>PF00577#Outer membrane usher protein FimD Length = 878 Score = 29.4 bits (66), Expect = 0.006 Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 3/51 (5%) Query: 6 PYNGNVTSINPEDIESTVILKDATATAIYGARGANGVVLINTKTGRGRSVI 56 Y N +++ + V L +A A + RGA +V K G ++ Sbjct: 752 EYRENRVALDTNTLADNVDLDNAVANVVPT-RGA--IVRAEFKARVGIKLL 799
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 25.9 bits (57), Expect = 0.019 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 2/37 (5%) Query: 56 KDRQIPDEVIVGGYEALNPKKRPLFYRDKALEYIKQL 92 + ++ D+V V NP K+P+F + LE I + Sbjct: 22 RGCRLFDQVYVA--VLRNPNKQPMFSVQERLEQIAKA 56
>STREPTOPAIN#Streptopain (C10) cysteine protease family signature. Length = 398 Score = 29.3 bits (65), Expect = 0.017 Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 7/72 (9%) Query: 186 IEGYIKNIREDGKIDVSLQPEGYTNIDEFKQKILDKLDENYGLLYLSDQSSPEEIKTELQ 245 +E Y++ I+E+ K+D + Y E KQ ++ L ++ G+ Y +Q +P + T + Sbjct: 121 MESYVEQIKENKKLDTT-----YAGTAEIKQPVVKSLLDSKGIHY--NQGNPYNLLTPVI 173 Query: 246 MSKKNFKKAIGG 257 K +++ G Sbjct: 174 EKVKPGEQSFVG 185
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 37.7 bits (87), Expect = 1e-04 Identities = 23/166 (13%), Positives = 45/166 (27%), Gaps = 4/166 (2%) Query: 38 EDAKKNAENLIEKAKVKAESIKQEKNIQAKERFLELKTEHDAHIQQREKKMQEVEKRARD 97 +D + AK K + + +A + + A +++ + Sbjct: 84 KDHNDELTEELSNAKEKLRKNDKSLSEKASKI--QELEARKADLEKALEGAMNFSTADSA 141 Query: 98 KEQKLNDELSKVGKLEKDLDKKLSDLSRKEEQLEKKQEELSVAIAKKVELLEKVSGYSAE 157 K + L E + + + DL+K L K + L A ++ A Sbjct: 142 KIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELE--KAL 199 Query: 158 EAKEELVETMKSEAKTKAQSYVQNIMEEAQLNAKNEAKKIVIQTIQ 203 E ++ KT +A L E Sbjct: 200 EGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADS 245
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 31.0 bits (70), Expect = 0.007 Identities = 13/72 (18%), Positives = 23/72 (31%), Gaps = 10/72 (13%) Query: 163 VYLRF----GRPAVPVFMPEDMPFEIGKGILLQEGKDVTIVATGHLVW-ESLVAAEQL-- 215 V F G + + P G + + + IVA V+ + A ++ Sbjct: 786 VRAEFKARVGIKLLMTLTHNNKPLPFGAMVTSESSQSSGIVADNGQVYLSGMPLAGKVQV 845 Query: 216 ---EKEGISCEV 224 E+E C Sbjct: 846 KWGEEENAHCVA 857
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 83.7 bits (207), Expect = 2e-20 Identities = 68/336 (20%), Positives = 118/336 (35%), Gaps = 57/336 (16%) Query: 7 KILITGALGQIGTELTAKLVE----IYGKDNVIASGID-----KWREGITTAG-HYERID 56 K L+TGA G IG ++ +L+E + G DN + D E + G + +ID Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDN-LNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 57 VTNFKLLEDFIKENKITTVYHLASLLSGT--SEKQPLFAWKLNLEPLLHLCELAKEGYLK 114 + + + + D V+ S + P NL L++ E + ++ Sbjct: 61 LADREGMTDLFASGHFERVFISPHR-LAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQ 119 Query: 115 KIFWPSSIAVFGKGIPKHNVGQDVVLNPTTVYGISKMAGEKWCEYYHDKYGVDVRSIRY- 173 + + SS +V+G D V +P ++Y +K A E Y YG+ +R+ Sbjct: 120 HLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFF 179 Query: 174 ----PGLISWKAPAGGGTTDYAVEIFYEAVEKGE-YQCFISENTAMPMLYMDDAINATIK 228 P W P D A+ F +A+ +G+ + Y+DD A I+ Sbjct: 180 TVYGP----WGRP------DMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIR 229 Query: 229 LMQEPAENISVWGS--------------YNLGGMSFTP-AELTNEI-----KKVMPNFKI 268 L + W YN+G S + + + N Sbjct: 230 LQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLP 289 Query: 269 SYQPDFRQSIADSWPASIDDSKAKEDWGLSYEFDIK 304 D ++ AD+ E G + E +K Sbjct: 290 LQPGDVLETSADT-------KALYEVIGFTPETTVK 318
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 32.4 bits (73), Expect = 0.008 Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 6/118 (5%) Query: 432 NDNYSRSKNDLDSIRRKIRA-----AEKDAED-EYIANLRNEKTRLDNRVYSIDKEVYDL 485 N N +K +S + +I A A +DA Y NL+ K L +++ +++K + D Sbjct: 638 NKNKMEAKAQANSQKDEIFALINKEANRDARAIAYAQNLKGIKRELSDKLENVNKNLKDF 697 Query: 486 SEKIGSFKNEIKTLKQRQEELRKKIDDSRRYSDKDKITQRQIENLRNFIKDFKDATKK 543 + FKN + EE K + S + + ++ENL + +FK+ K Sbjct: 698 DKSFDEFKNGKNKDFSKAEETLKALKGSVKDLGINPEWISKVENLNAALNEFKNGKNK 755
>adhesinb#Adhesin B signature. Length = 310 Score = 32.1 bits (73), Expect = 0.002 Identities = 15/86 (17%), Positives = 37/86 (43%), Gaps = 12/86 (13%) Query: 208 EAKGKWELNPKQ---IEALKENLDYIKKRNIPYILVQAPITKKLYE--SKTNNKS----- 257 + WE+N ++ + +K ++ ++K +P + V++ + + + SK N Sbjct: 219 PSAYIWEINTEEEGTPDQIKTLVEKLRKTKVPSLFVESSVDDRPMKTVSKDTNIPIYAKI 278 Query: 258 -VDSLLSTMGTYKNFYGELPLN-DTI 281 DS+ ++Y + N + I Sbjct: 279 FTDSVAEKGEEGDSYYSMMKYNLEKI 304
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 41.9 bits (98), Expect = 1e-06 Identities = 38/190 (20%), Positives = 62/190 (32%), Gaps = 11/190 (5%) Query: 86 ILEQPKEETPPPPPPPKVEEEKIEIIQNVVPEPVKAPTVETPPPPISKQLETTTGLVNQE 145 ++ E P PP + E +PEP K V P + V + Sbjct: 54 MVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPK--PKPKPVKKV 111 Query: 146 GVKKPSYAPPPPPPSTGKGTTVEVKPQVSTTEVYTTVDQEAEFSGGGINGFRSAFQESFD 205 K P P++ T +P ST + G + Sbjct: 112 EQPKRDVKPVESRPASPFENTAPARPTSSTAT--AATSKPVTSVASGPRALSRNQPQYPA 169 Query: 206 TSVMEGDEGTLKAEVTFVVERDGSLSQVKVTGS--NSTFNREAERAVKSIKKKWTPGKVN 263 + EG +K V F V DG + V++ + + F RE + A++ ++ PGK Sbjct: 170 RAQALRIEGQVK--VKFDVTPDGRVDNVQILSAKPANMFEREVKNAMRR--WRYEPGKPG 225 Query: 264 GE-PVRSRFR 272 V F+ Sbjct: 226 SGIVVNILFK 235
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 67.3 bits (164), Expect = 2e-14 Identities = 32/167 (19%), Positives = 57/167 (34%), Gaps = 32/167 (19%) Query: 120 PTGLGSGVIISPDGYIISNNHVVAGASKLEVTLS------------NKKTYVAKLIGSDP 167 T + SGV++ D +++N HVV L N ++ Sbjct: 100 GTFIASGVVVGKD-TLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSG 158 Query: 168 STDIALLKIED--------SGLPYLNFANSDLLEVGQWVVAVGNPLGLNSTVTAGIVSAK 219 D+A++K + +N+ +V Q + G P A + +K Sbjct: 159 EGDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYPGDKPV---ATMWESK 215 Query: 220 GRSIDLLRQQSKTPIESFIQTDAVINRGNSGGALVNLSGDLVGINSA 266 G+ L +Q D GNSG + N +++GI+ Sbjct: 216 GKITYL--------KGEAMQYDLSTTGGNSGSPVFNEKNEVIGIHWG 254
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 27.6 bits (61), Expect = 0.006 Identities = 9/33 (27%), Positives = 20/33 (60%) Query: 37 LIISFVNIFPKFEGRGLGKALIREAISFAREHQ 69 +I + + + +G+G AL+ +AI +A+E+ Sbjct: 90 ALIEDIAVAKDYRKKGVGTALLHKAIEWAKENH 122
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 35.7 bits (82), Expect = 2e-04 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 8/90 (8%) Query: 6 NTIKIGTR--NSPLALWQAKEVAAALEQKNYATEIVPIVSSGDKNLTQPLYSLGITGVFT 63 T +IG+ N L+ +A+ V L K + + G+ N P+ V Sbjct: 260 YTDRIGSDAYNQGLSERRAQSVVDYLISKGIPADKISARGMGESN---PVTGNTCDNVKQ 316 Query: 64 KDLDIALL--NKQIDIAVHSLKDVPTQLPQ 91 + I L +++++I V +KDV TQ PQ Sbjct: 317 RAALIDCLAPDRRVEIEVKGIKDVVTQ-PQ 345
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 28.1 bits (62), Expect = 0.015 Identities = 16/81 (19%), Positives = 35/81 (43%), Gaps = 5/81 (6%) Query: 1 MAKKGRLSNKEREQK-KEYAKILFLQE--KNITIKDLAERVGVSVNTLSEWIKAEKWEGL 57 MA+K + +E Q + A LF Q+ + ++ ++A+ GV+ + K + L Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDK--SDL 58 Query: 58 RRNILLTRQEQLVQMQDELAE 78 I + + +++ E Sbjct: 59 FSEIWELSESNIGELELEYQA 79
>TYPE3OMGPROT#Type III secretion system outer membrane G protein family signature. Length = 607 Score = 28.7 bits (64), Expect = 0.009 Identities = 18/105 (17%), Positives = 40/105 (38%), Gaps = 13/105 (12%) Query: 50 DTFHDVLQQFNAEFTLSLVVKAGDTSSLTEENRREQAMAYLDLSEKIYSKLQGYEDGHF- 108 ++ D+L F A + ++VV ++ + + +L +Y+ L Y DG+ Sbjct: 43 ESLRDLLTDFGANYDATVVVSDKINDKVSGQFEHDNPQDFLQHIASLYN-LVWYYDGNVL 101 Query: 109 ----------ETFTFQSASEPNLRKGLKIVAL-RYSCGWKQEATK 142 Q + L++ L+ + GW+ +A+ Sbjct: 102 YIFKNSEVASRLIRLQESEAAELKQALQRSGIWEPRFGWRPDASN 146
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 30.6 bits (69), Expect = 0.022 Identities = 15/92 (16%), Positives = 33/92 (35%), Gaps = 7/92 (7%) Query: 563 NQNGEKYFVAYAEPKRSFEVVPKLMPDGEKEQAQKDMQVAELEYQRDLQLLRDLEKKTGI 622 +QN + Y+ Y + K+S E + + E+E + + + + +++ Sbjct: 380 SQNVQSYYKKYNKLKKSEEAANEQLLQNEEELNYLYSVLTNINNADNYDEIEEIK----- 434 Query: 623 STERLIAEQEMAVKTQNINSKKLNIKADRGES 654 + LI + K + K K S Sbjct: 435 --KELIETGYIKFKKIYKSKKSKTSKPMHFIS 464
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 51.1 bits (122), Expect = 1e-10 Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 7/96 (7%) Query: 53 EELQDEFSEFYFARVDGVLAGYLKLNFGVSQTELKDPKAIEIERIYVLKAFQGKRVGQAL 112 +++E + ++ G +K+ + L IE I V K ++ K VG AL Sbjct: 58 SYVEEEGKAAFLYYLENNCIGRIKIRSNWNGYAL-------IEDIAVAKDYRKKGVGTAL 110 Query: 113 YEHALQLARDRGVDYIWLGVWEQNHKAIRFYEKNGF 148 A++ A++ + L + N A FY K+ F Sbjct: 111 LHKAIEWAKENHFCGLMLETQDINISACHFYAKHHF 146
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 31.6 bits (71), Expect = 0.010 Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%) Query: 48 LKNWISKTKDL-EQSLNLEKEHYKAKTTENESLKDSLSKTSATLETAHSQVEELKTQLQT 106 +K+++S K+L ++LN K AK T N D + K LE + + E L+ +++ Sbjct: 574 IKDFLSSNKELVGKTLNFNKAVADAKNTGN---YDEVKKAQKDLEKSLRKREHLEKEVEK 630 Query: 107 QTLNLTQLQEKNQHYYAKISELSAKNETLEQSLVNQKKEIQELQEATKLQFENIANKILE 166 L AK S K+E +L+N++ ++A + + I Sbjct: 631 ---KLESKSGNKNKMEAKAQANSQKDEIF--ALINKEAN----RDARAIAYAQNLKGIKR 681 Query: 167 EKTEKFTSLNKENLGHILKPFQEKITELKNTVHETYDKEAKERFSLGAKVKELA 220 E ++K ++NK LK F + E KN ++ + K + +L VK+L Sbjct: 682 ELSDKLENVNKN-----LKDFDKSFDEFKNGKNKDFSKAEETLKALKGSVKDLG 730
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 151 bits (382), Expect = 8e-50 Identities = 47/140 (33%), Positives = 75/140 (53%) Query: 17 ITEKLNILLANYSIFYQNTRGAHWNIKGADFFTLHPKFEELYDSLVLKIDEIAERILTLG 76 + LN L+N+ + Y HW +KG FFTLH KFEELYD +D IAER+L +G Sbjct: 13 VENSLNTQLSNWFLLYSKLHRFHWYVKGPHFFTLHEKFEELYDHAAETVDTIAERLLAIG 72 Query: 77 ATPNHNYSDYLKVSSIKESKEVTDGNKCVEQILEAFKIVIDLQREILEIAGEAGDEGTNS 136 P +Y + +SI + T ++ V+ ++ +K + + ++ +A E D T Sbjct: 73 GQPVATVKEYTEHASITDGGNETSASEMVQALVNDYKQISSESKFVIGLAEENQDNATAD 132 Query: 137 QMSDYIKEQEKEVWMYNAFL 156 I+E EK+VWM +++L Sbjct: 133 LFVGLIEEVEKQVWMLSSYL 152
>BINARYTOXINB#Binary toxin B family signature. Length = 764 Score = 30.0 bits (67), Expect = 0.022 Identities = 10/15 (66%), Positives = 11/15 (73%) Query: 34 DLDSDNDGIPDSIEK 48 D DNDGIPDS+E Sbjct: 204 VPDRDNDGIPDSLEV 218
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 33.3 bits (76), Expect = 0.009 Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 10/58 (17%) Query: 1155 AVVTEID-GVVSYGKIK-RGNRELIVESKSGEIKKYLVKLSNQILVQENDFVRAGSPL 1210 +V+ +++ + GK+ G + I ++ +K +I+V+E + VR G L Sbjct: 75 SVLGQVEIVATANGKLTHSGRSKEIKPIENSIVK--------EIIVKEGESVRKGDVL 124
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 30.5 bits (69), Expect = 0.022 Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 10/89 (11%) Query: 639 GFHQYNAKIGYKKE---------FGKWSLDAYVAGNNLTNRVNYAFLFVGNAIGDTDLGN 689 G +KIG+K + + A +AG + +F+ + G +G Sbjct: 52 GIVDLGSKIGFKGQEDLGNGLKAIWQVEQKASIAGTDSGWGNRQSFIGLKGGFGKLRVGR 111 Query: 690 GY-PVGVTTDVNPGPARAYFFGGTTIKYS 717 + T D+NP +++ + G I Sbjct: 112 LNSVLKDTGDINPWDSKSDYLGVNKIAEP 140
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 85.9 bits (213), Expect = 7e-26 Identities = 29/89 (32%), Positives = 47/89 (52%) Query: 2 TKAELVNTISNKLGIEKNDTQKVIEAFMQEIRGSLYEGNNVYLRGFGSFIIKTRAAKTGR 61 K +L+ ++ + K D+ ++A + L +G V L GFG+F ++ RAA+ GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGR 62 Query: 62 NISKNTAIEIPAHNIPAFKPSKSFAERVK 90 N I+I A +PAFK K+ + VK Sbjct: 63 NPQTGEEIKIKASKVPAFKAGKALKDAVK 91
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 33.3 bits (76), Expect = 0.002 Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 4/126 (3%) Query: 48 LSIDPAQASLIYGYFTGFVYFTPLIGGWLADKFLGQRLSITIGGVLMMLGQFTLFAINTH 107 + PA + + F + G L+D+ +RL + G ++ G F ++ Sbjct: 44 FNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLL-FGIIINCFGSVIGFVGHSF 102 Query: 108 FGLYI-GLLLLIIGNGFFKPNISVLVGNLYEEGDERRDSAFSIFYMGINLGALIAPLVIG 166 F L I + G F + V+V + E R AF + + +G + P + G Sbjct: 103 FSLLIMARFIQGAGAAAFPALVMVVVARYIPK--ENRGKAFGLIGSIVAMGEGVGPAIGG 160 Query: 167 VLTDDI 172 ++ I Sbjct: 161 MIAHYI 166
>56KDTSANTIGN#Rickettsia 56kDa type-specific antigen protein signature. Length = 533 Score = 29.2 bits (65), Expect = 0.034 Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 12/77 (15%) Query: 43 QLHLDALPYYNFGKGVGITSPDSLFQFNIRFRMQNRLEADFNDNRSTEYKAAIRRLRLRF 102 Q++ D P F GI PD+ + N + ++ E + LR F Sbjct: 270 QIYSDIKP---FADIAGINVPDT--------GLPNSASIEQIQSKIQELGDTLEELRDSF 318 Query: 103 DGYVGNPRFLYAIQLSF 119 DGY+ N F+ I L+F Sbjct: 319 DGYINNA-FVNQIHLNF 334
>DPTHRIATOXIN#Diphtheria toxin signature. Length = 567 Score = 28.9 bits (64), Expect = 0.037 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 8/70 (11%) Query: 261 EIMQSLSHSPKLGHITTFGG-NPLIAAASYA----TLKEVLESELMEEVEEKEALFRQLL 315 E Q+ P+L + T G NP+ A A+YA + +V++SE + +E+ A L Sbjct: 281 EFHQTALEHPELSELKTVTGTNPVFAGANYAAWAVNVAQVIDSETADNLEKTTA---ALS 337 Query: 316 VHPKIKNING 325 + P I ++ G Sbjct: 338 ILPGIGSVMG 347
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 83.3 bits (206), Expect = 1e-20 Identities = 32/142 (22%), Positives = 62/142 (43%), Gaps = 3/142 (2%) Query: 1 MKGKRILLIDDEPDILEIISYNLKKEGYEVHTANNGNEGIEKAKEILPHLILLDVMMPDK 60 M G IL+ DD+ I +++ L + GY+V +N L++ DV+MPD+ Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 61 DGIETCQEIRKIATLEGCLIVFLSARGEEFSQLAGYQAGANDYIVKLIKPKVLISKV-NA 119 + + I+K ++ +SA+ + + + GA DY+ K LI + A Sbjct: 61 NAFDLLPRIKKA--RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRA 118 Query: 120 LMNLTQQVEEKNKILKIGHLII 141 L ++ + + G ++ Sbjct: 119 LAEPKRRPSKLEDDSQDGMPLV 140
>cdtoxina#Cytolethal distending toxin A signature. Length = 258 Score = 30.1 bits (67), Expect = 0.004 Identities = 11/27 (40%), Positives = 15/27 (55%) Query: 5 IILTGLLSLGLLTGCNSQKQNDMNEPK 31 I + G+L LL GC+S K +PK Sbjct: 8 IFIAGILIPILLNGCSSGKNKAYLDPK 34
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 32.9 bits (75), Expect = 0.002 Identities = 33/153 (21%), Positives = 61/153 (39%), Gaps = 17/153 (11%) Query: 32 GKVVIGQS----YMVDRLLVGLLGNGHILLEGVPGLAKTL---AIKTLSEALQGQFSRIQ 84 G ++G+S + L + + +++ G G K L A+ + G F I Sbjct: 136 GMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAIN 195 Query: 85 FTPDLLPADVVGTMIYNVKENDFSIKKGPVFANFVLA-------DEINRAPAKVQSALLE 137 +P D++ + ++ ++ F+ + F A DEI P Q+ LL Sbjct: 196 MAA--IPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLR 253 Query: 138 VMQEKQVT-IGDETLQLPKPFLVMATQNPIDQE 169 V+Q+ + T +G T +V AT + Q Sbjct: 254 VLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQS 286
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 171 bits (436), Expect = 3e-54 Identities = 60/296 (20%), Positives = 131/296 (44%), Gaps = 17/296 (5%) Query: 4 LKLIIISFTFLIINSCATVHDNNLKYQIEKIISSK-KGDFGISIIDENNN--IIEINGNK 60 ++ I + L+ VH + + K+ S+ G G+ +D + + ++ Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADE 60 Query: 61 SYPLLSTFKFPIALTILHKVENGELLMQQQIFIKKEELLENTWSPFKEKYPNGNISISLE 120 +P++STFK + +L +V+ G+ ++++I ++++L+ +SP EK+ ++ + Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLV--DYSPVSEKHLADGMT--VG 116 Query: 121 EALHWMIVYSDNNMTDILLRLIGGTNAVEKF---IDDENFVIKNNEDEMHKDWNSQFINK 177 E I SDN+ ++LL +GG + F I D + E E+++ + Sbjct: 117 ELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDT 176 Query: 178 STPNSFTKLLKNFSEGKMLNSENTKWLYESMVNSKTGVKRLKGKLP-NVKIAQRAGTSFT 236 +TP S L+ + L++ + + L + MV+ + ++ LP IA + G Sbjct: 177 TTPASMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTGA--- 233 Query: 237 NDDGITGAINNVGIMQLPNNQKIYITVFIHNTSEEFNKGEEIIADIAKTTYEFYTK 292 G GA V ++ N + + +++ +T + + IA I E + + Sbjct: 234 ---GERGARGIVALLGPNNKAERIVVIYLRDTPASMAERNQQIAGIGAALIEHWQR 286
>MECHCHANNEL#Bacterial mechano-sensitive ion channel signature. Length = 136 Score = 126 bits (319), Expect = 6e-41 Identities = 61/132 (46%), Positives = 82/132 (62%), Gaps = 10/132 (7%) Query: 1 MGFIKEFKEFALRGNVIDLAVGVIIGGAFGKIVNSFVEDVVTPALLSPALEKLG------ 54 M IKEF+EFA+RGNV+DLAVGVIIG AFGKIV+S V D++ P L + + Sbjct: 1 MSIIKEFREFAMRGNVVDLAVGVIIGAAFGKIVSSLVADIIMP-PLGLLIGGIDFKQFAV 59 Query: 55 --AENIAQLSWNGIKYGSFLSAVISFLCIAFVLFVMIKGINKM-KKEEKVEEAPAGPTQE 111 + + + YG F+ V FL +AF +F+ IK INK+ +K+E+ APA +E Sbjct: 60 TLRDAQGDIPAVVMHYGVFIQNVFDFLIVAFAIFMAIKLINKLNRKKEEPAAAPAPTKEE 119 Query: 112 ELLAEIRDLLKK 123 LL EIRDLLK+ Sbjct: 120 VLLTEIRDLLKE 131
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 37.5 bits (87), Expect = 9e-05 Identities = 52/245 (21%), Positives = 95/245 (38%), Gaps = 50/245 (20%) Query: 31 TIRKMLDTDRLNSLILWGPPGTGKTTLAEILSEQSGRK---FFKL--SAVSSGVKE---- 81 + +++ TD +L++ G GTGK +A L + R+ F + +A+ + E Sbjct: 152 VLARLMQTDL--TLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELF 209 Query: 82 --VREVIDDAKKQH--LF---SGKSPILFIDEIHRFNKSQQDSLLHAVEKGWVILIGATT 134 + A+ + F G + LF+DEI Q LL +++G +G T Sbjct: 210 GHEKGAFTGAQTRSTGRFEQAEGGT--LFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRT 267 Query: 135 ENPS-FEVVSA-----------------LLSRSQVY--ILKPLSYEKLEELATIA---VA 171 S +V+A L R V L PL ++ E++ + V Sbjct: 268 PIRSDVRIVAATNKDLKQSINQGLFREDLYYRLNVVPLRLPPLR-DRAEDIPDLVRHFVQ 326 Query: 172 RFNQD--ENTDFTIENNQGFIQYS-GGDARKLINSVEWVLNQYKGSGQNQLSSETILKVL 228 + ++ + F E + + G+ R+L N V + Y + ++ E I L Sbjct: 327 QAEKEGLDVKRFDQEALELMKAHPWPGNVRELENLVRRLTALYPQ---DVITREIIENEL 383 Query: 229 QETIP 233 + IP Sbjct: 384 RSEIP 388
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 36.3 bits (84), Expect = 7e-05 Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%) Query: 1 MKYIIVGLGNF-GASLAQKLTVQGNEVIGIDN 31 MKY++ G F G ++++L G++V+GIDN Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDN 32
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 78.9 bits (194), Expect = 2e-19 Identities = 49/194 (25%), Positives = 90/194 (46%), Gaps = 3/194 (1%) Query: 2 SKKFQHKNILITGGASGIGKIMARLSLEKGAKVIIWDIDQSKIDETILQFSSLG-SIFGY 60 +K + K ITG A GIG+ +AR +GA + D + K+++ + + + Sbjct: 3 AKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAF 62 Query: 61 KVDVSNYDEVQHFAIKTKQKIGNVDILINNAGIVVGKYFHEHSQKDILKTIEINTNAPMV 120 DV + + + ++++G +DIL+N AG++ H S ++ T +N+ Sbjct: 63 PADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFN 122 Query: 121 ITNLFLQDMLTQNSGHICNIASSAGLVSNPKMSVYAGSKWAVVGWSDSLRLEMEQLKKNI 180 + + M+ + SG I + S+ V M+ YA SK A V ++ L LE+ + NI Sbjct: 123 ASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAE--YNI 180 Query: 181 KVTTIMPYYINTGM 194 + + P T M Sbjct: 181 RCNIVSPGSTETDM 194
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 62.5 bits (152), Expect = 9e-13 Identities = 56/216 (25%), Positives = 90/216 (41%), Gaps = 23/216 (10%) Query: 151 KRLEANFHVVVGQMSSIKNIS-RCVKE----AGLEMESLTLEPLASSEAVLTKEEKEAGV 205 + + V+V + R ++E AG L EP+A++ + G Sbjct: 102 SFMRPSPRVLVCVPVGATQVERRAIRESAQGAGAREVFLIEEPMAAAIGAGLPVSEATGS 161 Query: 206 AIVDIGGGTTDIAIFKDNIIRHTCVIPYGGGIITEDI------KDGCSIIEKHAEQLKVR 259 +VDIGGGTT++A+ N + ++ + GG E I G I E AE++K Sbjct: 162 MVVDIGGGTTEVAVISLNGVVYSSSVRIGGDRFDEAIINYVRRNYGSLIGEATAERIKHE 221 Query: 260 FGSAVPELEKESTFVTIPGLHGRTEKEISLKTLAKIIHARVEEILEMVNTELKAYGAHEK 319 GSA P E V GR E + + +E + E + + A + Sbjct: 222 IGSAYPGDEVREIEV-----RGRNLAEGVPRGFTLNSNEILEALQEPLTGIVSAVMVALE 276 Query: 320 KRK--LIA-----GIVLTGGGSNLKHLRQLANYITG 348 + L + G+VLTGGG+ L++L +L TG Sbjct: 277 QCPPELASDISERGMVLTGGGALLRNLDRLLMEETG 312
>TOXICSSTOXIN#Staphylococcal toxic shock syndrome toxin signature. Length = 234 Score = 28.8 bits (64), Expect = 0.013 Identities = 29/149 (19%), Positives = 53/149 (35%), Gaps = 25/149 (16%) Query: 81 QRVPVFRLSKGKKEFYVDEKGVEFPINRNYSASCMLISGNVQPEEYPQLIE--LVKKINQ 138 P F + K + Y ISG E+ P IE L K++ Sbjct: 91 YYSPAFTKGEKVDLNTKRTKKSQHTSEGTYIHFQ--ISGVTNTEKLPTPIELPLKVKVHG 148 Query: 139 DDFSKKFFIGVVKERENYYLIANEENYRVELGSLENIDFKVKGFKAFVEKYLVYQPSDK- 197 D K+ ++ ++ +DF+++ + + +Y+ SDK Sbjct: 149 KDSPLKY----------GPKFDKKQL------AISTLDFEIR--HQLTQIHGLYRSSDKT 190 Query: 198 --YTKISLKYDNQIVTTLSKGYKEETYKE 224 Y KI++ + + LSK ++ T K Sbjct: 191 GGYWKITMNDGSTYQSDLSKKFEYNTEKP 219
>SALSPVBPROT#Salmonella virulence plasmid 65kDa B protein signature. Length = 591 Score = 29.7 bits (66), Expect = 0.024 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%) Query: 160 KDYSVVEADEYDRSFLNLAPDWAIITSTDADHLDIYGDKSTIEKGFRDFAHLVSEERQLF 219 K+Y+ + D++F++ +PD A I T L+IY +K + D AH E LF Sbjct: 485 KEYTTIGNIIIDKAFMSTSPDKAWINDTI---LNIYLEKGHKGRILGDVAHFKGEAEMLF 541
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 50.2 bits (120), Expect = 6e-09 Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 6/95 (6%) Query: 59 EVRAQGKGFLDKIYVDEGQYVKAGQVLFRIMPQVYEAELMKTRAEVEQARIEYQNASILA 118 E++ + +I V EG+ V+ G VL ++ EA+ +KT++ + QAR+E Sbjct: 98 EIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLE--QTRYQI 155 Query: 119 GNNIVSKNE----KALAKAKLDAASAEMRMAQLHL 149 + + N+ K + S E + L Sbjct: 156 LSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSL 190 Score = 39.0 bits (91), Expect = 2e-05 Identities = 25/109 (22%), Positives = 51/109 (46%), Gaps = 8/109 (7%) Query: 75 EGQYVKAGQVLFRIMPQVYEAELMKTRAEVEQARIEYQNASILAGNNIVSKNEKALAKAK 134 E +YV+A L +VY+++L + +E+ A+ EYQ + L N I+ K + Sbjct: 258 ENKYVEAVNEL-----RVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQT--TDN 310 Query: 135 LDAASAEMRMAQLHLSFTTIRAPFSGIINRIPLK-LGSLIEEGDLLTSL 182 + + E+ + + IRAP S + ++ + G ++ + L + Sbjct: 311 IGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVI 359
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 912 bits (2358), Expect = 0.0 Identities = 378/1039 (36%), Positives = 588/1039 (56%), Gaps = 15/1039 (1%) Query: 1 MFKTFIKRPVLSIVISLIIVFLGVLSLLSLPITQFPSISPPKVNITAEYPGANNELLVKS 60 M FI+RP+ + V+++I++ G L++L LP+ Q+P+I+PP V+++A YPGA+ + + + Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VVIPLEQALNGVQGMKYITSDAGNDGVASIQVVFNLGTDPNLAAVNVQNRVSSAINKLPP 120 V +EQ +NG+ + Y++S + + G +I + F GTDP++A V VQN++ A LP Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 121 LVVREGVKITREEPNMLMYVNLYSDDPKADQKFLFNYADINILPELRRVNGVGFADILGT 180 V ++G+ + + + LM SD+P Q + +Y N+ L R+NGVG + G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG- 179 Query: 181 REYAMRIWLKPDRLTAYNISTDEVMEALSSQSLEASPGRTGESSGKRSQAFEYVLKYPGR 240 +YAMRIWL D L Y ++ +V+ L Q+ + + G+ G + Q + R Sbjct: 180 AQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 241 FDNEKDYGNIIVKANSNGEFVRLKDVADVEFGSSMYDIYSTLNGKPSAAITIKQSYGSNA 300 F N +++G + ++ NS+G VRLKDVA VE G Y++ + +NGKP+A + IK + G+NA Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 301 SEVIKNVKTLLEELNKTSFPKGMHYEISYDVSRFLDASMEKVVHTLFEAFVLVGIVVFIF 360 + K +K L EL + FP+GM YD + F+ S+ +VV TLFEA +LV +V+++F Sbjct: 300 LDTAKAIKAKLAEL-QPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLF 358 Query: 361 LGDWRSTLIPALAVPVSLIGAFAVMSSFGITVNMITLFALVMAIGVVVDDAIVVIEAVHA 420 L + R+TLIP +AVPV L+G FA++++FG ++N +T+F +V+AIG++VDDAIVV+E V Sbjct: 359 LQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER 418 Query: 421 KMEEKHLSPLEATQEAMGEISGAIIAITLVMAAVFIPVAFMSGPVGVFYRQFSITMASSI 480 M E L P EAT+++M +I GA++ I +V++AVFIP+AF G G YRQFSIT+ S++ Sbjct: 419 VMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAM 478 Query: 481 ILSGIVALTLTPALCALILKNNHGKERKKTPINRFIDGFNRVFAKGTKRYETLLYKTVSK 540 LS +VAL LTPALCA +LK F FN F Y + K + Sbjct: 479 ALSVLVALILTPALCATLLKPV--SAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGS 536 Query: 541 KWITLGGLSVFCFLVYFLNNGLPSGFIPNEDQGMIYAIVQTPPGSTIERTNQQALKIQKI 600 L ++ + L LPS F+P EDQG+ ++Q P G+T ERT + ++ Sbjct: 537 TGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDY 596 Query: 601 A--EGIDGVKSVSSLAGYEILSEGTGANSGTCLINLKNWDERDK---SATEIIEELEEKC 655 V+SV ++ G+ G N+G ++LK W+ER+ SA +I + + Sbjct: 597 YLKNEKANVESVFTVNGF--SFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMEL 654 Query: 656 KDIGGSNIEFFQPPSIPGYGAAGGFELRLLDKTGSNDYAKMEEVSRNFVKELSKRP-ELA 714 I + F P+I G A GF+ L+D+ G + + + + ++ P L Sbjct: 655 GKIRDGFVIPFNMPAIVELGTATGFDFELIDQAG-LGHDALTQARNQLLGMAAQHPASLV 713 Query: 715 SVFTFYSASFPQYMLKVDNDIAEQKGVSIGSAMNNLSTLIGSNYETGFIRFGKPYKVIVQ 774 SV Q+ L+VD + A+ GVS+ +ST +G Y FI G+ K+ VQ Sbjct: 714 SVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQ 773 Query: 775 AAPQYRALPQDIMNLYVKNDKEEMVPYSDFMHMEKVYGMSEITRHNMYNSAQISGYPSEG 834 A ++R LP+D+ LYV++ EMVP+S F VYG + R+N S +I G + G Sbjct: 774 ADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPG 833 Query: 835 YSSGQAIEAIKETADKTLPRGYGIDWAGISKDEVGRGNEAVYIFLICLGFVYLILSAQYE 894 SSG A+ ++ A K LP G G DW G+S E GN+A + I V+L L+A YE Sbjct: 834 TSSGDAMALMENLASK-LPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYE 892 Query: 895 SFILPLPVILCLPAGIFGAFLFLKLFGLENNIYAQVALVMLIGLLGKNAVLIVEYAVQRK 954 S+ +P+ V+L +P GI G L LF +N++Y V L+ IGL KNA+LIVE+A Sbjct: 893 SWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLM 952 Query: 955 -NEGATILKAAIEGAVTRFRPILMTSFAFIAGLIPLALATGPGAIGNRTIGTAAAGGMFI 1013 EG +++A + R RPILMTS AFI G++PLA++ G G+ +G GGM Sbjct: 953 EKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVS 1012 Query: 1014 GTIFGVVLIPGLYLIFGKI 1032 T+ + +P +++ + Sbjct: 1013 ATLLAIFFVPVFFVVIRRC 1031
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 31.7 bits (72), Expect = 0.006 Identities = 24/139 (17%), Positives = 42/139 (30%), Gaps = 19/139 (13%) Query: 180 LSSLIAEVAQSYYELLALDSQYSYLKKYIELQRKALEVSKIQKQAAATTELSVKKFEAEL 239 L AE + ++ K ++ L I K A E + EL Sbjct: 209 LDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNEL 268 Query: 240 AKSSANLYTVQQSILEKENDINLLLGRFYQPIPRSSAEFLELVPQSIKTGIPSELLANRP 299 + L ++ IL + + +LV Q K I +L Sbjct: 269 RVYKSQLEQIESEILSAKEEY-------------------QLVTQLFKNEILDKLRQTTD 309 Query: 300 DVKQAELELEAAKLDVEAA 318 ++ LEL + +A+ Sbjct: 310 NIGLLTLELAKNEERQQAS 328
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 39.1 bits (91), Expect = 9e-06 Identities = 22/124 (17%), Positives = 43/124 (34%), Gaps = 4/124 (3%) Query: 201 FEYGQFYFNRKNYEEAIRGFDYLLAINSNSVGVYANKAACYEAMQEWDKAVEVYEEMLEL 260 + + YE+A + F L ++ + AC +AM ++D A+ Y + Sbjct: 40 YSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIM 99 Query: 261 EYTKAYTYYKIGLCHKENKKPLLALKSFQKSLVEDPQFYLSMMEQSFLYEEMGQMREALH 320 + + + C + + A + L + E L + M EA+ Sbjct: 100 DIKEPRFPFHAAECLLQKGELAEA----ESGLFLAQELIADKTEFKELSTRVSSMLEAIK 155 Query: 321 FAKE 324 KE Sbjct: 156 LKKE 159 Score = 32.2 bits (73), Expect = 0.002 Identities = 16/97 (16%), Positives = 33/97 (34%) Query: 307 FLYEEMGQMREALHFAKEATVLNETNVDYQKRLAFLYIDSELFEESLPCLEKMVEAEPDR 366 F + G+ +A + VL+ + + L ++ ++ + Sbjct: 44 FNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIKE 103 Query: 367 FYNWYAYTEVLMLVGQYNKALEILQKAISLHKDRAEF 403 + E L+ G+ +A L A L D+ EF Sbjct: 104 PRFPFHAAECLLQKGELAEAESGLFLAQELIADKTEF 140 Score = 32.2 bits (73), Expect = 0.002 Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 7/69 (10%) Query: 252 EVYEEMLELEYTKAYTYYKIGLCHKENKKPLLALKSFQKSLVEDPQFYLSMMEQSFLYEE 311 E+ + LE Y+ A+ Y+ G K A K FQ V D + + Sbjct: 30 EISSDTLEQLYSLAFNQYQSG-------KYEDAHKVFQALCVLDHYDSRFFLGLGACRQA 82 Query: 312 MGQMREALH 320 MGQ A+H Sbjct: 83 MGQYDLAIH 91 Score = 29.1 bits (65), Expect = 0.025 Identities = 16/88 (18%), Positives = 26/88 (29%) Query: 173 FYKLNKNDDAIKFLNHYIEEFPFSETAWFEYGQFYFNRKNYEEAIRGFDYLLAINSNSVG 232 Y+ K +DA K + + G Y+ AI + Y ++ Sbjct: 46 QYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIKEPR 105 Query: 233 VYANKAACYEAMQEWDKAVEVYEEMLEL 260 + A C E +A EL Sbjct: 106 FPFHAAECLLQKGELAEAESGLFLAQEL 133
>PF03309#Bvg accessory factor Length = 271 Score = 196 bits (501), Expect = 1e-64 Identities = 75/257 (29%), Positives = 125/257 (48%), Gaps = 16/257 (6%) Query: 4 IVVNIGNTNIRFGLFNNEGCSL----SWVINTKPYRTKDELFVQFLMHYQSYDIKPKEID 59 + +++ NT+ GL + G W I T+P T DEL + + + Sbjct: 3 LAIDVRNTHTVVGLISGSGDHAKVVQQWRIRTEPEVTADELALTID---GLIGDDAERLT 59 Query: 60 QLIIGSVVPQMTNDIVRALEKIHHLKPILV---DRNTPSEVKPKS-KQMGTDIYANLVAA 115 S VP + +++ LE+ P ++ T + + K++G D N +AA Sbjct: 60 GASGLSTVPSVLHEVRVMLEQYWPNVPHVLIEPGVRTGIPLLVDNPKEVGADRIVNCLAA 119 Query: 116 HHLYPNKSKIIFDFGTALTASCISHSGETLGAIIAPGIITSLKSLIQDTAQLLEIELQAP 175 +H Y + I+ DFG+++ +S GE LG IAPG+ S + +A L +EL P Sbjct: 120 YHKYG-TAAIVVDFGSSICVDVVSAKGEFLGGAIAPGVQVSSDAAAARSAALRRVELTRP 178 Query: 176 KSVLGLDTVSCMQSGMVYGYLGMVEGFIERINREI----GEETFVIATGGVSHVYKPLSD 231 +SV+G +TV CMQ+G V+G+ G+V+G + RI ++ G + V+ATG + + P Sbjct: 179 RSVIGKNTVECMQAGAVFGFAGLVDGLVNRIRDDVDGFSGADVAVVATGHTAPLVLPDLR 238 Query: 232 KIHIADRLHTLKGLYFL 248 + DR TL GL + Sbjct: 239 TVEHYDRHLTLDGLRLV 255
>PF06580#Sensor histidine kinase Length = 349 Score = 39.8 bits (93), Expect = 2e-05 Identities = 30/189 (15%), Positives = 72/189 (38%), Gaps = 35/189 (18%) Query: 319 SGLIKQENLRMKKQVENVLNMSKLERNEMKLF-LRETNLRELIRNIANSVRLIVNERGGR 377 LI ++ K E + ++S+L R ++ R+ +L + + + + ++L + R Sbjct: 183 RALILEDP---TKAREMLTSLSELMRYSLRYSNARQVSLADELTVVDSYLQLASIQFEDR 239 Query: 378 LT--EDFKAERYNLKVDEFHLSNTLINLLDNANKY----SPDKPEIKIATRNEGNYYVIE 431 L +++V + L++N K+ P +I + + +E Sbjct: 240 LQFENQINPAIMDVQVPPM----LVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLE 295 Query: 432 ISDKGMGMEPQNKTKIFEKFFREETGNVHNVKGQGLGLSYVKKIIELHKG---QISVETQ 488 + + G K + G GL V++ +++ G QI + + Sbjct: 296 VENTGSLALKNTK------------------ESTGTGLQNVRERLQMLYGTEAQIKLSEK 337 Query: 489 KGKGSTFIV 497 +GK + ++ Sbjct: 338 QGKVNAMVL 346
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 91.4 bits (227), Expect = 1e-23 Identities = 34/128 (26%), Positives = 64/128 (50%) Query: 4 RILLVEDDQSFGAVLKDYLSINNFEVTLATDGEEGLKEYTNNDFDICIFDVMMPKKDGFT 63 IL+ +DD + VL LS ++V + ++ + D D+ + DV+MP ++ F Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 64 LAEDVKKLGKNIPIIFLTARNLREDILKGYQLGADDYITKPFDTELLLYKIKAILSRSTS 123 L +KK ++P++ ++A+N +K + GA DY+ KPFD L+ I L+ Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 124 LEEEEQEQ 131 + ++ Sbjct: 125 RPSKLEDD 132
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 28.7 bits (64), Expect = 0.040 Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 6/49 (12%) Query: 26 ALQILCAVLLTDQEVRIKNIPDIQDV--NKLIGILGDLGVKVTKNGKGD 72 AL L RIK+I +Q N+LIG G+ V G GD Sbjct: 15 ALPFLSTPPAQADTSRIKDIASLQAGRDNQLIGY----GLVVGLQGTGD 59
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 373 bits (959), Expect = e-131 Identities = 128/351 (36%), Positives = 192/351 (54%), Gaps = 37/351 (10%) Query: 5 TYLVTGGSGFIGSHLVEALLKNGHFVINVDNFDDFYNYKTKINNTLESLGITTNFDFENK 64 YLVTG +GFIG H+ + LL+ GH V+ +DN +D+Y+ K LE L Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLK-QARLELLA---------- 50 Query: 65 NLDIKKLASLVNKGNYKFYYQDIRDKEGLEKIFKNHRPDVVIHLAALAGVRPSIERPLEY 124 + ++F+ D+ D+EG+ +F + + V VR S+E P Y Sbjct: 51 ------------QPGFQFHKIDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAY 98 Query: 125 QEVNIKGTMNIWEVAKDLGICKFVIASSSSVYGNNEKIPFSEEDNVDRPISPYAATKKCV 184 + N+ G +NI E + I + ASSSSVYG N K+PFS +D+VD P+S YAATKK Sbjct: 99 ADSNLTGFLNILEGCRHNKIQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKAN 158 Query: 185 EVLGHTYHHLYGMDMVQLRFFTVYGPRQRPDLAIHKFAKIIKDNKQVPFYGDGNTARDYT 244 E++ HTY HLYG+ LRFFTVYGP RPD+A+ KF K + + K + Y G RD+T Sbjct: 159 ELMAHTYSHLYGLPATGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFT 218 Query: 245 FVDDIIDGIMKSIKYVEE--------------NAGVYEIFNLGESEVIPLHKMLSTIEEE 290 ++DDI + I++ + + Y ++N+G S + L + +E+ Sbjct: 219 YIDDIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDA 278 Query: 291 LGVKATLNKLPMQAGDVQKTNADIRKAQQKIGYAPTTNFQNGIKKFVEWFL 341 LG++A N LP+Q GDV +T+AD + + IG+ P T ++G+K FV W+ Sbjct: 279 LGIEAKKNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYR 329
>SECA#SecA protein signature. Length = 901 Score = 860 bits (2223), Expect = 0.0 Identities = 392/1051 (37%), Positives = 537/1051 (51%), Gaps = 254/1051 (24%) Query: 4 LNTILKSFLGNKNEKDLKEVKKVVAKIKAVEPEVGKLSDDGLRQKTEEFQNKIKEATSKI 63 L +L G++N++ L+ ++KVV I A+EPE+ KLSD+ L+ KT EF+ ++++ Sbjct: 2 LIKLLTKVFGSRNDRTLRRMRKVVNIINAMEPEMEKLSDEELKGKTAEFRARLEKGEV-- 59 Query: 64 TSQVEELKEKIKTSKDVDEKEALFNKIEELKKEAYQIEEKVLTDILPEAFAVLKETARRW 123 L +++PEAFAV++E ++R Sbjct: 60 -----------------------------------------LENLIPEAFAVVREASKR- 77 Query: 124 AQNGEIRVKANDRDRALAATKDFVVIEGDEAVWLNHWDAAGTKVQWDMVHYDVQFIGGVV 183 + M H+DVQ +GG+V Sbjct: 78 --------------------------------------------VFGMRHFDVQLLGGMV 93 Query: 184 LHGGKIAEMATGEGKTLVGTLPIYLNALPGRGVHVVTVNDYLARRDSAWMGPLYEFHGLS 243 L+ IAEM TGEGKTL TLP YLNAL G+GVHVVTVNDYLA+RD+ PL+EF GL+ Sbjct: 94 LNERCIAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLT 153 Query: 244 IDCIDNHQPNSDARRKAYQCNITYGTNNEFGFDYLRDNMVNSPNEMVQGELNYAIVDEVD 303 + P + A+R+AY +ITYGTNNE+GFDYLRDNM SP E VQ +L+YA+VDEVD Sbjct: 154 VGINLPGMP-APAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVD 212 Query: 304 SVLIDDARTPLIISGPVPQGDRQEFDVLKPSVDRIVDVQKKTVSAIFHEAKKLIAQGNTK 363 S+LID+ARTPLIISGP + S ++ K+I Sbjct: 213 SILIDEARTPLIISGPA-----------------------EDSSEMYKRVNKIIP----- 244 Query: 364 EGGFKLLQAYRGLPKNRQLIKFLSETGNKALLQKVEAQYMQDNNREMPKVDKDLYFVIDE 423 + + E + + F +DE Sbjct: 245 -----------------------------------HLIRQEKEDSETFQGEGH--FSVDE 267 Query: 424 KNNQIDLTDKGVEYMSQGNSDPNFFVLQDIGTELAELEAQNLPKEEEFAKKEELFRDFAV 483 K+ Q++LT++G+ + + + D G L L Sbjct: 268 KSRQVNLTERGLVLIEELLVKEG---IMDEGESLYSPANIML------------------ 306 Query: 484 KSERIHTLNQLLKAYTLFEKDDQYVVMDGEVKIVDEQTGRIMEGRRYSDGLHQAIEAKEN 543 +H + L+A+ LF +D Y+V DGEV IVDE TGR M+GRR+SDGLHQA+EAKE Sbjct: 307 ----MHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEG 362 Query: 544 VKIEAATQTFATITLQNYFRMYNKLAGMTGTAETESGEFWEIYRLDVVVIPTNRPIQRND 603 V+I+ QT A+IT QNYFR+Y KLAGMTGTA+TE+ EF IY+LD VV+PTNRP+ R D Sbjct: 363 VQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKD 422 Query: 604 KHDLVYKTNREKYNAVIEEVEKLTSAGRPVLVGTTSVEISQLLSKALQLRKIPHQVLNAK 663 DLVY T EK A+IE++++ T+ G+PVLVGT S+E S+L+S L I H VLNAK Sbjct: 423 LPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAK 482 Query: 664 LHKKEAEIVAEAGRAGVVTIATNMAGRGTDIKL--------------------------- 696 H EA IVA+AG VTIATNMAGRGTDI L Sbjct: 483 FHANEAAIVAQAGYPAAVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQ 542 Query: 697 --SKEVKDAGGLAIIGTERHDSRRVDRQLRGRAGRQGDPGSSQFYVSLEDNLMRLFGSER 754 V +AGGL IIGTERH+SRR+D QLRGR+GRQGD GSS+FY+S+ED LMR+F S+R Sbjct: 543 VRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDALMRIFASDR 602 Query: 755 IAKMMDRLGHKEGEVIQHSMITKSIERAQKKVEENNFGIRKRLLEYDDVMNKQRDVIYKR 814 ++ MM +LG K GE I+H +TK+I AQ+KVE NF IRK+LLEYDDV N QR IY + Sbjct: 603 VSGMMRKLGMKPGEAIEHPWVTKAIANAQRKVESRNFDIRKQLLEYDDVANDQRRAIYSQ 662 Query: 815 RKNALFGDHLKYDIANMIFDVSHSIVNQTKMHGDYKDFEFEVIKYFTMEAPVSEADFKNK 874 R L + I ++ DV + ++ + E+ ++ + + Sbjct: 663 RNELLDVSDVSETINSIREDVFKATIDAYIPPQSLE----EMWDIPGLQERLKNDFDLDL 718 Query: 875 TVKELTDVVFKKAQEDYEMKLNLLKEKSFPIIENVYQNQGNMFKMIQVPFSDGTKTMTIL 934 + E D ++ E+ L+E+ IL Sbjct: 719 PIAEWLD-------KEPELHEETLRER-------------------------------IL 740 Query: 935 ADLKEAYETQCDSL----INDFEKNICLSIIDENWKLHLREMDDLRRSSQGAVYEQKDPL 990 A E Y+ + + + + FEK + L +D WK HL MD LR+ Y QKDP Sbjct: 741 AQSIEVYQRKEEVVGAEMMRHFEKGVMLQTLDSLWKEHLAAMDYLRQGIHLRGYAQKDPK 800 Query: 991 VIYKQESFHLFSEMVDKINKEIISFLYKGEI 1021 YK+ESF +F+ M++ + E+IS L K ++ Sbjct: 801 QEYKRESFSMFAAMLESLKYEVISTLSKVQV 831
>INTIMIN#Intimin signature. Length = 939 Score = 27.0 bits (59), Expect = 0.022 Identities = 15/69 (21%), Positives = 23/69 (33%), Gaps = 7/69 (10%) Query: 56 HHSHFSTQKHYKSFFSASYFVLPKLVNIPSLLKHKR-------EKKIADYRKWQIVKYTF 108 + +S Q Y+ S + P+ VN L R I +Y+K I+ Sbjct: 399 NDLLYSMQFRYQFDKPWSQQIEPQYVNELRTLSGSRYDLVQRNNNIILEYKKQDILSLNI 458 Query: 109 THSNRGPPH 117 H G Sbjct: 459 PHDINGTER 467
>PF03309#Bvg accessory factor Length = 271 Score = 35.5 bits (82), Expect = 2e-04 Identities = 25/148 (16%), Positives = 51/148 (34%), Gaps = 27/148 (18%) Query: 10 MALGIDIGGTDTKFGLVN---HRGEILGKGRIKTDYDEIDDFINALYKEIEPILEQHNAK 66 M L ID+ T T GL++ +++ + RI+T+ + D + L +A+ Sbjct: 1 MLLAIDVRNTHTVVGLISGSGDHAKVVQQWRIRTEPEVTADELALTIDG----LIGDDAE 56 Query: 67 SQLEGIGIG--APNGNYYKGTIENAPNLKWKGIVPLAEKMTAKFGVQCKVTND------- 117 +L G P+ + + W + + + + G+ V N Sbjct: 57 -RLTGASGLSTVPSVLH---EVRVMLEQYWPNVPHVLIEPGVRTGIPLLVDNPKEVGADR 112 Query: 118 -ANAAAYGEMMFGAARGMKDFIMITLGT 144 N A + I++ G+ Sbjct: 113 IVNCLA------AYHKYGTAAIVVDFGS 134
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 32.5 bits (74), Expect = 0.003 Identities = 35/169 (20%), Positives = 64/169 (37%), Gaps = 19/169 (11%) Query: 2 SNIVAIVGRPNVGKSTLFNRLLERREAIVDSVAGVTRDRHYGKSEWNGVEFTVIDTGGYD 61 S + +G + G + N LLER+ I + W + +IDT G+ Sbjct: 27 SGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQ-------WENTKVNIIDTPGH- 78 Query: 62 VGTDDIFEEEIRHQVQLAVDEATSIIFMLNVEEGLTDTDQEIHELLRRSNKPIYIVVNKV 121 D + E V +D A I +++ ++G+ + + LR+ P +NK+ Sbjct: 79 --MDFLAEVYRSLSV---LDGA---ILLISAKDGVQAQTRILFHALRKMGIPTIFFINKI 130 Query: 122 DSAKEELPATEFYQLGIEKYYTLSSATGSGTGDLLDAVVADFPTTEYKD 170 D +L YQ I++ + + V +F +E D Sbjct: 131 DQNGIDLSTV--YQ-DIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWD 176 Score = 31.0 bits (70), Expect = 0.010 Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 30/138 (21%) Query: 178 ITIAGRPNVGKSTLTNALLDNKRNI----VTDIAGTTRDSIE-------------TIYNK 220 I + + GK+TLT +LL N I D T D+ T + Sbjct: 6 IGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW 65 Query: 221 FGHEFVLVDTAGMRKKSKVSENLEFYS-VMRSVRAIEHSDVVVIMVDATQGWESQDMNIF 279 + ++DT G +++F + V RS+ + D ++++ A G ++Q +F Sbjct: 66 ENTKVNIIDTPG---------HMDFLAEVYRSLSVL---DGAILLISAKDGVQAQTRILF 113 Query: 280 GIAQKNRKGIVILVNKWD 297 +K + +NK D Sbjct: 114 HALRKMGIPTIFFINKID 131
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 362 bits (930), Expect = e-127 Identities = 159/339 (46%), Positives = 221/339 (65%), Gaps = 9/339 (2%) Query: 3 LFDLFTQEIAIDLGTANTLIIHNNK-IVIDQPSIVAIDRQSGRP----IAVGEQAKHMQG 57 +F+ +++IDLGTANTLI + IV+++PS+VAI + AVG AK M G Sbjct: 5 FRGMFSNDLSIDLGTANTLIYVKGQGIVLNEPSVVAIRQDRAGSPKSVAAVGHDAKQMLG 64 Query: 58 KTHEDIRTVRPLKDGVIADFHASEHMIKEFIKQIPGIKGKLFQPALKIVICIPSGITEVE 117 +T +I +RP+KDGVIADF +E M++ FIKQ+ +P+ ++++C+P G T+VE Sbjct: 65 RTPGNIAAIRPMKDGVIADFFVTEKMLQHFIKQV--HSNSFMRPSPRVLVCVPVGATQVE 122 Query: 118 KRAVRDSAQKVNAKEVRLIYEPMAAAIGVGIDVQKPEGNMIIDIGGGTTEIAVVALGGIV 177 +RA+R+SAQ A+EV LI EPMAAAIG G+ V + G+M++DIGGGTTE+AV++L G+V Sbjct: 123 RRAIRESAQGAGAREVFLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNGVV 182 Query: 178 CDKSVKIAGDVFTNDIAYYLRTHHNLFIGERTAERIKIEVGSAVEELDIDIEDIPVQGRD 237 SV+I GD F I Y+R ++ IGE TAERIK E+GSA ++ +I V+GR+ Sbjct: 183 YSSSVRIGGDRFDEAIINYVRRNYGSLIGEATAERIKHEIGSAYP--GDEVREIEVRGRN 240 Query: 238 LITGKPKEIMIGYKEIARALDKSIIRIEDAVMETLSMTPPELAADIYKTGIYLAGGGALL 297 L G P+ + EI AL + + I AVM L PPELA+DI + G+ L GGGALL Sbjct: 241 LAEGVPRGFTLNSNEILEALQEPLTGIVSAVMVALEQCPPELASDISERGMVLTGGGALL 300 Query: 298 RGLADRLHKKTGLPVFVAEDPLRAVVRGTGIALKNMDKF 336 R L L ++TG+PV VAEDPL V RG G AL+ +D Sbjct: 301 RNLDRLLMEETGIPVVVAEDPLTCVARGGGKALEMIDMH 339
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 68.8 bits (168), Expect = 2e-15 Identities = 40/176 (22%), Positives = 66/176 (37%), Gaps = 20/176 (11%) Query: 98 SNAYIKQLISTNARNDSLNLALSNKLKRSLDNVADQDVQVKVLKGVV--MISLSDKMLYR 155 +N I T N L+L +S + + + V +L +L+ Sbjct: 166 NNIGDAHTIGTRPDNGMLSLGVSYRFGQG-EAAPVVAPAPAPAPEVQTKHFTLKSDVLFN 224 Query: 156 SGDYNILPAAQEVLGKVAKVINDYD--KYSVLIEGNTDNVPLNSASLPKDNWDLSALRAT 213 + P Q L ++ +++ D SV++ G TD + N LS RA Sbjct: 225 FNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRI-----GSDAYNQGLSERRAQ 279 Query: 214 SVAKVLQNQFGVDPSRITAGGRSEYNPKATNMS---------VSGRAENRRTEIII 260 SV L ++ G+ +I+A G E NP N + A +RR EI + Sbjct: 280 SVVDYLISK-GIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEV 334
>MYCMG045#Hypothetical mycoplasma lipoprotein (MG045) signature. Length = 483 Score = 29.3 bits (65), Expect = 0.019 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 5/61 (8%) Query: 30 FDSFTEETNGILAYIPKNDLNEDAIKSLYIFEQEGVEIDYTYTEMPNINWNEEWEKNFSP 89 FD +TE +L +LNE+ K + E ++ YT + +I WN+ EK SP Sbjct: 411 FDYYTETLKALLEKEDSAELNENEKKLV-----ETIKKAYTIEKDSSIRWNQLVEKPISP 465 Query: 90 I 90 + Sbjct: 466 L 466
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 29.9 bits (67), Expect = 0.003 Identities = 13/101 (12%), Positives = 30/101 (29%), Gaps = 14/101 (13%) Query: 48 DGVGYVWVQGDEVLGYAVLMLNNEPAYDNIEGEWLSNGDYLVVHRVVVHDRCLGKGIAKQ 107 +++ + +G + N W Y ++ + V KG+ Sbjct: 64 GKAAFLYYLENNCIGRIKIRSN-----------W---NGYALIEDIAVAKDYRKKGVGTA 109 Query: 108 MFLWIEGWAKQQNIYSVKVDTNYDNQPMLHILQHLGYQYCG 148 + WAK+ + + ++T N H + Sbjct: 110 LLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFIIGA 150
>BINARYTOXINB#Binary toxin B family signature. Length = 764 Score = 28.5 bits (63), Expect = 0.027 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%) Query: 163 ESGKTILIETDAVYGTNDAFYEAKGSYSFMHTCNTWAN 200 E K + ++TD VYG N A Y + + T + W+ Sbjct: 472 EKTKQLRLDTDQVYG-NIATYNFENGRVRVDTGSNWSE 508
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.4 bits (66), Expect = 0.015 Identities = 9/57 (15%), Positives = 22/57 (38%), Gaps = 11/57 (19%) Query: 189 DIKSAAAGTILFAGEKSGYGKCVIISHGNGLATLYGHLSQVLVKANDKIKAGETIAK 245 +I + A G + +G I + +++VK + ++ G+ + K Sbjct: 81 EIVATANGKLTHSGRS------KEIKPIEN-----SIVKEIIVKEGESVRKGDVLLK 126