>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 31.3 bits (70), Expect = 0.027 Identities = 36/173 (20%), Positives = 71/173 (41%), Gaps = 19/173 (10%) Query: 121 QEESQLKERILKRKNEKIILNVNFIGEEVLGEEEASARFEKY---SQALKSNYIQYISIK 177 Q+ S+ ++ + + EK+ F+ E+ + + Y S+ K Y + Sbjct: 118 QDLSEEEKNSMNSRGEKVPFASRFVFEKKRETPKLIINIKDYAINSEQSKEVYYEIGKGI 177 Query: 178 ITTIFSQINILDFEY-----SKKEIVKRLDALYALALEEEKKQGMPKFINLDMEEFRDLE 232 I S+ LD E+ S + D L++ +E K + K I+++ ++ Sbjct: 178 SLDIISKDKSLDPEFLNLIKSLSDDSDSSDLLFSQKFKE-KLELNNKSIDINF-----IK 231 Query: 233 LTVESFMESIAK-----FDLNAGIVLQAYIPDSYEYLKKLHAFSKERVLKGLK 280 + F + + F + VL+ Y PD +EY+ KL E++ + LK Sbjct: 232 ENLTEFQHAFSLAFSYYFAPDHRTVLELYAPDMFEYMNKLEKGGFEKISESLK 284
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 33.9 bits (77), Expect = 4e-04 Identities = 35/203 (17%), Positives = 71/203 (34%), Gaps = 3/203 (1%) Query: 16 EELEVRISELEDENENLTDENTRLLASKEWLTKENAELLREKDNLTKANAELKKENDKLN 75 + L+ EL +E N ++ + S + EL K +L KA + + Sbjct: 81 KALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADS 140 Query: 76 HQIIALTKEQDSLKYERVQLQDAHGSLKELCANSEKDNQRLADKLKKLESAQKNLENSND 135 +I L E+ +L + L+ A + L + LE+ Q LE + + Sbjct: 141 AKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALE 200 Query: 136 QLLQAREKIAEEKTEMEKEMAHLKSLEAT---DKSELDLQNRRFKSTIEDLKRQNTKLEE 192 + + + +E E A L + +A + + I+ L+ + LE Sbjct: 201 GAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEA 260 Query: 193 ENIALKERVDGLKEQLSKQPKPQ 215 L++ ++G + Sbjct: 261 RQAELEKALEGAMNFSTADSAKI 283 Score = 31.2 bits (70), Expect = 0.003 Identities = 39/196 (19%), Positives = 78/196 (39%), Gaps = 3/196 (1%) Query: 16 EELEVRISELEDENENLTDENTRLLASKEWLTKENAELLREKDNLTKANAELKKENDKLN 75 + LE + L +L + + + L EK L AEL+K + Sbjct: 144 KTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAM 203 Query: 76 HQIIALTKEQDSLKYERVQLQDAHGSLKELCANSEKDNQRLADKLKKLESAQKNLENSND 135 + A + + +L+ E+ L L++ + + + K+K LE+ + LE Sbjct: 204 NFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQA 263 Query: 136 QLLQAREKIAEEKTEMEKEMAHLKSLEATDKSE---LDLQNRRFKSTIEDLKRQNTKLEE 192 +L +A E T ++ L++ +A ++E L+ Q++ + + L+R E Sbjct: 264 ELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASRE 323 Query: 193 ENIALKERVDGLKEQL 208 L+ L+EQ Sbjct: 324 AKKQLEAEHQKLEEQN 339 Score = 30.8 bits (69), Expect = 0.004 Identities = 31/202 (15%), Positives = 58/202 (28%), Gaps = 10/202 (4%) Query: 13 QVREELEVRISELEDENENLTDENTRLLASKEWLTKENAELLREKDNLTKANAELKKEND 72 + E + + + L E L A K L K + + L+ E Sbjct: 127 KALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKA 186 Query: 73 KLNHQIIALTKEQDSLKYERVQLQDAHGSLKELCANSEKDNQRLADKLKKLESAQKNLEN 132 L Q L+ + + E + LA + LE A + N Sbjct: 187 A-------LEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMN 239 Query: 133 SNDQLLQAREKIAEEKTEMEKEMAHLKSLEATDKSELDLQNR---RFKSTIEDLKRQNTK 189 + + + EK +E A L+ + + ++ L+ + Sbjct: 240 FSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKAD 299 Query: 190 LEEENIALKERVDGLKEQLSKQ 211 LE ++ L L+ L Sbjct: 300 LEHQSQVLNANRQSLRRDLDAS 321
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 1045 bits (2704), Expect = 0.0 Identities = 354/569 (62%), Positives = 443/569 (77%), Gaps = 4/569 (0%) Query: 3 KISRKEYVSMYGPTTGDKVRLGDTDLIAEVEHDYTIYGEELKFGGGKTLREGMSQSN-NP 61 ++SR Y +M+GPT GDKVRL DT+L EVE D+T +GEE+KFGGGK +R+GM QS Sbjct: 4 RMSRAAYANMFGPTVGDKVRLADTELFIEVEKDFTTHGEEVKFGGGKVIRDGMGQSQVTR 63 Query: 62 SKEELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEAL 121 +D +ITNALI+D+ GI KADIG+KDG+IA IGK GN DMQ GV + VGP TE + Sbjct: 64 EGGAVDTVITNALILDHWGIVKADIGLKDGRIAAIGKAGNPDMQPGV--TIIVGPGTEVI 121 Query: 122 AGEGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKW 181 AGEG IVTAGG+D+HIHFI PQQI A SG+T M+GGGTGPA GT ATT TPG ++ Sbjct: 122 AGEGKIVTAGGMDSHIHFICPQQIEEALMSGLTCMLGGGTGPAHGTLATTCTPGPWHIAR 181 Query: 182 MLRAAEEYSMNLGFLAKGNTSNDASLADQIEAGAIGFKIHEDWGTTPSAINHALDVADKY 241 M+ AA+ + MNL F KGN S +L + + GA K+HEDWGTTP+AI+ L VAD+Y Sbjct: 182 MIEAADAFPMNLAFAGKGNASLPGALVEMVLGGATSLKLHEDWGTTPAAIDCCLSVADEY 241 Query: 242 DVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPASTN 301 DVQV IHTDTLNE+G VEDT+AAI GRT+H +HTEGAGGGHAPDII++ G+ N++P+STN Sbjct: 242 DVQVMIHTDTLNESGFVEDTIAAIKGRTIHAYHTEGAGGGHAPDIIRICGQPNVIPSSTN 301 Query: 302 PTIPFTVNTEAEHMDMLMVCHHLDKSIKEDVQFADSRIRPQTIAAEDTLHDMGIFSITSS 361 PT P+TVNT AEH+DMLMVCHHL +I ED+ FA+SRIR +TIAAED LHD+G FSI SS Sbjct: 302 PTRPYTVNTLAEHLDMLMVCHHLSPTIPEDIAFAESRIRKETIAAEDILHDIGAFSIISS 361 Query: 362 DSQAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISE 421 DSQAMGRVGEV RTWQTADK K++ GRLKEE GDNDNFR+KRY++KYTINPAIAHG+S Sbjct: 362 DSQAMGRVGEVAIRTWQTADKMKRQRGRLKEETGDNDNFRVKRYIAKYTINPAIAHGLSH 421 Query: 422 YVGSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPVYYREMFAH 481 +GS+EVGK ADLVLW+PAFFGVKP+M++ GG IA + MGD NASIPTPQPV+YR MF Sbjct: 422 EIGSLEVGKRADLVLWNPAFFGVKPDMVLLGGTIAAAPMGDPNASIPTPQPVHYRPMFGA 481 Query: 482 HGKAKYDANITFVSQAAYDKGIKEELGLERQVLPVKNCR-NITKKDMQFNDTTAHIEVNP 540 +G+++ ++++TFVSQA+ D G+ LG+ ++++ V+N R I K M N T HIEV+P Sbjct: 482 YGRSRTNSSVTFVSQASLDAGLAGRLGVAKELVAVQNTRGGIGKASMIHNSLTPHIEVDP 541 Query: 541 ETYHVFVDGKEVTSKPATKVSLAQLFSIF 569 ETY V DG+ +T +PAT + +AQ + +F Sbjct: 542 ETYEVRADGELLTCEPATVLPMAQRYFLF 570
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 31.6 bits (71), Expect = 0.004 Identities = 25/152 (16%), Positives = 54/152 (35%), Gaps = 14/152 (9%) Query: 50 PKETFLQTDSGMQKIGNTKDEKKDDAFESLNLDPSKQESDLDKVADNVKKQESDAFKMPI 109 P ET ++ T ++ + DA E+ + + V N Q ++ + Sbjct: 1033 PSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKAN--TQTNEVAQSGS 1090 Query: 110 QTNQTQTEMKTTEETQEAKKELKAVEHTPMSTQKETQAVAKKETPHKKPKVTPKDKEAHK 169 +T +TQT T E +++ K + +E P +V+PK +++ Sbjct: 1091 ETKETQTTETKETATVEKEEKAKV------------ETEKTQEVPKVTSQVSPKQEQSET 1138 Query: 170 DKAKHAAKEPKAKKEAHKEVPKKANSKTNLTK 201 + + KE + N+ + + Sbjct: 1139 VQPQAEPARENDPTVNIKEPQSQTNTTADTEQ 1170
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 28.5 bits (63), Expect = 0.029 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Query: 123 GEELTTREKGFKAVKEFLNEQLENIDLNYPNLVVAYEPIWAIGTKKSA 170 E TT K F +K+ LN +L N + N N + EPI+A KK A Sbjct: 855 QAEATTLSKNFSDIKKELNAKLGNFN-NNNNNGLKNEPIYAKVNKKKA 901
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 62.8 bits (152), Expect = 1e-13 Identities = 62/263 (23%), Positives = 109/263 (41%), Gaps = 29/263 (11%) Query: 4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATL-AFTYLNESLEKRVRPIAQELNSPYVYE 62 ++GK I G A + I +A++ +QGA + A Y E LEK V + E + Sbjct: 6 IEGKIAFITGAA--QGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFP 63 Query: 63 LDVSKEEHFKPLYDSVKKDLGSLDFIVHSVAF--------APKEALEGSLLETSKSAFNT 114 DV + +++++G +D +V+ E E + S FN Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 115 AMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKYMAHYNVMGLAKAALESAVRYLAV 174 + +S Y + + ++ + +N A V S MA Y +KAA + L + Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPRTS-------MAAY---ASSKAAAVMFTKCLGL 173 Query: 175 DLGKYNIRVNALSAGPIRT-----LASSGIADFRMILKWNE---INAPLRKNVSLEEVGN 226 +L +YNIR N +S G T L + ++I E PL+K ++ + Sbjct: 174 ELAEYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIAD 233 Query: 227 AGMYLLSSLSSGVSGEVHFVDAG 249 A ++L+S + ++ VD G Sbjct: 234 AVLFLVSGQAGHITMHNLCVDGG 256
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 46.7 bits (111), Expect = 8e-08 Identities = 55/283 (19%), Positives = 108/283 (38%), Gaps = 16/283 (5%) Query: 28 LILSGSLTPHQSFQLGIAVLMGYVFGSFLIQFLSPLMSLESIAKISFGLIALSFLVCYFD 87 L+ S +T H L + LM + L LS + +S A+ + + Sbjct: 35 LVHSNDVTAHYGILLALYALMQFACAPVLGA-LSDRFGRRPVLLVSLAGAAVDYAI--MA 91 Query: 88 SIPFFW-LWIWRFIAGVASSALMILVAPLSLPYVKENKRALVGGFIFSAVGIGSVFSGFV 146 + PF W L+I R +AG+ + A + ++RA GF+ + G G V + Sbjct: 92 TAPFLWVLYIGRIVAGI-TGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVL 150 Query: 147 LPWISSYNIKWAWIFLGGSCLIAFILSLVGLK-----TRSLRKRSVKKEESAFKIPFHL- 200 + ++ + + F+ L R +R ++F+ + Sbjct: 151 GGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMT 210 Query: 201 ---WLLLISCALNAIGFLPHTLFWVDYLIRHLNISPTIAGTSWAFFG-FGATLGSLISGP 256 L+ + + +G +P L WV + + T G S A FG + ++I+GP Sbjct: 211 VVAALMAVFFIMQLVGQVPAAL-WVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGP 269 Query: 257 MAQKLGAKNANIFILILKSIACFLPIFFHQISLLNLSIFVMGA 299 +A +LG + A + +I L F + + + ++ + Sbjct: 270 VAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLAS 312
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.3 bits (65), Expect = 0.011 Identities = 9/18 (50%), Positives = 11/18 (61%) Query: 8 LILSGPSGAGKSTLTKYL 25 ++L G G GKSTL L Sbjct: 599 VVLEGTGGIGKSTLINTL 616
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 67.8 bits (165), Expect = 7e-14 Identities = 47/267 (17%), Positives = 89/267 (33%), Gaps = 19/267 (7%) Query: 185 EEKEEVKETPQEEKPKDDETQE-SETLKDEEVSKELETQEELEIPKEETQEQAKEQEPIK 243 E++ + +T P + + S +EE+++ E P ++ E K Sbjct: 986 EKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSK 1045 Query: 244 EQEPIKEQEPIKEQEPIKEQEPIKEQEPIKEQEPIKEQEPIKEQEPIKEQEPIKEETQEI 303 ++ E+ E + +E KE + + + E + +T E Sbjct: 1046 QESKTVEKNEQDATETTAQN-----REVAKEAKSNVKANTQTNEVAQSGSETKETQTTET 1100 Query: 304 KEEKQEKTQEEVKEETQEQAKEQEPIKKETQEIKEEKQEKTQDSPSVQELEAMQELVKEI 363 KE + +E+ K ET++ + P K+E+ E Q +KE Sbjct: 1101 KETATVEKEEKAKVETEKTQE--VPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEP 1158 Query: 364 QENSNGQED----KKETQENTEPPQE-------TPQDIEVQESAETPQEIPQENTEIPQE 412 Q +N D KET N E P +E E+ P N+E + Sbjct: 1159 QSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNK 1218 Query: 413 KEIPQEKETQKLETPQETSQESAEKTQ 439 + + + + E + S+ Sbjct: 1219 PKNRHRRSVRSVPHNVEPATTSSNDRS 1245 Score = 65.5 bits (159), Expect = 3e-13 Identities = 51/271 (18%), Positives = 101/271 (37%), Gaps = 24/271 (8%) Query: 205 QESETLKDEEVSKELETQEELEIPKEETQEQAKEQEPIKEQEPIKEQEPIKEQEPIKEQE 264 + ++T+ ++ Q ++ +E A+ E P P + E + E Sbjct: 987 KRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAP--VPPPAPATPSETTETVAENS 1044 Query: 265 PIKEQEPIKEQEPIKEQEPIKEQEPIKEQEPIKEETQ--EIKEEKQE--KTQEEVKEETQ 320 + + K ++ E + + + +K TQ E+ + E +TQ +ET Sbjct: 1045 KQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETA 1104 Query: 321 EQAKEQEPIKKETQEIKEEKQEKTQDSPSVQELEAMQELVKEIQENSNGQE-DKKETQEN 379 KE++ K ET++ +E + +Q SP ++ E +Q + +EN + ++Q N Sbjct: 1105 TVEKEEKA-KVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTN 1163 Query: 380 TEPPQETPQDIEVQESAETPQEIPQENTEIPQEKEIPQEKETQKLETPQETSQESAEKTQ 439 T E P + ET + Q P + +E P+ T+ + + T Sbjct: 1164 TTADTEQP-------AKETSSNVEQ-----PVTESTTVNTGNSVVENPENTTPATTQPTV 1211 Query: 440 KLETQE----DHYESIEDIPEPVMAKAMGEE 466 E+ H S+ +P V Sbjct: 1212 NSESSNKPKNRHRRSVRSVPHNVEPATTSSN 1242 Score = 65.5 bits (159), Expect = 4e-13 Identities = 49/264 (18%), Positives = 87/264 (32%), Gaps = 7/264 (2%) Query: 148 EALVQEEPNNEEQLLPTLNDQEEKEEVKEEEKEEVKEEEKEEV-KETPQEEKPK-DDETQ 205 EA V + K+E K EK E E +E +E K TQ Sbjct: 1022 EAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQ 1081 Query: 206 ESETLKDEEVSKELETQEELEIPKEETQEQAKEQEPIKEQEPIKEQEPIKEQEPIKEQEP 265 +E + +KE +T E E E +E+AK + ++ P + +QE + +P Sbjct: 1082 TNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQP 1141 Query: 266 IKEQEPIKEQEPIKEQEPIKEQEPIKEQEPIKEETQEIKEEKQEKTQEEVKEETQEQAKE 325 E + ++ + ++P KE + +++ E T E + Sbjct: 1142 QAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPEN 1201 Query: 326 QEPIKKETQEIKE-EKQEKTQDSPSVQELEAMQELVKEIQENSNGQEDKKETQENTEPP- 383 P + E + K + SV+ + E + + T NT Sbjct: 1202 TTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTNAVL 1261 Query: 384 ---QETPQDIEVQESAETPQEIPQ 404 + Q + + Q I Q Sbjct: 1262 SDARAKAQFVALNVGKAVSQHISQ 1285 Score = 56.6 bits (136), Expect = 2e-10 Identities = 40/272 (14%), Positives = 88/272 (32%), Gaps = 7/272 (2%) Query: 140 ELENLGDLEALVQEEPNNEEQ--LLPTLNDQEEKEEVKEEEKEEVKEEEKEEVKETPQEE 197 E+E N Q + ++ EE V E E ET E Sbjct: 984 EVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAEN 1043 Query: 198 KPKDDETQESETLKDEEVSKELETQEELEIPKEETQEQAKEQEPIKEQEPIKEQEPIKEQ 257 ++ +T E E + + + + Q E + + KE Sbjct: 1044 SKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKET 1103 Query: 258 EPIKEQEPIKEQEPIKEQEPIKEQEPIKEQEPIKEQEPIKEETQEIKEEKQEKTQEEVKE 317 ++++E K + ++ P + +QE + E ++ + + +E +E + Sbjct: 1104 ATVEKEEKAKVETEKTQEVPKVTSQVSPKQE---QSETVQPQAEPARENDPTVNIKEPQS 1160 Query: 318 ETQEQAKEQEPIKKETQEIKEEKQEKTQDSPSVQELE-AMQELVKEIQENSNGQEDKKET 376 +T A ++P K+ + +++ E T + +E Q N + K Sbjct: 1161 QTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPK 1220 Query: 377 QENTEPPQETPQDIEVQ-ESAETPQEIPQENT 407 + + P ++E S+ + + Sbjct: 1221 NRHRRSVRSVPHNVEPATTSSNDRSTVALCDL 1252 Score = 47.8 bits (113), Expect = 1e-07 Identities = 41/256 (16%), Positives = 87/256 (33%), Gaps = 29/256 (11%) Query: 306 EKQEKTQEEVKEETQEQAKEQEPIKKETQEIKEEKQEKTQDSPSVQELEAMQELVKEIQE 365 EK+ +T + T + P E E P+ E V E + Sbjct: 986 EKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSK 1045 Query: 366 NSNGQEDKKETQENTEPP-----------QETPQDIEVQESAETPQEIPQENTEIPQEKE 414 + + +K Q+ TE + + E A++ E + T +E Sbjct: 1046 QES-KTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETA 1104 Query: 415 IPQEKETQKLETP--QETSQESAEKTQKLE------------TQEDHYESIEDIPEPVMA 460 +++E K+ET QE + +++ + K E + D +I++ Sbjct: 1105 TVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNT 1164 Query: 461 KAMGEELPFLNEAVAKTPNNENDTETPKESDIKTPQEKEESDKTSSPLELRLNLQDLLKS 520 A E+ + + P E+ T S ++ P+ + + + K+ Sbjct: 1165 TADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQP---TVNSESSNKPKN 1221 Query: 521 LNQESLKSLLENKTLS 536 ++ S++S+ N + Sbjct: 1222 RHRRSVRSVPHNVEPA 1237
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 191 bits (486), Expect = 3e-63 Identities = 51/172 (29%), Positives = 84/172 (48%), Gaps = 18/172 (10%) Query: 56 GERPLFADRRAMKPNDLITIIVSEKASANYSSS----KDYKSASGGNSTPPRLTYNGLDE 111 G +PLF DRR D +TI++ E SA+ SSS +D K+ G ++ P L GL Sbjct: 61 GYQPLFEDRRPRNIGDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVPRYL--QGLFG 118 Query: 112 RKKQEAQYLDDKNNYNFTKSSNNTNFKGGGSQKKSEDLEIVLSARIIKVLENGNYFIYGN 171 + + + S F G G S L+ + +VL NGN + G Sbjct: 119 NARADVEA------------SGGNTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGE 166 Query: 172 KEVLVDGEKQILKVSGVIRPYDIERNNTIQSKFLADAKIEYTNLGHLSDSNK 223 K++ ++ + ++ SGV+ P I +NT+ S +ADA+IEY G+++++ Sbjct: 167 KQIAINQGTEFIRFSGVVNPRTISGSNTVPSTQVADARIEYVGNGYINEAQN 218
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 27.2 bits (60), Expect = 0.026 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 3/49 (6%) Query: 102 RGETILKALECIAFE---EFQLNSLHLEVMENNFKAIAFYEKNHYELEG 147 R + + AL A E E L LE + N A FY K+H+ + Sbjct: 102 RKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFIIGA 150
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 28.2 bits (63), Expect = 0.018 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 8/59 (13%) Query: 32 FVIVAWLFRF--KSIAFSILITLLVILVDIWVYSDVRQFLL-DTASSPILLLAALLIKW 87 V VA ++A +L +LV L I D+ + LL D + P LL LL Sbjct: 121 SVAVAMTLAPGWGTLAALLLTWVLVALTFI----DLDKMLLPDQLTLP-LLWGGLLFNL 174
>adhesinb#Adhesin B signature. Length = 310 Score = 27.5 bits (61), Expect = 0.039 Identities = 9/45 (20%), Positives = 23/45 (51%), Gaps = 4/45 (8%) Query: 147 PTLKERKALIDFIKENNPSDKITLLESSLSERIVYKRSVSEGLGV 191 T + K L++ +++ +ESS+ +R + ++VS+ + Sbjct: 232 GTPDQIKTLVEKLRKTKV--PSLFVESSVDDRPM--KTVSKDTNI 272
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 34.7 bits (79), Expect = 0.001 Identities = 51/231 (22%), Positives = 90/231 (38%), Gaps = 17/231 (7%) Query: 133 ELERKEAELKSKALQEHEESQIKRAEEISITENENELAKQELEKYALEAENKSLKQYNES 192 E RKEAE KA QE E+ + + E + TE + +LA EAE K L +E Sbjct: 137 EKARKEAEAAEKAFQEAEQRRKEIEREKAETERQLKLA---------EAEEKRLAALSEE 187 Query: 193 QNPDTLYEQQVAQEQSKEEERSNKQDLELETLMDNNIKKDLDDESL-GLLESLQILRNET 251 + +++++ QS+ + + L + +D + ++L G L + Sbjct: 188 AKAVEIAQKKLSAAQSEVVKMDGEIKTLNSRLSSSIHARDAEMKTLAGKRNELAQASAKY 247 Query: 252 NEV-----ANYLRANEIDYSRPTGENTTSRIASLALEEN--NQLNEKETNTQEQAKHTEK 304 E+ RAN+ +RP E T R+ + + E Q+ ET + Sbjct: 248 KELDELVKKLSPRANDPLQNRPFFEATRRRVGAGKIREEKQKQVTASETRINRINADITQ 307 Query: 305 EQEKPKIAPSNDIAIKDKYASLHSFFKQTELDIKQKRIKTKLDFKESFLNY 355 Q+ +N A + K+ + ++ +IK +D SF Sbjct: 308 IQKAISQVSNNRNAGIARVHEAEENLKKAQNNLLNSQIKDAVDATVSFYQT 358
>cloacin#Cloacin signature. Length = 551 Score = 37.0 bits (85), Expect = 3e-04 Identities = 25/108 (23%), Positives = 35/108 (32%), Gaps = 13/108 (12%) Query: 102 SSKNGKGFSGSGTSGMGYASGYGGTGNTSSNGSSASGTSGTST--NGIAGSDGSSGANG- 158 S +G+G + S G +G S SG S + G +GS G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 159 -SNGANGSNDTNGYQGVGSNP---------FPPIAGSGSGSSGSSNSG 196 NG N G G+ FP ++ G+G S S Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISA 109 Score = 34.7 bits (79), Expect = 0.001 Identities = 27/90 (30%), Positives = 33/90 (36%), Gaps = 14/90 (15%) Query: 124 GGTGNTSSNGSSASGTSGTSTNGIAGSDGSSGANGSNGANGSNDTNGYQGVGSNPFPPIA 183 GG G + G A TSG G G GA+ +G + N+ G Sbjct: 3 GGDGRGHNTG--AHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWG------------G 48 Query: 184 GSGSGSSGSSNSGYTPFMSGGGGIGGMGGG 213 GSGSG SG+ G GG G G Sbjct: 49 GSGSGIHWGGGSGHGNGGGNGNSGGGSGTG 78 Score = 33.5 bits (76), Expect = 0.003 Identities = 29/100 (29%), Positives = 38/100 (38%), Gaps = 18/100 (18%) Query: 154 SGANGSNGANGSNDTNGYQGVGSNPFPPIAGSGSGSSGSSNSGYTPFMSGGGGIGGMGGG 213 SG +G G++ T+G G G G G S SG++ + GG G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGP------TGLGVGGGASDGSGWSSENNPWGGGSGSGIH 55 Query: 214 FIPFPYSPGLQNGSGANGSNGTNGVNGANGTSGANGNNSA 253 + G G+ NG N G SG GN SA Sbjct: 56 W-----------GGGSGHGNGGGNGNSGGG-SGTGGNLSA 83 Score = 33.1 bits (75), Expect = 0.004 Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 2/76 (2%) Query: 184 GSGSGSSGSSNSGYTPFMSGGGGIGGMGGGFIPFPYSPGLQNGSGANGSNGTNGVNGANG 243 +SG+ N G T GGG G G P+ G +GSG + G+ NG Sbjct: 11 TGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGG--SGSGIHWGGGSGHGNGGGN 68 Query: 244 TSGANGNNSANGGAAS 259 + G+ + +A Sbjct: 69 GNSGGGSGTGGNLSAV 84 Score = 31.2 bits (70), Expect = 0.018 Identities = 21/79 (26%), Positives = 29/79 (36%) Query: 184 GSGSGSSGSSNSGYTPFMSGGGGIGGMGGGFIPFPYSPGLQNGSGANGSNGTNGVNGANG 243 G G G + ++S G G+G GG +S G +GS G +G Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHG 63 Query: 244 TSGANGNNSANGGAASTDS 262 G NGN+ G S Sbjct: 64 NGGGNGNSGGGSGTGGNLS 82
>TACYTOLYSIN#Bacterial thiol-activated pore-forming cytolysin signature. Length = 574 Score = 31.9 bits (72), Expect = 0.008 Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 9/85 (10%) Query: 414 ITTPPNQNKQDTANLEPSNNGGYTENESSESNNEN---------NPTTPQKESENSNPTE 464 +T + NKQ+TAN E + + ESSE E N K + P E Sbjct: 30 VTANADSNKQNTANTETTTTNEQPKPESSELTTEKAGQKMDDMLNSNDMIKLAPKEMPLE 89 Query: 465 SEKDHENPTTSQEKSKNENTEQEND 489 S + E + +KS+ ++TE+ ND Sbjct: 90 SAEKEEKKSEDNKKSEEDHTEEIND 114
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 32.5 bits (74), Expect = 0.026 Identities = 46/235 (19%), Positives = 89/235 (37%), Gaps = 27/235 (11%) Query: 1250 EQDYKIIKDFIDKVGENNINLNEQTLNEYFIR-HPENILGHLSLEKTRY---SFEINGEQ 1305 ++ ++ KD ++ N N T N F+ + N++ +K +Y S + Sbjct: 229 KEIVEVCKDLFKEIQSNKFEFNCYTKNNSFVGFYCLNLMSKEDYKKIQYDSSSKLLENFY 288 Query: 1306 IYKYELQALEDKSLDLSQALNQAIEKLPKNVYQYHKTTLKTNALIIDANNERYEEVQKLI 1365 K + L+ KS DL + + I + K + T K + + ++ +L+ Sbjct: 289 YAKDKSDRLKSKSSDLQKIVMNNINRCTKKDKILNNTLKKC------EDKDIFKLYGELL 342 Query: 1366 K----NLERG-ELVKWDNLYFQLEQNNEMGVFLKPTKTNSKVQDSRLKAYFKIKDALNDL 1420 L++G ++ N Y E + + + L KT S+ S K Y K+K + Sbjct: 343 TANIYALKKGLSHIELANYY--SENYDTVKITLDENKTPSQNVQSYYKKYNKLKKSEEAA 400 Query: 1421 ------TSAELSPLSS---DLELKSKRVRLNLVYDEFVKKFGYLNENKNRKDIKQ 1466 EL+ L S ++ + + E ++ GY+ K K K Sbjct: 401 NEQLLQNEEELNYLYSVLTNINNADNYDEIEEIKKELIET-GYIKFKKIYKSKKS 454
>SECA#SecA protein signature. Length = 901 Score = 29.8 bits (67), Expect = 0.039 Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 3/79 (3%) Query: 123 YKTEYFLVFESITSNVKSFFEKKKLEITTSINEELEESSKENKQENENSSNETHSNTSSN 182 YK E F +F ++ ++K ++ + EE+EE ++ + E E S+ Sbjct: 803 YKRESFSMFAAMLESLKYEVISTLSKVQVRMPEEVEELEQQRRMEAE---RLAQMQQLSH 859 Query: 183 KDKKNKFKKKTTFSTTSKR 201 +D + T ++ Sbjct: 860 QDDDSAAAAALAAQTGERK 878
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 29.0 bits (65), Expect = 0.044 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 3/36 (8%) Query: 51 TPKNILMIGSTGVGKTEIARRI---AKIMKLPFVKV 83 T +++ G +G GK +AR + K PFV + Sbjct: 159 TDLTLMITGESGTGKELVARALHDYGKRRNGPFVAI 194
>PF03944#delta endotoxin Length = 633 Score = 32.3 bits (73), Expect = 0.002 Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 3/95 (3%) Query: 68 LHHQEKLLNQCMLSQALKAMGDAELCVFLASVHDDLKGYEEFLSLCQKPHVLALSKIDTA 127 L E+ LNQ + + + A +AEL A+V + + + FL+ + L+++ Sbjct: 94 LRETERFLNQRLNTDTV-ARVNAELTGLQANVEEFNRQVDNFLNPNRNAVPLSITSSVNT 152 Query: 128 THKQVLQKLQEYQQYASQFLALVPLSAKKSQNLNV 162 + L +L ++Q Q L L+PL A+ + NL++ Sbjct: 153 MQQLFLNRLPQFQMQGYQLL-LLPLFAQAA-NLHL 185
>PF07201#Hypersensitivity response secretion protein HrpJ Length = 293 Score = 29.8 bits (67), Expect = 0.023 Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 15/76 (19%) Query: 277 APENSKEKLIEELIANSQLIANEEEREKKLLAEKEKQ--------EAELAKY--KLKDLE 326 S + EE+ E +E L K E ++ +Y K+ +LE Sbjct: 44 GTLQSIADMAEEVTF-----VFSERKELSLDKRKLSDSQARVSDVEEQVNQYLSKVPELE 98 Query: 327 NQKKLKALEAELKKKN 342 ++ + L + L Sbjct: 99 QKQNVSELLSLLSNSP 114
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 37.4 bits (86), Expect = 7e-04 Identities = 42/273 (15%), Positives = 95/273 (34%), Gaps = 34/273 (12%) Query: 638 KLLTPEAKKL--LEEAKESLKAYKDCVSQAKTEAEKKECEKLLT-PEAKKLLEEEAKESV 694 L PE +K + + +E ++ P ++ + Sbjct: 979 DLYNPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTE 1038 Query: 695 KAYLDCVSQAKTEAEKKECEKLLTPEAKKLLEEAKESVKAYKDCVSRARNEKEKKECEKL 754 + ++KT + ++ T + +++ +EAK +VKA A++ E KE + Sbjct: 1039 TVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTT 1098 Query: 755 LTPEAKKLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESVKAYLDCVSKARNE 814 T E + +++ AK E +K + V KV ++ S K + ++E Sbjct: 1099 ETKETATVEKEE------KAKVETEKTQEV--------PKVTSQVSPK-------QEQSE 1137 Query: 815 KEKKECEKLLTPEAKKLLEEAKESLKAYKDCVSQAKTEAEKKECEKLLTPEAKKLLEEEA 874 + + E + ++E + SQ T A+ ++ K + ++ + E Sbjct: 1138 TVQPQAEPARENDPTVNIKEPQ----------SQTNTTADTEQPAKETSSNVEQPVTEST 1187 Query: 875 KESVKAYLDCVSQAKTEAEKKECEKLLTPEAKK 907 + + + T A + + K Sbjct: 1188 TVNTGNSVVENPENTTPATTQPTVNSESSNKPK 1220 Score = 35.4 bits (81), Expect = 0.003 Identities = 39/274 (14%), Positives = 92/274 (33%), Gaps = 14/274 (5%) Query: 822 KLLTPEAKKL--LEEAKESLKAYKDCVSQAKTEAEKKECEKLLT-PEAKKLLEEEAKESV 878 L PE +K + + +E ++ P ++ + Sbjct: 979 DLYNPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTE 1038 Query: 879 KAYLDCVSQAKTEAEKKECEKLLTPEAKKLLEEAKESVKAYKDCVSRARNEKEKKECEKL 938 + ++KT + ++ T + +++ +EAK +VKA A++ E KE + Sbjct: 1039 TVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTT 1098 Query: 939 LTPEAKKLLEQQALDCLKNAKTDEERNECLKNIPQDLQKELLADMS--------VKAYKD 990 T E + +++ KT E + P+ Q E + + K+ Sbjct: 1099 ETKETATVEKEEKAKVET-EKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKE 1157 Query: 991 CVSKARNEKEKKECEKLLTPEAKKLLEEAKESLKAYKDCVSQAKTEAEKKECEKLLTPEA 1050 S+ + ++ K + ++ + E+ + V + + + E+ Sbjct: 1158 PQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTG--NSVVENPENTTPATTQPTVNSES 1215 Query: 1051 KKLLEEEAKESVKAYLDCVSQAKTEAEKKECEKL 1084 + + SV++ V A T + + L Sbjct: 1216 SNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVAL 1249 Score = 35.0 bits (80), Expect = 0.004 Identities = 29/158 (18%), Positives = 67/158 (42%), Gaps = 5/158 (3%) Query: 994 KARNEKEKKECEKLLTPEAKKLLEEAKESLKAYKDCVSQAKTEAEKKECEKLLTPEAKKL 1053 + NE+ + E + P A ++ + ++ ++KT EK E + T + Sbjct: 1011 PSNNEEIARVDEAPVPPPAPAT--PSETTETVAENSKQESKTV-EKNEQDATETTAQNRE 1067 Query: 1054 LEEEAKESVKAYLDC--VSQAKTEAEKKECEKLLTPEAKKLLEEAKESVKAYKDCVSRAR 1111 + +EAK +VKA V+Q+ +E ++ + + + E+AK + ++ Sbjct: 1068 VAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTS 1127 Query: 1112 NEKEKKECEKLLTPEAKKLLEQQALDCLKNAKTEADKK 1149 K+E + + P+A+ E +K +++ + Sbjct: 1128 QVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTT 1165 Score = 34.7 bits (79), Expect = 0.005 Identities = 29/168 (17%), Positives = 63/168 (37%), Gaps = 9/168 (5%) Query: 1006 KLLTPEAKKL--LEEAKESLKAYKDCVSQAKTEAEKKECEKLLT-PEAKKLLEEEAKESV 1062 L PE +K + + +E ++ P ++ + Sbjct: 979 DLYNPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTE 1038 Query: 1063 KAYLDCVSQAKTEAEKKECEKLLTPEAKKLLEEAKESVKAYKDCVSRARNEKEKKECEKL 1122 + ++KT + ++ T + +++ +EAK +VKA A++ E KE + Sbjct: 1039 TVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTT 1098 Query: 1123 LTPEAKKLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESVK 1170 T E + +++ AK E +K + V + + K E+V+ Sbjct: 1099 ETKETATVEKEE------KAKVETEKTQEVPKVTSQVSPKQEQSETVQ 1140 Score = 33.9 bits (77), Expect = 0.009 Identities = 31/155 (20%), Positives = 65/155 (41%), Gaps = 5/155 (3%) Query: 624 VSKARNEKEKKECEKLLTPEAKKLLEEAKESLKAYKDCVSQAKTEAEKKECEKLLTPE-A 682 SK + E+ E T + +++ +EAK ++KA A++ +E KE + T E A Sbjct: 1047 ESKTVEKNEQDATET--TAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETA 1104 Query: 683 KKLLEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLEEAKESVKAYKDCVSRA 742 EE+AK + + + K+E + + P+A+ E + K+ S+ Sbjct: 1105 TVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPAREN--DPTVNIKEPQSQT 1162 Query: 743 RNEKEKKECEKLLTPEAKKLLEQQALDCLKNAKTE 777 + ++ K + ++ + + N+ E Sbjct: 1163 NTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVE 1197
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 861 bits (2224), Expect = 0.0 Identities = 513/522 (98%), Positives = 515/522 (98%), Gaps = 1/522 (0%) Query: 1 MEQAFFKKIVGCFCLGYLFLSSVIEAAP-DIKNFNRGRVKVVNKKIAYLGDEKPITIWTS 59 M QAFFKKIVGCFCLGYLFLSS IEA DIKNFNRGRVKVVNKKIAYLGDEKPITIWTS Sbjct: 1 MGQAFFKKIVGCFCLGYLFLSSAIEAVALDIKNFNRGRVKVVNKKIAYLGDEKPITIWTS 60 Query: 60 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR 119 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR Sbjct: 61 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR 120 Query: 120 DYQEFLKTKKLIVDAPDSKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL 179 DYQEFLKTKKLIVDAPD KELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL Sbjct: 121 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL 180 Query: 180 ENLTNAMSNPQNLSNNKNLSEFIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA 239 ENLTNAMSNPQNLSNNKNLSE IKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA Sbjct: 181 ENLTNAMSNPQNLSNNKNLSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA 240 Query: 240 EEAVKQRAKDKINIKTDKSQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD 299 EEAV+QRAKDKI+IKTDKSQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD Sbjct: 241 EEAVRQRAKDKISIKTDKSQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD 300 Query: 300 NFASAYLTVKLEYPQRHEVSSVIEEELKKREEAKRQRELIKQENLNTTAYINRVMMASNE 359 NFASAYLTVKLEYPQRHEVSSVIEEELKKREEAKRQRELIKQENLNTTAYINRVMMASNE Sbjct: 301 NFASAYLTVKLEYPQRHEVSSVIEEELKKREEAKRQRELIKQENLNTTAYINRVMMASNE 360 Query: 360 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF 419 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF Sbjct: 361 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF 420 Query: 420 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK 479 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK Sbjct: 421 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK 480 Query: 480 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK 521 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK Sbjct: 481 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK 522
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 119 bits (300), Expect = 3e-35 Identities = 44/205 (21%), Positives = 74/205 (36%), Gaps = 10/205 (4%) Query: 27 KLNKANRTFKRAFYL---SMALNIAAVASIVMMMPLKKTDIFVYGIDRYTGEFKIVKRSD 83 KL A R+ K A+ + + AL A V ++ + PLK + +V +DR TGE I + Sbjct: 24 KLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIAAKLH 83 Query: 84 A-RQIVNSEAVVDSATSKFVSLLFGYSKNSLRDRKDQLMQYCDVSFQTQAMRMFNENIRQ 142 I EAV + +V G+ + + D +M Q + R + + Q Sbjct: 84 GDATITYDEAVRKYFLATYVRYREGWIAAAREEYFDAVMVMSARPEQDRWSRFYKTDNPQ 143 Query: 143 FVDKVRA-EAIISSNIQREKVKNSPLTRLTFFITIKITPDTMENYEYITKKQVTIYYDFA 201 + A + I + +F +T T TI Y Sbjct: 144 SPQNILANRTDVFVEI-KRVSFLGGNVAQVYFTKESVTGSNS----TKTDAVATIKYKVD 198 Query: 202 RGNSSQENLIINPFGFKVFDIQITD 226 S + + NP G++V + Sbjct: 199 GTPSKEVDRFKNPLGYQVESYRADV 223
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 31.3 bits (70), Expect = 0.005 Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 16/119 (13%) Query: 24 AINTALLPSEYKKLVALGFKKIKTFHQRHDEKEVTEEEKKFATKALREKLRNDRARAEQI 83 A+N AL+ +Y++ + K K D KE+ E++K EK + + +A++ Sbjct: 112 AVNFALMTRDYQEFL----KTKKLIVDAPDPKELEEQKKAL------EKEKEAKEQAQKA 161 Query: 84 QKNIEAFEKKNNSSIQKKAAKHKGLQELNETNANPLNDNPNSNSSTETKSNKDDNFDEM 142 QK+ K +++A L+ L +NP N + N N S K +++ D+M Sbjct: 162 QKD------KREKRKEERAKNRANLENLTNAMSNPQNLSNNKNLSELIKQQRENELDQM 214
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 32.9 bits (75), Expect = 0.008 Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 18/88 (20%) Query: 19 EVQKRQFQKIEELKADMQKGVNPFFKVLFDGGNRLFGFPETFIYSSI-------FILFVT 71 + K K+ EL+ +G+ +D F+ SI F + Sbjct: 301 DTAKAIKAKLAELQPFFPQGMK--VLYPYD--------TTPFVQLSIHEVVKTLFEAIML 350 Query: 72 IVLSVILF-QAYEPVLIVAIVIVLVALG 98 + L + LF Q LI I + +V LG Sbjct: 351 VFLVMYLFLQNMRATLIPTIAVPVVLLG 378
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 276 bits (708), Expect = 2e-96 Identities = 113/245 (46%), Positives = 161/245 (65%), Gaps = 2/245 (0%) Query: 1 MRFFIFLILICPLICPLMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLI 60 MR + + + L A + LP + S P + + + +T L P+++ Sbjct: 1 MRRLLSVAPVL-LWLITPLAFAQLPGIT-SQPLPGGGQSWSLPVQTLVFITSLTFIPAIL 58 Query: 61 LVMTSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMD 120 L+MTSFTR+I+VF LR ALGT PP Q+L+ L+L LTFFIM P + K Y +P+ + Sbjct: 59 LMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSE 118 Query: 121 KKISYTEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKTPNEVSLSVLIPAFMISE 180 +KIS EA EK A P +EFML+ TRE DL LF R+ N + P V + +L+PA++ SE Sbjct: 119 EKISMQEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVTSE 178 Query: 181 LKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTEN 240 LKTAFQIGF +++PFL+ID+VI+S+LMA+GMMM+PP I+LPFK+++F+LVDG+ LL + Sbjct: 179 LKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGS 238 Query: 241 LVASF 245 L SF Sbjct: 239 LAQSF 243
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 34.7 bits (79), Expect = 0.001 Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 8/100 (8%) Query: 473 KIALKNYSENKSAKEVVKEF---KFSSLKPKPTTETTAEMKEKETKEAIEKETKEA--IE 527 K KN + +E S++K T A+ ETKE ETKE +E Sbjct: 1049 KTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGS-ETKETQTTETKETATVE 1107 Query: 528 KETKEAIEKETKEAIEKETKENGTKEIQ--ETQPKETPTA 565 KE K +E E + + K T + K+ Q QP+ P Sbjct: 1108 KEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPAR 1147 Score = 34.3 bits (78), Expect = 0.002 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 6/90 (6%) Query: 475 ALKNYSENKSAKEVVKEFKFSSLKPKPTTETTAEMKE--KETKEAIEKETKEA----IEK 528 A + + A+ +E K + TETTA+ +E KE K ++ T+ Sbjct: 1031 ATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGS 1090 Query: 529 ETKEAIEKETKEAIEKETKENGTKEIQETQ 558 ETKE ETKE E +E E ++TQ Sbjct: 1091 ETKETQTTETKETATVEKEEKAKVETEKTQ 1120 Score = 33.1 bits (75), Expect = 0.004 Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 9/78 (11%) Query: 499 PKPTTETTAEMKEKETKEAIEKETKEAIEKETKEA-IEKETKEAIEKETKENG------- 550 P TTET AE ++E+K EK ++A E + + KE K ++ T+ N Sbjct: 1033 PSETTETVAENSKQESKTV-EKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSE 1091 Query: 551 TKEIQETQPKETPTALQE 568 TKE Q T+ KET T +E Sbjct: 1092 TKETQTTETKETATVEKE 1109
>cloacin#Cloacin signature. Length = 551 Score = 27.8 bits (61), Expect = 0.023 Identities = 27/133 (20%), Positives = 44/133 (33%), Gaps = 11/133 (8%) Query: 27 SDEDLAKMAGVVAP--QDIVDYTKELKMRMKKMPEDK--RKAFHKQLHEYATKNTDKMTV 82 ++ED+A+ A Q EL K + + K F++ H+ + Sbjct: 333 ANEDVARNQERQAKAVQVYNSRKSELDAANKTLADAIAEIKQFNRFAHDPMAGGHRMWQM 392 Query: 83 ADFEARQ-----KAIKEALKKGNMEDMDDDFGLRSCKHGKMHKHDKHGKKHDK--KHGKN 135 A +A++ + A E D D L S + K DK + Sbjct: 393 AGLKAQRAQTDVNNKQAAFDAAAKEKSDADAALSSAMESRKKKEDKKRSAENNLNDEKNK 452 Query: 136 HDKDHDDKDHDHH 148 K D HD+H Sbjct: 453 PRKGFKDYGHDYH 465
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 29.0 bits (65), Expect = 0.020 Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 8/64 (12%) Query: 136 LATYGAYTGISAAAGGTVLSSLGGALAWMSGGAISLGGGLALGSMALIGGLVAGPALAIL 195 LA GA+ G A +LSSL GA G + L + GP LAI Sbjct: 219 LAALGAWLGWQALPIVLLLSSLVGAFM---GIGLILLRNHHQSK-----PIPFGPYLAIA 270 Query: 196 GAVS 199 G ++ Sbjct: 271 GWIA 274
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 42.3 bits (99), Expect = 7e-06 Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 2/75 (2%) Query: 645 GNVFSQTGNSGQALIGAANTGR--RGSISGSKLESSNVDLSRSLTNLIVVQRGFQANSKA 702 ++ S GN L ++ T +S + S V+L NL Q+ + AN++ Sbjct: 472 ASLVSDIGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQV 531 Query: 703 VTTSDQILNTLLNLK 717 + T++ I + L+N++ Sbjct: 532 LQTANAIFDALINIR 546 Score = 39.6 bits (92), Expect = 5e-05 Identities = 11/35 (31%), Positives = 20/35 (57%) Query: 4 SLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSR 38 + + ++G+ A Q AL+ SNNI++ N G+ Sbjct: 3 LINNAMSGLNAAQAALNTASNNISSYNVAGYTRQT 37
>PF06580#Sensor histidine kinase Length = 349 Score = 27.5 bits (61), Expect = 0.022 Identities = 29/146 (19%), Positives = 52/146 (35%), Gaps = 22/146 (15%) Query: 8 YLMAVVFVVFVLLLWAMNVWVYRPLLAFMDNRQAEIKDSLAKIKTDNAQSVEIGHQIE-- 65 L + VV V +W++ +Y F + +QAEI AQ + + QI Sbjct: 117 ALSIIFNVVVVTFMWSL---LYFGWHFFKNYKQAEIDQWKMASMAQEAQLMALKAQINPH 173 Query: 66 ----------TLLKEAAEKRREMIAEAIQKATESYDAVIKQKENE---LSQEFEAFAKQL 112 L+ E K REM+ +E ++ L+ E L Sbjct: 174 FMFNALNNIRALILEDPTKAREML----TSLSELMRYSLRYSNARQVSLADELTVVDSYL 229 Query: 113 QNEKQVLKEQLQVQMPVFEDELNKRV 138 Q +++LQ + + ++ +V Sbjct: 230 QLASIQFEDRLQFENQINPAIMDVQV 255
>PF07675#Cleaved Adhesin Length = 1358 Score = 31.6 bits (71), Expect = 0.004 Identities = 30/105 (28%), Positives = 40/105 (38%), Gaps = 7/105 (6%) Query: 70 QISQVILKTQMPFLDLVPSNLGLAGFEKTFYDSQDENKRGELMLKNALESVV---GLYDY 126 VI T F SNL A FE + D + ++ VV G+YDY Sbjct: 414 TFGSVIPATGPLFTGTASSNLYSANFEYLTPANADPVVTTQNIIVTGQGEVVIPGGVYDY 473 Query: 127 IIIDSPPALGPLTINSLSAAHSVIIPIQCEFFALEGTKLLLNTIR 171 I + PA G + I A P + + FA E K T+R Sbjct: 474 CITNPEPASGKMWI----AGDGGNQPARYDDFAFEAGKKYTFTMR 514
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 32.2 bits (73), Expect = 0.002 Identities = 12/33 (36%), Positives = 20/33 (60%) Query: 70 EPEVQILKDLKPDFIVVVAYGKILPKEVLSIAP 102 EP +++L ++KP F+V A P+ + IAP Sbjct: 86 EPNLELLTEMKPSFMVWSAGYGPSPEMLARIAP 118
>PF01540#Adhesin lipoprotein Length = 475 Score = 30.9 bits (69), Expect = 0.022 Identities = 58/252 (23%), Positives = 114/252 (45%), Gaps = 32/252 (12%) Query: 390 SKSSGNLKELENQIIENIKKFDEQITYWQEKTKLEEQLKNREKERKKSQNIIDTFTDEDY 449 K S ++ + I I K + + +Q K ++QL + + K + TF + Sbjct: 253 LKLSEKIQSFADTIALTITKLERK---FQIDEKFKKQLISTIELLNKKSVEVKTFATVNT 309 Query: 450 LDKREKLQENHKALIDLKQSKEVVLTFIEKLKRVVNFESKENMEEKNSYNKVYNQLKQNI 509 + K L E L+ KE +++EK+ E E K +++K ++K Sbjct: 310 IKKDFLLSE-------LESFKEFNTSWLEKIV-------SEWEEVKKAWSKELAEIKAED 355 Query: 510 CKELEEIDKNIKNGCFDSDDKNIEKLEVKQQTLRQEIGEFLKEKGVIDENIGDLERANCQ 569 K+L E ++ IKNG + N E E+ +T+ + I E L++K ID + + Q Sbjct: 356 DKKLAEENQKIKNGVEELKKINNEAFEL-SKTVNKTIAE-LEKKFKIDVSFKE------Q 407 Query: 570 LADIEKEITDLKRKIEE---ITNKIKGFSWEDIDKDIENFENQIEEKLKEINSVFKEISK 626 L + ++ D R+I+E +T+ +GF+ ++E+F+ + S + + + Sbjct: 408 LKNFADDLLDKSRQIDEFTTVTSTQEGFTLA----ELESFKEITTTWFNGMKSEWARVQE 463 Query: 627 NHKEEVKPITIK 638 K+++K I+ K Sbjct: 464 AWKDQLKEISAK 475
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 43.7 bits (103), Expect = 1e-06 Identities = 29/195 (14%), Positives = 72/195 (36%), Gaps = 19/195 (9%) Query: 27 QIELENQSRF-LAQQKEFEKEVKEKRAQYQSHFKMLEQKEEALKEQEREQKTKFDDAVKQ 85 +++L ++ F ++E + + Q+ + QKE L ++ E+ T + Sbjct: 167 ELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRY 226 Query: 86 ASALALQDERAKIIEEARKNAFLEQQKGLELLQKELDEKSKQVQELHQKEAEIERLKREN 145 + ++ R + + LE + + E EL ++++E+++ E Sbjct: 227 ENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQ-ENKYVEAV---NELRVYKSQLEQIESEI 282 Query: 146 NEAESRLKAENEKKLNEKLETERERIEKALHEKNELKFKQQEEQLEMLRNELKNAQRKAE 205 A+ + + NE L+ R+ + +L + + +A Sbjct: 283 LSAKEEYQLVTQLFKNEILDKLRQTTDNI---------GLLTLELAKNEERQQASVIRAP 333 Query: 206 LSSQQFQGEVQELAI 220 +S +VQ+L + Sbjct: 334 VS-----VKVQQLKV 343
>PF05844#YopD protein Length = 295 Score = 25.0 bits (54), Expect = 0.035 Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 1/65 (1%) Query: 10 SVLKANNPHFDKIFEKHNQLDDDIKTAEQQNASDAEVSHMKKQKLKLKDEIHSMIIEYRE 69 L+A F+ + I++ Q + +V + Q ++E+++ I + + Sbjct: 197 VALRAAGRAFESRNGALQVANTVIQSFVQMANASVQVRQGESQASAREEEVNATIGQ-SQ 255 Query: 70 KQKSE 74 KQK E Sbjct: 256 KQKVE 260
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 36.6 bits (84), Expect = 4e-05 Identities = 19/98 (19%), Positives = 36/98 (36%), Gaps = 3/98 (3%) Query: 38 EKDSASISQNLEKSEIERQNSTLSPKQEETNTTTTATEENPTKDPPLPLETATQKQENKQ 97 EK+ + + + E+ + S +SPKQE++ T E P + Q Sbjct: 1107 EKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPAR---ENDPTVNIKEPQSQTN 1163 Query: 98 ETKQEQEKENESKQNSASPIQNHQKTPTTPTIGKKPLE 135 T ++ E+ N P+ T ++ + P Sbjct: 1164 TTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPEN 1201 Score = 28.5 bits (63), Expect = 0.020 Identities = 22/136 (16%), Positives = 45/136 (33%), Gaps = 15/136 (11%) Query: 48 LEKSEIERQNSTLSPKQEETNTTTTATEENPTKD-------------PPLPLETATQKQE 94 L E+E++N T+ T A + + PP P + + Sbjct: 980 LYNPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTET 1039 Query: 95 NKQETKQEQE--KENESKQNSASPIQNHQKTPTTPTIGKKPLEYKVAANSVNVRAFPSTK 152 + +KQE + ++NE + + +VA + + +T+ Sbjct: 1040 VAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTE 1099 Query: 153 GKILGSLAKNKSVKVL 168 K ++ K + KV Sbjct: 1100 TKETATVEKEEKAKVE 1115
>SECGEXPORT#Protein-export SecG membrane protein signature. Length = 110 Score = 48.8 bits (116), Expect = 5e-10 Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 3/84 (3%) Query: 1 MTSALLGLQIVLAVLIVVVVLLQ--KSSSIGLGAYSGSNESLFGAKGPASFMAKLTMFLG 58 M ALL + +++A+ +V +++LQ K + +G +G++ +LFG+ G +FM ++T L Sbjct: 1 MYEALLVVFLIVAIGLVGLIMLQQGKGADMGASFGAGASATLFGSSGSGNFMTRMTALLA 60 Query: 59 LLFVANTIALGYFYNKEYGKSILD 82 LF ++ LG N + Sbjct: 61 TLFFIISLVLGNI-NSNKTNKGSE 83
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 223 bits (571), Expect = 3e-78 Identities = 65/148 (43%), Positives = 94/148 (63%) Query: 4 IGIYPGTFDPVTNGHIDIIHRSSELFEKLIVAVAHSSAKNPMFSLKERLEMIQLATKSFK 63 IYPG+FDP+T GH+DII R LF+++ VAV + K PMFS++ERLE I A Sbjct: 2 NAIYPGSFDPITFGHLDIIERGCRLFDQVYVAVLRNPNKQPMFSVQERLEQIAKAIAHLP 61 Query: 64 NVECVAFEGLLANLAKEYHCKVLVRGLRVVSDFEYELQMGYANKSLNHELETLYFMPTLQ 123 N + +FEGL N A++ ++RGLRV+SDFE ELQM NK+L +LET++ + + Sbjct: 62 NAQVDSFEGLTVNYARQRQAGAILRGLRVLSDFELELQMANTNKTLASDLETVFLTTSTE 121 Query: 124 NAFISSSIVRSIIAHKGDASHLVPKEIH 151 +F+SSS+V+ + G+ H VP + Sbjct: 122 YSFLSSSLVKEVARFGGNVEHFVPSHVA 149
>ARGDEIMINASE#Bacterial arginine deiminase signature. Length = 409 Score = 25.9 bits (57), Expect = 0.041 Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 8/60 (13%) Query: 7 VHIHNLVFETILGILEFERLKPQKISVNLDLFYTQLPN-----KAYLDYIKIQELIQKMM 61 +I +L+ E ++ + L+ + IS + + K Y + I +I KM+ Sbjct: 70 EYIEDLISEVLVSSVA---LENKFISQFILEAEIKTDFTINLLKDYFSSLTIDNMISKMI 126
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 35.2 bits (81), Expect = 5e-04 Identities = 9/51 (17%), Positives = 24/51 (47%), Gaps = 4/51 (7%) Query: 125 TVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALEKHKKVVLV 175 +Y + ++ Q+D ++ G +G GK + A+ ++ ++ V + Sbjct: 148 EIYRVLARLMQTDLT----LMITGESGTGKELVARALHDYGKRRNGPFVAI 194
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 112 bits (282), Expect = 5e-29 Identities = 75/401 (18%), Positives = 156/401 (38%), Gaps = 29/401 (7%) Query: 54 KKPPESVLKNTLALDFCLNKFTKNAKILQANIIDNDRILEITGAKDLAYKSENFILRLEM 113 K P + + N N I + L + ++ ++ +N + L + Sbjct: 170 KLNPFDFSYDMIENFTKENSLQLNDNIFSKIFTGVSKTL----SSEICFRLKNNSIDLSL 225 Query: 114 IPKKANLMILDQEKCVIEA--FRFNDRVAKNDILGALPPN-IYEHQEEDLDFKGLLDILE 170 K + + I++ F FN N +G N + + + + + +LE Sbjct: 226 SNLKEIVEVCKDLFKEIQSNKFEFNCYTKNNSFVGFYCLNLMSKEDYKKIQYDSSSKLLE 285 Query: 171 KDFLSYQHKE-LEHKKNQIIKRLNTQKERLKEKLEKLEDPKNLQLEAKELQTQAQLLLTY 229 + + + L+ K + + K + R +K + L + + + +LL Sbjct: 286 NFYYAKDKSDRLKSKSSDLQKIVMNNINRCTKKDKILNNTLKKCEDKDIFKLYGELLTAN 345 Query: 230 QHLINRHESRVVLKDFED---KERAIEIDKSIPLNAFINKKFTLSKKKKQKSQFLYLEEE 286 + + + S + L ++ I +D++ + + + K K+ + + Sbjct: 346 IYALKKGLSHIELANYYSENYDTVKITLDENKTPSQNVQSYYKKYNKLKKSEEAANEQLL 405 Query: 287 NLKEKIAFKENQINYVKGA---------KEESVLEMFM---PVKNSKIKRPMSGYEVLYY 334 +E++ + + + + A K+E + ++ + SK + + Sbjct: 406 QNEEELNYLYSVLTNINNADNYDEIEEIKKELIETGYIKFKKIYKSKKSKTSKPMHFISK 465 Query: 335 KDFKIGLGKNQKENIKL-LQDARANDLWMHVRDIPGSHLIVFCQKNTPKDEVIMELAKML 393 I +GKN +N L L+ A +D+W H ++IPGSH+IV + P + ++E A + Sbjct: 466 DGIDIYVGKNNIQNDYLTLKFANKHDIWFHTKNIPGSHVIVKNIMDIP-ESTLLEAANLA 524 Query: 394 IKMQKDAFNS-YEIDYTQRKFVKIIKGAN---VIYSKYRTI 430 K +S +DYT+ K VK GA VIYS +TI Sbjct: 525 AYYSKSQNSSNVPVDYTEVKNVKKPNGAKPGMVIYSTNQTI 565 Score = 33.7 bits (77), Expect = 0.001 Identities = 20/92 (21%), Positives = 48/92 (52%), Gaps = 5/92 (5%) Query: 46 NVPYIGLSKKPPESVLKNTLALDFCLNKFTKNAKILQANIIDNDRI--LEITGAKDLAYK 103 N P I L+ + +K + L K+ NAKI+ + I+ DRI ++ +L + Sbjct: 55 NYPRIHLTDLTKPNPIKAPMFCMV-LRKYISNAKIVDIHQINQDRIVVIDFESTDELGFN 113 Query: 104 SENFILRLEMIPKKANLMILD-QEKCVIEAFR 134 S + L +E++ + +N+ ++ ++ ++++ + Sbjct: 114 SI-YSLIIEIMGRHSNMTLIRKRDNIIMDSIK 144
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 27.4 bits (60), Expect = 0.032 Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 1 MSEPLDTLNKDKQAMSEAIKKDIEKDKENLARVEADKKVKADESEKGYERDDDKKAEKLD 60 MS P + N + +SE IK+ E + + + R+E ++ + K E + K+AE+ Sbjct: 187 MSNPQNLSNN--KNLSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQAEEAV 244 Query: 61 KEIAKDKASPNDDK 74 ++ AKDK S DK Sbjct: 245 RQRAKDKISIKTDK 258
>FLAGELLIN#Flagellin signature. Length = 507 Score = 284 bits (728), Expect = 3e-92 Identities = 130/519 (25%), Positives = 221/519 (42%), Gaps = 18/519 (3%) Query: 2 SFRINTNIAALTSHAVGVQNNRDLSSSLEKLSSGLRINKAADDSSGMAIADSLRSQSANL 61 + INTN +L + ++ LSS++E+LSSGLRIN A DD++G AIA+ S L Sbjct: 1 AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60 Query: 62 GQAIRNANDAIGMVQTADKAMDEQIKILDTIKTKAVQAAQDGQTLESRRALQSDIQRLLE 121 QA RNAND I + QT + A++E L ++ +VQA + +++Q +IQ+ LE Sbjct: 61 TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120 Query: 122 ELDNIANTTSFNGQQMLSGSFSNKEFQIGAYSNTTVKASIGSTSSDKIGHVRMETSSFSG 181 E+D ++N T FNG ++LS + Q+GA T+ + +G + Sbjct: 121 EIDRVSNQTQFNGVKVLSQDN-QMKIQVGANDGETITIDLQKIDVKSLGLDGFNVN---- 175 Query: 182 AGMLASAAAQNLTEVGLNFKQVNGVNDYKIETVRISTSAGTGIGALSEIINRFSNTLGVR 241 + ++ +FK V G + Y + + +G + + V Sbjct: 176 -----GPKEATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVN 230 Query: 242 ASYNVMATG----GTPVQSGTVRELTINGVEIGTVNDVHKNDADGRLTNAINSVKDRTGV 297 A+ + T T V + T E + K +G T V Sbjct: 231 AANGQLTTDDAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGD-TFDYKGVTFTIDT 289 Query: 298 EASLDIQGRINLHSIDGRAISVHAASASGQVFGGGNFAGISGTQHAVIGRLTLTRTDARD 357 + D G+++ +I+G +++ A + S D + Sbjct: 290 KTGNDGNGKVST-TINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKT 348 Query: 358 IIVSGVNFSHVGFHSAQGVAEYTVNLRAVRGIFDANVASAAGANANGAQAETNSQGIGAG 417 S ++ +G ++ TVN + + AG + + + Sbjct: 349 KNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINE 408 Query: 418 --VTSLKGAMIVMDMADSARTQLDKIRSDMGSVQMELVTTINNISVTQVNVKAAESQIRD 475 + K + DSA +++D +RS +G++Q + I N+ T N+ +A S+I D Sbjct: 409 DAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIED 468 Query: 476 VDFAEESANFSKYNILAQSGSFAMAQANAVQQNVLRLLQ 514 D+A E +N SK IL Q+G+ +AQAN V QNVL LL+ Sbjct: 469 ADYATEVSNMSKAQILQQAGTSVLAQANQVPQNVLSLLR 507
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 30.6 bits (69), Expect = 0.025 Identities = 26/88 (29%), Positives = 32/88 (36%), Gaps = 26/88 (29%) Query: 192 TLDAYFEPHLEAQLISYKGNKLK-----AQELIDEKKAQ--------------------- 225 TLD P Q K NKLK A E + + + + Sbjct: 372 TLDENKTPSQNVQSYYKKYNKLKKSEEAANEQLLQNEEELNYLYSVLTNINNADNYDEIE 431 Query: 226 EIKNELEKESYIISSIVKKSKKSPTPPP 253 EIK EL + YI + KSKKS T P Sbjct: 432 EIKKELIETGYIKFKKIYKSKKSKTSKP 459
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 32.7 bits (74), Expect = 0.003 Identities = 26/136 (19%), Positives = 52/136 (38%), Gaps = 6/136 (4%) Query: 163 ELANSQIKAEQERQKTEQERQKTNKSGIELEQQRQKAEQEKQKTI-NTQRDLIKEQKDFI 221 ++ AE +Q+++ + + Q R+ A++ K NTQ + + + Sbjct: 1033 PSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSET 1092 Query: 222 KET-EQNCQEKHGQLFIKKTRIKTGITTGIAIEIEAECKTPKPTKTNQTPIQPKHLP--- 277 KET +E +K +++T T + + ++T Q +P Sbjct: 1093 KETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPT 1152 Query: 278 -NSKQPHSQRGSKAQE 292 N K+P SQ + A Sbjct: 1153 VNIKEPQSQTNTTADT 1168
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 294 bits (753), Expect = 6e-92 Identities = 104/441 (23%), Positives = 184/441 (41%), Gaps = 67/441 (15%) Query: 388 DLEHMNSFKEGEILVTDN-TDPDWEPCMKK-ASAVITNRGGRTCHAAIVAREIGVPAIVG 445 + + + E +++ ++ T D K+ T+ GGRT H+AI++R + +PA+VG Sbjct: 146 ETGSLATIAEETVIIAEDLTPSDTAQLNKQFVKGFATDIGGRTSHSAIMSRSLEIPAVVG 205 Query: 446 VSGATDSLYTGMEITVSCAEGE---------EGYVYAGIYEHEIERVELSNMQETQT--- 493 T+ + G + V EG E ++ E + + + Sbjct: 206 TKEVTEKIQHGDMVIVDGIEGIVIVNPTEEEVKAYEEKRAAFEKQKQEWAKLVGEPSTTK 265 Query: 494 -----KIYINIGNPEKAFSFSQLPNHGVGLARMEMIILNQIKAHPLALVDLHHKKSVKEK 548 ++ NIG P+ G+GL R E + +++ + P Sbjct: 266 DGAHVELAANIGTPKDVDGVLANGGEGIGLYRTEFLYMDRDQ-LPTE------------- 311 Query: 549 NEIENLMAGYANPKDFFVKKIAEGIGMISAAFYPKPVIVRTSDFKSNEYMRMLGGSSYEP 608 E Y K++ + KPV++RT D ++ + L P Sbjct: 312 ---EEQFEAY--------KEVVQ-------RMDGKPVVIRTLDIGGDKELSYL----QLP 349 Query: 609 NEENPMLGYRGASRYYSESYNEAFSWECEALALVREEMGLTNMKVMIPFLRTIEEGKKVL 668 E NP LG+R + F + AL N+KVM P + T+EE ++ Sbjct: 350 KELNPFLGFRAIRLCLE--KQDIFRTQLRALL---RASTYGNLKVMFPMIATLEELRQAK 404 Query: 669 EILRKNNLESGKNG------LEIYIMCELPVNVILADDFLSLFDGFSIGSNDLTQLTLGV 722 I+++ + G +E+ IM E+P + A+ F D FSIG+NDL Q T+ Sbjct: 405 AIMQEEKDKLLSEGVDVSDSIEVGIMVEIPSTAVAANLFAKEVDFFSIGTNDLIQYTMAA 464 Query: 723 DRDSELVSHVFDERNEAMLKMFKKAIEACKRHNKYCGICGQAPSDYPEVTEFLVKEGITS 782 DR +E VS+++ + A+L++ I+A K+ G+CG+ D L+ G+ Sbjct: 465 DRMNERVSYLYQPYHPAILRLVDMVIKAAHSEGKWVGMCGEMAGD-EVAIPLLLGLGLDE 523 Query: 783 ISLNPDSVIPTWNAVAKLEKE 803 S++ S++P + + KL KE Sbjct: 524 FSMSATSILPARSQLLKLSKE 544
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 149 bits (377), Expect = 3e-49 Identities = 39/140 (27%), Positives = 75/140 (53%), Gaps = 1/140 (0%) Query: 5 EILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEEFADMFDDLAERIVQLGHH 64 L ++ +L+ K+H FHW VKG FF +H+ EE+Y+ A+ D +AER++ +G Sbjct: 15 NSLNTQLSNWFLLYSKLHRFHWYVKGPHFFTLHEKFEELYDHAAETVDTIAERLLAIGGQ 74 Query: 65 PLVTLTEALKLTRVKEETKTSFHSKDIFKEILEDYKHLEKEFKELSNTAEKEGDKVTVTY 124 P+ T+ E + + + + + ++ + ++ DYK + E K + AE+ D T Sbjct: 75 PVATVKEYTEHASITDGGNET-SASEMVQALVNDYKQISSESKFVIGLAEENQDNATADL 133 Query: 125 ADDQLAKLQKSIWMLQAHLA 144 + +++K +WML ++L Sbjct: 134 FVGLIEEVEKQVWMLSSYLG 153
>PF06580#Sensor histidine kinase Length = 349 Score = 30.2 bits (68), Expect = 0.014 Identities = 10/71 (14%), Positives = 25/71 (35%), Gaps = 13/71 (18%) Query: 281 IVLQNFLYNAIDAIEALEESEQ-GQVKIEAFIQNEFIVFTIIDNGKEVENKSALFEPFET 339 +++Q + N I + + Q G++ ++ N + + + G + Sbjct: 258 MLVQTLVENGI--KHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTK------- 308 Query: 340 TKLKGNGLGLA 350 + G GL Sbjct: 309 ---ESTGTGLQ 316
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 361 bits (928), Expect = e-126 Identities = 120/345 (34%), Positives = 192/345 (55%), Gaps = 26/345 (7%) Query: 19 AEKIGDIASVVGVRDNQLIGYGLVIGLNGTGDK-SGSKFTMQSISNMLESVNVKISADDI 77 +I DIAS+ RDNQLIGYGLV+GL GTGD S FT QS+ ML+++ + Sbjct: 28 TSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDSLRSSPFTEQSMRAMLQNLGITTQGGQS 87 Query: 78 KSKNVAAVMITASLPPFARQGDKIDVQISSIGDAKSIQGGTLVMTPLNAVDGNIYALAQG 137 +KN+AAVM+TA+LPPFA G ++DV +SS+GDA S++GG L+MT L+ DG IYA+AQG Sbjct: 88 NAKNIAAVMVTANLPPFASPGSRVDVTVSSLGDATSLRGGNLIMTSLSGADGQIYAVAQG 147 Query: 138 AITSGNSS-----------NLLSAHIINGATIEREVSYDLFHKNAMVLSLKNPNFKNAIQ 186 A+ S SA + NGA IERE+ +VL L+NP+F A++ Sbjct: 148 ALIVNGFSAQGDAATLTQGVTTSARVPNGAIIERELPSKFKDSVNLVLQLRNPDFSTAVR 207 Query: 187 VQNTLNKV----FGNKVAIALDPKTIQITRPERFSMVEFLALVQEIPINYSAKNKIIVDE 242 V + +N +G+ +A D + I + +P + +A ++ + + K++++E Sbjct: 208 VADVVNAFARARYGDPIAEPRDSQEIAVQKPRVADLTRLMAEIENLTVETDTPAKVVINE 267 Query: 243 KSGTIVSGVDIVVHPIVVTSQDITLKITKEP--------LNDSKNTQDLDNNMSLDTAHN 294 ++GTIV G D+ + + V+ +T+++T+ P Q + M++ Sbjct: 268 RTGTIVIGADVRISRVAVSYGTLTVQVTESPQVIQPAPFSRGQTAVQPQTDIMAMQEGSK 327 Query: 295 TLSSNGKNITIAGVVKALQKIGVSAKGMVSILQALKKSGAISAEM 339 G ++ +V L IG+ A G+++ILQ +K +GA+ AE+ Sbjct: 328 VAIVEGPDLR--TLVAGLNSIGLKADGIIAILQGIKSAGALQAEL 370
>SECA#SecA protein signature. Length = 901 Score = 29.8 bits (67), Expect = 0.028 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%) Query: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRG 320 +V T + ++++ + L K L+ + A+I+A A V +AT++A RG Sbjct: 453 LVGTISIEKSELVSNELTKAGIKHNVLNAKFHANE--AAIVAQAGYPAAVTIATNMAGRG 510 Query: 321 LDI 323 DI Sbjct: 511 TDI 513
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 31.3 bits (71), Expect = 0.009 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 7/50 (14%) Query: 30 VAIVGESGSGKSSIANIIMRLNPR----FKPHNGEVLFETTNLLKESEEF 75 + I GESG+GK +A + R F N + L ESE F Sbjct: 163 LMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRD---LIESELF 209
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 551 bits (1420), Expect = 0.0 Identities = 179/582 (30%), Positives = 294/582 (50%), Gaps = 66/582 (11%) Query: 11 VDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFERLDSSDNALIL 70 +++ +L +I LI AG A++V ++L+ K DY LF L D I+ Sbjct: 13 LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWA-KTPDYR-----TLFSNLSDQDGGAIV 66 Query: 71 QHLQQNQIPYKILKDD-TILIPKDKVYEERITLASQGIPKTSKVGFEIFDTKDFGATDFD 129 L Q IPY+ I +P DKV+E R+ LA QG+PK VGFE+ D + FG + F Sbjct: 67 AQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKFGISQFS 126 Query: 130 QNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLKLKPDMKLS 189 + + RA+EGEL+RTIE+L P+ A VH+A+PK S+FV ++ PSASV + L+P L Sbjct: 127 EQVNYQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALD 186 Query: 190 PTQILGIKNLIAAAVPKLTTENVKIVNENGESIGEGDILENSKELALEQLRYKQNFENIL 249 QI + +L+++AV L NV +V+++G + + + + ++L QL++ + E+ + Sbjct: 187 EGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNT--SGRDLNDAQLKFANDVESRI 244 Query: 250 ENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNN-----VVRSEQNLEEKKE 304 + +I IL+PIVG N V A+V A+ DF+ K+ T+E + PN +RS Q ++ Sbjct: 245 QRRIEAILSPIVGNGN-VHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQV 303 Query: 305 GAPKKQVGGVPGVVSN-IGPVQGLKDNKEPEKYEKSQN---------------------- 341 GA GGVPG +SN P P + +QN Sbjct: 304 GAGYP--GGVPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRSTQRNE 361 Query: 342 TTNYEVGKTISEIKGEFGTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLKKINAL 401 T+NYEV +TI K G + RL+ AVVV+ K L DG + PL+ + +K+I L Sbjct: 362 TSNYEVDRTIRHTKMNVGDIERLSVAVVVNYK---TLADG----KPLPLTADQMKQIEDL 414 Query: 402 VKQAIGYNQNRGDDVAVSNFEFNPMAPMLDNATLSEKIMHKTQKVLGSFTPLIKYILVFI 461 ++A+G++ RGD + V N F+ + T E + Q + +++LV + Sbjct: 415 TREAMGFSDKRGDTLNVVNSPFSAVDN-----TGGELPFWQQQSFIDQLLAAGRWLLVLV 469 Query: 462 VLFIFYKKVIVPFSERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNA 521 V +I ++K + P R +E ++ + E + E L+K L+++ +Q Sbjct: 470 VAWILWRKAVRPQLTRRVEEAKAAQEQAQVRQETEEAVEVRLSKDEQLQQRRANQ----- 524 Query: 522 TFSEEEVRYEIVLEKIRGTLKERPDEIAMLFKLLIKDEISSD 563 + E++ ++IR E D + L+I+ +S+D Sbjct: 525 -----RLGAEVMSQRIR----EMSDNDPRVVALVIRQWMSND 557
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 347 bits (893), Expect = e-121 Identities = 121/338 (35%), Positives = 208/338 (61%), Gaps = 4/338 (1%) Query: 8 KQKAQLDELSMSEKIAILLIQVGEDATGEILRHLDIDSITEISKQIVQLNGTDKQIGAAV 67 K+ + L+ +K AILL+ +G + + ++ ++L + I ++ +I +L ++ V Sbjct: 7 KEILDVSALTGKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKDNV 66 Query: 68 LEEFFAIFQSNQYINTGGLEYARELLTRTLGSEEARKVMDKLTKSLQTQKNFAYLGKIKP 127 L EF + + ++I GG++YARELL ++LG+++A +++ L +LQ+ + F ++ + P Sbjct: 67 LLEFKELMMAQEFIQKGGIDYARELLEKSLGTQKAVDIINNLGSALQS-RPFEFVRRADP 125 Query: 128 QQLADFIINEHPQTIALILAHMEAPNAAETLSYFPDEMKAEISIRMANLGEISPQVVKRV 187 + +FI EHPQTIALIL++++ A+ LS P E++ ++ R+A + SP+VV+ V Sbjct: 126 ANILNFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVREV 185 Query: 188 STVLENKLESLTSYK-IEVGGLRAVAEIFNRLGQKSAKTTLARIESVDNKLAGAIKEMMF 246 VLE KL SL+S GG+ V EI N +K+ K + +E D +LA IK+ MF Sbjct: 186 ERVLEKKLASLSSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEIKKKMF 245 Query: 247 TFEDISKLDNFAIREILKVADKKDLSLALKTSTQDLTDKFLNNMSSRAAEQFVEEMQYLG 306 FEDI LD+ +I+ +L+ D ++L+ ALK+ + +K NMS RAA E+M++LG Sbjct: 246 VFEDIVLLDDRSIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDMEFLG 305 Query: 307 AVKIKDVDVAQRKIIEIVQSLQEKG--VIQTGEEEDVI 342 + KDV+ +Q+KI+ +++ L+E+G VI G EEDV+ Sbjct: 306 PTRRKDVEESQQKIVSLIRKLEEQGEIVISRGGEEDVL 343 Score = 30.9 bits (70), Expect = 0.006 Identities = 20/103 (19%), Positives = 41/103 (39%), Gaps = 3/103 (2%) Query: 4 KLTPKQKAQLDELSMSEKIAILLIQVGEDATGEILRHLDIDSITEISKQIVQLNGTDKQI 63 + P + + IA++L + IL L + T ++++I ++ T ++ Sbjct: 122 RADPANILNFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEV 181 Query: 64 GAA---VLEEFFAIFQSNQYINTGGLEYARELLTRTLGSEEAR 103 VLE+ A S Y + GG++ E++ E Sbjct: 182 VREVERVLEKKLASLSSEDYTSAGGVDNVVEIINMADRKTEKF 224
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 36.7 bits (84), Expect = 5e-05 Identities = 52/228 (22%), Positives = 103/228 (45%), Gaps = 21/228 (9%) Query: 28 NLPPKT-NPNNAFLETPSPQEPLEKKAIENDLIDCLLKKTDELSSHLVKLQMQFEKAQEE 86 NLP KT P++ P E + E +I+ + L L +LQMQ A E+ Sbjct: 4 NLPWKTWTPDDL---APPQAEFVPIVEPEETIIE---EAEPSLEQQLAQLQMQ---AHEQ 54 Query: 87 S-KALIENAKNDGYKIGFKEGEEKMRNELTHSVNEEKNQLLHAITALDEKMKKSEDHLMA 145 +A I + G+K G++EG + L + E K+Q + + + + + L A Sbjct: 55 GYQAGIAEGRQQGHKQGYQEG---LAQGLEQGLAEAKSQQAPIHARMQQLVSEFQTTLDA 111 Query: 146 LE----KELSAIAIDIAKEVILKEVEDNSQKVALALAEELLKNVLDATDIHLKVNPLDYP 201 L+ L +A++ A++VI + ++ + + + L + L + L+V+P D Sbjct: 112 LDSVIASRLMQMALEAARQVIGQTPTVDNSALIKQIQQLLQQEPLFSGKPQLRVHPDDLQ 171 Query: 202 YLNEHLQNASKI---KLESNEAISKGGVMITSSNGSLDGNLMERFKTL 246 +++ L + +L + + GG +++ G LD ++ R++ L Sbjct: 172 RVDDMLGATLSLHGWRLRGDPTLHPGGCKVSADEGDLDASVATRWQEL 219
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 140 bits (354), Expect = 2e-37 Identities = 99/437 (22%), Positives = 174/437 (39%), Gaps = 85/437 (19%) Query: 3 NIRNFSIIAHIDHGKSTLADCLIAECNAIS---NREMTSQVMDTMDIEKERGITIKAQSV 59 I N ++AH+D GK+TL + L+ AI+ + + + D +E++RGITI+ Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 60 RLNYTLKGEDYVLNLIDTPGHVDFSYEVSRSLCSCEGALLVVDATQGVEAQTIANTYIAL 119 + E+ +N+IDTPGH+DF EV RSL +GA+L++ A GV+AQT + Sbjct: 62 SFQW----ENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALR 117 Query: 120 DNHLEILPVINKIDLPNANVVEVKQDIEDTIGIDCSSANEVSAKARLGIKD--------- 170 + + INKID ++ V QDI++ + + +V + + + Sbjct: 118 KMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDT 177 Query: 171 -------LLEKIITTIPAPSGDFNAPLKALIYD-------------------------SW 198 LLEK ++ + + ++ + Sbjct: 178 VIEGNDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNK 237 Query: 199 F--------------------DNYLGALALVRIMDGSINTEQEILVMGTGKKHGVLGLYY 238 F LA +R+ G ++ + + K + +Y Sbjct: 238 FYSSTHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKI-KITEMYT 296 Query: 239 PNPLKKIPTKSLECGEIGIV---SLGLKSVTDIAVGDTLTDAKNPTPKPIEGFMPAKPFV 295 + GEI I+ L L SV +GDT P + IE P + Sbjct: 297 SINGELCKIDKAYSGEIVILQNEFLKLNSV----LGDTKLL---PQRERIEN---PLPLL 346 Query: 296 FAGLYPIETDRFEDLREALLKLQLNDCALNFEPESSVALGFGFRVGFLGLLHMEVIKERL 355 + P + + E L +ALL++ +D L + +S+ + FLG + MEV L Sbjct: 347 QTTVEPSKPQQREMLLDALLEISDSDPLLRYYVDSATH---EIILSFLGKVQMEVTCALL 403 Query: 356 EREFGLNLIATAPTVVY 372 + ++ + + PTV+Y Sbjct: 404 QEKYHVEIEIKEPTVIY 420 Score = 31.0 bits (70), Expect = 0.015 Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 2/75 (2%) Query: 399 IKEPFVRATIITPSEFLGNLMQLLNNKRGIQEKMEYLNQSRVMLTYSLPSNEIVMDFYDK 458 + EP++ I P E+L + L + V+L+ +P+ I ++ Sbjct: 535 LLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCI-QEYRSD 592 Query: 459 LKSCTKGYASFDYEP 473 L T G + E Sbjct: 593 LTFFTNGRSVCLTEL 607
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 30.3 bits (68), Expect = 0.008 Identities = 9/40 (22%), Positives = 16/40 (40%) Query: 3 NGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITG 42 + A + L+ SNN+++ N G+ R I Sbjct: 2 SLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMA 41
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 40.2 bits (94), Expect = 1e-05 Identities = 57/308 (18%), Positives = 105/308 (34%), Gaps = 53/308 (17%) Query: 37 APYFAKEFTHTNDPTLALISAFLVFMLGFFMRPLGSLFFGKLGDKKGRKTSMVYSIILMA 96 P A +F T + +AF++ G+ +GKL D+ G K +++ II+ Sbjct: 37 LPDIANDFNKPPASTNWVNTAFMLTFSI------GTAVYGKLSDQLGIKRLLLFGIIINC 90 Query: 97 LGSFLLALLPTKEIVGEWAFLFLLLARLLQGFSVGGE------YGVVATYLSELGKNGKK 150 GS + VG F L++AR +QG G VVA Y+ + + Sbjct: 91 FGSVIGF-------VGHSFFSLLIMARFIQG--AGAAAFPALVMVVVARYIPKENRGKAF 141 Query: 151 GFYGSFQYVTLVGGQLLAIFSLFIVENIYTHEQISAFAWRYLFALGGVLALFSLFLRNIM 210 G GS + +G + I I+ W YL + + + FL ++ Sbjct: 142 GLIGS---IVAMGEGVGPAIGGMIAHYIH---------WSYLLLIPMITIITVPFLMKLL 189 Query: 211 EETMDSQTTFKTTIKEKTQRGSLKELLNHKKALMIVFGLTMGGSLCFYTFTVYLKIFLTN 270 ++ + + F +L + + T + IF+ + Sbjct: 190 KKEVRIKGHFDI----------KGIILMSVGIVFFMLFTTSYSISFLIVSVLSFLIFVKH 239 Query: 271 SSSFSPK-------ESSFIMLLALSYFILLQPLCG---MLADKIKRTQMLMVFAIAGLIV 320 + ++ M+ L I+ + G M+ +K L I +I+ Sbjct: 240 IRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVII 299 Query: 321 TPVVFYGI 328 P I Sbjct: 300 FPGTMSVI 307
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 30.9 bits (70), Expect = 0.002 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 4/64 (6%) Query: 88 LQSYSVMLFFSLLLLIDILGFLPFSIYHHFMASLIFSALFCSSLFLSSPLLGVIALVALS 147 L Y F L+L+ +LPFS S + + +L PLL V AL+A++ Sbjct: 45 LSDYYFEHFSKLMLIPAEQSYLPFSQ----ALSYVVDNVLLEFFYLCFPLLTVAALMAIA 100 Query: 148 SSLL 151 S ++ Sbjct: 101 SHVV 104
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 50.4 bits (120), Expect = 2e-09 Identities = 24/57 (42%), Positives = 28/57 (49%) Query: 83 APKPTLAGPQKPPTPPTPPTPPTPPKPIEKPEPKPKPKPKPEPKKPNHKHKALKKVE 139 P P +P P P P P IEKP+PKPKPKPKP K + +K VE Sbjct: 62 QPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVE 118 Score = 44.2 bits (104), Expect = 2e-07 Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 8/70 (11%) Query: 84 PKPTLAGPQKPPTPPTPPTPPTPPKPIEKPEPKPKPKPKPEPKKPNHKHKALKKVEKVEE 143 P + P +P P P P P P E P KPKPKP+PK K V+KV+E Sbjct: 57 PPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKP--------KPVKKVQE 108 Query: 144 KKVVEEKKEE 153 + + K E Sbjct: 109 QPKRDVKPVE 118 Score = 39.6 bits (92), Expect = 7e-06 Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 1/72 (1%) Query: 87 TLAGPQKPPTPPTPPTPPTPPKPIEKPEPKPKPKPKPEPKKPNHKHKALKKVEKVEEKKV 146 T+ P P PP P E PEP+P P+P E K K K + KKV Sbjct: 48 TMVTPADLEPPQAVQPPPEPVVEPE-PEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKV 106 Query: 147 VEEKKEEKKVVE 158 E+ K + K VE Sbjct: 107 QEQPKRDVKPVE 118 Score = 38.4 bits (89), Expect = 2e-05 Identities = 16/54 (29%), Positives = 21/54 (38%) Query: 74 QDPSKNTPGAPKPTLAGPQKPPTPPTPPTPPTPPKPIEKPEPKPKPKPKPEPKK 127 Q +P P P P PKP KP+PKP K + +PK+ Sbjct: 59 QAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKR 112 Score = 38.0 bits (88), Expect = 3e-05 Identities = 40/214 (18%), Positives = 75/214 (35%), Gaps = 34/214 (15%) Query: 98 PTPPTPPTPPKPIEKPEPKPKPKPKPEPKKPNHKHKALKKVEKVEEKKVVEEKKEEKKVV 157 P PP +P +P +P+P+P+P P+ P +E VV EK + K Sbjct: 52 PADLEPPQAVQPPPEPVVEPEPEPEPIPEPP-------------KEAPVVIEKPKPKPKP 98 Query: 158 EQKVEHKKVEEKKPVKKEFDPNQLSFLPKEVAPPRQENNKGLDNQTRRDIDELYGEEFGD 217 + K K E+ K K + P N T + Sbjct: 99 KPKPVKKVQEQPKRDVKPVESR----------PASPFENTAPARLTSSTATAATSKPVTS 148 Query: 218 LGTAEKDFIRNNLRDIGRITQKYLEYPQVAAYLGQDGTNAVEFYLHPNGDITDLKIIIGS 277 + + + RN + YP A L +G V+F + P+G + +++I+ Sbjct: 149 VASGPRALSRNQPQ-----------YPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAK 197 Query: 278 EYKMLDDNTLKTIQIAYKDYPRPKTKTLIRIRVR 311 M + ++ + +P + ++ I + Sbjct: 198 PANMFEREVKNAMRRWRYEPGKPGSGIVVNILFK 231 Score = 34.2 bits (78), Expect = 5e-04 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 2/54 (3%) Query: 74 QDPSKNTPGAPKPTLAGPQKPPTPPTPPTPPTPPKPIEKPEPKPKPKPKPEPKK 127 +P P+P P++ P P P PKP KP K + +PK + K Sbjct: 65 PEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKP--KPVKKVQEQPKRDVKP 116 Score = 30.0 bits (67), Expect = 0.011 Identities = 13/45 (28%), Positives = 18/45 (40%) Query: 84 PKPTLAGPQKPPTPPTPPTPPTPPKPIEKPEPKPKPKPKPEPKKP 128 P P P P PKP++K + +PK KP +P Sbjct: 77 PIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRP 121
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 99 bits (249), Expect = 2e-30 Identities = 25/77 (32%), Positives = 47/77 (61%) Query: 34 LICDYKNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKG 93 + D ++D+ + + ELG T++ + ++LR +GSV+ L AGE +D +NG +I +G Sbjct: 50 AMQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQG 109 Query: 94 EVMVFERNLAIRLNEIL 110 EV+V +R+ +I+ Sbjct: 110 EVVVVADKYGVRITDII 126
>OMS28PORIN#OMS28 porin signature. Length = 257 Score = 28.2 bits (62), Expect = 0.021 Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 11/112 (9%) Query: 25 NQTTELHHKNPYELLVATILSAQCTDARVNKITPKLFEKYPSVKDLAL-----ASLEEVK 79 N+ E+ K E A ++ + T +I + K P+ K+L L A +E+VK Sbjct: 132 NKVVEMSKKAVQETQKAVSVAGEATFLIEKQI---MLNKSPNNKELELTKEEFAKVEQVK 188 Query: 80 EIIKSVSYFNNKSKHLISMAQKVVRDFKGVIPSTQKELMSLDGVGQKTANVV 131 E + + +++ + AQKV+ G+ PS + ++++ V + +NVV Sbjct: 189 ETLMASERALDET---VQEAQKVLNMVNGLNPSNKDQVLAKKDVAKAISNVV 237
>FLAGELLIN#Flagellin signature. Length = 507 Score = 245 bits (627), Expect = 2e-77 Identities = 126/518 (24%), Positives = 209/518 (40%), Gaps = 22/518 (4%) Query: 2 AFRVNTNINAMNAHVQSALTQNALKTSLERLSSGLRINKAADDASGMTVADSLRSQANSL 61 A +NTN ++ +Q++L +++ERLSSGLRIN A DDA+G +A+ S L Sbjct: 1 AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60 Query: 62 GQAIANTNDGMGIIQVADKAMDEQLKILDTVKVKATQAAQDGQTTESRKAIQSDIVRLIQ 121 QA N NDG+ I Q + A++E L V+ + QA + K+IQ +I + ++ Sbjct: 61 TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120 Query: 122 GLDNIGNTTTYNGQALLSGQFTNKEFQVGAYSNQSIKASIGSTTSDKIGQVRI-ATGALI 180 +D + N T +NG +LS + QVGA ++I + +G G Sbjct: 121 EIDRVSNQTQFNGVKVLSQDN-QMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKE 179 Query: 181 TASGDISLTFKQVDGVNDVTLESVKISSSAGTGIGVLAEVINKNSNQTGVKAYASVITTS 240 GD+ +FK V G + + + K +G V ++ V A +TT Sbjct: 180 ATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTD 239 Query: 241 DVAVQSGSLSNLTLNGIHLGNIADIKKNDSDGRLVAAINAVTSETGVEAYTDQNGRLNLR 300 D N + K A A+ + + + + Sbjct: 240 DAE-----------NNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTID 288 Query: 301 SLDGRGIEIKTDSVSNGPSALTMVNGGQDLTKGSTNYGRLSLTRLDAKSINV------VS 354 + G K + NG V S + +N + Sbjct: 289 TKTGNDGNGKVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKT 348 Query: 355 ASDSQHLGFTAIGFGESQVAETTVNLRDVTGNFNANVKSASGANYNAVIASGNQSL---G 411 ++S L ++ TVN + T N + + +G + S Sbjct: 349 KNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINE 408 Query: 412 AGVTTLRGAMVVIDIAESAMKMLDKVRSDLGSVQNQMISTVNNISITQVNVKAAESQIRD 471 + + +SA+ +D VRS LG++QN+ S + N+ T N+ +A S+I D Sbjct: 409 DAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIED 468 Query: 472 VDFAEESANFNKNNILAQSGSYAMSQANTVQQNILRLL 509 D+A E +N +K IL Q+G+ ++QAN V QN+L LL Sbjct: 469 ADYATEVSNMSKAQILQQAGTSVLAQANQVPQNVLSLL 506
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.0 bits (67), Expect = 0.007 Identities = 13/95 (13%), Positives = 26/95 (27%), Gaps = 20/95 (21%) Query: 60 ILENDDEINLKKIAYIEFSKLAECVRPSGFYNQKAKRLINLSENILKDFQSFENFKQEVT 119 L + + +A+ E + VR + +KA E+ Sbjct: 458 ALRSAPALA-GCVAFDELREQPVAVRAFPW--RKAPGP-------------LEDADVLRL 501 Query: 120 REWLLDQKGIGKESADAILCYVCAKEVMVVDKYSY 154 +++ G G+ SA + D Sbjct: 502 ADYVETTYGTGEASAQTTEQAINV----AADMNRV 532
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.0 bits (65), Expect = 0.040 Identities = 16/113 (14%), Positives = 40/113 (35%), Gaps = 16/113 (14%) Query: 208 LARMIALQKKLEQIKTDIKRVTKLYDKGLTTIDDL-----QSLKAQGNLSEY--DILDMQ 260 LAR+ + K+ + + L K + + ++A L Y + ++ Sbjct: 220 LARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIE 279 Query: 261 FALEQNRLTLEYLTNLNVKNLKKTTIDVPNLQLRERQD-LVSLREQISALRYQ 312 + + + +T K +D +LR+ D + L +++ + Sbjct: 280 SEILSAKEEYQLVTQ----LFKNEILD----KLRQTTDNIGLLTLELAKNEER 324
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 51.4 bits (123), Expect = 7e-10 Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 13/113 (11%) Query: 5 ILMGLFLSFLSLEAGEKVYAIFNVKATQDSKLTLDS---------TGIVDSIKVTEGSVV 55 +MG + L +V + AT + KLT IV I V EG V Sbjct: 63 FIMGFLVIAFILSVLGQV----EIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESV 118 Query: 56 KKGDVLLLLYNQDKQAQSDSTEQQLIFAKKQYQRYSKIGGAVDKNTLESYEFN 108 +KGDVLL L +A + T+ L+ A+ + RY + +++ N L + Sbjct: 119 RKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLP 171 Score = 31.3 bits (71), Expect = 0.003 Identities = 16/115 (13%), Positives = 38/115 (33%), Gaps = 13/115 (11%) Query: 70 QAQSDSTEQQLIFAKKQYQR--YSKIGGAVDKNTLESYEFNYRRLESDYAYSIALLNKTI 127 +++ S +++ + ++ K+ D + + E ++ Sbjct: 279 ESEILSAKEEYQLVTQLFKNEILDKLRQTTDN--IGLLTLELAKNEER-------QQASV 329 Query: 128 LRAPFDGVIASKNIQVGEGVSANNTVLLRLVSHARKLVIE--FDSKYINAVKVGD 180 +RAP + + GV L+ +V L + +K I + VG Sbjct: 330 IRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQ 384
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 895 bits (2315), Expect = 0.0 Identities = 287/1040 (27%), Positives = 518/1040 (49%), Gaps = 42/1040 (4%) Query: 1 MYKTAINRPITTLMFALAIVFFGTMGFKKLSVALFPKIDLPTVVVTTTYPGASAEIIESK 60 M I RPI + A+ ++ G + +L VA +P I P V V+ YPGA A+ ++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VTDKIEEAVMGIDGIKKVTSTSSKNVSIVV-IEFELEKPNEEALNDVVNKISSVR-FDDS 118 VT IE+ + GID + ++STS S+ + + F+ + A V NK+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 119 NIKKPSINKFDTDSQAIISLFVSSSSVPAT--TLNDYAKNTIKPMLQKINGVGGVQLNGF 176 +++ I+ + S ++ S + T ++DY + +K L ++NGVG VQL G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG- 179 Query: 177 RERQIRIYADPTLMNKYNLTYADLFSTLKAENVEIDGGRIVNS------QRELSILINAN 230 + +RI+ D L+NKY LT D+ + LK +N +I G++ + Q SI+ Sbjct: 180 AQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 231 SYSVADVEKIQV-----GNHVRLGDIAKIEIGLEEDNTFASFKDKPGVILEIQKIAGANE 285 + + K+ + G+ VRL D+A++E+G E N A KP L I+ GAN Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 286 IEIVDRVYEALKHIQAISP-SYEIRPFLDTTSYIRTSIEDVKFDLILGAILAVLVVFAFL 344 ++ + L +Q P ++ DTT +++ SI +V L +L LV++ FL Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 345 RNGTITLVSAISIPISIMGTFALIQWMGFSLNMLTMVALTLAIGIIIDDAIVVIENIHK- 403 +N TL+ I++P+ ++GTFA++ G+S+N LTM + LAIG+++DDAIVV+EN+ + Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 404 KLEMGMSKRKASYEGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQSFGITVALAIA 463 +E + ++A+ + + +I ALV I+ +L +VF+P+ G G ++ F IT+ A+A Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 464 LSYVVVVTIIPMVSSVVVNPRHS-------RFYVWSEPFFKALESRYTKLLQWVLNHKLI 516 LS +V + + P + + ++ P + F+ W F + YT + +L Sbjct: 480 LSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539 Query: 517 ISIAVVLVFVGSLFVASKLGMDFMLKEDRGRFLVWLKAKPGVSIDY----MTQKSKIFQK 572 + L+ G + + +L F+ +ED+G FL ++ G + + + Q + + K Sbjct: 540 YLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLK 599 Query: 573 AIEKHAEVEFTTLQVGY-GTTQNPFKAKIFVQLKPLKERKKEHQLGQFELMSALRKELRS 631 + + E FT + G QN FV LKP +ER + ++ + EL Sbjct: 600 NEKANVESVFTVNGFSFSGQAQNA--GMAFVSLKPWEERNGDENS-AEAVIHRAKMELGK 656 Query: 632 LPEAKGLDTINLSEVALIGGGGDSSPFQTFVFSHSQEAVDKSVENLKKFLLESPELKGKV 691 + + + N+ + G ++ F + + D + + L + + + Sbjct: 657 IRDGFVI-PFNMPAIV---ELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASL 712 Query: 692 ESYHTSTSESQPQLQLKILRQNANKYGVSAQTIGSVVSSAFSGTSQASVFKEDGKEYDMI 751 S + E Q +L++ ++ A GVS I +S+A G + + F + G+ + Sbjct: 713 VSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGG-TYVNDFIDRGRVKKLY 771 Query: 752 IRVPDDKRVSVEDIKRLQVRNKYDKLMFLDALVEITETKSPSSISRYNRQRSVTVLAEPN 811 ++ R+ ED+ +L VR+ +++ A + RYN S+ + E Sbjct: 772 VQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEA- 830 Query: 812 RNAGVSLGEILTQVSKNTKEWLVEGANYRFTGEADNAKESNGEFLVALATAFVLIYMILA 871 G S G+ + + +N L G Y +TG + + S + +A +FV++++ LA Sbjct: 831 -APGTSSGDAMALM-ENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLA 888 Query: 872 ALYESILEPFIIMVTMPLSFSGAFFALGLVHQPLSMFSMIGLILLIGMVGKNATLLIDVA 931 ALYES P +M+ +PL G A L +Q ++ M+GL+ IG+ KNA L+++ A Sbjct: 889 ALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFA 948 Query: 932 NE-ERKKGLNIQEAILFAGKTRLRPILMTTIAMVCGMLPLALASGDGAAMKSPIGIAMSG 990 + K+G + EA L A + RLRPILMT++A + G+LPLA+++G G+ ++ +GI + G Sbjct: 949 KDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMG 1008 Query: 991 GLMISMVLSLLIVPVFYRLL 1010 G++ + +L++ VPVF+ ++ Sbjct: 1009 GMVSATLLAIFFVPVFFVVI 1028
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 273 bits (698), Expect = 5e-76 Identities = 106/407 (26%), Positives = 189/407 (46%), Gaps = 15/407 (3%) Query: 2786 SAGLNTIKS-AGNNSLMWLNALFTAKGGNPLFAPYYLQDNSTEHIVTLMKDITSALGMLS 2844 S ++T+ + +G L L + +A + S I + T+ L ++ Sbjct: 894 SNDIDTLYANSGAQGRDLLQTLLI-DSHDAGYARTMIDATSANEITKQLNTATTTLNNIA 952 Query: 2845 KSNLKNNSTDVLQLNTYTQQMGRLAKLSNFASFDSTDFSERLSSLKNQRFADAIPNAMDV 2904 K + L L+ RL LS + F++RL +LK+QRFA + +A +V Sbjct: 953 SLEHKTSGLQTLSLSNAMILNSRLVNLSRRHTNHIDSFAKRLQALKDQRFAS-LESAAEV 1011 Query: 2905 ILKYSQRDKLKNNLWATGVGGVSFVENGTGTLYGVNVGYDRFIKG---VIVGGYAAYGYS 2961 + +++ + + N+WA +GG S G +LYG + G D ++ G IVGG+ +YGYS Sbjct: 1012 LYQFAPKYEKPTNVWANAIGGTSLNSGGNASLYGTSAGVDAYLNGEVEAIVGGFGSYGYS 1071 Query: 2962 GFYER--ITSSKSDNVDVGLYARAFIKKSELTFSVNETWGANKTQISSNDTLLSMINQSY 3019 F + +S ++N + G+Y+R F + E F G++++ ++ LL +NQSY Sbjct: 1072 SFSNQANSLNSGANNTNFGVYSRIFANQHEFDFEAQGALGSDQSSLNFKSALLRDLNQSY 1131 Query: 3020 QYSTWTTNARVNYGYDFMFKNKSVIVKPQIGLRYYYIGMTGLEGVMNNALYNQFKANADP 3079 Y ++ R +YGYDF F ++++KP +G+ Y ++G T + + Sbjct: 1132 NYLAYSAATRASYGYDFAFFRNALVLKPSVGVSYNHLGSTNFKS----NSNQKVALKNGA 1187 Query: 3080 SKKSVLMIDFAFENRHYFNKNSYFYAIGGIGRDLLVRSMGDKLVRFIGDNILSYRKGELY 3139 S + + E R+Y+ SYFY G+ ++ + V + + R Sbjct: 1188 SSQHLFNASANVEARYYYGDTSYFYMNAGVLQEFANFGSSNA-VSLNTFKVNATRNP--L 1244 Query: 3140 NTFANITTGGEIRLFKSFYVNAGVGARFGLDYKMINITGNIGMRLAF 3186 NT A + GGE++L K ++N G L + + N+GMR +F Sbjct: 1245 NTHARVMMGGELKLAKEVFLNLGFVYLHNLISNIGHFASNLGMRYSF 1291 Score = 36.5 bits (84), Expect = 0.002 Identities = 41/222 (18%), Positives = 76/222 (34%), Gaps = 18/222 (8%) Query: 249 NGTTTISGVTFNNNGALTYKGGNGIGGSITFTNSNINHYKLNLNANSVTFNNSALGSMPN 308 T ++ N N T + G G S+T ++++ K +N ++ S L Sbjct: 388 GKNTVVNINRINTNADGTIRVG-GFKASLTTNAAHLHIGKGGINLSNQASGRSLLVENLT 446 Query: 309 GNANTVGNAYILNASNITFNNLTFNGGWFVFDRSNASVHFQGTTTINNPTSPFVNMTGNV 368 GN G + NN G + S+A+ F+ T N T+ F N Sbjct: 447 GNITVDGPLRV--------NNQV---GGYALAGSSANFEFKAGTDTKNGTATFNNDISLG 495 Query: 369 NINANAIFNIQNYTPSIGSAYTLFSMKNGSIAYNDASNLWNIIRLKNTQATKDNSKNATS 428 + I + F+ + ++ +N NI +L A+ + + + Sbjct: 496 RFVNLKVDAHTANFKGIDTGNGGFNT----LDFSGVTNKVNINKL--ITASTNVAVKNFN 549 Query: 429 NNNTHTYYVTYNLGGTLYNFRQIFSPNSIVLQSVYYGANNIY 470 N ++G + I S + I + G +IY Sbjct: 550 INELVVKTNGVSVGEYTHFSEDIGSQSRINTVRLETGTRSIY 591
>LCRVANTIGEN#Low calcium response V antigen signature. Length = 326 Score = 31.2 bits (70), Expect = 6e-04 Identities = 16/33 (48%), Positives = 20/33 (60%) Query: 16 KRKKLLTELAELEAEIKVSSERKSSFNISLSPS 48 R KL ELAEL AE+K+ S ++ N LS S Sbjct: 149 ARSKLREELAELTAELKIYSVIQAEINKHLSSS 181
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 55.2 bits (133), Expect = 1e-10 Identities = 24/110 (21%), Positives = 44/110 (40%), Gaps = 6/110 (5%) Query: 194 ILIAEDSLSALKTLEKIVQTLELRYLAFPNGKELLDYLYEKEHYQQVGVVITDLEMPVIS 253 IL+A+D + L + + N L ++ +V+TD+ MP + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAA----GDGDLVVTDVVMPDEN 61 Query: 254 GFEVLKTIKADSRTEHLPVIINSSMSSDSNRQLAQSLEADGFVVKSNILE 303 F++L IK LPV++ S+ ++ A A ++ K L Sbjct: 62 AFDLLPRIK--KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLT 109
>MALTOSEBP#Maltose binding protein signature. Length = 396 Score = 28.5 bits (63), Expect = 0.016 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 5/52 (9%) Query: 60 GELVPLEIVVETILSAIKSSDKGIILIDGYPRSVEQMQALDKELSAQNEVVL 111 G+L+ I VE LS I + D L+ P++ E++ ALDKEL A+ + L Sbjct: 127 GKLIAYPIAVEA-LSLIYNKD----LLPNPPKTWEEIPALDKELKAKGKSAL 173
>OMPTIN#Omptin serine protease signature. Length = 317 Score = 28.0 bits (62), Expect = 0.017 Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%) Query: 45 VSTTAGYYLTPNGAKTFIEAT 65 V+ AGYY+TPN AK ++E Sbjct: 253 VAVNAGYYVTPN-AKVYVEGA 272
>OMS28PORIN#OMS28 porin signature. Length = 257 Score = 29.8 bits (66), Expect = 0.023 Identities = 13/37 (35%), Positives = 25/37 (67%) Query: 309 EEDLLMSKKRLDKIYRLKQRVLGTLGGINPNFKKEIL 345 +E L+ S++ LD+ + Q+VL + G+NP+ K ++L Sbjct: 188 KETLMASERALDETVQEAQKVLNMVNGLNPSNKDQVL 224
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 139 bits (351), Expect = 2e-41 Identities = 72/80 (90%), Positives = 74/80 (92%) Query: 1 MELQQTHRKINRPLVSLALVGLLVSITPQKSHAAFFTTVIIPAIVGGIATGAAVGTVSGL 60 ME+QQTHRKINRPLVSLALVG LVSITPQ+SHAAFFTTVIIPAIVGGIATGAAVGTVSGL Sbjct: 1 MEIQQTHRKINRPLVSLALVGALVSITPQQSHAAFFTTVIIPAIVGGIATGAAVGTVSGL 60 Query: 61 LGWGLKQAEEANKPRINPIK 80 LGWGLKQAEEANK P K Sbjct: 61 LGWGLKQAEEANKTPDKPDK 80
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 1747 bits (4527), Expect = 0.0 Identities = 1041/1158 (89%), Positives = 1095/1158 (94%) Query: 1 MDMKDAVGTYKLSGLRNFTGGDLDVNMQKATLRLGQFNGNSFTSFKDSADRTTRVDFNAK 60 +DM++AVGTY LSGL NFTGGDLDVNMQKATLRLGQFNGNSFTS+KDSADRTTRVDFNAK Sbjct: 134 VDMQNAVGTYNLSGLINFTGGDLDVNMQKATLRLGQFNGNSFTSYKDSADRTTRVDFNAK 193 Query: 61 NISIDNFLEINNRVGSGAGRKASSTVLTLQASEGITSGKNAEISLYDGATLNLASNSVKL 120 NI IDNFLEINNRVGSGAGRKASSTVLTLQASEGITS +NAEISLYDGATLNLASNSVKL Sbjct: 194 NILIDNFLEINNRVGSGAGRKASSTVLTLQASEGITSRENAEISLYDGATLNLASNSVKL 253 Query: 121 MGNVWMGRLQYVGAYLAPSYSTINTSKVTGEVNFNHLTVGDRNAAQAGIIASKKTYIGTL 180 MGNVWMGRLQYVGAYLAPSYSTINTSKVTGEVNFNHLTVGD NAAQAGIIAS KT+IGTL Sbjct: 254 MGNVWMGRLQYVGAYLAPSYSTINTSKVTGEVNFNHLTVGDHNAAQAGIIASNKTHIGTL 313 Query: 181 DLWQSAGLNIIAPPEGGYKDKPNNTNSQSGAKNDKNESAKNDKQDSNTQVINPPNSGQKT 240 DLWQSAGLNIIAPPEGGYKDKPN+ S + N KN+ ++ + +SNTQVINPPNS QKT Sbjct: 314 DLWQSAGLNIIAPPEGGYKDKPNDKPSNTTQNNAKNDKQESSQNNSNTQVINPPNSAQKT 373 Query: 241 EIQPTQVIDGPFAGAKDTVVNISRINTNADGTIKVGGYTASLTTNAANLNIGKGGVNLSN 300 EIQPTQVIDGPFAG K+TVVNI+RINTNADGTI+VGG+ ASLTTNAA+L+IGKGG+NLSN Sbjct: 374 EIQPTQVIDGPFAGGKNTVVNINRINTNADGTIRVGGFKASLTTNAAHLHIGKGGINLSN 433 Query: 301 QASGRSLLVENLTGNITVDGALMVNNQVGGYALAGSSANFEFKAGVDTKNGTIAFNNNIS 360 QASGRSLLVENLTGNITVDG L VNNQVGGYALAGSSANFEFKAG DTKNGT FNN+IS Sbjct: 434 QASGRSLLVENLTGNITVDGPLRVNNQVGGYALAGSSANFEFKAGTDTKNGTATFNNDIS 493 Query: 361 LGRFVNLKASAHTVNFKDIDTGNGGFNTLDFSGVTNKVNINKLITASTNVAVKNFNINEL 420 LGRFVNLK AHT NFK IDTGNGGFNTLDFSGVTNKVNINKLITASTNVAVKNFNINEL Sbjct: 494 LGRFVNLKVDAHTANFKGIDTGNGGFNTLDFSGVTNKVNINKLITASTNVAVKNFNINEL 553 Query: 421 LVKTNGISVGEYTNFSEDIGNQSRINTVRLETGTRSIYSGGVKFKGGEKLVINDFYYAPW 480 +VKTNG+SVGEYT+FSEDIG+QSRINTVRLETGTRSIYSGGVKFKGGEKLVINDFYYAPW Sbjct: 554 VVKTNGVSVGEYTHFSEDIGSQSRINTVRLETGTRSIYSGGVKFKGGEKLVINDFYYAPW 613 Query: 481 NYFDARNIKNVEITNKLAFGPQGSPWGTSKLMFNNLTLGPNAVMDYSQFSNVTISGNFVN 540 NYFDARNIKNVEITNKLAFGPQGSPWGT+KLMFNNLTLG NAVMDYSQFSN+TI G+FVN Sbjct: 614 NYFDARNIKNVEITNKLAFGPQGSPWGTAKLMFNNLTLGQNAVMDYSQFSNLTIQGDFVN 673 Query: 541 NQGTINYLVRGGNIETLSVGNAAVMSFNNDIDSATGFYKPLIKINSAQDLIKNKEHVLLK 600 NQGTINYLVRGG + TL+VGNAA M F+N++DSATGFY+PL+KINSAQDLIKNKEHVLLK Sbjct: 674 NQGTINYLVRGGQVATLNVGNAAAMFFSNNVDSATGFYQPLMKINSAQDLIKNKEHVLLK 733 Query: 601 AKIIGYENASLGTNSISNANLIEQFNERLALYNNNNRMDTCVVRNTDDIKACGMAIGDQA 660 AKIIGY N S GT+SI+N NLIEQF ERLALYNNNNRMD CVVRNTDDIKACG AIG+Q+ Sbjct: 734 AKIIGYGNVSAGTDSIANVNLIEQFKERLALYNNNNRMDICVVRNTDDIKACGTAIGNQS 793 Query: 661 MVNNPDNYKYLIGKAWKNIGISKTANGSKISVRYLGNSTPTDNGGNTTNLPTNTTNNARF 720 MVNNP+NYKYL GKAWKNIGISKTANGSKISV YLGNSTPT+NGGNTTNLPTNTTN RF Sbjct: 794 MVNNPENYKYLEGKAWKNIGISKTANGSKISVHYLGNSTPTENGGNTTNLPTNTTNKVRF 853 Query: 721 ARYALIKNAPFAQTNATPNLVAINKHNFGTIESVFELANRSKDIDTLYAKSGAQGRDLLQ 780 A YALIKNAPFA+ +ATPNLVAIN+H+FGTIESVFELANRS DIDTLYA SGAQGRDLLQ Sbjct: 854 ASYALIKNAPFARYSATPNLVAINQHDFGTIESVFELANRSNDIDTLYANSGAQGRDLLQ 913 Query: 781 TLLIDSHDAGYARTMIDATSANEITKQLNTATDALNNIASLEHKTNGLQTLSLSNAMILN 840 TLLIDSHDAGYARTMIDATSANEITKQLNTAT LNNIASLEHKT+GLQTLSLSNAMILN Sbjct: 914 TLLIDSHDAGYARTMIDATSANEITKQLNTATTTLNNIASLEHKTSGLQTLSLSNAMILN 973 Query: 841 SRLVNLSRRHTNNIDSFAQRLQALKGQRFASLESAAEVLYQFAPKYEKPTNVWANAIGGA 900 SRLVNLSRRHTN+IDSFA+RLQALK QRFASLESAAEVLYQFAPKYEKPTNVWANAIGG Sbjct: 974 SRLVNLSRRHTNHIDSFAKRLQALKDQRFASLESAAEVLYQFAPKYEKPTNVWANAIGGT 1033 Query: 901 SLNSGGNTSLYGTSAGVDAYLNGEVEAIVGGFGSYGYSSFNNQANSLNSGANNANFGVYS 960 SLNSGGN SLYGTSAGVDAYLNGEVEAIVGGFGSYGYSSF+NQANSLNSGANN NFGVYS Sbjct: 1034 SLNSGGNASLYGTSAGVDAYLNGEVEAIVGGFGSYGYSSFSNQANSLNSGANNTNFGVYS 1093 Query: 961 RIFANQHEFDFEAQGAVGSDQSSLNFKSALLRDLNQSYNYLAYGASTRASYGYDFAFFRN 1020 RIFANQHEFDFEAQGA+GSDQSSLNFKSALLRDLNQSYNYLAY A+TRASYGYDFAFFRN Sbjct: 1094 RIFANQHEFDFEAQGALGSDQSSLNFKSALLRDLNQSYNYLAYSAATRASYGYDFAFFRN 1153 Query: 1021 ALVLKPSVGVSYNHLGSTNFESNSTHKTALKNGASSQHLFNASANVEARYYYGDTSYFYM 1080 ALVLKPSVGVSYNHLGSTNF+SNS K ALKNGASSQHLFNASANVEARYYYGDTSYFYM Sbjct: 1154 ALVLKPSVGVSYNHLGSTNFKSNSNQKVALKNGASSQHLFNASANVEARYYYGDTSYFYM 1213 Query: 1081 NAGVLQEFANFGSSNAVSLNTFKVNTARNPLNTHARVMMGGELKLAKEVFLNLGFIYLHN 1140 NAGVLQEFANFGSSNAVSLNTFKVN RNPLNTHARVMMGGELKLAKEVFLNLGF+YLHN Sbjct: 1214 NAGVLQEFANFGSSNAVSLNTFKVNATRNPLNTHARVMMGGELKLAKEVFLNLGFVYLHN 1273 Query: 1141 LISNAGYFASNLGMRYSF 1158 LISN G+FASNLGMRYSF Sbjct: 1274 LISNIGHFASNLGMRYSF 1291
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 88.6 bits (219), Expect = 7e-23 Identities = 58/245 (23%), Positives = 107/245 (43%), Gaps = 10/245 (4%) Query: 1 MGEKKESQKVAIITGASSGIGLECALMLLDQGYKVYALSRHATLCVALNHALC------E 54 M K K+A ITGA+ GIG A L QG + A+ + + +L E Sbjct: 1 MNAKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAE 60 Query: 55 SIDIDVSDSNALKEAFLNISAKEDHCDVLINSAGYGVFGSVEDTPIDEVKKQFGVNFFAL 114 + DV DS A+ E I + D+L+N AG G + +E + F VN + Sbjct: 61 AFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGV 120 Query: 115 CEVVQFCLPLLKNKPHSKIFNLSSIAGRVSMLFLGHYSASKHALEAYSDALRLELKPFNI 174 + + ++ I + S V + Y++SK A ++ L LEL +NI Sbjct: 121 FNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNI 180 Query: 175 QVCLIEPGPVKSNWEKTAFENDERKDSLYALEVNAAKSFYSGV-YQKALSPKAVAQKIVF 233 + ++ PG +++ + + + ++ + + + ++F +G+ +K P +A ++F Sbjct: 181 RCNIVSPGSTETDMQWSLWADENGAEQVIK---GSLETFKTGIPLKKLAKPSDIADAVLF 237 Query: 234 LTMSQ 238 L Q Sbjct: 238 LVSGQ 242
>SECA#SecA protein signature. Length = 901 Score = 29.5 bits (66), Expect = 0.003 Identities = 13/69 (18%), Positives = 33/69 (47%), Gaps = 12/69 (17%) Query: 4 SPTKKDYTQYSEKQLFNLINQLEQKIKKMQNDRASFKEKMAKELEKRDQNFKDKIDALNE 63 S + + +++ N+IN +E +++K+ ++ EL+ + F+ +++ Sbjct: 12 SRNDRTLRRM--RKVVNIINAMEPEMEKLSDE----------ELKGKTAEFRARLEKGEV 59 Query: 64 LLQKISQAF 72 L I +AF Sbjct: 60 LENLIPEAF 68
>PF08280#M protein trans-acting positive regulator Length = 530 Score = 30.6 bits (69), Expect = 0.027 Identities = 19/112 (16%), Positives = 44/112 (39%), Gaps = 5/112 (4%) Query: 443 CAYVEQTITNLNNSISHFGTEEQQIQQAENIADTLVHFKSRYSELGNTYNSITTALSSIP 502 C YVEQ + N+ + I A + D+ + S S ++Y + + IP Sbjct: 412 CHYVEQILRNIQPPLVVVFVASNFI-NAHLLTDSFPRYFSDKSIDFHSYYLLQDNVYQIP 470 Query: 503 NAQSLQNVVNKKNNPYSPQGIETNYYLNQNSYN----QIQTINQELGRNPFR 550 + + + + + P+ + + + S++ IQ + ++ F+ Sbjct: 471 DLKPDLVITHSQLIPFVHHELTKGIAVAEISFDESILSIQELMYQVKEEKFQ 522
>ECOLIPORIN#E.coli/Salmonella-type porin signature. Length = 383 Score = 29.9 bits (67), Expect = 0.026 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 3/68 (4%) Query: 196 YVAIGQKESTVAQVVRKLEEYGAMEYSVVINASASDSAAMQYLAPYSGVAMGEYFR-DHA 254 Y+ +G K T Q+ +L YG EY+V N + + A ++G+ G+Y D+ Sbjct: 56 YMRVGFKGET--QINDQLTGYGQWEYNVQANTTEGEGANSWTRLAFAGLKFGDYGSFDYG 113 Query: 255 RHALIIYD 262 R+ ++YD Sbjct: 114 RNYGVLYD 121
>PF06438#Heme acquisition protein HasAp Length = 205 Score = 29.9 bits (67), Expect = 0.004 Identities = 10/43 (23%), Positives = 22/43 (51%) Query: 45 AFSYASSFKEYTIHSYEHAKNLLFLETIHTPEEAKELTNLGLF 87 + SY++++ +T+ Y + F + H P + + +N G F Sbjct: 4 SISYSTTYSGWTVADYLADWSAYFGDVNHRPGQVVDGSNTGGF 46
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 96.8 bits (241), Expect = 5e-24 Identities = 82/407 (20%), Positives = 155/407 (38%), Gaps = 40/407 (9%) Query: 3 KKIFPLALVSSLRFLGLFIVLPVISLYADSFHSSSPLL--VGLAVGGAYLTQIVFQTPMG 60 + + + +L +G+ +++PV+ S+ + G+ + L Q +G Sbjct: 5 RPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLG 64 Query: 61 ILSDKIGRKVVVMVCLLLFLIGSLVCFIANDIVWLIIGRFIQGM-GALGGVVSAMVADEV 119 LSD+ GR+ V++V L + + A + L IGR + G+ GA G V A +AD Sbjct: 65 ALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADIT 124 Query: 120 KEEERTKAMAIMGAFIFISFTISMAIGPGVVAFFGG--AKWLFLLTAILTLLSLLM-LLK 176 +ER + M A F M GP + GG F A L L+ L Sbjct: 125 DGDERARHFGFMSA----CFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFL 180 Query: 177 VKDAPKISYQIKNIKAYQPNSKALYLLYLSSFFEKAFMTLIFVL-----IPLAL-----V 226 + ++ K + +A P + + ++ A M + F++ +P AL Sbjct: 181 LPESHKGERRPLRREALNPLASFRWARGMTVV--AALMAVFFIMQLVGQVPAALWVIFGE 238 Query: 227 NEFHKDESFLILVYVPGALLGVLSMGVASVMAEKYNKPKGVMLSGALLFIVSYLCLFLAD 286 + FH D + + + +L L+ + + + ++ G + Y+ L A Sbjct: 239 DRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFAT 298 Query: 287 SSFLGKYLWLFILGVAFFFIGFATLEPIMQSLASKFARVHEKGKVLGQFTTFGYLGSFVG 346 W+ + P +Q++ S+ +G++ G L S VG Sbjct: 299 RG------WMAFPIM-VLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVG 351 Query: 347 GVSGGLSY-HHLGVSNTSLIVVALGLIW--GLSLFLLNNPSKQKNVY 390 + Y + N G W G +L+LL P+ ++ ++ Sbjct: 352 PLLFTAIYAASITTWN--------GWAWIAGAALYLLCLPALRRGLW 390
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 49.1 bits (117), Expect = 2e-08 Identities = 53/290 (18%), Positives = 103/290 (35%), Gaps = 18/290 (6%) Query: 22 ALLSDIAKSFEMESATVGLMITLYAWLVSLGSLPLMLFSAKIERKRLLLFLFALFILSHI 81 LL D+ S +A G+++ LYA + + L S + R+ +LL A + + Sbjct: 30 GLLRDLVHS-NDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYA 88 Query: 82 LSALAWNFWVLLISRIGIAFAHSIFWSITASLVIRVAPRNKKQQALGLLALGSSLAMILG 141 + A A WVL I RI +A ++ + + + +++ + G ++ M+ G Sbjct: 89 IMATAPFLWVLYIGRI-VAGITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAG 147 Query: 142 LPLGRIIGQILDWRSTFGVIGGVATLIALLMYKLLP----------HLPSKNAGTLSSLP 191 LG ++G + F + L L LLP + N Sbjct: 148 PVLGGLMGGF-SPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWA 206 Query: 192 VLVKRPLLVGIYLLVIMVISGHFTTYSYIEPFIIQISQFSPDITTLMLFVFGLAG-VVGS 250 + + ++ ++ I F + + L FG+ + + Sbjct: 207 RGMTVVAALMAVFFIMQLVGQVPAALWVI--FGEDRFHWDATTIGISLAAFGILHSLAQA 264 Query: 251 FLFGRLYAK-NSRKFIAFAMILVICPQLLLFVFKNSEWVVFLQIFLWGIG 299 + G + A+ R+ + MI +L F W+ F + L G Sbjct: 265 MITGPVAARLGERRALMLGMIADGT-GYILLAFATRGWMAFPIMVLLASG 313
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 28.9 bits (64), Expect = 0.044 Identities = 19/144 (13%), Positives = 49/144 (34%), Gaps = 6/144 (4%) Query: 97 DQSKKEVAQAQKEAENARDRANKSGIELGQEKQ------KTSNIETSNQIKVEQEKQKTE 150 + SK+E +K ++A + ++ + K +T+ + S E + +T+ Sbjct: 1042 ENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETK 1101 Query: 151 QEKQKTEQEKQKTIKTQKDFIKDLEQNCKENHGQFFIEKGGIKAGIGGITIEAEAECKTP 210 + ++EK K + + + Q + + E ++ Sbjct: 1102 ETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQ 1161 Query: 211 KPTKTNQTPIQPKHLPNSKQPHSQ 234 T + + N +QP ++ Sbjct: 1162 TNTTADTEQPAKETSSNVEQPVTE 1185
>CLENTEROTOXN#Clostridium enterotoxin signature. Length = 319 Score = 29.2 bits (65), Expect = 0.024 Identities = 20/110 (18%), Positives = 40/110 (36%), Gaps = 15/110 (13%) Query: 45 KIKAFHKDYEILETTH-EVFEKEKIDIAFFSAGGSVSEEFATSASKTALVIDNTSFFRLD 103 K+ A ++ Y+ + +H + + I + G +S+ A S ID S Sbjct: 131 KVYATYRKYQAIRISHGNISDDGSI---YKLTGIWLSKTSADSLGN----IDQGSLIETG 183 Query: 104 KKVPLVVPEINAKEIFNAPLNIIANPNCSTIQMTQIL--NPLHLHFKIKS 151 ++ L VP + ++ + +T L NP + +S Sbjct: 184 ERCVLTVPSTDIEKEILDL-----AAATERLNLTDALNSNPAGNLYDWRS 228
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 639 bits (1650), Expect = 0.0 Identities = 178/671 (26%), Positives = 304/671 (45%), Gaps = 66/671 (9%) Query: 9 RIRNIGIAAHIDAGKTTTSERILFYTGVSHKIGEVHDGAATMDWMEQEKERGITITSAAT 68 +I NIG+ AH+DAGKTT +E +L+ +G ++G V G D E++RGITI + T Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 69 TCFWKDHQINLIDTPGHVDFTIEVERSMRVLDGAVSVFCSVGGVQPQSETVWRQANKYGV 128 + W++ ++N+IDTPGH+DF EV RS+ VLDGA+ + + GVQ Q+ ++ K G+ Sbjct: 62 SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGI 121 Query: 129 PRIVFVNKMDRIGANFYNVENQIKLRLKANPVPINIPIGAEDTFIGVIDLVQMKAIVWNN 188 P I F+NK+D+ G + V IK +L A V Sbjct: 122 PTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVI--------------------------- 154 Query: 189 ETMGAKYDVEEIPSDLLEKAKQYREKLVEAVAEQDEALMEKYLGGEELSVEEIKKGIKTG 248 K VE P+ + + + + V E ++ L+EKY+ G+ L E+++ Sbjct: 155 -----KQKVELYPNMCVTNFTESEQ--WDTVIEGNDDLLEKYMSGKSLEALELEQEESIR 207 Query: 249 CLNMSLVPMLCGSSFKNKGVQTLLDAVIDYLPAPTEVVDIKGIDPKTEEEVFVKSSDDGE 308 N SL P+ GS+ N G+ L++ + + + T E Sbjct: 208 FHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSSTH-------------------RGQSE 248 Query: 309 FAGLAFKIMTDPFVGQLTFVRVYRGKLESGSYVYNSTKDKKERVGRLLKMHSNKREDIKE 368 G FKI +L ++R+Y G L V S K+K ++ + + + I + Sbjct: 249 LCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKI-KITEMYTSINGELCKIDK 307 Query: 369 VYAGEICAFVG----LKDTLTGDTLCDEKNAVVLERMEFPEPVIHIAVEPKTKADQEKMG 424 Y+GEI L L GDT + ER+E P P++ VEP +E + Sbjct: 308 AYSGEIVILQNEFLKLNSVL-GDTKLLPQR----ERIENPLPLLQTTVEPSKPQQREMLL 362 Query: 425 VALGKLAEEDPSFRVMTQEETGQTLIGGMGELHLEIIVDRLKREFKVEAEIGQPQVAFRE 484 AL ++++ DP R T + ++ +G++ +E+ L+ ++ VE EI +P V + E Sbjct: 363 DALLEISDSDPLLRYYVDSATHEIILSFLGKVQMEVTCALLQEKYHVEIEIKEPTVIYME 422 Query: 485 TIRSSVSKEHKYAKQSGGRGQYGHVFIKLEPKEPGSGYEFVNEISGGVIPKEYIPAVDKG 544 R E+ + + + + + P GSG ++ + +S G + + + AV +G Sbjct: 423 --RPLKKAEYTIHIEVPPNPFWASIGLSVSPLPLGSGMQYESSVSLGYLNQSFQNAVMEG 480 Query: 545 IQEAMQNGVLAGYPVVDFKVTLYDGSYHDVDSSEMAFKIAGSMAFKEASRAANPVLLEPM 604 I+ + G L G+ V D K+ G Y+ S+ F++ + ++ + A LLEP Sbjct: 481 IRYGCEQG-LYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQVLKKAGTELLEPY 539 Query: 605 MKVEVEVPEEYMGDVIGDLNRRRGQINSMDDRLGLKIVNAFVPLVEMFGYSTDLRSATQG 664 + ++ P+EY+ D + I + I++ +P + Y +DL T G Sbjct: 540 LSFKIYAPQEYLSRAYTDAPKYCANIVDTQLKNNEVILSGEIPARCIQEYRSDLTFFTNG 599 Query: 665 RGTYSMEFDHY 675 R E Y Sbjct: 600 RSVCLTELKGY 610
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 50.9 bits (122), Expect = 2e-09 Identities = 52/346 (15%), Positives = 107/346 (30%), Gaps = 54/346 (15%) Query: 5 ILITGAYGMVGQNTALYFKKNKPDV-----------ALLTPKKSELY-----------LL 42 L+TGA G +G + + + V L + EL L Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDLA 62 Query: 43 DKDNVQAYLKEYKPTGIIHCAGRVGGIVANMSDLSAYMVENLLMGLYLFSSALDLGVKKA 102 D++ + + R + ++ + AY NL L + ++ Sbjct: 63 DREGMTDLFASGHFERVFISPHR-LAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 103 INLASSCAYPKFAPNPLKESDLLNGSLEPTNEGYALAKLSVMKYCEYVSAEKGVFYKTLV 162 + +SS Y P D ++ + YA K + S G+ L Sbjct: 122 LYASSSSVYGLNRKMPFSTDDSVDHPVSL----YAATKKANELMAHTYSHLYGLPATGLR 177 Query: 163 PCNLYGEFDKFEEKIAHMIPGLIARMHTAKLKNEKEFVMWGDGTARREYLNAKDLARFIS 222 +YG + + P + T + K ++ G +R++ D+A I Sbjct: 178 FFTVYGPWGR---------PDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAII 228 Query: 223 LAYENIASIPS-----------------VMNVGSGVDYSIEEYYKMIAQVLDYKGAFVKD 265 + I + V N+G+ + +Y + + L + Sbjct: 229 RLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNML 288 Query: 266 LSKPVGMQQKLMDISK-QKALKWELEIPLEQGIKEAYEYYLKLLEV 310 +P + + D + + + E ++ G+K +Y +V Sbjct: 289 PLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDFYKV 334
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 87.9 bits (218), Expect = 1e-21 Identities = 46/180 (25%), Positives = 72/180 (40%), Gaps = 19/180 (10%) Query: 7 LITGVTGQDGSYLAEYLLNLGYEVHGLKRRSSSINTSRIDHLYEDLHSEHKRRFFLHYGD 66 L+TG G G ++++ LL G++V G+ + + S E L F H D Sbjct: 4 LVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQP---GFQFHKID 60 Query: 67 MTDSSNLIHLIATTKPTEIYNLAAQSHVKVSFETPEYTANADGIGTLRILEAMRILGLEK 126 + D + L A+ ++ + V+ S E P A+++ G L ILE R ++ Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQ- 119 Query: 127 KTRFYQASTSELYGEVLETPQNENTPF-------NPRSPYAVAKMYAFYITKNYREAYNL 179 AS+S +YG N PF +P S YA K + Y Y L Sbjct: 120 --HLLYASSSSVYGL------NRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGL 171
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 31.7 bits (71), Expect = 0.004 Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 8/72 (11%) Query: 191 KEETKEEETITIGDNTNAMKIVKKDIQKGYKALKSSQ--RKWYCLGICSKKSKLSLMPEE 248 KE+ +EE+ I D A+ + Q + ALK + R + K+SK +MP E Sbjct: 365 KEKIREEKQKIILDQAKAL-----ETQYVHNALKRNPVPRNYNYYQAPEKRSK-HIMPSE 418 Query: 249 IFNDKQFTYFKF 260 IF+D FTYF F Sbjct: 419 IFDDGTFTYFGF 430
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 133 bits (336), Expect = 1e-40 Identities = 38/202 (18%), Positives = 73/202 (36%), Gaps = 4/202 (1%) Query: 40 QSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKTEHHF--VDFLNQDKHYAII 97 + K+A+ + G+ +A + + ++ PL+ E + VD + A Sbjct: 22 RDKLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIAAK 81 Query: 98 QRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQN 157 D +I+ +EA+ + + YV RE + ++ V + S+ R+ KT N Sbjct: 82 LHGDATITYDEAVRKYFLATYVRYREGWIAAAREEYFDAVMVMSARPEQDRWSRFYKTDN 141 Query: 158 SIYVQSHLEREVHI-VNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTP 216 Q+ L + V I +A V + + + + + Y D Sbjct: 142 PQSPQNILANRTDVFVEIKRVSFLGGNVAQVYFTKESVTGSNST-KTDAVATIKYKVDGT 200 Query: 217 DFDYASMPKNPTGFKVTRYSIT 238 KNP G++V Y Sbjct: 201 PSKEVDRFKNPLGYQVESYRAD 222
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 419 bits (1078), Expect = e-143 Identities = 132/399 (33%), Positives = 222/399 (55%), Gaps = 32/399 (8%) Query: 175 DLGALTIIKTLTFYDDLHYDLQIAFKSPN--------NIIPSYVITNGYRPVADLDS--- 223 D T KT Y + + + N + + P D S Sbjct: 155 DAAGNTFTKTFVLKRG-DYAVNVNYNVQNAGEKPLEISSFGQLKQSITLPPHLDTGSSNF 213 Query: 224 --YTFSGVLLENNDKKIEKIE---DKDAKEIKRFSNTLFLSSVDRYFTTLLFTKDPQGFE 278 +TF G D+K EK + D + + S +++ + +YF T + G Sbjct: 214 ALHTFRGAAYSTPDEKYEKYKFDTIADNENLNISSKGGWVAMLQQYFATAWIPHN-DGTN 272 Query: 279 ALIDSEIGTKNPLGFISLKNEA-----------NLHGYIGPKDYRSLKAISPMLTDVIEY 327 + +G N + I K++ N ++GP+ + A++P L ++Y Sbjct: 273 NFYTANLG--NGIAAIGYKSQPVLVQPGQTGAMNSTLWVGPEIQDKMAAVAPHLDLTVDY 330 Query: 328 GLITFFAKGVFVLLDYLYQFVGNWGWAIILLTIIVRLILYPLSYKGMVSMQKLKELTPKM 387 G + F ++ +F LL +++ FVGNWG++II++T IVR I+YPL+ SM K++ L PK+ Sbjct: 331 GWLWFISQPLFKLLKWIHSFVGNWGFSIIIITFIVRGIMYPLTKAQYTSMAKMRMLQPKI 390 Query: 388 KELQEKYKGEPQKLQAHMMQLYKKHGANPLGGCLPLILQIPVFFAIYRVLYNAVELKSSE 447 + ++E+ + Q++ MM LYK NPLGGC PL++Q+P+F A+Y +L +VEL+ + Sbjct: 391 QAMRERLGDDKQRISQEMMALYKAEKVNPLGGCFPLLIQMPIFLALYYMLMGSVELRQAP 450 Query: 448 WILWIHDLSIMDPYFILPLLMGASMYWHQSVTPNTMTDPMQAKIFKLLPLLFTIFLITFP 507 + LWIHDLS DPY+ILP+LMG +M++ Q ++P T+TDPMQ KI +P++FT+F + FP Sbjct: 451 FALWIHDLSAQDPYYILPILMGVTMFFIQKMSPTTVTDPMQQKIMTFMPVIFTVFFLWFP 510 Query: 508 AGLVLYWTTNNILSVLQQLIINKVLENKKRAHAQSKKEN 546 +GLVLY+ +N+++++QQ +I + LE K+ H++ KK++ Sbjct: 511 SGLVLYYIVSNLVTIIQQQLIYRGLE-KRGLHSREKKKS 548
>TACYTOLYSIN#Bacterial thiol-activated pore-forming cytolysin signature. Length = 574 Score = 28.0 bits (62), Expect = 0.038 Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 5/89 (5%) Query: 39 SKGFLNIGKKEAIILAGVKESVKAVKEESVKETHTKEIHQSV-GEKKQNSETKTPQEETI 97 S + + KE + + KE K+ + +E HT+EI+ + E ETI Sbjct: 75 SNDMIKLAPKEMPLESAEKEEKKSEDNKKSEEDHTEEINDKIYSLNYNELEVLAKNGETI 134 Query: 98 TPKPSKKNLKEESHNGDKLHEIKQELKDL 126 K+ +K+ DK I+++ K++ Sbjct: 135 ENFVPKEGVKK----ADKFIVIERKKKNI 159
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 34.4 bits (79), Expect = 0.001 Identities = 32/134 (23%), Positives = 54/134 (40%), Gaps = 25/134 (18%) Query: 216 LSIVGKPNAGKSSLLNAMLLEERA---LVSDIKGTTR-DTIEE-------------VIEL 258 + ++ +AGK++L ++L A L S KGTTR D + Sbjct: 6 IGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW 65 Query: 259 QGHKVRLIDTAGIRESADKIERLGIEKSLKSLENCDIVLGVFDLSKPLEKEDFTIIDALN 318 + KV +IDT G + ++ R SL L D + + ++ + + AL Sbjct: 66 ENTKVNIIDTPGHMDFLAEVYR-----SLSVL---DGAILLISAKDGVQAQTRILFHALR 117 Query: 319 RAQKPCIVVLNKND 332 + P I +NK D Sbjct: 118 KMGIPTIFFINKID 131
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 33.8 bits (77), Expect = 0.002 Identities = 13/28 (46%), Positives = 15/28 (53%) Query: 48 KEQTIATTQEKPKPKPKPKPKPKPITPQ 75 + EKPKPKPKPKPKP + Sbjct: 81 PPKEAPVVIEKPKPKPKPKPKPVKKVQE 108
>LIPOLPP20#LPP20 lipoprotein precursor signature. Length = 175 Score = 294 bits (753), Expect = e-105 Identities = 173/175 (98%), Positives = 174/175 (99%) Query: 1 MKNQVKKILGMSVIATMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK 60 MKNQVKKILGMSV+A MVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK Sbjct: 1 MKNQVKKILGMSVVAAMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK 60 Query: 61 YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRS 120 YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRS Sbjct: 61 YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRS 120 Query: 121 ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK 175 ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK Sbjct: 121 ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK 175
>ADHESNFAMILY#Adhesin family signature. Length = 309 Score = 30.6 bits (69), Expect = 0.016 Identities = 12/70 (17%), Positives = 22/70 (31%), Gaps = 1/70 (1%) Query: 334 KHFDTYIENDKPYDENLATLFKRYGIIITRESRKRKNFVVFHLIGNYFEYKNRFPKEFSH 393 + + Y +N K Y + L L K + ++K V YF Sbjct: 164 NNKEFYEKNLKEYTDKLDKLDKESKDKFNKIPAEKKLIVTSEGAFKYFSKAYGV-PSAYI 222 Query: 394 FNLNNTSYFS 403 + +N + Sbjct: 223 WEINTEEEGT 232
>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE signature. Length = 103 Score = 77.0 bits (189), Expect = 6e-22 Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 1/77 (1%) Query: 34 EQKGGEFSKLLKQSINELNNTQEQSDKALADMATGQIK-DLHQAAIAIGKAETSMKLMLE 92 Q F+ L +++ +++TQ + G+ L+ + KA SM++ ++ Sbjct: 27 PQPTISFAGQLHAALDRISDTQTAARTQAEKFTLGEPGVALNDVMTDMQKASVSMQMGIQ 86 Query: 93 VRNKAISAYKELLRTQI 109 VRNK ++AY+E++ Q+ Sbjct: 87 VRNKLVAAYQEVMSMQV 103
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 28.4 bits (63), Expect = 0.012 Identities = 10/38 (26%), Positives = 15/38 (39%) Query: 121 NVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAIGM 158 VN E +L + Y AN Q+A + I + Sbjct: 508 GVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 34.2 bits (78), Expect = 6e-04 Identities = 31/183 (16%), Positives = 74/183 (40%), Gaps = 10/183 (5%) Query: 106 NVELLKKLSPDLVVTFVGNPKAVEHAKKF--GISFLSFQEKTIAEVMEDID---AQAKAL 160 N+ELL ++ P +V G + E + G F K + A L Sbjct: 88 NLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNL 147 Query: 161 EIDASKKLAKMQETLDFIKERL-KDVKKKKGVELFHKAN--KISGHQALDSDILEKGGID 217 + A LA+ ++ + +K R K + + + G +L +IL++ GI Sbjct: 148 QSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGIP 207 Query: 218 N-FGLKYVKFGRADVSVEKIVK-ENPEIIFIWWISPLTPEDVLNNPKFSTIKAIKNKQVY 275 N + + +G VS++++ ++ +++ + + ++ P + + ++ + Sbjct: 208 NAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGRFQ 267 Query: 276 KLP 278 ++P Sbjct: 268 RVP 270
>TYPE3IMPPROT#Type III secretion system inner membrane P protein family signature. Length = 224 Score = 29.4 bits (66), Expect = 0.031 Identities = 9/23 (39%), Positives = 12/23 (52%) Query: 4 LRYKLLLFVFIGFWGLLVLNLFI 26 KL+LFV + W LL L + Sbjct: 195 TPIKLVLFVALDGWTLLSKGLIL 217