 2/136 (1%)

Query: 2 AKIMVVEDEEIIRQLIMEELEKWQFETFGTTDFNQVFSDFEREEPQLVLLDINLPVLDGY 61
A I+V +D+ IR ++ + L + ++ T++ ++ + LV+ D+ +P + +
Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63

Query: 62 YWCQKIREV-SKVPIIFISSRNTNMDMIMAMNMGADDFVTKHFQIDVLIAKI-NALLRRS 119
+I++ +P++ +S++NT M I A GA D++ K F + LI I AL
Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123

Query: 120 YNYTELSSEMMSHNGI 135
++L + +
Sbjct: 124 RRPSKLEDDSQDGMPL 139


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS02275PF06580310.005 Sensor histidine kinase
		>PF06580#Sensor histidine kinase

Length = 349

Score = 31.4 bits (71), Expect = 0.005
Identities = 26/119 (21%), Positives = 43/119 (36%), Gaps = 31/119 (26%)

Query: 222 LTDAKWIAFIFNQLLSNAIKY----TPDHGNIIVSIEKEAQGVSLSVKDSGIGIPAEDLK 277
+ D + + L+ N IK+ P G I++ K+ V+L V++
Sbjct: 250 IMDVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVEN----------- 298

Query: 278 RIFDKGFTGRNGRLSKTHSTGLGLYLAKNLAEKLGI------HLTAESTEGKGTTMTLF 330
TG + STG GL N+ E+L + + +GK M L
Sbjct: 299 -------TGSLALKNTKESTGTGLQ---NVRERLQMLYGTEAQIKLSEKQGKVNAMVLI 347


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS02290INVEPROTEIN290.032 Salmonella/Shigella invasion protein E (InvE) signat...
		>INVEPROTEIN#Salmonella/Shigella invasion protein E (InvE)

signature.
Length = 372

Score = 28.9 bits (64), Expect = 0.032
Identities = 21/94 (22%), Positives = 36/94 (38%)

Query: 34 TTSQQAEIDQLQEQQTAARLIDKLPAERQEQAKQLAAKIDANDAQSVISYGSAAQAKLSE 93
T +QQAEI Q E + + K E + LA + D + S S + ++ E
Sbjct: 28 TDAQQAEIQQAAEDSSPGAEVQKFVQSTDEMSAALAQFRNRRDYEKKSSNLSNSFERVLE 87

Query: 94 FSQSMLNHVQAQDIGPVGDSLTELMYRLQEANPD 127
+ I G +L + + + + PD
Sbjct: 88 DEALPKAKQILKLISVHGGALEDFLRQARSLFPD 121


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS02295SECFTRNLCASE290.013 Bacterial translocase SecF protein signature.
		>SECFTRNLCASE#Bacterial translocase SecF protein signature.

Length = 333

Score = 29.0 bits (65), Expect = 0.013
Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 11/56 (19%)

Query: 9 LLALVLLFLFVRNNSFSFVLGLLLIGVVL----------VLWGLFGSRRKKGKQEE 54
LLALV + ++ + FV ++ GV + G R K K++
Sbjct: 265 LLALVPMLIWGGDVIRGFVF-AMVWGVFTGTYSSVYVAKNIVLFIGLDRNKEKKDP 319


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS02305IGASERPTASE270.011 IgA-specific serine endopeptidase (S6) signature.
		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.

Length = 1541

Score = 27.0 bits (59), Expect = 0.011
Identities = 12/59 (20%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 14 KRQQAQASESLKKQRKA--ETAYQQEEKKIASFYRKESKKNKPITKTRISEREKTTKWN 70
+ + + + +++K+ KA ET QE K+ S + ++++ + RE N
Sbjct: 1096 QTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVN 1154


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS02315ISCHRISMTASE501e-09 Isochorismatase signature.
		>ISCHRISMTASE#Isochorismatase signature.

Length = 312

Score = 49.6 bits (118), Expect = 1e-09
Identities = 24/79 (30%), Positives = 35/79 (44%)

Query: 102 KRHYSAFSGTDLDIRLRERQITDIYLTGVCTDICVLHTAVDAYNLGYKLHIFKDAVASFD 161
K YSAF T+L +R+ + +TG+ I L TA +A+ K DAVA F
Sbjct: 123 KWRYSAFKRTNLLEMMRKEGRDQLIITGIYAHIGCLVTACEAFMEDIKAFFVGDAVADFS 182

Query: 162 PVGHEWALRHFESTLGAEI 180
H+ AL + +
Sbjct: 183 LEKHQMALEYAAGRCAFTV 201


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS02320GPOSANCHOR320.018 Gram-positive coccus surface protein anchor signature.
		>GPOSANCHOR#Gram-positive coccus surface protein anchor signature.

Length = 539

Score = 31.6 bits (71), Expect = 0.018
Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 11/81 (13%)

Query: 1012 KPERENP-GNESPNGKPNGKPSHPDRTAKESEKNGTQG----------LPKTGEFNNPLL 1060
K +++P+ KP K A ++ Q LP TGE NP
Sbjct: 457 KLRAGKASDSQTPDAKPGNKAVPGKGQAPQAGTKPNQNKAPMKETKRQLPSTGETANPFF 516

Query: 1061 ALAGGILLIGVVVYVMKQRKK 1081
A ++ V + +RK+
Sbjct: 517 TAAALTVMATAGVAAVVKRKE 537


26EFAU085_RS04865EFAU085_RS04905N        Y        NPathogenicity Island (unbiased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
EFAU085_RS04865-114-1.564183GNAT family acetyltransferase
EFAU085_RS04870-113-0.709374permease
EFAU085_RS04875016-0.368245hemolysin
EFAU085_RS048800210.297142peptide chain release factor 3
EFAU085_RS048850200.262877hypothetical protein
EFAU085_RS04890-1160.196449hypothetical protein
EFAU085_RS04895-1160.272081ATP-dependent Clp protease ATP-binding protein
EFAU085_RS04900014-0.143790phosphocarrier protein HPr
EFAU085_RS04905-112-0.732411phosphoenolpyruvate-protein phosphotransferase
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS04865SACTRNSFRASE378e-06 Streptothricin acetyltransferase signature.
		>SACTRNSFRASE#Streptothricin acetyltransferase signature.

Length = 173

Score = 36.8 bits (85), Expect = 8e-06
Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 5/101 (4%)

Query: 40 DEAHCIHFVLYSDKKEPQGTVRLLPLENGKMKLQRMAILSEYRHQGLGKILIEEAENFAK 99
+E F+ Y + G +++ NG ++ +A+ +YR +G+G L+ +A +AK
Sbjct: 61 EEEGKAAFLYYLEN-NCIGRIKIRSNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAK 119

Query: 100 NQGYNTILLGAQST---AETFYEKLGYTAYG-DPFEDAGMP 136
+ ++L Q A FY K + D + P
Sbjct: 120 ENHFCGLMLETQDINISACHFYAKHHFIIGAVDTMLYSNFP 160


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS04870BCTERIALGSPF290.025 Bacterial general secretion pathway protein F signa...
		>BCTERIALGSPF#Bacterial general secretion pathway protein F

signature.
Length = 408

Score = 29.4 bits (66), Expect = 0.025
Identities = 14/52 (26%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 66 MKAKIKRIWAVAIVLLLLVAAIIWILLS-VIPSLVQQISSLASNMPDFIKQV 116
M+++I++ VL ++ A++ ILLS V+P +V+Q + +P + +
Sbjct: 165 MRSRIQQAMIYPCVLTVVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVL 216


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS04880TCRTETOQM2275e-69 Tetracycline resistance protein TetO/TetQ/TetM family ...
		>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family

signature.
Length = 639

Score = 227 bits (580), Expect = 5e-69
Identities = 113/457 (24%), Positives = 209/457 (45%), Gaps = 44/457 (9%)

Query: 12 NRRTFAIISHPDAGKTTITEQLLLFGGAIRQAGTVKGKKTGNFAKSDWMEIEKQRGISVT 71
+++H DAGKTT+TE LL GAI + G+V T ++D +E+QRGI++
Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTT----RTDNTLLERQRGITIQ 57

Query: 72 SSVMQFDYQGKRVNILDTPGHEDFSEDTYRTLMAVDSAVMVIDSAKGIEAQTKKLFQVVK 131
+ + F ++ +VNI+DTPGH DF + YR+L +D A+++I + G++AQT+ LF ++
Sbjct: 58 TGITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALR 117

Query: 132 KRGIPIFTFINKLDRDGREPLELLEELEELLDIESYPMNWPIGMGKGLEGLYDIYHNRVE 191
K GIP FINK+D++G + + ++++E L E + + + V
Sbjct: 118 KMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIK----------QKVELYPNMCVT 167

Query: 192 FYRPENYQDERLVELDEDGLLPENHPLTENSLYEQVLEEVELIKEAGDAFNQEKIARGDQ 251
+ E+ Q + ++E ++D L E+ + L + +
Sbjct: 168 NF-TESEQWDTVIEGNDD-------------LLEKYMSGKSLEALELEQEESIRFHNCSL 213

Query: 252 TPVFFGSALTNFGVQTFLETFVELAPAPYGHKTQDDQMVSPYEEEFSGFVFKIQANMNPA 311
PV+ GSA N G+ +E + T Q E G VFKI
Sbjct: 214 FPVYHGSAKNNIGIDNLIEVITNKFYSS----THRGQ------SELCGKVFKI---EYSE 260

Query: 312 HRDRIAFVRICSGTFERGMDVWLERTNKKLKLSNVTQFMADSRENVEKAVAGDIIGVYDT 371
R R+A++R+ SG D +K+K++ + + ++KA +G+I+ + +
Sbjct: 261 KRQRLAYIRLYSGVLHLR-DSVRISEKEKIKITEMYTSINGELCKIDKAYSGEIVILQNE 319

Query: 372 GNYQIGDTLFEGKLKVAYEELPSFTPELFMKVTAKNVMKQKSFHKGIYQLVQEG-AIQLY 430
++ L + KL E + + P L V +++ + ++ ++ Y
Sbjct: 320 F-LKLNSVLGDTKLLPQRERIENPLPLLQTTVEPSKPQQREMLLDALLEISDSDPLLRYY 378

Query: 431 KTYLTEEYIIGAVGQLQFEVFQYRMLNEYNAEVIMSP 467
T E I+ +G++Q EV + +Y+ E+ +
Sbjct: 379 VDSATHEIILSFLGKVQMEVTCALLQEKYHVEIEIKE 415


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS04895HTHFIS310.013 FIS bacterial regulatory protein HTH signature.
		>HTHFIS#FIS bacterial regulatory protein HTH signature.

Length = 484

Score = 31.3 bits (71), Expect = 0.013
Identities = 40/157 (25%), Positives = 61/157 (38%), Gaps = 31/157 (19%)

Query: 113 QARQGDIDPVIGRDDEIKRVIEILNRRTKNN-PVLI-GEPGVGKTAVVEGLAQ------- 163
+ D P++GR ++ + +L R + + ++I GE G GK V L
Sbjct: 130 EDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHDYGKRRNG 189

Query: 164 ---KIVDGDVPQKLMDKEVIRLDVVSLVQGTGIRGQFEERMQKLIEEIRQAENVILFIDE 220
I +P+ L++ E + G +G F + QAE LF+DE
Sbjct: 190 PFVAINMAAIPRDLIESE---------LFGHE-KGAFTGAQTRSTGRFEQAEGGTLFLDE 239

Query: 221 VHEIVGAGSAGDGNMDAGNILKPALARGELQMVGATT 257
+ GD MDA L L +GE VG T
Sbjct: 240 I---------GDMPMDAQTRLLRVLQQGEYTTVGGRT 267


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS04905PHPHTRNFRASE8000.0 Phosphoenolpyruvate-protein phosphotransferase sign...
		>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase

signature.
Length = 572

Score = 800 bits (2068), Expect = 0.0
Identities = 353/575 (61%), Positives = 455/575 (79%), Gaps = 4/575 (0%)

Query: 1 MVEMLKGIAASDGVAVAKAYLLVQPDLTFSKATVEDTAAEEARLDAALAKSTEELQQIRE 60
M + GIAAS GVA+AKA++ ++P++ K ++ D + E +L AAL KS EEL+ I++
Sbjct: 1 MHHKITGIAASSGVAIAKAFIHLEPNVDIEKTSITDVSTEIEKLTAALEKSKEELRAIKD 60

Query: 61 KAAQSLGEAEAQVFDAHLMVLSDPEMVGQIKQNIKDNSVNAESALKEVTDMYIGMFEAME 120
+ S+G +A++F AHL+VL DPE+V IK I++ +NAE ALKEV+DM++ MFE+M
Sbjct: 61 QTEASMGADKAEIFAAHLLVLDDPELVDGIKGKIENEQMNAEYALKEVSDMFVSMFESM- 119

Query: 121 DNAYMQERAADIRDVAKRILAHLLGVTLPNPSMINEEVVVVAHDLTPSDTAQLDRNFVKA 180
DN YM+ERAADIRDV+KR+L HL+GV + + I EE V++A DLTPSDTAQL++ FVK
Sbjct: 120 DNEYMKERAADIRDVSKRVLGHLIGVETGSLATIAEETVIIAEDLTPSDTAQLNKQFVKG 179

Query: 181 FVTDIGGRTSHSAIMARSLEIPAIVGTKEITAKVKEGDILAVNGIEGDVIIDPTDEQKAE 240
F TDIGGRTSHSAIM+RSLEIPA+VGTKE+T K++ GD++ V+GIEG VI++PT+E+
Sbjct: 180 FATDIGGRTSHSAIMSRSLEIPAVVGTKEVTEKIQHGDMVIVDGIEGIVIVNPTEEEVKA 239

Query: 241 FEKAGADYAAQKAEWEKLKNAETVTADGKHFELAANIGTPKDLVGVHNNGGEAVGLYRTE 300
+E+ A + QK EW KL + T DG H ELAANIGTPKD+ GV NGGE +GLYRTE
Sbjct: 240 YEEKRAAFEKQKQEWAKLVGEPSTTKDGAHVELAANIGTPKDVDGVLANGGEGIGLYRTE 299

Query: 301 FLYMDSPDFPTEDDQYEAYKAVLEGMEGKPVVVRTMDIGGDKELPYLQLPHEMNPFLGYR 360
FLYMD PTE++Q+EAYK V++ M+GKPVV+RT+DIGGDKEL YLQLP E+NPFLG+R
Sbjct: 300 FLYMDRDQLPTEEEQFEAYKEVVQRMDGKPVVIRTLDIGGDKELSYLQLPKELNPFLGFR 359

Query: 361 ALRISLSEQGDEMFRTQMRALLRASVHGNLRIMFPMVATLKEFRAAKAIFEEEKQKLISE 420
A+R+ L +Q ++FRTQ+RALLRAS +GNL++MFPM+ATL+E R AKAI +EEK KL+SE
Sbjct: 360 AIRLCLEKQ--DIFRTQLRALLRASTYGNLKVMFPMIATLEELRQAKAIMQEEKDKLLSE 417

Query: 421 GKEVSDTIQVGIMIEIPAAAVLADKFAKEVDFFSVGTNDLIQYTMAADRMNERVSYLYQP 480
G +VSD+I+VGIM+EIP+ AV A+ FAKEVDFFS+GTNDLIQYTMAADRMNERVSYLYQP
Sbjct: 418 GVDVSDSIEVGIMVEIPSTAVAANLFAKEVDFFSIGTNDLIQYTMAADRMNERVSYLYQP 477

Query: 481 YNPSILRLIKNVIDAAHAEGKWAGMCGEMAGDQTAVPLLVGMGLDEFSMSATSILKTRSL 540
Y+P+ILRL+ VI AAH+EGKW GMCGEMAGD+ A+PLL+G+GLDEFSMSATSIL RS
Sbjct: 478 YHPAILRLVDMVIKAAHSEGKWVGMCGEMAGDEVAIPLLLGLGLDEFSMSATSILPARSQ 537

Query: 541 MKRLDTAKMAELADRALKECDTMEEVVELVHEYVK 575
+ +L ++ A +AL DT EEV +LV +
Sbjct: 538 LLKLSKEELKPFAQKAL-MLDTAEEVEQLVKKTYL 571


27EFAU085_RS06960EFAU085_RS06995N        Y        NPathogenicity Island (unbiased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
EFAU085_RS06960-2110.656737fibronectin-binding protein
EFAU085_RS06965-2131.042101hypothetical protein
EFAU085_RS06970-1131.584173hypothetical protein
EFAU085_RS069750121.804752ABC transporter substrate-binding protein
EFAU085_RS06980-1141.188548branched-chain amino acid ABC transporter
EFAU085_RS069850130.453909phosphonate ABC transporter ATP-binding protein
EFAU085_RS06990113-0.170246shikimate dehydrogenase
EFAU085_RS06995116-0.687615Cro/Cl family transcriptional regulator
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS06960FbpA_PF058336860.0 Fibronectin-binding protein
		>FbpA_PF05833#Fibronectin-binding protein

Length = 577

Score = 686 bits (1771), Expect = 0.0
Identities = 222/575 (38%), Positives = 334/575 (58%), Gaps = 13/575 (2%)

Query: 1 MSFDGVFTHAMVNELRETLLSGRISKIHQPYENEIVLVIRSRGKNHRLLLSAHPSYARVQ 60
M+ DG+F +++++EL+ T+++G+I K++QP ++EI+L IR + +LL+S+ +Y R+
Sbjct: 1 MALDGIFLYSIIDELKNTIINGKIDKVNQPEKDEIILNIRKGRLSFKLLISSSSNYPRIH 60

Query: 61 ITQIDYQNPDNPPNFVMMLRKYLDGAILEDIEQIENDRVIHFHFAKRNELGDLQNIILIV 120
+T + NP P F M+LRKY+ A + DI QI DR++ F +ELG LI+
Sbjct: 61 LTDLTKPNPIKAPMFCMVLRKYISNAKIVDIHQINQDRIVVIDFESTDELGFNSIYSLII 120

Query: 121 ELMGRHSTIVLVNRETGKILDAIKHIGSSQNTYRSLLPGVEYVAPPKQEVLNPFSSEKEK 180
E+MGRHS + L+ + I+D+IKHI NTYRS+ PG+EYV PPK LNPF +
Sbjct: 121 EIMGRHSNMTLIRKRDNIIMDSIKHITPDINTYRSIYPGIEYVYPPKSPKLNPFDFSYDM 180

Query: 181 IFQRLSQT--ELDPKAIQRQFQGIGFDIAQELTKRL--------LERPNEKMVVWDEFFS 230
I + +L+ + F G+ ++ E+ RL L E + V + F
Sbjct: 181 IENFTKENSLQLNDNIFSKIFTGVSKTLSSEICFRLKNNSIDLSLSNLKEIVEVCKDLFK 240

Query: 231 AISHQPIPTFYETENKDFFTPIAYQVLSEQASAVTAYPTLSQLLDSYYHEKAEKDRAKQQ 290
I T+N F ++S++ Y + S+LL+++Y+ K + DR K +
Sbjct: 241 EIQSNKFEFNCYTKNNSFVGFYCLNLMSKEDYKKIQYDSSSKLLENFYYAKDKSDRLKSK 300

Query: 291 GGELIRKIENELKRNKNKLKKREQTLKESENAENYRRNGELLTTFLTQVPRGAKEVVLPN 350
+L + + N + R K K TLK+ E+ + ++ GELLT + + +G + L N
Sbjct: 301 SSDLQKIVMNNINRCTKKDKILNNTLKKCEDKDIFKLYGELLTANIYALKKGLSHIELAN 360

Query: 351 YYEED-RPIKIALDPALTPNQNAQKYFHRYQKLKNAVKLIGEQIQEAKDEIQYLESVLSQ 409
YY E+ +KI LD TP+QN Q Y+ +Y KLK + + EQ+ + ++E+ YL SVL+
Sbjct: 361 YYSENYDTVKITLDENKTPSQNVQSYYKKYNKLKKSEEAANEQLLQNEEELNYLYSVLTN 420

Query: 410 LEIAGPMD-IEAIKEELTSEGYLKKKNLKKQKRKKPSQPDQYFSSDGTLILVGKNNLQND 468
+ A D IE IK+EL GY+K K + K K+ K S+P + S DG I VGKNN+QND
Sbjct: 421 INNADNYDEIEEIKKELIETGYIKFKKIYKSKKSKTSKPMHFISKDGIDIYVGKNNIQND 480

Query: 469 QLTMKTAKKTDYWLHAKNIPGSHVIIKSDK-PSDETITEAAELAAYFSKYRYSAQVPVDL 527
LT+K A K D W H KNIPGSHVI+K+ + T+ EAA LAAY+SK + S+ VPVD
Sbjct: 481 YLTLKFANKHDIWFHTKNIPGSHVIVKNIMDIPESTLLEAANLAAYYSKSQNSSNVPVDY 540

Query: 528 VQVKHIRKPNGAKPGYVIYENQKTIIVTPEEEKIT 562
+VK+++KPNGAKPG VIY +TI VTP +
Sbjct: 541 TEVKNVKKPNGAKPGMVIYSTNQTIYVTPTNPNLK 575


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS06975PHPHTRNFRASE280.047 Phosphoenolpyruvate-protein phosphotransferase sign...
		>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase

signature.
Length = 572

Score = 28.2 bits (63), Expect = 0.047
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 3/47 (6%)

Query: 164 TNEIAQTVQVMSR---QVDFIYVPLDNTIANAMQTVVKEANKANIPV 207
TN++ Q R +V ++Y P I + V+K A+ V
Sbjct: 454 TNDLIQYTMAADRMNERVSYLYQPYHPAILRLVDMVIKAAHSEGKWV 500


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS06985PF05272300.008 Virulence-associated E family protein
		>PF05272#Virulence-associated E family protein

Length = 892

Score = 30.4 bits (68), Expect = 0.008
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 4/46 (8%)

Query: 36 DFITVL-GGNGAGKSTLFNTIAGTLQLSQGSISFKDQLITKDSEEK 80
D+ VL G G GKSTL NT+ G S KDS E+
Sbjct: 596 DYSVVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTG---KDSYEQ 638


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS06995PF04647280.049 Accessory gene regulator B
		>PF04647#Accessory gene regulator B

Length = 212

Score = 28.2 bits (63), Expect = 0.049
Identities = 6/34 (17%), Positives = 14/34 (41%), Gaps = 2/34 (5%)

Query: 84 KNKPLKPRRKRSWKKIILSILLVLILYSGISFFI 117
+ +R K+ S++L+++ G S
Sbjct: 127 PRNLISNTEQRKTLKLKTSMVLMVLF--GGSIGA 158


28EFAU085_RS08780EFAU085_RS08835N        Y        NPathogenicity Island (unbiased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
EFAU085_RS087800150.435299carbamate kinase
EFAU085_RS08785015-0.130649ornithine carbamoyltransferase
EFAU085_RS087900120.030245arginine deiminase
EFAU085_RS087950110.126363cyclic nucleotide-binding protein
EFAU085_RS088000120.958909tRNA threonylcarbamoyladenosine modification
EFAU085_RS088050120.685087alanine acetyltransferase
EFAU085_RS088100120.909066alanine acetyltransferase
EFAU085_RS088150131.041856universal bacterial protein YeaZ
EFAU085_RS088202130.835980LacI family transcriptional regulator
EFAU085_RS088250120.437543peptidase S24
EFAU085_RS088300120.523132UDP-glucose 4-epimerase
EFAU085_RS088350140.097522hypothetical protein
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS08780CARBMTKINASE409e-147 Bacterial carbamate kinase signature.
		>CARBMTKINASE#Bacterial carbamate kinase signature.

Length = 314

Score = 409 bits (1053), Expect = e-147
Identities = 138/314 (43%), Positives = 203/314 (64%), Gaps = 5/314 (1%)

Query: 3 KRKVVVALGGNAIL--STDASAKAQQEALMETAKYLVKFIEQGDELIISHGNGPQVGNLL 60
++VV+ALGGNA+ S + + + +TA+ + + I +G E++I+HGNGPQVG+LL
Sbjct: 2 GKRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLL 61

Query: 61 IQQQAADSE-KTPAMPLDTCVAMTEGSIGYWLQNAMGEVLKEKGIDKDVVSLVTQVIVDE 119
+ A + PA P+D AM++G IGY +Q A+ L+++G++K VV+++TQ IVD+
Sbjct: 62 LHMDAGQATYGIPAQPMDVAGAMSQGWIGYMIQQALKNELRKRGMEKKVVTIITQTIVDK 121

Query: 120 NDPSFKNPSKPVGPFYTEEEAKEQMNADSTVTFKEDAGRGWRKVVASPKPISIKEARVIE 179
NDP+F+NP+KPVGPFY EE AK + KED+GRGWR+VV SP P EA I+
Sbjct: 122 NDPAFQNPTKPVGPFYDEETAKRLAREKGWI-VKEDSGRGWRRVVPSPDPKGHVEAETIK 180

Query: 180 TLVDQGVITVSVGGGGIPVVETATGLEGREAVIDKDFASEKLAEIIDADLLIVLTGVDNV 239
LV++GVI ++ GGGG+PV+ ++G EAVIDKD A EKLAE ++AD+ ++LT V+
Sbjct: 181 KLVERGVIVIASGGGGVPVILEDGEIKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNGA 240

Query: 240 YVNYQKPDQKKLETVTVSEMKQYIDEKQFAPGSMLPKVEAAIAFVEAKPNAKAIITSLEN 299
+ Y ++ L V V E+++Y +E F GSM PKV AAI F+E +AII LE
Sbjct: 241 ALYYGTEKEQWLREVKVEELRKYYEEGHFKAGSMGPKVLAAIRFIEW-GGERAIIAHLEK 299

Query: 300 IENLLASEEGTIIV 313
L + GT ++
Sbjct: 300 AVEALEGKTGTQVL 313


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS08790ARGDEIMINASE5250.0 Bacterial arginine deiminase signature.
		>ARGDEIMINASE#Bacterial arginine deiminase signature.

Length = 409

Score = 525 bits (1353), Expect = 0.0
Identities = 184/410 (44%), Positives = 271/410 (66%), Gaps = 10/410 (2%)

Query: 3 KPIHVFSEIGKLKTVLLKRPGQEVENLTPDIMDRLLFDDIPYLPIAQEEHDNFAKTLQNE 62
PI++FSEIG+LK VLL RPG+E+ENLTP IM LFDDIPYL +A++EH+ FA L+N
Sbjct: 6 NPINIFSEIGRLKKVLLHRPGEELENLTPFIMKNFLFDDIPYLEVARQEHEVFASILKNN 65

Query: 63 GVETLYLEKLAAEAI-DAGNVKEQFLNKMLDESHIASNAVREGLHEFLLSMETQEMVDKI 121
VE Y+E L +E + + ++ +F+++ + E+ I ++ L ++ S+ M+ K+
Sbjct: 66 LVEIEYIEDLISEVLVSSVALENKFISQFILEAEIKTDFTINLLKDYFSSLTIDNMISKM 125

Query: 122 MAGVRTKDIEVRSSSLYDLSADDDYPFYMDPMPNLYFTRDPSASMGNGMTVNKMTFEARR 181
++GV T++++ +SSL DL + F +DPMPN+ FTRDP AS+GNG+T+NKM + R+
Sbjct: 126 ISGVVTEELKNYTSSLDDL-VNGANLFIIDPMPNVLFTRDPFASIGNGVTINKMFTKVRQ 184

Query: 182 RESMFTEYILKHHPRFANKGIEVWLDRENPDHIEGGDELILSDKVVAVGISQRTNAKALE 241
RE++F EYI K+HP + + + +WL+R +EGGDEL+L+ ++ +GIS+RT AK++E
Sbjct: 185 RETIFAEYIFKYHPVYK-ENVPIWLNRWEEASLEGGDELVLNKGLLVIGISERTEAKSVE 243

Query: 242 KLARHLFAKNSGFEKVLAIKIPNNRAMMHLDTVFTMVDHDKFTIHPAIQSKDGKMDVFTI 301
KLA LF + F+ +LA +IP NR+ MHLDTVFT +D+ FT + D ++ +
Sbjct: 244 KLAISLFKNKTSFDTILAFQIPKNRSYMHLDTVFTQIDYSVFTSFTSD---DMYFSIYVL 300

Query: 302 EPDGDDIKITHSD---NLHETMKAALGLDDLVLIPTGNGDEIVAPREQWNDGSNTLAIAP 358
+ KI + + + LG + +I GD I REQWNDG+N LAIAP
Sbjct: 301 TYNPSSSKIHIKKEKARIKDVLSFYLG-RKIDIIKCAGGDLIHGAREQWNDGANVLAIAP 359

Query: 359 GVVVTYNRNYVSNELLRSYGIKVLEINSSELSRGRGGPRCMSQPLVREDL 408
G ++ Y+RN+V+N+L GIKV I SSELSRGRGGPRCMS PL+RED+
Sbjct: 360 GEIIAYSRNHVTNKLFEENGIKVHRIPSSELSRGRGGPRCMSMPLIREDI 409


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS08805SACTRNSFRASE362e-05 Streptothricin acetyltransferase signature.
		>SACTRNSFRASE#Streptothricin acetyltransferase signature.

Length = 173

Score = 36.1 bits (83), Expect = 2e-05
Identities = 22/86 (25%), Positives = 30/86 (34%), Gaps = 2/86 (2%)

Query: 53 DNQICGFIGYSKVIDE-VEITNIAVAVSEQGKGHARHLLQLLIT-EQIKDSLHVFLEVRL 110
+N G I + I +IAVA + KG LL I + + LE +
Sbjct: 73 ENNCIGRIKIRSNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQD 132

Query: 111 SNEAARKLYESEKFRILGKRKSYYRN 136
N +A Y F I Y N
Sbjct: 133 INISACHFYAKHHFIIGAVDTMLYSN 158


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS08810SACTRNSFRASE362e-05 Streptothricin acetyltransferase signature.
		>SACTRNSFRASE#Streptothricin acetyltransferase signature.

Length = 173

Score = 36.5 bits (84), Expect = 2e-05
Identities = 17/55 (30%), Positives = 27/55 (49%)

Query: 99 ITNIAVRPAYQRKRIGSLLIDEIENFAIMNRCETMSLEVRMSNQDAQRLYRKLGF 153
I +IAV Y++K +G+ L+ + +A N + LE + N A Y K F
Sbjct: 92 IEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHF 146


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS08830NUCEPIMERASE1801e-56 Nucleotide sugar epimerase signature.
		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

Length = 334

Score = 180 bits (459), Expect = 1e-56
Identities = 79/344 (22%), Positives = 145/344 (42%), Gaps = 42/344 (12%)

Query: 1 MTILVLGGAGYIGSHAVDQLVQKGYQVAVVDNLLTGH---------KQAVHPDAHFYEGD 51
M LV G AG+IG H +L++ G+QV +DNL + + P F++ D
Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60

Query: 52 IRDKEFLRSVFEKEPIEGVIHFAASSLVGESVEKPLMYFNNNVYGMQILLEVMHEFNVNK 111
+ D+E + +F E V V S+E P Y ++N+ G +LE +
Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120

Query: 112 IVFSSTAATYGEPKESPITEDTPAN-PKNPYGESKLMMEKMMKWCDQAYGMRYVALRYFN 170
++++S+++ YG ++ P + D + P + Y +K E M YG+ LR+F
Sbjct: 121 LLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFFT 180

Query: 171 VAGAKADASIGEDHTPETHLVPIILQVALGQRKALAVYGDDYDTPDGTCIRDYVQVEDLI 230
V G P+ + A+ + K++ VY G RD+ ++D+
Sbjct: 181 VYGPWGR--------PD--MALFKFTKAMLEGKSIDVYN------YGKMKRDFTYIDDIA 224

Query: 231 AAHILALEYLKEGNES---------------NFFNLGSSKGYSVKEMLEAAREVTGKEIP 275
A I + + + +N+G+S + + ++A + G E
Sbjct: 225 EAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAK 284

Query: 276 AEIAPRRAGDPSRLVASSEKAREILGWKPEYTDIKAIIKTAWDW 319
+ P + GD A ++ E++G+ PE T +K +K +W
Sbjct: 285 KNMLPLQPGDVLETSADTKALYEVIGFTPE-TTVKDGVKNFVNW 327


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS08835RTXTOXINA240.029 Gram-negative bacterial RTX toxin determinant A family...
		>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family

signature.
Length = 1024

Score = 24.2 bits (52), Expect = 0.029
Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 13 LATAAAVAGLVASVKKTVIDPI 34
L+T+AA AGL+AS I P+
Sbjct: 300 LSTSAAAAGLIASAVTLAISPL 321


29EFAU085_RS09130EFAU085_RS09155N        Y        NPathogenicity Island (unbiased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
EFAU085_RS091301150.719093LysR family transcriptional regulator
EFAU085_RS09135014-0.071575MerR family transcriptional regulator
EFAU085_RS091401130.076561MFS transporter
EFAU085_RS09145114-0.117214hypothetical protein
EFAU085_RS091501160.269933hypothetical protein
EFAU085_RS091550160.003114hypothetical protein
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS09130PF06917280.010 Periplasmic pectate lyase
		>PF06917#Periplasmic pectate lyase

Length = 555

Score = 27.6 bits (61), Expect = 0.010
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 6/52 (11%)

Query: 35 VLHLTQPTLSRQLKELEEELGTELFVRENRKMILTEAGYFLKKPSRRNFRFN 86
++ L + L L ++G +LF R + G F++ R FR +
Sbjct: 453 LVELAEHCQCPTLFTLAWQIGDDLFKRHYHR------GLFVESAQHRYFRID 498


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS09140TCRTETB531e-09 Tetracycline resistance protein TetB signature.
		>TCRTETB#Tetracycline resistance protein TetB signature.

Length = 458

Score = 52.6 bits (126), Expect = 1e-09
Identities = 32/169 (18%), Positives = 74/169 (43%), Gaps = 1/169 (0%)

Query: 21 MDIMFLAFSLSSMITSFHISGTQAGFISTITNLGMLIGGIFFGIIADKYGRVKVFSQTVL 80
++ M L SL + F+ +++T L IG +G ++D+ G ++ ++
Sbjct: 28 LNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGII 87

Query: 81 LFSIASLLMYFASNIYLVYLF-RFIAGVGAGGEYGACMSLISESFSKKQIGRASSVAGIG 139
+ S++ + + + + + RFI G GA M +++ K+ G+A + G
Sbjct: 88 INCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSI 147

Query: 140 AQVGAALAAILAAVIIPTFGWKMLYVVGVLPVLMVLFIRRGLTEPKEFK 188
+G + + +I W L ++ ++ ++ V F+ + L + K
Sbjct: 148 VAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKEVRIK 196


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS09145PF05043474e-09 Transcriptional activator
		>PF05043#Transcriptional activator

Length = 493

Score = 46.9 bits (111), Expect = 4e-09
Identities = 31/136 (22%), Positives = 69/136 (50%), Gaps = 5/136 (3%)

Query: 1 MQTFLTKVSQKKIKMIHLLLETERWCSIEELQNELKVSSKSILNYLTDLEELFQKYPDKV 60
M+ L+K S ++++++ LL E +RW EL L + +++ + L+ ++ F PD +
Sbjct: 1 MRDLLSKKSHRQLELLELLFEHKRWFHRSELAELLNCTERAVKDDLSHVKSAF---PDLI 57

Query: 61 ILKNENNRRFSMEKQENFPIYIIYLHFYRKSYNYHLIEFMYQHPEKNLEDYADAQYTSVS 120
+ N R + ++ I ++Y HF++ S ++ ++EF++ + E Y S S
Sbjct: 58 FHSSTNGIR--IINTDDSDIEMVYHHFFKHSTHFSILEFIFFNEGCQAESICKEFYISSS 115

Query: 121 TVFRYAKLLVKYFEMT 136
+++R + K +
Sbjct: 116 SLYRIISQINKVIKRQ 131


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS09155IGASERPTASE372e-05 IgA-specific serine endopeptidase (S6) signature.
		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.

Length = 1541

Score = 37.0 bits (85), Expect = 2e-05
Identities = 20/126 (15%), Positives = 41/126 (32%), Gaps = 3/126 (2%)

Query: 9 SQAEANPTKENYATASAAIQALPENKQELTSRLAAIDSTIKAKEAEEERKKQEEIARQQA 68
Q T +N A A + N Q + ++ +E E+ + +
Sbjct: 1055 EQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKV 1114

Query: 69 EQAQQEAIAQQQAEQA---RQEAIAQQQAEQARQQSAAEQASQQAQAAAPEQNNEQTVYV 125
E + + + + ++ + Q Q QAE AR+ + + EQ
Sbjct: 1115 ETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKE 1174

Query: 126 TPTGSK 131
T + +
Sbjct: 1175 TSSNVE 1180



Score = 30.8 bits (69), Expect = 0.002
Identities = 21/102 (20%), Positives = 37/102 (36%), Gaps = 3/102 (2%)

Query: 21 ATASAAIQALPENKQELTSRLAAIDSTIKAKEAEEERKKQEEIARQQAEQAQQEAIAQQQ 80
T IQA + +A +D A + E AE ++QE+ ++
Sbjct: 997 ITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTE---TVAENSKQESKTVEK 1053

Query: 81 AEQARQEAIAQQQAEQARQQSAAEQASQQAQAAAPEQNNEQT 122
EQ E AQ + +S + +Q + A ++T
Sbjct: 1054 NEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKET 1095



Score = 27.7 bits (61), Expect = 0.023
Identities = 18/83 (21%), Positives = 34/83 (40%)

Query: 49 KAKEAEEERKKQEEIARQQAEQAQQEAIAQQQAEQARQEAIAQQQAEQARQQSAAEQASQ 108
EE + +E A + AE ++QE+ ++ EQ ++ A+
Sbjct: 1009 SVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREV 1068

Query: 109 QAQAAAPEQNNEQTVYVTPTGSK 131
+A + + N QT V +GS+
Sbjct: 1069 AKEAKSNVKANTQTNEVAQSGSE 1091


30EFAU085_RS11705EFAU085_RS11730N        Y        NPathogenicity Island (unbiased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
EFAU085_RS11705-290.738397cell division protein FtsK
EFAU085_RS11710-111-1.503174aryl-phospho-beta-D-glucosidase
EFAU085_RS11715113-2.486522glutamine ABC transporter substrate-binding
EFAU085_RS11720114-3.358158amino acid ABC transporter ATPase
EFAU085_RS11725114-3.897243amino acid ABC transporter permease
EFAU085_RS11730115-4.387291prolyl-tRNA synthetase
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS11705IGASERPTASE443e-06 IgA-specific serine endopeptidase (S6) signature.
		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.

Length = 1541

Score = 43.5 bits (102), Expect = 3e-06
Identities = 29/163 (17%), Positives = 54/163 (33%), Gaps = 16/163 (9%)

Query: 205 LEGDPAKQARKQAAKEERMKQRAEAKEARRLAAKEAAEKEAAEYEKKKAVSQQRENTADE 264
++ + Q+ E + Q E KE A E EK E EK + V + + +
Sbjct: 1076 VKANTQTNEVAQSGSETKETQTTETKET---ATVEKEEKAKVETEKTQEVPKVTSQVSPK 1132

Query: 265 WQEPENTEP------EQLSFVPIDSFQ-------ENIHPANLEKPVPDTPKQTNTAEGFS 311
++ E +P E V I Q + PA + P +T
Sbjct: 1133 QEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTG 1192

Query: 312 DELPEDDGTSLEFEIEAEQENQDYELPTVDLLDSIPTVDQSDE 354
+ + E+ + + ++ P S+ +V + E
Sbjct: 1193 NSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVE 1235



Score = 36.2 bits (83), Expect = 6e-04
Identities = 29/174 (16%), Positives = 48/174 (27%), Gaps = 22/174 (12%)

Query: 210 AKQARKQAAKEERMKQRAEAKEARR---------------LAAKEAAEKEAAEYEKKKAV 254
+ +Q A E + R AKEA+ KE E E +
Sbjct: 1050 TVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKE 1109

Query: 255 SQQRENTADEWQEPENTEPEQLSFVPIDSFQENIHPANLEKPV-----PDTPKQTNTAEG 309
+ + T + P+ T ++ Q PA P P + T
Sbjct: 1110 EKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTE 1169

Query: 310 -FSDELPEDDGTSLEFEIEAEQENQDYELPTVDLLDSI-PTVDQSDEYKKIEKN 361
+ E + + N E P + PTV+ K ++
Sbjct: 1170 QPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRH 1223


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS11715adhesinb310.004 Adhesin B signature.
		>adhesinb#Adhesin B signature.

Length = 310

Score = 31.4 bits (71), Expect = 0.004
Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 1 MKKTSFLFALIAGLLLFAGCSNKKTSAD 28
MKK FL L+ + A CS++K+S +
Sbjct: 1 MKKCRFLVLLLLAFVGLAACSSQKSSTE 28


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS11720PF05272310.003 Virulence-associated E family protein
		>PF05272#Virulence-associated E family protein

Length = 892

Score = 31.2 bits (70), Expect = 0.003
Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 30 LAIVGPSGGGKTTLLRILAGLE 51
+ + G G GK+TL+ L GL+
Sbjct: 599 VVLEGTGGIGKSTLINTLVGLD 620


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS11730TYPE3OMGPROT280.028 Type III secretion system outer membrane G protein ...
		>TYPE3OMGPROT#Type III secretion system outer membrane G protein

family signature.
Length = 607

Score = 27.5 bits (61), Expect = 0.028
Identities = 9/38 (23%), Positives = 20/38 (52%), Gaps = 3/38 (7%)

Query: 84 VSEEQLPDLLGVPAGT---VTPLALMHDKEKKIQVVID 118
V+ +++ +L G+ GT +TP L + +I + +
Sbjct: 385 VTGKEVAELKGITYGTMLRMTPRVLTQGDKSEISLNLH 422


31EFAU085_RS13145EFAU085_RS13160N        Y        NPathogenicity Island (unbiased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
EFAU085_RS13145-210-1.634676GntR family transcriptional regulator
EFAU085_RS13150-210-1.633262alpha-1,2-mannosidase
EFAU085_RS13155-310-2.322147AraC family transcriptional regulator
EFAU085_RS13160-210-2.016902sensor histidine kinase
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS13145BACINVASINB290.047 Salmonella/Shigella invasin protein B signature.
		>BACINVASINB#Salmonella/Shigella invasin protein B signature.

Length = 593

Score = 28.6 bits (63), Expect = 0.047
Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 223 EALDKAGLTFHTSLDDKSATLDELLSYITKYEVTA 257
EALDKA + D A ++ + +TK++ TA
Sbjct: 200 EALDKATDATVKAGTDAKAKAEKADNILTKFQGTA 234


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS13150ALARACEMASE320.008 Alanine racemase signature.
		>ALARACEMASE#Alanine racemase signature.

Length = 356

Score = 32.1 bits (73), Expect = 0.008
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 160 EGKITHFAGSEDPDFSFYFILRFEYPLTIDELAVSNKNSDSIPLYFEQTKKQTIRFG 216
++HFA +E PD + R E E S NS + L+ + +R G
Sbjct: 154 MTLMSHFAEAEHPDGISGAMARIEQAAEGLECRRSLSNSAAT-LWHPEAHFDWVRPG 209


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS13155HTHFIS842e-19 FIS bacterial regulatory protein HTH signature.
		>HTHFIS#FIS bacterial regulatory protein HTH signature.

Length = 484

Score = 84.1 bits (208), Expect = 2e-19
Identities = 35/131 (26%), Positives = 58/131 (44%), Gaps = 6/131 (4%)

Query: 4 VLLVDDEYMILNGLKKIIDWQSLGFQIVATAENAKEGLAVLEQRQIDLVVTDVTMPEING 63
+L+ DD+ I L + + G+ V NA + DLVVTDV MP+ N
Sbjct: 6 ILVADDDAAIRTVLNQAL--SRAGYD-VRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62

Query: 64 LEFIEAAQKERHNFEFMILSGYQEFDYLKGGMQLGAVNYLMKPVNKFELVESLKKIKTRL 123
+ + +K R + +++S F + GA +YL KP F+L E + I L
Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKP---FDLTELIGIIGRAL 119

Query: 124 DQQNEQKNQQE 134
+ + ++ E
Sbjct: 120 AEPKRRPSKLE 130


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS13160PF065801951e-59 Sensor histidine kinase
		>PF06580#Sensor histidine kinase

Length = 349

Score = 195 bits (498), Expect = 1e-59
Identities = 54/209 (25%), Positives = 103/209 (49%), Gaps = 16/209 (7%)

Query: 361 DIYKLEIKQQDAHMRALQAQINPHFLYNTLEYIRMYAISEGSEELADVVYAFSALLRNN- 419
D +K+ Q+A + AL+AQINPHF++N L IR I E + +++ + S L+R +
Sbjct: 150 DQWKMASMAQEAQLMALKAQINPHFMFNALNNIRA-LILEDPTKAREMLTSLSELMRYSL 208

Query: 420 -TNQEKTITLKEELDFCEKYVYLYQMRYPNRVAYHFMIDPDLEKIEVPKFVIQPLVENYF 478
+ + ++L +EL + Y+ L +++ +R+ + I+P + ++VP ++Q LVEN
Sbjct: 209 RYSNARQVSLADELTVVDSYLQLASIQFEDRLQFENQINPAIMDVQVPPMLVQTLVENGI 268

Query: 479 KHGIDFTRFDNALSVKVLQEGKRVRIIIKDNGKGMTEKRLKQIEEKLSHPKVELHGSIGL 538
KHGI + +K ++ V + +++ G + + GL
Sbjct: 269 KHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALK-------------NTKESTGTGL 315

Query: 539 QNVNERLRASFGSSYYMSLENNETGGLTV 567
QNV ERL+ +G+ + L + +
Sbjct: 316 QNVRERLQMLYGTEAQIKLSEKQGKVNAM 344


32EFAU085_RS13795EFAU085_RS13830N        Y        NPathogenicity Island (unbiased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
EFAU085_RS13795-2110.147551MFS transporter
EFAU085_RS13805-2110.071450membrane protein
EFAU085_RS13810-2110.671445ABC transporter
EFAU085_RS138150100.640383NAD(P)H nitroreductase
EFAU085_RS138200111.539023MarR family transcriptional regulator
EFAU085_RS138250111.459156mannosyl-glycoprotein
EFAU085_RS138300121.428291oxidoreductase
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS13795TCRTETA912e-22 Tetracycline resistance protein signature.
		>TCRTETA#Tetracycline resistance protein signature.

Length = 399

Score = 91.0 bits (226), Expect = 2e-22
Identities = 81/358 (22%), Positives = 139/358 (38%), Gaps = 18/358 (5%)

Query: 19 KGKSSALVVAATCMIAFMGVGLVDPILKTIAAQL---NATPAETTLLFTSYMLVTGVVML 75
K +V+ +T + +G+GL+ P+L + L N A +L Y L+
Sbjct: 2 KPNRPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAP 61

Query: 76 FTGFLSSRIGLKKTLMTGLFIIVVFAGLGGLSGNIGMLIGLRAGWGVGNALFVSTALATI 135
G LS R G + L+ L V + + + +L R G+ A + A A I
Sbjct: 62 VLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATG-AVAGAYI 120

Query: 136 VSILVGNTE-KAIMMYEAALGCGMAVGPLVGGVLGSGSWRYPFFGVAFLMFCGFIALAVL 194
I G+ + A G GM GP++GG++G S PFF A L F+ L
Sbjct: 121 ADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFL 180

Query: 195 LPETEKPKRKVGLWEGVKALSNHKLRSV--GLIALLYNFGFFTLLAYAPFLL-------- 244
LPE+ K +R+ E + L++ + + AL+ F L+ P L
Sbjct: 181 LPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDR 240

Query: 245 IGYSELEVGFVFFGWGVLLAIASIFVAPALERKFTTYRTILAAFVLFIICLLLLGAGTSM 304
+ +G +G+L ++A + + + R ++ + +LL T
Sbjct: 241 FHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRG 300

Query: 305 PVLVPISIVLA--GFFQGIINTLLTTIA-MEIPGLQRNVASSSYSFVRFFGGALAPFI 359
+ PI ++LA G + +L+ E G + ++ S G L I
Sbjct: 301 WMAFPIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAI 358


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS13810THERMOLYSIN340.001 Thermolysin metalloprotease (M4) family signature.
		>THERMOLYSIN#Thermolysin metalloprotease (M4) family signature.

Length = 544

Score = 34.2 bits (78), Expect = 0.001
Identities = 12/58 (20%), Positives = 28/58 (48%)

Query: 172 VKDGEIREFSGNYSAYLTQKELEKKTQLREAESIMKEKKRLEKSIQEKKKQAEKLEKV 229
V DGE+ SG L ++ L+ + + ++ M K+ + + +++ AE+ +
Sbjct: 111 VNDGELSSLSGTLIPNLDKRTLKTEAAISIQQAEMIAKQDVADRVTKERPAAEEGKPT 168


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS13825FLGFLGJ778e-18 Flagellar protein FlgJ signature.
		>FLGFLGJ#Flagellar protein FlgJ signature.

Length = 313

Score = 77.1 bits (189), Expect = 8e-18
Identities = 64/214 (29%), Positives = 94/214 (43%), Gaps = 26/214 (12%)

Query: 71 TTEQTQTEDSTSAEAQNNP-ENAEEITNQLTDGQTLTHTHQADLSEFENYTGYAFYARSS 129
T EQ E+ST A P E NQ LS+ Y S
Sbjct: 99 TPEQPLPEESTPAAPMKFPLETVVRYQNQ-------------ALSQLVQKAVPRNYDDSL 145

Query: 130 ANSQQAFIDSIASTAQSLASANDLYASVMIAQAIVESGWGNSTLASA---PNYNLFGIK- 185
+AF+ ++ AQ + + + +++AQA +ESGWG + P+YNLFG+K
Sbjct: 146 PGDSKAFLAQLSLPAQLASQQSGVPHHLILAQAALESGWGQRQIRRENGEPSYNLFGVKA 205

Query: 186 -GSYNGQSVTMPTSEYVNGQWITVNAAFRKYPSYKESLQDNVTVLKTTSFQPGVYYYSGA 244
G++ G + T+EY NG+ V A FR Y SY E+L D V +L V
Sbjct: 206 SGNWKGPVTEITTTEYENGEAKKVKAKFRVYSSYLEALSDYVGLLTRNPRYAAV------ 259

Query: 245 WKSNTNSYKDATAWLTGRYATAPNYGSTLNNVIE 278
+ ++ + A A YAT P+Y L N+I+
Sbjct: 260 -TTAASAEQGAQALQDAGYATDPHYARKLTNMIQ 292


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS13830DHBDHDRGNASE964e-26 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig...
		>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase

signature.
Length = 261

Score = 96.3 bits (239), Expect = 4e-26
Identities = 55/190 (28%), Positives = 92/190 (48%), Gaps = 2/190 (1%)

Query: 7 KVIVIMGASSGIGEATTKLLAEKGAKLVIAARREDRLKAIKESLPEAELYIQT--ADVRD 64
K+ I GA+ GIGEA + LA +GA + ++L+ + SL + + ADVRD
Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68

Query: 65 FAQVQAVIDLAMEKFGRIDVLYNNAGIMPTAPLVEGHRDEWQNMLDINIMGVLNGISAVL 124
A + + + G ID+L N AG++ + +EW+ +N GV N +V
Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128

Query: 125 PIMEKQKSGHIISTDSVAGHVVYPDSAVYCGTKFAVRAIMEGLRQEQRQNNIKSTIISPG 184
M ++SG I++ S V A Y +K A + L E + NI+ I+SPG
Sbjct: 129 KYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPG 188

Query: 185 AVQTELYQTI 194
+ +T++ ++
Sbjct: 189 STETDMQWSL 198


33EFAU085_RS14090EFAU085_RS14130N        Y        NPathogenicity Island (unbiased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
EFAU085_RS14090321-1.737721conjugative transposon membrane protein
EFAU085_RS14095423-4.910677peptidase P60
EFAU085_RS14100722-3.746276conjugative transposon protein
EFAU085_RS14105823-3.877478hypothetical protein
EFAU085_RS14115823-4.610888hypothetical protein
EFAU085_RS14120722-4.730650N-acetylmuramoyl-L-alanine amidase
EFAU085_RS14125723-4.993648pyridine nucleotide-disulfide oxidoreductase
EFAU085_RS14130719-4.040665Enterococcal surface protein
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS14090TYPE4SSCAGX310.021 Type IV secretion system CagX conjugation protein si...
		>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein

signature.
Length = 522

Score = 30.9 bits (69), Expect = 0.021
Identities = 32/132 (24%), Positives = 64/132 (48%), Gaps = 10/132 (7%)

Query: 560 KGIEKTKKAPEEFKRGLVQEKANRGELREKQQQRRDEKIAEKRKVLNEIGNPHGKRRENV 619
K +E+ KKA E+ K Q + + + REK+++ R + A + N + NP N
Sbjct: 139 KELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANLENLTNAMSNPQ-NLSNNK 197

Query: 620 PIKAKVQSQKDRAPKRIVRANSNPEIKRKFASQEIISKGINQSSSKKNSFQQVKRRS--T 677
+ ++ Q++ ++ R E + A ++I + +KK + + V++R+
Sbjct: 198 NLSELIKQQRENELDQMERLEDMQEQAQANALKQI------EELNKKQAEEAVRQRAKDK 251

Query: 678 LSKRTNRKVQKS 689
+S +T+ K QKS
Sbjct: 252 ISIKTD-KSQKS 262


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS14100YERSSTKINASE290.033 Yersinia serine/threonine protein kinase signature.
		>YERSSTKINASE#Yersinia serine/threonine protein kinase signature.

Length = 732

Score = 28.6 bits (63), Expect = 0.033
Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 9/130 (6%)

Query: 92 KEAIEKRMNNLEQYLTEEGFALSQDMVRADIPTNSEVQSVKVLDVEKSSEEFVVSFLVEQ 151
K + +++N L+Q LS + R+ + QS++ D S VV F EQ
Sbjct: 601 KITLSQQLNTLQQQQESAKAQLSILINRSGSWADVARQSLQRFD----STRPVVKFGTEQ 656

Query: 152 KITEGKKAQSISSAY---RVTIFEDENRNYIVTSLPTMIAKPDRAKYKTKQVENDSKIDA 208
++ + +A V+ F D+ RN+ V S+P +I + VE K+
Sbjct: 657 YTAIHRQMMAAHAAITLQEVSEFTDDMRNFTVDSIPLLIQLGRSSLMDEHLVEQREKLRE 716

Query: 209 KTTEEIAEFL 218
TT IAE L
Sbjct: 717 LTT--IAERL 724


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS14120FLGFLGJ681e-14 Flagellar protein FlgJ signature.
		>FLGFLGJ#Flagellar protein FlgJ signature.

Length = 313

Score = 68.2 bits (166), Expect = 1e-14
Identities = 48/155 (30%), Positives = 79/155 (50%), Gaps = 10/155 (6%)

Query: 192 ENFIMKIGESARKIGQKYDLYASVMIAQAILESASGQSQLAQA---PNYNLFGIKGTYN- 247
+ F+ ++ A+ Q+ + +++AQA LES GQ Q+ + P+YNLFG+K + N
Sbjct: 150 KAFLAQLSLPAQLASQQSGVPHHLILAQAALESGWGQRQIRRENGEPSYNLFGVKASGNW 209

Query: 248 GNFVIMVTNEDLGNGTLYTTQSKFRVYENYEESFEDYAKLLTKGISGNKDFYAGALKANS 307
V +T + NG ++KFRVY +Y E+ DY LLT+ N + A A++
Sbjct: 210 KGPVTEITTTEYENGEAKKVKAKFRVYSSYLEALSDYVGLLTR----NPRYAAVTTAASA 265

Query: 308 KTYREATKFLTGRYATDTQYYLKLNELIKTYDLTN 342
+ +A + YATD Y KL +I+ +
Sbjct: 266 EQGAQALQ--DAGYATDPHYARKLTNMIQQMKSIS 298


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS14125NUCEPIMERASE356e-04 Nucleotide sugar epimerase signature.
		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

Length = 334

Score = 34.8 bits (80), Expect = 6e-04
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 4/53 (7%)

Query: 156 GAGYIGVEIAEAIRKRGKEVYLFDVADRVLSTYYDRSFSDKVEEILSKNGIHL 208
AG+IG +++ + + G +V D L+ YYD S E+L++ G
Sbjct: 8 AAGFIGFHVSKRLLEAGHQVVGID----NLNDYYDVSLKQARLELLAQPGFQF 56


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
EFAU085_RS14130GPOSANCHOR330.009 Gram-positive coccus surface protein anchor signature.
		>GPOSANCHOR#Gram-positive coccus surface protein anchor signature.

Length = 539

Score = 33.5 bits (76), Expect = 0.009
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 1658 NEKDSEKAVSKDNKTDNQGSKQNKNRGKSSPQKQSSKAYPKTGEIDSNIFTISGGLILLG 1717
+ K KAV + G+K N+N+ +P K++ + P TGE +N F + L ++
Sbjct: 470 DAKPGNKAVPGKGQAPQAGTKPNQNK---APMKETKRQLPSTGE-TANPFFTAAALTVMA 525

Query: 1718 TLGLLGYKNRKKEN 1731
T G+ RK+EN
Sbjct: 526 TAGVAAVVKRKEEN 539



 
Contact Sachin Pundhir for Bugs/Comments.
For best view 1024 x 768 resolution & IE 6.0 or above recommended.