>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 47.4 bits (112), Expect = 5e-08 Identities = 39/218 (17%), Positives = 88/218 (40%) Query: 16 AQKKEEEFKEVREENAKLNRDKNDLARERDKLADQNKTLTETNQKLTTEKERLERESKNL 75 E+ + + + L E+ L + L + + + K L Sbjct: 157 KADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTL 216 Query: 76 ATDKDNLTNQLNASQKQVQALGQSQQALKNEKAELTNKNAELQKRVKELEQSQQVLKNGN 135 +K L + +K ++ A + L + A L+ R ELE++ + N + Sbjct: 217 EAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFS 276 Query: 136 AELSKEKDNLTKDKENLTKDKAELQKQVQALEQSQQVLQNEKAELLGENQKLADKNKVLT 195 S + L +K L +KA+L+ Q Q L ++Q L+ + ++L +++ L Sbjct: 277 TADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLE 336 Query: 196 TEKDNLTKDKENLTKDLSTAKTQAEQTSQKLKELEQRH 233 + +++L +DL ++ +Q + ++LE+++ Sbjct: 337 EQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQN 374 Score = 47.0 bits (111), Expect = 7e-08 Identities = 34/231 (14%), Positives = 73/231 (31%) Query: 4 KSPNDTQENPKDAQKKEEEFKEVREENAKLNRDKNDLARERDKLADQNKTLTETNQKLTT 63 K+ E Q+ E ++ + + + L + L L Sbjct: 103 KNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEK 162 Query: 64 EKERLERESKNLATDKDNLTNQLNASQKQVQALGQSQQALKNEKAELTNKNAELQKRVKE 123 E S + L + A + + L ++ + N + K L+ Sbjct: 163 ALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAA 222 Query: 124 LEQSQQVLKNGNAELSKEKDNLTKDKENLTKDKAELQKQVQALEQSQQVLQNEKAELLGE 183 L + L+ + + L +KA L+ + LE++ + N + Sbjct: 223 LAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAK 282 Query: 184 NQKLADKNKVLTTEKDNLTKDKENLTKDLSTAKTQAEQTSQKLKELEQRHA 234 + L + L EK +L + L + + + + + + K+LE H Sbjct: 283 IKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQ 333 Score = 39.3 bits (91), Expect = 2e-05 Identities = 39/250 (15%), Positives = 81/250 (32%), Gaps = 1/250 (0%) Query: 55 TETNQKLTTEKERLERESKNLATDKDNLTNQLNASQKQVQALGQSQQALKNEKAELTNKN 114 T+T +K+ ++ E E+ L +L+ A + L + K + + Sbjct: 49 TDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSL 108 Query: 115 AELQKRVKELEQSQQVLKNGNAELSKEKDNLTKDKENLTKDKAELQKQVQALEQSQQVLQ 174 +E +++ELE + L+ + + L +KA L + LE++ + Sbjct: 109 SEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAM 168 Query: 175 NEKAELLGENQKLADKNKVLTTEKDNLTKDKENLTKDLSTAKTQAEQTSQKLKELEQRHA 234 N + + L + L + L K E + + + + L R A Sbjct: 169 NFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKA 228 Query: 235 PYQKLEKLYEVFLEVKDRLNFNFVATTHSAMDLIASVLSDSKYYLESLYNKASQELSDKR 294 +K + F A + A L + + S ++ Sbjct: 229 DLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAE-LEKALEGAMNFSTADSAKIKTLE 287 Query: 295 SDKGEKLAEL 304 ++K AE Sbjct: 288 AEKAALEAEK 297 Score = 38.1 bits (88), Expect = 5e-05 Identities = 43/241 (17%), Positives = 92/241 (38%) Query: 4 KSPNDTQENPKDAQKKEEEFKEVREENAKLNRDKNDLARERDKLADQNKTLTETNQKLTT 63 + + E+ + + + L E+ LA + L + + Sbjct: 180 TLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMN 239 Query: 64 EKERLERESKNLATDKDNLTNQLNASQKQVQALGQSQQALKNEKAELTNKNAELQKRVKE 123 + K L +K L + +K ++ A + L + A L+ + Sbjct: 240 FSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKAD 299 Query: 124 LEQSQQVLKNGNAELSKEKDNLTKDKENLTKDKAELQKQVQALEQSQQVLQNEKAELLGE 183 LE QVL L ++ D + K+ L + +L++Q + E S+Q L+ + Sbjct: 300 LEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREA 359 Query: 184 NQKLADKNKVLTTEKDNLTKDKENLTKDLSTAKTQAEQTSQKLKELEQRHAPYQKLEKLY 243 ++L +++ L + +++L +DL ++ +Q + L+E + A +KL K Sbjct: 360 KKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQVEKALEEANSKLAALEKLNKEL 419 Query: 244 E 244 E Sbjct: 420 E 420
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 30.2 bits (68), Expect = 0.022 Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 5/79 (6%) Query: 295 ESL-TLAKKHCVKNCKKALEGFTEKIKEATNDSNAVNE---AFDSLETELERATENLSQK 350 E+L +AK+ + + + K+ E + ++A+ +F+ L + A E S Sbjct: 89 EALDAVAKQSEKPHLSQLMAAVRSKVMEGHSLADAMKCFPGSFERLYCAMVAAGET-SGH 147 Query: 351 IDPILERNEDYTQKALEYR 369 +D +L R DYT++ + R Sbjct: 148 LDAVLNRLADYTEQRQQMR 166
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 1044 bits (2701), Expect = 0.0 Identities = 353/569 (62%), Positives = 442/569 (77%), Gaps = 4/569 (0%) Query: 3 KISRKEYASMYGPTTGDKVRLGDTDLIAEVEHDYTIYGEELKFGGGKTLREGMSQSN-NP 61 ++SR YA+M+GPT GDKVRL DT+L EVE D+T +GEE+KFGGGK +R+GM QS Sbjct: 4 RMSRAAYANMFGPTVGDKVRLADTELFIEVEKDFTTHGEEVKFGGGKVIRDGMGQSQVTR 63 Query: 62 SKEELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEAL 121 +D +ITNALI+D+ GI KADIG+KDG+IA IGK GN DMQ GV + VGP TE + Sbjct: 64 EGGAVDTVITNALILDHWGIVKADIGLKDGRIAAIGKAGNPDMQPGV--TIIVGPGTEVI 121 Query: 122 AGEGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKF 181 AGEG IVTAGG+D+HIHFI PQQI A SG+T M+GGGTGPA GT ATT TPG ++ Sbjct: 122 AGEGKIVTAGGMDSHIHFICPQQIEEALMSGLTCMLGGGTGPAHGTLATTCTPGPWHIAR 181 Query: 182 MLRAAEEYSMNFGFLAKGNVSNDASLADQIEAGAIGFKIHEDWGTTPSAINHALDVADKY 241 M+ AA+ + MN F KGN S +L + + GA K+HEDWGTTP+AI+ L VAD+Y Sbjct: 182 MIEAADAFPMNLAFAGKGNASLPGALVEMVLGGATSLKLHEDWGTTPAAIDCCLSVADEY 241 Query: 242 DVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPASTN 301 DVQV IHTDTLNE+G VEDT+AAI GRT+H +HTEGAGGGHAPDII++ G+ N++P+STN Sbjct: 242 DVQVMIHTDTLNESGFVEDTIAAIKGRTIHAYHTEGAGGGHAPDIIRICGQPNVIPSSTN 301 Query: 302 PTIPFTVNTEAEHMDMLMVCHHLDKSIKEDVQFADSRIRPQTIAAEDTLHDMGIFSITSS 361 PT P+TVNT AEH+DMLMVCHHL +I ED+ FA+SRIR +TIAAED LHD+G FSI SS Sbjct: 302 PTRPYTVNTLAEHLDMLMVCHHLSPTIPEDIAFAESRIRKETIAAEDILHDIGAFSIISS 361 Query: 362 DSQAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISE 421 DSQAMGRVGEV RTWQTADK K++ GRLKEE GDNDNFR+KRY++KYTINPAIAHG+S Sbjct: 362 DSQAMGRVGEVAIRTWQTADKMKRQRGRLKEETGDNDNFRVKRYIAKYTINPAIAHGLSH 421 Query: 422 YVGSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPVYYREMFAH 481 +GS+EVGK ADLVLW+PAFFGVKP+M++ GG IA + MGD NASIPTPQPV+YR MF Sbjct: 422 EIGSLEVGKRADLVLWNPAFFGVKPDMVLLGGTIAAAPMGDPNASIPTPQPVHYRPMFGA 481 Query: 482 HGKAKYDANITFVSQAAYDKGIKEELGLERQVLPVKNCR-NITKKDMQFNDTTAHIEVNP 540 +G+++ ++++TFVSQA+ D G+ LG+ ++++ V+N R I K M N T HIEV+P Sbjct: 482 YGRSRTNSSVTFVSQASLDAGLAGRLGVAKELVAVQNTRGGIGKASMIHNSLTPHIEVDP 541 Query: 541 ETYHVFVDGKEVTSKPANKVSLAQLFSIF 569 ETY V DG+ +T +PA + +AQ + +F Sbjct: 542 ETYEVRADGELLTCEPATVLPMAQRYFLF 570
>FLAGELLIN#Flagellin signature. Length = 507 Score = 39.6 bits (92), Expect = 3e-05 Identities = 26/258 (10%), Positives = 65/258 (25%), Gaps = 3/258 (1%) Query: 22 SSDSLTQQQAQNTASSDSKEATTLENTASTDNTTASADEAYIKSADTTVAGAAKKVETDN 81 D + + + + A ++ + A + D Sbjct: 182 VGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTDDA 241 Query: 82 TAVQSAEQTLKTDVAKVQADASAKNFDETTFTKDQAAEQTAETTLQTAEKTFDTDQNALN 141 + + T A+A A + + T + D + Sbjct: 242 ENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGKVST 301 Query: 142 TA--LKDQTPSTPPTPTPSTSGGNTITSQLTKDTTMVNGFSKVSVDSMNTTLSGVTQLSQ 199 T K T + T+ S T++VNG + N + + Sbjct: 302 TINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSDLEAN 361 Query: 200 QTATISNLLSGSPDLGNVITNAQGLSSAFSALESAQNTLKGYLDSSSATIGQLTNGSNAV 259 + ++ + ++ A + + + + Sbjct: 362 NAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINEDAAAAKK-STANP 420 Query: 260 VGALDKAINQVDMALADL 277 + ++D A+++VD + L Sbjct: 421 LASIDSALSKVDAVRSSL 438
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.3 bits (65), Expect = 0.011 Identities = 9/18 (50%), Positives = 11/18 (61%) Query: 8 LILSGPSGAGKSTLTKYL 25 ++L G G GKSTL L Sbjct: 599 VVLEGTGGIGKSTLINTL 616
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 67.4 bits (164), Expect = 9e-14 Identities = 50/239 (20%), Positives = 86/239 (35%), Gaps = 14/239 (5%) Query: 148 EALAKEEPNNEEQLLPTLDAQEGETPKEEAQEEVKKEEVKEMQEEIKEKEKQEVAESPQD 207 E +A+ + P ++ ET E +++E K E E + +EVA+ Sbjct: 1015 EEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAK---- 1070 Query: 208 EEKPKDDETQGSVETPKDEEVSKELETQEELETPREETQEQEPIKEETQEIKEEKQEKTQ 267 E K + E + +KE +T E ET E +E+ K ET++ +E + +Q Sbjct: 1071 EAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKA--KVETEKTQEVPKVTSQ 1128 Query: 268 DSPSAQELEAMQELVKEIQENS-------NDQENKKETQETQETQETQENTETPQDIETQ 320 SP ++ E +Q + +EN + Q +ET N E P T Sbjct: 1129 VSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTT 1188 Query: 321 ELEIPKEEETQEVAEKTQVQGLEKEEIAETPQEKEIQETQDETPQELEVQDEKLQENET 379 E E Q E + P+ + + + P +E + T Sbjct: 1189 VNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSV-PHNVEPATTSSNDRST 1246 Score = 56.6 bits (136), Expect = 2e-10 Identities = 42/196 (21%), Positives = 70/196 (35%), Gaps = 4/196 (2%) Query: 309 ENTETPQDIETQELEIPKEEETQEVAEKTQVQGLEKEEIAETPQEKEIQETQDETPQELE 368 N TP +I+ +P E ++ V +ET + Q+ E Sbjct: 995 TNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKN 1054 Query: 369 VQD--EKLQENETPKDENMQESVQNLQEKETQELETPQAQDETLQEKETPQEETQETQKK 426 QD E +N E N Q E + + + +T + KET E +E K Sbjct: 1055 EQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKV 1114 Query: 427 EAPQTQEKETPQTQEDHYESIEDIPEPVMAKAMGEELPFLNEAVAKTPNN-ENDTETPKE 485 E +TQE +Q + + +P A+ E P +N ++ N DTE P + Sbjct: 1115 ETEKTQEVPKVTSQVSPKQEQSETVQP-QAEPARENDPTVNIKEPQSQTNTTADTEQPAK 1173 Query: 486 NDTETPQEKEESDKTS 501 + ++ T Sbjct: 1174 ETSSNVEQPVTESTTV 1189 Score = 56.6 bits (136), Expect = 2e-10 Identities = 61/320 (19%), Positives = 110/320 (34%), Gaps = 40/320 (12%) Query: 223 PKDEEVSKELETQEELETPREETQEQEPIKEETQEIKEEKQEKTQDSPSAQELEAMQELV 282 P+ E+ ++ ++T + TP + + +EI + ++ P A + Sbjct: 983 PEVEKRNQTVDT-TNITTPNNIQADVPSVPSNNEEIA--RVDEAPVPPPAPATPSETTET 1039 Query: 283 KEIQENSNDQENKKETQETQETQETQENTETPQDIETQELEIPKEEETQEVAEKTQVQGL 342 EN K+ +T E E T Q+ E + + + E Q Sbjct: 1040 VA--------ENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSE 1091 Query: 343 EKEEIAETPQEKEIQETQDETPQELEVQDE--KLQENETPKDENMQESVQNLQEKETQEL 400 KE +E E +++ E E E K+ +PK +E E Sbjct: 1092 TKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPK-------------QEQSET 1138 Query: 401 ETPQAQDETLQEKETPQEETQETQKKEAPQTQEKETPQTQEDHYESIEDIPEPVMAKAMG 460 PQA+ P E T + PQ+Q T T++ E+ ++ +PV Sbjct: 1139 VQPQAE---------PARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTV 1189 Query: 461 EELPFLNEAVAKTPNNENDTETPKENDTETPQEKEESDKTSSPLELRLNLQDLLKSLNQE 520 +V + P N T ++E+ K ++ S + N++ S N Sbjct: 1190 NTGN----SVVENPENTTPATTQPTVNSES-SNKPKNRHRRSVRSVPHNVEPATTSSNDR 1244 Query: 521 SFKSLLENKTLNIKITLEDK 540 S +L + + N L D Sbjct: 1245 STVALCDLTSTNTNAVLSDA 1264 Score = 48.1 bits (114), Expect = 8e-08 Identities = 27/189 (14%), Positives = 68/189 (35%), Gaps = 5/189 (2%) Query: 142 ENLGDLEALAKEEPNNEEQLLPTLDAQEGETPKEEAQEEVKKEEVKEMQEEIKEKEKQEV 201 E +AKE +N + T + + + +E Q KE +EE + E ++ Sbjct: 1060 ETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKT 1119 Query: 202 AESPQ--DEEKPKDDETQGSVETPKDEEVSKELETQEELETPREETQEQEPIKEETQEIK 259 E P+ + PK ++++ E ++E + ++ P+ +T ++ +E Sbjct: 1120 QEVPKVTSQVSPKQEQSE---TVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETS 1176 Query: 260 EEKQEKTQDSPSAQELEAMQELVKEIQENSNDQENKKETQETQETQETQENTETPQDIET 319 ++ +S + ++ E + + E+ + + + P ++E Sbjct: 1177 SNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEP 1236 Query: 320 QELEIPKEE 328 Sbjct: 1237 ATTSSNDRS 1245 Score = 42.0 bits (98), Expect = 6e-06 Identities = 23/156 (14%), Positives = 51/156 (32%), Gaps = 2/156 (1%) Query: 168 QEGETPKEEAQEEVKKEEVKEMQEEIKEKEKQEVAESPQDEEKPKDDETQGSVETPKDEE 227 E + +EE K E ++ QE K + + + +P+ + + + T +E Sbjct: 1098 TETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKE 1157 Query: 228 VSKELETQEELETPREETQEQEPIKEETQEIKEEKQEKTQDSPSAQELEAMQELVKEIQE 287 + T + E P +ET + T+ ++P Q V Sbjct: 1158 PQSQTNTTADTEQPAKETS-SNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESS 1216 Query: 288 NSNDQENKKETQETQETQETQ-ENTETPQDIETQEL 322 N +++ + E ++ + +L Sbjct: 1217 NKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDL 1252 Score = 31.2 bits (70), Expect = 0.015 Identities = 25/120 (20%), Positives = 41/120 (34%), Gaps = 6/120 (5%) Query: 111 QKKLGSNASELEPSQNLDPTQEILETNWDELENLGDLEALAKEEPNNEEQLLPTLDA--- 167 Q++ + + EP++ DPT I E + D E AKE +N EQ + Sbjct: 1133 QEQSETVQPQAEPARENDPTVNIKEPQ-SQTNTTADTEQPAKETSSNVEQPVTESTTVNT 1191 Query: 168 --QEGETPKEEAQEEVKKEEVKEMQEEIKEKEKQEVAESPQDEEKPKDDETQGSVETPKD 225 E P+ + E + K + ++ V P + E S D Sbjct: 1192 GNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCD 1251
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 190 bits (485), Expect = 5e-63 Identities = 51/172 (29%), Positives = 84/172 (48%), Gaps = 18/172 (10%) Query: 56 GERPLFADRRAMKPNDLITIIVSEKASANYSSS----KDYKSTSGGNSTPPRLTYNGLDE 111 G +PLF DRR D +TI++ E SA+ SSS +D K+ G ++ P L GL Sbjct: 61 GYQPLFEDRRPRNIGDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVPRYL--QGLFG 118 Query: 112 RKKQEAQYLDDKNNYNFTKSSNNTNFKGGGSQKKSEDLEIVLSARIIKVLENGNYFIYGN 171 + + + S F G G S L+ + +VL NGN + G Sbjct: 119 NARADVEA------------SGGNTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGE 166 Query: 172 KEVLVDGEKQILKVSGVIRPYDIERNNTIQSKFLADAKIEYTNLGHLSDSNK 223 K++ ++ + ++ SGV+ P I +NT+ S +ADA+IEY G+++++ Sbjct: 167 KQIAINQGTEFIRFSGVVNPRTISGSNTVPSTQVADARIEYVGNGYINEAQN 218
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 28.0 bits (62), Expect = 0.015 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 3/49 (6%) Query: 102 RGETILKALERIAFE---EFQLNSLHLEVMENNFKAIAFYEKNHYELEG 147 R + + AL A E E L LE + N A FY K+H+ + Sbjct: 102 RKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFIIGA 150
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 198 bits (504), Expect = 2e-57 Identities = 115/461 (24%), Positives = 190/461 (41%), Gaps = 67/461 (14%) Query: 3 NIRNIAVIAHVDHGKTTLVDGLLSQSGTFSEREKVDE--RVMDSNDLEKERGITILSKNT 60 I NI V+AHVD GKTTL + LL SG +E VD+ D+ LE++RGITI + T Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 61 AIYYKDTKINIIDTPGHADFGGEVERVLKMVDGVLLLVDAQEGVMPQTKFVVKKALSFGI 120 + +++TK+NIIDTPGH DF EV R L ++DG +LL+ A++GV QT+ + GI Sbjct: 62 SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGI 121 Query: 121 CPIVVVNKIDKPAAEPDRVVDEVFDLF---------VAMGASDKQLDFPV-----VYAAA 166 I +NKID+ + V ++ + V + + +F Sbjct: 122 PTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEG 181 Query: 167 RDGYAMKSLDDE----------------------------KKNL--EPLFETILEHVPSP 196 D K + + K N+ + L E I S Sbjct: 182 NDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSS 241 Query: 197 SGSVDEPLQMQIFTLDYDNYVGKIGIARVFNGSVKKNESVLLMKSDGSKENGRITKLIGF 256 + L ++F ++Y ++ R+++G + +SV + KE +IT++ Sbjct: 242 THRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRI----SEKEKIKITEMYTS 297 Query: 257 LGLARTEIENAYAGDIVALAG--FNAMDV-GDSVVDPTNPMPLDPMHLEEPTMSVYFAVN 313 + +I+ AY+G+IV L V GD+ + P +P P + + Sbjct: 298 INGELCKIDKAYSGEIVILQNEFLKLNSVLGDTKLLPQRERIENP----LPLLQTTVEPS 353 Query: 314 DSPLAGLEGKHVTANKLKDRLLKEMQTNIAMKCEEMGEGKFKVSGRGELQITILAENLRR 373 + + D LL+ + + +S G++Q+ + L+ Sbjct: 354 KPQQREMLLDALLEISDSDPLLRYYVDSAT--------HEIILSFLGKVQMEVTCALLQE 405 Query: 374 E-GFEFSISRPEVIIKEENGVKCEPFEHLVIDTPQDFSGAI 413 + E I P VI E K E H+ + P F +I Sbjct: 406 KYHVEIEIKEPTVIYMERPLKKAEYTIHIEVP-PNPFWASI 445 Score = 41.8 bits (98), Expect = 8e-06 Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 1/80 (1%) Query: 396 EPFEHLVIDTPQDFSGAIIERLGKRKAEMKAMNPMSDGYTRLEFEIPARGLIGYRSEFLT 455 EP+ I PQ++ K A + + + L EIPAR + YRS+ Sbjct: 537 EPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCIQEYRSDLTF 595 Query: 456 DTKGEGVMNHSFLEFRPFSG 475 T G V + +G Sbjct: 596 FTNGRSVCLTELKGYHVTTG 615
>PF07201#Hypersensitivity response secretion protein HrpJ Length = 293 Score = 29.4 bits (66), Expect = 0.025 Identities = 18/117 (15%), Positives = 36/117 (30%), Gaps = 21/117 (17%) Query: 242 SVTQKPNIIAPYSLYRLKEANNANEAQPSPY------ATQTAPENSKEKLIEELIANSQL 295 ++ P R + A++ Q + S + EE+ Sbjct: 3 TLHNLSYGNTPLHNERPEIASSQIVNQTLGQFRGESVQIVSGTLQSIADMAEEVTF---- 58 Query: 296 IANEEEREKKLLAEKEKQ--------ETELAKY--KLKDLENQKKLKALEAELKKKN 342 E +E L K E ++ +Y K+ +LE ++ + L + L Sbjct: 59 -VFSERKELSLDKRKLSDSQARVSDVEEQVNQYLSKVPELEQKQNVSELLSLLSNSP 114
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 41.6 bits (97), Expect = 4e-05 Identities = 39/230 (16%), Positives = 86/230 (37%), Gaps = 11/230 (4%) Query: 581 TPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKESVKAYLDC 640 P ++ + + ++KT + ++ T + ++ +EAK +VKA Sbjct: 1023 APVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQT 1082 Query: 641 VSQAKTEAEKKECEKLLTPEAKKLLEQQALDCLKNAKTEAERKRCVKDLPKDLQKKVL-- 698 A++ +E KE + T E + +++ KT+ K + PK Q + + Sbjct: 1083 NEVAQSGSETKETQTTETKETATVEKEEKAKVET-EKTQEVPKVTSQVSPKQEQSETVQP 1141 Query: 699 ----AKESVKAYL--DCVSQAKTEAEKKECEKLLTPEAKKLLEEAKESLKAYKDCVSRAR 752 A+E+ + SQ T A+ ++ K + ++ + E+ + V Sbjct: 1142 QAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTG--NSVVENP 1199 Query: 753 NEKEKKECEKLLTPEAKKLLEQEVKRSVKAYLDCVSQAKTEAEKKECEKL 802 + + E+ + +RSV++ V A T + + L Sbjct: 1200 ENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVAL 1249 Score = 37.4 bits (86), Expect = 7e-04 Identities = 40/253 (15%), Positives = 88/253 (34%), Gaps = 19/253 (7%) Query: 765 TPEAKKLLEQEVKRSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLEEAKESLKAYKDC 824 P + + + ++KT + ++ T + +++ +EAK ++KA Sbjct: 1023 APVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQT 1082 Query: 825 VSRARNEKEKQECEKLLTPEAKKLLEQEVKKSVKAYLDCVSQAKTEAEKKACEKLLTPEA 884 A++ E +E + T E + ++E +AK E EK +T + Sbjct: 1083 NEVAQSGSETKETQTTETKETATVEKEE-------------KAKVETEKTQEVPKVTSQV 1129 Query: 885 KKLLEQEVKKSVKAYLDCVSQAKTEAEKKACEKLLTPEAKKKLEEAKKSVKAYLDCVSRA 944 EQ +A + ++ + T + ++ +E +V+ + + Sbjct: 1130 SPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTV 1189 Query: 945 RNEKEKKECEKLLTPEAKKLLEQQALDCLKSAKTEAEKKRCVKDLPKDLQKKVLAKE--S 1002 E + TP + S K + +R V+ +P +++ + S Sbjct: 1190 NTGNSVVENPENTTPATTQPTVNSES----SNKPKNRHRRSVRSVPHNVEPATTSSNDRS 1245 Query: 1003 VKAYLDCVSRARN 1015 A D S N Sbjct: 1246 TVALCDLTSTNTN 1258 Score = 36.2 bits (83), Expect = 0.002 Identities = 29/187 (15%), Positives = 69/187 (36%), Gaps = 4/187 (2%) Query: 497 KARNEKEKKECEKLLTPEARKKLEQQVLDCLKNAKTDEERKKCLKDLPKD--LQSDILAK 554 + NE+ + E + P A + +N+K + + + + + Q+ +AK Sbjct: 1011 PSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAK 1070 Query: 555 ESVKAYKDCVSQAKTEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKE 614 E+ K + E ++ T E K+ E +E K + + + Sbjct: 1071 EAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVS 1130 Query: 615 CEKLLTPEAKKKLEEAKESVKAYL--DCVSQAKTEAEKKECEKLLTPEAKKLLEQQALDC 672 ++ + + + E A+E+ + SQ T A+ ++ K + ++ + + Sbjct: 1131 PKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVN 1190 Query: 673 LKNAKTE 679 N+ E Sbjct: 1191 TGNSVVE 1197 Score = 34.7 bits (79), Expect = 0.004 Identities = 36/174 (20%), Positives = 68/174 (39%), Gaps = 24/174 (13%) Query: 866 QAKTEAEKKACEKLLTPEAKKLLEQEVKKSVKAYLDCVSQAKTEAEKKACEKLLTPEAKK 925 + E + E + P A E ++V S+ + E+ A E T + ++ Sbjct: 1011 PSNNEEIARVDEAPVPPPAPAT-PSETTETVAENSKQESKTVEKNEQDATET--TAQNRE 1067 Query: 926 KLEEAKKSVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEQQALDCLKSAKTEAEKKRC 985 +EAK +VKA A++ E KE + T E + +++ AK E EK + Sbjct: 1068 VAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEE------KAKVETEKTQE 1121 Query: 986 VKDLPKDLQKKVLAKESVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEEAKE 1039 V KV ++ S K + ++E + + E + ++E + Sbjct: 1122 V--------PKVTSQVSPK-------QEQSETVQPQAEPARENDPTVNIKEPQS 1160 Score = 33.9 bits (77), Expect = 0.009 Identities = 35/263 (13%), Positives = 93/263 (35%), Gaps = 6/263 (2%) Query: 674 KNAKTEAERKRCVKDLP-KDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKK 732 + + E V + P ++ + + ++KT + ++ T + ++ Sbjct: 1008 PSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNRE 1067 Query: 733 LLEEAKESLKAYKDCVSRARNEKEKKECEKLLTPEAKKLLEQEVKRSVKAYLDCVSQAKT 792 + +EAK ++KA A++ E KE + T E K+ E + K + + Sbjct: 1068 VAKEAKSNVKANTQTNEVAQSGSETKETQ---TTETKETATVEKEEKAKVETEKTQEVPK 1124 Query: 793 EAEKKECEKLLTPEAKKLLEEAKESLKAY--KDCVSRARNEKEKQECEKLLTPEAKKLLE 850 + ++ + + E A+E+ K+ S+ + ++ K + ++ + Sbjct: 1125 VTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVT 1184 Query: 851 QEVKKSVKAYLDCVSQAKTEAEKKACEKLLTPEAKKLLEQEVKKSVKAYLDCVSQAKTEA 910 + + + + T A + + K + +SV ++ + + + Sbjct: 1185 ESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDR 1244 Query: 911 EKKACEKLLTPEAKKKLEEAKKS 933 A L + L +A+ Sbjct: 1245 STVALCDLTSTNTNAVLSDARAK 1267
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 863 bits (2230), Expect = 0.0 Identities = 511/522 (97%), Positives = 514/522 (98%), Gaps = 1/522 (0%) Query: 1 MEQAFFKKIVGCFCLGYLFLSSVIEAAP-DIKNFNRGRVKVVNKKIAYLGDEKPITIWTS 59 M QAFFKKIVGCFCLGYLFLSS IEA DIKNFNRGRVKVVNKKIAYLGDEKPITIWTS Sbjct: 1 MGQAFFKKIVGCFCLGYLFLSSAIEAVALDIKNFNRGRVKVVNKKIAYLGDEKPITIWTS 60 Query: 60 LDNVTVIQLEKDETISYITTGFNKGWSIMPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR 119 LDNVTVIQLEKDETISYITTGFNKGWSI+PNSNHIFIQPKSVKSNLMFEKEAVNFALMTR Sbjct: 61 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR 120 Query: 120 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQVQKAQKDKREKRKEERAKNRANL 179 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQ QKAQKDKREKRKEERAKNRANL Sbjct: 121 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL 180 Query: 180 ENLTNAMSNPQNLSNNKNLSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA 239 ENLTNAMSNPQNLSNNKNLSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA Sbjct: 181 ENLTNAMSNPQNLSNNKNLSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA 240 Query: 240 EETIKQRAKDKISIKTDKSQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD 299 EE ++QRAKDKISIKTDKSQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD Sbjct: 241 EEAVRQRAKDKISIKTDKSQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD 300 Query: 300 NFASAYLTVKLEYPQRHEVSSVIEGELKKREEAKRQRELIKQENLNTTAYINRVMMASNE 359 NFASAYLTVKLEYPQRHEVSSVIE ELKKREEAKRQRELIKQENLNTTAYINRVMMASNE Sbjct: 301 NFASAYLTVKLEYPQRHEVSSVIEEELKKREEAKRQRELIKQENLNTTAYINRVMMASNE 360 Query: 360 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF 419 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF Sbjct: 361 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF 420 Query: 420 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK 479 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK Sbjct: 421 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK 480 Query: 480 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK 521 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK Sbjct: 481 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK 522
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 119 bits (299), Expect = 5e-35 Identities = 44/205 (21%), Positives = 74/205 (36%), Gaps = 10/205 (4%) Query: 27 KLNKANRTFKRAFYL---SMALNVAAVTSIVMMMPLKKTDIFVYGIDRYTGEFKIVKRSD 83 KL A R+ K A+ + + AL A V ++ + PLK + +V +DR TGE I + Sbjct: 24 KLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIAAKLH 83 Query: 84 A-RQIVNSEAVVDSATSKFVSLLFGYSKNSLRDRKDQLMQYCDVSFQTQAMRMFNENIRQ 142 I EAV + +V G+ + + D +M Q + R + + Q Sbjct: 84 GDATITYDEAVRKYFLATYVRYREGWIAAAREEYFDAVMVMSARPEQDRWSRFYKTDNPQ 143 Query: 143 FVDKVRA-EAIISSNIQREKVKNSPLTRLTFFITIKITPDTMENYEYITKKQVTIYYDFA 201 + A + I + +F +T T TI Y Sbjct: 144 SPQNILANRTDVFVEI-KRVSFLGGNVAQVYFTKESVTGSNS----TKTDAVATIKYKVD 198 Query: 202 RGNSSQENLIINPFGFKVFDIQITD 226 S + + NP G++V + Sbjct: 199 GTPSKEVDRFKNPLGYQVESYRADV 223
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 33.6 bits (76), Expect = 9e-04 Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 16/119 (13%) Query: 24 AINTALLPSEYKELVALGFKKIKTLYQRHDDKEVTEEEKKFATNALREKLRNDRARAEQI 83 A+N AL+ +Y+E + K K + D KE+ E++K EK + + +A++ Sbjct: 112 AVNFALMTRDYQEFL----KTKKLIVDAPDPKELEEQKKAL------EKEKEAKEQAQKA 161 Query: 84 QKNIEAFEKKNNSSIQKKATKHKGLQELNETNANPLNGNPNSNSSTETKSNKDDNFDEM 142 QK+ K +++A L+ L +NP N + N N S K +++ D+M Sbjct: 162 QKD------KREKRKEERAKNRANLENLTNAMSNPQNLSNNKNLSELIKQQRENELDQM 214
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 32.9 bits (75), Expect = 0.008 Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 18/88 (20%) Query: 19 EVQKRQFQKIEELKADMQKGVNPFFKVLFDGGNRLFGFPETFIYSSI-------FILFVT 71 + K K+ EL+ +G+ +D F+ SI F + Sbjct: 301 DTAKAIKAKLAELQPFFPQGMK--VLYPYD--------TTPFVQLSIHEVVKTLFEAIML 350 Query: 72 IVLSVILF-QAYEPVLIVAIVIVLVALG 98 + L + LF Q LI I + +V LG Sbjct: 351 VFLVMYLFLQNMRATLIPTIAVPVVLLG 378
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 123 bits (310), Expect = 2e-36 Identities = 78/250 (31%), Positives = 111/250 (44%), Gaps = 11/250 (4%) Query: 5 GKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEEKGYKVAVIKFDA 64 GK ITGA++GIG +A+TLAS G + N E + + + L+ + D Sbjct: 8 GKIAFITGAAQGIGEAVARTLASQGAHI-AAVDYNPEKLEKVVSSLKAEARHAEAFPADV 66 Query: 65 TSESDFVEAIQTIVQSDGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCRE 124 + E I + G + LVN AGV+R L + E++ N T F R Sbjct: 67 RDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRS 126 Query: 125 ALKVMSKSRFGSVVNVASIIGERGNMGQTNYSASKGGMIAMSKSFAYEGALRNIRFNSVT 184 K M R GS+V V S Y++SK + +K E A NIR N V+ Sbjct: 127 VSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVS 186 Query: 185 PGFIETDMNANL--KDELKADYVK--------NIPLNRLGSAKEVAQAVAFLLSDHSSYI 234 PG ETDM +L + +K IPL +L ++A AV FL+S + +I Sbjct: 187 PGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHI 246 Query: 235 TGETLKVNGG 244 T L V+GG Sbjct: 247 TMHNLCVDGG 256
>adhesinb#Adhesin B signature. Length = 310 Score = 27.1 bits (60), Expect = 0.018 Identities = 12/42 (28%), Positives = 22/42 (52%) Query: 56 NIDFKLTEFDRDDKKYYNRIVFEFKYNLNEEDKQYLIEFVPI 97 NI +L+E D +K+ Y + + + L+ DK+ +F I Sbjct: 154 NIAKRLSEKDPANKETYEKNLKAYVEKLSALDKEAKEKFNNI 195
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 276 bits (707), Expect = 3e-96 Identities = 113/245 (46%), Positives = 161/245 (65%), Gaps = 2/245 (0%) Query: 1 MRFFIFFILICPLICPLMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLI 60 MR + + L A + LP + S P + + + +T L P+++ Sbjct: 1 MRRLLSVAPVL-LWLITPLAFAQLPGIT-SQPLPGGGQSWSLPVQTLVFITSLTFIPAIL 58 Query: 61 LVMTSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMD 120 L+MTSFTR+I+VF LR ALGT PP Q+L+ L+L LTFFIM P + K Y +P+ + Sbjct: 59 LMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSE 118 Query: 121 KKISYTEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKTPDEVSLSVLIPAFMISE 180 +KIS EA EK A P +EFML+ TRE DL LF R+ N + P+ V + +L+PA++ SE Sbjct: 119 EKISMQEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVTSE 178 Query: 181 LKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTEN 240 LKTAFQIGF +++PFL+ID+VI+S+LMA+GMMM+PP I+LPFK+++F+LVDG+ LL + Sbjct: 179 LKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGS 238 Query: 241 LVASF 245 L SF Sbjct: 239 LAQSF 243
>PF01206#SirA family protein Length = 76 Score = 25.1 bits (55), Expect = 0.018 Identities = 8/43 (18%), Positives = 20/43 (46%), Gaps = 7/43 (16%) Query: 43 IPNFETQQAMREALNGENLEVI-------EDFSAWANEREKEV 78 +P + ++ + GE L V+ +DF +++ + E+ Sbjct: 17 LPILKAKKTLATMNAGEVLYVMATDPGSVKDFESFSKQTGHEL 59
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 42.8 bits (101), Expect = 2e-06 Identities = 37/176 (21%), Positives = 65/176 (36%), Gaps = 12/176 (6%) Query: 211 AASIATLSNDERELGVACVDMGGETCNLTIYSGNSIRYNKYLPVGSHHLTTDL------S 264 AA+I G VD+GG T + + S N + Y+ + +G + + Sbjct: 146 AAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNGVVYSSSVRIGGDRFDEAIINYVRRN 205 Query: 265 HMLNTPFPYAEEVKIKYGDLSFESDAETPSQNVQIPTTGSDGNESHIVPLSEIQTIMRER 324 + AE +K + G S E V+ + +EI ++E Sbjct: 206 YGSLIGEATAERIKHEIG--SAYPGDEVREIEVRGRNLAEGVPRGFTLNSNEILEALQEP 263 Query: 325 ALETFKIIHRSIQDSGLE---EHLGGGIVLTGGMALMKGIKELARTHFTNYPVRLA 377 + +++ E + G+VLTGG AL++ + L T PV +A Sbjct: 264 LTGIVSAVMVALEQCPPELASDISERGMVLTGGGALLRNLDRLLM-EETGIPVVVA 318
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 33.2 bits (76), Expect = 0.002 Identities = 27/152 (17%), Positives = 56/152 (36%), Gaps = 23/152 (15%) Query: 165 FLLLVLAQIFLIGLILIIVLITLVETLTWLSLGFAVLPLALFPQTKGM-LFSYLKKLISL 223 + VL + F + L+ V + + GF + A+ P K + K++ S+ Sbjct: 75 VVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPDIKKINPIEGAKRIFSI 134 Query: 224 TFYQPCIMVVSFLNFSMIESITLKIPTRAEIINGFYNKGHIVDQMIENGSNQAINNFQNA 283 S + F ++SI LK+ I+ KG++V + Sbjct: 135 K---------SLVEF--LKSI-LKV-VLLSILIWIIIKGNLVTLLQLPTCG--------- 172 Query: 284 MGAYTSVLGFFIILILGSVICFFLIKRVPDFI 315 + T +LG + ++ F++ + D+ Sbjct: 173 IECITPLLGQILRQLMVICTVGFVVISIADYA 204
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 37.7 bits (87), Expect = 2e-04 Identities = 36/181 (19%), Positives = 68/181 (37%), Gaps = 6/181 (3%) Query: 474 KEQNKANENAQQETKNLQAQETTSSQAYESVSQANTQDTTQANGSIKPQTNNTAAQQENT 533 + EN++QE+K ++ E +++ + + ++N QTN A T Sbjct: 1035 ETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEA--KSNVKANTQTNEVAQSGSET 1092 Query: 534 KESQVTQQNSTIQAQKEPHAKEEPKKVSHPDEPWLDHDPKN---HAGLKERQENQEKTPS 590 KE+Q T+ T +KE AK E +K + PK + + +E P+ Sbjct: 1093 KETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPT 1152 Query: 591 KGNDEPWIEHGKRM-QEKAKAHYQACLEKERAKQNQQNTQNTIENQNKEVPTIDYGYTQN 649 EP + E+ + +E+ + NT N++ + T N Sbjct: 1153 VNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVN 1212 Query: 650 T 650 + Sbjct: 1213 S 1213 Score = 32.7 bits (74), Expect = 0.006 Identities = 23/153 (15%), Positives = 53/153 (34%), Gaps = 2/153 (1%) Query: 173 SAKLEQQELEREEA-ELESKALQDYEENQIKRAEEISLTEHENELAKQELERYAIEGENK 231 + ++ Q E +E E+K E+ + + E E ++ ++ E Sbjct: 1082 TNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQP 1141 Query: 232 SLEQYDENLELLESLQIIRDETNEVANSLRANETIELLRPTGENTTSKIVSLALEENNKL 291 E EN + +++ + +TN A++ + + ++ + + N Sbjct: 1142 QAEPAREN-DPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPE 1200 Query: 292 NEKETNTQEQNTEKEQEKPKIGNDIDLKDKYAN 324 N TQ + KPK + ++ N Sbjct: 1201 NTTPATTQPTVNSESSNKPKNRHRRSVRSVPHN 1233
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 29.4 bits (66), Expect = 0.021 Identities = 8/61 (13%), Positives = 21/61 (34%), Gaps = 9/61 (14%) Query: 106 KASIAYIRD--------YEMRYVKARDEQGNLIPLKDKEGNLKHYSNG-EVIYENEKVPQ 156 + I ++ Y RY +++ ++ +G +H G V+ + + Sbjct: 236 SSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHAPTGTPVLVDGVRTMT 295 Query: 157 R 157 Sbjct: 296 V 296
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 32.1 bits (73), Expect = 0.033 Identities = 46/232 (19%), Positives = 89/232 (38%), Gaps = 27/232 (11%) Query: 1278 YKIIKDFMDKVGENNINLNEQTLNEYFIH-HPENILGRLSLEKTRY---SSEINGEQIYK 1333 ++ KD ++ N N T N F+ + N++ + +K +Y S + K Sbjct: 232 VEVCKDLFKEIQSNKFEFNCYTKNNSFVGFYCLNLMSKEDYKKIQYDSSSKLLENFYYAK 291 Query: 1334 YELQALEDESLDLSQALSQAIEKLPKDVYQYHKTTLKTDALIIDPSNERYQEVQKLIK-- 1391 + L+ +S DL + + I + K + T K + + ++ +L+ Sbjct: 292 DKSDRLKSKSSDLQKIVMNNINRCTKKDKILNNTLKKCEDK------DIFKLYGELLTAN 345 Query: 1392 --NLERG-ELVKWDNLYYKLEQDNEIGIFLRPTKINSKAQDSRLKAYLKIKDALNGL--- 1445 L++G ++ N Y E + + I L K S+ S K Y K+K + Sbjct: 346 IYALKKGLSHIELANYYS--ENYDTVKITLDENKTPSQNVQSYYKKYNKLKKSEEAANEQ 403 Query: 1446 ---TSAELNPLSS---DLELENKRAKLNLVYDEFVKKFGYLNENKNRKDIKQ 1491 ELN L S ++ + ++ + E ++ GY+ K K K Sbjct: 404 LLQNEEELNYLYSVLTNINNADNYDEIEEIKKELIET-GYIKFKKIYKSKKS 454
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 35.1 bits (80), Expect = 0.001 Identities = 36/216 (16%), Positives = 74/216 (34%), Gaps = 26/216 (12%) Query: 527 EDAEIVSKEVGEFTRQSKNYSTEKGQLV---------FGGSSSYSHEGRNLLTAQDIMNI 577 ++AE K E ++ K EK + ++ S E + + AQ ++ Sbjct: 141 KEAEAAEKAFQEAEQRRKEIEREKAETERQLKLAEAEEKRLAALSEEAKAVEIAQKKLSA 200 Query: 578 NSDEVIVIVTGAKATPLKLKANYWFKDKELLKRANLPIDLEVERQRVEE----------- 626 EV+ + K +L ++ +D E+ A +L + +E Sbjct: 201 AQSEVVKMDGEIKTLNSRLSSSIHARDAEMKTLAGKRNELAQASAKYKELDELVKKLSPR 260 Query: 627 ---PIQPTTEIETTPNQNKADLEPSNKGEKVENESNERNTNENNPTTPQELENSNLKESE 683 P+Q E T + A K ++V N + T Q + + S Sbjct: 261 ANDPLQNRPFFEATRRRVGAGKIREEKQKQVTASETRINRINADITQIQ---KAISQVSN 317 Query: 684 KDSESPITLENANENIEQGNHNEIDEILKKPLSEIS 719 + + A EN+++ +N ++ +K + Sbjct: 318 NRNAGIARVHEAEENLKKAQNNLLNSQIKDAVDATV 353
>cloacin#Cloacin signature. Length = 551 Score = 38.5 bits (89), Expect = 9e-05 Identities = 31/114 (27%), Positives = 46/114 (40%), Gaps = 12/114 (10%) Query: 140 SGASGMGYASGYGDTSNN-------AGSNGTSANGVNGTSGNNGAKGENGSSGANGANGT 192 SG G G+ +G TS N G G +++G +S NN G +GS G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 193 SGYQGVGSNPFPPIAGSGNGSSGSSNSGYTPFMSGGGGIGGMGGGFIPFPYSPG 246 G G N +G G+G+ G+ ++ P G + G G + S G Sbjct: 62 HGNGGGNGN-----SGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110 Score = 37.4 bits (86), Expect = 2e-04 Identities = 23/87 (26%), Positives = 32/87 (36%), Gaps = 3/87 (3%) Query: 134 GKGFSGSGASGMGYASGYGDTSNNAGSNGTSANGVNGTSGNNGAKGENGSSGANGANGTS 193 G G G + G G++S + GS G GN G G +G G N ++ Sbjct: 26 GLGVGGGASDGSGWSSE--NNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSA 83 Query: 194 GYQGVGSNPFPPIAGSGNGSSGSSNSG 220 V FP ++ G G S S Sbjct: 84 VAAPVAFG-FPALSTPGAGGLAVSISA 109 Score = 34.3 bits (78), Expect = 0.002 Identities = 26/91 (28%), Positives = 35/91 (38%), Gaps = 7/91 (7%) Query: 184 SGANGANGTSGYQGVGSNPFPPIAGSGNGSSGSSNSGYTPFMSGGGGIGGMGGGFIPFPY 243 SG +G +G N G G G S SG++ + GG G G + Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHW----- 56 Query: 244 SPGLQNGSGANGINGTNGIDGTSGANGSNSA 274 G +G G G NG +G +G N S A Sbjct: 57 --GGGSGHGNGGGNGNSGGGSGTGGNLSAVA 85 Score = 32.0 bits (72), Expect = 0.010 Identities = 25/89 (28%), Positives = 34/89 (38%), Gaps = 7/89 (7%) Query: 193 SGYQGVGSNPFPPIAGSGNGSSGSSNSGYTPFMSGGGGIGGMGGGFIPFPYSPGLQNGSG 252 SG G G N + +SG+ N G T GGG G G P+ G +G Sbjct: 2 SGGDGRGHN------TGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIH 55 Query: 253 ANGINGT-NGIDGTSGANGSNSANGGTAS 280 G +G NG + GS + +A Sbjct: 56 WGGGSGHGNGGGNGNSGGGSGTGGNLSAV 84
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 88.7 bits (220), Expect = 9e-23 Identities = 34/224 (15%), Positives = 73/224 (32%), Gaps = 29/224 (12%) Query: 121 ESFKKDELDLSSVFEIQRKNTQIAYRLAIGGLIGIIALSIAIFIMMPLKENTPYFIDFAN 180 F++ ++ ++A+ +A A +A+ + PLK PY I Sbjct: 12 AYFEEAASWERDKLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDR 71 Query: 181 SDKHFAVVQRADTKVDYS--EAFLRNLVGSYITARETINHIDDKIRLNETIREQSSEEVW 238 + ++ + + EA + + +Y+ RE + + + S+ Sbjct: 72 NTGEASIAAKLHGDATITYDEAVRKYFLATYVRYREGWIAAAREEYF-DAVMVMSARPEQ 130 Query: 239 KTLEQLVSGKG-----SIYSNSNMDREIKIINISIYKQGKQQNIAVADIVAKVFDKGYLI 293 + +I +N D ++I +S + VA+V+ + Sbjct: 131 DRWSRFYKTDNPQSPQNILANRT-DVFVEIKRVSF----------LGGNVAQVYFTKESV 179 Query: 294 SEKRYRVSLIYHFKPLIQFDYSSMP-------KNPTGFIVDKYS 330 + S I++ P KNP G+ V+ Y Sbjct: 180 TGSN---STKTDAVATIKYKVDGTPSKEVDRFKNPLGYQVESYR 220
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 29.3 bits (65), Expect = 0.011 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 9/63 (14%) Query: 50 YNRVDDEPILNHERFMQPDYVLVIDPGLVFIENIFANEKEDTTYIITSYLNKEELFEKKP 109 ++R ++P E F P+ + + N+ A+EK D ++++ L+ E FEK P Sbjct: 293 HSRSGEQPKGFTESFKAPE---------LGVGNLGASEKSDVFLVVSTLLHCIEGFEKNP 343 Query: 110 ELK 112 E+K Sbjct: 344 EIK 346
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 565 bits (1457), Expect = 0.0 Identities = 129/610 (21%), Positives = 229/610 (37%), Gaps = 75/610 (12%) Query: 6 SSLNTSYTGLQAHQSMVDVTGNNISNASDEFYSRQRVIAKPQAAYMYGTKNVNMGVDVEA 65 S +N + +GL A Q+ ++ NNIS+ + Y+RQ I + + V GV V Sbjct: 2 SLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVSG 61 Query: 66 IERVHDEFVFARYTKANYENTYYDTEFSHLKEASAYFPDIDEASLFTDLQDYFNSWKELS 125 ++R +D F+ + A +++ + + + +SL T +QD+F S + L Sbjct: 62 VQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNML-STSTSSLATQMQDFFTSLQTLV 120 Query: 126 KNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIAEINK 185 NA+D A +QAL K+E L + K T + L + + + + + ++N+ QIA +N Sbjct: 121 SNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASLND 180 Query: 186 RIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTHSLTDKDSADFDESYNL 245 +I + + N L D+RD+L L +++G V S +YN+ Sbjct: 181 QISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEV--------------SVQDGGTYNI 226 Query: 246 NIGHGFNIIDGSIFHPLVVKESENKGGLNQVYFQSDDFKLTNITDK-LNQGKVGALLNVY 304 + +G++++ GS L S V + I +K LN G +G +L Sbjct: 227 TMANGYSLVQGSTARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFR 286 Query: 305 NDGSNGTLRGKLQDYIDLLDSFARGLIESTNAIYAQSASHHIEGEPVEFNSDEAFKDTNY 364 + L + L A E+ N + +A D N Sbjct: 287 SQ--------DLDQTRNTLGQLALAFAEAFNTQH------------------KAGFDANG 320 Query: 365 NIKNGSFDL----IAYNTDGKEIARKTIAITPITTMNDIIQAINANTDDNQ-----DNNT 415 + F + + NT K +T + + I+ + + Q N T Sbjct: 321 DAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVLATDYKISFDNNQWQVTRLASNTT 380 Query: 416 ENDFDDYFTASFNNETKKFVIQPKNASQGLFVSMKDNGTNFMGALKLNPFFQGDDASNIS 475 D + + + + + M L D + I+ Sbjct: 381 FTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSDAIVNMDVLI-------TDEAKIA 433 Query: 476 LNKEYKKEPTTIRPWLAPINGNFDVANMMQQLQYDSVDFYNDKFDIKPMKISEFYQFLTG 535 + E E G+ D N L S N K ++ Y L Sbjct: 434 MASE---EDA----------GDSDNRNGQALLDLQS----NSKTVGGAKSFNDAYASLVS 476 Query: 536 KINTDAEKSGRILDTKQSMLETIKKEQLSISQVSVDEEMLNLIKFQSGYAANAKVITAID 595 I T+ +++ + +Q SIS V++DEE NL +FQ Y ANA+V+ + Sbjct: 477 DIGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTAN 536 Query: 596 RMIDTLLGIK 605 + D L+ I+ Sbjct: 537 AIFDALINIR 546
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 147 bits (372), Expect = 1e-45 Identities = 48/169 (28%), Positives = 75/169 (44%), Gaps = 24/169 (14%) Query: 22 KMDNKTVAGDVSAKTVQTAPV-TTEPAPEKEEPKQEPAPVVEEKPAIESGTIIASIYFDF 80 + DN ++ VS + Q PAP PAP V+ K T+ + + F+F Sbjct: 177 RPDNGMLSLGVSYRFGQGEAAPVVAPAPA-------PAPEVQTK----HFTLKSDVLFNF 225 Query: 81 DKYEIKESDQETLDEIVQKAKE---NHMQVLLEGNTDEFGSSEYNQALGVKRTLSVKNAL 137 +K +K Q LD++ + V++ G TD GS YNQ L +R SV + L Sbjct: 226 NKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSVVDYL 285 Query: 138 VIKGVEKDMIKTISFGETKPKCVQ-----KTR----ECYRENRRVDVKL 177 + KG+ D I GE+ P K R +C +RRV++++ Sbjct: 286 ISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEV 334
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 30.2 bits (68), Expect = 0.021 Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 5/72 (6%) Query: 147 NEQISIANILSDVDHYLYTLDALILKKESVKKALSFELLSQRKRLKGFNQNWQRVRLGDI 206 N+QI+ + L+A I+ + K F ++ R N + VRL D+ Sbjct: 211 NDQIAAGQLGGTPALPGQQLNASIIAQTRFKNPEEFGKVTLRV-----NSDGSVVRLKDV 265 Query: 207 AEIKRGASPRPI 218 A ++ G + Sbjct: 266 ARVELGGENYNV 277
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 35.6 bits (82), Expect = 4e-04 Identities = 9/51 (17%), Positives = 24/51 (47%), Gaps = 4/51 (7%) Query: 127 TVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALEKHKKVVLV 177 +Y + ++ Q+D ++ G +G GK + A+ ++ ++ V + Sbjct: 148 EIYRVLARLMQTDLT----LMITGESGTGKELVARALHDYGKRRNGPFVAI 194
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 223 bits (569), Expect = 4e-78 Identities = 64/148 (43%), Positives = 94/148 (63%) Query: 4 IGIYPGTFDPVTNGHIDIIHRSSELFEKLIVAVAHSSAKNPMFSLKERLEMMQLATKSFK 63 IYPG+FDP+T GH+DII R LF+++ VAV + K PMFS++ERLE + A Sbjct: 2 NAIYPGSFDPITFGHLDIIERGCRLFDQVYVAVLRNPNKQPMFSVQERLEQIAKAIAHLP 61 Query: 64 NVECVAFEGLLANLAKEYHCKVLVRGLRVVSDFEYELQMGYANKSLNHELETLYFMPTLQ 123 N + +FEGL N A++ ++RGLRV+SDFE ELQM NK+L +LET++ + + Sbjct: 62 NAQVDSFEGLTVNYARQRQAGAILRGLRVLSDFELELQMANTNKTLASDLETVFLTTSTE 121 Query: 124 NAFISSSIVRSIIAHKGDASHLVPKEIH 151 +F+SSS+V+ + G+ H VP + Sbjct: 122 YSFLSSSLVKEVARFGGNVEHFVPSHVA 149
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 131 bits (332), Expect = 4e-40 Identities = 35/202 (17%), Positives = 71/202 (35%), Gaps = 4/202 (1%) Query: 40 QSVFRLERNRLKIAYRLLGLMSFIVLVLAIVLISILPLQKTEHHF--VDFLNQDKHYAII 97 + K+A+ + G+ + + + ++ PL+ E + VD + A Sbjct: 22 RDKLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIAAK 81 Query: 98 QRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKAQN 157 D +I+ +EA+ + + YV RE + ++ V + S+ R+ K N Sbjct: 82 LHGDATITYDEAVRKYFLATYVRYREGWIAAAREEYFDAVMVMSARPEQDRWSRFYKTDN 141 Query: 158 SIYAQSHLEREVHI-VNIAIYQQDNNPIASVSIAAKLLNENKLVYEKRYKIVLSYLFDAP 216 Q+ L + V I +A V + + + + + Y D Sbjct: 142 PQSPQNILANRTDVFVEIKRVSFLGGNVAQVYFTKESVTGSNST-KTDAVATIKYKVDGT 200 Query: 217 DFDYASMPKNPTGFKITRYSIT 238 KNP G+++ Y Sbjct: 201 PSKEVDRFKNPLGYQVESYRAD 222
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 31.3 bits (70), Expect = 0.006 Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 25/115 (21%) Query: 155 FIEDKNYYTNAFIKPQKENQENMTENAPKDAQKNNKPLKEEKEETKTPEEEVIIIGDNTN 214 I+ +N T A+I N A + N + ++EEK++ II D Sbjct: 339 LIKQENLNTTAYI--------NRVMMASNEQIINKEKIREEKQK---------IILDQAK 381 Query: 215 AMKIIKKDIQKGYKALKSSQ--RKWYCLWACSKKSKLSLMPKEIFNDKQFTYFKF 267 A+ + Q + ALK + R + A K+SK +MP EIF+D FTYF F Sbjct: 382 AL-----ETQYVHNALKRNPVPRNYNYYQAPEKRSK-HIMPSEIFDDGTFTYFGF 430
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 87.9 bits (218), Expect = 2e-21 Identities = 46/180 (25%), Positives = 72/180 (40%), Gaps = 19/180 (10%) Query: 7 LITGVTGQDGSYLAEYLLNLGYEVHGLKRRSSSINTSRIDHLYEDLHSEHKRRFFLHYGD 66 L+TG G G ++++ LL G++V G+ + + S E L F H D Sbjct: 4 LVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQP---GFQFHKID 60 Query: 67 MTDSSNLIHLIATTKPTEIYNLAAQSHVKVSFETPEYTANADGIGTLRILEAMRILGLEK 126 + D + L A+ ++ + V+ S E P A+++ G L ILE R ++ Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQ- 119 Query: 127 KTRFYQASTSELYGEVLETPQNENTPF-------NPRSPYAVAKMYAFYITKNYREAYNL 179 AS+S +YG N PF +P S YA K + Y Y L Sbjct: 120 --HLLYASSSSVYGL------NRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGL 171
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 48.6 bits (116), Expect = 1e-08 Identities = 51/346 (14%), Positives = 107/346 (30%), Gaps = 54/346 (15%) Query: 5 ILITGAYGMVGQNTALYFKKNKPDV-----------TLLTPKKSELY-----------LL 42 L+TGA G +G + + + V L + EL L Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDLA 62 Query: 43 DKDNVQAYLKEYKPTGIIHCAGRVGGIVANMNDLSTYMVENLLMGLYLFSSALDLGVKKA 102 D++ + + R + ++ + Y NL L + ++ Sbjct: 63 DREGMTDLFASGHFERVFISPHR-LAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 103 INLASSCAYPKYAPNPLKESDLLNGSLEPTNEGYALAKLSVMKYCEYVSAEKGVFYKTLV 162 + +SS Y P D ++ + YA K + S G+ L Sbjct: 122 LYASSSSVYGLNRKMPFSTDDSVDHPVSL----YAATKKANELMAHTYSHLYGLPATGLR 177 Query: 163 PCNLYGEFDKFEEKIAHMIPGLIARMHTAKLKNEKNFAMWGDGTARREYLNAKDLARFIA 222 +YG + + P + T + K+ ++ G +R++ D+A I Sbjct: 178 FFTVYGPWGR---------PDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAII 228 Query: 223 LAYENIAQIPS-----------------VMNVGSGVDYSIEEYYKMVAQVLDYKGVFVKD 265 + I + V N+G+ + +Y + + L + Sbjct: 229 RLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNML 288 Query: 266 LSKPVGMQQKLMDISK-QKALKWELEIPLEQGIKEAYEYYLKLLEV 310 +P + + D + + + E ++ G+K +Y +V Sbjct: 289 PLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDFYKV 334
>FLAGELLIN#Flagellin signature. Length = 507 Score = 284 bits (727), Expect = 5e-92 Identities = 130/519 (25%), Positives = 221/519 (42%), Gaps = 18/519 (3%) Query: 2 SFRINTNIAALTSHAVGVQNNRDLSSSLEKLSSGLRINKAADDSSGMAIADSLRSQSANL 61 + INTN +L + ++ LSS++E+LSSGLRIN A DD++G AIA+ S L Sbjct: 1 AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60 Query: 62 GQAIRNANDAIGMVQTADKAMDEQIKILDTIKTKAVQAAQDGQTLESRRALQSDIQRLLE 121 QA RNAND I + QT + A++E L ++ +VQA + +++Q +IQ+ LE Sbjct: 61 TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120 Query: 122 ELDNIANTTSFNGQQMLSGSFSNKEFQIGAYSNTTVKASIGSTSSDKIGHVRMETSSFSG 181 E+D ++N T FNG ++LS + Q+GA T+ + +G + Sbjct: 121 EIDRVSNQTQFNGVKVLSQDN-QMKIQVGANDGETITIDLQKIDVKSLGLDGFNVN---- 175 Query: 182 AGMLASAAAQNLTEVGLNFKQVNGVNDYKIETVRISTSAGTGIGALSEIINRFSNTLGVR 241 + ++ +FK V G + Y + + +G + + V Sbjct: 176 -----GPKEATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVN 230 Query: 242 ASYNVMATG----GTPVQSGTVRELTINGVEIGTVNDVHKNDADGRLTNAINSVKDRTGV 297 A+ + T T V + T E + K +G T V Sbjct: 231 AANGQLTTDDAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGD-TFDYKGVTFTIDT 289 Query: 298 EASMDIQGRINLHSIDGRAISVHAASASGQVFGGGNFAGISGTQHAVIGRLTLTRTDARD 357 + D G+++ +I+G +++ A + S D + Sbjct: 290 KTGNDGNGKVST-TINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKT 348 Query: 358 IIVSGVNFSHVGFHSAQGVAEYTVNLRAVRGIFDANVASAAGANANGAQAETNSQGIGAG 417 S ++ +G ++ TVN + + AG + + + Sbjct: 349 KNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINE 408 Query: 418 --VTSLKGAMIVMDMADSARTQLDKIRSDMGSVQMELVTTINNISVTQVNVKAAESQIRD 475 + K + DSA +++D +RS +G++Q + I N+ T N+ +A S+I D Sbjct: 409 DAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIED 468 Query: 476 VDFAEESANFSKYNILAQSGSFAMAQANAVQQNVLRLLQ 514 D+A E +N SK IL Q+G+ +AQAN V QNVL LL+ Sbjct: 469 ADYATEVSNMSKAQILQQAGTSVLAQANQVPQNVLSLLR 507
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 29.8 bits (67), Expect = 0.046 Identities = 14/29 (48%), Positives = 17/29 (58%) Query: 225 QEIKNELEKESYIISSIVKKSKKSPTPPP 253 +EIK EL + YI + KSKKS T P Sbjct: 431 EEIKKELIETGYIKFKKIYKSKKSKTSKP 459
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.8 bits (69), Expect = 0.012 Identities = 30/188 (15%), Positives = 60/188 (31%), Gaps = 15/188 (7%) Query: 145 QERQKTEQERQKTNKSEIELEQERQKTNKSGIELANSQI--------KAEQERQKTEQEK 196 ++R +T T + I+ + +N I + +E E K Sbjct: 986 EKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSK 1045 Query: 197 QKANKSEIELEQQKQKTINTQRDLIKEQKDFIKETEQNCQEKHGQLFIKKARIKTGITTG 256 Q++ E + + T + + + + T+ N + G + +T T Sbjct: 1046 QESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETAT 1105 Query: 257 IAIE----IEAECKTPKPAKTNQTPIQPKHLPNSKQPRSQRGSKAQELVAYLQKELESLP 312 + E +E E P T+Q PK S+ + Q + KE +S Sbjct: 1106 VEKEEKAKVETEKTQEVPKVTSQVS--PKQ-EQSETVQPQAEPARENDPTVNIKEPQSQT 1162 Query: 313 YSQKAIAK 320 + + Sbjct: 1163 NTTADTEQ 1170
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 294 bits (753), Expect = 7e-92 Identities = 104/454 (22%), Positives = 184/454 (40%), Gaps = 71/454 (15%) Query: 388 DLEHMNSFKEGEILVTDN-TDPDWEPCMKK-ASAVITNRGGRTCHAAIVAREIGVPAIVG 445 + + + E +++ ++ T D K+ T+ GGRT H+AI++R + +PA+VG Sbjct: 146 ETGSLATIAEETVIIAEDLTPSDTAQLNKQFVKGFATDIGGRTSHSAIMSRSLEIPAVVG 205 Query: 446 VSGATDSLYTGMEITVSCAEGE---------EGYVYAGIYEHEIERVELSNMQETQT--- 493 T+ + G + V EG E ++ E + + + Sbjct: 206 TKEVTEKIQHGDMVIVDGIEGIVIVNPTEEEVKAYEEKRAAFEKQKQEWAKLVGEPSTTK 265 Query: 494 -----KIYINIGNPEKAFSFSQLPNHGVGLARMEMIILNQIKAHPLALVDLHHKKSVKEK 548 ++ NIG P+ G+GL R E + +++ + P Sbjct: 266 DGAHVELAANIGTPKDVDGVLANGGEGIGLYRTEFLYMDRDQ-LPTE------------- 311 Query: 549 NEIENLMAGYANPKDFFVKKIAEGIGMISAAFYPKPVIVRTSDFKSNEYMRMLGGSSYEP 608 E Y K++ + KPV++RT D ++ + L P Sbjct: 312 ---EEQFEAY--------KEVVQ-------RMDGKPVVIRTLDIGGDKELSYL----QLP 349 Query: 609 NEENPMLGYRGASRYYSESYNEAFSWECEALALVREEMGLTNMKVMIPFLRTIEEGKKVL 668 E NP LG+R + F + AL N+KVM P + T+EE ++ Sbjct: 350 KELNPFLGFRAIRLCLE--KQDIFRTQLRALL---RASTYGNLKVMFPMIATLEELRQAK 404 Query: 669 EILRKNNLESGKNG------LEIYIMCELPVNVILADDFLSLFDGFSIGSNDLTQLTLGV 722 I+++ + G +E+ IM E+P + A+ F D FSIG+NDL Q T+ Sbjct: 405 AIMQEEKDKLLSEGVDVSDSIEVGIMVEIPSTAVAANLFAKEVDFFSIGTNDLIQYTMAA 464 Query: 723 DRDSELVSHVFDERNEAMLKMFKKAIEACKRHNKYCGICGQAPSDYPEVTEFLVKEGITS 782 DR +E VS+++ + A+L++ I+A K+ G+CG+ D L+ G+ Sbjct: 465 DRMNERVSYLYQPYHPAILRLVDMVIKAAHSEGKWVGMCGEMAGD-EVAIPLLLGLGLDE 523 Query: 783 ISLNPDSVIPTWNAVAKLE----KELKDHGLTAR 812 S++ S++P + + KL K L Sbjct: 524 FSMSATSILPARSQLLKLSKEELKPFAQKALMLD 557
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 149 bits (377), Expect = 3e-49 Identities = 39/140 (27%), Positives = 74/140 (52%), Gaps = 1/140 (0%) Query: 5 EILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEEFADMFDDLAERIAQLGHH 64 L ++ +L+ K+H FHW VKG FF +H+ EE+Y+ A+ D +AER+ +G Sbjct: 15 NSLNTQLSNWFLLYSKLHRFHWYVKGPHFFTLHEKFEELYDHAAETVDTIAERLLAIGGQ 74 Query: 65 PLVTLSEALKLTRVKEETKTSFHSKDIFKEILGDYKHLEKEFKELSNTAEKEGDKVTVTY 124 P+ T+ E + + + + + ++ + ++ DYK + E K + AE+ D T Sbjct: 75 PVATVKEYTEHASITDGGNET-SASEMVQALVNDYKQISSESKFVIGLAEENQDNATADL 133 Query: 125 ADDQLAKLQKSIWMLEAHLA 144 + +++K +WML ++L Sbjct: 134 FVGLIEEVEKQVWMLSSYLG 153
>PF06580#Sensor histidine kinase Length = 349 Score = 30.2 bits (68), Expect = 0.014 Identities = 10/71 (14%), Positives = 25/71 (35%), Gaps = 13/71 (18%) Query: 286 IVLQNFLYNAIDAIEALEESEQ-GQVKIEAFIQNEFIVFTIIDNGKEVENKSALFEPFET 344 +++Q + N I + + Q G++ ++ N + + + G + Sbjct: 258 MLVQTLVENGI--KHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTK------- 308 Query: 345 TKLKGNGLGLA 355 + G GL Sbjct: 309 ---ESTGTGLQ 316
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 365 bits (937), Expect = e-128 Identities = 120/345 (34%), Positives = 192/345 (55%), Gaps = 26/345 (7%) Query: 19 AEKIGDIASVVGVRDNQLIGYGLVIGLNGTGDK-SGSKFTMQSISNMLESVNVKISADDI 77 +I DIAS+ RDNQLIGYGLV+GL GTGD S FT QS+ ML+++ + Sbjct: 28 TSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDSLRSSPFTEQSMRAMLQNLGITTQGGQS 87 Query: 78 KSKNVAAVMITASLPPFARQGDKIDIHVSSIGDAKSIQGGTLVMTPLNAVDGNIYALAQG 137 +KN+AAVM+TA+LPPFA G ++D+ VSS+GDA S++GG L+MT L+ DG IYA+AQG Sbjct: 88 NAKNIAAVMVTANLPPFASPGSRVDVTVSSLGDATSLRGGNLIMTSLSGADGQIYAVAQG 147 Query: 138 AIISGNSS-----------NLLSANIINGATIEREVSYDLFHKNAMTLSLKNPNFKNAIQ 186 A+I S SA + NGA IERE+ + L L+NP+F A++ Sbjct: 148 ALIVNGFSAQGDAATLTQGVTTSARVPNGAIIERELPSKFKDSVNLVLQLRNPDFSTAVR 207 Query: 187 VQNTLNKV----FGNKVAIALDPKTIQITRPERLSMVEFLALVQEIPINYSAKNKIIVDE 242 V + +N +G+ +A D + I + +P + +A ++ + + K++++E Sbjct: 208 VADVVNAFARARYGDPIAEPRDSQEIAVQKPRVADLTRLMAEIENLTVETDTPAKVVINE 267 Query: 243 KSGTIVSGVDIIVHPIVVTSQDITLKITKEP--------LNDSKNTQDLDNNMSLDTAHN 294 ++GTIV G D+ + + V+ +T+++T+ P Q + M++ Sbjct: 268 RTGTIVIGADVRISRVAVSYGTLTVQVTESPQVIQPAPFSRGQTAVQPQTDIMAMQEGSK 327 Query: 295 TLSSNGKNITIAGVVKALQKIGVSAKGMVSILQALKKSGAISAEM 339 G ++ +V L IG+ A G+++ILQ +K +GA+ AE+ Sbjct: 328 VAIVEGPDLR--TLVAGLNSIGLKADGIIAILQGIKSAGALQAEL 370
>SECA#SecA protein signature. Length = 901 Score = 29.8 bits (67), Expect = 0.028 Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 2/63 (3%) Query: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRFSIMAFKKNDADVLVATDVASRG 320 +V T + ++++ + L K L+ + A V +AT++A RG Sbjct: 453 LVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPAA--VTIATNMAGRG 510 Query: 321 LDI 323 DI Sbjct: 511 TDI 513
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 32.5 bits (74), Expect = 0.004 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 7/50 (14%) Query: 30 VAIVGESGSGKSSIANLIMRLNPR----FKPHNGEVLFETTNLLKESEAF 75 + I GESG+GK +A + R F N + L ESE F Sbjct: 163 LMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRD---LIESELF 209
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 114 bits (287), Expect = 8e-29 Identities = 54/162 (33%), Positives = 89/162 (54%), Gaps = 7/162 (4%) Query: 3 NIRNFSIIAHIDHGKSTLADCLISECNAIS---NREMTSQVMDTMDIEKERGITIKAQSV 59 I N ++AH+D GK+TL + L+ AI+ + + + D +E++RGITI+ Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 60 RLNYTFKGEDYVLNLIDTPGHVDFSYEVSRSLCSCEGALLVVDATQGVEAQTIANTYIAL 119 +F+ E+ +N+IDTPGH+DF EV RSL +GA+L++ A GV+AQT + Sbjct: 62 ----SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALR 117 Query: 120 DNNLEILPVINKIDLPNANVLEVKQDIEDTIGIDCSNANEVS 161 + + INKID ++ V QDI++ + + +V Sbjct: 118 KMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVE 159 Score = 82.2 bits (203), Expect = 1e-18 Identities = 50/215 (23%), Positives = 90/215 (41%), Gaps = 17/215 (7%) Query: 161 SAKAKLGIKDLLEKIITTIPAPSGDPNAPLKALIYDSWFDNYLGALALVRIMDGSINTEQ 220 SAK +GI +L+E I + + + L ++ + LA +R+ G ++ Sbjct: 220 SAKNNIGIDNLIEVITNKFYSSTHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRD 279 Query: 221 EILVMGTGKKHGVLGLYYPNPLKKIPTKSLECGEIGIV---SLGLKSVTDIAVGDTLTDA 277 + + K + +Y + GEI I+ L L SV +GDT Sbjct: 280 SVRISEKEKI-KITEMYTSINGELCKIDKAYSGEIVILQNEFLKLNSV----LGDTKLL- 333 Query: 278 KNPTPKPIEGFIPAKPFVFAGLYPIETDRFEDLREALLKLQLNDCALNFEPESSVALGFG 337 P + IE P + + P + + E L +ALL++ +D L + +S+ Sbjct: 334 --PQRERIEN---PLPLLQTTVEPSKPQQREMLLDALLEISDSDPLLRYYVDSATH---E 385 Query: 338 FRVGFLGLLHMEVIKERLEREFSLNLIATAPTVVY 372 + FLG + MEV L+ ++ + + PTV+Y Sbjct: 386 IILSFLGKVQMEVTCALLQEKYHVEIEIKEPTVIY 420 Score = 31.0 bits (70), Expect = 0.015 Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 2/75 (2%) Query: 399 IKEPFVRATIITPSEFLGNLMQLLNNKRGIQEKMEYLNQSRVMLTYSLPSNEIVMDFYDK 458 + EP++ I P E+L + L + V+L+ +P+ I ++ Sbjct: 535 LLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCI-QEYRSD 592 Query: 459 LKSCTKGYASFDYEP 473 L T G + E Sbjct: 593 LTFFTNGRSVCLTEL 607
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 30.3 bits (68), Expect = 0.009 Identities = 9/40 (22%), Positives = 16/40 (40%) Query: 3 NGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITG 42 + A + L+ SNN+++ N G+ R I Sbjct: 2 SLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMA 41
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 40.6 bits (95), Expect = 9e-06 Identities = 60/314 (19%), Positives = 107/314 (34%), Gaps = 59/314 (18%) Query: 37 APYFAKEFTHTNDPTLALISAFLVFMLGFFMRPLGSLFFGKLGDKKGRKTSMVYSIILMA 96 P A +F T + +AF++ G+ +GKL D+ G K +++ II+ Sbjct: 37 LPDIANDFNKPPASTNWVNTAFMLTFSI------GTAVYGKLSDQLGIKRLLLFGIIINC 90 Query: 97 LGSFMLALLPTKEIVGEWAFLFLLLARLLQGFSVGGE------YGVVATYLSELGKNGKK 150 GS + VG F L++AR +QG G VVA Y+ + + Sbjct: 91 FGSVIGF-------VGHSFFSLLIMARFIQG--AGAAAFPALVMVVVARYIPKENRGKAF 141 Query: 151 GFYGSFQYVTLVGGQLLAIFSLFIVENIYTHEQISAFAWRYLFALGGILALLSLFLRNIM 210 G GS + +G + I I+ W YL + I + FL ++ Sbjct: 142 GLIGS---IVAMGEGVGPAIGGMIAHYIH---------WSYLLLIPMITIITVPFLMKLL 189 Query: 211 EETMDNEATPQKETNVKETHIKETQRGSLKELLHHKKALMIVFGLTMGGSLCFYTFTVYL 270 ++ E + ++K +L + + T + Sbjct: 190 KK----EVRIKGHFDIKGI------------ILMSVGIVFFMLFTTSYSISFLIVSVLSF 233 Query: 271 KIFLTNSSSFSPK-------ESSFIMLLALSYFIFFQPLCG---MLADKIKRTQMLMVFA 320 IF+ + + ++ M+ L I F + G M+ +K L Sbjct: 234 LIFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAE 293 Query: 321 ITGLIVTPVVFYGI 334 I +I+ P I Sbjct: 294 IGSVIIFPGTMSVI 307
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 32.7 bits (74), Expect = 0.008 Identities = 31/162 (19%), Positives = 57/162 (35%), Gaps = 13/162 (8%) Query: 217 IPTPYNTTLNDSEPQEGLVQISPHPPTHYTIYPKKNRFDD--LTNPTNPTLKETQQETKE 274 + T TT N+ + P+ + + R D+ + P T ET + E Sbjct: 992 VDTTNITTPNNIQADV---------PSVPSNNEEIARVDEAPVPPPAPATPSETTETVAE 1042 Query: 275 REPTLKKETPTTLKPIMPISASNTENHDKTENQKIPNHPIKEDALQESPQENPQKENIEE 334 K + +A N E + ++ N E A S + Q +E Sbjct: 1043 NSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKE 1102 Query: 335 --NIEEKESLKEEEKETQNAPSFSPITPTSAKKPVMVKELSE 374 +E++E K E ++TQ P + ++ V+ +E Sbjct: 1103 TATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAE 1144
>OMS28PORIN#OMS28 porin signature. Length = 257 Score = 30.1 bits (67), Expect = 0.014 Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 2/102 (1%) Query: 143 NAAKNGEEHSNEGLITVNKTGQDIESLYEKMQNATSLADSLNQRS--NEITQVISLIDDI 200 N + ++ N+ L T+NK +D+ S E ++ ++ N + +SL+ D+ Sbjct: 47 NKKLDQKDQVNQALDTINKVTEDVSSKLEGVRESSLELVESNDAGVVKKFVGSMSLMSDV 106 Query: 201 AEQTNLLALNAAIEAARAGEHGRGFAVVADEVRKLAEKTQKA 242 A+ T + + A I A +G G V + +K ++TQKA Sbjct: 107 AKGTVVASQEATIVAKCSGMVAEGANKVVEMSKKAVQETQKA 148
>FLAGELLIN#Flagellin signature. Length = 507 Score = 244 bits (625), Expect = 5e-77 Identities = 125/518 (24%), Positives = 209/518 (40%), Gaps = 22/518 (4%) Query: 2 AFQVNTNINAMNAHVQSALTQNALKTSLERLSSGLRINKAADDASGMTVADSLRSQASSL 61 A +NTN ++ +Q++L +++ERLSSGLRIN A DDA+G +A+ S L Sbjct: 1 AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60 Query: 62 GQAIANTNDGMGIIQVADKAMDEQLKILDTVKVKATQAAQDGQTTESRKAIQSDIVRLIQ 121 QA N NDG+ I Q + A++E L V+ + QA + K+IQ +I + ++ Sbjct: 61 TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120 Query: 122 GLDNIGNTTTYNGQALLSGQFTNKEFQVGAYSNQSIKASIGSTTSDKIGQVRI-ATGALI 180 +D + N T +NG +LS + QVGA ++I + +G G Sbjct: 121 EIDRVSNQTQFNGVKVLSQDN-QMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKE 179 Query: 181 TASGDISLTFKQVDGVNDVTLESVKVSSSAGTGIGVLAEVINKNSNRTGVKAYASVITTS 240 GD+ +FK V G + + + K +G V ++ V A +TT Sbjct: 180 ATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTD 239 Query: 241 DVAVQSGSLSNLTLNGIHLGNIADIKKNDSDGRLVAAINAVTSETGVEAYTDQKGRLNLR 300 D N + K A A+ + + + + Sbjct: 240 DAE-----------NNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTID 288 Query: 301 SIDGRGIEIKTDSVSNGPSALTMVNGGQDLTKGSTNYGRLSLTRLDAKSINV------VS 354 + G K + NG V S + +N + Sbjct: 289 TKTGNDGNGKVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKT 348 Query: 355 ASDSQHLGFTAIGFGESQVAETTVNLRDVTGNFNANVKSASGANYNAVIASGNQNL---G 411 ++S L ++ TVN + T N + + +G + + Sbjct: 349 KNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINE 408 Query: 412 SGVTTLRGAMVVIDIAESAMKMLDKVRSDLGSVQNQMISTVNNISITQVNVKAAESQIRD 471 + + +SA+ +D VRS LG++QN+ S + N+ T N+ +A S+I D Sbjct: 409 DAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIED 468 Query: 472 VDFAEESANFNKNNILAQSGSYAMSQANTVQQNILRLL 509 D+A E +N +K IL Q+G+ ++QAN V QN+L LL Sbjct: 469 ADYATEVSNMSKAQILQQAGTSVLAQANQVPQNVLSLL 506
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.4 bits (66), Expect = 0.033 Identities = 23/185 (12%), Positives = 64/185 (34%), Gaps = 19/185 (10%) Query: 133 NEARDTPEYKHYNTQQLQAQATLNVFNGFSDVNNVKEKSAT--YRSNVATLEYSRQSIFL 190 + R + +L + L F +V+ + T + +T + + L Sbjct: 149 EQTRYQILSRSIELNKL-PELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKEL 207 Query: 191 QVVQQYYEYFNNLARMIALQKKLEQIQTDIKRVTKLYDKGLTTIDDL-----QSLKAQGN 245 + ++ E LAR+ + ++ + + L K + + ++A Sbjct: 208 NLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNE 267 Query: 246 LSEY--DILDMQFALEQNRLTLEYLTNLSVKNLKKTTIDAPNLQLRE-RKDLVSLREQIS 302 L Y + ++ + + + +T K +D +LR+ ++ L +++ Sbjct: 268 LRVYKSQLEQIESEILSAKEEYQLVTQ----LFKNEILD----KLRQTTDNIGLLTLELA 319 Query: 303 ALKYQ 307 + + Sbjct: 320 KNEER 324
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 51.8 bits (124), Expect = 6e-10 Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 5/82 (6%) Query: 27 NVKAIQDSKLTLDSTGIVDSIKVTEGSVVKKGDVLLLLYNQDKQAQSDSTEQQLIFAKKQ 86 K I+ IV I V EG V+KGDVLL L +A + T+ L+ A+ + Sbjct: 95 RSKEIKPI-----ENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLE 149 Query: 87 YQRYSKIGGAVDKNTLEGYEFT 108 RY + +++ N L + Sbjct: 150 QTRYQILSRSIELNKLPELKLP 171 Score = 32.1 bits (73), Expect = 0.002 Identities = 19/115 (16%), Positives = 41/115 (35%), Gaps = 13/115 (11%) Query: 70 QAQSDSTEQQLIFAKKQYQR--YSKIGGAVDKNTLEGYEFTYRRLESDYAYSIAVLNKTI 127 +++ S +++ + ++ K+ D L L + A + ++ Sbjct: 279 ESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGL---------LTLELAKNEERQQASV 329 Query: 128 LRAPFDGVVASKNIQVGEGVSANSTVLLRLVSHARKLVIE--FDSKYINAVKVGD 180 +RAP V + GV + L+ +V L + +K I + VG Sbjct: 330 IRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQ 384
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 899 bits (2324), Expect = 0.0 Identities = 286/1040 (27%), Positives = 518/1040 (49%), Gaps = 42/1040 (4%) Query: 1 MYKTAINRPITTLMFALAIVFFGTMGFKKLSVALFPKIDLPTVVVTTTYPGASAEIIESK 60 M I RPI + A+ ++ G + +L VA +P I P V V+ YPGA A+ ++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VTDKIEEAVMGIDGIKKVTSTSSKNVSIVV-IEFELEKPNEEALNDVMNKISSVR-FDDS 118 VT IE+ + GID + ++STS S+ + + F+ + A V NK+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 119 NIKKPSINKFDTDSQAIISLFVSSSSVPAT--TLNDYAKNTIKPMLQKINGVGGVQLNGF 176 +++ I+ + S ++ S + T ++DY + +K L ++NGVG VQL G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG- 179 Query: 177 RERQIRIYADPTLMNKYNLTYADLFSTLKAENVEIDGGRIVNS------QRELSILVNAN 230 + +RI+ D L+NKY LT D+ + LK +N +I G++ + Q SI+ Sbjct: 180 AQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 231 SYSVADVEKIQV-----GNHVRLGDIAKIEIGLEEDNTFASFKDKPGVILEIQKIAGANE 285 + + K+ + G+ VRL D+A++E+G E N A KP L I+ GAN Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 286 IEIVDRVYEALKRIQAISP-NYEIRPFLDTTSYIRTSIEDVKFDLILGAILAVLVVFAFL 344 ++ + L +Q P ++ DTT +++ SI +V L +L LV++ FL Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 345 RNGTITLVSAISIPISIMGTFALIQWMGFSLNMLTMVALTLAIGIIIDDAIVVIENIHK- 403 +N TL+ I++P+ ++GTFA++ G+S+N LTM + LAIG+++DDAIVV+EN+ + Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 404 KLEMGMSKRKASYEGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQSFGITVALAIA 463 +E + ++A+ + + +I ALV I+ +L +VF+P+ G G ++ F IT+ A+A Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 464 LSYVVVVTIIPMVSSVVVNPRHS-------RFYVWSEPFFKALESRYTRLLQWVLNHKLI 516 LS +V + + P + + ++ P + F+ W F + YT + +L Sbjct: 480 LSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539 Query: 517 IFIAVVLVFVGSLFVASKLGMDFMLKEDRGRFLVWLKAKPGVSIDY----MTQKSKIFQK 572 + L+ G + + +L F+ +ED+G FL ++ G + + + Q + + K Sbjct: 540 YLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLK 599 Query: 573 AIEKHDEVEFTTLQVGY-GTSQNPFKAKIFVQLKPLKERKKEHELGQFELMSALRKELRS 631 + + E FT + G +QN FV LKP +ER E ++ + EL Sbjct: 600 NEKANVESVFTVNGFSFSGQAQNA--GMAFVSLKPWEERNG-DENSAEAVIHRAKMELGK 656 Query: 632 LPEAKDLENINLSEVSLIGGGGDSSPFQTFVFSHSQEAVDKSVENLRKFLLESPELKGKV 691 + + + N+ + G ++ F + + D + + L + + + Sbjct: 657 IRDGF-VIPFNMPAIV---ELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASL 712 Query: 692 EGYHTSTSESQPQLQLKILRQNANKYGVSAQTIGSVVSSAFSGTSQASVFKEDGKEYDMI 751 + E Q +L++ ++ A GVS I +S+A G + + F + G+ + Sbjct: 713 VSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGG-TYVNDFIDRGRVKKLY 771 Query: 752 IRVPDDKRVSVEDIKRLQVRNKYDKLMFLDALVEITETKSPSSISRYNRQRSVTVLAQPN 811 ++ R+ ED+ +L VR+ +++ A + RYN S+ + + Sbjct: 772 VQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEA- 830 Query: 812 RNAGVSLGEILTQVSKNTKEWLVEGANYRFTGEADNAKESNGEFLVALATAFVLIYMILA 871 G S G+ + + +N L G Y +TG + + S + +A +FV++++ LA Sbjct: 831 -APGTSSGDAMALM-ENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLA 888 Query: 872 ALYESILEPFIIMVTMPLSFSGAFFALGLVHQPLSMFSMIGLILLIGMVGKNATLLIDVA 931 ALYES P +M+ +PL G A L +Q ++ M+GL+ IG+ KNA L+++ A Sbjct: 889 ALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFA 948 Query: 932 NE-ERKKGLNIQEAILFAGKTRLRPILMTTIAMVCGMLPLALASGDGAAMKSPIGIAMSG 990 + K+G + EA L A + RLRPILMT++A + G+LPLA+++G G+ ++ +GI + G Sbjct: 949 KDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMG 1008 Query: 991 GLMISMVLSLLIVPVFYRLL 1010 G++ + +L++ VPVF+ ++ Sbjct: 1009 GMVSATLLAIFFVPVFFVVI 1028
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 28.1 bits (62), Expect = 0.026 Identities = 27/139 (19%), Positives = 52/139 (37%), Gaps = 24/139 (17%) Query: 43 DSSYTAFLWGAKG----GYQFAFF-KALALRGE--FSYLM---------AIKPTALHT-- 84 + SY + A GY FAFF AL L+ SY + + AL Sbjct: 1128 NQSYNYLAYSAATRASYGYDFAFFRNALVLKPSVGVSYNHLGSTNFKSNSNQKVALKNGA 1187 Query: 85 INTSLLSLNMDVLSDFYTYKKYSFGVYGGLGIGYFYQSDHLGMKNSSFMGYNGLINVGLG 144 + L + + +V + +Y F + G+ + +S+ + N Sbjct: 1188 SSQHLFNASANVEARYYYGDTSYFYMNAGVL------QEFANFGSSNAVSLNTFKVNATR 1241 Query: 145 STIDRHHRIELGAKIPFSK 163 + ++ H R+ +G ++ +K Sbjct: 1242 NPLNTHARVMMGGELKLAK 1260
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 273 bits (698), Expect = 5e-76 Identities = 106/397 (26%), Positives = 181/397 (45%), Gaps = 14/397 (3%) Query: 2802 AGNNSIMWLNELFAAKGGNPLFAPYYLQDNPTEHIVTLMKDITSALGMLSNSNLKNNSTD 2861 +G L L + +A + I + T+ L +++ K + Sbjct: 904 SGAQGRDLLQTLLI-DSHDAGYARTMIDATSANEITKQLNTATTTLNNIASLEHKTSGLQ 962 Query: 2862 VLQLNTYTQQMSRLAKLSNFASFDSTDFSERLSSLKNQRFADATPNAMDVILKYSQRDKL 2921 L L+ SRL LS + F++RL +LK+QRFA +A +V+ +++ + + Sbjct: 963 TLSLSNAMILNSRLVNLSRRHTNHIDSFAKRLQALKDQRFAS-LESAAEVLYQFAPKYEK 1021 Query: 2922 KNNLWATGVGGVSFVENGTGTLYGVNVGYDRFVRG---VIVGGYAAYGYSGFYER--ITN 2976 N+WA +GG S G +LYG + G D ++ G IVGG+ +YGYS F + N Sbjct: 1022 PTNVWANAIGGTSLNSGGNASLYGTSAGVDAYLNGEVEAIVGGFGSYGYSSFSNQANSLN 1081 Query: 2977 SKSDNVDVGLYARAFIKKSELTFSVNETWGANKTQISSNDTLLSMINQSYKYSTWTTNAK 3036 S ++N + G+Y+R F + E F G++++ ++ LL +NQSY Y ++ + Sbjct: 1082 SGANNTNFGVYSRIFANQHEFDFEAQGALGSDQSSLNFKSALLRDLNQSYNYLAYSAATR 1141 Query: 3037 VNYGYDFMFKNKSIILKPQIGLRYYYIGMSGLEGVMNNALYNQFKANADPSKKSVLTIDF 3096 +YGYDF F +++LKP +G+ Y ++G + + + S + + Sbjct: 1142 ASYGYDFAFFRNALVLKPSVGVSYNHLGSTNFKS----NSNQKVALKNGASSQHLFNASA 1197 Query: 3097 ALENRHYFNTNSYFYAIGGVGRDLLVNSMGDKLVRFIGNNTLSYRKGDLYNTFANITTGG 3156 +E R+Y+ SYFY GV ++ N V + R NT A + GG Sbjct: 1198 NVEARYYYGDTSYFYMNAGVLQEFA-NFGSSNAVSLNTFKVNATRNP--LNTHARVMMGG 1254 Query: 3157 EVRLFKSFYANAGVGARFGLDYKMIDIIGNIGMRLAF 3193 E++L K + N G L + N+GMR +F Sbjct: 1255 ELKLAKEVFLNLGFVYLHNLISNIGHFASNLGMRYSF 1291 Score = 42.7 bits (100), Expect = 3e-05 Identities = 43/224 (19%), Positives = 77/224 (34%), Gaps = 19/224 (8%) Query: 249 SNGATTISGV-TFNNNGALTYKGGNGIGGSITFTNSNINHYKLNLNANSVTFNNSTLGSM 307 + G T+ + N N T + G G S+T ++++ K +N ++ S L Sbjct: 386 AGGKNTVVNINRINTNADGTIRVG-GFKASLTTNAAHLHIGKGGINLSNQASGRSLLVEN 444 Query: 308 SNGNANTVGDAYILNANNITFNNLTFNGGWFVFNRPDSKIDFQGATTINNPTSPFVNMTG 367 GN G L NN G + +F+ T N T+ F N Sbjct: 445 LTGNITVDGP---LRVNNQV-GGYALAGS-------SANFEFKAGTDTKNGTATFNNDIS 493 Query: 368 KVNINANAIFNIQNYTPSIGSAYTLFSMKNGNITYNDVSNLWNIIRLKNTQATKDNSKNA 427 + I + F+ + ++ V+N NI +L A+ + + Sbjct: 494 LGRFVNLKVDAHTANFKGIDTGNGGFNT----LDFSGVTNKVNINKL--ITASTNVAVKN 547 Query: 428 TSNNNTHTYYVTYNLGGTLYNFRQIFSPNSIVLQSVYYGTNNIY 471 + N ++G + I S + I + GT +IY Sbjct: 548 FNINELVVKTNGVSVGEYTHFSEDIGSQSRINTVRLETGTRSIY 591 Score = 34.6 bits (79), Expect = 0.007 Identities = 16/100 (16%), Positives = 31/100 (31%), Gaps = 5/100 (5%) Query: 700 SYSFDGINNAFNENKFNGGSFNFNHAEQTNAFNNNSFNSGSFSFNAKQVDFNHNSFNGGV 759 SYS + E FN + ++A Q +N + G+ + N + G Sbjct: 272 SYSTINTSKVTGEVNFNHLTVGDHNAAQAGIIASNKTHIGTLDLW-QSAGLNIIAPPEGG 330 Query: 760 FNF---NNTPKASFTDDTFNVNNQFKING-TQTDFTFNKG 795 + + + + + + N TQ N Sbjct: 331 YKDKPNDKPSNTTQNNAKNDKQESSQNNSNTQVINPPNSA 370
>LCRVANTIGEN#Low calcium response V antigen signature. Length = 326 Score = 30.4 bits (68), Expect = 0.001 Identities = 15/33 (45%), Positives = 20/33 (60%) Query: 16 KRKRLLTELAELEAEIKVGSERKSSFNVSLSPS 48 R +L ELAEL AE+K+ S ++ N LS S Sbjct: 149 ARSKLREELAELTAELKIYSVIQAEINKHLSSS 181
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 55.2 bits (133), Expect = 1e-10 Identities = 24/110 (21%), Positives = 45/110 (40%), Gaps = 6/110 (5%) Query: 194 ILIAEDSLSALKTLEKIVQTLELRYLAFPNGRELLDYLYEKEHYQQVGVVITDLEMPNVS 253 IL+A+D + L + + N L ++ +V+TD+ MP+ + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAA----GDGDLVVTDVVMPDEN 61 Query: 254 GFEVLKTIKADHRTEHLPVIINSSMSSDSNRQLAQSLEADGFVVKSNILE 303 F++L IK LPV++ S+ ++ A A ++ K L Sbjct: 62 AFDLLPRIKKAR--PDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLT 109
>PF06580#Sensor histidine kinase Length = 349 Score = 27.9 bits (62), Expect = 0.034 Identities = 25/127 (19%), Positives = 44/127 (34%), Gaps = 20/127 (15%) Query: 129 IFFEFSPILKELHFTLSVKL----SLSLEQESKRINLKALQNILNNAKSAHFKF-VLE-- 181 + F +S + HF + K + ++ L AL+ +N HF F L Sbjct: 127 VTFMWSLLYFGWHFFKNYKQAEIDQWKMASMAQEAQLMALKAQIN----PHFMFNALNNI 182 Query: 182 SQNAAQSIAEIQSLLKQLSLKNNEIFLMPLGTTNNE---LDKNLKTL-APLAIEHGFRLS 237 + + + +L LS E+ L +N L L + + L + + Sbjct: 183 RALILEDPTKAREMLTSLS----ELMRYSLRYSNARQVSLADELTVVDSYLQLA-SIQFE 237 Query: 238 DRLHIRL 244 DRL Sbjct: 238 DRLQFEN 244
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 35.3 bits (81), Expect = 4e-05 Identities = 19/90 (21%), Positives = 31/90 (34%) Query: 43 VQKLREHGGEFFEMRDNEKLIGICGLNRINQTEAELCKFHMDSAYQSQGLGQKLYESVEK 102 V + E G F IG + A + + Y+ +G+G L + Sbjct: 57 VSYVEEEGKAAFLYYLENNCIGRIKIRSNWNGYALIEDIAVAKDYRKKGVGTALLHKAIE 116 Query: 103 YAFIKGYTKISLHVSKSQIKACNLYQKLGF 132 +A + + L I AC+ Y K F Sbjct: 117 WAKENHFCGLMLETQDINISACHFYAKHHF 146
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 35.2 bits (81), Expect = 5e-04 Identities = 43/273 (15%), Positives = 92/273 (33%), Gaps = 49/273 (17%) Query: 53 NTYGIFAAGY-LARPLGGIVMAHFGDRFGRKNMFMLSILLMVIPTFALALMPTFNHLVGF 111 YGI A Y L + V+ DRFGR+ + ++S+ + +A P L Sbjct: 43 AHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVL--- 99 Query: 112 GVDSMGLTPKNAHYLGYIAPVFLVLVRICQGVAVGGELPGAWVFVHEHAPQGQKNTYIGF 171 Y+G RI G+ G A ++ + ++ + GF Sbjct: 100 -------------YIG----------RIVAGIT-GATGAVAGAYIADITDGDERARHFGF 135 Query: 172 LTASVVSGILLGSLVYIGIYMVFDKPVVEAWAWRVAFGLGGIFGIISVYLRCFLEETPVF 231 ++A G++ G + +G M P F ++ CFL Sbjct: 136 MSACFGFGMVAGPV--LGGLMGGFSP-------HAPFFAAAALNGLNFLTGCFLLPESHK 186 Query: 232 QQMKQDDALVKFPLKEVFKNSLFGISISMLITWVLTACI-----LIFILFVPNFTLTHPN 286 + + PL + +++ + + + ++++F + Sbjct: 187 GERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGED------R 240 Query: 287 FYFTPFEKTY-FQILGLVGIVSSIILTGFLADK 318 F++ G++ ++ ++TG +A + Sbjct: 241 FHWDATTIGISLAAFGILHSLAQAMITGPVAAR 273
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 392 bits (1009), Expect = e-138 Identities = 112/379 (29%), Positives = 188/379 (49%), Gaps = 26/379 (6%) Query: 2 LKRASFVEVNTASLRHNFNAVKSIVPKDACVMAVVKANAYGAGALK-ASEIFLQEGANYL 60 + R ++ +L+ N + V+ A V +VVKANAYG G + S I + Sbjct: 1 MTRPIQASLDLQALKQNLSIVRQAAT-HARVWSVVKANAYGHGIERIWSAI---GATDGF 56 Query: 61 GVATLDEALELRSHFSQTPILIL-GYSPNANASMLIDNDLSVMVFSLEQAEVFSQMALKS 119 + L+EA+ LR + PIL+L G+ + + + L+ V S Q + LK+ Sbjct: 57 ALLNLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNARLKA 116 Query: 120 QKRLKIHLKIDTGMHRLGLEPTFKSIEIVKKIRALKGLEIEGIFTHLSNADANIKTHAKN 179 L I+LK+++GM+RLG +P + + + +++RA+ + + +H + A+ H Sbjct: 117 P--LDIYLKVNSGMNRLGFQPD-RVLTVWQQLRAMANVGEMTLMSHFAEAE-----HPDG 168 Query: 180 QMKAFNAFLEQLLNQKIEFKYRHAYNSAGILSLCNGNENRFLNLYRPGIMLYGFYPSNEI 239 A A +EQ + +E + R NSA L + + RPGI+LYG PS + Sbjct: 169 ISGAM-ARIEQAA-EGLECR-RSLSNSAATL----WHPEAHFDWVRPGIILYGASPSGQW 221 Query: 240 KESSQTILKNVISLKAQIVQIKRVKKGEFIGYGEHFYTNEETLVGTLALGYADGLVRALG 299 ++ + T L+ V++L ++I+ ++ +K GE +GYG + +E +G +A GYADG R Sbjct: 222 RDIANTGLRPVMTLSSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHAP 281 Query: 300 NRIQVAINNQLAPLIGKVCMDQCFVKLNDI-QAKEGDEVILFGDKSVKANDASEIAALLN 358 V ++ +G V MD V L QA G V L+G K +K +D +AA Sbjct: 282 TGTPVLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWG-KEIKIDD---VAAAAG 337 Query: 359 TIPYETISTLSKRLERVYV 377 T+ YE + L+ R+ V V Sbjct: 338 TVGYELMCALALRVPVVTV 356
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 30.0 bits (67), Expect = 0.005 Identities = 13/48 (27%), Positives = 22/48 (45%) Query: 46 TNESLSQTNEKSHEINLEESPNNPNTPNDEKAPHNEEDHSNTLFQNLD 93 N+ + N ++PNNP+ PN+ P+N ++ N N D Sbjct: 284 ANDDQPNNPDNPDNPNNPDNPNNPDEPNNPDNPNNPDNPDNGDNNNSD 331
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 31.3 bits (71), Expect = 0.002 Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 1/43 (2%) Query: 136 GVVPEEALEIYSEISETCKRLKLKGLMCIGAHADNEKEIEKSF 178 G P+ L ++ ++ + LM A A++ I + Sbjct: 132 GFQPDRVLTVWQQL-RAMANVGEMTLMSHFAEAEHPDGISGAM 173
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 60.2 bits (146), Expect = 3e-12 Identities = 29/129 (22%), Positives = 50/129 (38%), Gaps = 13/129 (10%) Query: 181 GEVLFLDDSKTARKTLKNHLSKLGFSITEAVDGEDGLNKLEMLFKKYGDNLRKHLKFIIS 240 +L DD R L LS+ G+ + + + +++ Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIA----------AGDGDLVVT 53 Query: 241 DVEMPKMDGYHFLFKLQKDPRFAYIPVIFNSSICDNYSAERAKEMGAVAYLVK-FDAEKF 299 DV MP + + L +++K +PV+ S+ +A +A E GA YL K FD + Sbjct: 54 DVVMPDENAFDLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTEL 111 Query: 300 TEEISKILD 308 I + L Sbjct: 112 IGIIGRALA 120
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 56.0 bits (135), Expect = 3e-10 Identities = 23/121 (19%), Positives = 54/121 (44%), Gaps = 4/121 (3%) Query: 686 VLAIDDSSTDRAIIRKCLKPLGITLLEATNGLEGLEMLKNGDKTPDAILVDIEMPKMDGY 745 +L DD + R ++ + L G + +N + G D ++ D+ MP + + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAG--DGDLVVTDVVMPDENAF 63 Query: 746 TFASEVRKYNKFKNLPLIAVTSRVTKTDRMRGVESGMTEYITKPYSGEYLTTVVKRSIKL 805 ++K +LP++ ++++ T ++ E G +Y+ KP+ L ++ R++ Sbjct: 64 DLLPRIKKAR--PDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 806 E 806 Sbjct: 122 P 122
>LIPOLPP20#LPP20 lipoprotein precursor signature. Length = 175 Score = 293 bits (752), Expect = e-105 Identities = 174/175 (99%), Positives = 175/175 (100%) Query: 1 MKNQVKKILGMSVIAAMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK 60 MKNQVKKILGMSV+AAMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK Sbjct: 1 MKNQVKKILGMSVVAAMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK 60 Query: 61 YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRS 120 YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRS Sbjct: 61 YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRS 120 Query: 121 ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK 175 ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK Sbjct: 121 ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK 175
>BINARYTOXINB#Binary toxin B family signature. Length = 764 Score = 28.1 bits (62), Expect = 0.046 Identities = 21/97 (21%), Positives = 36/97 (37%), Gaps = 6/97 (6%) Query: 155 SKSMGDLLAKAVPIERILKAYSVPVSSLENYEKIYYQNAFKPKVQITFDNNSDAEIKSAL 214 + + D L P + +A + E + YQ + FD + IK+ L Sbjct: 536 AVNPSDPLETTKPDMTLKEALKIAFGFNEPNGNLQYQGKDITEFDFNFDQQTSQNIKNQL 595 Query: 215 ISAYAR-VLTPSDEEKLYQ-----IKNEVFTENANGI 245 A + T D+ KL I+++ F + N I Sbjct: 596 AELNATNIYTVLDKIKLNAKMNILIRDKRFHYDRNNI 632
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 31.7 bits (72), Expect = 0.007 Identities = 32/134 (23%), Positives = 53/134 (39%), Gaps = 25/134 (18%) Query: 216 LSIVGKPNAGKSSLLNAMLLEERA---LVSDIKGTTR-DTIEE-------------VIEL 258 + ++ +AGK++L ++L A L S KGTTR D + Sbjct: 6 IGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW 65 Query: 259 QGHKVRLIDTAGIRESADKIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFNLIDTLN 318 + KV +IDT G + ++ R SL L D + + ++ + L L Sbjct: 66 ENTKVNIIDTPGHMDFLAEVYR-----SLSVL---DGAILLISAKDGVQAQTRILFHALR 117 Query: 319 RAKKPCIVVLNKND 332 + P I +NK D Sbjct: 118 KMGIPTIFFINKID 131
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 428 bits (1103), Expect = e-147 Identities = 164/586 (27%), Positives = 276/586 (47%), Gaps = 91/586 (15%) Query: 10 RLILAIALSFLFIAIYSYFFQKPNKT--TTPTTKQETTNNHTATNPNAPNAFNATQAIPQ 67 R +L IAL F+ I+ + Q N TT+ TT +A + P + + Sbjct: 5 RNLLVIALLFVSFMIWQAWEQDKNPQPQAQQTTQTTTTAAGSAADQGVPASGQGKLISVK 64 Query: 68 ENLLSTISFEHARIEIDSLG-RIKQVYLKDKKYLTPKQKGFLEHVSHLFNPKANPQTPLK 126 ++L + I++ G ++Q L P L P + Sbjct: 65 TDVL--------DLTINTRGGDVEQALL-------PAYPKELNS-----------TQPFQ 98 Query: 127 ELPLLAADKLKPLEVRFLDSTLNNK--------AFNTPYSASKTTL----GPNEQLV--L 172 L + P + S L + Y+ K G NE V Sbjct: 99 LL------ETSPQFIYQAQSGLTGRDGPDNPANGPRPLYNVEKDAYVLAEGQNELQVPMT 152 Query: 173 TQDLGDLSVIKTLTFYDDLHYDLKIAFKSPNN------------------LIPSYVITNG 214 D + KT Y + + + N L P + Sbjct: 153 YTDAAGNTFTKTFVLKRG-DYAVNVNYNVQNAGEKPLEISSFGQLKQSITLPPHLDTGSS 211 Query: 215 YRPVADLDSYTFSGVLLENNDKKIEKIE---DKDAKEIKRFSNTLFLSSVDRYFTTLLFT 271 + +TF G D+K EK + D + + S +++ + +YF T Sbjct: 212 NFAL-----HTFRGAAYSTPDEKYEKYKFDTIADNENLNISSKGGWVAMLQQYFATAWIP 266 Query: 272 KDPQGFEALIDSEIGTKNPLGFISLKNEA-----------NLHGYIGPKDYRSLKAISPM 320 + G + +G N + I K++ N ++GP+ + A++P Sbjct: 267 HN-DGTNNFYTANLG--NGIAAIGYKSQPVLVQPGQTGAMNSTLWVGPEIQDKMAAVAPH 323 Query: 321 LTDVIEYGLITFFAKGVFVLLDYLYQFVGNWGWAIILLTIIVRLILYPLSYKGMVSMQKL 380 L ++YG + F ++ +F LL +++ FVGNWG++II++T IVR I+YPL+ SM K+ Sbjct: 324 LDLTVDYGWLWFISQPLFKLLKWIHSFVGNWGFSIIIITFIVRGIMYPLTKAQYTSMAKM 383 Query: 381 KELAPKMKELQEKYKGEPQKLQAHMMQLYKKHGANPLGGCLPLILQIPVFFAIYRVLYNA 440 + L PK++ ++E+ + Q++ MM LYK NPLGGC PL++Q+P+F A+Y +L + Sbjct: 384 RMLQPKIQAMRERLGDDKQRISQEMMALYKAEKVNPLGGCFPLLIQMPIFLALYYMLMGS 443 Query: 441 VELKSSEWILWIHDLSIMDPYFILPLLMGASMYWHQSVTPNTMTDPMQAKIFKLLPLLFT 500 VEL+ + + LWIHDLS DPY+ILP+LMG +M++ Q ++P T+TDPMQ KI +P++FT Sbjct: 444 VELRQAPFALWIHDLSAQDPYYILPILMGVTMFFIQKMSPTTVTDPMQQKIMTFMPVIFT 503 Query: 501 IFLITFPAGLVLYWTTNNILSVLQQLIINKVLENKKRVHAQSKKES 546 +F + FP+GLVLY+ +N+++++QQ +I + LE K+ +H++ KK+S Sbjct: 504 VFFLWFPSGLVLYYIVSNLVTIIQQQLIYRGLE-KRGLHSREKKKS 548
>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE signature. Length = 103 Score = 77.0 bits (189), Expect = 6e-22 Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 1/77 (1%) Query: 34 EQKGGEFSKLLKQSINELNNTQEQSDKALADMATGQIK-DLHQAAIAIGKAETSMKLMLE 92 Q F+ L +++ +++TQ + G+ L+ + KA SM++ ++ Sbjct: 27 PQPTISFAGQLHAALDRISDTQTAARTQAEKFTLGEPGVALNDVMTDMQKASVSMQMGIQ 86 Query: 93 VRNKAISAYKELLRTQI 109 VRNK ++AY+E++ Q+ Sbjct: 87 VRNKLVAAYQEVMSMQV 103
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 28.4 bits (63), Expect = 0.014 Identities = 10/38 (26%), Positives = 15/38 (39%) Query: 121 NVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAIGM 158 VN E +L + Y AN Q+A + I + Sbjct: 508 GVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 34.9 bits (80), Expect = 3e-04 Identities = 28/184 (15%), Positives = 80/184 (43%), Gaps = 12/184 (6%) Query: 108 NVELLKKLSPNLVVTFVG-NPKAVEHAKKFGISFLSFQETT--IAEAMQAMQ--AQATVL 162 N+ELL ++ P+ +V G P A+ +F + +A A +++ A L Sbjct: 88 NLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNL 147 Query: 163 EIDASKKFAKMQETLDFIAERLKGVKKKKGVELFHKAN----KISGHQAISSDILEKGGI 218 + A A+ ++ + + R + + + L + + G ++ +IL++ GI Sbjct: 148 QSAAETHLAQYEDFIRSMKPRFVK-RGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGI 206 Query: 219 DN-FGLKYVKFGRADISVEKIVK-ENPEIIFIWWVSPLTPEDVLNNPKFSTIKAIKNKQV 276 N + + +G +S++++ ++ +++ + + ++ P + + ++ + Sbjct: 207 PNAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGRF 266 Query: 277 YKLP 280 ++P Sbjct: 267 QRVP 270
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 33.4 bits (76), Expect = 0.001 Identities = 29/184 (15%), Positives = 75/184 (40%), Gaps = 12/184 (6%) Query: 107 NVELLKKLSPDLVVTFVGNPKAVEHAKKF--GILFLSFQEKTIAEVMEDID---AQAKAL 161 N+ELL ++ P +V G + E + G F K + A L Sbjct: 88 NLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNL 147 Query: 162 EVDASKKLAKMQETLDFIAERLKGVKKKKGVELFHKAN----KISGHQALDSDILEKGGI 217 + A LA+ ++ + + R + + + L + + G +L +IL++ GI Sbjct: 148 QSAAETHLAQYEDFIRSMKPRFVK-RGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGI 206 Query: 218 DN-FGLKYVKFGRADISVEKIVK-ENPEIIFIWWISPLSPEDVLNNPKFATIKAIKNKQV 275 N + + +G +S++++ ++ +++ + + ++ P + + ++ + Sbjct: 207 PNAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGRF 266 Query: 276 YKLP 279 ++P Sbjct: 267 QRVP 270
>TYPE3IMPPROT#Type III secretion system inner membrane P protein family signature. Length = 224 Score = 29.4 bits (66), Expect = 0.029 Identities = 9/23 (39%), Positives = 12/23 (52%) Query: 4 LRYKLLLFVFIGFWGLLVLNLFI 26 KL+LFV + W LL L + Sbjct: 195 TPIKLVLFVALDGWTLLSKGLIL 217