>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 42.2 bits (99), Expect = 6e-07 Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 4/96 (4%) Query: 176 KEEYDALDTLENNSVAHIVAIKQEQVIGTMRLIYA-NRTMKIGRLAVLKPFRNKKVASKL 234 +++ + +E A + + IG +++ N I +AV K +R K V + L Sbjct: 51 EDDDMDVSYVEEEGKAAFLYYLENNCIGRIKIRSNWNGYALIEDIAVAKDYRKKGVGTAL 110 Query: 235 VRYAMIQAENNGIHLIELNAQ---LSAINIYKRQGF 267 + A+ A+ N + L Q +SA + Y + F Sbjct: 111 LHKAIEWAKENHFCGLMLETQDINISACHFYAKHHF 146
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.8 bits (67), Expect = 0.033 Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 2/73 (2%) Query: 18 EIVSWFVKEGDTIKEDEPLLEVQNDKL-VQEIPSPVAGTITKIMV-APGTVATVGDDLVE 75 EI+ + D I L ++ I +PV+ + ++ V G V T + L+ Sbjct: 299 EILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMV 358 Query: 76 IVAEGAVASAPAK 88 IV E A Sbjct: 359 IVPEDDTLEVTAL 371
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 27.3 bits (60), Expect = 0.049 Identities = 30/152 (19%), Positives = 48/152 (31%), Gaps = 6/152 (3%) Query: 49 ANSTTPESTKDKET--VAQPTKETQKDIKDETKEESKEETTKTEPVKEKESVPIEYKNAL 106 A S +T+ E TKETQ ET KEE K E ++ + VP Sbjct: 1072 AKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVE-TEKTQEVPKVTSQVS 1130 Query: 107 IKGQQYAERMYMSERGVYDQLVSEYGENFPEEAAQYAIENIKADYNKNALEKAKTYQSRM 166 K +Q +E + E + E + + N + + Sbjct: 1131 PKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTT-- 1188 Query: 167 SMSRDSIWEQLVSEHGENFTEEQANYALENLP 198 + +S+ E + T+ N N P Sbjct: 1189 VNTGNSVVENPENTTPAT-TQPTVNSESSNKP 1219
>PF05272#Virulence-associated E family protein Length = 892 Score = 34.7 bits (79), Expect = 6e-04 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%) Query: 19 VILYGPEGIGKST-FASMFPNPLFSDTE 45 V+L G GIGKST ++ FSDT Sbjct: 599 VVLEGTGGIGKSTLINTLVGLDFFSDTH 626
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 37.9 bits (88), Expect = 2e-04 Identities = 27/161 (16%), Positives = 53/161 (32%), Gaps = 31/161 (19%) Query: 341 PEPLIEVFDNLPPLSPPLIEGVLRQGHKMLMAGPSKAGKSFALIGLTIAIAEGSKWFGWQ 400 P L+ V N + V ++ K G S + I TI+ A G + Sbjct: 709 PASLVSVRPNGLEDTAQFKLEVDQE--KA-----QALGVSLSDINQTISTALGGTYVNDF 761 Query: 401 CTQGRVLYVNLELDRASALHRFKDVYKSLGIKPKNLKNIDIWNLRGKVVPMDKLA----- 455 +GRV + ++ D P+++ + + + G++VP Sbjct: 762 IDRGRVKKLYVQADA--------KFRML----PEDVDKLYVRSANGEMVPFSAFTTSHWV 809 Query: 456 --PKLIRRAQKQGYIAVIIDPIYKVITGD-----ENSAEQM 489 + R + + + +GD EN A ++ Sbjct: 810 YGSPRLERYNGLPSMEIQGEAAPGTSSGDAMALMENLASKL 850
>SECYTRNLCASE#Preprotein translocase SecY subunit signature. Length = 437 Score = 27.4 bits (61), Expect = 0.028 Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 2/41 (4%) Query: 118 GAYLSFLTIVLLFSLGLLALYLNRDLAGYGLLISGIVSIAM 158 YL + +V +L N G +LI IV + + Sbjct: 379 SLYLGLIALVPTMALVGFGASQNFPFGGTSILI--IVGVGL 417
>ENTEROTOXINA#Heat-labile enterotoxin A chain signature. Length = 258 Score = 29.6 bits (66), Expect = 0.021 Identities = 13/53 (24%), Positives = 21/53 (39%) Query: 405 FPHPDEQPWVNDLIAELLAFPNGANDDQVDALTQALHRIYLSKKKVKTRRGLF 457 E+PW++ D + TQ L IYL + + K +R +F Sbjct: 189 HQAWREEPWIHHAPQGCGNSSRTITGDTCNEETQNLSTIYLREYQSKVKRQIF 241
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 31.0 bits (70), Expect = 0.012 Identities = 13/84 (15%), Positives = 30/84 (35%), Gaps = 7/84 (8%) Query: 236 LVAAILAIYGANVDDEDMNSIKENRVIM---FPEGSKAEYLIKAMDEDSIEVLKKSIVDD 292 L+ A + + + + + + P G+ E K +D+ + K+ + Sbjct: 546 LIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQ-VTDYYLKNEKAN 604 Query: 293 IYTVTMTPNLSDEKFAGNASGVAL 316 + +V S F+G A + Sbjct: 605 VESVFTVNGFS---FSGQAQNAGM 625
>BINARYTOXINA#Clostridial binary toxin A signature. Length = 454 Score = 36.2 bits (83), Expect = 2e-04 Identities = 34/168 (20%), Positives = 65/168 (38%), Gaps = 23/168 (13%) Query: 289 DLVQSLELDEISLIQSYSRDLYQDLNRYLRGEFEFAPDIFKINAR--KLNNALNRHELKE 346 D L +E++ + Y R Y +N YL +++++ + NAL + Sbjct: 271 DWSNKLTPNELADVNDYMRGGYTAINNYLISNGPLNNPNPELDSKVNNIENALKLTPIPS 330 Query: 347 DALLRRGVSGV-----------------TIEQMGIKGLG-EVQLKGFTSTTINPNISMLF 388 + ++ R I+ K G + F ST+I +++M Sbjct: 331 NLIVYRRSGPQEFGLTLTSPEYDFNKIENIDAFKEKWEGKVITYPNFISTSIG-SVNMSA 389 Query: 389 MHKQPKKVYMEFLAPKGTKGLYISNLAEYGSEQEFLLPHNTRINVESI 436 K +K+ + PK + G Y+S + Y E E LL H ++ + + Sbjct: 390 FAK--RKIILRINIPKDSPGAYLSAIPGYAGEYEVLLNHGSKFKINKV 435
>TRNSINTIMINR#Translocated intimin receptor (Tir) signature. Length = 549 Score = 29.7 bits (66), Expect = 0.008 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 7/51 (13%) Query: 59 SKALKDAVEAAIAEQKRMAALTEEERKEEARKLADQAVAQKQKELDEKILR 109 S LKD + IA+Q + A E AR+ A ++ AQ Q+ +++ R Sbjct: 310 SGELKDDIVEQIAQQAKEAG-------EVARQQAVESNAQAQQRYEDQHAR 353
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 28.4 bits (63), Expect = 0.038 Identities = 11/49 (22%), Positives = 21/49 (42%) Query: 215 KDFTGSGIVMTNASVPRGKVYATAVDNINLMYIDVNGEAKKVFEGKPVV 263 G ++MT+ S G++YA A + + G+A + +G Sbjct: 122 TSLRGGNLIMTSLSGADGQIYAVAQGALIVNGFSAQGDAATLTQGVTTS 170
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 100 bits (250), Expect = 2e-31 Identities = 40/89 (44%), Positives = 50/89 (56%) Query: 6 NKKLLSESIAGKLDISKKQANEFIETFLDEVKEILENKGTVDLAGFGKFEVRHRAERDGF 65 NK+ L +A +++KK + ++ V L V L GFG FEVR RA R G Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGR 62 Query: 66 NPQTKEKIRIAASHSVGFKPAKALKDAVK 94 NPQT E+I+I AS FK KALKDAVK Sbjct: 63 NPQTGEEIKIKASKVPAFKAGKALKDAVK 91
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 31.0 bits (70), Expect = 0.012 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 8/77 (10%) Query: 46 TTWLTKDLRFIDTGGIQMEGQPFQEEIKMQVDIAIDEADIILFVVSAKEGMTTDDEFIAR 105 W + IDT P + +V ++ D + ++SAK+G+ + Sbjct: 63 FQWENTKVNIIDT--------PGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFH 114 Query: 106 LLRQTNKPVIIAANKVD 122 LR+ P I NK+D Sbjct: 115 ALRKMGIPTIFFINKID 131
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 42.6 bits (100), Expect = 7e-08 Identities = 22/57 (38%), Positives = 26/57 (45%) Query: 73 AEINDFVMNASCRGKGYGSALLNHAEAYAIEKGALQLELTTNKNRIRAHEFYTAHGF 129 A I D + R KG G+ALL+ A +A E L L T I A FY H F Sbjct: 90 ALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHF 146
>CHLAMIDIAOMP#Chlamydia major outer membrane protein signature. Length = 393 Score = 29.6 bits (66), Expect = 0.014 Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 5/68 (7%) Query: 120 AARGASSVVCLTIGTGVGGALMFEGNLWHGASG-----TAGEVGYIPIKNAYFQDLASTT 174 A ASS+ L +G +LM +G LW G G I ++ Y+ D Sbjct: 13 ALSSASSLQALPVGNPAEPSLMIDGILWEGFGGDPCDPCTTWCDAISMRMGYYGDFVFDR 72 Query: 175 ALVEDVMK 182 L DV K Sbjct: 73 VLKTDVNK 80
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 44.6 bits (105), Expect = 1e-07 Identities = 10/58 (17%), Positives = 27/58 (46%), Gaps = 1/58 (1%) Query: 19 QAAKEIVNTEGMQAITIRKVADIAGYNSATLYNYFENLDQLIAFAMIHTITDYLSDLE 76 A + + +G+ + ++ ++A AG +Y +F++ L + + + +LE Sbjct: 18 DVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS-EIWELSESNIGELE 74
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 283 bits (726), Expect = 2e-87 Identities = 104/458 (22%), Positives = 184/458 (40%), Gaps = 93/458 (20%) Query: 417 GKPVILVRLETSPEDIEGMHL--AEGILTSRGGMTSHAAVVARGMGKSCIVGCSDVIVYE 474 + +++ + +P D ++ +G T GG TSH+A+++R + +VG +V Sbjct: 154 AEETVIIAEDLTPSDTAQLNKQFVKGFATDIGGRTSHSAIMSRSLEIPAVVGTKEVTE-- 211 Query: 475 DNTCEIDGKVYNLGDEISIDGGTGCVYQG----------RLKTQEATMSKEFETLLDWAD 524 K+ + GD + +DG G V + +E+ L+ Sbjct: 212 --------KIQH-GDMVIVDGIEGIVIVNPTEEEVKAYEEKRAAFEKQKQEWAKLVGEPS 262 Query: 525 ELSS---IDVYTNADTPADAQTAIEFGAKGIGLIRTEHMFFERDRIRAMREMILSRTPKQ 581 +++ N TP D + G +GIGL RTE ++ +RD++ P + Sbjct: 263 TTKDGAHVELAANIGTPKDVDGVLANGGEGIGLYRTEFLYMDRDQL-----------PTE 311 Query: 582 REAALTKILPIQRKDFEAIFTVMENRSVTVRYLDPPLHEFMPTTTQEIEELAASMNMGVA 641 E Q + ++ + M+ + V +R LD +G Sbjct: 312 EE---------QFEAYKEVVQRMDGKPVVIRTLD----------------------IGGD 340 Query: 642 EIKTVMRSLHEYNPMMGHRGCRLAITYPEIALMQTQALIEAAINVNQKGHRVNPEIMIPL 701 + + ++ E NP +G R RL + +I Q +AL+ A+ N ++M P+ Sbjct: 341 KELSYLQLPKELNPFLGFRAIRLCLEKQDIFRTQLRALLRAS-------TYGNLKVMFPM 393 Query: 702 VGDVNEFNFLAGRIRNLADALIDKAGVEVHYRI--GTMIELPRACLLADKIAEEAEFFSF 759 + + E ++ D L+ GV+V I G M+E+P + A+ A+E +FFS Sbjct: 394 IATLEELRQAKAIMQEEKDKLL-SEGVDVSDSIEVGIMVEIPSTAVAANLFAKEVDFFSI 452 Query: 760 GTNDLTQMTYGFSRDDAGTFLKDYYEKGIYQNDPFASLDQEGVGQLIQLAISKARGVKPD 819 GTNDL Q T R + E+ Y P+ V +I+ A + G Sbjct: 453 GTNDLIQYTMAADRMN---------ERVSYLYQPYHPAILRLVDMVIKAA--HSEGK--- 498 Query: 820 LKIGICGEHGGDPRSVKFFRDAGFNYVSCSPYRVPIAR 857 +G+CGE GD ++ G + S S + AR Sbjct: 499 -WVGMCGEMAGDEVAIPLLLGLGLDEFSMSATSILPAR 535
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 191 bits (488), Expect = 7e-61 Identities = 90/355 (25%), Positives = 154/355 (43%), Gaps = 48/355 (13%) Query: 1 MKVLVTGGAGYIGSHTCVELLNQGFEVVVVDNLSNSSVEALK--RVEAITGKTVTFYETN 58 MK LVTG AG+IG H LL G +VV +DNL++ +LK R+E + F++ + Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 59 VLDKPSLNAIFEKESVDAVIHFAALKAVGESVSKPLEYYQNNITGTLTLCEVMRDNDVKN 118 + D+ + +F + V AV S+ P Y +N+TG L + E R N +++ Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 119 IIFSSSATVYGAPKTVPINESFPLST-TSPYGSTKLMAEDM------LRDLNIADPSWNV 171 ++++SS++VYG + +P + + S Y +TK E M L L Sbjct: 121 LLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGL-------PA 173 Query: 172 VILRYFNPIGAHESGTIGEDPKGIPNNLVPYITQVAVGKLDHLSVFGDDYDTVDGSGVRD 231 LR+F G P G P ++ + A+ + + V+ G RD Sbjct: 174 TGLRFFTVYG----------PWGRP-DMALFKFTKAMLEGKSIDVYN------YGKMKRD 216 Query: 232 YIHVVDIALGHVAALK--------KMTETPE-------YRVYNLGTGQGYSVLEMVKAFS 276 + ++ DIA + ET YRVYN+G +++ ++A Sbjct: 217 FTYIDDIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALE 276 Query: 277 DVVGHEIPYQIKERRPGDIAECYADPQKAREELGWEAKRDLHKMCEDSWNWQKSN 331 D +G E + +PGD+ E AD + E +G+ + + ++ NW + Sbjct: 277 DALGIEAKKNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDF 331
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 51.5 bits (123), Expect = 1e-09 Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 2/132 (1%) Query: 80 LDPNLTDIGTLFEPNYERISEAHPDLIVISGRSAKHYEALSKIAPTIYMGRDSHPDGLIA 139 L ++ D+G EPN E ++E P +V S E L++IAP L Sbjct: 74 LPDSVIDVGLRTEPNLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAM 133 Query: 140 SMKANTEILHQLYPGRDLEGLMTDLESQVDAFKNKALKQTGT--LLFLMANGNEIKAFGP 197 + K+ TE+ L E + E + + K + +K+ LL + + + FGP Sbjct: 134 ARKSLTEMADLLNLQSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGP 193 Query: 198 ESRYDHVYRDFG 209 S + + ++G Sbjct: 194 NSLFQEILDEYG 205
>LIPOLPP20#LPP20 lipoprotein precursor signature. Length = 175 Score = 29.0 bits (64), Expect = 0.007 Identities = 10/39 (25%), Positives = 24/39 (61%) Query: 5 RRVLIVSLLITLILVGCTHQEEPTLSLNEEVLKEIRNSA 43 +++L +S++ +++VGC+H + +S + + KE A Sbjct: 6 KKILGMSVVAAMVIVGCSHAPKSGISKSNKAYKEATKGA 44
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 72.9 bits (179), Expect = 2e-15 Identities = 50/284 (17%), Positives = 98/284 (34%), Gaps = 52/284 (18%) Query: 92 DEIQSSEGYDSFQDLIGFDGSLSHIVQQIKSALLYPGRGLPIVLFGKRGSGKTYLSRMIH 151 + + L+G ++ I + + + L +++ G+ G+GK ++R +H Sbjct: 125 RPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTD---LTLMITGESGTGKELVARALH 181 Query: 152 KFCVEHNLIQTGQSVYHLKFIDPQCD------YERLLFGDE---------TQSGLLEQKD 196 + N F+ E LFG E +G EQ + Sbjct: 182 DYGKRRN----------GPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAE 231 Query: 197 IGVLYLEHADRMRPDIQYQVSNVIKDGYYTK--DRKVVKVHCRLVFGTSYNPEDAFD--- 251 G L+L+ M D Q ++ V++ G YT R ++ R+V T+ + + + + Sbjct: 232 GGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGL 291 Query: 252 -----YSLLQSLPIICKIPHFDQRGTQEK-----EHFILKFFKQEQQKLGLKIFISYKLL 301 Y L +P+ +P R E HF+ + K+ + L Sbjct: 292 FREDLYYRLNVVPLR--LPPLRDR--AEDIPDLVRHFVQQAEKEGLDVKRF----DQEAL 343 Query: 302 EALLQLKFDEDIHELKKCITRICATALESAQQGVMHCHLYHLPE 345 E + + ++ EL+ + R+ A E Sbjct: 344 ELMKAHPWPGNVRELENLVRRLTALY-PQDVITREIIENELRSE 386
>SECETRNLCASE#Bacterial translocase SecE signature. Length = 127 Score = 29.5 bits (66), Expect = 0.023 Identities = 23/107 (21%), Positives = 45/107 (42%), Gaps = 6/107 (5%) Query: 38 MNKLAEAKGRSFMMRLLDQFKDVTIIILLVAALISGIVGEHADA---ILIFAIVALNALI 94 M+ EA+G R L+ K V ++ LL+ A++ + L I+ A Sbjct: 1 MSANTEAQGSG---RGLEAMKWVVVVALLLVAIVGNYLYRDIMLPLRALAVVILIAAAGG 57 Query: 95 GMIQEDKAEKSLKALQDMSTPTAKVIRGGEEQTINSNDVVVGDLIVM 141 + K + ++ ++ T KVI ++T+++ +V VM Sbjct: 58 VALLTTKGKATVAFAREARTEVRKVIWPTRQETLHTTLIVAAVTAVM 104
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 34.0 bits (77), Expect = 0.006 Identities = 27/171 (15%), Positives = 62/171 (36%) Query: 620 KAKETIGKLENVSQTEKDDAKKAIDRAVTEAANELDKATTPSDIDSIYNQGKGVIDKVVI 679 + KE ++E + + + ++ + +A L A + +D I V + + Sbjct: 70 QVKEKRREIELQFRDAEKKLEASVQAELDKADAALGPAKNLAPLDVINRSLTIVGNALQQ 129 Query: 680 KTELADAKIDAINALQKKSEAVRDAINSMESLTDDEKNAANNEINQTLEQSIQRINQTQD 739 K + I +L K+ R A E + + L++ ++ + + Sbjct: 130 KNQKLLLNQKKITSLGAKNFLTRTAEEIGEQAVREGNINGPEAYMRFLDREMEGLTAAYN 189 Query: 740 VNVLPENLQIGMDELDALLVKYEQINSDKFNNQKENLKTELDKKAEDAKKE 790 V + E + ++ L I + N +E E +KAE+ ++ Sbjct: 190 VKLFTEAISSLQIRMNTLTAAKASIEAAAANKAREQAAAEAKRKAEEQARQ 240
>ACETATEKNASE#Acetate kinase family signature. Length = 400 Score = 148 bits (374), Expect = 3e-43 Identities = 74/338 (21%), Positives = 125/338 (36%), Gaps = 41/338 (12%) Query: 1 MYILAINPGASSTKFALFNDEQELM--------------RDDLKIPLEKVESYKTLEDQL 46 M IL IN G+SS K+ L + + EK++ K ++D Sbjct: 1 MKILVINCGSSSLKYQLIESKDGNVLAKGLAERIGINDSLLTHNANGEKIKIKKDMKDHK 60 Query: 47 EDRYVSIYDALVDHGFDPKKVEIAVGRGGILPPVEAGAIAVTDTLID--------YLLHK 98 + + + + K + G V G + LI + Sbjct: 61 DAIKLVLDALVNSDYGVIKDMSEIDAVGH--RVVHGGEYFTSSVLITDDVLKAITDCIEL 118 Query: 99 AEVIHPANL-GASIAQKFVDQAENCTAYIYDPISVDQMDPIARISGL------KGIERKS 151 A + +PAN+ G + + ++D M A + + K RK Sbjct: 119 APLHNPANIEGIKACTQIMPDVPMVA--VFDTAFHQTMPDYAYLYPIPYEYYTKYKIRKY 176 Query: 152 IGHMLNSRAVAIEHAKSLQTPYNKLNMIVVHAGSGITVTAHKQGRMVDL-VGDD--EGAF 208 H + + V+ A+ L P L +I H G+G ++ A K G+ +D +G EG Sbjct: 177 GFHGTSHKYVSQRAAEILNKPIESLKIITCHLGNGSSIAAVKNGKSIDTSMGFTPLEGLA 236 Query: 209 SPERSGGLPLRPFMNLCY--NNDKEAVTKLTRHQGGLISYFE-TNDVRSV-EAMIEEGHD 264 RSG + L N E V + + G+ ++D R + +A + G Sbjct: 237 MGTRSGSIDPSIISYLMEKENISAEEVVNILNKKSGVYGISGISSDFRDLEDAAFKNGDK 296 Query: 265 EAALVLEAMAYQIAKSIGTLSTVLEGKVDTIVISGGFA 302 A L L AY++ K+IG+ + + G VD IV + G Sbjct: 297 RAQLALNVFAYRVKKTIGSYAAAM-GGVDVIVFTAGIG 333
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 40.3 bits (94), Expect = 8e-07 Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 2/74 (2%) Query: 76 NRHAELAIVIGDKDYWGKGYGKLIMAQLIEWGFEGLNLNRLYLHVFDFNKRAIALYEKMG 135 N +A + + KDY KG G ++ + IEW E + L L D N A Y K Sbjct: 87 NGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKE-NHFCGLMLETQDINISACHFYAKHH 145 Query: 136 FVEEGRMREMLYRN 149 F+ G + MLY N Sbjct: 146 FI-IGAVDTMLYSN 158
>PERTACTIN#Pertactin signature. Length = 922 Score = 32.0 bits (72), Expect = 0.004 Identities = 35/123 (28%), Positives = 53/123 (43%), Gaps = 9/123 (7%) Query: 19 LLFIVFVRGGARIKMSHDTLRKPA-TSESDVIVFLVTSDDTLDTIAER-LEGQGIVRSKK 76 L V V+ G ++ H TL + T + D I V + +IA+ L+G G VR ++ Sbjct: 109 FLGTVTVKAG-KLVADHATLANVSDTRDDDGIALYVAGEQAQASIADSTLQGAGGVRVER 167 Query: 77 FFNKTIQRSTTQNIKPGNYFLDRSSTYEELATQLTNPENKVGREVDITFLPNDWAKDFAF 136 N T+QRST I G + T + L + P V + +T +P A F Sbjct: 168 GANVTVQRST---IVDGGLHI---GTLQPLQPEDLPPSRVVLGDTSVTAVPASGAPAAVF 221 Query: 137 KIG 139 G Sbjct: 222 VFG 224
>PF01206#SirA family protein Length = 76 Score = 43.2 bits (102), Expect = 1e-09 Identities = 11/69 (15%), Positives = 26/69 (37%) Query: 2 KRIDCLGEICPYPMLLLQKEYDALCSGESVLLITDHHCTLSAVGVYCDAQGFRYSPDEVI 61 + +D G CP P+L +K + +GE + ++ ++ + G + Sbjct: 6 QSLDATGLNCPLPILKAKKTLATMNAGEVLYVMATDPGSVKDFESFSKQTGHELLEQKEE 65 Query: 62 PGVWEITIT 70 G + + Sbjct: 66 DGTYHFRLK 74
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 42.9 bits (101), Expect = 5e-08 Identities = 29/136 (21%), Positives = 54/136 (39%), Gaps = 19/136 (13%) Query: 3 KVITYGTFDLLHQGHINILKRAKALGDYLIVGISTDEFNALKKKDSFHSFETR-KYILEA 61 I G+FD + GH++I++R L D + V + + K S + R + I +A Sbjct: 2 NAIYPGSFDPITFGHLDIIERGCRLFDQVYVAVLRN-----PNKQPMFSVQERLEQIAKA 56 Query: 62 IKYVDEVIPEETWDQKVTDVLNNEVDVFVMG----DDWEGKFD------DLKEYCEVVYL 111 I ++ + V + + G D+E + L E V+L Sbjct: 57 IAHLPNAQVDSFEGLTVNYARQRQAGAILRGLRVLSDFELELQMANTNKTLASDLETVFL 116 Query: 112 PRTP---HISTTLIKE 124 + +S++L+KE Sbjct: 117 TTSTEYSFLSSSLVKE 132
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 90.2 bits (224), Expect = 8e-22 Identities = 57/332 (17%), Positives = 124/332 (37%), Gaps = 60/332 (18%) Query: 287 RVLITGAGGSIGSELVRQVVKYSPMSLTLVDINENGLYDIQQELRIMEREGVIPKIKVSA 346 + L+TGA G IG + +++++ + + +D N N YD+ + R ++ + Sbjct: 2 KYLVTGAAGFIGFHVSKRLLE-AGHQVVGID-NLNDYYDVSLK---QARLELLAQPGFQF 56 Query: 347 IITSVRDQSSLEKVFESAKPTIVFHAAAHKHVPLMEDAPEEAIKNNIFGTFNIIQTSIKY 406 + D+ + +F S VF + V + P +N+ G NI++ Sbjct: 57 HKIDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHN 116 Query: 407 KVEKVINIST---------------DKAVNPTNIMGATKRFNEMMLQAFDKCSSTKFVAV 451 K++ ++ S+ D +P ++ ATK+ NE+M + + Sbjct: 117 KIQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGL 176 Query: 452 RFGNVLGSNGS---VVPLFRKQIEQGGPVTV-THPEIIRYFMTIPEAVSLVLQA------ 501 RF V G G + F K + +G + V + ++ R F I + +++ Sbjct: 177 RFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPH 236 Query: 502 ------------ATYADGGEIFVLDMGEPVKILSLAEKVIELSGYVPYKDIEIKFTGLRP 549 A ++ + PV+++ + + + G + + L+P Sbjct: 237 ADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALG----IEAKKNMLPLQP 292 Query: 550 GE---------KLYEEL-----LMAEEGLQKT 567 G+ LYE + ++G++ Sbjct: 293 GDVLETSADTKALYEVIGFTPETTVKDGVKNF 324
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 63.1 bits (153), Expect = 1e-14 Identities = 21/52 (40%), Positives = 30/52 (57%) Query: 5 RKHILQTAHIYFMKYGYQETSTRDIARDLGITQPAIYHYFKSKEILYFEVLN 56 R+HIL A F + G TS +IA+ G+T+ AIY +FK K L+ E+ Sbjct: 13 RQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWE 64
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 24.4 bits (53), Expect = 0.032 Identities = 8/33 (24%), Positives = 18/33 (54%), Gaps = 1/33 (3%) Query: 3 EQGYGVGFGLIFGTILAVFINLFFNIPLIYAMV 35 VG G++ G + A + +FF +P+ + ++ Sbjct: 997 GAQNAVGIGVMGGMVSATLLAIFF-VPVFFVVI 1028
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 82.6 bits (204), Expect = 2e-20 Identities = 39/133 (29%), Positives = 65/133 (48%), Gaps = 6/133 (4%) Query: 3 KILIVDDDKEIRDLMKRYLEIDGYEVVVASDGHDAMRAL-DESIKLVILDVMMPEITGFE 61 IL+ DDD IR ++ + L GY+V + S+ R + LV+ DV+MP+ F+ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 VSEAIRKQY-NVPILFVSAKATEQDKFVGFSVGGDDYLSKPFSFSELSLRVKSLLRRYIQ 120 + I+K ++P+L +SA+ T G DYL KPF +EL ++ R + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELI----GIIGRALA 120 Query: 121 YDRATENALEQNK 133 + + LE + Sbjct: 121 EPKRRPSKLEDDS 133
>PF06580#Sensor histidine kinase Length = 349 Score = 29.1 bits (65), Expect = 0.032 Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 4/86 (4%) Query: 354 LFENIISNVLKYAEPKSTIKIEITIENSSCTLEIE-NAIRVDQVTEEASGFGLLSCRKIV 412 L EN I + + I ++ T +N + TLE+E + T+E++G GL + R+ + Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKESTGTGLQNVRERL 322 Query: 413 DTHKG---HFSTSKDENVFTTKVELP 435 G S+ + V +P Sbjct: 323 QMLYGTEAQIKLSEKQGKVNAMVLIP 348
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 25.2 bits (55), Expect = 0.045 Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 1/29 (3%) Query: 1 MSTFF-KLNWLVFVVTIAILFAGYYAEKK 28 M+ FF + +V+ I ++ AG A + Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQ 29
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 31.1 bits (70), Expect = 0.014 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 1/59 (1%) Query: 335 YELIKTFPDGAFQLAQKQTL-QMADLVVESFETTHDYLTTRDDEDFDVIGQLEEMVNEL 392 + ++T A A +Q L ++ +V F+TT YL +D + IG + +N Sbjct: 113 FTSLQTLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNY 171
>MALTOSEBP#Maltose binding protein signature. Length = 396 Score = 29.7 bits (66), Expect = 0.025 Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 12/110 (10%) Query: 55 INKISEEEIGVKVKFNYIGWGDYEQKMSVMVTAGDEFDLAF--ANNYTINAQKGAYADLT 112 + K E++ G+KV + E+K + GD D+ F + + AQ G A++T Sbjct: 49 VGKKFEKDTGIKVTVEHPD--KLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEIT 106 Query: 113 DLVKEHAKEFFDSVDPIYYDGNVIDGKLYGFPINGNVFAQQMLTFNSDYL 162 K F D + P +D +GKL +PI + L +N D L Sbjct: 107 P-----DKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALS---LIYNKDLL 148
>PF06917#Periplasmic pectate lyase Length = 555 Score = 28.3 bits (63), Expect = 0.024 Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 1/36 (2%) Query: 39 AFLVLMDLY-HEHGWEYRGYAWRNLVLLFKTHFKRG 73 L L++L H AW+ LFK H+ RG Sbjct: 449 LLLALVELAEHCQCPTLFTLAWQIGDDLFKRHYHRG 484
>PF06580#Sensor histidine kinase Length = 349 Score = 185 bits (470), Expect = 2e-55 Identities = 49/216 (22%), Positives = 94/216 (43%), Gaps = 20/216 (9%) Query: 359 EIYQLEIRQQDINLRALQSQINPHFLYNTLEFIRMYAVSEGVDELADVVYTFASLLRNNI 418 + +++ Q+ L AL++QINPHF++N L IR + E + +++ + + L+R ++ Sbjct: 150 DQWKMASMAQEAQLMALKAQINPHFMFNALNNIRA-LILEDPTKAREMLTSLSELMRYSL 208 Query: 419 --SLEKTTTLAKELEFCEKYVYLHQMRYPNRVAYKFDIEPGLEQIIMPKFTMQPLIENYF 476 S + +LA EL + Y+ L +++ +R+ ++ I P + + +P +Q L+EN Sbjct: 209 RYSNARQVSLADELTVVDSYLQLASIQFEDRLQFENQINPAIMDVQVPPMLVQTLVENGI 268 Query: 477 IHGIDFGRVDNAIKVTAYRKKDQIVLEVSDNGKGMDNKRLAHIQKLIDESVFNINDHNSV 536 HGI I + + + LEV + G N + Sbjct: 269 KHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALK---------------NTKESTGT 313 Query: 537 GLLNVHERLKTYFSNSHYSMTISINNLKGFTVTMRF 572 GL NV ERL+ + + +S + Sbjct: 314 GLQNVRERLQMLYGTE-AQIKLS-EKQGKVNAMVLI 347
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 84.5 bits (209), Expect = 2e-19 Identities = 27/130 (20%), Positives = 55/130 (42%), Gaps = 3/130 (2%) Query: 4 VLLVDDEYMILSGLQKIINWDDLGLQCVGTASNGQEALEFVRKHPVDIVVTDVSMPEQSG 63 +L+ DD+ I + L + ++ G SN ++ D+VVTDV MP+++ Sbjct: 6 ILVADDDAAIRTVLNQALS--RAGYDVR-ITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 64 IEFVQAAQEEDINFNFVVLSGYQEFEYVKEGIRLGAENFLLKPISKEELNETLRKTVSKL 123 + + ++ + +V+S F + GA ++L KP EL + + +++ Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122 Query: 124 DSEKRHAHTD 133 D Sbjct: 123 KRRPSKLEDD 132
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 65.7 bits (160), Expect = 8e-14 Identities = 67/339 (19%), Positives = 130/339 (38%), Gaps = 17/339 (5%) Query: 2 RKNIVNSEPTFLLIIILLGFPQLHEALFAPSLQHVMQTFSVSVNSAQNTISIYFLAFACG 61 + N+ +++ L I+ F L+E + SL + F+ S + + L F+ G Sbjct: 7 QSNLRHNQILIWLCILSF-FSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIG 65 Query: 62 VLFWGTYSDSHGRRPAMMYGLSIYLIGASLIFIAPN-FTLFLMGRAILAFGIATTSVTTQ 120 +G SD G + +++G+ I G+ + F+ + F+L +M R I G A Sbjct: 66 TAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVM 125 Query: 121 TILREAFSPDVRNQLFSKVSVGLAFVPGLGPILGGFIVEHYTLYSLLALLVVLGLSILVL 180 ++ + R + F + +A G+GP +GG I + LL + ++ +++ L Sbjct: 126 VVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFL 185 Query: 181 AYNKLPETRIQDDLSKNN-----VFKVFTRLVRTPTVWIYG--FFIAVMNAVMSCYYAEA 233 E RI+ V VF L T + ++ + V Sbjct: 186 MKLLKKEVRIKGHFDIKGIILMSVGIVFFMLFTTSYSISFLIVSVLSFLIFVKHIRKVTD 245 Query: 234 PIILQAFFNRSLTEIGSYSVFFAISTILG-ALLTQRLLKHYKPERIMLIGNIVFGLGSLT 292 P + IG T+ G + ++K IG+++ G+++ Sbjct: 246 PFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMS 305 Query: 293 MVFASHNPSLVFYIGGMIVVRFGTAISLSNAISLALNGF 331 ++ YIGG++V R G L+ ++ F Sbjct: 306 VIIFG-------YIGGILVDRRGPLYVLNIGVTFLSVSF 337
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 43.5 bits (102), Expect = 2e-06 Identities = 58/384 (15%), Positives = 129/384 (33%), Gaps = 8/384 (2%) Query: 112 EEYKRIKGLNEELAENIKNQELQFSTELNQYKTVSGELQEELDKISSHYQSLQEQLERAH 171 + ++ + + + +L + E ++ ++ + L++ LE A Sbjct: 74 SDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAM 133 Query: 172 GEVSVLTQQVKENEEENIKVEQYLDQLESSLQEKNRALEESVRLLKEKEIELETSNAEVH 231 + + ++K E E + LE +L+ +K E E A Sbjct: 134 NFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQA 193 Query: 232 ELREQMLVMETKLAEKDSEIARTMKILEEYQAQEENFMALIDQKEDMIIERNNALQEAAR 291 EL + + ++I A++ + ++ + + ++ Sbjct: 194 ELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEA 253 Query: 292 MVESLESQREAFESRLMDQQGTIDEQQESIEHTQYVLDEKEEEIKTLELKIQQLTDAVEA 351 +LE+++ E L I+ + E E LE + Q L ++ Sbjct: 254 EKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQS 313 Query: 352 MNSQDDL---AVETLTNEVEFLTKKLDLMTSEKDETVMLLQEKIQNLTQQLEQVQLQPNI 408 + D A + L E + L ++ + + + L + Q + Q Sbjct: 314 LRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQ 373 Query: 409 MQRVEDIRTQYDQLLQKKDIIINRLEAEVNSAPSFTFDQERALLKQEIAQLQEELKQEMI 468 + E R + L ++E + A S + A L++ +L+E K Sbjct: 374 NKISEASRQSLRRDLDASREAKKQVEKALEEANS-----KLAALEKLNKELEESKKLTEK 428 Query: 469 DKYQVRKGLNDEVRRLKERLDTQT 492 +K +++ L E + LKE+L Q Sbjct: 429 EKAELQAKLEAEAKALKEKLAKQA 452 Score = 42.7 bits (100), Expect = 3e-06 Identities = 34/274 (12%), Positives = 81/274 (29%), Gaps = 17/274 (6%) Query: 73 GNLEFQIKEMLLEKASLSQENALLKSQFTDAESKMIEIEEEYKRIKGLNEELAENIKNQE 132 L+ E+ E ++ ++ ++ SK+ E+E ++ E Sbjct: 81 KALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADS 140 Query: 133 LQ---FSTELNQYKTVSGELQEELDKISSHYQSLQEQLERAHGEVSVLTQQVKENEEENI 189 + E +L++ L+ + + +++ E + L + E E+ Sbjct: 141 AKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALE 200 Query: 190 KVEQYLDQLESSLQEKNRALEESVRLLKEKEIELETSNAEVHELREQMLVMETKLAEKDS 249 + + ++ + E LE + ++ +E + A ++ Sbjct: 201 GAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEA 260 Query: 250 EIARTMKILEEYQAQEENFMALIDQKEDMIIERNNALQEAARMVESLESQREAFESRLMD 309 A K LE A I E + + L + R++ L Sbjct: 261 RQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDA 320 Query: 310 QQGTIDEQQESIEHTQYVLDEKEEEIKTLELKIQ 343 + + E E + LE + + Sbjct: 321 SREAKKQL--------------EAEHQKLEEQNK 340 Score = 33.5 bits (76), Expect = 0.003 Identities = 33/173 (19%), Positives = 64/173 (36%), Gaps = 3/173 (1%) Query: 61 VEQIEQNVSQMQGNLEFQIKEMLLEKASLSQENALLKSQFTDAESKMIEIEEEYKRIKGL 120 S LE + + KA L + + T +K+ +E E ++ Sbjct: 202 AMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEAR 261 Query: 121 NEELAENIKNQELQFSTELNQYKTVSGE---LQEELDKISSHYQSLQEQLERAHGEVSVL 177 EL + ++ + + + KT+ E L+ E + Q L + ++ Sbjct: 262 QAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDAS 321 Query: 178 TQQVKENEEENIKVEQYLDQLESSLQEKNRALEESVRLLKEKEIELETSNAEV 230 + K+ E E+ K+E+ E+S Q R L+ S K+ E E + + Sbjct: 322 REAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQN 374
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 63.1 bits (153), Expect = 1e-14 Identities = 30/155 (19%), Positives = 61/155 (39%), Gaps = 3/155 (1%) Query: 1 MVSKLEKNKLLKENKLYNAAYDLFTSHGINETSISDIAKHAGVGKGTFYLYFKDKYDILD 60 M K ++ + + A LF+ G++ TS+ +IAK AGV +G Y +FKDK D+ Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60 Query: 61 RIIFKKSSDVLVYAVN---ETHLNVFEHFEDEVIFFINVILDFLEQDRLLLKLIHKNLSW 117 I S++ + + + + +I + + + L+ + HK Sbjct: 61 EIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFV 120 Query: 118 GVLKKAKEDYEEINLIYHMFTKGLKDLGISEAEID 152 G + ++ + L + + I + Sbjct: 121 GEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLP 155
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 50.6 bits (121), Expect = 2e-08 Identities = 32/176 (18%), Positives = 72/176 (40%), Gaps = 6/176 (3%) Query: 186 AVLLATLVLAMTLESTVIPFIILLSIGYAIAYNFGTNVIFGQISYITKSLAA-VLQLGVT 244 A++L LV+ + L++ I +++ + F FG S T ++ VL +G+ Sbjct: 347 AIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFG-YSINTLTMFGMVLAIGLL 405 Query: 245 LDYSIFLLHRYEEELRKN-SNKEQAMGSAIASTASSIVGSSLTTVAGFLAIGAMNLTIG- 302 +D +I ++ E + ++ ++A +++ ++VG ++ A F+ + + G Sbjct: 406 VDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGA 465 Query: 303 --KDIGFVMAKGVVLGVLSVLTVLPSLILIFDGPIHKWRHRTILPEFNHLSKLVTR 356 + + + L VL L + P+L P+ H F + Sbjct: 466 IYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDH 521 Score = 47.5 bits (113), Expect = 2e-07 Identities = 36/149 (24%), Positives = 69/149 (46%), Gaps = 8/149 (5%) Query: 529 ALSFAAVFIIIALVFMSVSIPVLLIAAIMLAIFINMSVPFFMGT--SIPFIAGIVIGSIQ 586 A+SF VF+ +A ++ S SIPV ++ + L I + + F+ G++ Sbjct: 877 AISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLL---TT 933 Query: 587 LGATVDYAILLTTRFKEEC-GNGLEKHEAMEIAVKESAKSISTSGLAFFGSTVGVAIISE 645 +G + AIL+ K+ G EA +AV+ + I + LAF + +AI + Sbjct: 934 IGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNG 993 Query: 646 M--ELVSSLSGMIARGAIISTLVILFILP 672 +++ + G + +TL+ +F +P Sbjct: 994 AGSGAQNAVGIGVMGGMVSATLLAIFFVP 1022 Score = 46.4 bits (110), Expect = 4e-07 Identities = 32/166 (19%), Positives = 70/166 (42%), Gaps = 6/166 (3%) Query: 172 KELADAQTPIYVGLAVLLATLVLAMTLESTVIPFIILLSIGYAIAYNFGTNVIFGQISYI 231 + L+ Q P V ++ ++ L LA ES IP ++L + I +F Q + + Sbjct: 865 ERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDV 924 Query: 232 TKSLAAVLQLGVTLDYSIFLLHRYEEELRKNS-NKEQAMGSAIASTASSIVGSSLTTVAG 290 + + +G++ +I ++ ++ + K +A A+ I+ +SL + G Sbjct: 925 YFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILG 984 Query: 291 FLAIGAMNLTIG----KDIGFVMAKGVVLGVLSVLTVLPSLILIFD 332 L + A++ G +G + G+V L + +P ++ Sbjct: 985 VLPL-AISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFVVIR 1029
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 33.5 bits (76), Expect = 0.003 Identities = 47/291 (16%), Positives = 82/291 (28%), Gaps = 2/291 (0%) Query: 328 ADSTSLFTEKAAQLGNGYLALSEGVMQYASKATQLSDGFIKASEALKPVRGSVTKLKTGM 387 D+ E+A + L + L D + +E L + + K + Sbjct: 49 TDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSL 108 Query: 388 TQIDSGTQKLMTGSHQVVAGVTGVQGANTTGLNQINQTTQAIASLKEQITVLEKAIALIP 447 ++ S Q+L + + G +T +I A+L + LEKA+ Sbjct: 109 SEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAM 168 Query: 448 EDKDRTEIQQEYETLVKTVNALEQSNEAVNTIYGHVDTQLPTLVEGSEAVKQGLETVNTN 507 + +TL ALE + + ++ + Sbjct: 169 NFST--ADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAAR 226 Query: 508 QKSVLAGLGQLDLGLEQFETVSAQLNENAQKLNAGALVLDTKSKEASRGSQLLLDGSSKL 567 + + L L L A L+ + A S L Sbjct: 227 KADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTL 286 Query: 568 SSGALELATGIQKLNDGSNVVKDGLDALAQGTNQVYHAGSQLEAGASKLAE 618 + L L S V+ +L + + A QLEA KL E Sbjct: 287 EAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEE 337 Score = 30.4 bits (68), Expect = 0.025 Identities = 41/295 (13%), Positives = 90/295 (30%), Gaps = 9/295 (3%) Query: 261 IETLKDAANQLANGTQQLSDGSNQLNSGITDYVSAVGKVNDGSHELSSGSGVFFDGIYRS 320 TLK + L+ + L D +++L +++ K+ LS + + R Sbjct: 66 NNTLKLKNSDLSFNNKALKDHNDELTEELSNAKE---KLRKNDKSLSEKASKIQELEARK 122 Query: 321 SVGAQSLADSTSLFTEKAAQLGNGYLALSEGVMQYASKATQLSDGFIKASEALKPVRGSV 380 + ++L + + T +A++ L A++ L A + Sbjct: 123 ADLEKALEGAMNFSTADSAKIKT----LEAEKAALAARKADLEKALEGAMNFSTADSAKI 178 Query: 381 TKLKTGMTQIDSGTQKLMTGSHQVVAGVTGVQGANTTGLNQINQTTQAIASLKEQITVLE 440 L+ +++ +L + T T + A L++ + Sbjct: 179 KTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAM 238 Query: 441 KAIALIPEDKDRTEIQQEYETLVKTVNALEQSNEAVNTIYGHVDTQLPTLVEGSEAVKQG 500 + ++ E L LE++ E ++ TL A++ Sbjct: 239 NFSTA--DSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAE 296 Query: 501 LETVNTNQKSVLAGLGQLDLGLEQFETVSAQLNENAQKLNAGALVLDTKSKEASR 555 + + + A L L+ QL QKL + + + R Sbjct: 297 KADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRR 351
>PF06580#Sensor histidine kinase Length = 349 Score = 34.8 bits (80), Expect = 6e-04 Identities = 25/143 (17%), Positives = 46/143 (32%), Gaps = 28/143 (19%) Query: 317 YFMLQQIRATTHLFLALDLHFEIHCDPNLMVVADEIKMGQVLY-NYINNATKYVGNDNVI 375 Y L I+ L FE +P +M V + Q L N I + + I Sbjct: 228 YLQLASIQ------FEDRLQFENQINPAIMDVQVPPMLVQTLVENGIKHGIAQLPQGGKI 281 Query: 376 VIKADVEGDLVVVSVTDHGIGISPDIIDHIWDRYYKIDKNYQRSGSSSGLGLSIVKA-IC 434 ++K + V + V + G + + S+G GL V+ + Sbjct: 282 LLKGTKDNGTVTLEVENTG------------------SLALKNTKESTGTGLQNVRERLQ 323 Query: 435 DASGSKY--WVESELGVGTSFFY 455 G++ + + G + Sbjct: 324 MLYGTEAQIKLSEKQGKVNAMVL 346
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 80.6 bits (199), Expect = 9e-20 Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 2/123 (1%) Query: 3 RFLIVDDEEKIREVAKEYAKATGLLCDEASDGAEAIEMVKSNDYDVVVLDIMMPNLDGFT 62 L+ DD+ IR V + G S+ A + + D D+VV D++MP+ + F Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 63 ACREIKKI-KDVPIIMLSARQEEFDKLLGFELGIDDYVTKPFSPKELMARI-KAVSERAK 120 IKK D+P++++SA+ + E G DY+ KPF EL+ I +A++E + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 121 GMK 123 Sbjct: 125 RPS 127
>ACETATEKNASE#Acetate kinase family signature. Length = 400 Score = 492 bits (1267), Expect = e-176 Identities = 198/397 (49%), Positives = 277/397 (69%), Gaps = 7/397 (1%) Query: 3 KVLAVNAGSSSLKFQLLEMPEAEVLTSGIVERIGLNDGIITFKYSDQKDTNTLDIPDHHV 62 K+L +N GSSSLK+QL+E + VL G+ ERIG+ND ++T + +K D+ DH Sbjct: 2 KILVINCGSSSLKYQLIESKDGNVLAKGLAERIGINDSLLTHNANGEKIKIKKDMKDHKD 61 Query: 63 AVDLVLKGLVEKN--IVSDLSEIVAAGHRVVHGGEYFQGSAVCDEVSVAQVEELADLAPL 120 A+ LVL LV + ++ D+SEI A GHRVVHGGEYF S + + + + + +LAPL Sbjct: 62 AIKLVLDALVNSDYGVIKDMSEIDAVGHRVVHGGEYFTSSVLITDDVLKAITDCIELAPL 121 Query: 121 HNPANLIGYRAFKEALPNATHIFAFDTAFHQTMPEEVFMYALPYEYYSDLAVRRYGAHGI 180 HNPAN+ G +A + +P+ + FDTAFHQTMP+ ++Y +PYEYY+ +R+YG HG Sbjct: 122 HNPANIEGIKACTQIMPDVPMVAVFDTAFHQTMPDYAYLYPIPYEYYTKYKIRKYGFHGT 181 Query: 181 SHEYVAQRTAELMGKKVEDVNLITLHLGNGASISAVKGGKCVNTSMGFTPLAGLMMGTRT 240 SH+YV+QR AE++ K +E + +IT HLGNG+SI+AVK GK ++TSMGFTPL GL MGTR+ Sbjct: 182 SHKYVSQRAAEILNKPIESLKIITCHLGNGSSIAAVKNGKSIDTSMGFTPLEGLAMGTRS 241 Query: 241 GDLDPAIVTYLMRKLDITAVEVLDIFNKKSGMAGISGISSDARDIENG-IDEGNERAILT 299 G +DP+I++YLM K +I+A EV++I NKKSG+ GISGISSD RD+E+ G++RA L Sbjct: 242 GSIDPSIISYLMEKENISAEEVVNILNKKSGVYGISGISSDFRDLEDAAFKNGDKRAQLA 301 Query: 300 RKMYAQRVLEYVGAYALQLGHVDGLVFTAGLGENDTGTREAILDVLQP-GLKLDYDRELN 358 ++A RV + +G+YA +G VD +VFTAG+GEN RE ILD L+ G KLD ++ Sbjct: 302 LNVFAYRVKKTIGSYAAAMGGVDVIVFTAGIGENGPEIREFILDGLEFLGFKLDKEK--- 358 Query: 359 NKTRGKEVKLSTDASSMDIWVCPTNEELVIATDAYRI 395 NK RG+E +ST S +++ V PTNEE +IA D +I Sbjct: 359 NKVRGEEAIISTADSKVNVMVVPTNEEYMIAKDTEKI 395
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 36.6 bits (84), Expect = 5e-04 Identities = 32/229 (13%), Positives = 83/229 (36%), Gaps = 12/229 (5%) Query: 169 SKYKKRKIESINKLERTKENVDRMQDIVDEITRQVSSLKRAAKKAEQYKEKKALLESIEV 228 + + R+ E LE + + + ++L E+ E + + Sbjct: 186 AALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADS 245 Query: 229 SVICREIKELEELIDSNKNETYRLESEIASLETNIGVYDHELQEKRQEIFKMDQDI--VK 286 +IK LE + + LE + +++ E ++ + ++ Sbjct: 246 ----AKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLE 301 Query: 287 GQEKIMQFVREIGI--LETRKVEID--ERRKYTLEVGDKQAKA--QELFAAMNDAKLEYD 340 Q +++ R+ L+ + E LE +K ++A Q L ++ ++ Sbjct: 302 HQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKK 361 Query: 341 ERKDRHKKLNAEVELLTESTYEKNRELADKQQSLNTLLSSLNQLKNRLE 389 + + H+KL + ++ S R+L +++ + +L + ++L Sbjct: 362 QLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQVEKALEEANSKLA 410
>TYPE3OMGPROT#Type III secretion system outer membrane G protein family signature. Length = 607 Score = 33.7 bits (77), Expect = 8e-04 Identities = 10/17 (58%), Positives = 12/17 (70%) Query: 131 IRKVPFLSEIPVIGKLF 147 + KVP L +IP IG LF Sbjct: 472 LSKVPLLGDIPYIGALF 488
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.4 bits (68), Expect = 0.019 Identities = 10/23 (43%), Positives = 14/23 (60%) Query: 32 ILALLGENGAGKSTLMSVLFGMY 54 + L G G GKSTL++ L G+ Sbjct: 598 SVVLEGTGGIGKSTLINTLVGLD 620
>LIPPROTEIN48#Mycoplasma P48 major surface lipoprotein signature. Length = 428 Score = 71.2 bits (174), Expect = 9e-16 Identities = 64/288 (22%), Positives = 112/288 (38%), Gaps = 37/288 (12%) Query: 28 TSEIALITDIGTIDDHSFNQESWEGIIDFCKEHNISYKYYRPENKDDIAFYNEIQKAIEE 87 + LITD G IDD SFNQ ++E + K+ I P + + A+ + + Sbjct: 61 KLKPVLITDEGKIDDKSFNQSAFEALKAINKQTGIEINNVEPSSNFESAYNSAL-----S 115 Query: 88 GGAKVVVLPGFYFEATAAKVQNDF------PKTKFILIDALPKPNESGTIDIRDNLVPVL 141 G K+ VL GF + + + + + K I ID + + Sbjct: 116 AGHKIWVLNGFKHQQSIKQYIDAHREELERNQIKIIGIDFDIETEYK-------WFYSLQ 168 Query: 142 FKEEQAAYLAGYVTAL------EGYTKVGFVGGAKIPAVERYGMGFVRGL----QEGAKS 191 F +++A+ GY A E V GG P V + GF +G+ Q+ S Sbjct: 169 FNIKESAFTTGYAIASWLSEQDESKRVVASFGGGAFPGVTTFNEGFAKGILYYNQKHKSS 228 Query: 192 M---NKTIDLKYKYSGAFEPSTEVQML---GSSWYNEGTEIIFGSAGGAGQSIIKAAEDA 245 + L ++ + +T + + + +I AG A ++ A + Sbjct: 229 KIYHTSPVKLDSGFTAGEKMNTVINNVLSSTPADVKYNPHVILSVAGPATFETVRLA-NK 287 Query: 246 YKRYIGVDVDQSYLSSK--VVYSATKGIRKTVKNLLVENSEDKFPGGE 291 + IGVD DQ + K ++ S K I++ V L++ +K G + Sbjct: 288 GQYVIGVDSDQGMIQDKDRILTSVLKHIKQAVYETLLDLILEKEEGYK 335
>LIPPROTEIN48#Mycoplasma P48 major surface lipoprotein signature. Length = 428 Score = 74.3 bits (182), Expect = 1e-16 Identities = 75/308 (24%), Positives = 121/308 (39%), Gaps = 39/308 (12%) Query: 36 LITDVGTIDDRSFNQGSYEGVKQYGDENKVTYTYYRPVAKDDEAYFNEIEKAITEGGAKV 95 LITD G IDD+SFNQ ++E +K + + P + + AY + + G K+ Sbjct: 66 LITDEGKIDDKSFNQSAFEALKAINKQTGIEINNVEPSSNFESAYNSAL-----SAGHKI 120 Query: 96 VVMPGFLFANA------AFRAQQEFPDVNFIFVDGAPSETPQSEPVIGPNMYSVVWEEQQ 149 V+ GF + A R + E + I +D + YS+ + ++ Sbjct: 121 WVLNGFKHQQSIKQYIDAHREELERNQIKIIGIDFDIETEYKW-------FYSLQFNIKE 173 Query: 150 AGFLAGYAAVKDGYTK------LGYIGGMKVPAVEKFGLGYVYGA---NHAAEELGITVD 200 + F GYA + + GG P V F G+ G N + I Sbjct: 174 SAFTTGYAIASWLSEQDESKRVVASFGGGAFPGVTTFNEGFAKGILYYNQKHKSSKIYHT 233 Query: 201 MMYKYSGTFEASQEVQMLASGWYAGGTEVIFVSAGG----AGPSVFKAAE--DKEAKVIG 254 K F A +++ + + + + + AGP+ F+ +K VIG Sbjct: 234 SPVKLDSGFTAGEKMNTVINNVLSSTPADVKYNPHVILSVAGPATFETVRLANKGQYVIG 293 Query: 255 VDVDQ--AGESETIITSALKELQLAVYEGLKAHYDGKFPGGTQHAYNINDDGVGLPKNFD 312 VD DQ + + I+TS LK ++ AVYE L K G Y + D K + Sbjct: 294 VDSDQGMIQDKDRILTSVLKHIKQAVYETLLDLILEKEEG--YKPYVVKDKKA--DKKWS 349 Query: 313 RFKTFKQE 320 F T K++ Sbjct: 350 HFGTQKEK 357
>BACINVASINB#Salmonella/Shigella invasin protein B signature. Length = 593 Score = 28.2 bits (62), Expect = 0.029 Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 9/116 (7%) Query: 72 LLFIVFMIPVTRFLIGTSLGTYAASVPM----SFVAAALYARFVEQALLEVPQGIIDSAL 127 LL IV ++ F G SL A + + V AA F++QAL + + ++ + Sbjct: 324 LLTIVSVVAAV-FTGGASLALAAVGLAVMVADEIVKAATGVSFIQQALNPIMEHVLKPLM 382 Query: 128 SLGATPFQLVFKFLFVEARS----GLVLGLTSSIISYVNYSTVMGVVGGGGIGDFA 179 L + L V+ ++ G ++G + I+ V V+ VVG G Sbjct: 383 ELIGKAITKALEGLGVDKKTAEMAGSIVGAIVAAIAMVAVIVVVAVVGKGAAAKLG 438
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 39.7 bits (92), Expect = 2e-05 Identities = 37/211 (17%), Positives = 83/211 (39%), Gaps = 18/211 (8%) Query: 59 EYINQKISDSQTRLKNIEKQKDDISTSIENQQETIRVYQEEIHALSTTARELKASITAIN 118 + + + + + R +EK + I+ + E AL +L+ +N Sbjct: 249 KTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLN 308 Query: 119 EDIKQTQINIDVYQKEIDVLNEKVKKNIATSQSQLYVDPLVEFVFAAVDFVSLIRRVEGM 178 + + + ++D ++ L + +K Q+++ + SL R ++ Sbjct: 309 ANRQSLRRDLDASREAKKQLEAEHQK--LEEQNKI----------SEASRQSLRRDLDAS 356 Query: 179 ARIKENNDITVNKLIEAKKVFDLEKEHLKYQRLELEKK---NKLIEEQETIKKTYMEKVK 235 K+ + KL E K+ + ++ L R +L+ K +E+ + + ++ Sbjct: 357 REAKKQLEAEHQKLEEQNKISEASRQSL---RRDLDASREAKKQVEKALEEANSKLAALE 413 Query: 236 KTIASLMEKNKALELQYDELQEKIELDSRLL 266 K L E K E + ELQ K+E +++ L Sbjct: 414 KLNKELEESKKLTEKEKAELQAKLEAEAKAL 444 Score = 39.3 bits (91), Expect = 3e-05 Identities = 21/196 (10%), Positives = 56/196 (28%), Gaps = 29/196 (14%) Query: 66 SDSQTRLKNIEKQKDDISTSIENQQETIRVYQ--EEIHALSTTAR-ELKASITAINEDIK 122 + S I+ + + + Q E + + + L+A A+ Sbjct: 169 NFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKA 228 Query: 123 QTQINIDVYQKEIDVLNEKVKKNIATSQSQLYVDPLVEFVFAAVDFVSLIRRVEGMARIK 182 + ++ + K+K A + A ++ Sbjct: 229 DLEKALEGAMNFSTADSAKIKTLEAEKAALE----------------------ARQAELE 266 Query: 183 ENNDITVNKLIEAKKVFDLEKEHLKYQRLELEKKNKLIEEQETIKKTYMEKVKKTIASLM 242 + + +N + E +E Q + + +++ + + Sbjct: 267 KALEGAMNFSTADSAKIKTLEAEKAALEAEKAD----LEHQSQVLNANRQSLRRDLDASR 322 Query: 243 EKNKALELQYDELQEK 258 E K LE ++ +L+E+ Sbjct: 323 EAKKQLEAEHQKLEEQ 338 Score = 38.9 bits (90), Expect = 4e-05 Identities = 24/203 (11%), Positives = 75/203 (36%), Gaps = 24/203 (11%) Query: 63 QKISDSQTRLKNIEKQKDDISTSIENQQETIRVYQEEIHALSTTARELKASITAINEDIK 122 + Q L+ + + ST+ + +T+ + + A + + Sbjct: 186 AALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADS 245 Query: 123 QTQINIDVYQKEIDVLNEKVKKNIATSQSQLYVDPLVEFVFAAVDFVSLIRRVEGMARIK 182 ++ + ++ +++K + + + + +++ + K Sbjct: 246 AKIKTLEAEKAALEARQAELEKALEGAMNFST---------------ADSAKIKTLEAEK 290 Query: 183 ENNDITVNKLIEAKKVFDLEKEHLKYQRLE--------LEKKNKLIEEQETIKKTYMEKV 234 + L +V + ++ L+ + L+ LE +++ +EEQ I + + + Sbjct: 291 AALEAEKADLEHQSQVLNANRQSLR-RDLDASREAKKQLEAEHQKLEEQNKISEASRQSL 349 Query: 235 KKTIASLMEKNKALELQYDELQE 257 ++ + + E K LE ++ +L+E Sbjct: 350 RRDLDASREAKKQLEAEHQKLEE 372 Score = 38.1 bits (88), Expect = 7e-05 Identities = 30/226 (13%), Positives = 68/226 (30%), Gaps = 22/226 (9%) Query: 59 EYINQKISDSQTRLKNIEKQKDDISTSIENQQETIRVYQEEIHALSTTARELKASITAIN 118 E + ++K +E +K ++ + ++ + A S + L+A A+ Sbjct: 130 EGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALE 189 Query: 119 EDIKQTQINIDVYQKEIDVLNEKVKKNIATSQSQLYVDPLVEFVFAAVDFVSLIRRVEGM 178 + + ++ + K+K A A + + + Sbjct: 190 ARQAELEKALEGAMNFSTADSAKIKTLEAEKA-------------ALAARKADLEKALEG 236 Query: 179 ARIKEN-NDITVNKLIEAKKVFDLEKEHLKYQRLELEKKNKLIEEQETIKK--TYMEKVK 235 A + + L + LE + ++ N + IK ++ Sbjct: 237 AMNFSTADSAKIKTLE--AEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALE 294 Query: 236 KTIASLMEKNKALELQYD----ELQEKIELDSRLLSRVSSLEETNG 277 A L +++ L +L E +L + LEE N Sbjct: 295 AEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNK 340 Score = 32.0 bits (72), Expect = 0.006 Identities = 12/80 (15%), Positives = 34/80 (42%), Gaps = 3/80 (3%) Query: 200 DLEKEHLKYQRL--ELEKKNKLIEEQETIKKTYMEKVKKTIASLMEKNKALELQYDELQE 257 L+ ++ L+ N + E+ + K + K K+++ K + LE + +L++ Sbjct: 68 TLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEK 127 Query: 258 KIE-LDSRLLSRVSSLEETN 276 +E + + + ++ Sbjct: 128 ALEGAMNFSTADSAKIKTLE 147
>ADHESNFAMILY#Adhesin family signature. Length = 309 Score = 218 bits (557), Expect = 6e-72 Identities = 86/318 (27%), Positives = 157/318 (49%), Gaps = 23/318 (7%) Query: 1 MKKLGLMLLV---LMMLAGCQSQKNDET--GKLKVMTSFYPLYDFAQKVGGDKVAVENII 55 MKKLG +L++ ++L C S K D T KLKV+ + + D + + GDK+ + +I+ Sbjct: 1 MKKLGTLLVLFLSAIILVACASGKKDTTSGQKLKVVATNSIIADITKNIAGDKIDLHSIV 60 Query: 56 EGG-EAHGYEPSANDIIRIQESDVFIMNG----AGFEGWAPKTLKSVKNDKLK-IVDTSQ 109 G + H YEP D+ + E+D+ NG G W K +++ K + K S Sbjct: 61 PIGQDPHEYEPLPEDVKKTSEADLIFYNGINLETGGNAWFTKLVENAKKTENKDYFAVSD 120 Query: 110 GVTLHEGHDHDHDDHDHEEHHHGEYDPHIWMNPMNAYQQMKNIKDAFVEVDPENKDYYEE 169 GV + + + DPH W+N N KNI DP NK++YE+ Sbjct: 121 GVDVIYLEGQNEKGKE---------DPHAWLNLENGIIFAKNIAKQLSAKDPNNKEFYEK 171 Query: 170 NFKRYGAEFESLSNDFENKLRNV--KNKEVVVDHTAYGYMLEPYGIEQVAIAGSLLSSEP 227 N K Y + + L + ++K + + K +V A+ Y + YG+ I E Sbjct: 172 NLKEYTDKLDKLDKESKDKFNKIPAEKKLIVTSEGAFKYFSKAYGVPSAYIWEINTEEEG 231 Query: 228 TAKQVDESIQYIKNQNIKAIYMESLSNDKLLQTISKETGVKILKLNTLESLSKQDLENGN 287 T +Q+ ++ ++ + ++++ES +D+ ++T+S++T + I +S+++Q + G+ Sbjct: 232 TPEQIKTLVEKLRQTKVPSLFVESSVDDRPMKTVSQDTNIPIYAQIFTDSIAEQG-KEGD 290 Query: 288 DYFKVMNENLESLVEGLS 305 Y+ +M NL+ + EGL+ Sbjct: 291 SYYSMMKYNLDKIAEGLA 308
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 45.8 bits (108), Expect = 3e-07 Identities = 27/196 (13%), Positives = 62/196 (31%), Gaps = 21/196 (10%) Query: 59 EYINDKLADSETLLRRIREQKDTVLEEIEDNNELLEVYQKEILVLKERVTEIQESIRMIE 118 E + ++ + +K + + + LE ++ ++ + Sbjct: 165 EGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALA 224 Query: 119 ADVVETEAKIEVFEKKIKVLEEKVKLNIRASQSSLYVNNYIEFVFGAADFVDLIRRMEGV 178 A + E +E K+K + A +++L +E Sbjct: 225 ARKADLEKALEGAMNFSTADSAKIK-TLEAEKAALEARQ---------------AELEKA 268 Query: 179 TRIKQSNDGVVNELIAARKAFDEEKEHLLSQ-KEQMEAKEASVKKEEHDIKVYQMEVRDL 237 + + I +A E + + Q + A+ + D+ R+ Sbjct: 269 LEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLD----ASREA 324 Query: 238 IQSLMAKHQVLEDQSK 253 + L A+HQ LE+Q+K Sbjct: 325 KKQLEAEHQKLEEQNK 340 Score = 36.2 bits (83), Expect = 3e-04 Identities = 38/228 (16%), Positives = 83/228 (36%), Gaps = 33/228 (14%) Query: 58 TEYINDKLADSETLLRRIREQKDTVLEEIEDNNELLEVYQKEILVLKERVTEIQESIRMI 117 + + + A + + + + ++ ++ + E L+ R E+++++ Sbjct: 213 IKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGA 272 Query: 118 EADVVETEAKIEVFEKKIKVLEEKVKLNIRASQSSLYVNNYIEFVFGAADFVDLIRRMEG 177 AKI+ E + LE + SQ A+ L R ++ Sbjct: 273 MNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLN------------ANRQSLRRDLDA 320 Query: 178 VTRIKQSNDGVVNELI-------AARKAFDEEKEHLLSQKEQMEAKEASVKKEEHDIKVY 230 K+ + +L A+R++ + + K+Q+EA+ ++++ + Sbjct: 321 SREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEAS 380 Query: 231 QMEV-RDLIQSLMAKHQV-------------LEDQSKEVQEKLSFENK 264 + + RDL S AK QV LE +KE++E K Sbjct: 381 RQSLRRDLDASREAKKQVEKALEEANSKLAALEKLNKELEESKKLTEK 428
>THERMOLYSIN#Thermolysin metalloprotease (M4) family signature. Length = 544 Score = 33.8 bits (77), Expect = 6e-04 Identities = 13/105 (12%), Positives = 34/105 (32%), Gaps = 12/105 (11%) Query: 157 KILGASDEAILADYLETNTMTHELVEKELAGFKVKENLTDD----------QVNNIRGYM 206 +LG + ++ YL+ T +L + + N D+ + Sbjct: 45 SLLGRCSQELVYRYLDQEKNTFQLGGQARERLSLIGNKLDELGHTVMRFEQAIAASLCMG 104 Query: 207 TVDTSYLKEAWDAIIEIYGDFETYVAKGLLLSDKDVETLKQIYIE 251 V +++ + + + G + K L ++ + + I Sbjct: 105 AVLVAHVNDG--ELSSLSGTLIPNLDKRTLKTEAAISIQQAEMIA 147
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 30.3 bits (68), Expect = 0.014 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%) Query: 313 IGDIIPGPALAHKASYEAKVVAEVIAGKTAGFDYTVIPSVSYTHPEIAVVGM 364 +GDI+ G A+ +A + I A YT S+ Y P IA+ G+ Sbjct: 110 LGDIVLGEMAW--AATKAALAGAGIGVVAAALGYTQWLSLLYALPVIALTGL 159
>AUTOINDCRSYN#Autoinducer synthesis protein signature. Length = 216 Score = 27.1 bits (60), Expect = 0.021 Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 12/61 (19%) Query: 8 FQDLTKEELFEMYRLRIDVFV--------VEQECAYQEIDDFD-LTALHVFARDDAGVLV 58 L++ + E++ LR + F E D +D ++F D V+ Sbjct: 9 HTLLSETKSGELFTLRKETFKDRLNWAVQCTDGM---EFDQYDNNNTTYLFGIKDNTVIC 65 Query: 59 G 59 Sbjct: 66 S 66
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 33.0 bits (75), Expect = 0.008 Identities = 12/43 (27%), Positives = 17/43 (39%) Query: 145 AKAEEPKVEEPKVEEPMVEEPKAEEPKVQEPAADEDVVDEPKA 187 EP EP+VE EP + P V+++PK Sbjct: 52 PADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKP 94
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 72.9 bits (179), Expect = 4e-17 Identities = 24/119 (20%), Positives = 48/119 (40%) Query: 3 KILFVEDDVEYSDFLKEKLEKVPYDVDCVYSGIDAMESLALNHYDLLLTDLELDVINGLR 62 IL +DD L + L + YDV + +A DL++TD+ + N Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 63 LVEASRKMSPGTRSIILTGKPSNSTELESLRLHTDLYIEKSKSLKVILQYIANILDREE 121 L+ +K P ++++ + + T +++ Y+ K L ++ I L + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 45.8 bits (108), Expect = 3e-07 Identities = 36/249 (14%), Positives = 89/249 (35%), Gaps = 33/249 (13%) Query: 36 ETTKEQEERRAQIEENKKKLSALEGSQKDIKANLTEEMKNLSGYKEQIASLDAKIKEIEG 95 E+ A+ E +K L A + + + A L+ ++ Sbjct: 180 TLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMN 239 Query: 96 EIRVSEAQIVQLQKSIDDRQAKIEETDVKVKSYMLNAQSATRVNGYFEFMMTGEDFSQIV 155 A+I L+ +A+ E + ++ M + + + E ++ Sbjct: 240 FSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLE--------AEKA 291 Query: 156 RRFEVLSSIKRYNEELVRSIYKIKLELEADK-KLQEVEREEIKLHKE------------- 201 + ++ ++ L + ++ +L+A + +++E E KL ++ Sbjct: 292 ALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRR 351 Query: 202 DIELQKETAKIYEKHVEEIVKELQKQEAELQ----------DELDEIKYVNAGHESQIKA 251 D++ +E K E +++ ++ + EA Q + +++ S++ A Sbjct: 352 DLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQVEKALEEANSKLAA 411 Query: 252 LAEQLANEL 260 L E+L EL Sbjct: 412 L-EKLNKEL 419 Score = 45.8 bits (108), Expect = 3e-07 Identities = 48/249 (19%), Positives = 97/249 (38%), Gaps = 26/249 (10%) Query: 32 AVSSETTKEQEERRAQIEENKKKLSALEGSQKDIKANLTEEMKNLSGYKEQIASLDAKIK 91 S+ + + + A+ + + LE + + T + + + + A+L+A+ Sbjct: 204 NFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQA 263 Query: 92 EIEGEIRVSEAQIVQLQKSIDDRQAKIEETDVKVKSYM--LNAQSATRVNGYFEFMMTGE 149 E+E + + I +A+ + + +A R + + + E Sbjct: 264 ELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASRE 323 Query: 150 DFSQIVRRFEVL--------SSIKRYNEELVRSI-YKIKLE-----LEADKKLQEVEREE 195 Q+ + L +S + +L S K +LE LE K+ E R+ Sbjct: 324 AKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQS 383 Query: 196 IKLHKEDIELQKETAKIYEKHVEE---IVKELQKQEAELQDEL----DEIKYVNAGHESQ 248 ++ D++ +E K EK +EE + L+K EL++ E + A E++ Sbjct: 384 LR---RDLDASREAKKQVEKALEEANSKLAALEKLNKELEESKKLTEKEKAELQAKLEAE 440 Query: 249 IKALAEQLA 257 KAL E+LA Sbjct: 441 AKALKEKLA 449
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 52.4 bits (125), Expect = 2e-09 Identities = 45/229 (19%), Positives = 85/229 (37%), Gaps = 33/229 (14%) Query: 32 YAEDIESLNNNIAQREKELKEQQSKQANIKEQLSEEVAKLDDYRQQIKNLEAEIESMKTA 91 + + I E E +++QA +++ L + +IK LEAE +++ Sbjct: 237 AMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAE 296 Query: 92 IATSEEEIKRLQASIEERAKKIKETEEKVKGYMVNAQSSTRVNGYFEFVMGAADFAEMVR 151 A E + + L A+ + + + + E K Q N E A + R Sbjct: 297 KADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISE-----ASRQSLRR 351 Query: 152 RLEGMGAIKRYNEDLIREMNEVKAELEADKAKQEEEKQAIVLR--------------KEA 197 L+ E K +LEA+ K EE+ + K+ Sbjct: 352 DLD--------------ASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQ 397 Query: 198 TEIQKEEAKLLEDRVRIVITELHQKEKEAQEQIATINDKNKADAEKIKQ 246 E EEA + + EL + +K +++ A + K +A+A+ +K+ Sbjct: 398 VEKALEEANSKLAALEKLNKELEESKKLTEKEKAELQAKLEAEAKALKE 446 Score = 31.6 bits (71), Expect = 0.007 Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 12/102 (11%) Query: 35 DIESLNNNIAQREKELKEQQSKQANIKEQLSEEVAKLDDYRQQIKNLEAEIESMKTAIAT 94 +E N+ +A EK KE + + +++ +E AKL EAE +++K +A Sbjct: 401 ALEEANSKLAALEKLNKELEESKKLTEKEKAELQAKL----------EAEAKALKEKLAK 450 Query: 95 SEEEIKRLQASIEERAK--KIKETEEKVKGYMVNAQSSTRVN 134 EE+ +L+A ++ K + V G Q+ T+ N Sbjct: 451 QAEELAKLRAGKASDSQTPDAKPGNKAVPGKGQAPQAGTKPN 492
>FLAGELLIN#Flagellin signature. Length = 507 Score = 29.2 bits (65), Expect = 0.021 Identities = 25/130 (19%), Positives = 53/130 (40%), Gaps = 11/130 (8%) Query: 47 STITKSMEQSVQIHAQISNDFEEKSQINEIQKQIEQLPEVLD----------VKFSSKEN 96 + I ++++ ++ Q +N S + IQ +I+Q E +D VK S++N Sbjct: 82 NEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEIDRVSNQTQFNGVKVLSQDN 141 Query: 97 ELDAFIRANDSEDAESLYGGYRGENNPMLNAFLINAKSGDEIKDLSNKIAKIEGVYKTSY 156 ++ + AND E ++ + L+ F +N + DL + + G + Sbjct: 142 QMKIQVGANDGE-TITIDLQKIDVKSLGLDGFNVNGPKEATVGDLKSSFKNVTGYDTYAV 200 Query: 157 GGSGTTDFLG 166 G + + Sbjct: 201 GANKYRVDVN 210
>SECA#SecA protein signature. Length = 901 Score = 999 bits (2584), Expect = 0.0 Identities = 385/834 (46%), Positives = 511/834 (61%), Gaps = 54/834 (6%) Query: 1 MAGFLSNLF-SGDRKILNEIEKIAHEIDALADETRALSDEALKEKTNEFKNRIAQGESLD 59 + L+ +F S + + L + K+ + I+A+ E LSDE LK KT EF+ R+ +GE L+ Sbjct: 2 LIKLLTKVFGSRNDRTLRRMRKVVNIINAMEPEMEKLSDEELKGKTAEFRARLEKGEVLE 61 Query: 60 DLLVEAYAVSREAAYRVIGEFPYVVQLMGAIILHRGDIAEMKTGEGKTLTAIMPTYLNAL 119 +L+ EA+AV REA+ RV G + VQL+G ++L+ IAEM+TGEGKTLTA +P YLNAL Sbjct: 62 NLIPEAFAVVREASKRVFGMRHFDVQLLGGMVLNERCIAEMRTGEGKTLTATLPAYLNAL 121 Query: 120 EGKGVHVITVNEYLAQRDAEWMGEIHRFLGLTVGINVRALSPSGKREVYECDITYTTNSE 179 GKGVHV+TVN+YLAQRDAE + FLGLTVGIN+ + KRE Y DITY TN+E Sbjct: 122 TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAYAADITYGTNNE 181 Query: 180 VGFDYLRDNMVTKVEQRVLRPLNYALVDEVDSILIDESRTPLIISGGARDGAKLYESSDK 239 GFDYLRDNM E+RV R L+YALVDEVDSILIDE+RTPLIISG A D +++Y+ +K Sbjct: 182 YGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNK 241 Query: 240 FAKKLSEGS-----------DYVIDVKSKTVQLTEAGVEKAERTF-------KVDNLYDL 281 L + +D KS+ V LTE G+ E + ++LY Sbjct: 242 IIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSP 301 Query: 282 DNTSLVHHINNALKANYIMLNDIEYVVQNNEVVIVDQFTGRLMEGREYSDGLHQALCAKE 341 N L+HH+ AL+A+ + D++Y+V++ EV+IVD+ TGR M+GR +SDGLHQA+ AKE Sbjct: 302 ANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKE 361 Query: 342 GVTIKQETVTLATVTYQNFFRLYNKLSGMTGTAKTEEEEFLEIYNMRVLEVPTNRPIARE 401 GV I+ E TLA++T+QN+FRLY KL+GMTGTA TE EF IY + + VPTNRP+ R+ Sbjct: 362 GVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRK 421 Query: 402 DLPDLVYGTRKAKFEALIETVRELNEKGQPVLVGTVAVETSEYLSMMMKQRKIKHEVLNA 461 DLPDLVY T K +A+IE ++E KGQPVLVGT+++E SE +S + + IKH VLNA Sbjct: 422 DLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNA 481 Query: 462 KNHAREAQIIEKAGRKGSVTIATNMAGRGTDIKL-------------------------- 495 K HA EA I+ +AG +VTIATNMAGRGTDI L Sbjct: 482 KFHANEAAIVAQAGYPAAVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADW 541 Query: 496 ---DEESRALGGLAVLGSERHESRRIDNQLRGRSGRQGDPGMSRFFVSFEDDLMLRHGSE 552 + GGL ++G+ERHESRRIDNQLRGRSGRQGD G SRF++S ED LM S+ Sbjct: 542 QVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDALMRIFASD 601 Query: 553 RFENVYSQLG---DVAIENKVITKQISAAQRRVEGVNFDIRKTLLDYDDVLRQQREIIYE 609 R + +LG AIE+ +TK I+ AQR+VE NFDIRK LL+YDDV QR IY Sbjct: 602 RVSGMMRKLGMKPGEAIEHPWVTKAIANAQRKVESRNFDIRKQLLEYDDVANDQRRAIYS 661 Query: 610 QRDYVLENEDVHGIIKEMYKRVVSDTIASYTIPESKDFSIDKEGLVGALDKLGLID--DS 667 QR+ +L+ DV I + + V TI +Y P+S + D GL L +D + Sbjct: 662 QRNELLDVSDVSETINSIREDVFKATIDAYIPPQSLEEMWDIPGLQERLKNDFDLDLPIA 721 Query: 668 FDQSSLDNASQEEIQAIITDAAWEKYEIKITDV-QDQFTRVEKEVVLNMIDRSWVDHIDA 726 +E ++ I + E Y+ K V + EK V+L +D W +H+ A Sbjct: 722 EWLDKEPELHEETLRERILAQSIEVYQRKEEVVGAEMMRHFEKGVMLQTLDSLWKEHLAA 781 Query: 727 MSKLREGIHLRSYAQDKPLQAYVTEGFEMFEEMLGQIAQDIVMFCVNVKIEYRQ 780 M LR+GIHLR YAQ P Q Y E F MF ML + +++ V++ + Sbjct: 782 MDYLRQGIHLRGYAQKDPKQEYKRESFSMFAAMLESLKYEVISTLSKVQVRMPE 835