PredictBias

		>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase

		           signature.

		          Length = 261

		

		 Score = 76.2 bits (187), Expect = 1e-18

		 Identities = 59/250 (23%), Positives = 108/250 (43%), Gaps = 26/250 (10%)

		

		Query: 7   KSVLVLGGSRGIGAAIVRRFVAEGARVT-----FTYAGSAEAAQRLAGDTNSTAVLADSA 61

		           K   + G ++GIG A+ R   ++GA +              ++ +      + A  AD  

		Sbjct: 9   KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARH-AEAFPADVR 67

		

		Query: 62  DRDAVIDMVSR----SGPLDVLVVNSGIALFGDALDQDPDA-VDRLFRINVHAPYHAAVE 116

		           D  A+ ++ +R     GP+D+LV  +G+   G  +    D   +  F +N    ++A+  

		Sbjct: 68  DSAAIDEITARIEREMGPIDILVNVAGVLRPG-LIHSLSDEEWEATFSVNSTGVFNASRS 126

		

		Query: 117 AARQMPP--GGRIIVIGSVNGDRMPLPGMASYALSKSALQGLARGLARDFGPRGITINVV 174

		            ++ M     G I+ +GS N   +P   MA+YA SK+A     + L  +     I  N+V

		Sbjct: 127 VSKYMMDRRSGSIVTVGS-NPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185

		

		Query: 175 QPGPIDTDA--------NPENGPMKDLMHSF---MAIKRHGRADEVAGMVAWLAGPEASF 223

		            PG  +TD         N     +K  + +F   + +K+  +  ++A  V +L   +A  

		Sbjct: 186 SPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGH 245

		

		Query: 224 VTGAMHTIDG 233

		           +T     +DG

		Sbjct: 246 ITMHNLCVDG 255

		

		

		>HTHTETR#TetR bacterial regulatory protein HTH signature.

		          Length = 215

		

		 Score = 48.5 bits (115), Expect = 2e-09

		 Identities = 17/140 (12%), Positives = 41/140 (29%), Gaps = 4/140 (2%)

		

		Query: 7   RARGRPRAFDPDQAVATAQQLFHARGYDALSVADLTQALGINPPSFYAAFGSKAGLYARI 66

		           +   +         +  A +LF  +G  + S+ ++ +A G+   + Y  F  K+ L++ I

		Sbjct: 6   KQEAQETR---QHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI 62

		

		Query: 67  LDR-YAQTGAIPLPQILDTARPLADALADVLEQAACCYAADPAATGCLVLEGTRSNDAQA 125

		            +   +  G + L             L ++L         +      + +   +      

		Sbjct: 63  WELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGE 122

		

		Query: 126 REAACGFHVAAQELIRSHIA 145

		                             I 

		Sbjct: 123 MAVVQQAQRNLCLESYDRIE 142

		

		

		>CHLAMIDIAOM6#Chlamydia cysteine-rich outer membrane protein 6

		           signature.

		          Length = 547

		

		 Score = 33.5 bits (76), Expect = 0.005

		 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

		

		Query: 256 IHGISPVGAAHDTIAGSGSLRVPAIDRSSVFVSQAVPAAMTVGQSYPVEVT 306

		           +H     G   D+  G     V   D  +V ++QAVP   TVG  YP+E+T

		Sbjct: 75  VHESKATGPKQDSCFGR-MYTVKVNDDRNVEITQAVPEYATVGSPYPIEIT 124

		

		

		>PYOCINKILLER#Pyocin S killer protein signature.

		          Length = 617

		

		 Score = 25.5 bits (55), Expect = 0.029

		 Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 5/49 (10%)

		

		Query: 9   DQIQRVTERLAQRQARELLAQQRQAVKAK-----ETARREEMRRRQRLA 52

		           + I  +  R+    A +   +   A KA+     E  R+ E + RQ+ A

		Sbjct: 195 EAISSLQIRMNTLTAAKASIEAAAANKAREQAAAEAKRKAEEQARQQAA 243

		

		

		>GPOSANCHOR#Gram-positive coccus surface protein anchor signature.

		          Length = 539

		

		 Score = 30.4 bits (68), Expect = 0.029

		 Identities = 35/239 (14%), Positives = 67/239 (28%), Gaps = 16/239 (6%)

		

		Query: 262 QVTTAFLPDEVQLKRASSDEPMTLRDYALSLASELQRLTSNKGDKGTDGTPELRTRISQA 321

		           Q   A   D  +    + +          +L +E   L + K D        L   +  A

		Sbjct: 116 QELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKAD--------LEKALEGA 167

		

		Query: 322 EQDLQRIAVLYDRASSHHALQAASRTELKNLLSETDRD------LAKNKAVKRLQQMGAQ 375

		                  +       +  A   A + EL+  L              K    ++      +

		Sbjct: 168 MNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARK 227

		

		Query: 376 RGVELAKGNCPSCHQPVSDSLVVERISGSQMDLESNIGYLESQRRMLSRQLSALEEGLTE 435

		             +E A     +     S  +  + +   +  LE+    LE          +A    +  

		Sbjct: 228 ADLEKALEGAMNFSTADSAKI--KTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKT 285

		

		Query: 436 SEVSVRSFAQDLDRKRDRLTSLKEDLGSSAQQEKATLRRAIQLELEIGRLDALAQASER 494

		            E    +   +      +   L  +  S  +   A+     QLE E  +L+   + SE 

		Sbjct: 286 LEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEA 344

		

		

		>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase

		           signature.

		          Length = 572

		

		 Score = 29.4 bits (66), Expect = 0.041

		 Identities = 16/39 (41%), Positives = 20/39 (51%)

		

		Query: 23  PADLQPRLGLQAIKRTLHTTVLEEAQLRAATLASHYERL 61

		           P +L P LG +AI+  L    +   QLRA   AS Y  L

		Sbjct: 349 PKELNPFLGFRAIRLCLEKQDIFRTQLRALLRASTYGNL 387

		

		

		>BCTERIALGSPD#Bacterial general secretion pathway protein D

		           signature.

		          Length = 660

		

		 Score = 29.5 bits (66), Expect = 0.019

		 Identities = 21/139 (15%), Positives = 55/139 (39%), Gaps = 16/139 (11%)

		

		Query: 7   EKQNSLALAKAKSMQAVLSELQT---RREALQQQNSDLQMQQSNLSREVGKLRQSSRVLD 63

		           E+ N++ ++   + +  +  +     R++A Q     + ++ +  S  V  L   S  + 

		Sbjct: 235 ERTNAVLVSGEPNSRQRIIAMIKQLDRQQATQGNTKVIYLKYAKASDLVEVLTGISSTMQ 294

		

		Query: 64  QQLATLNGQNADQREQLVEGHKALLKGSLLYWARGVLDNRDILPFSGGDEALNRWVNKVP 123

		            +        A  +  +++ H      +L+     V    D++        L R + ++ 

		Sbjct: 295 SEKQAAKPVAALDKNIIIKAHGQT--NALI-----VTAAPDVM------NDLERVIAQLD 341

		

		Query: 124 LQPVQVVLDVIDKEISDQS 142

		           ++  QV+++ I  E+ D  

		Sbjct: 342 IRRPQVLVEAIIAEVQDAD 360

		

		

		>BICOMPNTOXIN#Staphylococcal bi-component toxin signature.

		          Length = 315

		

		 Score = 31.8 bits (72), Expect = 0.006

		 Identities = 11/44 (25%), Positives = 21/44 (47%)

		

		Query: 460 QIVYAPREQQDANDYSDMLGYTTVRKKNKSHTSGKQSSVSYSET 503

		            I Y P+ + ++ + S  LGY        + + G   S +YS++

		Sbjct: 122 LINYLPKNKIESTNVSQTLGYNIGGNFQSAPSLGGNGSFNYSKS 165

		

		

		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

		           signature.

		          Length = 478

		

		 Score =  124 bits (313), Expect = 2e-33

		 Identities = 69/423 (16%), Positives = 156/423 (36%), Gaps = 52/423 (12%)

		

		Query: 48  ALFLLLATFVLTASYSKREHVSGQIISTHGRVDIRSGTPGLILSTTLKPNALVKKGQVLA 107

		            +  +L+              +G++  +    +I+     ++    +K    V+KG VL 

		Sbjct: 69  VIAFILSVL---GQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLL 125

		

		Query: 108 ELSADITD---------------EAGR----------------SLSDETIKRALTRSEEL 136

		           +L+A   +               E  R                 L DE   + ++  E L

		Sbjct: 126 KLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVL 185

		

		Query: 137 TKEQLQTHDFS--GQRERELTRQVEETTGAMQEVARKISILEKKYAKNKELLKTIEPLLA 194

		               L    FS    ++ +    +++       V  +I+  E      K  L     LL 

		Sbjct: 186 RLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLH 245

		

		Query: 195 EKYVSKYTYLTYENALLDAEAEIQDARAQQSTLRNQ----RAALLGEITEIKTTASRQAS 250

		           ++ ++K+  L  EN  ++A  E++  ++Q   + ++    +          K     +  

		Sbjct: 246 KQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLR 305

		

		Query: 251 EIEREKSTIEDQVARAKSD-RLQTITSPLSGTVAAIYA-SQGQRIGTDSIIASITPSESV 308

		           +       +  ++A+ +   +   I +P+S  V  +   ++G  + T   +  I P +  

		Sbjct: 306 QTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDT 365

		

		Query: 309 FEAEILIPSRAIGHVNVGTEVLLNIAAFPKAKYGAIQGRIASLSTQTSPLGELERRYGRQ 368

		            E   L+ ++ IG +NVG   ++ + AFP  +YG + G++ +++         ++R G  

		Sbjct: 366 LEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIE----DQRLG-- 419

		

		Query: 369 SPIEPVYTAKVALPSQTIGVAQEAKSFLPGMEVDAELILEGRKIWEWMFDPFQTMGSRLT 428

		                V+   +++    +    +      GM V AE+    R +  ++  P +   +   

		Sbjct: 420 ----LVFNVIISIEENCLSTGNKNIPLSSGMAVTAEIKTGMRSVISYLLSPLEESVTESL 475

		

		Query: 429 GEK 431

		            E+

		Sbjct: 476 RER 478

		

		

		>PF05272#Virulence-associated E family protein

		          Length = 892

		

		 Score = 31.2 bits (70), Expect = 0.017

		 Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 11/65 (16%)

		

		Query: 515 KWIMSALQLRA-----PAGQVIAIVGNSGVGKTTLIRVLAGLEDLQVGDFLVNREDLRKV 569

		           K+I+     R           + + G  G+GK+TLI  L GL      DF  +       

		Sbjct: 578 KYILMGHVARVMEPGCKFDYSVVLEGTGGIGKSTLINTLVGL------DFFSDTHFDIGT 631

		

		Query: 570 GKSSY 574

		           GK SY

		Sbjct: 632 GKDSY 636

		

		

		>RTXTOXINC#Gram-negative bacterial RTX toxin-activating protein C

		           signature.

		          Length = 170

		

		 Score = 55.7 bits (134), Expect = 1e-12

		 Identities = 31/123 (25%), Positives = 44/123 (35%), Gaps = 21/123 (17%)

		

		Query: 24  KKFSIAAAYVWLW-------------------PAIRLGQLVTIEDEDGVWTGYALWAYLT 64

		           K   I     WLW                   PAI+  Q V +   D     Y  WA L+

		Sbjct: 5   KPLEILGHVSWLWASSPLHRNWPVSLFAINVLPAIQANQYVLLTR-DDYPVAYCSWANLS 63

		

		Query: 65  PETASHLVVQDPPFLPISDWNEGDQLWILDFVAMPGHHRRLAKALRDRVRPHFKQAHRLV 124

		            E     +  D   L   DW  GD+ W +D++A  G +  L K +R +      +A R+ 

		Sbjct: 64  LENEIKYL-NDVTSLVAEDWTSGDRKWFIDWIAPFGDNGALYKYMRKKFPDELFRAIRVD 122

		

		Query: 125 RDK 127

		              

		Sbjct: 123 PKT 125

		

		

		>SUBTILISIN#Subtilisin serine protease family (S8) signature.

		          Length = 326

		

		 Score =  170 bits (431), Expect = 4e-49

		 Identities = 89/343 (25%), Positives = 135/343 (39%), Gaps = 72/343 (20%)

		

		Query: 477 LHADAARTAYRARGQQIGWAVLDTGIAASHPHFFAKGERDTVVAQWDCTRRGAARRLTRA 536

		           + A A     R RG ++  AVLDTG  A HP   A+     ++   + T           

		Sbjct: 29  IQAPAVWNQTRGRGVKV--AVLDTGCDADHPDLKAR-----IIGGRNFTDDD-------- 73

		

		Query: 537 DGDAFARLDRHGHGTHIAGIIAGHSRAVIPDAQGNLGKPLEFAGMAPDTQLYGFKVLDDA 596

		           +GD     D +GHGTH+AG IA        +  G         G+AP+  L   KVL+  

		Sbjct: 74  EGDPEIFKDYNGHGTHVAGTIAA-----TENENG-------VVGVAPEADLLIIKVLNKQ 121

		

		Query: 597 GNGRDSWMIKAVQQVAAINERAGELVIHGVNLSLGGYFDPESYGCGFTPLCNELRRLWRQ 656

		           G+G+  W+I+ +              +  +++SLGG  D          L   +++    

		Sbjct: 122 GSGQYDWIIQGIYYAIEQK-------VDIISMSLGGPEDV-------PELHEAVKKAVAS 167

		

		Query: 657 GVLVVVAAGNEGLAWLMRNDGDAYPANMDLSISDPGNLEDAIVVGSVHKSSPHNYGVSYF 716

		            +LV+ AAGNEG     R D   YP   +          + I VG+++     +   S F

		Sbjct: 168 QILVMCAAGNEGDGD-DRTDELGYPGCYN----------EVISVGAINF----DRHASEF 212

		

		Query: 717 SSRGPTADGRGKPDVVAPGEKILSAYYDFDPKDPASLMVEMSGTSMAAPHVSGVLAGFLS 776

		           S+         + D+VAPGE ILS                 SGTSMA PHV+G LA    

		Sbjct: 213 SNSNN------EVDLVAPGEDILSTVPG-------GKYATFSGTSMATPHVAGALALIKQ 259

		

		Query: 777 ARREFIGF---PDRVKQLMLDTSTDLQRDRYVQGRGVPNLMRM 816

		                         +   ++  +  L     ++G G+  L  +

		Sbjct: 260 LANASFERDLTEPELYAQLIKRTIPLGNSPKMEGNGLLYLTAV 302

		

		

		>GPOSANCHOR#Gram-positive coccus surface protein anchor signature.

		          Length = 539

		

		 Score = 60.5 bits (146), Expect = 3e-11

		 Identities = 62/357 (17%), Positives = 125/357 (35%), Gaps = 20/357 (5%)

		

		Query: 150 SQIIEARPEDLRVYLEEAAG-ISKYKERRKETETRIRHTRENLDRLGDLREEITKQLAHL 208

		           +  +    + L+ + +E    +S  KE+ ++ +  +      +  L   + ++ K L   

		Sbjct: 73  NSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGA 132

		

		Query: 209 QRQARQAE-QYQALQEERRIKDAEWKALEY--RGLDGRLQGLREKLNQEETRLQQLIAEQ 265

		              +     + + L+ E+    A    LE    G          K+   E     L A Q

		Sbjct: 133 MNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQ 192

		

		Query: 266 RDAEARIETGRARREEAAEAVAKAQADVYQVGGALARIEQQIQHQRELSHRLHKARDEAQ 325

		            + E  +E         +  +   +A+   +    A +E+ ++     S          +

		Sbjct: 193 AELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLE 252

		

		Query: 326 SQLQELTQHISGDSARLAVLREAVDAAEPQLEQLREDHEFRQESLREAEARLADWQQRWE 385

		           ++   L           A L +A++ A           +  +      EA  AD + + +

		Sbjct: 253 AEKAALEARQ-------AELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQ 305

		

		Query: 386 THNRDTGEASRAGEVERTRVDYLDRQSLEAERRREALVNERAGL--DLDALAEAFEQIEL 443

		             N +     R  +  R     L+ +  + E + +     R  L  DLDA  EA +Q+E 

		Sbjct: 306 VLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEA 365

		

		Query: 444 RHETQKTSLDGLTEQVEARKHALGGLQEQQRSSQGELADVRKQAQAARGRLSSLETL 500

		            H         L EQ +  + +   L+    +S+     V K  + A  +L++LE L

		Sbjct: 366 EH-------QKLEEQNKISEASRQSLRRDLDASREAKKQVEKALEEANSKLAALEKL 415

		

		

		

		 Score = 45.1 bits (106), Expect = 2e-06

		 Identities = 31/269 (11%), Positives = 82/269 (30%)

		

		Query: 647 GAAKQGALLREREIQELRAQIETLQEREADLEQRLGSFREQLLAAEQQREDAQRQLYMAH 706

		              K          + L+   + L E  ++ +++L    + L     + ++ + +     

		Sbjct: 67  NTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLE 126

		

		Query: 707 RSVSELAGQLQSQQGKVDAARTRIERIENELSQLLETLDTSREQAREARAKLEDAVTLMG 766

		           +++        +   K+         +    + L + L+ +   +    AK++       

		Sbjct: 127 KALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKA 186

		

		Query: 767 DLQGTRQALENERRQLTDARDQARDAARGVRDAMHALALTLESQRTQITSLSQTLERMDS 826

		            L+  +  LE       +         + +     ALA         +           +

		Sbjct: 187 ALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSA 246

		

		Query: 827 QRGQLDTRLEGLVAQLSDGDSPVETLEHEHQAALSERVRTERVLSEARTMLESIDGELRS 886

		           +   L+     L A+ ++ +  +E   +   A  ++    E   +        ++ + + 

		Sbjct: 247 KIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQV 306

		

		Query: 887 YEQTRQQRDEQALAQRERISQRKLDQQAL 915

		               RQ       A RE   Q + + Q L

		Sbjct: 307 LNANRQSLRRDLDASREAKKQLEAEHQKL 335

		

		

		

		 Score = 40.8 bits (95), Expect = 3e-05

		 Identities = 36/190 (18%), Positives = 73/190 (38%), Gaps = 13/190 (6%)

		

		Query: 657 EREIQELRAQIETLQEREADLEQRLGSFREQLLAAEQQREDAQRQLYMAHRSVSELAGQL 716

		           E E   L A+   L++          +   ++   E ++   + +          L    

		Sbjct: 252 EAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANR 311

		

		Query: 717 QSQQGKVDAARTRIERIENELSQLLETLDTSR----------EQAREARAKLEDAVTLMG 766

		           QS +  +DA+R   +++E E  +L E    S           + +REA+ +LE       

		Sbjct: 312 QSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQ--- 368

		

		Query: 767 DLQGTRQALENERRQLTDARDQARDAARGVRDAMHALALTLESQRTQITSLSQTLERMDS 826

		            L+   +  E  R+ L    D +R+A + V  A+      L +       L ++ +  + 

		Sbjct: 369 KLEEQNKISEASRQSLRRDLDASREAKKQVEKALEEANSKLAALEKLNKELEESKKLTEK 428

		

		Query: 827 QRGQLDTRLE 836

		           ++ +L  +LE

		Sbjct: 429 EKAELQAKLE 438

		

		

		

		 Score = 39.3 bits (91), Expect = 8e-05

		 Identities = 41/284 (14%), Positives = 90/284 (31%), Gaps = 20/284 (7%)

		

		Query: 725  AARTRIERIENELSQLLETLDTSREQAREARAKLEDAVTLMGDLQGTRQALENERRQLTD 784

		              + +   +      L +  D   E+   A+ KL      + +     Q LE  +  L  

		Sbjct: 68   TLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEK 127

		

		Query: 785  ARDQARDAARGVRDAMHALALTLESQRTQITSLSQTLERMDSQRGQLDTRLEGLVAQLSD 844

		            A + A + +      +  L     +   +   L + LE   +       +++ L A+ + 

		Sbjct: 128  ALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAA 187

		

		Query: 845  GDSPVETLEHEHQAALSERVRTERVLSEARTMLESIDGELRSYEQTRQQRDEQALAQRER 904

		             ++    LE   + A++        +        ++       E+  +     + A   +

		Sbjct: 188  LEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAK 247

		

		Query: 905  ISQRKLDQQALVLSAEQLEAAVVKAGFALEDVVNGLPEAANVAEWEAAVVQIDGRMRRLE 964

		            I   + ++ AL     +LE A                    +    A   +I        

		Sbjct: 248  IKTLEAEKAALEARQAELEKA----------------LEGAMNFSTADSAKIKTLEAEKA 291

		

		Query: 965  PVNLAAIQEYGEAAQRSEYLDAQNLDLNTALETLEEAIRKIDRE 1008

		                A   E  +   +S+ L+A    L   L+   EA ++++ E

		Sbjct: 292  ----ALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAE 331

		

		

		>PF05272#Virulence-associated E family protein

		          Length = 892

		

		 Score = 30.0 bits (67), Expect = 0.017

		 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 10/77 (12%)

		

		Query: 132 MLVVSDDMLAHAYHVRYELIEFSVFLLAARGMGLVPLHGACVGRQGRCVLLL-GASGAGK 190

		           +L  + D       +RY  +     L+      + P      G +    ++L G  G GK

		Sbjct: 557 VLGKTPDDYKPR-RLRYLQLVGKYILMGHVARVMEP------GCKFDYSVVLEGTGGIGK 609

		

		Query: 191 STLALHSLLHGLDFIAE 207

		           STL   + L GLDF ++

		Sbjct: 610 STLI--NTLVGLDFFSD 624

		

		

		>OMPADOMAIN#OMPA domain signature.

		          Length = 346

		

		 Score = 71.1 bits (174), Expect = 4e-16

		 Identities = 32/118 (27%), Positives = 48/118 (40%), Gaps = 16/118 (13%)

		

		Query: 162 INSDILFGTGSASLAGSARGTLSALAAVLRD---APNGVRVEGYTDNQPIATAQFPSNWE 218

		           + SD+LF    A+L    +  L  L + L +       V V GYTD   I +  +  N  

		Sbjct: 217 LKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDR--IGSDAY--NQG 272

		

		Query: 219 LSAARAASVVHLFADDGVAPQRLAMVGYGEFRARADNSTEAGRNA---------NRRV 267

		           LS  RA SVV      G+   +++  G GE      N+ +  +           +RRV

		Sbjct: 273 LSERRAQSVVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRV 330

		

		

		>TYPE3IMRPROT#Type III secretion system inner membrane R protein

		           family signature.

		          Length = 261

		

		 Score =  126 bits (317), Expect = 3e-37

		 Identities = 80/239 (33%), Positives = 129/239 (53%), Gaps = 2/239 (0%)

		

		Query: 23  WTMLRTGALLTAMPLIGTRAVPGRVRVMLAGTLSMVLAPLLPPVPDWDGFTAQAVLSVAR 82

		           W +LR  AL++  P++  R+VP RV++ LA  ++  +AP LP             L   +

		Sbjct: 18  WPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALWL-AVQ 76

		

		Query: 83  ELAVGASMGFMLKLIFEAGAMAGELVSQSTGLSFAQMSDPLRGVTSGVIAQWFYLGFGLL 142

		           ++ +G ++GF ++  F A   AGE++    GLSFA   DP   +   V+A+   +   LL

		Sbjct: 77  QILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLL 136

		

		Query: 143 FFAANGHLAVIALLVDSYKALPIGTALPDAAAFAEVAPTLFLQILRGGLTLALPMMVAML 202

		           F   NGHL +I+LLVD++  LPIG    ++ AF  +       I   GL LALP++  +L

		Sbjct: 137 FLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALT-KAGSLIFLNGLMLALPLITLLL 195

		

		Query: 203 AVNLAFGALAKAAPALNPMQLGLPLTVLLGLFLLSSFASEFAPPVQRMFDTAFDAARDL 261

		            +NLA G L + AP L+   +G PLT+ +G+ L+++     AP  + +F   F+   D+

		Sbjct: 196 TLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLLADI 254

		

		

		>TYPE3IMQPROT#Type III secretion system inner membrane Q protein

		          family signature.

		          Length = 86

		

		 Score = 43.2 bits (102), Expect = 3e-09

		 Identities = 17/69 (24%), Positives = 32/69 (46%)

		

		Query: 13 GLVTVLWIAGPMLLAVLVVGVVIGVVQAATQLNEPTIAFVAKAVALTATLFATGSMLLGH 72

		           L  VL ++G   +   ++G+++G+ Q  TQL E T+ F  K + +   LF         

		Sbjct: 11 ALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFLLSGWYGEV 70

		

		Query: 73 LVEFTIALF 81

		          L+ +   + 

		Sbjct: 71 LLSYGRQVI 79

		

		

		>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP

		           signature.

		          Length = 245

		

		 Score =  242 bits (620), Expect = 1e-82

		 Identities = 125/237 (52%), Positives = 164/237 (69%), Gaps = 1/237 (0%)

		

		Query: 42  APAATPASAPAGANQLPSLPNVSVGRIGDQPVSLPLQTLLLMTAITLLPSMLLVLTAFTR 101

		           AP       P    QLP + +  +   G Q  SLP+QTL+ +T++T +P++LL++T+FTR

		Sbjct: 8   APVLLWLITPLAFAQLPGITSQPL-PGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTR 66

		

		Query: 102 ITIVLGLLRQALGTGQTPSNQVLLGLSMFLTALVMMPVWQKMWGAGLSPYLNNQIDFQTA 161

		           I IV GLLR ALGT   P NQVLLGL++FLT  +M PV  K++     P+   +I  Q A

		Sbjct: 67  IIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEA 126

		

		Query: 162 WTLTTQPLRAFMLAQIRETDLMTFAGMAGDGKYAGPDAVPFPVLVASFVTSELKTAFEIG 221

		                QPLR FML Q RE DL  FA +A  G   GP+AVP  +L+ ++VTSELKTAF+IG

		Sbjct: 127 LEKGAQPLREFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVTSELKTAFQIG 186

		

		Query: 222 FLIFIPFVIIDLVVASVLMSMGMMMLSPMLISAPFKILLFILVDGWVLVVGTLAASF 278

		           F IFIPF+IIDLV+ASVLM++GMMM+ P  I+ PFK++LF+LVDGW L+VG+LA SF

		Sbjct: 187 FTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243

		

		

		>FLGMOTORFLIN#Flagellar motor switch protein FliN signature.

		          Length = 137

		

		 Score =  114 bits (288), Expect = 2e-36

		 Identities = 54/103 (52%), Positives = 78/103 (75%), Gaps = 1/103 (0%)

		

		Query: 9   AAPATFDSLQAEHDQNATDLNLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERG 68

		           AA A F  L    D +    ++D+I+D+PV L++E+GR R+ I+ LL+L QGSVV L+  

		Sbjct: 34  AADAVFQQL-GGGDVSGAMQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGL 92

		

		Query: 69  AGEPLDVYVNGTLIAHGEVVVINDRFGIRLTDVVSPSERIRRL 111

		           AGEPLD+ +NG LIA GEVVV+ D++G+R+TD+++PSER+RRL

		Sbjct: 93  AGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRL 135

		

		

		>FLGMOTORFLIM#Flagellar motor switch protein FliM signature.

		          Length = 344

		

		 Score =  256 bits (655), Expect = 8e-86

		 Identities = 89/327 (27%), Positives = 163/327 (49%), Gaps = 14/327 (4%)

		

		Query: 3   VSDLLSQDEIDALLHGVDSGAVNTEPEPLPGEARQ-----YDLSSQDRIIRGRMPTLEMV 57

		           ++++LSQDEID LL  + SG  +   E     +       YD    D+  + +M TL ++

		Sbjct: 1   MTEVLSQDEIDQLLTAISSG--DASIEDARPISDTRKITLYDFRRPDKFSKEQMRTLSLM 58

		

		Query: 58  NERFARLWRIGLFNLIRRSADLSVRGIDLVKFNEYMHSLYVPTNLNLIRFKPLRGTGLIV 117

		           +E FARL    L   +R    + V  +D + + E++ S+  P+ L +I   PL+G  ++ 

		Sbjct: 59  HETFARLTTTSLSAQLRSMVHVHVASVDQLTYEEFIRSIPTPSTLAVITMDPLKGNAVLE 118

		

		Query: 118 FEPTLVFTVVDNFFGGDGRYHTRIEGREFTATEMRVVQLMLKQTFADLKEAWAPVMEVDF 177

		            +P++ F+++D  FGG G+       R+ T  E  V++ ++ +  A+++E+W  V+++  

		Sbjct: 119 VDPSITFSIIDRLFGGTGQAAKVQ--RDLTDIENSVMEGVIVRILANVRESWTQVIDLRP 176

		

		Query: 178 EYINSEINPHFANIVTPREYVVVCRFHVELEGGGGEIHITLPYSMLEPIRELLDAG--IQ 235

		                E NP FA IV P E VV+     ++    G ++  +PY  +EPI   L +     

		Sbjct: 177 RLGQIETNPQFAQIVPPSEMVVLVTLETKVGEEEGMMNFCIPYITIEPIISKLSSQFWFS 236

		

		Query: 236 SDRNDRDDSWNVMLREQLDTAEVTLSSVLASKRMSLRQLTGLKIGDIL---PIDLPAQVP 292

		           S R      +  +LR++L T ++ + + + S R+S+R + GL++GDI+      +     

		Sbjct: 237 SVRRSSTTQYMGVLRDKLSTVDMDVVAEVGSLRLSVRDILGLRVGDIIRLHDTHVGDPFV 296

		

		Query: 293 LCVEDIPLFTGEFGVSNGNNAVKITAV 319

		           L + +   F  + GV     A +I   

		Sbjct: 297 LSIGNRKKFLCQPGVVGKKIAAQILER 323

		

		

		>FLGHOOKFLIK#Flagellar hook-length control protein signature.

		          Length = 375

		

		 Score = 47.5 bits (112), Expect = 6e-08

		 Identities = 54/242 (22%), Positives = 95/242 (39%), Gaps = 23/242 (9%)

		

		Query: 198 DAAAPTAPATAGTALPSLGALAPAATAGAKPTSVTALSGDAQAAALMSMATKALDPGTDD 257

		           D  A         +L +L A+ P      K T   +     +   L +  T         

		Sbjct: 117 DEKADDLNEDVTASLSALFAMLPGFDNTPKVTDAPSTVLPTEKPTLFTKLTSEQLTTAQP 176

		

		Query: 258 SAGPAAPDAPAFVLPTTTAAALGRLQDPAPVF-SASPTPTPE----------------MG 300

		              P  P  P   L     +    +  P+PV  +ASP  TP                 +G

		Sbjct: 177 DDAPGTPAQPLTPLVAEAQSKAEVISTPSPVTAAASPLITPHQTQPLPTVAAPVLSAPLG 236

		

		Query: 301 SDTFDDAIGARMSWLADQKIGHAHIKVTPNEMGPVEVRLHLEGDKVNASFSSANADVRQA 360

		           S  +  ++   +S    Q    A +++ P ++G V++ L ++ ++      S +  VR A

		Sbjct: 237 SHEWQQSLSQHISLFTRQGQQSAELRLHPQDLGEVQISLKVDDNQAQIQMVSPHQHVRAA 296

		

		Query: 361 LEQSLPRLREMLGQNGFQLGQADV------GQQQQSQSGNRNGGGNDGTGLSLDDSPPVG 414

		           LE +LP LR  L ++G QLGQ+++      GQQQ +    ++    +   L+ +D   + 

		Sbjct: 297 LEAALPVLRTQLAESGIQLGQSNISGESFSGQQQAASQQQQSQRTANHEPLAGEDDDTLP 356

		

		Query: 415 IP 416

		           +P

		Sbjct: 357 VP 358

		

		

		>FLGFLIJ#Flagellar FliJ protein signature.

		          Length = 147

		

		 Score = 27.1 bits (59), Expect = 0.021

		 Identities = 33/140 (23%), Positives = 56/140 (40%), Gaps = 4/140 (2%)

		

		Query: 1   MMQSKRIDPLLRRAQEQEDKVARDLAERQRALDTHQSRLDELRRYAEEYANSHMAGTSAA 60

		           M +   +  L   A+++ +  AR L E +R     + +L  L  Y  EY N+  +  SA 

		Sbjct: 1   MAEHGALATLKDLAEKEVEDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRNNLNSDMSAG 60

		

		Query: 61  ALTNR----RAFLDRLDSAVLQQAQTVETNRNKVEAERTRLLLASREKQVLEQLAASYRA 116

		             +NR    + F+  L+ A+ Q  Q +     KV+          +  Q  + L      

		Sbjct: 61  ITSNRWINYQQFIQTLEKAITQHRQQLNQWTQKVDIALNSWREKKQRLQAWQTLQERQST 120

		

		Query: 117 QENKVIERRDQREMDDLGAR 136

		                  R DQ++MD+   R

		Sbjct: 121 AALLAENRLDQKKMDEFAQR 140

		

		

		>FLGFLIH#Flagellar assembly protein FliH signature.

		          Length = 228

		

		 Score = 45.2 bits (106), Expect = 4e-08

		 Identities = 37/159 (23%), Positives = 78/159 (49%), Gaps = 7/159 (4%)

		

		Query: 51  QEGYARGHAEGFAQGQSEVRRLTAQIDGILDNFTRPLARLENEVVGALGELAVRIAGSLV 110

		           QEG A+G  +G A+ +S+   + A++  ++  F   L  L++ +   L ++A+  A  ++

		Sbjct: 73  QEGLAQGLEQGLAEAKSQQAPIHARMQQLVSEFQTTLDALDSVIASRLMQMALEAARQVI 132

		

		Query: 111 GRAYQADPQLLAELVQEAIDAVGGAGREVEVRLHPDDITALLPHLAPSSTT---RVAPDL 167

		           G+    D   L + +Q+ +        + ++R+HPDD+  +   L  + +    R+  D 

		Sbjct: 133 GQTPTVDNSALIKQIQQLLQQEPLFSGKPQLRVHPDDLQRVDDMLGATLSLHGWRLRGDP 192

		

		Query: 168 SLSRGDLRVHAESVRVDGTLDARLRAALETVMRKSGAGL 206

		           +L  G  +V A+    +G LDA +    + + R +  G+

		Sbjct: 193 TLHPGGCKVSAD----EGDLDASVATRWQELCRLAAPGV 227

		

		

		>FLGMOTORFLIG#Flagellar motor switch protein FliG signature.

		          Length = 344

		

		 Score =  306 bits (786), Expect = e-105

		 Identities = 104/329 (31%), Positives = 199/329 (60%)

		

		Query: 1   MTGVQRAAVLLLSLGESDAAEVLKHMDPKEVQKIGIAMATMTGISRDQVEKVMDDFNGEL 60

		           +TG Q+AA+LL+S+G   +++V K++  +E++ +   +A +  I+ +  + V+ +F   +

		Sbjct: 15  LTGKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKDNVLLEFKELM 74

		

		Query: 61  AGKTSLGVGADDYIRNVLIQALGADKAGGLIDRILLGRNTTGLDTLKWMDPRAVADLVRN 120

		             +  +  G  DY R +L ++LG  KA  +I+ +     +   + ++  DP  + + ++ 

		Sbjct: 75  MAQEFIQKGGIDYARELLEKSLGTQKAVDIINNLGSALQSRPFEFVRRADPANILNFIQQ 134

		

		Query: 121 EHPQIIAIVMAHLDSDQAAEALKLLPERTRADVLLRIATLDGIPPNALSELNDIMERQFS 180

		           EHPQ IA+++++LD  +A+  L  LP   + +V  RIA +D   P  + E+  ++E++ +

		Sbjct: 135 EHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVREVERVLEKKLA 194

		

		Query: 181 GNQNLKSSNVGGIKVAANILNFLDTGADQGVLGEIGKIDADLAGKIQDLMFVFDNLVDLD 240

		              +   ++ GG+     I+N  D   ++ ++  + + D +LA +I+  MFVF+++V LD

		Sbjct: 195 SLSSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEIKKKMFVFEDIVLLD 254

		

		Query: 241 DRGLQTLLREVSGERLGLALRGADVKVREKITRNMSQRAAEILLEDMEARGPVRLADVEA 300

		           DR +Q +LRE+ G+ L  AL+  D+ V+EKI +NMS+RAA +L EDME  GP R  DVE 

		Sbjct: 255 DRSIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDMEFLGPTRRKDVEE 314

		

		Query: 301 AQKEILTIVRRLADEGAISLGGAGAEAMV 329

		           +Q++I++++R+L ++G I +   G E ++

		Sbjct: 315 SQQKIVSLIRKLEEQGEIVISRGGEEDVL 343

		

		

		>FLGMRINGFLIF#Flagellar M-ring protein signature.

		          Length = 559

		

		 Score =  355 bits (913), Expect = e-118

		 Identities = 190/577 (32%), Positives = 304/577 (52%), Gaps = 47/577 (8%)

		

		Query: 16  KAGQWFDRVRSLQITRKLTMMAMIAVAVAAGLAVFFWSQKPGYQSLYTGLDDKGNAEAAD 75

		           K  +W +R+R+     ++ ++   + AVA  +A+  W++ P Y++L++ L D+       

		Sbjct: 11  KPLEWLNRLRANP---RIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVA 67

		

		Query: 76  LLRTAQIPFKIDQDTGAISVPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQF 135

		            L    IP++    +GAI VP D++++ RL+LA  GL  K    GFEL++++  FG+SQF

		Sbjct: 68  QLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQGLP-KGGAVGFELLDQEK-FGISQF 125

		

		Query: 136 VENARYQHALETELSRTIGTLRPVREARVHLAIPKPSAFTRQRDVASASVVLELRGGQGL 195

		            E   YQ ALE EL+RTI TL PV+ ARVHLA+PKPS F R++   SASV + L  G+ L

		Sbjct: 126 SEQVNYQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRAL 185

		

		Query: 196 ERNQVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQHAAQFEQVRRQESSY 255

		           +  Q+ A+V+LV+S++  + P  VT+VDQSG +L+ ++ +       AQ +     ES  

		Sbjct: 186 DEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLN-DAQLKFANDVESRI 244

		

		Query: 256 NQRIRELLEPMTGPGRVNPEVSVDMDFSVVEEARELYN----GEPAKLRSEQVSD-TSTS 310

		            +RI  +L P+ G G V+ +V+  +DF+  E+  E Y+       A LRS Q++      

		Sbjct: 245 QRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVG 304

		

		Query: 311 ATGPQGPPGATSNSPGQPPAPAANATAGAPGT--------PAAANGQAAAPAAPTESSKS 362

		           A  P G PGA SN     PAP   A    P T        P  +    +  A P  + ++

		Sbjct: 305 AGYPGGVPGALSNQ----PAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRSTQRN 360

		

		Query: 363 ATRNYELDRTLQHTRQPAGRIKRVSVAVLLDNVPRPGAKGKMVEQPLTAAELTRIEGLVK 422

		            T NYE+DRT++HT+   G I+R+SVAV+++       K      PLTA ++ +IE L +

		Sbjct: 361 ETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKP----LPLTADQMKQIEDLTR 416

		

		Query: 423 QAVGFDAARGDTVSVMNAPFVREAVAGEEGPKWWEDPRVQNGLRLLVGAVVVLALLF--- 479

		           +A+GF   RGDT++V+N+PF      G E P W +   +   L      ++VL + +   

		Sbjct: 417 EAMGFSDKRGDTLNVVNSPFSAVDNTGGELPFWQQQSFIDQLLAAG-RWLLVLVVAWILW 475

		

		Query: 480 -GVVRPTLRQLTGVTAIKEKQAKGGNDGTPQSADVRMVDDDDLMPRLEEDTAQLGQDRKN 538

		              VRP L +        ++QA+   +   ++ +VR+  D+ L            Q R+ 

		Sbjct: 476 RKAVRPQLTRRVEEAKAAQEQAQVRQETE-EAVEVRLSKDEQL------------QQRRA 522

		

		Query: 539 PIALPDAYEERMRLAREAVKADSKRVAQVVKGWVASE 575

		              L    E   +  RE    D + VA V++ W++++

		Sbjct: 523 NQRLG--AEVMSQRIREMSDNDPRVVALVIRQWMSND 557

		

		

		>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE

		           signature.

		          Length = 103

		

		 Score = 62.8 bits (152), Expect = 3e-16

		 Identities = 28/92 (30%), Positives = 50/92 (54%)

		

		Query: 35  QIQGLAGTQGTPATQATQAPSFSETLRGAIGGVNEAQQKSGALAKAFEMGDPSADLARVM 94

		           Q+Q  A +     +      SF+  L  A+  +++ Q  +   A+ F +G+P   L  VM

		Sbjct: 12  QLQATAMSARAQESLPQPTISFAGQLHAALDRISDTQTAARTQAEKFTLGEPGVALNDVM 71

		

		Query: 95  VASQQSQVAFRATVEVRNRLVQAYQDVMNMPL 126

		              Q++ V+ +  ++VRN+LV AYQ+VM+M +

		Sbjct: 72  TDMQKASVSMQMGIQVRNKLVAAYQEVMSMQV 103

		

		

		>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase

		           signature.

		          Length = 261

		

		 Score =  111 bits (279), Expect = 9e-32

		 Identities = 73/252 (28%), Positives = 121/252 (48%), Gaps = 18/252 (7%)

		

		Query: 16  GLHGKTVLVTGASKGIGEAVARACAAAGARLIVTGRDAERLQATLASLHGDGH--RLFAG 73

		           G+ GK   +TGA++GIGEAVAR  A+ GA +     + E+L+  ++SL  +      F  

		Sbjct: 5   GIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPA 64

		

		Query: 74  DLSDAA----VVQQLAADCGPVDGVVHSAGIRGLSPMKLVSEKFLREVMNINYLAPVMLT 129

		           D+ D+A    +  ++  + GP+D +V+ AG+     +  +S++      ++N       +

		Sbjct: 65  DVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNAS 124

		

		Query: 130 RHLLARQSLKPGGSVIFLSSIAALTGTVGVGPYAGSKAALVGTLRPLALELARRKIRANA 189

		           R +      +  GS++ + S  A      +  YA SKAA V   + L LELA   IR N 

		Sbjct: 125 RSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNI 184

		

		Query: 190 LCPGLVET----SLINED-------KAWFEESRKRYPLG-IGQPDDVALACLYFLSDASS 237

		           + PG  ET    SL  ++       K   E  +   PL  + +P D+A A L+ +S  + 

		Sbjct: 185 VSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAG 244

		

		Query: 238 KVTGQAFSMDGG 249

		            +T     +DGG

		Sbjct: 245 HITMHNLCVDGG 256

		

		

		>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase

		           signature.

		          Length = 261

		

		 Score = 98.2 bits (244), Expect = 1e-26

		 Identities = 69/261 (26%), Positives = 115/261 (44%), Gaps = 18/261 (6%)

		

		Query: 10  DAFGLQNKTVLVTGASSGIGAAVATLCARLGARVVLTGRDIARLDAVAVALQGNGH---- 65

		           +A G++ K   +TGA+ GIG AVA   A  GA +     +  +L+ V  +L+        

		Sbjct: 2   NAKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEA 61

		

		Query: 66  --AVVAGDLTEEDTRTRLINAAERYHGLVSCAGIAALVPFRMAAEKHLQQMLSVNYLAPI 123

		             A V      ++   R+         LV+ AG+         +++  +   SVN     

		Sbjct: 62  FPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVF 121

		

		Query: 124 ALTQQLLVKRRLSEGASLVYISALSARAAPQAAAGYAASKAALEAAVRTLALEQAKHGIR 183

		             ++ +          S+V + +  A     + A YA+SKAA     + L LE A++ IR

		Sbjct: 122 NASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIR 181

		

		Query: 184 ANCIAPGYVDTPMLKKLGAAADLDD----------KIGLTPLGRI-DPDDIAKGAVYLLS 232

		            N ++PG  +T M   L A  +  +          K G+ PL ++  P DIA   ++L+S

		Sbjct: 182 CNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGI-PLKKLAKPSDIADAVLFLVS 240

		

		Query: 233 GASRWITRSALTIDGGISLPI 253

		           G +  IT   L +DGG +L +

		Sbjct: 241 GQAGHITMHNLCVDGGATLGV 261

		

		

		>PF04183#IucA / IucC family

		          Length = 580

		

		 Score = 29.1 bits (65), Expect = 0.029

		 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 4/45 (8%)

		

		Query: 71  ERLQWKREEIDALIVVTQSPDYPIPATAII--LQDRLGLSHATVA 113

		           ER  W    IDA  +     D P+ A  ++  L+  L +S ATVA

		Sbjct: 51  ERGIWGWLWIDAQTLRCA--DEPVLAQTLLMQLKQVLSMSDATVA 93

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score =  437 bits (1126), Expect = e-152

		 Identities = 177/489 (36%), Positives = 257/489 (52%), Gaps = 16/489 (3%)

		

		Query: 1   MSESRILLIDSDAVRAERTVSLLEFMDFNPRWVTDGADINPGRHRHDEWMAVMVGSAQDA 60

		           M+ + IL+ D DA         L    ++ R  ++ A +   R        ++V      

		Sbjct: 1   MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLW--RWIAAGDGDLVVTDVVMP 58

		

		Query: 61  -AQADKFFDWLADAKLPPPVLLMEGSPSAFAQAHGLHEANVWTLDTPLRHTQLEALLRRA 119

		              A      +  A+   PVL+M    +         +     L  P   T+L  ++ RA

		Sbjct: 59  DENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRA 118

		

		Query: 120 S--LKRLDAEHQAGVQQDTGPTGNSEAVTRLRRLIDQVAAFDTTVLVLGESGTGKEVVAR 177

		               KR  ++ +   Q      G S A+  + R++ ++   D T+++ GESGTGKE+VAR

		Sbjct: 119 LAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVAR 178

		

		Query: 178 AIHQHSPRRDGPFVAINCGAIPPDLLESELFGHEKGAFTGALSTRKGRFEMAEGGTLLLD 237

		           A+H +  RR+GPFVAIN  AIP DL+ESELFGHEKGAFTGA +   GRFE AEGGTL LD

		Sbjct: 179 ALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLD 238

		

		Query: 238 EIGDMSLPMQVKLLRVLQERSFERVGGGQTIRCNVRVIAATHRNLETRISDGQFREDLFY 297

		           EIGDM +  Q +LLRVLQ+  +  VGG   IR +VR++AAT+++L+  I+ G FREDL+Y

		Sbjct: 239 EIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYY 298

		

		Query: 298 RLNVFPIEMPALRERVDDLAMLVQTIAGQLARTGRGEVRFADEALQALRSYDWPGNVREL 357

		           RLNV P+ +P LR+R +D+  LV+    Q  + G    RF  EAL+ ++++ WPGNVREL

		Sbjct: 299 RLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKEGLDVKRFDQEALELMKAHPWPGNVREL 358

		

		Query: 358 TNLVERLAVLHPGGLVRVQDLPARYRGDFAAAVPAEPAPEPALVAAPVEDIALPGNVVTL 417

		            NLV RL  L+P  ++  + +    R +      +      A   +     A+  N+   

		Sbjct: 359 ENLVRRLTALYPQDVITREIIENELRSEIPD---SPIEKAAARSGSLSISQAVEENMRQY 415

		

		Query: 418 PSTSADAEPATSSSLPDDGIDLRGHMANIELALINEALERTQGVVAHAAQLLGLRRTTLV 477

		            ++  DA                  +A +E  LI  AL  T+G    AA LLGL R TL 

		Sbjct: 416 FASFGDA--------LPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLR 467

		

		Query: 478 EKLRKYGID 486

		           +K+R+ G+ 

		Sbjct: 468 KKIRELGVS 476

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 55.2 bits (133), Expect = 3e-12

		 Identities = 20/118 (16%), Positives = 44/118 (37%), Gaps = 2/118 (1%)

		

		Query: 1   MSKLTVLLVDDHEGFINAAMRHFRKVEWLDIVGSAANGLEAIERSESLRPNVVLMDLAMP 60

		           M+  T+L+ DD         +   +  +   V   +N         +   ++V+ D+ MP

		Sbjct: 1   MTGATILVADDDAAIRTVLNQALSRAGY--DVRITSNAATLWRWIAAGDGDLVVTDVVMP 58

		

		Query: 61  EMGGLQATRLIKTQDDPPYIVIASHFDDAEHREHALRAGADNFVSKLSYIQEVMPILE 118

		           +         IK       +++ S  +       A   GA +++ K   + E++ I+ 

		Sbjct: 59  DENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116

		

		

		>SUBTILISIN#Subtilisin serine protease family (S8) signature.

		          Length = 326

		

		 Score = 64.1 bits (156), Expect = 5e-13

		 Identities = 58/293 (19%), Positives = 102/293 (34%), Gaps = 59/293 (20%)

		

		Query: 275 VAILDGGLPKHHP-IGPWLRSYRKLDEDADDDPDGPE----HGLGVTSAVLFGPIQPNGT 329

		           VA+LD G    HP +   +   R   +D + DP+  +    HG  V   +     +    

		Sbjct: 45  VAVLDTGCDADHPDLKARIIGGRNFTDDDEGDPEIFKDYNGHGTHVAGTIAATENENGVV 104

		

		Query: 330 AGRPFAPVDHLRVLDQEAGDEDPLELYRTLGLIEQVLLSRSYEF------INLSLGPDLE 383

		              P A +  ++VL+++             G  + ++    Y        I++SLG   +

		Sbjct: 105 GVAPEADLLIIKVLNKQGS-----------GQYDWIIQGIYYAIEQKVDIISMSLGGPED 153

		

		Query: 384 VEDREVHAWTSVIDELLSDGDTLMTVAVGNNGDRDRELGYNRVQVPSDCVNALAVGAADD 443

		           V           + + ++    L+  A GN GD D     + +  P      ++VGA + 

		Sbjct: 154 VP-----ELHEAVKKAVASQ-ILVMCAAGNEGDGDDR--TDELGYPGCYNEVISVGAINF 205

		

		Query: 444 TDAGWARAPYSAIGPGRSPGVIKPDLMAFGGNPAAKYFHVLAPNVKPVLTPQLGTSFAAP 503

		                  + +S             DL+A G +       +L+           GTS A P

		Sbjct: 206 DRH---ASEFSNSNNE-------VDLVAPGED-------ILSTVPGGKYATFSGTSMATP 248

		

		Query: 504 YLLRSAVGVRAIL--------GGDLTPLAIKALLVHAADPGEHDPVEVGWGKI 548

		           +      G  A++          DLT   + A L+    P  + P   G G +

		Sbjct: 249 H----VAGALALIKQLANASFERDLTEPELYAQLIKRTIPLGNSPKMEGNGLL 297

		

		

		>cloacin#Cloacin signature.

		          Length = 551

		

		 Score = 33.9 bits (77), Expect = 0.014

		 Identities = 39/146 (26%), Positives = 60/146 (41%), Gaps = 17/146 (11%)

		

		Query: 260 NSFTAVTGGSVNSGGGLALELLGPGGLLSFAQTGVVDGGAGGTNTLILQNSATGTGSGST 319

		           N+    T G++N G       LG GG       G  DG    +     +N+  G GSGS 

		Sbjct: 10  NTGAHSTSGNINGGPTG----LGVGG-------GASDGSGWSS-----ENNPWGGGSGS- 52

		

		Query: 320 GVGTLSTAQYINFGSLRVNSGTWSVGGGSNFGSSALNGGVLQFANPAQLGTAITANGGAL 379

		           G+     + + N G    + G    GG  +  ++ +  G    + P   G A++ + GAL

		Sbjct: 53  GIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGAL 112

		

		Query: 380 EAAAAGLSLSPAGGIALGAGGLTLQG 405

		            AA A +  +  G    G  G+ L G

		Sbjct: 113 SAAIADIMAALKGPFKFGLWGVALYG 138

		

		

		>SUBTILISIN#Subtilisin serine protease family (S8) signature.

		          Length = 326

		

		 Score =  118 bits (297), Expect = 4e-31

		 Identities = 72/318 (22%), Positives = 117/318 (36%), Gaps = 39/318 (12%)

		

		Query: 91  NADLAQQAGAKGQGVKLAVLDDNLYGSYAPISGKVDTSNDYTDTPGTPESASNALRGHGT 150

		            A        +G+GVK+AVLD      +  +  ++    ++TD             GHGT

		Sbjct: 30  QAPAVWNQT-RGRGVKVAVLDTGCDADHPDLKARIIGGRNFTDDDEGDPEIFKDYNGHGT 88

		

		Query: 151 VVSALVLGTAQDGFAGGVAPDADLFYARICAENSCGTQQTRRAAVDLAAA-GVRIANLSI 209

		            V+  +  T  +    GVAP+ADL   ++  +   G        +  A    V I ++S+

		Sbjct: 89  HVAGTIAATENENGVVGVAPEADLLIIKVLNKQGSGQYDWIIQGIYYAIEQKVDIISMSL 148

		

		Query: 210 GASYADAASSANAALAWKYALPPLVQADALIVAATGNEGAAEAS-----YPAATPVQEAS 264

		           G              A K A    V +  L++ A GNEG  +       YP         

		Sbjct: 149 GGPE----DVPELHEAVKKA----VASQILVMCAAGNEGDGDDRTDELGYPGCYN----- 195

		

		Query: 265 LRNNWLAVGAVNIDSAGNAAGLTSYSNHCGAAAQWCLVAPGSYFAPALAGTELQGQIAGT 324

		                ++VGA+N D        + +SN      +  LVAPG      + G +     +GT

		Sbjct: 196 ---EVISVGAINFDR-----HASEFSNSN---NEVDLVAPGEDILSTVPGGKYA-TFSGT 243

		

		Query: 325 SFSTAAVSGIAAQVLGVYPW-----MSASNLQQTLLTTATDLGDPGVDALYGFGLVNAAK 379

		           S +T  V+G  A +  +        ++   L   L+     LG      + G GL+    

		Sbjct: 244 SMATPHVAGALALIKQLANASFERDLTEPELYAQLIKRTIPLG--NSPKMEGNGLLYLTA 301

		

		Query: 380 AIKGPGQFASNWAANVTS 397

		             +    F +   A + S

		Sbjct: 302 VEELSRIFDTQRVAGILS 319

		

		

		>SURFACELAYER#Lactobacillus surface layer protein signature.

		          Length = 439

		

		 Score = 31.2 bits (70), Expect = 0.002

		 Identities = 19/40 (47%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

		

		Query: 106 APAPARAVVAPAPAAAAPVAAAAPAPAPSA-NASAGAPDD 144

		           A A A   VAP  A A PV AA    A SA NA+  A  D

		Sbjct: 10  AAAAALLAVAPIAATAMPVNAATTINADSAINANTNAKYD 49

		

		

		>PF03544#Gram-negative bacterial tonB protein

		          Length = 243

		

		 Score = 31.1 bits (70), Expect = 0.004

		 Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 3/99 (3%)

		

		Query: 24  QGKPPPRISLDEPVQAQPLPEPPMPVEVV---EVPTVLPMPAQLKPLPEVDEDKPAPEPA 80

		             +PPP   ++   + +P+PEPP    VV     P   P P  +K + +   D    E  

		Sbjct: 65  AVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESR 124

		

		Query: 81  DETVRVSKANAEARIAPTREGYVNAIQVWPYTDGALYQV 119

		             +   + A A    +         +        AL + 

		Sbjct: 125 PASPFENTAPARPTSSTATAATSKPVTSVASGPRALSRN 163

		

		

		>PF04335#VirB8 type IV secretion protein

		          Length = 227

		

		 Score = 56.8 bits (137), Expect = 6e-12

		 Identities = 39/215 (18%), Positives = 74/215 (34%), Gaps = 14/215 (6%)

		

		Query: 20  YQSAAQVWD-ERIGSARVQAKNWRLMAFGCLVLALLMAGGLVWRSAQSIVTPYVVEVDK- 77

		           Y   A  W+ +++ +A    K   ++A     LA      +   +    V PYV+ VD+ 

		Sbjct: 13  YFEEAASWERDKLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRN 72

		

		Query: 78  --AGQVRAVGEAATPYQPNDAQTAHHIARFITLVRSLSIDPIVVRQNWLDAYDYTTDRGA 135

		                + A          ++A   + +A ++              + +      +     

		Sbjct: 73  TGEASIAAKLHGDATITYDEAVRKYFLATYVRYRE--GWIAAAREEYFDAVMVMSARPEQ 130

		

		Query: 136 AVLNDHARTNDPFA---RIGRE-SVTVQITSVVRASDTSFNVRWTERRYVNGAAAGLEWW 191

		              +   +T++P +    +     V V+I  V         V +T +  V G+ +     

		Sbjct: 131 DRWSRFYKTDNPQSPQNILANRTDVFVEIKRVSFLGGNVAQVYFT-KESVTGSNSTKTDA 189

		

		Query: 192 TAVVSI-VQQTPRTEERLRRNPLGIYVNGLSWSRD 225

		            A +   V  TP  E    +NPLG  V   S+  D

		Sbjct: 190 VATIKYKVDGTPSKEVDRFKNPLGYQVE--SYRAD 222

		

		

		>PRTACTNFAMLY#Pertactin virulence factor family signature.

		          Length = 910

		

		 Score = 33.1 bits (75), Expect = 0.003

		 Identities = 36/142 (25%), Positives = 44/142 (30%), Gaps = 12/142 (8%)

		

		Query: 280 AVGAVGTGVAIGAAATGVGGAVMAGARMAPAAAKLVGSGARATASTAGSARSAFQAGSAA 339

		           A GA      +GA+   + G  + G R A  AA     GA      A   R    AG A 

		Sbjct: 213 ASGAPAAVSVLGASELTLDGGHITGGRAAGVAAM---QGAVVHLQRATIRRGDAPAGGAV 269

		

		Query: 340 AGGGAKGAMA----GLGNVAKTGAQAAGQKAAAGARSLKDRTAAAFRADGAGPAS--GGG 393

		            GG   G       G G          G   +  +  L     +   A   G A   G G

		Sbjct: 270 PGGAVPGGAVPGGFGPGGFGPVLDGWYGVDVSGSSVEL---AQSIVEAPELGAAIRVGRG 326

		

		Query: 394 AAATSGAAQGSAAEGDAPAAAG 415

		           A  T      SA  G+     G

		Sbjct: 327 ARVTVSGGSLSAPHGNVIETGG 348

		

		

		>TCRTETA#Tetracycline resistance protein signature.

		          Length = 399

		

		 Score = 51.0 bits (122), Expect = 4e-09

		 Identities = 78/376 (20%), Positives = 128/376 (34%), Gaps = 31/376 (8%)

		

		Query: 9   FIALGLFCLYAVEFGVV-GILPAIVQRHGISVAQA---GWLVALFAGVVAVCGPAMVLWL 64

		            + L    L AV  G++  +LP +++    S       G L+AL+A +   C P +    

		Sbjct: 8   IVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALS 67

		

		Query: 65  SRFDRRKVLAGSLLVFSLCNLLSAWAPSFGVLMALRVPSALLHPVFFSVAFAAAVSLYPP 124

		            RF RR VL  SL   ++   + A AP   VL   R+ + +      +VA A    +   

		Sbjct: 68  DRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGAT-GAVAGAYIADITDG 126

		

		Query: 125 ERAAHATSMAFLGTTLGLVLGVPLATLIEARVSYEAAFYFCAAVSLAAAAGLWIML---- 180

		           +  A            G+V G P+   +    S  A F+  AA++         +L    

		Sbjct: 127 DERARHFGFMSACFGFGMVAG-PVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESH 185

		

		Query: 181 -----PSRPEAQAAMLGRPLAVLRRPTVWLSIV-----MVVCVFAAMFSVYSYAAEYLAR 230

		                P R EA   +     A        L  V     +V  V AA++ ++         

		Sbjct: 186 KGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFG------ED 239

		

		Query: 231 QARLGGEAISVLLAVFGVGGVLGN-LLAGRALGRRLAWTVLGYPAALAVAYGVLLMFASP 289

		           +       I + LA FG+   L   ++ G    R      L           +LL FA+ 

		Sbjct: 240 RFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATR 299

		

		Query: 290 SFAAMLPICLLWGAAHTSGLIVSQMWMTSAAPDAPEFATSLYVSAANLGVVLGAAAGGGF 349

		            + A   + LL         +   M       +          +  +L  ++G       

		Sbjct: 300 GWMAFPIMVLLASGGIGMPAL-QAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAI 358

		

		Query: 350 IDAVGMRGTVWSGWLF 365

		             A     T W+GW +

		Sbjct: 359 YAA---SITTWNGWAW 371

		

		

		>TCRTETB#Tetracycline resistance protein TetB signature.

		          Length = 458

		

		 Score = 49.5 bits (118), Expect = 1e-08

		 Identities = 37/217 (17%), Positives = 82/217 (37%), Gaps = 3/217 (1%)

		

		Query: 14  LLALAMAAFITILTEALPAGLLPQMAQGLAVSEAWVGQTVTIYAIGSLVAAIPLTAATQG 73

		           L+ L + +F ++L E +    LP +A       A      T + +   +        +  

		Sbjct: 16  LIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQ 75

		

		Query: 74  VRRRPLLLAAIAGFVVANTVTTFSGSYV-LTMVARFLAGVSAGLLWALLAGYAARMVPEH 132

		           +  + LLL  I      + +     S+  L ++ARF+ G  A    AL+    AR +P+ 

		Sbjct: 76  LGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKE 135

		

		Query: 133 QKGRAIAIAMVGTPLALSLGVPAGTFLGNLVGWRTCFGIMSALALVLMVWVRVQVPDFAG 192

		            +G+A  +      +   +G   G  + + + W     I   +  ++ V   +++     

		Sbjct: 136 NRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIP--MITIITVPFLMKLLKKEV 193

		

		Query: 193 QAVGKRLSLGRVFTIAGVRPVLFVVLAFVLAHNILYT 229

		           +  G     G +    G+   +    ++ ++  I+  

		Sbjct: 194 RIKGHFDIKGIILMSVGIVFFMLFTTSYSISFLIVSV 230

		

		

		>TCRTETB#Tetracycline resistance protein TetB signature.

		          Length = 458

		

		 Score = 35.6 bits (82), Expect = 1e-04

		 Identities = 31/127 (24%), Positives = 52/127 (40%), Gaps = 2/127 (1%)

		

		Query: 91  TVFMGAMTIGRLALNRFVDQFGIRRTLQWSGILTLIGMVMTVLYPSLLS-SIVGFCLVGF 149

		           T FM   +IG     +  DQ GI+R L +  I+   G V+  +  S  S  I+   + G 

		Sbjct: 56  TAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGA 115

		

		Query: 150 GIGAVIPLVASAAAKSSTMAPSS-AIASVLTIGFLGLLIGPPLIGFLSDAFGLRYAFLLC 208

		           G  A   LV    A+         A   + +I  +G  +GP + G ++      Y  L+ 

		Sbjct: 116 GAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIP 175

		

		Query: 209 VVMAFGI 215

		           ++    +

		Sbjct: 176 MITIITV 182

		

		

		>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase

		           signature.

		          Length = 261

		

		 Score = 47.0 bits (111), Expect = 3e-08

		 Identities = 44/206 (21%), Positives = 73/206 (35%), Gaps = 24/206 (11%)

		

		Query: 32  VVVTAGHSGLGLETTRALADAGARVIVAARDVE----VARAKTSEISGAEVELLDLSSLT 87

		             +T    G+G    R LA  GA +     + E    V  +  +E   AE    D+    

		Sbjct: 11  AFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDSA 70

		

		Query: 88  SVHDFASRFLATGRHIDILIGNAGI--MACPETRVGQGWEAQFATNHLGHYVLVNLLWPS 145

		           ++ +  +R       IDIL+  AG+       +   + WEA F+ N  G +     +   

		Sbjct: 71  AIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSKY 130

		

		Query: 146 LK---GGARVVAVSSAGHH-QSGIRWDDVQFKHGYDKWLAYGQSKTANALFAVHLDRLGQ 201

		           +     G+ V   S+     ++ +               AY  SK A  +F   L     

		Sbjct: 131 MMDRRSGSIVTVGSNPAGVPRTSMA--------------AYASSKAAAVMFTKCLGLELA 176

		

		Query: 202 NEGVRAFSLHPGKIFTPLQRHLSQEE 227

		              +R   + PG   T +Q  L  +E

		Sbjct: 177 EYNIRCNIVSPGSTETDMQWSLWADE 202

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 32.9 bits (75), Expect = 0.003

		 Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 8/77 (10%)

		

		Query: 219 VGAAVGVGGDTEQRIELLAAAGVDVVIVDTAHGHSQGVIDRVAWVKKAYPQLQVIGGNIV 278

		            G  V +  +       +AA   D+V+ D          D +  +KKA P L V+   ++

		Sbjct: 26  AGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA-FDLLPRIKKARPDLPVL---VM 81

		

		Query: 279 TG----DAALALMDAGA 291

		           +       A+   + GA

		Sbjct: 82  SAQNTFMTAIKASEKGA 98

		

		

		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

		          Length = 334

		

		 Score = 81.4 bits (201), Expect = 8e-19

		 Identities = 59/337 (17%), Positives = 111/337 (32%), Gaps = 61/337 (18%)

		

		Query: 286 TVMVTGAGGSIGSEVCRQCARHGARRIVLLEIDELA-----LLTVDSDLRRLFPDIEVVR 340

		             +VTGA G IG  V ++    G + +    ID L       L          P  +  +

		Sbjct: 2   KYLVTGAAGFIGFHVSKRLLEAGHQVVG---IDNLNDYYDVSLKQARLELLAQPGFQFHK 58

		

		Query: 341 VLGDCGDPAVVAHALNTALPDAVFHAAAYKQVPLLEEQLREAVRNNVLATENVARACQRA 400

		              D  D   +     +   + VF +     V    E       +N+    N+   C+  

		Sbjct: 59  --IDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHN 116

		

		Query: 401 RIETFVFIST---------------DKAVEPVNVLGASKRYAEMICQSLDA-RDAPTRFI 444

		           +I+  ++ S+               D    PV++  A+K+  E++  +       P    

		Sbjct: 117 KIQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPA--T 174

		

		Query: 445 TVRFGNVLDSAGS---VVPLFREQIRQGGPVTV-THPDVTRYFMTIPEACQLVVQA---- 496

		            +RF  V    G     +  F + + +G  + V  +  + R F  I +  + +++     

		Sbjct: 175 GLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVI 234

		

		Query: 497 --------------AASASHGAIYTLDMGEPVPIRLLAEQMIRLAGKQPGKDVAILYTGL 542

		                         AAS +   +Y +    PV +       I+      G +       L

		Sbjct: 235 PHADTQWTVETGTPAASIAPYRVYNIGNSSPVEL----MDYIQALEDALGIEAKKNMLPL 290

		

		Query: 543 RPGEKLHE----TLFYSDEDYRPTAHPKILEAGVREF 575

		           +PG+ L         Y    + P      ++ GV+ F

		Sbjct: 291 QPGDVLETSADTKALYEVIGFTPETT---VKDGVKNF 324

		

		

		>DNABINDINGHU#Prokaryotic integration host factor signature.

		          Length = 91

		

		 Score =  117 bits (295), Expect = 3e-38

		 Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 1/89 (1%)

		

		Query: 2  TKSELIEILARRQAHLKADDVDLAVKSLLEMMGQALSDGDRIEIRGFGSFSLHYRPPRLG 61

		           K +LI  +A     L   D   AV ++   +   L+ G+++++ GFG+F +  R  R G

		Sbjct: 3  NKQDLIAKVAE-ATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKG 61

		

		Query: 62 RNPKTGESVALPGKHVPHFKPGKELRERV 90

		          RNP+TGE + +    VP FK GK L++ V

		Sbjct: 62 RNPQTGEEIKIKASKVPAFKAGKALKDAV 90

		

		

		>PF05272#Virulence-associated E family protein

		          Length = 892

		

		 Score = 31.6 bits (71), Expect = 0.002

		 Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

		

		Query: 39  ALLVQGDNGAGKTTLLRVLAGLLHVERGQIEI-DGKTARRGDRSRFMAYLGHLPGL-KAD 96

		           +++++G  G GK+TL+  L GL        +I  GK +           L  +    +AD

		Sbjct: 598 SVVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTGKDSYEQIAGIVAYELSEMTAFRRAD 657

		

		Query: 97  LSTLEN 102

		              ++ 

		Sbjct: 658 AEAVKA 663

		

		

		>PF04335#VirB8 type IV secretion protein

		          Length = 227

		

		 Score = 26.7 bits (59), Expect = 0.041

		 Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 3/39 (7%)

		

		Query: 4  QRRRRIWLV--IALVLAGGLATALVAMA-LQRNVAYLYT 39

		          + ++  W+V  +A  LA     A+ A+  L+    Y+ T

		Sbjct: 30 RSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVIT 68

		

		

		>MALTOSEBP#Maltose binding protein signature.

		          Length = 396

		

		 Score = 30.1 bits (67), Expect = 0.024

		 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 12/71 (16%)

		

		Query: 387 YGITFWPTFKGRDGCRTPMPWTDAPSAGFSSGKPWLPLAEEHRAAAV-------SVQQDD 439

		           YG+T  PTFKG+       P+    SAG ++  P   LA+E     +       +V +D 

		Sbjct: 268 YGVTVLPTFKGQPS----KPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDK 323

		

		Query: 440 PLSVLSAVRQF 450

		           PL  + A++ +

		Sbjct: 324 PLGAV-ALKSY 333

		

		

		>MYCMG045#Hypothetical mycoplasma lipoprotein (MG045) signature.

		          Length = 483

		

		 Score = 29.3 bits (65), Expect = 0.022

		 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 3/37 (8%)

		

		Query: 187 TTFMKALVNHIP--SEERLVTIEDARELFISQPNSVH 221

		           T  +KA+V H    ++ RLV I+DAR +F S  N V+

		Sbjct: 171 TDVIKAIVKHKDRFNDNRLVFIDDARTIF-SLANIVN 206

		

		

		>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein

		           signature.

		          Length = 522

		

		 Score = 35.5 bits (81), Expect = 2e-04

		 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 10/89 (11%)

		

		Query: 44  TGLGITTQVELSPNEKILDYSTGFTGGWELTRRENVFYLKPKNVDVD-------TNMMIR 96

		           T L   T ++L  +E I   +TGF  GW +    N  +++PK+V  +        N  + 

		Sbjct: 59  TSLDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALM 118

		

		Query: 97  TATHSYILELK---VVATDWQRLEQAKQA 122

		           T  +   L+ K   V A D + LE+ K+A

		Sbjct: 119 TRDYQEFLKTKKLIVDAPDPKELEEQKKA 147

		

		

		

		 Score = 29.8 bits (66), Expect = 0.011

		 Identities = 11/27 (40%), Positives = 17/27 (62%)

		

		Query: 165 YDYDYATRAKKSWLIPSRVYDDGKFTY 191

		           Y+Y  A   +   ++PS ++DDG FTY

		Sbjct: 401 YNYYQAPEKRSKHIMPSEIFDDGTFTY 427

		

		

		>PF04335#VirB8 type IV secretion protein

		          Length = 227

		

		 Score =  219 bits (559), Expect = 8e-73

		 Identities = 53/230 (23%), Positives = 102/230 (44%), Gaps = 12/230 (5%)

		

		Query: 14  QVGAAVQKAVNYEVSIADLARRSEKRAWMVATVSMIITVMTAGGYYYMLPLKEKVPYLVM 73

		           ++ A  ++A ++E      A RS+K AW+VA V+  +          + PLK   PY++ 

		Sbjct: 9   ELKAYFEEAASWERDKLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVIT 68

		

		Query: 74  ADAYSGTSTIAKLEANFGGRTISTSEALARSNIARFIIARESFDLTIIGQRDWNTVSAMG 133

		            D  +G ++I       G  TI+  EA+ +  +A ++  RE +      +  ++ V  M 

		Sbjct: 69  VDRNTGEASI--AAKLHGDATITYDEAVRKYFLATYVRYREGWIAAAR-EEYFDAVMVMS 125

		

		Query: 134 STNVVNEYRALHSANNPLRPLNTYGKLRAIRINILSITLIGGKGQPYKGATVRFQRTVYD 193

		           +    + +   +  +NP  P N       + + I  ++ +GG       A V F +    

		Sbjct: 126 ARPEQDRWSRFYKTDNPQSPQNILANRTDVFVEIKRVSFLGG-----NVAQVYFTKESVT 180

		

		Query: 194 KNSTVSTLLDNKIATMGFVYQDNLEMNDSLRVENPLGFRVTDYRVDNDYS 243

		            +++  T   + +AT+ +   D     +  R +NPLG++V  YR D +  

		Sbjct: 181 GSNSTKT---DAVATIKYKV-DGTPSKEVDRFKNPLGYQVESYRADVEVP 226

		

		

		>BCTERIALGSPG#Bacterial general secretion pathway protein G

		          signature.

		          Length = 145

		

		 Score = 49.5 bits (118), Expect = 2e-10

		 Identities = 16/52 (30%), Positives = 32/52 (61%)

		

		Query: 21 RGFTLIELMIVVAVVAILAAIAYPSYSEYVRKSRRAQAKADLVEYAQLAERY 72

		          RGFTL+E+M+V+ ++ +LA++  P+      K+ + +A +D+V      + Y

		Sbjct: 8  RGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMY 59

		

		

		>BCTERIALGSPG#Bacterial general secretion pathway protein G

		          signature.

		          Length = 145

		

		 Score = 28.3 bits (63), Expect = 0.027

		 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 5/60 (8%)

		

		Query: 1  MKLRSRMSGLSLIELMIALVI-GLVLLLGVIQVFS-ASRTAAQLSEGASRAQENGRFALD 58

		          M+   +  G +L+E+M+ +VI G++  L V  +     +   Q +     A EN   ALD

		Sbjct: 1  MRATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALEN---ALD 57

		

		

		>BCTERIALGSPH#Bacterial general secretion pathway protein H

		          signature.

		          Length = 170

		

		 Score = 41.1 bits (96), Expect = 4e-07

		 Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 1/65 (1%)

		

		Query: 4  VRMRGFTLIELMVTVAVLAITAAIAYPSFQGVLRSNRVAASNNEMMALLTLSRSEAIRNG 63

		          +R RGFTL+E+M+ + ++ ++A +   +F    R +  A +     A L   +   ++ G

		Sbjct: 1  MRQRGFTLLEMMLILLLMGVSAGMVLLAF-PASRDDSAAQTLARFEAQLRFVQQRGLQTG 59

		

		Query: 64 QGSGI 68

		          Q  G+

		Sbjct: 60 QFFGV 64

		

		

		>PF07675#Cleaved Adhesin

		          Length = 1358

		

		 Score = 30.8 bits (69), Expect = 0.029

		 Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 6/97 (6%)

		

		Query: 692  EIAVAAGGEATFDVAAQVPATTPEGSSVEVTVSATSKADAKISNTASATLDVVDSIPLLT 751

		            E+++  GG  TF V AQ        +S    V A+S  +   SN A+A L+ V +   + 

		Sbjct: 1148 ELSLPGGGTLTFWVCAQ----DANYASEHYAVYASSTGNDA-SNFANALLEEVLTAKTVV 1202

		

		Query: 752  NNQR-VALAGVEGESKLYRMIVPAGTKTLSFITFGGT 787

		                 +     +G      + +PAGTK ++F  FG T

		Sbjct: 1203 TAPEAIRGTRAQGTWYQKTVQLPAGTKYVAFRHFGCT 1239

		

		

		>HTHTETR#TetR bacterial regulatory protein HTH signature.

		          Length = 215

		

		 Score = 60.0 bits (145), Expect = 1e-13

		 Identities = 35/182 (19%), Positives = 64/182 (35%), Gaps = 14/182 (7%)

		

		Query: 3   PTRVRLDATTRRAQIVEQASGLIARSGYNATSLADIAAACNVRKSTILHHFPSMADLLKA 62

		             + + +A   R  I++ A  L ++ G ++TSL +IA A  V +  I  HF   +DL   

		Sbjct: 2   ARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61

		

		Query: 63  VLLQRDAADYIAIGACPG---GGDRREVRAYLDAAVARNLQQPELLRLYVMLGAEALAPA 119

		           +    ++              G     +R  L   +   + +     L  ++  +     

		Sbjct: 62  IWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVG 121

		

		Query: 120 HPA------HGYFIERHCLAVKTL-----AGLLAWKDDPGAAALELLAFWQGLETVWLRD 168

		             A          +E +    +TL     A +L        AA+ +  +  GL   WL  

		Sbjct: 122 EMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFA 181

		

		Query: 169 PT 170

		           P 

		Sbjct: 182 PQ 183

		

		

		>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase

		           signature.

		          Length = 261

		

		 Score = 45.4 bits (107), Expect = 9e-08

		 Identities = 71/287 (24%), Positives = 102/287 (35%), Gaps = 59/287 (20%)

		

		Query: 8   IALVTGANGGMGRHCAR-MLGASNDLVLTDLAADPLAAFAGTLAEEGYTVAAQVAGDLSD 66

		           IA +TGA  G+G   AR +      +   D   + L     +L  E    A     D+ D

		Sbjct: 10  IAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARH-AEAFPADVRD 68

		

		Query: 67  PTLLARLV---EAVGGRLDVLVHAAGL-------SPAQAGWRRILQVNLVATDLLLTALA 116

		              +  +    E   G +D+LV+ AG+       S +   W     VN         +++

		Sbjct: 69  SAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128

		

		Query: 117 PAM--RPGSVAVLIASMAGHMAAELPQAAELLEHANAPGVADRMAALLASSGMSEAQSAG 174

		             M  R     V + S                  A  P  +  MAA              

		Sbjct: 129 KYMMDRRSGSIVTVGSNP----------------AGVPRTS--MAA-------------- 156

		

		Query: 175 MVYALSKQAVIRLAERKAAEWPQA--RVVSLSPGLIATPMGR--LEGEDAQTAVI----- 225

		             YA SK A +   +    E  +   R   +SPG   T M       E+    VI     

		Sbjct: 157 --YASSKAAAVMFTKCLGLELAEYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLE 214

		

		Query: 226 --REAMPIKRWGTGMDIAAAVAFLVSPAASFITGCDLRIDGGAIAGL 270

		             +  +P+K+     DIA AV FLVS  A  IT  +L +DGGA  G+

		Sbjct: 215 TFKTGIPLKKLAKPSDIADAVLFLVSGQAGHITMHNLCVDGGATLGV 261

		

		

		>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase

		           signature.

		          Length = 261

		

		 Score = 90.9 bits (225), Expect = 5e-24

		 Identities = 72/256 (28%), Positives = 106/256 (41%), Gaps = 18/256 (7%)

		

		Query: 3   LQNKVAIITGGADGIGAGLTRKFVEEGAKVLFVDVKDDKGRALEGELGAHARF---LKED 59

		           ++ K+A ITG A GIG  + R    +GA +  VD   +K   +   L A AR       D

		Sbjct: 6   IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65

		

		Query: 60  LTTPGMADRILAAAREAFGDALDILVNNAQASKPQLL--LDADQGSIDLAMNSGLWATFH 117

		           +      D I A      G  +DILVN A   +P L+  L  ++     ++NS     F+

		Sbjct: 66  VRDSAAIDEITARIEREMG-PIDILVNVAGVLRPGLIHSLSDEEWEATFSVNST--GVFN 122

		

		Query: 118 LMR-TCHPALATSKGAIVNFASGAGLDGLPTQGAYAMSKEAIRGLTRTAANEWGKDGIRI 176

		             R      +    G+IV   S        +  AYA SK A    T+    E  +  IR 

		Sbjct: 123 ASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRC 182

		

		Query: 177 NVVCPAAETAGFLW--WKGENPEA------AKAMEAQVPLGRVGDVMKDVAPIVVFLASD 228

		           N+V P +      W  W  EN          +  +  +PL ++     D+A  V+FL S 

		Sbjct: 183 NIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKP-SDIADAVLFLVSG 241

		

		Query: 229 AARYMTGQTVMADGGA 244

		            A ++T   +  DGGA

		Sbjct: 242 QAGHITMHNLCVDGGA 257

		

		

		>BCTERIALGSPC#Bacterial general secretion pathway protein C

		           signature.

		          Length = 272

		

		 Score = 27.6 bits (61), Expect = 0.049

		 Identities = 24/101 (23%), Positives = 35/101 (34%), Gaps = 23/101 (22%)

		

		Query: 24  AQTAPSYTIPNDGTLLNVSAEADAKRIPDIATLSAGVVTQAADGNAAMRQNAEQMSKVMA 83

		           AQ        ND TL  VS E +           AG +  +   N         ++ VMA

		Sbjct: 53  AQARQQPVTLNDFTLFGVSPEKNK----------AGALDASQMSNLPPSTLNLSLTGVMA 102

		

		Query: 84  ---AIKAAGIADKDVQTTGINLSPQYTYKENEAPKINGYQA 121

		                ++  I  KD        + Q++   NE   + GY A

		Sbjct: 103 GDDDSRSIAIISKD--------NEQFSRGVNEE--VPGYNA 133

		

		

		>PF03544#Gram-negative bacterial tonB protein

		          Length = 243

		

		 Score = 72.7 bits (178), Expect = 9e-18

		 Identities = 39/187 (20%), Positives = 61/187 (32%), Gaps = 16/187 (8%)

		

		Query: 46  AVPQQPAPKERWVMPITIETPPPPVFPIEVKFKPKATHTSPTPVPVQVQTPVISEPAVVD 105

		           A  + P   +    P+    P P   P   K  P      P P P     PV        

		Sbjct: 58  ADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEK-PKPKPKPKPKPVKKVEQPKR 116

		

		Query: 106 NATFALPAVSEAVSDSAPAIAAPSGPVE---------AGQLQYLSSPAPSYPMAALRAGQ 156

		           +        +    ++APA    S             A   + LS   P YP  A     

		Sbjct: 117 DVKPVESRPASPFENTAPARPTSSTATAATSKPVTSVASGPRALSRNQPQYPARAQALRI 176

		

		Query: 157 QGTVLLRVLVGTDGRPAEVSVQTSSGHRALDLAARSQVLRNWRFQPAMQNGQAVQAYGLV 216

		           +G V ++  V  DGR   V + ++      +   ++ + R WR++P       V     V

		Sbjct: 177 EGQVKVKFDVTPDGRVDNVQILSAKPANMFEREVKNAM-RRWRYEPGKPGSGIV-----V 230

		

		Query: 217 PVSFSLN 223

		            + F +N

		Sbjct: 231 NILFKIN 237

		

		

		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

		           signature.

		          Length = 478

		

		 Score = 47.9 bits (114), Expect = 4e-08

		 Identities = 21/161 (13%), Positives = 45/161 (27%), Gaps = 7/161 (4%)

		

		Query: 65  SGGRIAAVLVDVGDRVQKGQVLARLDAEPLQLRQQQADANLRAAMAQSGERQLQLRQQHA 124

		               +  ++V  G+ V+KG VL +L A   +    +  ++L  A  +    Q+  R    

		Sbjct: 103 ENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIEL 162

		

		Query: 125 MFDDGASSAATLTAARAAADAATAQLQVAKADLALARRASRLGELRAPFDGAVVARLQQP 184

		                            + +       + K   +  +      EL         A     

		Sbjct: 163 NKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNL---DKKRAERLTV 219

		

		Query: 185 QADVGAGQAVLQLEGQAHLQLLANLPPVAAAGLTPGQTVQA 225

		            A +   + + ++E       L +   +          V  

		Sbjct: 220 LARINRYENLSRVEKSR----LDDFSSLLHKQAIAKHAVLE 256

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 89.9 bits (223), Expect = 6e-23

		 Identities = 38/141 (26%), Positives = 66/141 (46%), Gaps = 3/141 (2%)

		

		Query: 1   MTGKKVLLVEDDADSASILDAYLRRDGFDVAIAGDGERAIHLHRQWAPDLVLLDVMLPRL 60

		           MTG  +L+ +DDA   ++L+  L R G+DV I  +             DLV+ DV++P  

		Sbjct: 1   MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60

		

		Query: 61  SGIEVLSAIR-RASDTPVIMVTAIGDEPEKLGALRYGADDYVVKPYSPKEVVARVHAVLR 119

		           +  ++L  I+    D PV++++A       + A   GA DY+ KP+   E++  +   L 

		Sbjct: 61  NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120

		

		Query: 120 RSVAVRAPGEPLRHGRLSVDL 140

		                R P +     +  + L

		Sbjct: 121 E--PKRRPSKLEDDSQDGMPL 139

		

		

		>BLACTAMASEA#Beta-lactamase class A signature.

		          Length = 286

		

		 Score = 35.2 bits (81), Expect = 5e-04

		 Identities = 24/125 (19%), Positives = 48/125 (38%), Gaps = 19/125 (15%)

		

		Query: 4   SLVTTQAAELPAGMQQFDAQMERVRKQFDV-PGIAVAIVKDGQVVLERGYGVREIGKPAP 62

		           SL+ T    + A  Q  + Q++    Q     G+    +  G+ +    +          

		Sbjct: 10  SLLATLPLAVHASPQPLE-QIKLSESQLSGRVGMIEMDLASGRTLT--AW---------- 56

		

		Query: 63  VQADTLFAIASNTKAFTAASLSILADEGKLSLDDKVI----DHLPWFRMSDPYVSGEMRV 118

		            +AD  F + S  K     ++    D G   L+ K+     D + +  +S+ +++  M V

		Sbjct: 57  -RADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTV 115

		

		Query: 119 RDLLA 123

		            +L A

		Sbjct: 116 GELCA 120

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 67.2 bits (164), Expect = 4e-13

		 Identities = 24/116 (20%), Positives = 53/116 (45%), Gaps = 2/116 (1%)

		

		Query: 2310 QVPLVMVVDDSLTMRKVTSRVLERHNLDVTTARDGVEALELLQERVPDLMLLDIEMPRMD 2369

		                ++V DD   +R V ++ L R   DV    +       +     DL++ D+ MP  +

		Sbjct: 2    TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61

		

		Query: 2370 GYELATAMRADPRFKAVPIVMITSRSGEKHRQRAFEIGVQRYLGKPYQELDLMRNV 2425

		             ++L   ++       +P++++++++      +A E G   YL KP+   +L+  +

		Sbjct: 62   AFDLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGII 115

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 87.6 bits (217), Expect = 1e-23

		 Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 2/116 (1%)

		

		Query: 2   ARIILIEDSPTDRAVFSQWLEKAGHTVVATDNAEEGLALIRSQAPDLVLMDVVLPGMSGF 61

		           A I++ +D    R V +Q L +AG+ V  T NA      I +   DLV+ DVV+P  + F

		Sbjct: 4   ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63

		

		Query: 62  QATRALARDQATKDIPVLLVSTKGMETDKAWGLRQGASDYIVKPPREDDLIARIKQ 117

		                + + +   D+PVL++S +           +GA DY+ KP    +LI  I +

		Sbjct: 64  DLLPRIKKAR--PDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 73.3 bits (180), Expect = 2e-18

		 Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 2/115 (1%)

		

		Query: 15  KVMVIDDSKTIRRTAETLLKREGCEVVTATDGFEALAKIADQQPQIIFVDIMMPRLDGYQ 74

		            ++V DD   IR      L R G +V   ++       IA     ++  D++MP  + + 

		Sbjct: 5   TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64

		

		Query: 75  TCALIKGNQLFKSTPVIMLSSKDGLFDKARGRIVGSEQYLTKPFTREELLSAIRT 129

		               IK  +     PV+++S+++      +    G+  YL KPF   EL+  I  

		Sbjct: 65  LLPRIK--KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117

		

		

		>PF03544#Gram-negative bacterial tonB protein

		          Length = 243

		

		 Score =  118 bits (296), Expect = 5e-34

		 Identities = 40/262 (15%), Positives = 83/262 (31%), Gaps = 37/262 (14%)

		

		Query: 11  MDERRRLTATLLISLLLHGVLILGVGFAVSEDAPLVPTLDVIFSQTSTPLTPRQADFLAQ 70

		           +D  RR     L+S+ +HG ++ G+ +        +P           P  P     +A 

		Sbjct: 8   LDLPRRFPWPTLLSVCIHGAVVAGLLYTSVHQVIELPA----------PAQPISVTMVAP 57

		

		Query: 71  ANQQGGGNHATAQRPRDSQPGVVPQDRSGLAPQAQRATTLQAPEPTQTRVVASRRGEQAV 130

		           A                  P   P+      P+ +         P              +

		Sbjct: 58  A--------DLEPPQAVQPP---PEPVVEPEPEPEPIPEPPKEAPVV------------I 94

		

		Query: 131 PTPQPNPQTDLLSPTDAQRVQRDAEMARLAAEVHLRSEQYAKRPNRKFVSASTREYAYAN 190

		             P+P P+         ++ +RD +           +   A+  +    +A+++      

		Sbjct: 95  EKPKPKPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATSKPVTSVA 154

		

		Query: 191 YLRAWVDRAERVGNLNYPDEARRRRLGGKVVISVGVRRDGSVESSRVLVSSGTPALDAAA 250

		                + R        YP  A+  R+ G+V +   V  DG V++ ++L +      +   

		Sbjct: 155 SGPRALSRN----QPQYPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAKPANMFEREV 210

		

		Query: 251 LRVVQLAQPFPPLPRTKDDVDI 272

		              ++  +  P  P +   V+I

		Sbjct: 211 KNAMRRWRYEPGKPGSGIVVNI 232

		

		

		>BACINVASINC#Salmonella/Shigella invasin protein C signature.

		          Length = 409

		

		 Score = 30.2 bits (67), Expect = 0.004

		 Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 9/132 (6%)

		

		Query: 37  PTQRLLLIEREAGVDDTELSVQPLRDPQ---VDDLRETAKSKRQAGDLAGAAASLDQAVG 93

		            + + +  E +A +     SV+     +   +D  R  A+  +  GDL    +     + 

		Sbjct: 280 NSNKQISPEHQAILSKRLESVESDIRLEQNTMDMTRIDARKMQMTGDLIMKNSVTVGGIA 339

		

		Query: 94  LVSGDPAILQERAEVAVLQADWPAAERFAKQAIELGSKTGPLCRRHWATIEQSRLARGEK 153

		             S   A  QER+E  + Q +   A   + +A E   K+  L +    T+E         

		Sbjct: 340 GASRQYAATQERSEQQISQVNNRVASTASDEARESSRKSTSLIQEMLKTMESI------N 393

		

		Query: 154 ENAASAKSQIAG 165

		           ++ ASA + IAG

		Sbjct: 394 QSKASALAAIAG 405

		

		

		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.

		          Length = 1541

		

		 Score = 35.4 bits (81), Expect = 6e-04

		 Identities = 24/140 (17%), Positives = 45/140 (32%), Gaps = 14/140 (10%)

		

		Query: 242  RLAPAARDFTAVLAAE--PADAAAQRGLEQVAGEYAAQAGRQAADFQFDAALQSLQEAKT 299

		              APA    T    AE    ++      EQ A E  AQ    A            +EAK+

		Sbjct: 1027 PPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVA------------KEAKS 1074

		

		Query: 300  LLPGAAAIAQAEQAIARARDAQRSPETGLSRSARERRLRALLQRVAAAEAQQQWMTPPGA 359

		             +       +  Q+ +  ++ Q +     +   +E + +   ++          ++P   

		Sbjct: 1075 NVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQE 1134

		

		Query: 360  SAYDAVRAAQALAPRDPRVL 379

		             +      A+     DP V 

		Sbjct: 1135 QSETVQPQAEPARENDPTVN 1154

		

		

		>PF06580#Sensor histidine kinase

		          Length = 349

		

		 Score = 37.2 bits (86), Expect = 1e-04

		 Identities = 16/95 (16%), Positives = 36/95 (37%), Gaps = 16/95 (16%)

		

		Query: 431 ILTALVHNALKYG-RVMEEPARVKLRVERMERMAVIDVVDRGPGIPETVAAQLFRPFYTT 489

		           ++  LV N +K+G   + +  ++ L+  +      ++V + G    +             

		Sbjct: 259 LVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALK------------N 306

		

		Query: 490 SEHGTGLGLYIAQELCRA---NQAQLDYVSVPGGG 521

		           ++  TG GL   +E  +     +AQ+      G  

		Sbjct: 307 TKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKV 341

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score =  511 bits (1317), Expect = 0.0

		 Identities = 165/474 (34%), Positives = 253/474 (53%), Gaps = 17/474 (3%)

		

		Query: 6   SALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIE 65

		           + LV DD+  IR +L   L R G  +   +N A     +A    DL +TD+ +PD N  +

		Sbjct: 5   TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64

		

		Query: 66  LVTEIAKHYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNR 125

		           L+  I K  P  PV +++A  +   A++A + GA+D++ KP D+  L G++  AL    R

		Sbjct: 65  LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124

		

		Query: 126 DRPAPPAPPPEQASRLLGDSSAMESLRATIGKVARSQAPVYIVGESGVGKELVARTIHEQ 185

		                     +    L+G S+AM+ +   + ++ ++   + I GESG GKELVAR +H+ 

		Sbjct: 125 RPSKLEDDSQDGMP-LVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHDY 183

		

		Query: 186 GARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLDEVAEL 245

		           G R  GPFV +N  AIP +L+ESE FGH+KG+FTGA     G F+ A GGTLFLDE+ ++

		Sbjct: 184 GKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDM 243

		

		Query: 246 PLQMQVKLLRAIQEKSIRPVGASGESLVDVRILSATHKNLGDLVSDGRFRHDLYYRINVI 305

		           P+  Q +LLR +Q+     VG       DVRI++AT+K+L   ++ G FR DLYYR+NV+

		Sbjct: 244 PMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLNVV 303

		

		Query: 306 ELRVPPLRERSGDLPQLAAAIIARLAHSHGRPIPLLTQSSLDALDQYGFPGNVRELENIL 365

		            LR+PPLR+R+ D+P L    + + A   G  +    Q +L+ +  + +PGNVRELEN++

		Sbjct: 304 PLRLPPLRDRAEDIPDLVRHFVQQ-AEKEGLDVKRFDQEALELMKAHPWPGNVRELENLV 362

		

		Query: 366 ERALALAEDDQISASDLRLPAH---------------GGHRLAASPGSAAVEPREAVVDI 410

		            R  AL   D I+   +                    G   ++ +      +   +  D 

		Sbjct: 363 RRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFGDA 422

		

		Query: 411 DPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME 464

		            P S      + ++E   I  AL   R N+ K A  LG+    LR K+++LG+ 

		Sbjct: 423 LPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGVS 476

		

		

		>BCTERIALGSPG#Bacterial general secretion pathway protein G

		          signature.

		          Length = 145

		

		 Score = 29.9 bits (67), Expect = 0.002

		 Identities = 10/30 (33%), Positives = 18/30 (60%)

		

		Query: 1  MSYRRGFSTIELMISVAIVAILAVLAFPAY 30

		             +RGF+ +E+M+ + I+ +LA L  P  

		Sbjct: 4  TDKQRGFTLLEIMVVIVIIGVLASLVVPNL 33

		

		

		>BCTERIALGSPG#Bacterial general secretion pathway protein G

		          signature.

		          Length = 145

		

		 Score = 42.2 bits (99), Expect = 9e-08

		 Identities = 16/44 (36%), Positives = 29/44 (65%)

		

		Query: 1  MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTVRARTTEALA 44

		            KQ+GFTL+E+M+V+ II +LA++ +P       +A   +A++

		Sbjct: 4  TDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVS 47

		

		

		>BCTERIALGSPF#Bacterial general secretion pathway protein F

		           signature.

		          Length = 408

		

		 Score =  371 bits (953), Expect = e-128

		 Identities = 115/404 (28%), Positives = 211/404 (52%), Gaps = 9/404 (2%)

		

		Query: 23  FVWEGTDKRGVKMKGEQNAKSINMLRAELRRQGITPNIVKLK--------PKPLFGAAGK 74

		           + ++  D +G K +G Q A S    R  LR +G+ P  V              L      

		Sbjct: 4   YHYQALDAQGKKCRGTQEADSARQARQLLRERGLVPLSVDENRGDQQKSGSTGLSLRRKI 63

		

		Query: 75  KITAKEIAFFSRQMATMMKSGVPIVGSLEIIGEGHKNPRMRKMVGQVRTDIEGGSSLYEA 134

		           +++  ++A  +RQ+AT++ + +P+  +L+ + +  + P + +++  VR+ +  G SL +A

		Sbjct: 64  RLSTSDLALLTRQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSLADA 123

		

		Query: 135 ISKHPVQFDELYRNLVRAGEGAGVLETVLDTIASYKENIEALKGKIKKALFYPAMVIAVA 194

		           +   P  F+ LY  +V AGE +G L+ VL+ +A Y E  + ++ +I++A+ YP ++  VA

		Sbjct: 124 MKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVLTVVA 183

		

		Query: 195 ILVSAILLIFVVPQFEEVFKGFGADLPAFTQLLVNASRFMVSYWWLMLLGTLGAIFGFTF 254

		           I V +ILL  VVP+  E F      LP  T++L+  S  + ++   MLL  L     F  

		Sbjct: 184 IAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLALLAGFMAFRV 243

		

		Query: 255 AYKRSPAMQHRMDRLILKVPVVGQIMHNSSIARFARTTAVTFKAGVPLVEALSIVAGATG 314

		              R    +    R +L +P++G+I    + AR+ART ++   + VPL++A+ I      

		Sbjct: 244 ML-RQEKRRVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAMRISGDVMS 302

		

		Query: 315 NKVYEEAVLRMRDDVSVGYPVNVSMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFE 374

		           N      +    D V  G  ++ +++Q  LFP M+  M A GE +G LD+ML + A+  +

		Sbjct: 303 NDYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMIASGERSGELDSMLERAADNQD 362

		

		Query: 375 QEVNNAVDALSSLLEPLIMVFIGTIVGGMVIGMYLPIFKLASVV 418

		           +E ++ +     L EPL++V +  +V  +V+ +  PI +L +++

		Sbjct: 363 REFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPILQLNTLM 406

		

		

		>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family

		           signature.

		          Length = 290

		

		 Score =  331 bits (851), Expect = e-117

		 Identities = 130/282 (46%), Positives = 176/282 (62%), Gaps = 1/282 (0%)

		

		Query: 1   MAFLDQHPGLGFPAAAGLGLLIGSFLNVVILRLPKRMEWQWRRDAREILELPDI-YEPPP 59

		           +      P L F       L+IGSFLNVVI RLP  +E +W+ + R      D   + PP

		Sbjct: 5   LELAHGLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRSYFNPDDEGVDEPP 64

		

		Query: 60  PGIVVEPSHDPVTGDKLKWWENIPLFSWLMLRGKSRYSGKPISIQYPLVELLTSILCVAS 119

		             ++V  S  P     +   ENIPL SWL LRG+ R    PIS +YPLVELLT++L VA 

		Sbjct: 65  YNLMVPRSCCPHCNHPITALENIPLLSWLWLRGRCRGCQAPISARYPLVELLTALLSVAV 124

		

		Query: 120 VWRFGFGWQGFGAIVLSCFLVAMSGIDLRHKLLPDQLTLPLMWLGLVGSMDNLYMPAKPA 179

		                 GW    A++L+  LVA++ IDL   LLPDQLTLPL+W GL+ ++   ++    A

		Sbjct: 125 AMTLAPGWGTLAALLLTWVLVALTFIDLDKMLLPDQLTLPLLWGGLLFNLLGGFVSLGDA 184

		

		Query: 180 LLGAAVGYVSLWTVWWLFKQLTGKEGMGHGDFKLLAALGAWCGLKGILPIILISSLVGAI 239

		           ++GA  GY+ LW+++W FK LTGKEGMG+GDFKLLAALGAW G + +  ++L+SSLVGA 

		Sbjct: 185 VIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSLVGAF 244

		

		Query: 240 LGSAWLVAKGRDRATPIPFGPYLAIAGWVVFFWGNDLVDGYL 281

		           +G   ++ +   ++ PIPFGPYLAIAGW+   WG+ +   YL

		Sbjct: 245 MGIGLILLRNHHQSKPIPFGPYLAIAGWIALLWGDSITRWYL 286

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 88.7 bits (220), Expect = 1e-22

		 Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 2/119 (1%)

		

		Query: 2   RILVIEDNSDIAANLGDYLEDRGHTVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 61

		            ILV +D++ I   L   L   G+ V   ++  T        + D +V D+ +P  +  +

		Sbjct: 5   TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64

		

		Query: 62  VCRKLRNEARKQTPVLMLTARDSLDNKLAGFDSGADDYLIKPFALQE-VEVRLNALSRR 119

		           +  +++ +AR   PVL+++A+++    +   + GA DYL KPF L E + +   AL+  

		Sbjct: 65  LLPRIK-KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122

		

		

		>FbpA_PF05833#Fibronectin-binding protein

		          Length = 577

		

		 Score = 26.8 bits (59), Expect = 0.033

		 Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 3/51 (5%)

		

		Query: 14  KAQLLEELRKLEQEEAQLKYAQTLEAFDQVVEVLTQFG---SRFNAKQKSQ 61

		             Q  EEL  L      +  A   +  +++ + L + G    +   K K  

		Sbjct: 404 LLQNEEELNYLYSVLTNINNADNYDEIEEIKKELIETGYIKFKKIYKSKKS 454

		

		

		>CHLAMIDIAOM6#Chlamydia cysteine-rich outer membrane protein 6

		           signature.

		          Length = 547

		

		 Score = 34.7 bits (79), Expect = 2e-04

		 Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 16/106 (15%)

		

		Query: 66  FDLNVDNTGNATAYDITVHFDPPLTNGEARSRDEIPLQ-RLSVLKPGQGLSSYLCEFALL 124

		           + +N+ N G ATA ++ V  + P+ +G A S  +  L   L  ++PG+            

		Sbjct: 229 YKINIVNQGTATARNVVV--ENPVPDGYAHSSGQRVLTFTLGDMQPGEH----------- 275

		

		Query: 125 KGKVYQVEITWRKAATATEIESNSYTLSMNDQSGVSRLGNEPLFQL 170

		             +   VE    K   AT I + SY     + + V+ + NEP  Q+

		Sbjct: 276 --RTITVEFCPLKRGRATNIATVSYCGGHKNTASVTTVINEPCVQV 319

		

		

		>adhesinb#Adhesin B signature.

		          Length = 310

		

		 Score = 28.7 bits (64), Expect = 0.004

		 Identities = 11/32 (34%), Positives = 17/32 (53%)

		

		Query: 1  MKNARIALVVLTMALGLTACSGKPSSDNAKEA 32

		          MK  R  +++L   +GL ACS + SS     +

		Sbjct: 1  MKKCRFLVLLLLAFVGLAACSSQKSSTETGSS 32

		

		

		>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase

		           signature.

		          Length = 261

		

		 Score = 61.2 bits (148), Expect = 2e-13

		 Identities = 53/212 (25%), Positives = 84/212 (39%), Gaps = 7/212 (3%)

		

		Query: 4   VLIIGATSAIAEATARRYAARGAAIHLLGRQATRLETIAADLTTRGGRSSIGVLDVNDSA 63

		             I GA   I EA AR  A++GA I  +     +LE + + L      +     DV DSA

		Sbjct: 11  AFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDSA 70

		

		Query: 64  RHGEILDAAWAALGGVDVVLIAHGTLPDQAACNASVELSLREFATNGTSTVALCAAIVP- 122

		              EI       +G +D+++   G L      + S E     F+ N T       ++   

		Sbjct: 71  AIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSKY 130

		

		Query: 123 -RLRSGATLAVISSVAGDRGRASNYLYGSAKAAVTAYLSGLGQRLRPEGINVLTIKPGFV 181

		              R   ++  + S      R S   Y S+KAA   +   LG  L    I    + PG  

		Sbjct: 131 MMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPGST 190

		

		Query: 182 DTPMTAAFKKGALWAKPDQIAKGILGAVDKRR 213

		           +T M     + +LWA  +   + I G+++  +

		Sbjct: 191 ETDM-----QWSLWADENGAEQVIKGSLETFK 217

		

		

		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

		          Length = 334

		

		 Score = 54.4 bits (131), Expect = 2e-10

		 Identities = 62/292 (21%), Positives = 108/292 (36%), Gaps = 58/292 (19%)

		

		Query: 7   KIVITGAAGLVGQNLIVELEQQGYTQLVAID----------KHAHNLQILRELHPAVRVV 56

		           K ++TGAAG +G ++   L + G+ Q+V ID          K A  L++L +  P  +  

		Sbjct: 2   KYLVTGAAGFIGFHVSKRLLEAGH-QVVGIDNLNDYYDVSLKQA-RLELLAQ--PGFQFH 57

		

		Query: 57  HADLAEAGEWAHEFE--GAACVAQLHAQI----TGKTTELFTRNNLVATSHVLDACRAAN 110

		             DLA+       F       V     ++    + +    +  +NL    ++L+ CR   

		Sbjct: 58  KIDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNK 117

		

		Query: 111 VPYLVHISSSVVNSVAKDD--------------YTKTKRAQEEMVVAS----GLRHCVLR 152

		           + +L++ SSS V  + +                Y  TK+A E M        GL    LR

		Sbjct: 118 IQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLR 177

		

		Query: 153 PTLMFG-WFDPKH-LGWLSRFMAKTPVFPIPGDGKFMRQPLYERDFCRCIAKCIEREP-- 208

		              ++G W  P   L   ++ M +     +   GK  R   Y  D    I +  +  P  

		Sbjct: 178 FFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPHA 237

		

		Query: 209 ----------------DGEVYDIVGDTRVDYVDIIKTIKRVKKLHTLIVHIP 244

		                              VY+I   + V+ +D I+ ++    +      +P

		Sbjct: 238 DTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLP 289

		

		

		>PF05704#Capsular polysaccharide synthesis protein

		          Length = 307

		

		 Score = 32.9 bits (75), Expect = 0.005

		 Identities = 5/30 (16%), Positives = 22/30 (73%), Gaps = 2/30 (6%)

		

		Query: 501 LLKQCIDSILERTDYPNYEIVVIDNDSQEQ 530

		           +++QC+ S+  + +  ++++++ID ++ ++

		Sbjct: 85  IVQQCVASV--KKNSGDFKVIIIDGNNYKE 112