>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 31.3 bits (70), Expect = 0.027 Identities = 36/173 (20%), Positives = 71/173 (41%), Gaps = 19/173 (10%) Query: 121 QEESQLKERILKRKNEKIILNVNFIGEEVLGEEEASARFEKY---SQALKSNYIQYISIK 177 Q+ S+ ++ + + EK+ F+ E+ + + Y S+ K Y + Sbjct: 118 QDLSEEEKNSMNSRGEKVPFASRFVFEKKRETPKLIINIKDYAINSEQSKEVYYEIGKGI 177 Query: 178 ITTIFSQINILDFEY-----SKKEIVKRLDALYALALEEEKKQGMPKFINLDMEEFRDLE 232 I S+ LD E+ S + D L++ +E K + K I+++ ++ Sbjct: 178 SLDIISKDKSLDPEFLNLIKSLSDDSDSSDLLFSQKFKE-KLELNNKSIDINF-----IK 231 Query: 233 LTVESFMESIAK-----FDLNAGIVLQAYIPDSYEYLKKLHAFSKERVLKGLK 280 + F + + F + VL+ Y PD +EY+ KL E++ + LK Sbjct: 232 ENLTEFQHAFSLAFSYYFAPDHRTVLELYAPDMFEYMNKLEKGGFEKISESLK 284
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 40.4 bits (94), Expect = 5e-06 Identities = 26/140 (18%), Positives = 48/140 (34%) Query: 3 ALKNSQQVLENEKAELKTEKDNLTKANAELKTEKERLTKEKTELTEKNKELDDQVGLLKG 62 L+ + + N + L A L K L K + ++ L+ Sbjct: 194 ELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEA 253 Query: 63 QIKSLEQSQQVLKNENTDLDNKITDLSKENQNLTKEKTELTEKNQKLTTEKDNLTTDLSN 122 + +LE Q L+ N T S + + L EK L + L + L + + Sbjct: 254 EKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQS 313 Query: 123 AKIQAIQANQEKDKLEQKHA 142 + + + K +LE +H Sbjct: 314 LRRDLDASREAKKQLEAEHQ 333 Score = 39.3 bits (91), Expect = 1e-05 Identities = 41/223 (18%), Positives = 75/223 (33%), Gaps = 2/223 (0%) Query: 11 LENEKAELKTEKDNLTKANAELKTEKERLTKEKTELTEKNKELDDQVGLLKGQIKSLEQS 70 E E LK + +L+ N LK + LT+E + EK ++ D + +I+ LE Sbjct: 62 FEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEAR 121 Query: 71 QQVLKNENTDLDNKITDLSKENQNLTKEKTELTEKNQKLTTEKDNLTTDLSNAKIQAIQA 130 + L+ N T S + + L EK L + L + + + Sbjct: 122 KADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTL 181 Query: 131 NQEKDKLEQKHAPYKKLEKLYEVFLEVKGCLNFNFVEKTHSAMDLIASV--LSDSKYYLE 188 EK LE + A +K + F + + A + + Sbjct: 182 EAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFS 241 Query: 189 SLYNKASQELSDRKSDKGEKLAELFDLLFEYVKDNKFERLKEP 231 + + + L K+ + AEL L + + + K Sbjct: 242 TADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIK 284 Score = 33.1 bits (75), Expect = 0.001 Identities = 22/146 (15%), Positives = 55/146 (37%) Query: 2 NALKNSQQVLENEKAELKTEKDNLTKANAELKTEKERLTKEKTELTEKNKELDDQVGLLK 61 L+ + + N + L A L+ + L K + ++ L+ Sbjct: 228 ADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLE 287 Query: 62 GQIKSLEQSQQVLKNENTDLDNKITDLSKENQNLTKEKTELTEKNQKLTTEKDNLTTDLS 121 + +LE + L++++ L+ L ++ + K +L ++QKL + Sbjct: 288 AEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQ 347 Query: 122 NAKIQAIQANQEKDKLEQKHAPYKKL 147 + + + + K +LE +H ++ Sbjct: 348 SLRRDLDASREAKKQLEAEHQKLEEQ 373 Score = 30.8 bits (69), Expect = 0.007 Identities = 24/138 (17%), Positives = 49/138 (35%) Query: 1 MNALKNSQQVLENEKAELKTEKDNLTKANAELKTEKERLTKEKTELTEKNKELDDQVGLL 60 L+ + + N + L A L+ EK L + L + L + Sbjct: 262 QAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDAS 321 Query: 61 KGQIKSLEQSQQVLKNENTDLDNKITDLSKENQNLTKEKTELTEKNQKLTTEKDNLTTDL 120 + K LE Q L+ +N + L ++ + K +L ++QKL + Sbjct: 322 REAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASR 381 Query: 121 SNAKIQAIQANQEKDKLE 138 + + + + K ++E Sbjct: 382 QSLRRDLDASREAKKQVE 399
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 39.3 bits (91), Expect = 1e-05 Identities = 45/264 (17%), Positives = 82/264 (31%), Gaps = 6/264 (2%) Query: 10 GFYQVREELEARISELEDENENLINENTRLLASKEQLTKENTELLREKDNLIKENTELKT 69 F L+ + S+L N+ L + N L ++ + + + EL+ Sbjct: 61 KFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEA 120 Query: 70 DKDNLNNQLNASQMQVNELKNAHQVLEKEKDELLKDKDNLTKEKAELTEKNQKLTTEKDN 129 K +L L + + LE EK L K +L K + + + Sbjct: 121 RKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKT 180 Query: 130 LTKANAELKKENDKLNHQVIALTKEQDSLKYEKELCANLEKDNQQLTDKLKKLESAQKNL 189 L A L+ +L L + + LE + L + LE A + Sbjct: 181 LEAEKAALEARQAELEKA---LEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGA 237 Query: 190 ENSKNQLLQAREKIAKENTELEREMARLKSLEATDKSELDLQNRRFKSA---IEDLKRQN 246 N + + E LE A L+ + + + K+ L+ + Sbjct: 238 MNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEK 297 Query: 247 RKLEEENIALKERVDGLKEQLSKQ 270 LE ++ L L+ L Sbjct: 298 ADLEHQSQVLNANRQSLRRDLDAS 321 Score = 33.9 bits (77), Expect = 7e-04 Identities = 34/210 (16%), Positives = 66/210 (31%), Gaps = 4/210 (1%) Query: 13 QVREELEARISELEDENENLINENTRLLASKEQLTKENTELLREKDNLIKENTELKTDKD 72 + E + + + L E L A K L K + + L+ +K Sbjct: 127 KALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKA 186 Query: 73 NLNNQLNASQMQVNELKNAHQVLEKEKDELLKDKDNLTKEKAELTEKNQKLTTEKDNLTK 132 L + + + N + L +K L KA+L + + + Sbjct: 187 ALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSA 246 Query: 133 ANAELKKENDKLNHQVIALTKE----QDSLKYEKELCANLEKDNQQLTDKLKKLESAQKN 188 L+ E L + L K + + LE + L + LE + Sbjct: 247 KIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQV 306 Query: 189 LENSKNQLLQAREKIAKENTELEREMARLK 218 L ++ L + + + +LE E +L+ Sbjct: 307 LNANRQSLRRDLDASREAKKQLEAEHQKLE 336 Score = 32.3 bits (73), Expect = 0.002 Identities = 45/249 (18%), Positives = 88/249 (35%), Gaps = 14/249 (5%) Query: 26 EDENENLINENTRLLASKEQLTKENTELLREKDNLIKENTELKTDKDNLNNQLNASQMQV 85 D E + + L +N++L L N EL + N +L + + Sbjct: 49 TDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSL 108 Query: 86 NELKNAHQVLEKEKDELLKDKDNLTKEKAELTEKNQKLTTEKDNLTKANAELKKENDKLN 145 +E + Q LE K +L K + + K + L EK L A+L+K + Sbjct: 109 SEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAM 168 Query: 146 HQVIALTKEQDSLKYEKELCANLEKDNQQLTDKLKKLESAQKNLENSKNQLLQAREKIAK 205 + A + + +L+ EK A LE +L L+ + L + +A Sbjct: 169 NFSTADSAKIKTLEAEK---AALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAA 225 Query: 206 ENTELEREMARLKSLEATDKSELDLQNRRFKSAIEDLKRQNRKLEEENIALKERVDGLKE 265 +LE+ + + D +++ + L+ + LE L++ ++G Sbjct: 226 RKADLEKALEGAMNFSTADSAKI-----------KTLEAEKAALEARQAELEKALEGAMN 274 Query: 266 QLSKQPKPQ 274 + Sbjct: 275 FSTADSAKI 283
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 1038 bits (2686), Expect = 0.0 Identities = 355/569 (62%), Positives = 444/569 (78%), Gaps = 4/569 (0%) Query: 3 KISRKEYASMYGPTTGDKVRLGDTDLIAEVEHDYTIYGEELKFGGGKTLREGMSQSN-NP 61 ++SR YA+M+GPT GDKVRL DT+L EVE D+T +GEE+KFGGGK +R+GM QS Sbjct: 4 RMSRAAYANMFGPTVGDKVRLADTELFIEVEKDFTTHGEEVKFGGGKVIRDGMGQSQVTR 63 Query: 62 SKEELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEAL 121 +D +ITNALI+D+ GI KADIG+KDG+IA IGK GN DMQ GV + VGP TE + Sbjct: 64 EGGAVDTVITNALILDHWGIVKADIGLKDGRIAAIGKAGNPDMQPGV--TIIVGPGTEVI 121 Query: 122 AGEGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKF 181 AGEG IVTAGG+D+HIHFI PQQI A SG+T M+GGGTGPA GT ATT TPG ++ Sbjct: 122 AGEGKIVTAGGMDSHIHFICPQQIEEALMSGLTCMLGGGTGPAHGTLATTCTPGPWHIAR 181 Query: 182 ILRAAEEYSMNLGFLAKGNASNDASLADQIEAGAIGLKIHEDWGTTPSAINHALDVADKY 241 ++ AA+ + MNL F KGNAS +L + + GA LK+HEDWGTTP+AI+ L VAD+Y Sbjct: 182 MIEAADAFPMNLAFAGKGNASLPGALVEMVLGGATSLKLHEDWGTTPAAIDCCLSVADEY 241 Query: 242 DVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTYHTEGAGGGHAPDIIKVAGEHNILPASTN 301 DVQV IHTDTLNE+G VEDT+AAI GRT+H YHTEGAGGGHAPDII++ G+ N++P+STN Sbjct: 242 DVQVMIHTDTLNESGFVEDTIAAIKGRTIHAYHTEGAGGGHAPDIIRICGQPNVIPSSTN 301 Query: 302 PTIPFTVNTEAEHMDMLMVCHHLDKSIKEDVQFADSRIRPQTIAAEDTLHDMGIFSITSS 361 PT P+TVNT AEH+DMLMVCHHL +I ED+ FA+SRIR +TIAAED LHD+G FSI SS Sbjct: 302 PTRPYTVNTLAEHLDMLMVCHHLSPTIPEDIAFAESRIRKETIAAEDILHDIGAFSIISS 361 Query: 362 DSQAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISE 421 DSQAMGRVGEV RTWQTADK K++ GRLKEE GDNDNFR+KRY++KYTINPAIAHG+S Sbjct: 362 DSQAMGRVGEVAIRTWQTADKMKRQRGRLKEETGDNDNFRVKRYIAKYTINPAIAHGLSH 421 Query: 422 YVGSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPVYYREMFAH 481 +GS+EVGK ADLVLW+PAFFGVKP+M++ GG IA + MGD NASIPTPQPV+YR MF Sbjct: 422 EIGSLEVGKRADLVLWNPAFFGVKPDMVLLGGTIAAAPMGDPNASIPTPQPVHYRPMFGA 481 Query: 482 HGKAKYDANITFVSQAAYDKGIKEELGLERQVLPVKNCR-NITKKDMQFNDTTAHIEVNS 540 +G+++ ++++TFVSQA+ D G+ LG+ ++++ V+N R I K M N T HIEV+ Sbjct: 482 YGRSRTNSSVTFVSQASLDAGLAGRLGVAKELVAVQNTRGGIGKASMIHNSLTPHIEVDP 541 Query: 541 ETYHVFVDGKEVTSKPANKVSLAQLFSIF 569 ETY V DG+ +T +PA + +AQ + +F Sbjct: 542 ETYEVRADGELLTCEPATVLPMAQRYFLF 570
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 28.9 bits (64), Expect = 0.019 Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 5/56 (8%) Query: 123 GEELTTREKGFKAVKEFLNEQLENIDLNYPNLVVAYEPIWAIGTKKS----ASLEE 174 E TT K F +K+ LN +L N + N N + EPI+A KK ASLEE Sbjct: 855 QAEATTLSKNFSDIKKELNAKLGNFN-NNNNNGLKNEPIYAKVNKKKAGQAASLEE 909
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 58.9 bits (142), Expect = 2e-12 Identities = 60/263 (22%), Positives = 108/263 (41%), Gaps = 29/263 (11%) Query: 4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATL-AFTYLNESLEKRVRPIAQELNSPYVYE 62 ++GK I G A + I +A++ +QGA + A Y E LEK V + E + Sbjct: 6 IEGKIAFITGAA--QGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFP 63 Query: 63 LDVSKEEHFKPLYDSVKKDLGSLDFIVHSVAF--------APKEALEGSLLETSKSAFNT 114 DV + +++++G +D +V+ E E + S FN Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 115 AMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKYMVHYNVMGLAKAALESAVRYLAV 174 + +S Y + + ++ + +N A V S M Y +KAA + L + Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPRTS-------MAAY---ASSKAAAVMFTKCLGL 173 Query: 175 DLGKHNIRVNALSAGPIRT-----LASSGIADFRMILKWNE---INAPLRKNVSLEEVGN 226 +L ++NIR N +S G T L + ++I E PL+K ++ + Sbjct: 174 ELAEYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIAD 233 Query: 227 AGMYLLSSLSSGVSGEVHFVDAG 249 A ++L+S + ++ VD G Sbjct: 234 AVLFLVSGQAGHITMHNLCVDGG 256
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 34.3 bits (78), Expect = 0.001 Identities = 45/357 (12%), Positives = 100/357 (28%), Gaps = 46/357 (12%) Query: 108 ENAINSLNNEIHHINQEIDKQNQAISNLNQEIANLNNEINALKNAIKQEQEKLNALELET 167 + + E + + + + L L E++ K +++ + L+ + Sbjct: 56 QERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKI 115 Query: 168 SNKNQIEESLKKLEKLKEELKRLKKKSKWKKQFNFLTDNSSNKEAKQQRALQASQEHAAF 227 +E LEK E + EA++ Sbjct: 116 QE---LEARKADLEKALEGAMNFSTA---------DSAKIKTLEAEKAALAARKA----- 158 Query: 228 LNFFLTDPYAILPKGFIYEYHNPGKETYNALNAPNNMDGINNQFKVNALNQVLDNSYQKF 287 E G ++ ++ + + A L+ + + Sbjct: 159 ----------------DLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGA 202 Query: 288 LPGNDSYNALGSIEQVKALKFYDLVLNYHPESENTQSALFFKQISQYAKGLRLKILTAKT 347 + N S I+ ++A K E + F S K L + + Sbjct: 203 M--NFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEA 260 Query: 348 SKKNLKRIEELEKTIKQEQERLNDKDLNALTQDLQKEQENALKFKESIKAKQNYINALKN 407 + L++ E + + L + + + + +L+ Sbjct: 261 RQAELEKALE----GAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRR 316 Query: 408 AINQKEHAKNPIEQERQNQQNAKREKEQERQNQQN-------AKREKEQERQNLNNE 457 ++ AK +E E Q + + E RQ+ + AK++ E E Q L + Sbjct: 317 DLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQ 373 Score = 29.3 bits (65), Expect = 0.049 Identities = 17/137 (12%), Positives = 34/137 (24%) Query: 335 AKGLRLKILTAKTSKKNLKRIEELEKTIKQEQERLNDKDLNALTQDLQKEQENALKFKES 394 L + A + + K AL + ++ K K Sbjct: 192 QAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTL 251 Query: 395 IKAKQNYINALKNAINQKEHAKNPIEQERQNQQNAKREKEQERQNQQNAKREKEQERQNL 454 K E A N + + + EK + + + + + N Sbjct: 252 EAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANR 311 Query: 455 NNEINAIGNERLTIKEL 471 + + R K+L Sbjct: 312 QSLRRDLDASREAKKQL 328
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 90.7 bits (225), Expect = 2e-23 Identities = 37/224 (16%), Positives = 75/224 (33%), Gaps = 29/224 (12%) Query: 131 ESFKKDELDLSSVFEIQRKNTQMAYRLAIGGLIGVISLSVALAFLMPLKQIEPYFVDFAN 190 F++ ++ ++A+ +A + VA+A L PLK +EPY + Sbjct: 12 AYFEEAASWERDKLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDR 71 Query: 191 SDKHFAVVQ--KADTKVDYGEAFLRNLVGSYIMGRETINHIDDKIRLNETIREQSSDEVW 248 + ++ D + Y EA + + +Y+ RE + + + S+ Sbjct: 72 NTGEASIAAKLHGDATITYDEAVRKYFLATYVRYREGWIAAAREEYF-DAVMVMSARPEQ 130 Query: 249 KTLEQLVSGKG-----SIYSKSNMDREIKIINISIYKQGKQQNIAVADIVAKVFDKGYLI 303 + +I + D ++I +S + VA+V+ + Sbjct: 131 DRWSRFYKTDNPQSPQNILANRT-DVFVEIKRVSF----------LGGNVAQVY---FTK 176 Query: 304 SEKRYKVSLIYHFKPLIQFDYSSMP-------KNPTGFIVDKYS 340 S I++ P KNP G+ V+ Y Sbjct: 177 ESVTGSNSTKTDAVATIKYKVDGTPSKEVDRFKNPLGYQVESYR 220
>cloacin#Cloacin signature. Length = 551 Score = 37.0 bits (85), Expect = 3e-04 Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 5/91 (5%) Query: 130 SSKNGKGFSGSGASGMGYASGYGDTGNNTSSNGSNGSSMSGTSGTNGSRGANGSNGTNGA 189 S +G+G + S G +G G TG S+GS S + G G +GS G Sbjct: 2 SGGDGRGHNTGAHSTSGNING-GPTGLGVGGGASDGSGWSSENNPWG--GGSGSGIHWGG 58 Query: 190 NGYQGVGSNPFPPIAGSGSGSSGSSNSDYTP 220 G G +G GSG+ G+ ++ P Sbjct: 59 GSGHGNGGGNGN--SGGGSGTGGNLSAVAAP 87 Score = 35.5 bits (81), Expect = 7e-04 Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 2/110 (1%) Query: 149 SGYGDTGNNTSSNGSNGSSMSGTSGTNGSRGANGSNGTNGANGYQGVGSNPFPPIAGSGS 208 SG G+NT ++ ++G+ G +G GA+ +G + N G GS G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 209 GSSGSSNSDYTPFTSSGGGMGGGFIPFPYS-PGLQN-GSGANGINGTNGA 256 +G N + + +GG + P + P L G+G ++ + GA Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGA 111 Score = 34.3 bits (78), Expect = 0.002 Identities = 29/107 (27%), Positives = 40/107 (37%), Gaps = 7/107 (6%) Query: 111 GENDSEMSSAIGINKNTYTSSKNGKGFSGSGASGMGYASGYGDTGNNTSSN-GSNGSSMS 169 G N S++ IN G G G + G G++S G + S G S Sbjct: 8 GHNTGAHSTSGNIN-----GGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 170 GTSGTNGSRGANGSNGTNGANGYQGVGSNPFPPIAGSGSGSSGSSNS 216 G G NG+ G G N + V FP ++ G+G S S Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFG-FPALSTPGAGGLAVSIS 108 Score = 32.8 bits (74), Expect = 0.006 Identities = 31/102 (30%), Positives = 42/102 (41%), Gaps = 17/102 (16%) Query: 168 MSGTSGTNGSRGANGSNGT-NGANGYQGVGSNPFPPIAGSGSGSSGSSNSDYTPFTSSGG 226 MSG G + GA+ ++G NG GVG A GSG S S+ P+ GG Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGG-----ASDGSGWS----SENNPW---GG 48 Query: 227 GMGGGFIPFPYSPGLQNGSGANGINGTNGANGTNGANGSNSA 268 G G G + G G + G +GT G + +A Sbjct: 49 GSGSG----IHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAA 86
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 32.0 bits (73), Expect = 0.003 Identities = 24/152 (15%), Positives = 53/152 (34%), Gaps = 23/152 (15%) Query: 165 FLLLVLAQILLIGLILIIVLITLVETLTWLSLGFAVLPLVLFPQTNGM-LFSYLKKLISL 223 + VL + + L+ V + + GF + + P + K++ S+ Sbjct: 75 VVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPDIKKINPIEGAKRIFSI 134 Query: 224 TFYQPCIMVVSFLNFSMIESITLKIPTQAEIINGFYNKGHIVDQMIENGSNQAINNFQNA 283 S + F ++SI LK+ I+ KG++V + Sbjct: 135 K---------SLVEF--LKSI-LKV-VLLSILIWIIIKGNLVTLLQLPTCG--------- 172 Query: 284 MGAYTSVLGFFIILILGSVICFFLIKRVPDFI 315 + T +LG + ++ F++ + D+ Sbjct: 173 IECITPLLGQILRQLMVICTVGFVVISIADYA 204
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 31.4 bits (71), Expect = 0.007 Identities = 39/207 (18%), Positives = 82/207 (39%), Gaps = 1/207 (0%) Query: 23 VLIPLLILSGSLTPHQSFQLGIAVLMGYVFGSFLIQFLSPLMSLESIAKISFGLIALSFL 82 V +P + + P + + A ++ + G+ + LS + ++ + + + Sbjct: 35 VSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSV 94 Query: 83 ICYFDSIPFFWLWIWRFIAGVASSALMILVAPLSLPYVKENKRALVGGLIFSAVGVGSVF 142 I + F L + RFI G ++A LV + Y+ + R GLI S V +G Sbjct: 95 IGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGV 154 Query: 143 SGFVLPWISSYNIKWAWIFLGGSCLIAFILSLIGLKNHSLRKKSVKKEESAFKIPFHLWL 202 + I+ Y I W+++ L I + L+ L +R K + + + Sbjct: 155 GPAIGGMIAHY-IHWSYLLLIPMITIITVPFLMKLLKKEVRIKGHFDIKGIILMSVGIVF 213 Query: 203 LLISCALNAIGFLPHTLFWVDYLIRHL 229 ++ +I FL ++ ++H+ Sbjct: 214 FMLFTTSYSISFLIVSVLSFLIFVKHI 240
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.3 bits (65), Expect = 0.011 Identities = 9/18 (50%), Positives = 11/18 (61%) Query: 8 LILSGPSGAGKSTLTKYL 25 ++L G G GKSTL L Sbjct: 599 VVLEGTGGIGKSTLINTL 616
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 80.1 bits (197), Expect = 1e-17 Identities = 42/275 (15%), Positives = 97/275 (35%), Gaps = 15/275 (5%) Query: 182 PQEEEKEEVKETPQEEEKEEVKETPQEEEKPKDDEIQEGETLKDKEVSKELETQEELEIP 241 P+ E++ + +T + ++EI + + ++ Sbjct: 983 PEVEKRNQTVDTTNITTPNN-IQADVPSVPSNNEEIARVDEAPVPPPAPATPSETT---- 1037 Query: 242 KEETQEQAKEQESIKEETQEQAKEQESIKEETQEQAKEQEPIKEETQEIKEEKQEKTQDS 301 E E +K++ E+ ++ A E + E ++AK +T E+ + E + Sbjct: 1038 -ETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQ 1096 Query: 302 PSAQELEAMQELVKEIQENSNSQEDKKEAQESAETPQETPQENTETPQETEKQELETPK- 360 + + A E KE + +++ ++ + +++ + Q T PQ +E + Sbjct: 1097 TTETKETATVE--KEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVN 1154 Query: 361 -EEAQENAETPQETPQENTETPQETPQELETPQELET-PQELETPQELET----PQENAE 414 +E Q T +T Q ET Q + + T +E P+ P N+E Sbjct: 1155 IKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSE 1214 Query: 415 TPQETEKQELETPQEEKQELETPQESTETPQKETQ 449 + + + + + + +E S+ Sbjct: 1215 SSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVAL 1249 Score = 79.7 bits (196), Expect = 1e-17 Identities = 55/294 (18%), Positives = 93/294 (31%), Gaps = 12/294 (4%) Query: 140 ELENLGDLKALVQEEPNNEEQLLPTLNAQ--EEKEEVKEEVKETPQEEEKEEVKETPQEE 197 E+E N Q EE V E P E ET E Sbjct: 984 EVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAEN 1043 Query: 198 EKEEVKETPQEEEKPKDDEIQEGETLKDKEVSKELETQEELEIPKEETQEQAKEQESIKE 257 K+E K + E+ + Q E K+ + + + TQ ++ + E+ + Sbjct: 1044 SKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKET 1103 Query: 258 ETQEQAKEQESIKEETQEQAKEQEPIKEETQEIKEEKQEKTQDSPSAQELEAMQELVKEI 317 T E+ ++ + E+TQE K + K+E+ E Q +KE Sbjct: 1104 ATVEKEEKAKVETEKTQEVPKVTSQVSP-----KQEQSETVQPQAEPARENDPTVNIKEP 1158 Query: 318 QENSNSQED----KKEAQESAETPQETPQENTETPQETEKQELETPKE-EAQENAETPQE 372 Q +N+ D KE + E P E E TP + N+E+ + Sbjct: 1159 QSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNK 1218 Query: 373 TPQENTETPQETPQELETPQELETPQELETPQELETPQENAETPQETEKQELET 426 + + + P +E + +L + NA K + Sbjct: 1219 PKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTNAVLSDARAKAQFVA 1272 Score = 61.6 bits (149), Expect = 7e-12 Identities = 55/268 (20%), Positives = 103/268 (38%), Gaps = 30/268 (11%) Query: 293 EKQEKTQDSPSAQELEAMQELVKEIQENSNSQEDKKEAQESAETPQETPQENTETPQETE 352 EK+ +T D+ + +Q V + N+ EA P TP E TET E Sbjct: 986 EKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPA-TPSETTETVAENS 1044 Query: 353 KQELETPKEEAQENAETPQETPQENTETPQETPQELETPQELETPQELETPQELETPQEN 412 KQE +T ++ Q+ ET + + E +T + ++ E + Q ET Sbjct: 1045 KQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTET---- 1100 Query: 413 AETPQETEKQELETPQEEKQELET------PQESTETPQKETQ--------ELETQEDHY 458 +ET E +EEK ++ET P+ +++ K+ Q E + D Sbjct: 1101 ----KETATVE----KEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPT 1152 Query: 459 ESIEDIPEPVMAQAMGEALPFLSESVAKTSNNENDTETPKESVIKTPQEKEGSDKTSNPL 518 +I++ A E + S + E+ T SV++ P+ + Sbjct: 1153 VNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQP--- 1209 Query: 519 ELRLNLQDLLKSLNQESLKNLLENKTLS 546 + + K+ ++ S++++ N + Sbjct: 1210 TVNSESSNKPKNRHRRSVRSVPHNVEPA 1237 Score = 61.2 bits (148), Expect = 9e-12 Identities = 51/281 (18%), Positives = 85/281 (30%), Gaps = 40/281 (14%) Query: 240 IPKEETQEQAKEQESIKEETQEQAKEQESIKEETQEQAKEQEPIKEETQEIKEEKQEKTQ 299 I + + +E + + + ET E E + +T EK E+ Sbjct: 1003 IQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKT----VEKNEQDA 1058 Query: 300 DSPSAQELEAMQELVKEIQENSNSQEDKKEAQESAET-PQETPQENTETPQETEKQELET 358 +AQ E +E ++ N+ + E + E+ ET ET + T +E K E E Sbjct: 1059 TETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEK 1118 Query: 359 PKEEAQENAETPQETPQENTETPQETPQELETPQELETPQELETPQELETPQENAETPQE 418 +E + ++ + Q T PQ P P N + PQ Sbjct: 1119 TQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTV------------------NIKEPQS 1160 Query: 419 TEKQE-------------LETPQEEKQELETPQESTETPQKE----TQELETQEDHYESI 461 +E P E + T E P+ TQ E + Sbjct: 1161 QTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPK 1220 Query: 462 EDIPEPVMAQAMGEALPFLSESVAKTSNNENDTETPKESVI 502 V + S + T + T T +V+ Sbjct: 1221 NRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTNAVL 1261 Score = 52.4 bits (125), Expect = 5e-09 Identities = 35/240 (14%), Positives = 82/240 (34%), Gaps = 8/240 (3%) Query: 130 TQEVLETNWDELENLGDLKALVQEEPNNEEQLLPTLNAQEEKEEVKEEVKETPQEEEKEE 189 Q+ ET E + K+ V+ E +E + KET E++E+ Sbjct: 1055 EQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTET---KETATVEKEEK 1111 Query: 190 VKETPQEEEKEEVKETPQEEEKPKDDEIQEGETLKDKEVSKELETQEELEIPKEETQEQA 249 K E E+ +E P+ + + Q E ++E + ++ P+ +T A Sbjct: 1112 AK-----VETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTA 1166 Query: 250 KEQESIKEETQEQAKEQESIKEETQEQAKEQEPIKEETQEIKEEKQEKTQDSPSAQELEA 309 ++ KE + + + + P + ++ + P + + Sbjct: 1167 DTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRS 1226 Query: 310 MQELVKEIQENSNSQEDKKEAQESAETPQETPQENTETPQETEKQELETPKEEAQENAET 369 ++ + ++ + S D+ T T ++ + + L K +Q ++ Sbjct: 1227 VRSVPHNVEPATTSSNDRSTVALCDLTSTNTNAVLSDARAKAQFVALNVGKAVSQHISQL 1286
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 191 bits (486), Expect = 3e-63 Identities = 51/172 (29%), Positives = 84/172 (48%), Gaps = 18/172 (10%) Query: 56 GERPLFADRRAMKPNDLITIIVSEKASANYSSS----KDYKSASGGNSTPPRLTYNGLDE 111 G +PLF DRR D +TI++ E SA+ SSS +D K+ G ++ P L GL Sbjct: 61 GYQPLFEDRRPRNIGDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVPRYL--QGLFG 118 Query: 112 RKKQEAQYLDDKNNYNFTKSSNNTNFKGGGSQKKSEDLEIVLSARIIKVLENGNYFIYGN 171 + + + S F G G S L+ + +VL NGN + G Sbjct: 119 NARADVEA------------SGGNTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGE 166 Query: 172 KEVLVDGEKQILKVSGVIRPYDIERNNTIQSKFLADAKIEYTNLGHLSDSNK 223 K++ ++ + ++ SGV+ P I +NT+ S +ADA+IEY G+++++ Sbjct: 167 KQIAINQGTEFIRFSGVVNPRTISGSNTVPSTQVADARIEYVGNGYINEAQN 218
>TATBPROTEIN#Bacterial sec-independent translocation TatB protein signature. Length = 171 Score = 146 bits (369), Expect = 1e-47 Identities = 32/165 (19%), Positives = 74/165 (44%), Gaps = 11/165 (6%) Query: 1 MFGMGFFEILVVLVVAIIFLGPEKFPQAVVDMVKFFRAVKKTLNDAKDTLDKEINIEEIK 60 MF +GF E+L+V ++ ++ LGP++ P AV + + RA++ ++ L +E+ ++E + Sbjct: 1 MFDIGFSELLLVFIIGLVVLGPQRLPVAVKTVAGWIRALRSLATTVQNELTQELKLQEFQ 60 Query: 61 KETLEYQKLFENKVESLKGVKIEELEDAKVTAENEIKSIQDLMQDYQRSLETNTTPNHLS 120 + +K + +L +++ + AE+ +S + + S E +T N + Sbjct: 61 DSLKKVEKA---SLTNLTPELKASMDELRQAAESMKRSYVANDPE-KASDEAHTIHNPVV 116 Query: 121 -------EEVSNEEALNKEVSSDESPKEVKLATDNNTKEHDKEKE 158 E V+ A + S ++ P+ + + + Sbjct: 117 KDNEAAHEGVTPAAAQTQASSPEQKPETTPEPVVKPAADAEPKTA 161
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.4 bits (68), Expect = 0.008 Identities = 11/23 (47%), Positives = 14/23 (60%) Query: 30 VVALLGESGAGKSTILRILAGLE 52 V L G G GKST++ L GL+ Sbjct: 598 SVVLEGTGGIGKSTLINTLVGLD 620
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 196 bits (501), Expect = 3e-57 Identities = 115/461 (24%), Positives = 190/461 (41%), Gaps = 67/461 (14%) Query: 3 NIRNIAVIAHVDHGKTTLVDGLLSQSGTFSEREKVDE--RVMDSNDLERERGITILSKNT 60 I NI V+AHVD GKTTL + LL SG +E VD+ D+ LER+RGITI + T Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 61 AIYYKDTKINIIDTPGHADFGGEVERVLKMVDGVLLLVDAQEGVMPQTKFVVKKALSFGI 120 + +++TK+NIIDTPGH DF EV R L ++DG +LL+ A++GV QT+ + GI Sbjct: 62 SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGI 121 Query: 121 CPIVVVNKIDKPAAEPDRVVDEVFDLF---------VAMGASDKQLDFPV-----VYAAA 166 I +NKID+ + V ++ + V + + +F Sbjct: 122 PTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEG 181 Query: 167 RDGYAMKSLDDE----------------------------KKNL--EPLFETILEHVPSP 196 D K + + K N+ + L E I S Sbjct: 182 NDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSS 241 Query: 197 SGSVDEPLQMQIFTLDYDNYVGKIGIARVFNGSVKKNESVLLMKSDGSKENGRITKLIGF 256 + L ++F ++Y ++ R+++G + +SV + KE +IT++ Sbjct: 242 THRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRI----SEKEKIKITEMYTS 297 Query: 257 LGLARTEIENAYAGDIVAIAG--FNAMDV-GDSVVDPANPMPLDPMHLEEPTMSVYFAVN 313 + +I+ AY+G+IV + V GD+ + P +P P + + Sbjct: 298 INGELCKIDKAYSGEIVILQNEFLKLNSVLGDTKLLPQRERIENP----LPLLQTTVEPS 353 Query: 314 DSPLAGLEGKHVTANKLKDRLLKEMQTNIAMKCEEMGEGKFKVSGRGELQITILAENLRR 373 + + D LL+ + + +S G++Q+ + L+ Sbjct: 354 KPQQREMLLDALLEISDSDPLLRYYVDSAT--------HEIILSFLGKVQMEVTCALLQE 405 Query: 374 E-GFEFSISRPEVIIKEENGVKCEPFEHLVIDTPQDFSGAI 413 + E I P VI E K E H+ + P F +I Sbjct: 406 KYHVEIEIKEPTVIYMERPLKKAEYTIHIEVP-PNPFWASI 445 Score = 41.8 bits (98), Expect = 8e-06 Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 1/80 (1%) Query: 396 EPFEHLVIDTPQDFSGAIIERLGKRKAEMKAMNPMSDGYTRLEFEIPARGLIGYRSEFLT 455 EP+ I PQ++ K A + + + L EIPAR + YRS+ Sbjct: 537 EPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCIQEYRSDLTF 595 Query: 456 DTKGEGVMNHSFLEFRPFSG 475 T G V + +G Sbjct: 596 FTNGRSVCLTELKGYHVTTG 615
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 27.1 bits (60), Expect = 0.044 Identities = 9/15 (60%), Positives = 12/15 (80%) Query: 104 VKPKMFVFENVVGLM 118 +K KMFVFE++V L Sbjct: 240 IKKKMFVFEDIVLLD 254
>PF01206#SirA family protein Length = 76 Score = 26.3 bits (58), Expect = 0.005 Identities = 7/22 (31%), Positives = 12/22 (54%) Query: 19 SGKEIEVLSTRPEMRIDISSFC 40 +G+ + V++T P D SF Sbjct: 31 AGEVLYVMATDPGSVKDFESFS 52
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 1246 bits (3224), Expect = 0.0 Identities = 700/968 (72%), Positives = 794/968 (82%), Gaps = 45/968 (4%) Query: 43 FALGKKQSSDLEETLNQEPRSNVEQNIAT-TTNMQGLP-QARDLLDGRGNFPKFTLGDME 100 F KKQSSD++E +NQEP +V+ +IAT TT++QGLP +ARDLLD RGNF KFTLGDME Sbjct: 214 FIFDKKQSSDVKEAINQEPVPHVQPDIATTTTDIQGLPPEARDLLDERGNFSKFTLGDME 273 Query: 101 MLDVEGIADIDPNYKFSQLLVHSNVLSSMSMGSHSNMEPEKVSLLYGDNGGPEARHDWNA 160 MLDVEG+ADIDPNYKF+QLL+H+N LSS+ MGSH+ +EPEKVSLLYG NGGP ARHDWNA Sbjct: 274 MLDVEGVADIDPNYKFNQLLIHNNALSSVLMGSHNGIEPEKVSLLYGGNGGPGARHDWNA 333 Query: 161 TVGYKNQQGNNVATLINMHLKNGSGLVIAGNEGGINNPSFYLYKKDQLTGLEQALSQEEI 220 TVGYK+QQGNNVAT+IN+H+KNGSGLVIAG E GINNPSFYLYK+DQLTG ++ALSQEEI Sbjct: 334 TVGYKDQQGNNVATIINVHMKNGSGLVIAGGEKGINNPSFYLYKEDQLTGSQRALSQEEI 393 Query: 221 QNKVDFMEFLAQNSTKLDNLSEKEKEKFQTEIGNFQKDPKAYLDTLGSDHIAFVSKKDNK 280 QNK+DFMEFLAQN+ KLDNLSEKEKEKF+TEI +FQKD KAYLD LG+D IAFVSKKD K Sbjct: 394 QNKIDFMEFLAQNNAKLDNLSEKEKEKFRTEIKDFQKDSKAYLDALGNDRIAFVSKKDTK 453 Query: 281 HLALVTDFGNGELSYTLKDYGKEQDRALDRETKTTFQGNLKDDGVMFVNYSNFKYTNASK 340 H AL+T+FGNG+LSYTLKDYGK+ D+ALDRE T QG+LK DGVMFV+YSNFKYTNASK Sbjct: 454 HSALITEFGNGDLSYTLKDYGKKADKALDREKNVTLQGSLKHDGVMFVDYSNFKYTNASK 513 Query: 341 SPNEGIGATNGVSHLEANFSKVAIFNLPKLNGLVLSNHPVRQNLEDKVIAKGLSPKEANK 400 +PN+G+G TNGVSHLE F+KVAIFNLP LN L +++ VR+NLEDK+ KGLSP+EANK Sbjct: 514 NPNKGVGVTNGVSHLEVGFNKVAIFNLPDLNNLAITSF-VRRNLEDKLTTKGLSPQEANK 572 Query: 401 LVKDFLNSNKELVGKVSSFNKAVAEAKNTGNYGGVKKAQKDLEKSIRKREHLEKEVTKKI 460 L+KDFL+SNKELVGK +FNKAVA+AKNTGNY VKKAQKDLEKS+RKREHLEKEV KK+ Sbjct: 573 LIKDFLSSNKELVGKTLNFNKAVADAKNTGNYDEVKKAQKDLEKSLRKREHLEKEVEKKL 632 Query: 461 ESKSGNKNKMEAKAQANSQKDEIFALINQETYKEARNASYDQNLEGIRRELSDKIENINK 520 ESKSGNKNKMEAKAQANSQKDEIFALIN+E ++AR +Y QNL+GI+RELSDK+EN+NK Sbjct: 633 ESKSGNKNKMEAKAQANSQKDEIFALINKEANRDARAIAYAQNLKGIKRELSDKLENVNK 692 Query: 521 NLKDFNKSFDALKSGNNKDFSKVEETLKALKSSVKDLGINPEWISKVENLSTALNEFKNG 580 NLKDF+KSFD K+G NKDFSK EETLKALK SVKDLGINPEWISKVENL+ ALNEFKNG Sbjct: 693 NLKDFDKSFDEFKNGKNKDFSKAEETLKALKGSVKDLGINPEWISKVENLNAALNEFKNG 752 Query: 581 KNKDFSKVTQAKSDLENSIKDAIVNQEITDKVDNLNQAVLVAKTACNFSMLDQALADLKN 640 KNKDFSKVTQAKSDLENS+KD I+NQ++TDKVDNLNQAV VAK +FS ++QALADLKN Sbjct: 753 KNKDFSKVTQAKSDLENSVKDVIINQKVTDKVDNLNQAVSVAKATGDFSRVEQALADLKN 812 Query: 641 FSTDQ--KLDQKNESFNVGKDSDLQKSVKNRVNGTLVGNGLSKTEATTLTGKISGIKKEL 698 FS +Q + QKNES N K S++ +SVKN VNGTLVGNGLS+ EATTL+ S IKKEL Sbjct: 813 FSKEQLAQQAQKNESLNARKKSEIYQSVKNGVNGTLVGNGLSQAEATTLSKNFSDIKKEL 872 Query: 699 NEKFANFNNNNGLKNSAEPIYAQVNKKKTGQVTSPEGSIYDQVAKDVSAKIDKLNKIASA 758 N K NFNNNN EPIYA+VNKKK GQ S E IY QVAK V+AKID+LN+IAS Sbjct: 873 NAKLGNFNNNNNNGLKNEPIYAKVNKKKAGQAASLEEPIYAQVAKKVNAKIDRLNQIASG 932 Query: 759 SKGVDDFSGLGLGRLATRLDGREPIYVTIDDLGGPYTLKMHAGDDNLRSKVGLSRDQELT 818 V +G + LK H D+L SKVGLSR+QEL Sbjct: 933 LGVVGQAAG--------------------------FPLKRHDKVDDL-SKVGLSRNQELA 965 Query: 819 QKIGNLNQAVLEAKAGLFVNPQQMTHLEQMMHGLKDSTKKNVVNLWFEGAKKVPTSLQAK 878 QKI NLNQAV EAKAG F N LEQ + LKDSTK N +NLW E AKKVP SL AK Sbjct: 966 QKIDNLNQAVSEAKAGFFGN------LEQTIDKLKDSTKHNPMNLWVESAKKVPASLSAK 1019 Query: 879 LDNYATNSHIHINSNVKNGAINEKATGMLTQKNPEWLKLVNDKIVAHNVGSVPLSDYDKI 938 LDNYATNSHI INSN+KNGAINEKATGMLTQKNPEWLKLVNDKIVAHNVGSVPLS+YDKI Sbjct: 1020 LDNYATNSHIRINSNIKNGAINEKATGMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDKI 1079 Query: 939 GFNQKNMKGYSDSFKFSTKFNNAVKNIKSGFEQFLTDCFSTGSY---SPKKAEYGV---- 991 GFNQKNMK YSDSFKFSTK NNAVK+ SGF QFLT+ FST SY + + AE+G+ Sbjct: 1080 GFNQKNMKDYSDSFKFSTKLNNAVKDTNSGFTQFLTNAFSTASYYCLARENAEHGIKNVN 1139 Query: 992 TKSGFQKS 999 TK GFQKS Sbjct: 1140 TKGGFQKS 1147 Score = 38.9 bits (90), Expect = 1e-04 Identities = 24/48 (50%), Positives = 26/48 (54%), Gaps = 18/48 (37%) Query: 12 PDQTPIVDKND------------------NKAIKNPTKKNQFFSKLTD 41 PDQ PIVDKND NKAIKNPTKKNQ+FS + Sbjct: 41 PDQKPIVDKNDRDNRQAFEGISQLREEYSNKAIKNPTKKNQYFSDFIN 88
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 32.9 bits (75), Expect = 0.008 Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 18/88 (20%) Query: 19 EVQKRQFQKIEELKADMQKGVNPFFKVLFDGGNRLFGFPETFIYSSI-------FILFVT 71 + K K+ EL+ +G+ +D F+ SI F + Sbjct: 301 DTAKAIKAKLAELQPFFPQGMK--VLYPYD--------TTPFVQLSIHEVVKTLFEAIML 350 Query: 72 IVLSVILF-QAYEPVLIVAIVIVLVALG 98 + L + LF Q LI I + +V LG Sbjct: 351 VFLVMYLFLQNMRATLIPTIAVPVVLLG 378
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 31.7 bits (71), Expect = 0.004 Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 16/119 (13%) Query: 24 AINTALLPSEYKKLVALGFKKIKTLHQRHDDKEVTEEEKKFATNALREKLRNDRARAEQI 83 A+N AL+ +Y++ + K K + D KE+ E++K EK + + +A++ Sbjct: 112 AVNFALMTRDYQEFL----KTKKLIVDAPDPKELEEQKKAL------EKEKEAKEQAQKA 161 Query: 84 QKNIEAFEKKNNSSIQKKATKHKGLQELNETNANPLNGNPNSNSSTETKSNKDDNFDEM 142 QK+ K +++A L+ L +NP N + N N S K +++ D+M Sbjct: 162 QKD------KREKRKEERAKNRANLENLTNAMSNPQNLSNNKNLSELIKQQRENELDQM 214
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 119 bits (299), Expect = 4e-35 Identities = 44/205 (21%), Positives = 74/205 (36%), Gaps = 10/205 (4%) Query: 27 KLNKANRTFKRAFYL---SMALNIATVTSIVMMMPLKKTDIFVYGIDRYTGEFKIVKRSD 83 KL A R+ K A+ + + AL A V ++ + PLK + +V +DR TGE I + Sbjct: 24 KLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIAAKLH 83 Query: 84 A-RQIVNSEAVVDSATSKFVSLLFGYSKNSLRDRKDQLMQYCDVSFQTQAMRMFNENIRQ 142 I EAV + +V G+ + + D +M Q + R + + Q Sbjct: 84 GDATITYDEAVRKYFLATYVRYREGWIAAAREEYFDAVMVMSARPEQDRWSRFYKTDNPQ 143 Query: 143 FVDKVRA-EAIISSNIRREKVKNSPLTRLTFFITIKITPDTMENYEYITKKEVTIYYDFA 201 + A + I + +F +T T TI Y Sbjct: 144 SPQNILANRTDVFVEI-KRVSFLGGNVAQVYFTKESVTGSNS----TKTDAVATIKYKVD 198 Query: 202 SGNSSQENLIINPFGFKVFDIQITD 226 S + + NP G++V + Sbjct: 199 GTPSKEVDRFKNPLGYQVESYRADV 223
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 865 bits (2235), Expect = 0.0 Identities = 508/522 (97%), Positives = 513/522 (98%) Query: 1 MEQAFFKKIIGCFCLGYLFLSSVIEAATPEIKNFNRGRVKVVNKKIAYLGDEKPITIWTS 60 M QAFFKKI+GCFCLGYLFLSS IEA +IKNFNRGRVKVVNKKIAYLGDEKPITIWTS Sbjct: 1 MGQAFFKKIVGCFCLGYLFLSSAIEAVALDIKNFNRGRVKVVNKKIAYLGDEKPITIWTS 60 Query: 61 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR 120 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR Sbjct: 61 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR 120 Query: 121 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL 180 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL Sbjct: 121 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL 180 Query: 181 ENLTNAMSNPQNLSNNKNLSEFIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA 240 ENLTNAMSNPQNLSNNKNLSE IKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA Sbjct: 181 ENLTNAMSNPQNLSNNKNLSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA 240 Query: 241 EETIKQRAKDKINIKTDKPQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD 300 EE ++QRAKDKI+IKTDK QKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD Sbjct: 241 EEAVRQRAKDKISIKTDKSQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD 300 Query: 301 NFASAYLTVKLEYPQRHEVSSVIEGELKKREEAKRQRELIKQENLNTTAYINRVMMASNE 360 NFASAYLTVKLEYPQRHEVSSVIE ELKKREEAKRQRELIKQENLNTTAYINRVMMASNE Sbjct: 301 NFASAYLTVKLEYPQRHEVSSVIEEELKKREEAKRQRELIKQENLNTTAYINRVMMASNE 360 Query: 361 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF 420 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF Sbjct: 361 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF 420 Query: 421 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK 480 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK Sbjct: 421 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK 480 Query: 481 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK 522 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK Sbjct: 481 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK 522
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 40.0 bits (93), Expect = 1e-04 Identities = 43/262 (16%), Positives = 96/262 (36%), Gaps = 27/262 (10%) Query: 694 QARNEEERKSCEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKK 753 + NEE + E + P A ++ + + ++KT + ++ T + ++ Sbjct: 1011 PSNNEEIARVDEAPVPPPAPAT---PSETTETVAENSKQESKTVEKNEQDATETTAQNRE 1067 Query: 754 KLEEAKKSVKAYLDCVSRARNEKEKQECEKLLTPEAKKLLEQQALDCLKNAKTEAEKKRC 813 +EAK +VKA A++ E +E + T E + +++ AK E EK + Sbjct: 1068 VAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEE------KAKVETEKTQE 1121 Query: 814 VKDLPKDLQKKVLAKESLKVYLDCVSQAKTEAEKKECEKLLTPEAKKLLEE--AKESLKA 871 V KV ++ S K Q ++E + + E + ++E ++ + A Sbjct: 1122 V--------PKVTSQVSPK-------QEQSETVQPQAEPARENDPTVNIKEPQSQTNTTA 1166 Query: 872 YKDCVSRARNEKEKQECEKLLTPEAKKLLEQQALDCLKNAKTEAEKKRCVKDLPKDLQKK 931 + ++ + +Q + T + + + A T+ + PK+ ++ Sbjct: 1167 DTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTT-PATTQPTVNSESSNKPKNRHRR 1225 Query: 932 VLAKESLKVYLDCVSQAKTEAE 953 + V S Sbjct: 1226 SVRSVPHNVEPATTSSNDRSTV 1247 Score = 38.1 bits (88), Expect = 5e-04 Identities = 32/217 (14%), Positives = 65/217 (29%), Gaps = 14/217 (6%) Query: 1000 TPEARKLLEQEVKKSVKAYLDCVSQAKTEAEKKECEKLLTPEARKLLEQQALDCLKNAKT 1059 TP E K ++ Q TE + E ++ Q + ++ Sbjct: 1032 TPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSE 1091 Query: 1060 EAEKKRCVKDLPKDLQKKVLAKESVKAYLDCVSRARNEKEKQECEKLLTPEAKKLLEEAK 1119 E + ++K+ AK + + KQE + + P+A+ E Sbjct: 1092 TKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDP 1151 Query: 1120 ESLKAYKDCVSQARNEEERKACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQE 1179 + + +++ A + E +EQ V +S + E Sbjct: 1152 TVN------IKEPQSQTNTTADTEQPAKETSSNVEQPVTES--------TTVNTGNSVVE 1197 Query: 1180 CEKLLTPEARKFLAKQALSCLEKARNEEERKACLKNI 1216 + TP + S K R+ ++ N+ Sbjct: 1198 NPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNV 1234 Score = 34.7 bits (79), Expect = 0.005 Identities = 38/242 (15%), Positives = 91/242 (37%), Gaps = 6/242 (2%) Query: 909 KNAKTEAEKKRCVKDLP-KDLQKKVLAKESLKVYLDCVSQAKTEAEKKECEKLLTPEAKK 967 + + E+ V + P ++ + V + ++KT + ++ T + ++ Sbjct: 1008 PSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNRE 1067 Query: 968 LLEEAKESLKAYKDCLSQARNEEERKACEKLLTPEARKLLEQEVKKSVKAYLDCVSQAKT 1027 + +EAK ++KA A++ E K + T E + ++E K V + + Sbjct: 1068 VAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTS 1127 Query: 1028 EAE-KKECEKLLTPEARKLLEQQALDCLKNAK----TEAEKKRCVKDLPKDLQKKVLAKE 1082 + K+E + + P+A E +K + T A+ ++ K+ ++++ V Sbjct: 1128 QVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTEST 1187 Query: 1083 SVKAYLDCVSRARNEKEKQECEKLLTPEAKKLLEEAKESLKAYKDCVSQARNEEERKACE 1142 +V V N + + + K + S+++ V A ++ Sbjct: 1188 TVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTV 1247 Query: 1143 KL 1144 L Sbjct: 1248 AL 1249
>PF05211#Neuraminyllactose-binding hemagglutinin Length = 260 Score = 283 bits (726), Expect = 1e-98 Identities = 68/285 (23%), Positives = 126/285 (44%), Gaps = 43/285 (15%) Query: 1 MERSLIFKKVRVYSKMLVALGLSSVLVGCAMNPSAETKTQNDAKNQQPVQTHERMKTSSE 60 M+ + FK + K L+ + ++LVGC S N+ + H +SE Sbjct: 1 MKANNHFKDF-AWKKCLLGASVVALLVGC----SPHIIETNEVAL--KLNYH----PASE 49 Query: 61 YVTPLDFNYAIHIVQAPQNHHIVGILAPRIQVSDNL-KPYIDKFQDALANQIQTIFEKRG 119 V LD + +L P Q SDN+ K Y +KF++ +++ I + +G Sbjct: 50 KVQALD--------------EKILLLRPAFQYSDNIAKEYENKFKNQTTLKVEQILQNQG 95 Query: 120 YQVLRF--QDEKALSAQDKRKIFSVLDLKGWVGILEDLKMNLKDPNNPNL--DTLVDQ-- 173 Y+V+ D+ S K++ + + + G + + D K ++ + P L T +D+ Sbjct: 96 YKVINVDSSDKDDFSFAQKKEGYLAVAMNGEIVLRPDPKRTIQKKSEPGLLFSTGLDKME 155 Query: 174 ----SSGSVWFNFYEPESNRVVHDFAVEVGTF---QAMTYTYKHSNSGGLNSSNSIIHED 226 +G V EP S + F +++ + T S+SGGL S+ Sbjct: 156 GVLIPAGFVKVTILEPMSGESLDSFTMDLSELDIQEKFLKTTHSSHSGGLVSTMV----K 211 Query: 227 LEKNKEDAIHKILNRMYAVVMKKAVTELTEENIAKYREAIDKMKG 271 N DAI LN+++A +M++ +LT++N+ Y++ ++KG Sbjct: 212 GTDNSNDAIKSALNKIFANIMQEIDKKLTQKNLESYQKDAKELKG 256
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 1894 bits (4907), Expect = 0.0 Identities = 1058/1324 (79%), Positives = 1135/1324 (85%), Gaps = 56/1324 (4%) Query: 1 MEIQQTHRKINRPLVSLALVGLLVSITPQKSHAAFFTTVIIPAIVGGIATGAAVGTVSGL 60 MEIQQTHRKINRPLVSLALVG LVSITPQ+SHAAFFTTVIIPAIVGGIATGAAVGTVSGL Sbjct: 1 MEIQQTHRKINRPLVSLALVGALVSITPQQSHAAFFTTVIIPAIVGGIATGAAVGTVSGL 60 Query: 61 LSWGLKQAEEANKTPDKPDKVWRIQAGRGFDSFPNKEYDLYKSLLSSKIDGGWDWGNAAR 120 L WGLKQAEEANKTPDKPDKVWRIQAG+GF+ FPNKEYDLYKSLLSSKIDGGWDWGNAAR Sbjct: 61 LGWGLKQAEEANKTPDKPDKVWRIQAGKGFNEFPNKEYDLYKSLLSSKIDGGWDWGNAAR 120 Query: 121 HYWVKDGQWNKLEVDMQNAVGTYKLSGLINFTGGDLDVNMQKATLRLGQFNGNSFTSFKD 180 HYWVKDGQWNKLEVDMQNAVGTY LSGLINFTGGDLDVNMQKATLRLGQFNGNSFTS+KD Sbjct: 121 HYWVKDGQWNKLEVDMQNAVGTYNLSGLINFTGGDLDVNMQKATLRLGQFNGNSFTSYKD 180 Query: 181 GADRTTRVDFNAKNILIDNFLEINNRVGSGAGRKASSTVLTLQASEKITSRENAEISLYD 240 ADRTTRVDFNAKNILIDNFLEINNRVGSGAGRKASSTVLTLQASE ITSRENAEISLYD Sbjct: 181 SADRTTRVDFNAKNILIDNFLEINNRVGSGAGRKASSTVLTLQASEGITSRENAEISLYD 240 Query: 241 GATLNLVSSSNHSVDLWGKVWMGRLQYVGAYLAPSYSTINTSKVQGEMNFRHLAVGNQNA 300 GATLNL S+S V L G VWMGRLQYVGAYLAPSYSTINTSKV GE+NF HL VG+ NA Sbjct: 241 GATLNLASNS---VKLMGNVWMGRLQYVGAYLAPSYSTINTSKVTGEVNFNHLTVGDHNA 297 Query: 301 AQAGIIAGKKTNIGVLDLWQSAGLNIIAPPEGGYESKTKDNPQN---------------- 344 AQAGIIA KT+IG LDLWQSAGLNIIAPPEGGY+ K D P N Sbjct: 298 AQAGIIASNKTHIGTLDLWQSAGLNIIAPPEGGYKDKPNDKPSNTTQNNAKNDKQESSQN 357 Query: 345 -------NPKNDTQKTEIQPTQVVDGPFAGAKDTVVNIFRLNTNADGTIKIGGYKASLTT 397 NP N QKTEIQPTQV+DGPFAG K+TVVNI R+NTNADGTI++GG+KASLTT Sbjct: 358 NSNTQVINPPNSAQKTEIQPTQVIDGPFAGGKNTVVNINRINTNADGTIRVGGFKASLTT 417 Query: 398 NAANLNIGEGGVNLSNQASGRTLLVENLTGNITVEGALRVNNQVGGSAVAGSSANFEFKA 457 NAA+L+IG+GG+NLSNQASGR+LLVENLTGNITV+G LRVNNQVGG A+AGSSANFEFKA Sbjct: 418 NAAHLHIGKGGINLSNQASGRSLLVENLTGNITVDGPLRVNNQVGGYALAGSSANFEFKA 477 Query: 458 GQDTNNATATFNNDIQLGKAVNLRVDAHTAYFNGNISLGKSTNLKVNGHSAHFKNIDASK 517 G DT N TATFNNDI LG+ VNL+VDAHTA +FK ID Sbjct: 478 GTDTKNGTATFNNDISLGRFVNLKVDAHTA---------------------NFKGIDTG- 515 Query: 518 SDNGLNTSALDLSGVTDKVNINKLITAATNVSVKNFDIKELVVTTRVQSFGQYTIFGENI 577 + G NT LD SGVT+KVNINKLITA+TNV+VKNF+I ELVV T S G+YT F E+I Sbjct: 516 -NGGFNT--LDFSGVTNKVNINKLITASTNVAVKNFNINELVVKTNGVSVGEYTHFSEDI 572 Query: 578 GDQSRIGVVSLQTGYSPAYSGGVTFKSGKKLVIDEIYHAPWNYFDARNITDVEINKKILF 637 G QSRI V L+TG YSGGV FK G+KLVI++ Y+APWNYFDARNI +VEI K+ F Sbjct: 573 GSQSRINTVRLETGTRSIYSGGVKFKGGEKLVINDFYYAPWNYFDARNIKNVEITNKLAF 632 Query: 638 GAPGYIAGKTGLMFNNLTLNSNASMDYGKDLDLTIQGHFTNNQAVMNLFVQDRRVATLNA 697 G G G LMFNNLTL NA MDY + +LTIQG F NNQ +N V+ +VATLN Sbjct: 633 GPQGSPWGTAKLMFNNLTLGQNAVMDYSQFSNLTIQGDFVNNQGTINYLVRGGQVATLNV 692 Query: 698 GHQASMIFNNMIDNTTGFYKPLIKINDAQNLTKNKEHVLVKARNIDYNLVGVQGASYDNI 757 G+ A+M F+N +D+ TGFY+PL+KIN AQ+L KNKEHVL+KA+ I Y G A D+I Sbjct: 693 GNAAAMFFSNNVDSATGFYQPLMKINSAQDLIKNKEHVLLKAKIIGY---GNVSAGTDSI 749 Query: 758 SASNTNLMEQFKERLALYNNNNRMDICVVRNTDDIKACGMAIGNQAMVNNPDSYKYLIGK 817 + N NL+EQFKERLALYNNNNRMDICVVRNTDDIKACG AIGNQ+MVNNP++YKYL GK Sbjct: 750 A--NVNLIEQFKERLALYNNNNRMDICVVRNTDDIKACGTAIGNQSMVNNPENYKYLEGK 807 Query: 818 AWKNTGINKTADNTTIAVNLGNNSTPTSSESNTTKLPTNTTNKARFARYALIKNAPFAHY 877 AWKN GI+KTA+ + I+V+ NSTPT + NTT LPTNTTNK RFA YALIKNAPFA Y Sbjct: 808 AWKNIGISKTANGSKISVHYLGNSTPTENGGNTTNLPTNTTNKVRFASYALIKNAPFARY 867 Query: 878 SATPNLVAINKHDFGTIESVFELANRSKDIDTLYANSGAQGRDLLQTLLIDSHNAGYART 937 SATPNLVAIN+HDFGTIESVFELANRS DIDTLYANSGAQGRDLLQTLLIDSH+AGYART Sbjct: 868 SATPNLVAINQHDFGTIESVFELANRSNDIDTLYANSGAQGRDLLQTLLIDSHDAGYART 927 Query: 938 MIDATSANEITKQLNEANSALNNIASLDHKTSGLQTLSLSNAMILNSRLVNLSRRHTNNI 997 MIDATSANEITKQLN A + LNNIASL+HKTSGLQTLSLSNAMILNSRLVNLSRRHTN+I Sbjct: 928 MIDATSANEITKQLNTATTTLNNIASLEHKTSGLQTLSLSNAMILNSRLVNLSRRHTNHI 987 Query: 998 DSFAKRLQALKGQRFASLESAAEVLYQFAPKYEKPTNVWANAIGGASLNNGGNASLYGTS 1057 DSFAKRLQALK QRFASLESAAEVLYQFAPKYEKPTNVWANAIGG SLN+GGNASLYGTS Sbjct: 988 DSFAKRLQALKDQRFASLESAAEVLYQFAPKYEKPTNVWANAIGGTSLNSGGNASLYGTS 1047 Query: 1058 AGVDAYLNGEVEAIVGGFGSYGYSSFSNQANSLNSGANNANFGVYSRIFANQHEFDFEAQ 1117 AGVDAYLNGEVEAIVGGFGSYGYSSFSNQANSLNSGANN NFGVYSRIFANQHEFDFEAQ Sbjct: 1048 AGVDAYLNGEVEAIVGGFGSYGYSSFSNQANSLNSGANNTNFGVYSRIFANQHEFDFEAQ 1107 Query: 1118 GAVGSDQSSLNFKSALLRDLNQSYNYLAYSAAARASYGYDFAFFRNALVLKPSVGVSYNH 1177 GA+GSDQSSLNFKSALLRDLNQSYNYLAYSAA RASYGYDFAFFRNALVLKPSVGVSYNH Sbjct: 1108 GALGSDQSSLNFKSALLRDLNQSYNYLAYSAATRASYGYDFAFFRNALVLKPSVGVSYNH 1167 Query: 1178 LGSTNFESNSTHKAALKNGASSQHLFNASANVEARYYYGDTSYFYMNAGVLQEFAQLGSN 1237 LGSTNF+SNS K ALKNGASSQHLFNASANVEARYYYGDTSYFYMNAGVLQEFA GS+ Sbjct: 1168 LGSTNFKSNSNQKVALKNGASSQHLFNASANVEARYYYGDTSYFYMNAGVLQEFANFGSS 1227 Query: 1238 NAASLNTFKVNVARNPLNTHARVMMGGELQLAKEVFLNLGFIYLHNLISNASHFASNLGM 1297 NA SLNTFKVN RNPLNTHARVMMGGEL+LAKEVFLNLGF+YLHNLISN HFASNLGM Sbjct: 1228 NAVSLNTFKVNATRNPLNTHARVMMGGELKLAKEVFLNLGFVYLHNLISNIGHFASNLGM 1287 Query: 1298 RYSF 1301 RYSF Sbjct: 1288 RYSF 1291
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 86.6 bits (214), Expect = 3e-22 Identities = 59/247 (23%), Positives = 110/247 (44%), Gaps = 12/247 (4%) Query: 1 MGEKKESQKVAVITGASSGIGLECALMLLDQGYKVYALSRHATLCVALNHALC------E 54 M K K+A ITGA+ GIG A L QG + A+ + + +L E Sbjct: 1 MNAKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAE 60 Query: 55 SIDVDVSDSDALKEAFSNISAKEDHCDVLINSAGYGVFGSVEDTPIDEVKKQFGVNFFAL 114 + DV DS A+ E + I + D+L+N AG G + +E + F VN + Sbjct: 61 AFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGV 120 Query: 115 CEVVQFCLPLLKNKPHSKIFNLSSIAGRVSMLFLGHYSASKHALEAYSDALRLELKPFNV 174 + + ++ I + S V + Y++SK A ++ L LEL +N+ Sbjct: 121 FNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNI 180 Query: 175 QVCLIEPGPVKSNWEKTAFSVENFESENSLYALEVNAAKSFYSGVYQKALSAKA-VAQKI 233 + ++ PG +++ + + ++ EN + + + ++F +G+ K L+ + +A + Sbjct: 181 RCNIVSPGSTETDMQWSLWADENGAEQ-----VIKGSLETFKTGIPLKKLAKPSDIADAV 235 Query: 234 VFLAMSQ 240 +FL Q Sbjct: 236 LFLVSGQ 242
>SECA#SecA protein signature. Length = 901 Score = 27.5 bits (61), Expect = 0.015 Identities = 12/69 (17%), Positives = 32/69 (46%), Gaps = 12/69 (17%) Query: 4 SPTKKDYTQYSEKQLFNLINQLERKIKKMQNDRASFKEKMAKELEKRDQNFKDKIDALNE 63 S + + +++ N+IN +E +++K+ ++ EL+ + F+ +++ Sbjct: 12 SRNDRTLRRM--RKVVNIINAMEPEMEKLSDE----------ELKGKTAEFRARLEKGEV 59 Query: 64 LLQKISQVF 72 L I + F Sbjct: 60 LENLIPEAF 68
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 29.3 bits (65), Expect = 0.011 Identities = 13/33 (39%), Positives = 22/33 (66%) Query: 80 IENIFANEKEDTTYIITSYLNKEELFEKKPELK 112 + N+ A+EK D ++++ L+ E FEK PE+K Sbjct: 314 VGNLGASEKSDVFLVVSTLLHCIEGFEKNPEIK 346
>cloacin#Cloacin signature. Length = 551 Score = 38.5 bits (89), Expect = 1e-04 Identities = 24/94 (25%), Positives = 35/94 (37%), Gaps = 20/94 (21%) Query: 192 SGSNGANGNNSNHNAVGSGIDTDGVLGVDGVNGSSSSSGGSVGGYENNFTNHGSTNNNTG 251 SG +G N H+ G+ +NG + G G ++ + S NN G Sbjct: 2 SGGDGRGHNTGAHSTSGN------------INGGPTGLGVGGGA--SDGSGWSSENNPWG 47 Query: 252 GYDNFNNGSSSGGGLGNGGLFPIPFGNGDTNNSN 285 G G G GNGG GNG++ + Sbjct: 48 GGSGSGIHWGGGSGHGNGG------GNGNSGGGS 75 Score = 33.1 bits (75), Expect = 0.004 Identities = 31/111 (27%), Positives = 42/111 (37%), Gaps = 21/111 (18%) Query: 168 INGKDGANGSNGYGINGNDGINGSSGSNGANGNNSNHNAVGSGIDTDGVLGVDGVNGSSS 227 ++G DG G N + + ING G G S+ GSG ++ + G S Sbjct: 1 MSGGDG-RGHNTGAHSTSGNINGGPTGLGVGGGASD----GSGWSSE-----NNPWGGGS 50 Query: 228 SSGGSVGGYENNFTNHGSTNNNTGGYDNFNNGSSSGGGLGNGGL-FPIPFG 277 SG GG G N G N+G SG G + P+ FG Sbjct: 51 GSGIHWGG------GSGHGNGGGNG----NSGGGSGTGGNLSAVAAPVAFG 91
>SECA#SecA protein signature. Length = 901 Score = 31.4 bits (71), Expect = 0.009 Identities = 35/162 (21%), Positives = 62/162 (38%), Gaps = 21/162 (12%) Query: 61 EFETLQSIYSKELEE-LQQTITTDKTQQQLLEQDNIDFELQSALQNDLKDLEHLSDDLQN 119 + + + E+ + TI Q L E +I + + DL + Sbjct: 668 DVSDVSETINSIREDVFKATIDAYIPPQSLEEMWDIPGLQERLKNDFDLDLPIAEWLDKE 727 Query: 120 DKLNLE-IKEFINKQDDKNYQNKEQLNTETKENIRENSKN-----------SHLIPITNL 167 +L+ E ++E I Q + YQ KE++ E +R K HL + L Sbjct: 728 PELHEETLRERILAQSIEVYQRKEEVVGA--EMMRHFEKGVMLQTLDSLWKEHLAAMDYL 785 Query: 168 KNFLHNRRENFKVTQQDLPSEKQKKYSDKLFKKELLEYAKHN 209 + +H R Q+D P ++ K+ S +F +LE K+ Sbjct: 786 RQGIHLR----GYAQKD-PKQEYKRESFSMF-AAMLESLKYE 821
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 96.0 bits (239), Expect = 1e-25 Identities = 34/194 (17%), Positives = 73/194 (37%), Gaps = 16/194 (8%) Query: 101 WIFSSAVFFFALALIEAIIICLLPLKEKVPYLVTFSNATQNFAIVQR--ADKSIRANQAL 158 W+ + A A + A+ L PLK PY++T T +I + D +I ++A+ Sbjct: 36 WVVAGVAGALATAGVVAVAA-LTPLKTVEPYVITVDRNTGEASIAAKLHGDATITYDEAV 94 Query: 159 IRQLVASYVNNRE--NISNIKEQNEIAHETIRLQSAFEVWDFFEKLVSYEH-----SIYT 211 + +A+YV RE + +E + + + SA D + + ++ +I Sbjct: 95 RKYFLATYVRYREGWIAAAREEY----FDAVMVMSARPEQDRWSRFYKTDNPQSPQNILA 150 Query: 212 NINLTRKISIINIALISKTQANIEISAQLFNKEKLESEKRYRIIMTFEFEPIEIDTKSVP 271 N + I ++ + A + + + ++ + ++ + Sbjct: 151 N-RTDVFVEIKRVSFLGGNVAQVYFT-KESVTGSNSTKTDAVATIKYKVDGTPSKEVDRF 208 Query: 272 LNPTGFIVTGYDVT 285 NP G+ V Y Sbjct: 209 KNPLGYQVESYRAD 222
>TRNSINTIMINR#Translocated intimin receptor (Tir) signature. Length = 549 Score = 27.8 bits (61), Expect = 0.011 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Query: 14 ALETMAQATQNLVKQQEKIAEEVKGLSRLFAYWIDGHTCYEAGAGALVT 62 A+E+ AQA Q Q + EE++ LS Y + G GA VT Sbjct: 336 AVESNAQAQQRYEDQHARRQEELQ-LSSGIGYGLSSALIVAGGIGAGVT 383
>TYPE3IMQPROT#Type III secretion system inner membrane Q protein family signature. Length = 86 Score = 66.7 bits (163), Expect = 2e-18 Identities = 26/81 (32%), Positives = 40/81 (49%) Query: 3 SQLMKLAIETYKITLMISLPVLLAGLVVGLLVSIFQATTQINEMTLSFVPKILAVIGVLI 62 L+ + + L++S + ++GLLV +FQ TQ+ E TL F K+L V L Sbjct: 2 DDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLF 61 Query: 63 LTMPWMTNMLLDYTKTLIKLI 83 L W +LL Y + +I L Sbjct: 62 LLSGWYGEVLLSYGRQVIFLA 82
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 221 bits (565), Expect = 2e-77 Identities = 64/148 (43%), Positives = 94/148 (63%) Query: 4 IGIYPGTFDPVTNGHIDIIHRSSELFEKLIVAVAYSCAKNPMFSLKERLEMMQLATKGFK 63 IYPG+FDP+T GH+DII R LF+++ VAV + K PMFS++ERLE + A Sbjct: 2 NAIYPGSFDPITFGHLDIIERGCRLFDQVYVAVLRNPNKQPMFSVQERLEQIAKAIAHLP 61 Query: 64 NVECVAFEGLLANLAKEYHCKVLVRGLRVVSDFEYELQMGYANKSLNHELETLYFMPTLQ 123 N + +FEGL N A++ ++RGLRV+SDFE ELQM NK+L +LET++ + + Sbjct: 62 NAQVDSFEGLTVNYARQRQAGAILRGLRVLSDFELELQMANTNKTLASDLETVFLTTSTE 121 Query: 124 NAFISSSIVRSIIAHKGDASHLVPKEIH 151 +F+SSS+V+ + G+ H VP + Sbjct: 122 YSFLSSSLVKEVARFGGNVEHFVPSHVA 149
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 35.2 bits (81), Expect = 5e-04 Identities = 9/51 (17%), Positives = 24/51 (47%), Gaps = 4/51 (7%) Query: 125 TVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALEKHKKVVLV 175 +Y + ++ Q+D ++ G +G GK + A+ ++ ++ V + Sbjct: 148 EIYRVLARLMQTDLT----LMITGESGTGKELVARALHDYGKRRNGPFVAI 194
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 110 bits (277), Expect = 2e-28 Identities = 78/401 (19%), Positives = 152/401 (37%), Gaps = 29/401 (7%) Query: 54 KKPPESVLKNTLALDFCLNKFTKNAKILQANIVDNDRILEITGAKDLAYKSENFILRLEM 113 K P + + N N I + L + ++ ++ +N + L + Sbjct: 170 KLNPFDFSYDMIENFTKENSLQLNDNIFSKIFTGVSKTL----SSEICFRLKNNSIDLSL 225 Query: 114 IPKKANLMILDKEKCVIEA--FRFNDRVAKNDILGALPLN-TYEHQEKDLDFKGLLDILE 170 K + + I++ F FN N +G LN + K + + +LE Sbjct: 226 SNLKEIVEVCKDLFKEIQSNKFEFNCYTKNNSFVGFYCLNLMSKEDYKKIQYDSSSKLLE 285 Query: 171 KDFLSYQHKE-LEHKKNHIIKRLNMQKERLKEKLEKLEDPKNLQLEAKELQTQASLLLTY 229 + + + L+ K + + K + R +K + L + + + LL Sbjct: 286 NFYYAKDKSDRLKSKSSDLQKIVMNNINRCTKKDKILNNTLKKCEDKDIFKLYGELLTAN 345 Query: 230 QHLINKHESRVVLKDFED---KECAIEIDKSMPLNAFINKKFTLSKKKKQKSQFLYLEEE 286 + + K S + L ++ I +D++ + + + K K+ + + Sbjct: 346 IYALKKGLSHIELANYYSENYDTVKITLDENKTPSQNVQSYYKKYNKLKKSEEAANEQLL 405 Query: 287 NLKEKIAFKENQINYVKGAQEESVLE------------MFMPVKNSKIKRPMSGYEVLYY 334 +E++ + + + + A +E F + SK + + Sbjct: 406 QNEEELNYLYSVLTNINNADNYDEIEEIKKELIETGYIKFKKIYKSKKSKTSKPMHFISK 465 Query: 335 KDFKIGLGKNQKENIKL-LQDARANDLWMHVRDIPGSHLIVFCQKNTPKDEIIMELAKML 393 I +GKN +N L L+ A +D+W H ++IPGSH+IV + P + ++E A + Sbjct: 466 DGIDIYVGKNNIQNDYLTLKFANKHDIWFHTKNIPGSHVIVKNIMDIP-ESTLLEAANLA 524 Query: 394 IKMQKDVFNS-YEIDYTQRKFVKIIRGAN---VIYSKYRTI 430 K +S +DYT+ K VK GA VIYS +TI Sbjct: 525 AYYSKSQNSSNVPVDYTEVKNVKKPNGAKPGMVIYSTNQTI 565 Score = 33.3 bits (76), Expect = 0.002 Identities = 19/90 (21%), Positives = 47/90 (52%), Gaps = 5/90 (5%) Query: 48 PYIGLSKKPPESVLKNTLALDFCLNKFTKNAKILQANIVDNDRI--LEITGAKDLAYKSE 105 P I L+ + +K + L K+ NAKI+ + ++ DRI ++ +L + S Sbjct: 57 PRIHLTDLTKPNPIKAPMFCMV-LRKYISNAKIVDIHQINQDRIVVIDFESTDELGFNSI 115 Query: 106 NFILRLEMIPKKANLMILDK-EKCVIEAFR 134 + L +E++ + +N+ ++ K + ++++ + Sbjct: 116 -YSLIIEIMGRHSNMTLIRKRDNIIMDSIK 144
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 132 bits (333), Expect = 3e-40 Identities = 39/203 (19%), Positives = 75/203 (36%), Gaps = 6/203 (2%) Query: 40 QSVFRLERNRLKIAYKLLGLMSFIALILAIVLISVLPLQKTEHHF--VDFLNQDKHYAII 97 + K+A+ + G+ +A + + ++ PL+ E + VD + A Sbjct: 22 RDKLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIAAK 81 Query: 98 QRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQN 157 D +I+ +EA+ + + YV RE + ++ V + S+ R+ KT N Sbjct: 82 LHGDATITYDEAVRKYFLATYVRYREGWIAAAREEYFDAVMVMSARPEQDRWSRFYKTDN 141 Query: 158 SIYAQSHLEREVHI-VNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIA-LSYLFDT 215 Q+ L + V I +A V + + + K +A + Y D Sbjct: 142 PQSPQNILANRTDVFVEIKRVSFLGGNVAQVYFTKESVTGSNST--KTDAVATIKYKVDG 199 Query: 216 PDFDYASMPKNPTGFKITRYSIT 238 KNP G+++ Y Sbjct: 200 TPSKEVDRFKNPLGYQVESYRAD 222
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 32.1 bits (72), Expect = 0.003 Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 8/72 (11%) Query: 188 KEETKEEETITIGDSTNAMKIVKKDIQKGYRALKSSQ--RKWYCLGICSKKSKLSLMPEE 245 KE+ +EE+ I D A+ + Q + ALK + R + K+SK +MP E Sbjct: 365 KEKIREEKQKIILDQAKAL-----ETQYVHNALKRNPVPRNYNYYQAPEKRSK-HIMPSE 418 Query: 246 IFNDKQFTYFKF 257 IF+D FTYF F Sbjct: 419 IFDDGTFTYFGF 430
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 87.9 bits (218), Expect = 2e-21 Identities = 46/180 (25%), Positives = 72/180 (40%), Gaps = 19/180 (10%) Query: 7 LITGVTGQDGSYLAEYLLNLGYEVHGLKRRSSSINTSRIDHLYEDLHSEHKRRFFLHYGD 66 L+TG G G ++++ LL G++V G+ + + S E L F H D Sbjct: 4 LVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQP---GFQFHKID 60 Query: 67 MTDSSNLIHLIATTKPTEIYNLAAQSHVKVSFETPEYTANADGIGTLRILEAMRILGLEK 126 + D + L A+ ++ + V+ S E P A+++ G L ILE R ++ Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQ- 119 Query: 127 KTRFYQASTSELYGEVLETPQNENTPF-------NPRSPYAVAKMYAFYITKNYREAYNL 179 AS+S +YG N PF +P S YA K + Y Y L Sbjct: 120 --HLLYASSSSVYGL------NRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGL 171
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 51.3 bits (123), Expect = 2e-09 Identities = 53/346 (15%), Positives = 108/346 (31%), Gaps = 54/346 (15%) Query: 5 ILITGAYGMVGQNTALYLKKNKPDV-----------TLLTPKKSELY-----------LL 42 L+TGA G +G + + L + V L + EL L Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDLA 62 Query: 43 DKDNVQAYLKEYKPTGIIHCAGRVGGIVANMNDLSAYMVENLLMGLYLFSSALDLGVKKA 102 D++ + + R + ++ + AY NL L + ++ Sbjct: 63 DREGMTDLFASGHFERVFISPHR-LAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 103 INLASSCAYPKFAPNPLKESDLLNGSLEPTNEGYALAKLSVMKYCEYVSAEKGVFYKTLV 162 + +SS Y P D ++ + YA K + S G+ L Sbjct: 122 LYASSSSVYGLNRKMPFSTDDSVDHPVSL----YAATKKANELMAHTYSHLYGLPATGLR 177 Query: 163 PCNLYGEFDKFEEKIAHMIPGLIARMHTAKLKNEKEFAMWGDGTARREYLNAKDLARFIS 222 +YG + + P + T + K ++ G +R++ D+A I Sbjct: 178 FFTVYGPWGR---------PDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAII 228 Query: 223 LAYENIASIPS-----------------VMNVGSGVDYSIEEYYKMVAQVLDYKGAFVKD 265 + I + V N+G+ + +Y + + L + Sbjct: 229 RLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNML 288 Query: 266 LSKPVGMQQKLMDISK-QKALKWELEIPLEQGIKEAYEYYLKLLEV 310 +P + + D + + + E ++ G+K +Y +V Sbjct: 289 PLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDFYKV 334
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 150 bits (379), Expect = 2e-49 Identities = 39/140 (27%), Positives = 75/140 (53%), Gaps = 1/140 (0%) Query: 5 EILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEEFADMFDDLAERIVQLGHH 64 L ++ +L+ K+H FHW VKG FF +H+ EE+Y+ A+ D +AER++ +G Sbjct: 15 NSLNTQLSNWFLLYSKLHRFHWYVKGPHFFTLHEKFEELYDHAAETVDTIAERLLAIGGQ 74 Query: 65 PLVTLSEAIKLTRVKEETKTSFHSKDIFKEILEDYKHLEKEFKELSNTAEKEGDKVTVTY 124 P+ T+ E + + + + + ++ + ++ DYK + E K + AE+ D T Sbjct: 75 PVATVKEYTEHASITDGGNET-SASEMVQALVNDYKQISSESKFVIGLAEENQDNATADL 133 Query: 125 ADDQLAKLQKSIWMLQAHLA 144 + +++K +WML ++L Sbjct: 134 FVGLIEEVEKQVWMLSSYLG 153
>PF06580#Sensor histidine kinase Length = 349 Score = 29.8 bits (67), Expect = 0.015 Identities = 10/71 (14%), Positives = 25/71 (35%), Gaps = 13/71 (18%) Query: 281 IVLQNFLYNAIDAIEALEESEQ-GQVKIEAFIQNEFIVFTIIDNGKEVENKSALFEPFET 339 +++Q + N I + + Q G++ ++ N + + + G + Sbjct: 258 MLVQTLVENGI--KHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTK------- 308 Query: 340 TKLKGNGLGLA 350 + G GL Sbjct: 309 ---ESTGTGLQ 316
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 360 bits (925), Expect = e-126 Identities = 118/345 (34%), Positives = 191/345 (55%), Gaps = 26/345 (7%) Query: 19 AEKIGDIASVVGVRDNQLIGYGLVIGLNGTGDK-SGSKFTMQSISNMLESVNVKISADDI 77 +I DIAS+ RDNQLIGYGLV+GL GTGD S FT QS+ ML+++ + Sbjct: 28 TSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDSLRSSPFTEQSMRAMLQNLGITTQGGQS 87 Query: 78 KSKNVAAVMITASLPPFARQGDKIDIQISSIGDAKSIQGGTLVMTPLNAVDGNIYALAQG 137 +KN+AAVM+TA+LPPFA G ++D+ +SS+GDA S++GG L+MT L+ DG IYA+AQG Sbjct: 88 NAKNIAAVMVTANLPPFASPGSRVDVTVSSLGDATSLRGGNLIMTSLSGADGQIYAVAQG 147 Query: 138 AITSGN-----------SNNLLSANIINGATIEREVSYDLFHKNAMVLSLKNPNFKNAIQ 186 A+ SA + NGA IERE+ +VL L+NP+F A++ Sbjct: 148 ALIVNGFSAQGDAATLTQGVTTSARVPNGAIIERELPSKFKDSVNLVLQLRNPDFSTAVR 207 Query: 187 VQNTLNKV----FGNKVAIALDPKTIQITRPERFSMVEFLALVQEIPINYSAKNKIIVDE 242 V + +N +G+ +A D + I + +P + +A ++ + + K++++E Sbjct: 208 VADVVNAFARARYGDPIAEPRDSQEIAVQKPRVADLTRLMAEIENLTVETDTPAKVVINE 267 Query: 243 KSGTIVSGVDIMVHPIVVTSQDITLKITKEPLDN--------SKNAQDLDNNMSLDTAHN 294 ++GTIV G D+ + + V+ +T+++T+ P Q + M++ Sbjct: 268 RTGTIVIGADVRISRVAVSYGTLTVQVTESPQVIQPAPFSRGQTAVQPQTDIMAMQEGSK 327 Query: 295 TLSSNGKNITIAGVVKALQKIGVSAKGMVSILQALKKSGAISAEM 339 G ++ +V L IG+ A G+++ILQ +K +GA+ AE+ Sbjct: 328 VAIVEGPDLR--TLVAGLNSIGLKADGIIAILQGIKSAGALQAEL 370
>SECA#SecA protein signature. Length = 901 Score = 30.2 bits (68), Expect = 0.025 Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 5/95 (5%) Query: 231 DITQRFYVINEHERAEAIM-HLLDTQAPKKSI-VFTRTKKEADELHQFLASKNYKSTALH 288 D+ Y + E E+ +AI+ + + A + + V T + ++++ + L K L+ Sbjct: 422 DLPDLVY-MTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLN 480 Query: 289 GDMDQRDRRASIMAFKKNDADVLVATDVASRGLDI 323 + A+I+A A V +AT++A RG DI Sbjct: 481 AKFHANE--AAIVAQAGYPAAVTIATNMAGRGTDI 513
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 32.1 bits (73), Expect = 0.005 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 7/50 (14%) Query: 30 VAIVGESGSGKSSIANIIMRLNPR----FKPHNGEVLFETTNLLKESEAF 75 + I GESG+GK +A + R F N + L ESE F Sbjct: 163 LMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRD---LIESELF 209
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 27.5 bits (61), Expect = 0.028 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 8/59 (13%) Query: 32 FVIVAWLFRF--KSIAFSILITLLIILVDIWVYSDVRQFLL-DTASSPILLLVALLIKW 87 V VA ++A +L +L+ L I D+ + LL D + P+L LL Sbjct: 121 SVAVAMTLAPGWGTLAALLLTWVLVALTFI----DLDKMLLPDQLTLPLLWG-GLLFNL 174
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 552 bits (1424), Expect = 0.0 Identities = 178/582 (30%), Positives = 294/582 (50%), Gaps = 66/582 (11%) Query: 11 VDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFERLDSSDNALIL 70 +++ +L +I LI AG A++V ++L+ K DY LF L D I+ Sbjct: 13 LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWA-KTPDYR-----TLFSNLSDQDGGAIV 66 Query: 71 QHLQQNQIPYKILKDD-TILIPKDKVYEERITLASQGIPKTSKVGFEIFDTKDFGATDFD 129 L Q IPY+ I +P DKV+E R+ LA QG+PK VGFE+ D + FG + F Sbjct: 67 AQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKFGISQFS 126 Query: 130 QNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLKLKPDMKLS 189 + + RA+EGEL+RTIE+L P+ A VH+A+PK S+FV ++ PSASV + L+P L Sbjct: 127 EQVNYQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALD 186 Query: 190 PTQILGIKNLIAAAVPKLTTENVKIVNENGESIGEGDILENSKELALEQLRYKQNFENIL 249 QI + +L+++AV L NV +V+++G + + + + ++L QL++ + E+ + Sbjct: 187 EGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNT--SGRDLNDAQLKFANDVESRI 244 Query: 250 ENKIVNILAPIVGGKNKVVARVNAEFDFSQRKSTKETFDPNN-----VVRSEQNLEEKKE 304 + +I IL+PIVG N V A+V A+ DF+ ++ T+E + PN +RS Q ++ Sbjct: 245 QRRIEAILSPIVGNGN-VHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQV 303 Query: 305 GAPKKQVGGVPGVVSN-IGPVQGLKDNKEPEKYEKSQN---------------------- 341 GA GGVPG +SN P P + +QN Sbjct: 304 GAGYP--GGVPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRSTQRNE 361 Query: 342 TTNYEVGKTISEIKGEFGTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLKKINAL 401 T+NYEV +TI K G + RL+ AVVV+ K L DG + PL+ + +K+I L Sbjct: 362 TSNYEVDRTIRHTKMNVGDIERLSVAVVVNYK---TLADG----KPLPLTADQMKQIEDL 414 Query: 402 VKQAIGYNQNRGDDVAVSNFEFNPMAPMLDNATLSEKIMHKTQKILGSFTPLIKYILVFI 461 ++A+G++ RGD + V N F+ + T E + Q + +++LV + Sbjct: 415 TREAMGFSDKRGDTLNVVNSPFSAVDN-----TGGELPFWQQQSFIDQLLAAGRWLLVLV 469 Query: 462 VLFIFYKKVIVPFSERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNA 521 V +I ++K + P R +E ++ + E + E L+K L+++ +Q Sbjct: 470 VAWILWRKAVRPQLTRRVEEAKAAQEQAQVRQETEEAVEVRLSKDEQLQQRRANQ----- 524 Query: 522 TFSEEEVRYEIVLEKIRGTLKERPDEIAMLFKLLIKDEISSD 563 + E++ ++IR E D + L+I+ +S+D Sbjct: 525 -----RLGAEVMSQRIR----EMSDNDPRVVALVIRQWMSND 557
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 349 bits (897), Expect = e-122 Identities = 121/338 (35%), Positives = 208/338 (61%), Gaps = 4/338 (1%) Query: 8 KQKAQLDELSMSEKIAILLIQVGEDTTGEILRHLDIDSITEISKQIVQLNGTDKQIGAAV 67 K+ + L+ +K AILL+ +G + + ++ ++L + I ++ +I +L ++ V Sbjct: 7 KEILDVSALTGKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKDNV 66 Query: 68 LEEFFAIFQSNQYINTGGLEYARELLTRTLGSEEAKKVMDKLTKSLQTQKNFAYLGKIKP 127 L EF + + ++I GG++YARELL ++LG+++A +++ L +LQ+ + F ++ + P Sbjct: 67 LLEFKELMMAQEFIQKGGIDYARELLEKSLGTQKAVDIINNLGSALQS-RPFEFVRRADP 125 Query: 128 QQLADFIINEHPQTIALILAHMEAPNAAETLSYFPDEMKAEISIRMANLGEISPQVVKRV 187 + +FI EHPQTIALIL++++ A+ LS P E++ ++ R+A + SP+VV+ V Sbjct: 126 ANILNFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVREV 185 Query: 188 STVLENKLESLTSYK-IEVGGLRAVAEIFNRLGQKSAKTTLARIESVDNKLAGAIKEMMF 246 VLE KL SL+S GG+ V EI N +K+ K + +E D +LA IK+ MF Sbjct: 186 ERVLEKKLASLSSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEIKKKMF 245 Query: 247 TFEDISKLDNFAIREILKVADKKDLSLALKTSTQDLTDKFLNNMSSRAAEQFIEEMQYLG 306 FEDI LD+ +I+ +L+ D ++L+ ALK+ + +K NMS RAA E+M++LG Sbjct: 246 VFEDIVLLDDRSIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDMEFLG 305 Query: 307 AVKIKDVDVAQRKIIEIVQSLQEKG--VIQTGEEEDVI 342 + KDV+ +Q+KI+ +++ L+E+G VI G EEDV+ Sbjct: 306 PTRRKDVEESQQKIVSLIRKLEEQGEIVISRGGEEDVL 343 Score = 30.2 bits (68), Expect = 0.011 Identities = 20/102 (19%), Positives = 41/102 (40%), Gaps = 3/102 (2%) Query: 4 KLTPKQKAQLDELSMSEKIAILLIQVGEDTTGEILRHLDIDSITEISKQIVQLNGTDKQI 63 + P + + IA++L + IL L + T ++++I ++ T ++ Sbjct: 122 RADPANILNFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEV 181 Query: 64 GAA---VLEEFFAIFQSNQYINTGGLEYARELLTRTLGSEEA 102 VLE+ A S Y + GG++ E++ E Sbjct: 182 VREVERVLEKKLASLSSEDYTSAGGVDNVVEIINMADRKTEK 223
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 37.9 bits (87), Expect = 2e-05 Identities = 46/212 (21%), Positives = 96/212 (45%), Gaps = 17/212 (8%) Query: 45 PNPEEPLEKKAIENDLIDCLLKKTDELSSHLVKLQMQFEKAQEES-KALIENAKNDGYKI 103 P E + E +I+ + L L +LQMQ A E+ +A I + G+K Sbjct: 17 PPQAEFVPIVEPEETIIE---EAEPSLEQQLAQLQMQ---AHEQGYQAGIAEGRQQGHKQ 70 Query: 104 GFKEGEEKMRNELTHSVNEEKNQLLHAITALDEKMKKSEDHLMALE----KELSAIAIDI 159 G++EG + L + E K+Q + + + + + L AL+ L +A++ Sbjct: 71 GYQEG---LAQGLEQGLAEAKSQQAPIHARMQQLVSEFQTTLDALDSVIASRLMQMALEA 127 Query: 160 AKEVILKEVEDNSQKVALALAEELLKNVLDATDIHLKVNPLDYPYLNERLQNASKI---K 216 A++VI + ++ + + + L + L + L+V+P D +++ L + + Sbjct: 128 ARQVIGQTPTVDNSALIKQIQQLLQQEPLFSGKPQLRVHPDDLQRVDDMLGATLSLHGWR 187 Query: 217 LESNEAISKGGVMITSSNGNLDGNLMERFKTL 248 L + + GG +++ G+LD ++ R++ L Sbjct: 188 LRGDPTLHPGGCKVSADEGDLDASVATRWQEL 219
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 141 bits (356), Expect = 1e-37 Identities = 99/437 (22%), Positives = 174/437 (39%), Gaps = 85/437 (19%) Query: 3 NIRNFSIIAHIDHGKSTLADCLIAECNAIS---NREMTSQVMDTMDIEKERGITIKAQSV 59 I N ++AH+D GK+TL + L+ AI+ + + + D +E++RGITI+ Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 60 RLNYTLKGEDYVLNLIDTPGHVDFSYEVSRSLCSCEGALLVVDATQGVEAQTIANVYIAL 119 + E+ +N+IDTPGH+DF EV RSL +GA+L++ A GV+AQT + Sbjct: 62 SFQW----ENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALR 117 Query: 120 DNHLEILPVINKIDLPNANVLEVKQDIEDTIGIDCSSANEVSAKARLGIKD--------- 170 + + INKID ++ V QDI++ + + +V + + + Sbjct: 118 KMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDT 177 Query: 171 -------LLEKIITTIPAPSGDFNAPLKALIYD-------------------------SW 198 LLEK ++ + + ++ + Sbjct: 178 VIEGNDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNK 237 Query: 199 F--------------------DNYLGALALVRIMDGSINTEQEILVMGTGKKHGVLGLYY 238 F LA +R+ G ++ + + K + +Y Sbjct: 238 FYSSTHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKI-KITEMYT 296 Query: 239 PNPLKKIPTKSLECGEIGIV---SLGLKSVTDIAVGDTLTDAKNPTPKPIEGFMPAKPFV 295 + GEI I+ L L SV +GDT P + IE P + Sbjct: 297 SINGELCKIDKAYSGEIVILQNEFLKLNSV----LGDTKLL---PQRERIEN---PLPLL 346 Query: 296 FAGLYPIETDRFEDLREALLKLQLNDCALNFEPESSVALGFGFRVGFLGLLHMEVIKERL 355 + P + + E L +ALL++ +D L + +S+ + FLG + MEV L Sbjct: 347 QTTVEPSKPQQREMLLDALLEISDSDPLLRYYVDSATH---EIILSFLGKVQMEVTCALL 403 Query: 356 EREFGLNLIATAPTVVY 372 + ++ + + PTV+Y Sbjct: 404 QEKYHVEIEIKEPTVIY 420 Score = 31.0 bits (70), Expect = 0.015 Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 2/75 (2%) Query: 399 IKEPFVRATIITPSEFLGNLMQLLNNKRGIQEKMEYLNQSRVMLTYSLPSNEIVMDFYDK 458 + EP++ I P E+L + L + V+L+ +P+ I ++ Sbjct: 535 LLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCI-QEYRSD 592 Query: 459 LKSCTKGYASFDYEP 473 L T G + E Sbjct: 593 LTFFTNGRSVCLTEL 607
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 30.3 bits (68), Expect = 0.008 Identities = 9/40 (22%), Positives = 16/40 (40%) Query: 3 NGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITG 42 + A + L+ SNN+++ N G+ R I Sbjct: 2 SLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMA 41
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 40.6 bits (95), Expect = 9e-06 Identities = 58/315 (18%), Positives = 104/315 (33%), Gaps = 67/315 (21%) Query: 37 APYFAKEFTHTNDPTLALISAFLVFMLGFFMRPLGSLFFGKLGDKKGRKTSMVYSIILMA 96 P A +F T + +AF++ G+ +GKL D+ G K +++ II+ Sbjct: 37 LPDIANDFNKPPASTNWVNTAFMLTFSI------GTAVYGKLSDQLGIKRLLLFGIIINC 90 Query: 97 LGSFMLALLPTKEIVGEWAFLFLLLARLLQGFSVGGE------YGVVATYLSELGKNGKK 150 GS + VG F L++AR +QG G VVA Y+ + + Sbjct: 91 FGSVIGF-------VGHSFFSLLIMARFIQG--AGAAAFPALVMVVVARYIPKENRGKAF 141 Query: 151 GFYGSFQYVTLVGGQLLAIFSLFIVENIYTHEQISAFAWRYLFALGGILALLSLFLRNIM 210 G GS + +G + I I+ W YL + I + FL ++ Sbjct: 142 GLIGS---IVAMGEGVGPAIGGMIAHYIH---------WSYLLLIPMITIITVPFLMKLL 189 Query: 211 EETMDSQTTSKTTIKEETQRGSLKELLNHKKALM-------IVFGLTMGGSLCFYTFTVY 263 + + +K + K ++ + T + Sbjct: 190 K-----------------KEVRIKGHFDIKGIILMSVGIVFFMLFTTSYSISFLIVSVLS 232 Query: 264 LKIFLTNSSSFSPK-------ESSFIMLLALSYFIFLQPLCG---MLADKIKRTQMLMVF 313 IF+ + + ++ M+ L I + G M+ +K L Sbjct: 233 FLIFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTA 292 Query: 314 AIAGLIVTPVVFYGI 328 I +I+ P I Sbjct: 293 EIGSVIIFPGTMSVI 307
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 55.2 bits (133), Expect = 1e-10 Identities = 24/110 (21%), Positives = 44/110 (40%), Gaps = 6/110 (5%) Query: 194 ILIAEDSLSALKTLEKIVQTLELRYLAFPNGKELLDYLYEKEHYQQVGVVITDLEMPVIS 253 IL+A+D + L + + N L ++ +V+TD+ MP + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAA----GDGDLVVTDVVMPDEN 61 Query: 254 GFEVLKTIKADSRTEHLPVIINSSMSSDSNRQLAQSLEADGFVVKSNILE 303 F++L IK LPV++ S+ ++ A A ++ K L Sbjct: 62 AFDLLPRIK--KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLT 109
>LCRVANTIGEN#Low calcium response V antigen signature. Length = 326 Score = 30.4 bits (68), Expect = 0.001 Identities = 16/33 (48%), Positives = 20/33 (60%) Query: 16 KRKKLLTELAELEAEIKVSSERKSGFNISLSPS 48 R KL ELAEL AE+K+ S ++ N LS S Sbjct: 149 ARSKLREELAELTAELKIYSVIQAEINKHLSSS 181
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 279 bits (714), Expect = 5e-78 Identities = 107/407 (26%), Positives = 187/407 (45%), Gaps = 15/407 (3%) Query: 2784 SAGLNAIES-AGNNSLMWLNALFMAKGGNPLFAPYYLQDTPTEHIVTLMKDITGALGMLT 2842 S ++ + + +G L L + + +A + T I + T L + Sbjct: 894 SNDIDTLYANSGAQGRDLLQTLLI-DSHDAGYARTMIDATSANEITKQLNTATTTLNNIA 952 Query: 2843 NSNLKNNSTDVLQLNTYTQQMGRLAKLSNFASFDSTDFSERLSSLKNQRFADAIPNAMDV 2902 + K + L L+ RL LS + F++RL +LK+QRFA + +A +V Sbjct: 953 SLEHKTSGLQTLSLSNAMILNSRLVNLSRRHTNHIDSFAKRLQALKDQRFAS-LESAAEV 1011 Query: 2903 ILKYSQRDKLKNNLWATGVGGVSFVENGTGTLYGINVGYDRFIKG---VIVGGYAAYGYS 2959 + +++ + + N+WA +GG S G +LYG + G D ++ G IVGG+ +YGYS Sbjct: 1012 LYQFAPKYEKPTNVWANAIGGTSLNSGGNASLYGTSAGVDAYLNGEVEAIVGGFGSYGYS 1071 Query: 2960 GFYER--ITSSKSDNVDVGLYARAFIKKSELTFSVNETWGANKTQISSNDALLSMINQSY 3017 F + +S ++N + G+Y+R F + E F G++++ ++ ALL +NQSY Sbjct: 1072 SFSNQANSLNSGANNTNFGVYSRIFANQHEFDFEAQGALGSDQSSLNFKSALLRDLNQSY 1131 Query: 3018 QYSTWTTNARVNYGYDFMFKNKSIILKPQIGLRYYYIGMTGLEGVMNNALYNQFKANADP 3077 Y ++ R +YGYDF F +++LKP +G+ Y ++G T + + Sbjct: 1132 NYLAYSAATRASYGYDFAFFRNALVLKPSVGVSYNHLGSTNFKS----NSNQKVALKNGA 1187 Query: 3078 SKKSVLTIDFAFENRHYFNKNSYFYAIGGIGRDLLVRSMGDKLVRFIGDNTLSYRKGELY 3137 S + + E R+Y+ SYFY G+ ++ + V + R Sbjct: 1188 SSQHLFNASANVEARYYYGDTSYFYMNAGVLQEFANFGSSNA-VSLNTFKVNATRNP--L 1244 Query: 3138 NTFASITTGGEVRLFKSFYANAGVGARFGLDYKMINITGNIGMRLAF 3184 NT A + GGE++L K + N G L + + N+GMR +F Sbjct: 1245 NTHARVMMGGELKLAKEVFLNLGFVYLHNLISNIGHFASNLGMRYSF 1291
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 896 bits (2317), Expect = 0.0 Identities = 288/1040 (27%), Positives = 518/1040 (49%), Gaps = 42/1040 (4%) Query: 1 MYKTAINRPITTLMFALAIVFFGTMGFKKLSVALFPKIDMPTVVVTTTYPGASAEIIESK 60 M I RPI + A+ ++ G + +L VA +P I P V V+ YPGA A+ ++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VTDKIEEAVMGIDGIKKVTSTSSKNVSIVV-IEFELEKPNEEALNDVVNKISSVR-FDDS 118 VT IE+ + GID + ++STS S+ + + F+ + A V NK+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 119 NIKKPSINKFDTDSQAIISLFVSSSSVPAT--TLNDYAKNTIKPMLQKINGVGGVQLNGF 176 +++ I+ + S ++ S + T ++DY + +K L ++NGVG VQL G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG- 179 Query: 177 RERQIRIYADPTLMNKYNLTYADLFNTLKAENVEIDGGRIVNS------QRELSILINAN 230 + +RI+ D L+NKY LT D+ N LK +N +I G++ + Q SI+ Sbjct: 180 AQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 231 SYSVADVEKIQV-----GNHVRLGDIAKIEIGLEEDNTFASFKDKPGVILEIQKIAGANE 285 + + K+ + G+ VRL D+A++E+G E N A KP L I+ GAN Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 286 IEIVDRVYEALKHIQAISP-SYEIRPFLDTTGYIRTSIEDVKFDLVLGAILAVLVVFAFL 344 ++ + L +Q P ++ DTT +++ SI +V L +L LV++ FL Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 345 RNGTITLVSAISIPISIMGTFALIQWMGFSLNMLTMVALTLAIGIIIDDAIVVIENIHK- 403 +N TL+ I++P+ ++GTFA++ G+S+N LTM + LAIG+++DDAIVV+EN+ + Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 404 KLEMGMNKRKASYEGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQSFGITVALAIA 463 +E + ++A+ + + +I ALV I+ +L +VF+P+ G G ++ F IT+ A+A Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 464 LSYVVVVTIIPMVSSVVVNPRHS-------RFYVWSEPFFKALESYYTRLLQWVLNHKLI 516 LS +V + + P + + ++ P + F+ W F ++YT + +L Sbjct: 480 LSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539 Query: 517 IFIAVVLVFVGSLFVASKIGMEFMLKEDRGRFLVWLKAKPGVSIDY----MTQKSKIFQK 572 + L+ G + + ++ F+ +ED+G FL ++ G + + + Q + + K Sbjct: 540 YLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLK 599 Query: 573 AIEKHAEVEFTTLQVGY-GTAQNPFKAKIFVQLKPLKERKKERKLGQFELMSALKKELKS 631 + + E FT + G AQN FV LKP +ER + ++ K EL Sbjct: 600 NEKANVESVFTVNGFSFSGQAQNA--GMAFVSLKPWEERNGDENS-AEAVIHRAKMELGK 656 Query: 632 MPEAKGLESINLSEVSLIGGGGDSSPFQTFVFSHSQEAVDKSVANLKKFLLESPELKGKV 691 + + + N+ + G ++ F + + D + L + + + Sbjct: 657 IRDGF-VIPFNMPAIV---ELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASL 712 Query: 692 ESYHTSTSESQPQLQLKILRQNANKYGVSAQTIGSVVSSAFSGTSQASVFKQDGKEYDMI 751 S + E Q +L++ ++ A GVS I +S+A G + + F G+ + Sbjct: 713 VSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGG-TYVNDFIDRGRVKKLY 771 Query: 752 IRVPDNKRVSVEDIKRLQVRNKYDKLMFLDALVEITETKSPSSISRYNRQRSVTVLAEPN 811 ++ R+ ED+ +L VR+ +++ A + RYN S+ + E Sbjct: 772 VQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEA- 830 Query: 812 RNAGVSLGEILTQVSKNTKEWLVEGANYRFTGEADNAKETNGEFLIALATAFVLIYMILA 871 G S G+ + + +N L G Y +TG + + + + +A +FV++++ LA Sbjct: 831 -APGTSSGDAMALM-ENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLA 888 Query: 872 ALYESILEPFIIMVTMPLSFSGAFFALGLVHQPLSMFSMIGLILLIGMVGKNATLLIDVA 931 ALYES P +M+ +PL G A L +Q ++ M+GL+ IG+ KNA L+++ A Sbjct: 889 ALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFA 948 Query: 932 NE-ERKKGLNIKEAILFAGKTRLRPILMTTIAMVCGMLPLALASGDGAAMKSPIGIAMSG 990 + K+G + EA L A + RLRPILMT++A + G+LPLA+++G G+ ++ +GI + G Sbjct: 949 KDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMG 1008 Query: 991 GLMISMVLSLLIVPVFYRLL 1010 G++ + +L++ VPVF+ ++ Sbjct: 1009 GMVSATLLAIFFVPVFFVVI 1028
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 52.1 bits (125), Expect = 5e-10 Identities = 22/69 (31%), Positives = 34/69 (49%) Query: 40 STGIVDSIKVAEGSVVKKGDVLLLLYNQDKQAQSDSTEQQLIFAKKQYQRYSKIGGAVDK 99 IV I V EG V+KGDVLL L +A + T+ L+ A+ + RY + +++ Sbjct: 103 ENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIEL 162 Query: 100 NTLESYEFN 108 N L + Sbjct: 163 NKLPELKLP 171 Score = 31.0 bits (70), Expect = 0.004 Identities = 21/152 (13%), Positives = 48/152 (31%), Gaps = 25/152 (16%) Query: 70 QAQSDSTEQQLIFAKKQYQR--YSKIGGAVDKNTLESYEFNYRRLESDYAYSIAVLNKTI 127 +++ S +++ + ++ K+ D + + E ++ Sbjct: 279 ESEILSAKEEYQLVTQLFKNEILDKLRQTTDN--IGLLTLELAKNEER-------QQASV 329 Query: 128 LRAPFDGVIASKNIQVGEGVNANNTVLLRLVSHARKLVIE--FDSKYINAVKVG------ 179 +RAP + + GV L+ +V L + +K I + VG Sbjct: 330 IRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIK 389 Query: 180 -DTYTYSIDGDSNQHEAKITKIYP--TVDENT 208 + + Y+ G K+ I D+ Sbjct: 390 VEAFPYTRYGYL---VGKVKNINLDAIEDQRL 418
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.0 bits (65), Expect = 0.046 Identities = 16/113 (14%), Positives = 41/113 (36%), Gaps = 16/113 (14%) Query: 203 LARMIALQKKLEQIKTDIKRVTKLYDKGLTTIDDL-----QSLKAQGNLSEY--DILDMQ 255 LAR+ + K+ + + L K + + ++A L Y + ++ Sbjct: 220 LARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIE 279 Query: 256 FALEQNRLTLEYLTNLSVKNLKKTTIDAPNLQLRERQD-LVSLREQISALKYQ 307 + + + +T K +D +LR+ D + L +++ + + Sbjct: 280 SEILSAKEEYQLVTQ----LFKNEILD----KLRQTTDNIGLLTLELAKNEER 324
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.7 bits (66), Expect = 0.011 Identities = 13/95 (13%), Positives = 26/95 (27%), Gaps = 20/95 (21%) Query: 60 ILENDDEINLKKIAYIEFSKLAECVRPSGFYNQKAKRLIDLSENILKDFQSFENFKQEVT 119 L + + +A+ E + VR + +KA E+ Sbjct: 458 ALRSAPALA-GCVAFDELREQPVAVRAFPW--RKAPGP-------------LEDADVLRL 501 Query: 120 REWLLDQKGIGKESADAILCYVCAKEVMVVDKYSY 154 +++ G G+ SA + D Sbjct: 502 ADYVETTYGTGEASAQTTEQAINV----AADMNRV 532
>FLAGELLIN#Flagellin signature. Length = 507 Score = 244 bits (623), Expect = 1e-76 Identities = 127/518 (24%), Positives = 210/518 (40%), Gaps = 22/518 (4%) Query: 2 AFQVNTNINAMNAHVQSALTQNALKTSLERLSSGLRINKAADDASGMTVADSLRSQANSL 61 A +NTN ++ +Q++L +++ERLSSGLRIN A DDA+G +A+ S L Sbjct: 1 AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60 Query: 62 GQAIANTNDGMGIIQVADKAMDEQLKILDTVKVKATQAAQDGQTTESRKAIQSDIVRLIQ 121 QA N NDG+ I Q + A++E L V+ + QA + K+IQ +I + ++ Sbjct: 61 TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120 Query: 122 GLDNIGNTTTYNGQALLSGQFTNKEFQVGAYSNQSIKASIGSTTSDKIGQVRI-ATGALI 180 +D + N T +NG +LS + QVGA ++I + +G G Sbjct: 121 EIDRVSNQTQFNGVKVLSQDN-QMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKE 179 Query: 181 TASGDISLTFKQVDGVNDVTLESVKISSSAGTGIGVLAEVINKNSNQTGVIAHASVITTS 240 GD+ +FK V G + + + K +G V ++ V A +TT Sbjct: 180 ATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTD 239 Query: 241 DVAVQSGSLSNLTLNGIHLGNIADIKKNDSDGRLVAAINAVTSETGVEAYTDQNGRLNLR 300 D N + K A A+ + + + + Sbjct: 240 DAE-----------NNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTID 288 Query: 301 SLDGRGIEIKTDSTSNGPSALTMVNGGQDLTKGSTNYGRLSLTRLDAKSINV------VS 354 + G K +T NG V S + +N + Sbjct: 289 TKTGNDGNGKVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKT 348 Query: 355 ASDSQHLGFSAIGFGESQVAETTVNLRDVTGNFNANVKSASGANYNAVFASGNQSL---G 411 ++S L ++ TVN + T N + + +G + S Sbjct: 349 KNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINE 408 Query: 412 AGVTTLRGAMVVIDIAESAMKMLDKVRSDLGSVQNQMISTVNNISITQVNVKAAESQIRD 471 + + +SA+ +D VRS LG++QN+ S + N+ T N+ +A S+I D Sbjct: 409 DAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIED 468 Query: 472 VDFAEESANFNKNNILAQSGSYAMSQANTVQQNILRLL 509 D+A E +N +K IL Q+G+ ++QAN V QN+L LL Sbjct: 469 ADYATEVSNMSKAQILQQAGTSVLAQANQVPQNVLSLL 506
>OMS28PORIN#OMS28 porin signature. Length = 257 Score = 29.0 bits (64), Expect = 0.011 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 60 LFEKYPSVKDLALASLE--EVKEIIKSVSYSNNKSKHLINMAQKVVRDFKGVIPSTQKEL 117 + K P+ K+L L E +V+++ +++ S + AQKV+ G+ PS + ++ Sbjct: 164 MLNKSPNNKELELTKEEFAKVEQVKETLMASERALDETVQEAQKVLNMVNGLNPSNKDQV 223 Query: 118 MSLDGVGQKTANVV 131 ++ V + +NVV Sbjct: 224 LAKKDVAKAISNVV 237
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 99 bits (249), Expect = 2e-30 Identities = 25/77 (32%), Positives = 47/77 (61%) Query: 34 LICDYKNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKG 93 + D ++D+ + + ELG T++ + ++LR +GSV+ L AGE +D +NG +I +G Sbjct: 50 AMQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQG 109 Query: 94 EVMVFERNLAIRLNEIL 110 EV+V +R+ +I+ Sbjct: 110 EVVVVADKYGVRITDII 126
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 49.2 bits (117), Expect = 4e-09 Identities = 36/206 (17%), Positives = 71/206 (34%), Gaps = 14/206 (6%) Query: 104 PTPPKPIEKPKPKPKPKPEPKKPNHKHKALKKVEKVEEKKVVEEKKEEKKIVEQKVEQKK 163 P P +PI P P+ + VE E + + E +E +V +K + K Sbjct: 44 PAPAQPISVTMVAPADLEPPQAV--QPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKP 101 Query: 164 VEEKKPVKKEFDPNQLSFLPKEVAPPRQENNKGLDNQTRRDIDELYGEEFGDLGTAEKDF 223 + KPVKK P ++V P +N Sbjct: 102 KPKPKPVKKVEQP------KRDVKPVESRPASPFENTAPARPTSSTATAATSKPVTSVA- 154 Query: 224 IRNNLRDIGRITQKYLEYPQVAAYLGQDGTNAVEFYLHPNGDISDLKIIIGSEYKMLDDN 283 +++ +YP A L +G V+F + P+G + +++I+ M + Sbjct: 155 -----SGPRALSRNQPQYPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAKPANMFERE 209 Query: 284 TLKTIQIAYKDYPRPKTKTLIRIRVR 309 ++ + +P + ++ I + Sbjct: 210 VKNAMRRWRYEPGKPGSGIVVNILFK 235
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 30.1 bits (68), Expect = 0.005 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 4/64 (6%) Query: 88 LQSYSVMLFFNLLLLIDILGFLPFSIYHHFMASLIFSALFCGSLFLSSPLLGVIALVALS 147 L Y F L+L+ +LPFS S + + +L PLL V AL+A++ Sbjct: 45 LSDYYFEHFSKLMLIPAEQSYLPFSQ----ALSYVVDNVLLEFFYLCFPLLTVAALMAIA 100 Query: 148 SSLL 151 S ++ Sbjct: 101 SHVV 104
>PF07201#Hypersensitivity response secretion protein HrpJ Length = 293 Score = 29.8 bits (67), Expect = 0.022 Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 15/76 (19%) Query: 277 APENSKEKLIEELIANSQLIANEEEREKKLLAEKEKQ--------EAELAKY--KLKDLE 326 S + EE+ E +E L K E ++ +Y K+ +LE Sbjct: 44 GTLQSIADMAEEVTF-----VFSERKELSLDKRKLSDSQARVSDVEEQVNQYLSKVPELE 98 Query: 327 NQKKLKALEAELKKKN 342 ++ + L + L Sbjct: 99 QKQNVSELLSLLSNSP 114
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 26.6 bits (59), Expect = 0.021 Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 9/68 (13%) Query: 27 NLADKRYDSLGLIGAGVLCCVLSGAIGIVGII--FVAIGIFLS-------FSNINLVKLV 77 + A L+ LC L ++ I V G +S IN ++ Sbjct: 69 SQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPDIKKINPIEGA 128 Query: 78 EKLFKKQS 85 +++F +S Sbjct: 129 KRIFSIKS 136
>PF03944#delta endotoxin Length = 633 Score = 33.5 bits (76), Expect = 0.001 Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 3/94 (3%) Query: 68 LHHQEKLLNQCMLSQALKAMGDAELCVFLASVHDDLKGYEEFLSLCQKPHILAVSKIDTA 127 L E+ LNQ + + + A +AEL A+V + + + FL+ + L+++ Sbjct: 94 LRETERFLNQRLNTDTV-ARVNAELTGLQANVEEFNRQVDNFLNPNRNAVPLSITSSVNT 152 Query: 128 THKQVLQKLQEYQQHASQFLALVPLSAKKSQNLN 161 + L +L ++Q Q L L+PL A+ + NL+ Sbjct: 153 MQQLFLNRLPQFQMQGYQLL-LLPLFAQAA-NLH 184
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 29.0 bits (65), Expect = 0.042 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 3/36 (8%) Query: 48 TPKNILMIGSTGVGKTEIARRI---AKIMKLPFVKV 80 T +++ G +G GK +AR + K PFV + Sbjct: 159 TDLTLMITGESGTGKELVARALHDYGKRRNGPFVAI 194
>PF07520#Virulence protein SrfB Length = 1041 Score = 29.2 bits (65), Expect = 0.010 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 4/49 (8%) Query: 121 LEAEDNKIAAIGSGG---NFALSAARALDNFAHLEPRKLVEESLKIAGD 166 E+ ++A I GG + ++ R DN L P + E ++AGD Sbjct: 590 GESPSLRLACIDVGGGTTDLMVTTYRGEDNRV-LHPEQTFREGFRVAGD 637
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 427 bits (1100), Expect = e-147 Identities = 166/581 (28%), Positives = 279/581 (48%), Gaps = 80/581 (13%) Query: 10 RLILAIALSFLFIAIYSYFFQKPNKTTTPTTKQETANNHTATSPNNTPNAFSATQAIPQE 69 R +L IAL F+ I+ + Q N Q T T+ A A Q Sbjct: 5 RNLLVIALLFVSFMIWQAWEQDKNPQPQAQ--QTTQ----TTTTAAGSAADQGVPASGQG 58 Query: 70 NLLSTISFEHARIEIDSLG-RIKQVYLKDKKYLTPKQKGFLEHV--IHLFNPKAN----P 122 L+ ++ + + I++ G ++Q L P L L Sbjct: 59 KLI-SVKTDVLDLTINTRGGDVEQALL-------PAYPKELNSTQPFQLLETSPQFIYQA 110 Query: 123 QTPL--KELPLLAADKLKPLEVRFLDPTLNNKAFNTPYSASKTTLGPNEQLV--LTQDLG 178 Q+ L ++ P A+ +PL +N A G NE V D Sbjct: 111 QSGLTGRDGPDNPANGPRPL-------------YNVEKDAYVLAEGQNELQVPMTYTDAA 157 Query: 179 ALTIIKTLTFYDDLHYDLQIAFKSPN------------------KIIPSYVITNGYKPVA 220 T KT Y + + + N + P + + Sbjct: 158 GNTFTKTFVLKRG-DYAVNVNYNVQNAGEKPLEISSFGQLKQSITLPPHLDTGSSNFAL- 215 Query: 221 DLDSYTFSGALLENNDKKIEKIE---DKDAKEIKRFSNTLFLSSVDRYFTTLLFTKDPQG 277 +TF GA D+K EK + D + + S +++ + +YF T + G Sbjct: 216 ----HTFRGAAYSTPDEKYEKYKFDTIADNENLNISSKGGWVAMLQQYFATAWIPHN-DG 270 Query: 278 FEALIDSEIGTKNPLGFISLKNEA-----------NLHGYIGPKDYRSLKAISPMLTDVI 326 + +G N + I K++ N ++GP+ + A++P L + Sbjct: 271 TNNFYTANLG--NGIAAIGYKSQPVLVQPGQTGAMNSTLWVGPEIQDKMAAVAPHLDLTV 328 Query: 327 EYGLITFFAKGVFVLLDYLYQFVGNWGWAIILLTIIVRLILYPLSYKGMVSMQKLKEIAP 386 +YG + F ++ +F LL +++ FVGNWG++II++T IVR I+YPL+ SM K++ + P Sbjct: 329 DYGWLWFISQPLFKLLKWIHSFVGNWGFSIIIITFIVRGIMYPLTKAQYTSMAKMRMLQP 388 Query: 387 KMKELQEKYKGEPQKLQAHMMQLYKKHGANPLGGCLPLILQIPVFFAIYRVLYNAVELKS 446 K++ ++E+ + Q++ MM LYK NPLGGC PL++Q+P+F A+Y +L +VEL+ Sbjct: 389 KIQAMRERLGDDKQRISQEMMALYKAEKVNPLGGCFPLLIQMPIFLALYYMLMGSVELRQ 448 Query: 447 SEWILWIHDLSIMDPYFILPLLMGASMYWHQSVTPSSVTDPMQAKIFKFLPLLFTIFLIT 506 + + LWIHDLS DPY+ILP+LMG +M++ Q ++P++VTDPMQ KI F+P++FT+F + Sbjct: 449 APFALWIHDLSAQDPYYILPILMGVTMFFIQKMSPTTVTDPMQQKIMTFMPVIFTVFFLW 508 Query: 507 FPAGLVLYWTTNNILSVLQQLIINKVLENKKRAHAQNKKEN 547 FP+GLVLY+ +N+++++QQ +I + LE K+ H++ KK++ Sbjct: 509 FPSGLVLYYIVSNLVTIIQQQLIYRGLE-KRGLHSREKKKS 548
>TACYTOLYSIN#Bacterial thiol-activated pore-forming cytolysin signature. Length = 574 Score = 29.9 bits (67), Expect = 0.012 Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 5/89 (5%) Query: 39 SKGFLNIGKKEAIILVGVKESVKEIQEESVKETNTKEIHQSAEEKKQN-LEIETPQGEII 97 S + + KE + KE K + +E +T+EI+ N LE+ GE I Sbjct: 75 SNDMIKLAPKEMPLESAEKEEKKSEDNKKSEEDHTEEINDKIYSLNYNELEVLAKNGETI 134 Query: 98 TPKPPKKNLKEESHNGDKLHEIKQELKDL 126 PK+ +K+ DK I+++ K++ Sbjct: 135 ENFVPKEGVKK----ADKFIVIERKKKNI 159
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 34.4 bits (79), Expect = 0.001 Identities = 32/134 (23%), Positives = 53/134 (39%), Gaps = 25/134 (18%) Query: 216 LSIVGKPNAGKSSLLNAMLLEERA---LVSDIKGTTR-DTIEE-------------VIEL 258 + ++ +AGK++L ++L A L S KGTTR D + Sbjct: 6 IGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW 65 Query: 259 QGHKVRLIDTAGIRESTDKIERLGIEKSLKSLENCDIVLGVFDLSKPLEKEDFNLIDTLN 318 + KV +IDT G + ++ R SL L D + + ++ + L L Sbjct: 66 ENTKVNIIDTPGHMDFLAEVYR-----SLSVL---DGAILLISAKDGVQAQTRILFHALR 117 Query: 319 RAKKPCIVVLNKND 332 + P I +NK D Sbjct: 118 KMGIPTIFFINKID 131
>LIPOLPP20#LPP20 lipoprotein precursor signature. Length = 175 Score = 293 bits (752), Expect = e-105 Identities = 174/175 (99%), Positives = 175/175 (100%) Query: 1 MKNQVKKILGMSVIAAMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK 60 MKNQVKKILGMSV+AAMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK Sbjct: 1 MKNQVKKILGMSVVAAMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK 60 Query: 61 YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRS 120 YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRS Sbjct: 61 YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRS 120 Query: 121 ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK 175 ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK Sbjct: 121 ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK 175
>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE signature. Length = 103 Score = 75.5 bits (185), Expect = 2e-21 Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 1/77 (1%) Query: 34 EQKGGEFSKLLKQSINELNSTQEQSDKALADMATGQIK-DLHQAAIAIGKAETSMKLMLE 92 Q F+ L +++ ++ TQ + G+ L+ + KA SM++ ++ Sbjct: 27 PQPTISFAGQLHAALDRISDTQTAARTQAEKFTLGEPGVALNDVMTDMQKASVSMQMGIQ 86 Query: 93 VRNKAISAYKELLRTQI 109 VRNK ++AY+E++ Q+ Sbjct: 87 VRNKLVAAYQEVMSMQV 103
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 28.8 bits (64), Expect = 0.011 Identities = 10/38 (26%), Positives = 15/38 (39%) Query: 121 NVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAIGM 158 VN E +L + Y AN Q+A + I + Sbjct: 508 GVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 35.7 bits (82), Expect = 2e-04 Identities = 29/183 (15%), Positives = 78/183 (42%), Gaps = 10/183 (5%) Query: 108 NVELLKKLSPDLVVTFVG-NPKAVEHAKKFGISFLSFQETT--IAEAMQAMQ--AQAAVL 162 N+ELL ++ P +V G P A+ +F + +A A +++ A L Sbjct: 88 NLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNL 147 Query: 163 EIDASKKFAKMQETLDFIKERL-KDVKKKKGVELFHKAN--KISGHQAISSDILEKGGID 219 + A A+ ++ + +K R K + + + G ++ +IL++ GI Sbjct: 148 QSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGIP 207 Query: 220 N-FGLKYVKFGRADISVEKIVK-ENPEIIFIWWVSPLTPEDVLNNPKFSTIKAIKNKQVY 277 N + + +G +S++++ ++ +++ + + ++ P + + ++ + Sbjct: 208 NAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGRFQ 267 Query: 278 KLP 280 ++P Sbjct: 268 RVP 270
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 33.8 bits (77), Expect = 7e-04 Identities = 31/183 (16%), Positives = 74/183 (40%), Gaps = 10/183 (5%) Query: 106 NVELLKKLSPDLVVTFVGNPKAVEHAKKF--GISFLSFQEKTIAEVMEDID---AQAKAL 160 N+ELL ++ P +V G + E + G F K + A L Sbjct: 88 NLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNL 147 Query: 161 EIDASKKLAKMQETLDFIKERL-KDVKKKKGVELFHKAN--KISGHQALDSDILEKGGID 217 + A LA+ ++ + +K R K + + + G +L +IL++ GI Sbjct: 148 QSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGIP 207 Query: 218 N-FGLKYVKFGRADVSVEKIVK-ENPEIIFIWWISPLSPEDVLNNPKFSTIKAIKNKQVY 275 N + + +G VS++++ ++ +++ + + ++ P + + ++ + Sbjct: 208 NAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGRFQ 267 Query: 276 KLP 278 ++P Sbjct: 268 RVP 270
>TYPE3IMPPROT#Type III secretion system inner membrane P protein family signature. Length = 224 Score = 29.4 bits (66), Expect = 0.029 Identities = 9/23 (39%), Positives = 12/23 (52%) Query: 4 LRYKLLLFVFIGFWGLLVLNLFI 26 KL+LFV + W LL L + Sbjct: 195 TPIKLVLFVALDGWTLLSKGLIL 217