>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 189 bits (482), Expect = 1e-60 Identities = 83/326 (25%), Positives = 140/326 (42%), Gaps = 45/326 (13%) Query: 7 RSIALCFTLLISSFVPIQPAVANEHNFKDVSQKLETISQRLVGRIGVAAQEIGSGERITV 66 R I LC L+++ P + ++++ +L GR+G+ ++ SG +T Sbjct: 2 RYIRLCIISLLATL----PLAVHASP--QPLEQIKLSESQLSGRVGMIEMDLASGRTLTA 55 Query: 67 -NGDEMFVMASTYKVAIAVALLERIDKGELKLSDLIDVPQETMVTGDGAIAVNFVHPGIK 125 DE F M ST+KV + A+L R+D G+ +L I Q+ +V V+ H Sbjct: 56 WRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSP---VSEKHLADG 112 Query: 126 LSIANLIEPMITLSDNTATDICLKLAGGPEAVTKVMRNIGITDLRVDRYTSEILRDFYGL 185 +++ L IT+SDN+A ++ L GGP +T +R IG R+DR+ +E+ G Sbjct: 113 MTVGELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPG- 171 Query: 186 PDKAYSSVLAKALAQDPSLASKQPLRNLKFEQEDLRDQSSPNAMLELLLAIDSGKVLSEK 245 D RD ++P +M L + + + LS + Sbjct: 172 ---------------------------------DARDTTTPASMAATLRKLLTSQRLSAR 198 Query: 246 SSEFLLDVMSRTRTGAGRLKGLLPKGTLVAHKTGTIG-GVANDVGFVTLPDGRRFAIVVY 304 S LL M R ++ +LP G +A KTG G V + + +V+Y Sbjct: 199 SQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTGAGERGARGIVALLGPNNKAERIVVIY 258 Query: 305 SKSSTTSEADRDLAIAEITRTLYDFY 330 + + S A+R+ IA I L + + Sbjct: 259 LRDTPASMAERNQQIAGIGAALIEHW 284
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 45.1 bits (107), Expect = 5e-07 Identities = 32/102 (31%), Positives = 45/102 (44%), Gaps = 20/102 (19%) Query: 52 SLMPNEKGPFDIVIENGRVVDPETGLDAIRNVGIKGKRIAAISK----NTLKG------- 100 S + E G D VI N ++D + A ++G+K RIAAI K + G Sbjct: 59 SQVTREGGAVDTVITNALILDHWGIVKA--DIGLKDGRIAAIGKAGNPDMQPGVTIIVGP 116 Query: 101 -AKVINAEGLVVAPGFVDLHAH---GQQLPAARAQAFDGVTT 138 +VI EG +V G +D H H QQ+ A G+T Sbjct: 117 GTEVIAGEGKIVTAGGMDSHIHFICPQQIEEALM---SGLTC 155
>PF08280#M protein trans-acting positive regulator Length = 530 Score = 28.7 bits (64), Expect = 0.050 Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 2/46 (4%) Query: 119 GEVALNYMMRDHGGFEGNAQTFRIVTQLEPYTEHFGMNLSRRTLLG 164 L R H F N+ +R+ L P +F + LS+ ++G Sbjct: 134 HSRPLTDFARSH--FLSNSSAYRMREALIPLLRNFELKLSKNKIVG 177
>PF05272#Virulence-associated E family protein Length = 892 Score = 34.7 bits (79), Expect = 7e-04 Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 9/56 (16%) Query: 34 LILVGPSGCGKSTLMNTIAGLENISSGEIVIDGVDVAQVEPKDRDIAMVFQSYALY 89 ++L G G GKSTL+NT+ GL+ S I +D Y Sbjct: 599 VVLEGTGGIGKSTLINTLVGLDFFSDTHFDI---------GTGKDSYEQIAGIVAY 645
>PF06580#Sensor histidine kinase Length = 349 Score = 35.6 bits (82), Expect = 4e-04 Identities = 39/194 (20%), Positives = 73/194 (37%), Gaps = 42/194 (21%) Query: 295 IRAELLEDDTKRSKFNRDLDDLEMMVKGALQCVRDTDLHENNDYIDLNAMIEHVIDTY-- 352 IRA +LED TK + L +L +R + + N + L + +D+Y Sbjct: 182 IRALILEDPTKAREMLTSLSEL----------MRYSLRYSNARQVSLADELTV-VDSYLQ 230 Query: 353 ---NQHDTKVHFRPIIMEPMVAKPLAIKRVLTNLIDNAVKYG-----EQAVVTL--EHSE 402 Q + ++ F + P + ++ L++N +K+G + + L Sbjct: 231 LASIQFEDRLQFE-NQINPAIMDVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDN 289 Query: 403 EWIYVTIDDQGPGIAEAQLEAVFEPYFRLAKDSEGHGLGLGICRN---ILHGHGGDLIIS 459 + + +++ G + E G GL R +L+G + +S Sbjct: 290 GTVTLEVENTGSLALK--------------NTKESTGTGLQNVRERLQMLYGTEAQIKLS 335 Query: 460 NLPQGGLRAQVLIP 473 QG + A VLIP Sbjct: 336 E-KQGKVNAMVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 92.2 bits (229), Expect = 1e-23 Identities = 41/129 (31%), Positives = 67/129 (51%), Gaps = 2/129 (1%) Query: 5 TRILVVDDDSEIRELLDEYLSRNGYQVATVADGHQLKHYLAENGYPELVLLDIMLPGEDG 64 ILV DDD+ IR +L++ LSR GY V ++ L ++A G +LV+ D+++P E+ Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAA-GDGDLVVTDVVMPDENA 62 Query: 65 FSLCQFMR-RESTVPIIMLTAVSEETDQIIGLEIGADDYIAKPFNPRHLVARIKAVLRRV 123 F L ++ +P+++++A + I E GA DY+ KPF+ L+ I L Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122 Query: 124 HVTQEKPSD 132 K D Sbjct: 123 KRRPSKLED 131
>PF07675#Cleaved Adhesin Length = 1358 Score = 28.5 bits (63), Expect = 0.022 Identities = 17/55 (30%), Positives = 19/55 (34%), Gaps = 7/55 (12%) Query: 25 RKELTEQFNSRFGLEQTQ--KAISAYCKRYGWLTGRTGCFEKGELPWNTGTKGVC 77 R + TE F S E I A GWL C G+L W T G Sbjct: 808 RADFTETFESSTHGEAPAEWTTIDADGDGQGWL-----CLSSGQLDWLTAHGGTN 857
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.0 bits (67), Expect = 0.033 Identities = 10/35 (28%), Positives = 18/35 (51%) Query: 116 DELFIGIDVFAGRSAMRTNANAVREAHRHLAQGGV 150 + ++GID+ G+ + N + RH AQ G+ Sbjct: 1371 NHWYLGIDLGYGKFQSKLQTNHNAKFARHTAQFGL 1405
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.3 bits (65), Expect = 0.014 Identities = 10/18 (55%), Positives = 11/18 (61%) Query: 30 LMGPSGAGKSTLLALLAG 47 L G G GKSTL+ L G Sbjct: 601 LEGTGGIGKSTLINTLVG 618
>MALTOSEBP#Maltose binding protein signature. Length = 396 Score = 28.9 bits (64), Expect = 0.033 Identities = 43/170 (25%), Positives = 70/170 (41%), Gaps = 14/170 (8%) Query: 8 VKHTLNLIALASITSMMGISSSALAADKTLTIYTYDSFASDWGPGPTVEKAFEAQCGCDV 67 +K ++AL+++T+MM S+SALA + + + + + V K FE G V Sbjct: 3 IKTGARILALSALTTMM-FSASALAKIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKV 61 Query: 68 NFVALDDGVSILNRLRLEGSNTKADIVLGLDNNLMAEAKATGLLA---PHQVNTQALSLP 124 D ++ G DI+ + A+ +GLLA P + L P Sbjct: 62 TVEHPDKLEEKFPQVAATGDG--PDIIFWAHDRFGGYAQ-SGLLAEITPDKAFQDKL-YP 117 Query: 125 NGWA----DDTFIPYDYGY--FAFVYNKGKLANPPKSLKELVESRDDLKV 168 W + I Y + +YNK L NPPK+ +E+ +LK Sbjct: 118 FTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKA 167
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 50.9 bits (122), Expect = 7e-09 Identities = 50/303 (16%), Positives = 104/303 (34%), Gaps = 48/303 (15%) Query: 283 VMVTGAGGSIGSELCRQIVRQKPKTLILFELSEYGLYEIDKELSGMVEAMQLEVEIIPLL 342 +VTGA G IG + ++++ + + + L++Y Y D L + + Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDY--Y--DVSLKQARLELLAQPGFQFHK 58 Query: 343 GSVQRINRLSATMRAFGVQTVYHAAAYKHVPLVEYNVVEGVRNNVFGTYYSAKAAIEAGV 402 + ++ + + V+ + V N +N+ G + + Sbjct: 59 IDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKI 118 Query: 403 ESFVLIST---------------DKAVRPTNVMGTSKRMAELALQALAAKENDKVNGTRF 447 + + S+ D P ++ +K+ EL + + G Sbjct: 119 QHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYS-----HLYGLPA 173 Query: 448 CMVRFGNVLGSSGS---VIPLFKRQIEEGQAITV-THPDIIRYFMTIPEAAQLVIQA--- 500 +RF V G G + F + + EG++I V + + R F I + A+ +I+ Sbjct: 174 TGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDV 233 Query: 501 ---------------GAMGKGGDVFVLDMGEPVKIVDLAKNLIQLSGLEVKSS--DNPNG 543 A V+ + PV+++D + L G+E K + G Sbjct: 234 IPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLPLQPG 293 Query: 544 DIE 546 D+ Sbjct: 294 DVL 296
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 61.7 bits (150), Expect = 5e-13 Identities = 60/294 (20%), Positives = 102/294 (34%), Gaps = 66/294 (22%) Query: 2 ILVTGASGFVGSTLFA--LGRGD---------------LKAVFRATDEVTFSDGYLVDSI 44 LVTGA+GF+G + L G LK +A E+ G+ I Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLK---QARLELLAQPGFQFHKI 59 Query: 45 D-------GKTVWDGAFDNVNTIIHLAGLAHSHSFSSKD---YNRVNVAGTLRLATKAAE 94 D G F+ V + +S ++ Y N+ G L + Sbjct: 60 DLADREGMTDLFASGHFERV---FISPHRL-AVRYSLENPHAYADSNLTGFLNILEGCRH 115 Query: 95 AGVRRFVFVSSIGVNGTSTQAEPFALDSEPS-PHNDYAQSKYDAEIGLKKIAKETGLEVV 153 ++ ++ SS V G + + PF+ D P + YA +K E+ + GL Sbjct: 116 NKIQHLLYASSSSVYGLNRKM-PFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPAT 174 Query: 154 IVRPTLVYG----PD-APGNFGMLTKLI---KRLPVLPFGLATNRRDFISVQNLADLLVT 205 +R VYG PD A F TK + K + V + +RDF + ++A+ ++ Sbjct: 175 GLRFFTVYGPWGRPDMALFKF---TKAMLEGKSIDV--YNYGKMKRDFTYIDDIAEAIIR 229 Query: 206 CATHP-----------------NAAGHTFLASDGETVSIKEFTNAIAKGLGKKV 242 A + + V + ++ A+ LG + Sbjct: 230 LQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEA 283
>SECA#SecA protein signature. Length = 901 Score = 32.5 bits (74), Expect = 0.007 Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 6/83 (7%) Query: 291 MRLVQGDV-----GSGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHAINFANWFEKMG 345 M L + + G GKTL A L A G V ++ + LA++ A N FE +G Sbjct: 92 MVLNERCIAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEFLG 151 Query: 346 IPVGW-LAGKLKGKAKEAELARI 367 + VG L G +EA A I Sbjct: 152 LTVGINLPGMPAPAKREAYAADI 174
>PF06580#Sensor histidine kinase Length = 349 Score = 34.1 bits (78), Expect = 0.001 Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 28/105 (26%) Query: 333 LVVNALRYG------NGWVKISTGMTADSKLVWVCVEDNGPGIEKSQVAKLFEPFTRGDT 386 LV N +++G G + + T D+ V + VE+ G K+ Sbjct: 263 LVENGIKHGIAQLPQGGKILLKG--TKDNGTVTLEVENTGSLALKNT------------- 307 Query: 387 ARGSEGTGLGLAIVKRIVSQHHG---SVVVNNRSEGGLKVQLSFP 428 E TG GL V+ + +G + ++ + +G + + P Sbjct: 308 ---KESTGTGLQNVRERLQMLYGTEAQIKLSEK-QGKVNAMVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 100 bits (251), Expect = 1e-26 Identities = 45/136 (33%), Positives = 73/136 (53%), Gaps = 3/136 (2%) Query: 6 KILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65 ILV DDDA +R +L + LS G+ VR +N + R + + L+V D+++P E+ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 66 ICRRLRNANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVL---RR 122 + R++ A LP+L+++A+ + I E GA DYLPKPF+ EL+ I L +R Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 123 QTIELPGAPSAEEKIV 138 + +L +V Sbjct: 125 RPSKLEDDSQDGMPLV 140
>cloacin#Cloacin signature. Length = 551 Score = 26.6 bits (58), Expect = 0.048 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Query: 31 REPVAPTVALAKSNAERKVKSDDKRRRQSSWDPSEHPGYEMETN 74 V +V+ S + K + D++ RRQ WD + HP E N Sbjct: 280 HNAVYVSVSDVLSPDQVKQRQDEENRRQQEWDAT-HPVEAAERN 322
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 33.7 bits (77), Expect = 2e-04 Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%) Query: 9 KRNTRQRGFTLIEVLVSIAIFATL-SVAAYQVVNQVQRS 46 + +QRGFTL+E++V I I L S+ ++ +++ Sbjct: 2 RATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKA 40
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 65.3 bits (159), Expect = 1e-13 Identities = 40/170 (23%), Positives = 66/170 (38%), Gaps = 1/170 (0%) Query: 4 LTLLVLFSPLAIDIYLPALPLISNTFSVEHALAQDTITWFLFAMGVGQLFAGPLADKLGR 63 L +L FS L + +LP I+N F+ A T F+ +G G L+D+LG Sbjct: 19 LCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGI 78 Query: 64 RTVALGGITIYALSALLAWSAQN-IEWLLVSRLLQGLGACATSVAAFATVRDIFGPEKSG 122 + + L GI I +++ + + L+++R +QG GA A V E G Sbjct: 79 KRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRG 138 Query: 123 KMISYLNGAICFIPALAPILGSWLTQQFGWRANFSFMAGFAVVVGTLMLF 172 K + + + P +G + W + V LM Sbjct: 139 KAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKL 188
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 30.6 bits (69), Expect = 0.002 Identities = 9/88 (10%), Positives = 25/88 (28%), Gaps = 5/88 (5%) Query: 44 LQAAERAAKDLDLAQANASSQLKEAKRTATEIIEQANKRKAQILDEAREDAQTERQKILA 103 + E + SQL++ + E+ + + + + ++ Sbjct: 254 VLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEY----QLVTQLFKNEILDKLRQTTD 309 Query: 104 QAEAQLEAERNRARDELRKQVATLAVAG 131 L E + + + V V+ Sbjct: 310 NI-GLLTLELAKNEERQQASVIRAPVSV 336
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 51.4 bits (123), Expect = 3e-09 Identities = 37/165 (22%), Positives = 71/165 (43%), Gaps = 6/165 (3%) Query: 8 LVYLAALSMLGFVATDMYLPAFKAMEIDFMTGPEQIALSLTVFLVGMAVGQLLWGLASDK 67 L++L LS + + + + DF P T F++ ++G ++G SD+ Sbjct: 16 LIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQ 75 Query: 68 FGHRNTLAAGLALFTLASLGLAFSDQVWQLLSL-RFVQAIGVCA-PAVIWQAMVIKRYSS 125 G + L G+ + S+ + LL + RF+Q G A PA++ +V+ RY Sbjct: 76 LGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALV--MVVVARYIP 133 Query: 126 SSQQ--IFATIMPLVALSPALAPQLGVVLADSFGWHSIFVALTVL 168 + F I +VA+ + P +G ++A W + + + Sbjct: 134 KENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMIT 178
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 44.4 bits (105), Expect = 7e-07 Identities = 40/197 (20%), Positives = 69/197 (35%), Gaps = 52/197 (26%) Query: 170 QQALSLHQTKQALQPSSHSRDLQDIIGQ----QQGKRALEIAAAGNHNLLFLGPPGTGKT 225 +AL+ + + + + S+D ++G+ Q+ R L + L+ G GTGK Sbjct: 116 GRALAEPKRRPS-KLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKE 174 Query: 226 MLASRLRDLLPEMSEEEAMETAAVASLTQSDINEHNWKQRPFRAPH-----HSSSMAALV 280 ++A L D + PF A + + L Sbjct: 175 LVARALHDYGK-------------------------RRNGPFVAINMAAIPRDLIESELF 209 Query: 281 G-------GGTIPRPGEISLAHNGLLFLDEM----PEFERKVLDSMREPLESGEIIISRA 329 G G G A G LFLDE+ + + ++L L+ GE + Sbjct: 210 GHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLL----RVLQQGE--YTTV 263 Query: 330 QGKTRFPARFQLVGALN 346 G+T + ++V A N Sbjct: 264 GGRTPIRSDVRIVAATN 280
>MALTOSEBP#Maltose binding protein signature. Length = 396 Score = 28.5 bits (63), Expect = 0.041 Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 4/37 (10%) Query: 13 PDFMWYALESIGIRAESGLL----PLNSYENRVYQFT 45 PD +++A + G A+SGLL P ++++++Y FT Sbjct: 83 PDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFT 119
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 37.0 bits (85), Expect = 2e-04 Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 16/123 (13%) Query: 184 QLCQAVEHAHHNQVLHADLKPENILIDHAQ-RPKLLDFNLTQKVSDQAKQQGKTGLVAFS 242 +L H V+H D+KP N++ D A P ++D L + +Q K F+ Sbjct: 253 RLLDVTNHLAKAGVVHNDIKPGNVVFDRASGEPVVIDLGLHSRSGEQPK--------GFT 304 Query: 243 EHYASPEQKSGGY-LTQQSDIYSLGKILQLLF------PHMKKRSDLCFIAEKATQAIAE 295 E + +PE G +++SD++ + L P +K L FI + + E Sbjct: 305 ESFKAPELGVGNLGASEKSDVFLVVSTLLHCIEGFEKNPEIKPNQGLRFITSEPAHVMDE 364 Query: 296 QRY 298 Y Sbjct: 365 NGY 367
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 33.6 bits (77), Expect = 6e-04 Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 6/131 (4%) Query: 54 SDAASPATIAMCEESVNHAIDYSNENRDTL-NALIQIQQALEKQVAEIRAASQNPSEQDL 112 P + EE V E T N Q + L+K+ AE + + Sbjct: 169 KLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYE- 227 Query: 113 ASIEALNQKLSKSQQLIRKLKGDLDKSVRGLRKAKAKLLEQNDTVDGLRKQKEDIEKQFE 172 +L L+ K + K + + + K +E + + + Q E IE + Sbjct: 228 NLSRVEKSRLDDFSSLLH--KQAIAKH--AVLEQENKYVEAVNELRVYKSQLEQIESEIL 283 Query: 173 QLEREYIMISE 183 + EY ++++ Sbjct: 284 SAKEEYQLVTQ 294
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 77.2 bits (190), Expect = 6e-18 Identities = 32/138 (23%), Positives = 56/138 (40%), Gaps = 13/138 (9%) Query: 2 KILIVDDSKATLEIVRKALLGFGYRRLSIEKTNCAREALEKMAHWRPDIVLTDWHMPDMS 61 IL+ DD A ++ +AL GY + T+ A +A D+V+TD MPD + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYD---VRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 62 GLELVQTVASRFPEVKIAMITTVDDDEQIAQAKAAGASFVLSKPFDDDALHRKLLPLVQG 121 +L+ + P++ + +++ + +A GA L KPFD + Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLT----------EL 111 Query: 122 AEESEKAFDELVEIQKEL 139 +A E +L Sbjct: 112 IGIIGRALAEPKRRPSKL 129
>MALTOSEBP#Maltose binding protein signature. Length = 396 Score = 29.7 bits (66), Expect = 0.001 Identities = 15/48 (31%), Positives = 26/48 (54%) Query: 39 LEFDDRSQIIINRQEPMQEIWLASKSGGFHFQYKAGQWICSKTGVEFA 86 L+ +S ++ N QEP L + GG+ F+Y+ G++ GV+ A Sbjct: 165 LKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNA 212
>BACYPHPHTASE#Salmonella/Yersinia modular tyrosine phosphatase signature. Length = 468 Score = 26.7 bits (58), Expect = 0.048 Identities = 6/20 (30%), Positives = 9/20 (45%) Query: 114 LHCMGGSGRTGLFAAHLLLE 133 +HC G GRT + + Sbjct: 401 IHCRAGVGRTAQLIGAMCMN 420
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 28.7 bits (64), Expect = 0.043 Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 5/90 (5%) Query: 42 GYSALAIASLFLF-YEFFGVVTNLIGGWLGARLGLNKTMNIGLAMQIIALLMLAV----P 96 S I S+ +F ++ IGG L R G +NIG+ ++ L + Sbjct: 288 QLSTAEIGSVIIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETT 347 Query: 97 AAWLTIPWVMAAQALSGIAKDLNKMSAKSA 126 + ++TI V LS ++ + + S Sbjct: 348 SWFMTIIIVFVLGGLSFTKTVISTIVSSSL 377
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 28.6 bits (64), Expect = 0.018 Identities = 23/154 (14%), Positives = 54/154 (35%), Gaps = 4/154 (2%) Query: 15 TEVSAELNRGLKIAKQLQLVASNARALALRAGESAAGFRPVTDSIDELVLLTFHSSNTIN 74 T + AE + + LQ R L + + S Sbjct: 128 TALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQN---VSEEEV 184 Query: 75 LQAQQLSQIATERTRAQFVLKQLNRVEQSSKEAIFLSSLNQAKQRANEDYQQLNTLFTLK 134 L+ L + + Q K+LN ++ ++ L+ +N+ + + + +L+ +L Sbjct: 185 LRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLL 244 Query: 135 AKSLKEALQELYDQLRIAQIISTMLSVEASKVDE 168 K L + + + ++ L V S++++ Sbjct: 245 HKQAIAKHAVLEQENKYVEAVNE-LRVYKSQLEQ 277
>BINARYTOXINA#Clostridial binary toxin A signature. Length = 454 Score = 28.9 bits (64), Expect = 0.035 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 12/84 (14%) Query: 85 IDNYLSRADVNFSNGTILIETVSPTEPKQHLKNAIITTLLTPDDPANVDLFSS------- 137 I NY S+ F + I E+ + ++L+NAI + D P NV F S Sbjct: 90 ISNY-SQTRQYFYDYQI--ESNPREKEYKNLRNAISKNKI--DKPINVYYFESPEKFAFN 144 Query: 138 KEIRLEGQPFLYNQVLDQDKQAIQ 161 KEIR E Q + + ++ K+ IQ Sbjct: 145 KEIRTENQNEISLEKFNELKETIQ 168
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 37.6 bits (87), Expect = 3e-05 Identities = 25/137 (18%), Positives = 55/137 (40%), Gaps = 11/137 (8%) Query: 209 LEIKPNSMKGMMNLGYSYYMSGQYDKAERYTLAALEKDPNNQKGQNNLALIYLGKNEVKK 268 EI ++++ + +L ++ Y SG+Y+ A + A D + + L + Sbjct: 29 NEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDL 88 Query: 269 AINIFMRS----MGAPEALNNVGYFLILQGKPDKAIPYLQQAIDK---KPSYYKLANENL 321 AI+ + + P + L+ +G+ +A L A + K + +L+ Sbjct: 89 AIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELIADKTEFKELS---- 144 Query: 322 ERALAMVREEQEKAQGE 338 R +M+ + K + E Sbjct: 145 TRVSSMLEAIKLKKEME 161
>PF05043#Transcriptional activator Length = 493 Score = 28.8 bits (64), Expect = 0.031 Identities = 12/53 (22%), Positives = 24/53 (45%) Query: 11 LNLLVVFSYLYRYRSVSVAAEKSFVSQSAMSHSLNRLRGLFDDVLFVRKGHKM 63 L LL + R+ S AE ++ A+ L+ ++ F D++F + + Sbjct: 13 LELLELLFEHKRWFHRSELAELLNCTERAVKDDLSHVKSAFPDLIFHSSTNGI 65
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 191 bits (486), Expect = 2e-60 Identities = 80/346 (23%), Positives = 143/346 (41%), Gaps = 37/346 (10%) Query: 1 MNVLVTGGMGYIGSHTCVQMMAAGMEPIIVDNLCNAKVDVL---SRIEALTGKQPTFYQG 57 M LVTG G+IG H +++ AG + + +DNL N DV +R+E L F++ Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNL-NDYYDVSLKQARLELLAQPGFQFHKI 59 Query: 58 DIRDEAFLDSVFAQHDIQAVIHFAGLKAVGESVAKPLEYYDNNVNGSLVLARCMRKAGVK 117 D+ D + +FA + V AV S+ P Y D+N+ G L + R ++ Sbjct: 60 DLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQ 119 Query: 118 SIVFSSSATVYGDPEIVPITEDSPTGATTNPYGRSKYMVEQCLSDLFHAENDWSITLLRY 177 ++++SS++VYG +P + D + Y +K E ++ + T LR+ Sbjct: 120 HLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANE-LMAHTYSHLYGLPATGLRF 178 Query: 178 FNPVGAHPSGSMGEDPQGIPNNLMPFIAQVAVGRREKLSVFGNDYPTPDGTGVRDYIHVM 237 F G P G P ++ F A+ + + V+ G RD+ ++ Sbjct: 179 FTVYG----------PWGRP-DMALFKFTKAMLEGKSIDVYN------YGKMKRDFTYID 221 Query: 238 DLADGHIAALKSVGKTSG---------------LHIYNLGTGKGSSVLEMVEAFAAACGK 282 D+A+ I + +YN+G +++ ++A A G Sbjct: 222 DIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGI 281 Query: 283 PVPYELCPRRPGDIAECWASTEKAERELGWKATRSVAEMTADTWNW 328 + P +PGD+ E A T+ +G+ +V + + NW Sbjct: 282 EAKKNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNW 327
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 51.1 bits (122), Expect = 6e-10 Identities = 17/89 (19%), Positives = 37/89 (41%), Gaps = 1/89 (1%) Query: 35 FIQSEHAVLLVADSGQQLAGYALLLFHQGTQLSRLYSIAVRPEFRGQKIAQSLIELCEQS 94 +++ E + G + + + + IAV ++R + + +L+ + Sbjct: 59 YVEEEGKAAFLYYLENNCIGR-IKIRSNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEW 117 Query: 95 AIEQGFTTLRLEVREDNSAAINLYKKLGY 123 A E F L LE ++ N +A + Y K + Sbjct: 118 AKENHFCGLMLETQDINISACHFYAKHHF 146
>ARGREPRESSOR#Bacterial arginine repressor signature. Length = 149 Score = 38.7 bits (90), Expect = 6e-06 Identities = 23/107 (21%), Positives = 41/107 (38%), Gaps = 11/107 (10%) Query: 1 MKQIPRHQQIIEMVKKQGYVSTDELVEK-----FNVSPQTIRRDLNELADANKIRRYHGG 55 M + RH +I E++ + DELV+ +NV+ T+ RD+ EL K+ +G Sbjct: 1 MNKGQRHIKIREIITANEIETQDELVDILKKDGYNVTQATVSRDIKELH-LVKVPTNNGS 59 Query: 56 ATIPLSSENTSYSTRKKEHFTEKDLIAEE-----LVQHIPDGATLFI 97 L ++ K + + + +V G I Sbjct: 60 YKYSLPADQRFNPLSKLKRSLMDAFVKIDSASHLIVLKTMPGNAQAI 106
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 34.4 bits (79), Expect = 7e-04 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 11/71 (15%) Query: 24 GKTMVILLGGEAI----ADKNFSNIIN-------DIALMHSLGVKVVLVYGARPQINQLL 72 GK +VI LGG A+ ++ +++ IA + + G +VV+ +G PQ+ LL Sbjct: 2 GKRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLL 61 Query: 73 DKQSSQTPYHK 83 + + Sbjct: 62 LHMDAGQATYG 72
>CHANNELTSX#Nucleoside-specific channel-forming protein Tsx signature. Length = 294 Score = 73.9 bits (181), Expect = 2e-17 Identities = 85/306 (27%), Positives = 135/306 (44%), Gaps = 40/306 (13%) Query: 1 MRKSLLTLG-LLAATSAPVMAADYSDGDIHKNDYKWMQFNLMAAIDEL--PGESSHDYLE 57 M+K+LL G ++A ++ A +D + +D+ N++ + P + YLE Sbjct: 1 MKKTLLAAGAVVALSTTFAAGAAENDKPQYLSDWWHQSVNVVGSYHTRFGPQIRNDTYLE 60 Query: 58 MEFGGRSGIFDLYGYVDVFNLTSDKGSDK---SGKDKIFMKFAPRMSLDAVTGKDLSFGP 114 E + FD YGY+D + K + +FM+ PR S+D +T DLSFGP Sbjct: 61 YEAFAKKDWFDFYGYIDAPVFFGGNSTAKGIWNKGSPLFMEIEPRFSIDKLTNTDLSFGP 120 Query: 115 VQELYVATLMEWGGGGATNCTPDQSTCVPSETVNTQKIGLGSDVMVPWLGKIGLNLYGTY 174 +E Y A + G N + +QST +GLG+D+ + LN+Y Y Sbjct: 121 FKEWYFANNYIYDMG--RNDSQEQSTWY---------MGLGTDIDTGLPMSLSLNVYAKY 169 Query: 175 D------SNMKDWNGFQISTNWFKPFYFFENGSFISYQGYIDYQFG--MKDDN------K 220 SN +W+G++ +F P GS +SY G+ ++ +G + DDN K Sbjct: 170 QWQNYGASNENEWDGYRFKVKYFVPLTDLWGGS-LSYIGFTNFDWGSDLGDDNFYDLNGK 228 Query: 221 ALNTSNGGA-----MFNGIYWHSDRFAVGYGLKG-YKDVYGLK--DDGLAGKTSGFGHYV 272 TSN A N +WH A + G + D L D + +++G+G Y Sbjct: 229 HARTSNSIASSHILALNYAHWHYSIVARYFHNGGQWADDAKLNFGDGPFSVRSTGWGGYF 288 Query: 273 AVTYKF 278 V Y F Sbjct: 289 VVGYNF 294
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 33.9 bits (77), Expect = 0.009 Identities = 32/154 (20%), Positives = 53/154 (34%), Gaps = 18/154 (11%) Query: 118 RVPSLAQVRSASTEQAVTVMKAHQDKLNATSRPIA---PTPVTRPVKVTPATPAQAVSET 174 V Q + ++A + + + IA PV P TP+ + V+E Sbjct: 984 EVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAEN 1043 Query: 175 VKVESPVDTTPVKAPDVPQVKTLEKQLEMSESELTALEEKNHNLRLMLAEVQSEVDGLKT 234 K ES K + + E + E A N + +EV + Sbjct: 1044 SKQES-------KTVEKNEQDATETTAQNREVAKEAKSNVKANTQ------TNEVAQSGS 1090 Query: 235 ELGD-ENRIRSEVEKLLAEEKAKLE-EQQRMQPS 266 E + + E + EEKAK+E E+ + P Sbjct: 1091 ETKETQTTETKETATVEKEEKAKVETEKTQEVPK 1124
>CLENTEROTOXN#Clostridium enterotoxin signature. Length = 319 Score = 35.4 bits (81), Expect = 2e-04 Identities = 10/64 (15%), Positives = 22/64 (34%) Query: 1 MENSSQADITSETTSINARLAYIDFKLFFTGRVSRADLKDAFGIAEAAASRVLTEYSKRR 60 + + + T ++F + FT +A ++ FGI + + S Sbjct: 63 LNPNETGTFSQSLTKSKEVSINVNFSVGFTSEFIQASVEYGFGITIGEQNTIERSVSTTA 122 Query: 61 PNNK 64 N+ Sbjct: 123 GPNE 126
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 61.4 bits (149), Expect = 7e-12 Identities = 22/145 (15%), Positives = 49/145 (33%), Gaps = 6/145 (4%) Query: 596 QGLRALIVEDNRTNAIIIETFLRNKGFSCERVENGEQAIACVTQHPFDLILMDNHMPVMD 655 G L+ +D+ ++ L G+ N + DL++ D MP + Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 656 GIEAITAIRAMDSPCRHTLIFGCTADVFKETRERMLGVGADHIIAKPIVEAELDDALFQH 715 + + I+ + +A T + GA + KP +L + + Sbjct: 62 AFDLLPRIKKARP---DLPVLVMSAQNTFMTAIKASEKGAYDYLPKPF---DLTELIGII 115 Query: 716 AKLLYQFRAEDVQAQVEEQSIESLL 740 + L + + + + + Q L+ Sbjct: 116 GRALAEPKRRPSKLEDDSQDGMPLV 140
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 50.1 bits (119), Expect = 4e-08 Identities = 57/314 (18%), Positives = 108/314 (34%), Gaps = 23/314 (7%) Query: 226 DANRIEQWCDDYNGLTAFLNK-KEAFIDAIANNKQIAYLTNQLASALITIRDVSESLDGS 284 + +E+ + + N K D NNK + ++L L ++ D S Sbjct: 48 QTDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKS 107 Query: 285 LKTTELKRSDFLENSDKQIGEINQDKLDKEVQKSALQRSITSINSEIEVHHSKLITYENS 344 L K + LE + + + ++ SA +++ + + + + L Sbjct: 108 LSEKASKIQE-LEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADL-EKALE 165 Query: 345 GYPELSVKL-KQLPEMEDRVAQQRQSYANLETKVNDAKAKYEKDKQSLVSKFNKEKSDLT 403 G S ++ +E A A LE + A D + EK+ L Sbjct: 166 GAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKI-KTLEAEKAALA 224 Query: 404 EQKLDAEKECKVKKDKIDDVYQPQLKELTQTHTSFIADKSQALMEHKAELATQKQRLKNP 463 +K D EK + + ++K L AL +AEL + N Sbjct: 225 ARKADLEKALEGAMNFSTA-DSAKIKTLEAEK--------AALEARQAELEKALEGAMN- 274 Query: 464 DIDELLIEQRELLESEKDRLQEQVDTLKHKTTVSEKEGVNLQTKREKLLERLEATRRNMR 523 + + LE+EK L+ + L+H++ V R+ L L+A+R + Sbjct: 275 -FSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNAN-------RQSLRRDLDASREAKK 326 Query: 524 DAEARLKVVSNRLD 537 EA + + + Sbjct: 327 QLEAEHQKLEEQNK 340
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 27.6 bits (61), Expect = 0.024 Identities = 25/114 (21%), Positives = 50/114 (43%), Gaps = 7/114 (6%) Query: 50 ENADYYFEGKTDFSTYVQRLHDEAMGVNLREGYVPCSHFWLVDAQKTVLGAIRVRHNINN 109 EN + + + Y ++ D+ M V+ E + + ++ +G I++R N N Sbjct: 31 ENGVWTYTEERFSKPYFKQYEDDDMDVSYVEEEGKAAFLYYLE--NNCIGRIKIRSNWN- 87 Query: 110 EFLAIEAGHIGYDIAPSHRGKGNGKVMLKLALPKAAELGIERALITADEDNLAS 163 + IE I +A +R KG G +L A+ A E ++ + N+++ Sbjct: 88 GYALIE--DI--AVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISA 137
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 29.8 bits (67), Expect = 0.003 Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 7/100 (7%) Query: 47 LPDAMWLDATLYALLALL--IGMLLWQRRLLGAGDVKL-AVICVWMVFPNWGELILLSAL 103 L DA+ Y +L L LL + +G GD KL A + W+ + ++LLS+L Sbjct: 181 LGDAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL 240 Query: 104 GAGVLAIWQLARQRLAMSNTHQGTIPLGVSISASTVYLLF 143 + I + + S IP G ++ + L Sbjct: 241 VGAFMGIGLILLRNHHQSK----PIPFGPYLAIAGWIALL 276
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 130 bits (328), Expect = 1e-34 Identities = 59/261 (22%), Positives = 113/261 (43%), Gaps = 29/261 (11%) Query: 182 VINQLKITAAPQVNISIRMVEMAKSTSEELGIRWQSVNPNWM----LGVSPGNQFATGID 237 VI QL I PQV + + E+ + LGI+W + N G+ A Sbjct: 336 VIAQLDI-RRPQVLVEAIIAEVQDADGLNLGIQWANKNAGMTQFTNSGLPISTAIAGANQ 394 Query: 238 LTDPDNL-----------------IKESAFMGIIDALASKSLVNVLAEPNLTAKSGEKAE 280 + + + ++ AL+S + ++LA P++ +A Sbjct: 395 YNKDGTVSSSLASALSSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMEAT 454 Query: 281 FLVGGEFPFPS----IDGESV--GVEFKSFGVGLSVTPTVLSENRISLTVTPVVSALSRQ 334 F VG E P + G+++ VE K+ G+ L V P + + + L + VS+++ Sbjct: 455 FNVGQEVPVLTGSQTTSGDNIFNTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADA 514 Query: 335 NSIKINGVDVPGLDKRTATTTIELADGQSFALAGLLRTSEENSVDAIPFLGELPGVGALF 394 S + + + RT + + G++ + GLL S ++ D +P LG++P +GALF Sbjct: 515 ASSTSSDLGAT-FNTRTVNNAVLVGSGETVVVGGLLDKSVSDTADKVPLLGDIPVIGALF 573 Query: 395 RTNKNQQIERELVIIATASLV 415 R+ + +R L++ +++ Sbjct: 574 RSTSKKVSKRNLMLFIRPTVI 594
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 29.0 bits (65), Expect = 0.031 Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 5/79 (6%) Query: 29 HARSMSAAISHLAERHCGDILLLQVERED---LEQLPALAKVTPPGCQVILFGDEISLSE 85 + + +A GD+++ V D + LP + K P V++ + + Sbjct: 32 ITSNAATLWRWIAAGD-GDLVVTDVVMPDENAFDLLPRIKKARP-DLPVLVMSAQNTFMT 89 Query: 86 YRHLMQMGIADYLALPLDP 104 + G DYL P D Sbjct: 90 AIKASEKGAYDYLPKPFDL 108
>MYCMG045#Hypothetical mycoplasma lipoprotein (MG045) signature. Length = 483 Score = 40.1 bits (93), Expect = 9e-06 Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 4/93 (4%) Query: 11 SACALSLFSGSVAAEDKELVFMNWGPYINSNILEQFTKETGIKVIYSTYESNETLYAKLK 70 + +SL S + V N+ YI+ +LE+ + + + TY SNE L Sbjct: 10 FSLFVSLSSILSSCGSTTFVLANFESYISPLLLER--VQEKHPLTFLTYPSNEKLINGFA 67 Query: 71 THNQGYDLVVPSTYFVSKMRDEGMLQKIDKSKL 103 N Y + V STY VS++ + +L ID S+ Sbjct: 68 --NNTYSVAVASTYAVSELIERDLLSPIDWSQF 98
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 28.2 bits (62), Expect = 0.015 Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 24/97 (24%) Query: 42 EDYYKKGKGINIDI-SKLNV--AKELGLNATVSSD-------------------NNVIVI 79 E YY+ GKGI++DI SK + L L ++S D N I I Sbjct: 168 EVYYEIGKGISLDIISKDKSLDPEFLNLIKSLSDDSDSSDLLFSQKFKEKLELNNKSIDI 227 Query: 80 EFSKGDLPHFP-ALTATFTHRTLPD-RDFTQLLTADA 114 F K +L F A + F++ PD R +L D Sbjct: 228 NFIKENLTEFQHAFSLAFSYYFAPDHRTVLELYAPDM 264
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 67.9 bits (166), Expect = 4e-14 Identities = 24/113 (21%), Positives = 50/113 (44%), Gaps = 2/113 (1%) Query: 458 VLVVEDTHSNQMVIQLLLNKLGHNVFIANNGSEAIEFIESNTESLDVVFMDVSMPVMDGL 517 +LV +D + + V+ L++ G++V I +N + +I + D+V DV MP + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAA--GDGDLVVTDVVMPDENAF 63 Query: 518 TATKILRAKGFEVPIIALTAHALASDKQNCLDVGMDSFVAKPVRKQELANAIE 570 ++ ++P++ ++A + G ++ KP EL I Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 32.9 bits (75), Expect = 0.003 Identities = 36/200 (18%), Positives = 65/200 (32%), Gaps = 16/200 (8%) Query: 212 SSSDISNSQQEHLNSLAS-ATEQMASTIREVANLAHDSSTQTEDARSVAQSGQVKVANTL 270 + +D +Q L + Q+ S E+ L ++V S + + T Sbjct: 132 AEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNV--SEEEVLRLTS 189 Query: 271 NSISQLSSEIQSASQAVEELDANAAQIDEVVTTINGISEQTNL----------LALNAAI 320 Q S+ Q LD A+ V+ IN + + L AI Sbjct: 190 LIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAI 249 Query: 321 EAARAGEQGRGFAVVADEVRALAGRTQQATVEIQAMIEALQRNSQSLTKLMEVTVNNANQ 380 EQ + +E+R + +Q EI + E Q +Q ++ Q Sbjct: 250 AKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNE---ILDKLRQ 306 Query: 381 GQTLMSEVNHEIASLADKNQ 400 + + E+A ++ Q Sbjct: 307 TTDNIGLLTLELAKNEERQQ 326
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 80.0 bits (197), Expect = 1e-16 Identities = 51/162 (31%), Positives = 68/162 (41%), Gaps = 13/162 (8%) Query: 2771 FNASTGDDQIRGTDNNDIILGHAGNDVLDGGLGDDLLFGGAGSDLLIGGLGNDILTGGDG 2830 F+ + GDD I G D ND + G GND L GG GDD L+GG G+D LIG GN+ L GGDG Sbjct: 740 FHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLIGVAGNNYLNGGDG 799 Query: 2831 ADIFKWVDMETARDRVTDFNASQGDKLDLADLFDDMSKADIDTLLADLGSGDNQGAVGDV 2890 D F+ A++ + G +D L D G GD+ G Sbjct: 800 DDEFQVQGNSLAKNVL-----FGGKG-------NDKLYGSEGADLLDGGEGDDLLKGGYG 847 Query: 2891 S-IRVSDDASASHLTIVKGGQTLTIDFDGASAADITSSLMDN 2931 + I H+ GG+ + D+ N Sbjct: 848 NDIYRYLSGYGHHIIDDDGGKEDKLSLADIDFRDVAFKREGN 889 Score = 35.3 bits (81), Expect = 0.005 Identities = 15/37 (40%), Positives = 23/37 (62%) Query: 2192 GTNGSEVLFGSAQADTMYGKYGNDVFVGGAGDDKIDG 2228 G +G +++ G+ D +YG GND GG GDD++ G Sbjct: 742 GADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYG 778 Score = 34.9 bits (80), Expect = 0.006 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 3/45 (6%) Query: 2197 EVLFGSAQADTMYGKYGNDVFVGGAGDDKI---DGDDSLSTTDHD 2238 E L G+ +AD +G D+F G GDD I DG+D L + Sbjct: 720 EELIGTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGN 764 Score = 34.6 bits (79), Expect = 0.007 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 3/63 (4%) Query: 2192 GTNGSEVLFGSAQADTMYGKYGNDVFVGGAGDDKI---DGDDSLSTTDHDGVDTVIYSGP 2248 G +G++ L+G DT+ G G+D GG G+DK+ G++ L+ D D V + Sbjct: 751 GNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLIGVAGNNYLNGGDGDDEFQVQGNSL 810 Query: 2249 LSN 2251 N Sbjct: 811 AKN 813 Score = 33.8 bits (77), Expect = 0.012 Identities = 11/39 (28%), Positives = 20/39 (51%) Query: 2192 GTNGSEVLFGSAQADTMYGKYGNDVFVGGAGDDKIDGDD 2230 G+ +++ G+ D + G GND G G+D + G + Sbjct: 733 GSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGN 771 Score = 32.2 bits (73), Expect = 0.036 Identities = 15/50 (30%), Positives = 29/50 (58%) Query: 2764 NAAATSSFNASTGDDQIRGTDNNDIILGHAGNDVLDGGLGDDLLFGGAGS 2813 N+ A + G+D++ G++ D++ G G+D+L GG G+D+ +G Sbjct: 808 NSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKGGYGNDIYRYLSGY 857
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 57.3 bits (138), Expect = 5e-11 Identities = 41/243 (16%), Positives = 68/243 (27%), Gaps = 50/243 (20%) Query: 54 RIVGGTPANASEWKFYTQIVSRNSNRSY-CGASYIGNGYVLTAAHCVDGDLPSQIAVKIG 112 T + T I ++ +G +LT H VD A+K Sbjct: 75 DRHQITDTTNGHYAPVTYIQVEAPTGTFIASGVVVGKDTLLTNKHVVDATHGDPHALKAF 134 Query: 113 GVVYNGTD--GVRSNVSQIYMHPAYNKSTFENDIALLKLSQIPQGVTAVDIAAGSLIQYA 170 N + QI + E D+A++K S Q G +++ A Sbjct: 135 PSAINQDNYPNGGFTAEQITKYSG------EGDLAIVKFSPNEQNKH-----IGEVVKPA 183 Query: 171 --------AVGDWLTVAGLGRTTEGGSSPTVLQEVDVPLISDATCRQAGGSYANVGDVAF 222 V +TV G G P I+ Sbjct: 184 TMSNNAETQVNQNITVTGY-----PGDKPVATMWESKGKITYLK---------GEAMQYD 229 Query: 223 CAGVPQGGIDSCQGDSGGPIVINRAGSITQLGIVSWGIGCARPGKYGVYSDIAALRSFVD 282 + G+SG P V N + +GI G+ G + ++ R+F+ Sbjct: 230 LSTTG--------GNSGSP-VFNEKNEV--IGIHWGGVPNEFNGAVFINENV---RNFLK 275 Query: 283 GIV 285 + Sbjct: 276 QNI 278
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 46.5 bits (110), Expect = 4e-09 Identities = 23/112 (20%), Positives = 53/112 (47%), Gaps = 11/112 (9%) Query: 35 FFKSAEEIEQEKSIARYLDDPECLVFVAKVDEEVVGFVSGHFCELISTVSRPLPMGSVDE 94 +FK E+ + + S Y+++ F+ ++ +G + ++ S + +++ Sbjct: 46 YFKQYEDDDMDVS---YVEEEGKAAFLYYLENNCIGRI-----KIRSNWNGYA---LIED 94 Query: 95 LYVGKPFRQQGIAEALLAKIEQTFRDYGVEQVFVEVWDFNQTAIALYEKNGF 146 + V K +R++G+ ALL K + ++ + +E D N +A Y K+ F Sbjct: 95 IAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHF 146
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 31.5 bits (71), Expect = 0.021 Identities = 39/235 (16%), Positives = 73/235 (31%), Gaps = 30/235 (12%) Query: 283 GFFANEVGRPDPSYVDGQFDQKFSYLHRFNPSLEFIDYHLSDSFDQNEETRFFKQVTKDV 342 FFA + D ++ DY +S +Q + TR T V Sbjct: 325 DFFAIGKPAVL-QNTKNKGDVAIGATVTDASAVLATDYKISFDNNQWQVTRLASNTTFTV 383 Query: 343 IDRINPQLEKVGVPKIRLHEPSGKLSGDLRYNVINLIDEPLDNGLAGYGPSAVNPLTGEI 402 N ++ G + L D + +P+ + + ++ L + Sbjct: 384 TPDANGKVAFDG---LELTFTGTPAVND------SFTLKPVSDAIV-----NMDVLITDE 429 Query: 403 VHAHVNQYS-------GVLRSISDWLWDRIAQDYNKGRVELVAKPDTG-STSNATNSTGE 454 + +++ D + K + A + AT T Sbjct: 430 AKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSDIGNKTATLKTSS 489 Query: 455 STTSNSVASITEASQSTEVVSL----GDMVAFEQSPMANESMADVIAAVKEELEA 505 +T N V ++ QS V+L G++ F+Q +AN A V+ +A Sbjct: 490 ATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLAN---AQVLQTANAIFDA 541
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 27.4 bits (60), Expect = 0.014 Identities = 10/27 (37%), Positives = 19/27 (70%) Query: 2 ETIDKIKQQIAENPILLYMKGSPKLPS 28 +TIDK+K NP+ L+++ + K+P+ Sbjct: 988 QTIDKLKDSTKHNPMNLWVESAKKVPA 1014
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 122 bits (307), Expect = 4e-40 Identities = 48/87 (55%), Positives = 62/87 (71%) Query: 9 NKTQLVESIAANADISKASAGRALDAFIEAVSGTLQSGDQVALVGFGTFSVRTRAARTGR 68 NK L+ +A +++K + A+DA AVS L G++V L+GFG F VR RAAR GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGR 62 Query: 69 NPKTGEEIQIAEAKVPSFKAGKALKDA 95 NP+TGEEI+I +KVP+FKAGKALKDA Sbjct: 63 NPQTGEEIKIKASKVPAFKAGKALKDA 89
>BACINVASINB#Salmonella/Shigella invasin protein B signature. Length = 593 Score = 36.3 bits (83), Expect = 5e-04 Identities = 44/165 (26%), Positives = 76/165 (46%), Gaps = 15/165 (9%) Query: 131 RSAISQFEG------FIKLNKKIPPEVLTSLGGIDEA----ARLADTIAAHMPLKLADKQ 180 R A + FEG F+K K +V+ + G +A A P A ++ Sbjct: 18 RLAEAAFEGVRKNTDFLKAADKAFKDVVATKAGDLKAGTKSGESAINTVGLKPPTDAARE 77 Query: 181 QVLETVDITERLEFLMGQMESEIDILQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKEL 240 ++ +T L LM + ++ + Q+E R+ V + M +SQ+E + + K Q L Sbjct: 78 KLSSEGQLTLLLGKLM-TLLGDVSLSQLESRLA--VWQAMIESQKEMGI-QVSKEFQTAL 133 Query: 241 GESEDGVDEFEALKQKIDSAK-MPKEAREKTEQELQKLKMMSPMS 284 GE+++ D +EA +K D+AK + A +K Q KL+ + P Sbjct: 134 GEAQEATDLYEASIKKTDTAKSVYDAATKKLTQAQNKLQSLDPAD 178
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 33.6 bits (77), Expect = 0.002 Identities = 21/161 (13%), Positives = 50/161 (31%), Gaps = 20/161 (12%) Query: 313 HRQQKHRQIERVQQEAKQKLEFLVMERTAELQAEIAQRTKTEQALRLTQDELIQAAKLAV 372 Q Q + QK E + ++ AE +A+ + E R+ + L + L Sbjct: 187 LTSLIKEQFSTWQNQKYQK-ELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLH 245 Query: 373 IGQMSASISHELNNPLAAIRSFADNGRLFLEKEKYPRVDENLSRISALTERMAKISQQLR 432 ++ + L + + + S++ + + ++ + Sbjct: 246 KQAIAK------HAVLEQENKYVEAVN---------ELRVYKSQLEQIESEILSAKEEYQ 290 Query: 433 SFA---RKSAGDELVEARLMPVLLSANELMKPSLKSARVQL 470 + D+L + LL+ EL K + + Sbjct: 291 LVTQLFKNEILDKLRQTTDNIGLLT-LELAKNEERQQASVI 330
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 453 bits (1168), Expect = e-159 Identities = 168/479 (35%), Positives = 242/479 (50%), Gaps = 56/479 (11%) Query: 7 IDDESDLRLAVEQSFELAEIEANFFADAESALLAMKAQTQPAVVITDICLPGISGMDLLN 66 DD++ +R + Q+ A + ++A + + A +V+TD+ +P + DLL Sbjct: 9 ADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAG-DGDLVVTDVVMPDENAFDLLP 67 Query: 67 TLIHRDPDLPVIMITGHGDISMAVKALHNGAYDFIEKPFASEHLVETVKRAIEKRQLTNE 126 + PDLPV++++ A+KA GAYD++ KPF L+ + RA+ + + Sbjct: 68 RIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR--- 124 Query: 127 NQLLRQSLKASKTLGPRIIGETPSIQELRATISHIADTQADILLFGETGTGKELIARSIH 186 L+ G ++G + ++QE+ ++ + T +++ GE+GTGKEL+AR++H Sbjct: 125 ---RPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALH 181 Query: 187 EQSPRREKNFVALNCGAIPENLIESELYGHEKGAFTGADSQRIGKFEFAQGGTLFLDEIE 246 + RR FVA+N AIP +LIESEL+GHEKGAFTGA ++ G+FE A+GGTLFLDEI Sbjct: 182 DYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIG 241 Query: 247 SMPMQAQIRLLRVLQERVIERVGSNQLLPLDVRIIAATKVDLKQAAANGEFRQDLYYRLN 306 MPM AQ RLLRVLQ+ VG + DVRI+AAT DLKQ+ G FR+DLYYRLN Sbjct: 242 DMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLN 301 Query: 307 VVTLNLPPLRERKEDIAALFHHFLLVAAARYAKTVPALSASDLQQLLAHNWPGNVRELRN 366 VV L LPPLR+R EDI L HF+ A + V L+ + AH WPGNVREL N Sbjct: 302 VVPLRLPPLRDRAEDIPDLVRHFVQ-QAEKEGLDVKRFDQEALELMKAHPWPGNVRELEN 360 Query: 367 AAERYILL---------------------------------------------GKLAQLG 381 R L A G Sbjct: 361 LVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFG 420 Query: 382 ETPASTTVHYALSDQVAEFEKSVIEQTLMECGGSIKETMDKLQVARKTLYDKMQRYGLD 440 + + + +AE E +I L G+ + D L + R TL K++ G+ Sbjct: 421 DALPPSGL---YDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGVS 476
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 753 bits (1946), Expect = 0.0 Identities = 282/571 (49%), Positives = 406/571 (71%), Gaps = 2/571 (0%) Query: 1 MISGILASPGIAIGKALLLQEDEIVLNTNTITKAQVEAEVQRFYDARSKSSAQLETIKQK 60 I+GI AS G+AI KA + E + + +IT V E+++ A KS +L IK + Sbjct: 4 KITGIAASSGVAIAKAFIHLEPNVDIEKTSIT--DVSTEIEKLTAALEKSKEELRAIKDQ 61 Query: 61 ALETFGEEKEAIFEGHIMLLEDEELEEEILALIKKEKMTADNAIYTVIEEQATALESLDD 120 + G +K IF H+++L+D EL + I I+ E+M A+ A+ V + + ES+D+ Sbjct: 62 TEASMGADKAEIFAAHLLVLDDPELVDGIKGKIENEQMNAEYALKEVSDMFVSMFESMDN 121 Query: 121 EYLKERATDIRDIGSRFVKNALGINIVSLSDINEQVILVAYDLTPSETAQINLDYVLGFA 180 EY+KERA DIRD+ R + + +G+ SL+ I E+ +++A DLTPS+TAQ+N +V GFA Sbjct: 122 EYMKERAADIRDVSKRVLGHLIGVETGSLATIAEETVIIAEDLTPSDTAQLNKQFVKGFA 181 Query: 181 CDIGGRTSHTSIMARSLELPAIVGTNDITKKVKNGDMLILDAMNNKIIVNPSEAQIEEAK 240 DIGGRTSH++IM+RSLE+PA+VGT ++T+K+++GDM+I+D + +IVNP+E +++ + Sbjct: 182 TDIGGRTSHSAIMSRSLEIPAVVGTKEVTEKIQHGDMVIVDGIEGIVIVNPTEEEVKAYE 241 Query: 241 AVKASFLAEKEELAKLKDLHAETLDGHRVEVCGNIGTVKDCDGIIRNGGEGVGLYRTEFL 300 +A+F +K+E AKL + T DG VE+ NIGT KD DG++ NGGEG+GLYRTEFL Sbjct: 242 EKRAAFEKQKQEWAKLVGEPSTTKDGAHVELAANIGTPKDVDGVLANGGEGIGLYRTEFL 301 Query: 301 FMDRDALPTEEEQYQAYKEVAEAMEGQAVIIRTMDIGGDKDLPYMDLPKEMNPFLGWRAV 360 +MDRD LPTEEEQ++AYKEV + M+G+ V+IRT+DIGGDK+L Y+ LPKE+NPFLG+RA+ Sbjct: 302 YMDRDQLPTEEEQFEAYKEVVQRMDGKPVVIRTLDIGGDKELSYLQLPKELNPFLGFRAI 361 Query: 361 RISLDRREILRDQLRGILRASAHGKLRIMFPMIISVEEIRALKEAIEEYKAELRAEGLAF 420 R+ L++++I R QLR +LRAS +G L++MFPMI ++EE+R K ++E K +L +EG+ Sbjct: 362 RLCLEKQDIFRTQLRALLRASTYGNLKVMFPMIATLEELRQAKAIMQEEKDKLLSEGVDV 421 Query: 421 DENIEIGVMVETPAAAAIAHHLAKEVSFFSIGTNDLTQYTLAVDRGNEMISHLYNPLSPA 480 ++IE+G+MVE P+ A A+ AKEV FFSIGTNDL QYT+A DR NE +S+LY P PA Sbjct: 422 SDSIEVGIMVEIPSTAVAANLFAKEVDFFSIGTNDLIQYTMAADRMNERVSYLYQPYHPA 481 Query: 481 VLTVIKQVIDASHAEGKWTGMCGELAGDERATLLLLGMGLDEFSMSGISIPKVKKVIRNA 540 +L ++ VI A+H+EGKW GMCGE+AGDE A LLLG+GLDEFSMS SI + + Sbjct: 482 ILRLVDMVIKAAHSEGKWVGMCGEMAGDEVAIPLLLGLGLDEFSMSATSILPARSQLLKL 541 Query: 541 NFAAVKAMAEEALSLPTAAEIEACVEKFIAE 571 + +K A++AL L TA E+E V+K + Sbjct: 542 SKEELKPFAQKALMLDTAEEVEQLVKKTYLK 572
>FLAGELLIN#Flagellin signature. Length = 507 Score = 157 bits (397), Expect = 1e-45 Identities = 73/293 (24%), Positives = 121/293 (41%), Gaps = 3/293 (1%) Query: 5 NTNVSAMVAQRHLSTAASQVAETQKNLSSGFRINSASDDAAGMQIANTLHVQTRGLDVAL 64 NTN +++ Q +L+ + S ++ + LSSG RINSA DDAAG IAN +GL A Sbjct: 5 NTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQAS 64 Query: 65 TNAHSAYAVAETAEGALEEGSEILQRLRSLSLQAANGSNSDEDRQSLQLEVVVLKDEVER 124 NA+ ++A+T EGAL E + LQR+R LS+QA NG+NSD D +S+Q E+ +E++R Sbjct: 65 RNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEIDR 124 Query: 125 IARTTTFAGKNLFDGSYGSKSFHLGANSNS-ISLQLKNMRTHVPEMGGYHYLASEPADED 183 ++ T F G + +GAN I++ L+ + + G++ + A Sbjct: 125 VSNQTQFNGVKVLSQD-NQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEATVG 183 Query: 184 WQVDKESRQLSFTFRDSEGDDQSIKISLKPGDSLEEVATYINSQQ-NVVESSVTDDRRLQ 242 + + + ++ + T + N +T D Sbjct: 184 DLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTDDAEN 243 Query: 243 FYVANRHAPDGLNISGSLEGELDFEPQGQVTLDELDISSVGGAQLAIAVVDTA 295 + + + +G D D V D Sbjct: 244 NTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGN 296 Score = 105 bits (262), Expect = 5e-27 Identities = 46/213 (21%), Positives = 88/213 (41%), Gaps = 19/213 (8%) Query: 181 DEDWQVDKESRQLSFTFRDSEGDDQSIKISLKPGDSLEE-VATYINSQQNVVESSVTDDR 239 D + +V T ++ + + S + + +N Q + + + Sbjct: 294 DGNGKVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESA 353 Query: 240 RLQFYVANRHAPDGLNISGSLEGELDFEPQGQVTLD------------------ELDISS 281 +L AN I+ + +VTL E ++ Sbjct: 354 KLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINEDAAAA 413 Query: 282 VGGAQLAIAVVDTAIQYLDSHRSEIGSFQNRVEGTMDNLQSINRNVTESKGRIWDTDFAK 341 +A +D+A+ +D+ RS +G+ QNR + + NL + N+ ++ RI D D+A Sbjct: 414 KKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIEDADYAT 473 Query: 342 ASTALVKSQVLQQATSALLAQAKQAPGSAIGLL 374 + + K+Q+LQQA +++LAQA Q P + + LL Sbjct: 474 EVSNMSKAQILQQAGTSVLAQANQVPQNVLSLL 506
>FLAGELLIN#Flagellin signature. Length = 507 Score = 193 bits (492), Expect = 4e-59 Identities = 91/297 (30%), Positives = 148/297 (49%), Gaps = 2/297 (0%) Query: 2 AVNVNTNVAAMTAQRYLNNANSAQQTSMERLSSGFKINSAKDDAAGLQISNRLNVQSRGL 61 A +NTN ++ Q LN + S+ +++ERLSSG +INSAKDDAAG I+NR +GL Sbjct: 1 AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60 Query: 62 DVAVRNANDGISIAQTAEGAMNETTNILQRMRDLSLQSANGSNSKSERVAIQEEITALND 121 A RNANDGISIAQT EGA+NE N LQR+R+LS+Q+ NG+NS S+ +IQ+EI + Sbjct: 61 TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120 Query: 122 ELNRIAETTSFGGNKLLNGTYGTKAMQIGADNGEAVMLSLKDMRSDNVMMGGVSYQAEEG 181 E++R++ T F G K+L+ +Q+GA++GE + + L+ + ++ + G + + Sbjct: 121 EIDRVSNQTQFNGVKVLSQD-NQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKE 179 Query: 182 KDKNWNVAAGDNDLTIALTDSFGNEQEIEINAKAGDDIEELATYINGQTDLVKASVGEGG 241 ++ N N+ +++N+ A T + Sbjct: 180 ATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTD 239 Query: 242 KLQIFAGNNKVQGEIAFSGSLAGELGLGEGKNVTV-DTIDVTTVQGAQESVAIVDAA 297 + + + + +G+ + G K DT D V ++ D Sbjct: 240 DAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGN 296 Score = 130 bits (327), Expect = 1e-35 Identities = 81/377 (21%), Positives = 137/377 (36%), Gaps = 21/377 (5%) Query: 19 NNANSAQQTSMERLSSGFKINSAKDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTA 78 N Q + ++ G L + ++ + + Sbjct: 132 NGVKVLSQDNQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEATVGDLKSSFKN 191 Query: 79 EGAMNETTNILQRMRDLSLQSANGSNSKSERVAIQEEITALNDELNRIAETTSFGGNKLL 138 + + R A +++ + V + + A N +L + + Sbjct: 192 VTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTDDAENNTAVDLFK 251 Query: 139 NGTYGTKAMQIGADNGEAVMLSLKDMRSDNVMMGGVSYQAEEGKDKNWNVAAGDNDLTIA 198 + A G D + + G D N V+ N + Sbjct: 252 TTKSTAGTAEAKAIAGAIKGGKEGDTFDYKG--VTFTIDTKTGNDGNGKVSTTINGEKVT 309 Query: 199 LTDSFGNEQEIEINAKAGDDIEEL-ATYINGQTDLVKASVGEGGKLQIFAGNNKVQGEIA 257 LT + ++A + + + +NGQ + E KL NN V+GE Sbjct: 310 LTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSDLEANNAVKGESK 369 Query: 258 FSGSLAGELGLGEGKNVTVD------------------TIDVTTVQGAQESVAIVDAALK 299 + + A G VT+ + +A +D+AL Sbjct: 370 ITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINEDAAAAKKSTANPLASIDSALS 429 Query: 300 YVDSHRAELGAFQNRFNHAISNLDNINENVNASKSRIKDTDFAKETTQLTKTQILSQASS 359 VD+ R+ LGA QNRF+ AI+NL N N+N+++SRI+D D+A E + ++K QIL QA + Sbjct: 430 KVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIEDADYATEVSNMSKAQILQQAGT 489 Query: 360 SILAQAKQAPNSALSLL 376 S+LAQA Q P + LSLL Sbjct: 490 SVLAQANQVPQNVLSLL 506
>FLAGELLIN#Flagellin signature. Length = 507 Score = 179 bits (454), Expect = 2e-53 Identities = 94/370 (25%), Positives = 160/370 (43%), Gaps = 10/370 (2%) Query: 2 AVTVSTNVSAMTAQRYLNKATDELNTSMERLSSGHKINSAKDDAAGLQISNRLTAQSRGL 61 A ++TN ++ Q LNK+ L++++ERLSSG +INSAKDDAAG I+NR T+ +GL Sbjct: 1 AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60 Query: 62 DVAMRNANDGISIAQTAEGAMNEATAVLQRMRDLSIQSANGTNSTSERQAIHEEASALQD 121 A RNANDGISIAQT EGA+NE LQR+R+LS+Q+ NGTNS S+ ++I +E + Sbjct: 61 TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120 Query: 122 EINRIAETTSFGGRRLLNGTFGDAAFQIGSNSGEAMIMGLTSIRADDFRMGGTTFQSENG 181 EI+R++ T F G ++L+ Q+G+N GE + + L I + G Sbjct: 121 EIDRVSNQTQFNGVKVLSQDNQ-MKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKE 179 Query: 182 KNKDWEVSADNAELNIVLPEMGEDEDGNVIDLEINIMAKSGDDIEELATYINGQSDYINA 241 S+ + +++ + + T + Sbjct: 180 ATVGDLKSSFKNVTGY------DTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAAN 233 Query: 242 SVSEDGKLQIFVAQPNVKGDISISGSLASELGLSDEPIATTVQDLDLRTVQGSQNAISVI 301 + A K S +G+ ++ D + V + + + Sbjct: 234 GQLTTDDAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGN 293 Query: 302 DAALK---YVDSQRADLGAKQNRLSHSINNLANVQENVDASNSRIKDTDFAKETTQMTKA 358 D K ++ ++ L + + A +Q + + S + + T+ A Sbjct: 294 DGNGKVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESA 353 Query: 359 QILQQAGTSI 368 ++ + Sbjct: 354 KLSDLEANNA 363 Score = 124 bits (313), Expect = 1e-33 Identities = 69/243 (28%), Positives = 118/243 (48%), Gaps = 24/243 (9%) Query: 160 GLTSIRADDFRMGGTTFQSENGKNKDWEVSADNAELNIVLPEMGEDEDGNVIDLEINIMA 219 G D++ T ++ G + + +VS + L ++ N+ A Sbjct: 271 GGKEGDTFDYKGVTFTIDTKTGNDGNGKVSTTINGEKVTL------TVADITAGAANVDA 324 Query: 220 KSGDDIEEL-ATYINGQSDYINASVSEDGKLQIFVAQPNVKGDISISGSLASELGLSDEP 278 + + + + +NGQ + + + +E KL A VKG+ I+ + A + Sbjct: 325 ATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSDLEANNAVKGESKITVNGAEYTANAAGD 384 Query: 279 -----------------IATTVQDLDLRTVQGSQNAISVIDAALKYVDSQRADLGAKQNR 321 ++T + + + + N ++ ID+AL VD+ R+ LGA QNR Sbjct: 385 KVTLAGKTMFIDKTASGVSTLINEDAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNR 444 Query: 322 LSHSINNLANVQENVDASNSRIKDTDFAKETTQMTKAQILQQAGTSILAQAKQLPNSAMS 381 +I NL N N++++ SRI+D D+A E + M+KAQILQQAGTS+LAQA Q+P + +S Sbjct: 445 FDSAITNLGNTVTNLNSARSRIEDADYATEVSNMSKAQILQQAGTSVLAQANQVPQNVLS 504 Query: 382 LLQ 384 LL+ Sbjct: 505 LLR 507
>FLAGELLIN#Flagellin signature. Length = 507 Score = 32.7 bits (74), Expect = 0.003 Identities = 22/135 (16%), Positives = 48/135 (35%), Gaps = 2/135 (1%) Query: 9 HNYQSV--QNDLRRMENKIHHNQAQLASGKKLLSPSDDPLATHYIQNIGQQSEQLKQYLD 66 N S+ QN+L + ++ + +L+SG ++ S DD + L Q Sbjct: 6 TNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQASR 65 Query: 67 AIVLVRNRLEQHEVNVANQEQFADEAKRTVMEMINGALSPEDRRAKRREIEELATNFLYL 126 + + E + + ++ NG S D ++ + EI++ + Sbjct: 66 NANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEIDRV 125 Query: 127 ANAQDESGNYTFAGT 141 +N +G + Sbjct: 126 SNQTQFNGVKVLSQD 140
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 465 bits (1199), Expect = e-160 Identities = 113/457 (24%), Positives = 208/457 (45%), Gaps = 17/457 (3%) Query: 3 SDLLNVGTQSVLTAQRQLNTTGHNISNVNTEGYSRQSVIQATNDPRQFGGSTYGMGVHVE 62 S L+N + AQ LNT +NIS+ N GY+RQ+ I A + G G GV+V Sbjct: 1 SSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVS 60 Query: 63 NVRRSWDQFAVNELNLSTTNFANKGDVEANLEMLSSMLSSVASKKIPENLNEWFDALKTL 122 V+R +D F N+L + T + + + +MLS+ ++ + + ++F +L+TL Sbjct: 61 GVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST-STSSLATQMQDFFTSLQTL 119 Query: 123 ADSPNDIGARKVLLEKARIISETVNGFHETIRQQYDVTNKKLDMGIERINQIAVEIRDIH 182 + D AR+ L+ K+ + + +R Q N + +++IN A +I ++ Sbjct: 120 VSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASLN 179 Query: 183 RLMMRTPG-----PHNDLMDQHEKLVKELSEYTKVTVTPRKNAEGFNVHIGNGHTLVSGT 237 + R G N+L+DQ ++LV EL++ V V+ + +N+ + NG++LV G+ Sbjct: 180 DQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGT-YNITMANGYSLVQGS 238 Query: 238 EASQLKMIDGYPDVHQRRLAIYEG--KSLKPIKSVGLDGKLGAMLDMRDNQIPYVMDELG 295 A QL + D + +A +G +++ + + G LG +L R + + LG Sbjct: 239 TARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTLG 298 Query: 296 RMAAGFSDEVNKLQKQGLDLRGNIGGVIFTDVNAEVIAKSRAVTAPDSQAEVAV--FIND 353 ++A F++ N K G D G+ G F I K + ++ +VA+ + D Sbjct: 299 QLALAFAEAFNTQHKAGFDANGDAGEDFFA------IGKPAVLQNTKNKGDVAIGATVTD 352 Query: 354 LASLKGGEYALRYDGSNYTVTKPSGETVSVSLDSAKSAFYMDGMRVEVRNEPKAGEKILL 413 +++ +Y + +D + + VT+ + T A DG+ + P + L Sbjct: 353 ASAVLATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTL 412 Query: 414 RPTRNSAAQMQVATNDASMIAAQSYEASTSFAQGTAQ 450 +P ++ M V D + IA S E + Q Sbjct: 413 KPVSDAIVNMDVLITDEAKIAMASEEDAGDSDNRNGQ 449 Score = 132 bits (334), Expect = 6e-35 Identities = 33/105 (31%), Positives = 59/105 (56%) Query: 534 EGDNGNLRKMQQIQLDKKMDGNQSTIIDVYHNLNTNVGLRNSTATRLANIAQHENEAAQE 593 + DN N + + +Q + K G + D Y +L +++G + +T + + Sbjct: 442 DSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSDIGNKTATLKTSSATQGNVVTQLSN 501 Query: 594 RIASISGVNLDEEAANMMRFQQAYMASSRIMQAANDTFNTILQLR 638 + SISGVNLDEE N+ RFQQ Y+A+++++Q AN F+ ++ +R Sbjct: 502 QQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINIR 546
>FLGFLGJ#Flagellar protein FlgJ signature. Length = 313 Score = 270 bits (690), Expect = 6e-92 Identities = 93/299 (31%), Positives = 154/299 (51%), Gaps = 20/299 (6%) Query: 13 DISNLDKLRQQAVNDKDGGEQKALEAAAKQFESIFTSMLFKSMREANSGFESDLMNSQNQ 72 D +L++L+ +A D + A+Q E +F M+ KSMR+A + L +S++ Sbjct: 14 DAQSLNELKAKAGEDPAAN----IRPVARQVEGMFVQMMLKSMRDALP--KDGLFSSEHT 67 Query: 73 LFYRQMLDEQMASELSSSGSLGLADMIVAQLSSGKGIDKNELAMREAGQEAPQRMPINRS 132 Y M D+Q+A ++++ LGLA+M+V Q++ + + + P + P+ + Sbjct: 68 RLYTSMYDQQIAQQMTAGKGLGLAEMMVKQMTPEQPLPEESTPAA------PMKFPL-ET 120 Query: 133 KARETEQRLIESGQLARS----DKARFDSPESFITSMRPYAERVAKSLGVEPSLLLAQAA 188 R Q L + Q A D DS ++F+ + A+ ++ GV L+LAQAA Sbjct: 121 VVRYQNQALSQLVQKAVPRNYDDSLPGDS-KAFLAQLSLPAQLASQQSGVPHHLILAQAA 179 Query: 189 LETGWGQKVVKNARGS-SNNLFNIKADRSWAGDKVTTQTLEFHDNTPVKETAAFRSYDSF 247 LE+GWGQ+ ++ G S NLF +KA +W G T E+ + K A FR Y S+ Sbjct: 180 LESGWGQRQIRRENGEPSYNLFGVKASGNWKGPVTEITTTEYENGEAKKVKAKFRVYSSY 239 Query: 248 ADSFNDYVAFLNNNPRYQTALQHNGDSESFIRGIHRAGYATDPEYADKVLKVQQRIDNM 306 ++ +DYV L NPRY A+ +E + + AGYATDP YA K+ + Q++ ++ Sbjct: 240 LEALSDYVGLLTRNPRY-AAVTTAASAEQGAQALQDAGYATDPHYARKLTNMIQQMKSI 297
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 418 bits (1077), Expect = e-148 Identities = 163/365 (44%), Positives = 223/365 (61%), Gaps = 12/365 (3%) Query: 5 TLLLLCFVLPMTSAYAARIKDVAQVAGVRSNQLVGYGLVSGLPGTGES---TPFTEQSFA 61 L P A +RIKD+A + R NQL+GYGLV GL GTG+S +PFTEQS Sbjct: 13 FSALPFLSTPPAQADTSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDSLRSSPFTEQSMR 72 Query: 62 AMLQNFGIQLPAGTKPKIKNVAAVMVTAELPPFSKPGQQIDVTVSSIGSAKSLRGGTLLQ 121 AMLQN GI G KN+AAVMVTA LPPF+ PG ++DVTVSS+G A SLRGG L+ Sbjct: 73 AMLQNLGITTQGGQ-SNAKNIAAVMVTANLPPFASPGSRVDVTVSSLGDATSLRGGNLIM 131 Query: 122 TFLKGLDGQVYAVAQGNLVVSGFSAEGADGSKIVGNNPTVGIISSGAMVEREVPTPFGRG 181 T L G DGQ+YAVAQG L+V+GFSA+G D + + T + +GA++ERE+P+ F Sbjct: 132 TSLSGADGQIYAVAQGALIVNGFSAQG-DAATLTQGVTTSARVPNGAIIERELPSKFKDS 190 Query: 182 DFITFNLLESDFTTAQRMADAVNNF----LGPQMASAVDATSVRVRAPRDISQRVAFLSA 237 + L DF+TA R+AD VN F G +A D+ + V+ PR ++ ++ Sbjct: 191 VNLVLQLRNPDFSTAVRVADVVNAFARARYGDPIAEPRDSQEIAVQKPR-VADLTRLMAE 249 Query: 238 IENLEFDPADGAAKIIVNSRTGTIVVGKHVRLKPAAVTHGGMTVAIKENLSVSQPNGFSG 297 IENL + D AK+++N RTGTIV+G VR+ AV++G +TV + E+ V QP FS Sbjct: 250 IENLTVET-DTPAKVVINERTGTIVIGADVRISRVAVSYGTLTVQVTESPQVIQPAPFSR 308 Query: 298 GETVVVPNSDISVTEEQGKMFKFEPGLTLDDLVRAVNQVGAAPSDLMAILQALKQAGAIE 357 G+T V P +DI +E K+ E G L LV +N +G ++AILQ +K AGA++ Sbjct: 309 GQTAVQPQTDIMAMQEGSKVAIVE-GPDLRTLVAGLNSIGLKADGIIAILQGIKSAGALQ 367 Query: 358 GQLII 362 +L++ Sbjct: 368 AELVL 372
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 147 bits (373), Expect = 5e-46 Identities = 73/204 (35%), Positives = 104/204 (50%), Gaps = 13/204 (6%) Query: 65 AWAPIHPKQQ--------PEHYAAETGSLFSVNHLSN-----LYDDSKPRGVGDIITVTL 111 AW P P Q P GS+F N L++D +PR +GD +T+ L Sbjct: 23 AWIPSTPLVQGATSAQPVPGPTPVANGSIFQSAQPINYGYQPLFEDRRPRNIGDTLTIVL 82 Query: 112 DEKTNASKSANADLSKSNDSSMDPLEVGGQELKIDGKYNFSYNLTNSNNFTGDASAKQSN 171 E +ASKS++A+ S+ ++ V + G + N F G A SN Sbjct: 83 QENVSASKSSSANASRDGKTNFGFDTVPRYLQGLFGNARADVEASGGNTFNGKGGANASN 142 Query: 172 SISGYITVEVIEVLANGNLVIRGEKWLTLNTGDEYIRLSGTIRPDDISFDNTIASNRVSN 231 + SG +TV V +VL NGNL + GEK + +N G E+IR SG + P IS NT+ S +V++ Sbjct: 143 TFSGTLTVTVDQVLVNGNLHVVGEKQIAINQGTEFIRFSGVVNPRTISGSNTVPSTQVAD 202 Query: 232 ARIQYSGTGTQQDMQEPGFLARFF 255 ARI+Y G G + Q G+L RFF Sbjct: 203 ARIEYVGNGYINEAQNMGWLQRFF 226
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 43.0 bits (101), Expect = 7e-07 Identities = 10/47 (21%), Positives = 22/47 (46%) Query: 214 EVRQSMLETSNVNVTEELVNMIEAQRVYEMNSKVISSVDKMMSFVNQ 260 ++ S VN+ EE N+ Q+ Y N++V+ + + + + Sbjct: 498 QLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALIN 544 Score = 36.9 bits (85), Expect = 6e-05 Identities = 16/77 (20%), Positives = 34/77 (44%), Gaps = 14/77 (18%) Query: 5 LWVSKTGLDAQQTNIATISNNLANASTIGFKKGRAVFEDLFYQNINQPGGQSSQNTQLPS 64 + + +GL+A Q + T SNN+++ + G+ + + + N+ L + Sbjct: 4 INNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTI--------------MAQANSTLGA 49 Query: 65 GLMLGAGSKVVATQKVH 81 G +G G V Q+ + Sbjct: 50 GGWVGNGVYVSGVQREY 66
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 39.2 bits (91), Expect = 3e-05 Identities = 15/33 (45%), Positives = 21/33 (63%) Query: 3 YVSLSGLSAAQLDLNTTSNNIANANTYGFKESR 35 ++SGL+AAQ LNT SNNI++ N G+ Sbjct: 5 NNAMSGLNAAQAALNTASNNISSYNVAGYTRQT 37 Score = 34.5 bits (79), Expect = 8e-04 Identities = 11/49 (22%), Positives = 26/49 (53%) Query: 386 TVSSGALEQSNIDMTQELVDLISAQRNFQANSRALEVHNQLQQNILQIR 434 +S+ S +++ +E +L Q+ + AN++ L+ N + ++ IR Sbjct: 498 QLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINIR 546
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 31.9 bits (72), Expect = 7e-04 Identities = 9/32 (28%), Positives = 14/32 (43%) Query: 99 NVNVMEEMANMISASRAYQTNVQVADASKQML 130 VN+ EE N+ + Y N QV + + Sbjct: 508 GVNLDEEYGNLQRFQQYYLANAQVLQTANAIF 539
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 66.4 bits (162), Expect = 2e-14 Identities = 27/127 (21%), Positives = 53/127 (41%), Gaps = 11/127 (8%) Query: 183 RILIADDSTVARKQVERAITNIGFECVAVKDGKEAYEKLLEMAADGPIRDQISLVISDIE 242 IL+ADD R + +A++ G++ + + + LV++D+ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIA--------AGDGDLVVTDVV 56 Query: 243 MPEMDGYTLTAEIRRHAELKDLYVILHSSLSGVFNQAMVERVGANAFIAK-FNPDELGNA 301 MP+ + + L I++ DL V++ S+ + GA ++ K F+ EL Sbjct: 57 MPDENAFDLLPRIKKARP--DLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGI 114 Query: 302 VKTALTN 308 + AL Sbjct: 115 IGRALAE 121
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 31.1 bits (70), Expect = 0.001 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%) Query: 4 KQSGFSLIEVLISFLLIGIGALGLIKLQVYMERKADFAER 43 +Q GF+L+E+++ LL+G+ A G++ L R A+ Sbjct: 2 RQRGFTLLEMMLILLLMGVSA-GMVLLAFPASRDDSAAQT 40
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 34.9 bits (80), Expect = 5e-05 Identities = 11/28 (39%), Positives = 20/28 (71%) Query: 3 RGFTLLELLITVAVLAVILAWAVPSFTG 30 RGFTLLE+++ + ++ V+ + VP+ G Sbjct: 8 RGFTLLEIMVVIVIIGVLASLVVPNLMG 35
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 42.2 bits (99), Expect = 6e-08 Identities = 16/60 (26%), Positives = 34/60 (56%), Gaps = 2/60 (3%) Query: 2 TLIELLIAVVIVGILASISYPSYKNYVIESHRTVAKADMAKI--QLELERSYNSGYQWTQ 59 TL+E+++ +VI+G+LAS+ P+ ++ + A +D+ + L++ + N Y T Sbjct: 11 TLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKLDNHHYPTTN 70
>PF07132#Harpin protein (HrpN) Length = 356 Score = 29.7 bits (66), Expect = 0.022 Identities = 15/37 (40%), Positives = 18/37 (48%) Query: 76 QGGGGFGGGFGGGGADFGDIFGDVFGDIFGGGRRGGG 112 GGG GGG GG G+ G + G + G GGG Sbjct: 64 MMGGGLGGGLGGLGSSLGGLGGGLLGGGLGGGLGSSL 100
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 137 bits (347), Expect = 6e-38 Identities = 80/385 (20%), Positives = 144/385 (37%), Gaps = 81/385 (21%) Query: 5 IGIDLGTTNSCVAVLDG----DKPRVIE-NAEGERTTPSVIAYTDGETLVGQPAKRQAVT 59 + IDLGT N+ + V ++P V+ + + SV A VG AK+ Sbjct: 13 LSIDLGTANTLIYVKGQGIVLNEPSVVAIRQDRAGSPKSVAA-------VGHDAKQMLGR 65 Query: 60 NPENTLFAIKRLIGRRFEDEEVQRDIEIMPYKIVKADNGDAWVEAKGQKMAAPQVSAEVL 119 P N + AI+ + D V + ++L Sbjct: 66 TPGN-IAAIRPMKDGVIADFFV---------------------------------TEKML 91 Query: 120 KK-MKKTAEDFLGEEVTGAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAY 178 + +K+ + ++ VP +R+A +++ + AG +I EP AAA+ Sbjct: 92 QHFIKQVHSNSFMRPSPRVLVCVPVGATQVERRAIRESAQGAGAREVFLIEEPMAAAIGA 151 Query: 179 GLDKQGGDRTIAVYDLGGGTFDISIIEIDEVEGEKTFEVLATNGDTHLGGEDFDNRLINY 238 GL V D+GGGT ++++I ++ V + +GG+ FD +INY Sbjct: 152 GLPVS-EATGSMVVDIGGGTTEVAVISLNGV---------VYSSSVRIGGDRFDEAIINY 201 Query: 239 LVAEFKKDQGIDLKNDPLAMQRVKEAAEKAKIELSST----NQTDVNLPYITADATGPKH 294 + + G + AE+ K E+ S ++ + P+ Sbjct: 202 VRRNYGSLIG-------------EATAERIKHEIGSAYPGDEVREIEVRGRNLAEGVPRG 248 Query: 295 MNIKVTRAKLESLVEDLVQRSLEPLKVALADA--DLSVGDITD--VILVGGQTRMPMVQA 350 + + LE+L E L + + VAL +L+ DI++ ++L GG + + Sbjct: 249 FTLN-SNEILEALQEPLTG-IVSAVMVALEQCPPELA-SDISERGMVLTGGGALLRNLDR 305 Query: 351 KVTEFFGKEPRRDVNPDEAVAVGAA 375 + E G +P VA G Sbjct: 306 LLMEETGIPVVVAEDPLTCVARGGG 330
>adhesinb#Adhesin B signature. Length = 310 Score = 91.8 bits (228), Expect = 1e-23 Identities = 47/220 (21%), Positives = 87/220 (39%), Gaps = 18/220 (8%) Query: 20 AGLNVFVCQPDWADLVRQHAPD-ARIYSATTAMQDPHYVQARPSLIAQMRRADLVVCSGA 78 + LNV AD+ + A D ++S QDPH + P + + +ADL+ +G Sbjct: 32 SKLNVVATNSIIADITKNIAGDKINLHSIVPVGQDPHEYEPLPEDVKKTSQADLIFYNGI 91 Query: 79 ELEIGWLPELQRQSRNPKVQNGQTGLFWVSDYVQMLDKHEQLDRAMGDVHAHGNPHVQFA 138 LE G + N K + + VS+ V ++ Q ++ D PH Sbjct: 92 NLETGGNAWFTKLVENAK-KKENKDYYAVSEGVDVIYLEGQSEKGKED------PHAWLN 144 Query: 139 LADMPAVSRALADRLALIDPDNQSLYKGMGVKFRHAWQKRLSVWREQARS----LRDMQ- 193 L + ++ +A RL+ DP N+ Y+ K A+ ++LS ++A+ + + Sbjct: 145 LENGIIYAQNIAKRLSEKDPANKETYE----KNLKAYVEKLSALDKEAKEKFNNIPGEKK 200 Query: 194 -VVGYHQTYRYLYAWLGIEQVADLEPKPGLPPTMAHLQKL 232 +V ++Y + E T ++ L Sbjct: 201 MIVTSEGCFKYFSKAYNVPSAYIWEINTEEEGTPDQIKTL 240
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 29.5 bits (66), Expect = 0.039 Identities = 32/161 (19%), Positives = 66/161 (40%), Gaps = 14/161 (8%) Query: 35 LLVAGLLVGPVSGWLQPELLLGDLLFPMVSLAVAVILFEGSLTLNFREIRGVSNTVW-SI 93 + G ++G V L++ + + A ++ +E RG + + SI Sbjct: 88 INCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSI 147 Query: 94 VTLGAVVSWGLTSTATHYLLGFDWPLALLFGSLTVVTGPTVIVPLLRTVRPSTRLSNILR 153 V +G V + HY W LL +T++T P L++ ++ R+ Sbjct: 148 VAMGEGVGPAIGGMIAHY---IHWSYLLLIPMITIITVPF----LMKLLKKEVRIKGHFD 200 Query: 154 WEGILIDPLGALFVVMVYEFIVSSSETHSLVVLAWILAIGL 194 +GI++ +G +F ++ F S S + +V +L+ + Sbjct: 201 IKGIILMSVGIVFFML---FTTSYSISFLIV---SVLSFLI 235
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 28.2 bits (62), Expect = 0.006 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 6/48 (12%) Query: 51 ELGEVNKSDYEQGYLEGVAEYCNPDFAYQMGLSGQYYEGVCEGTEQAQ 98 +L ++ +EQGY G+AE Q G Y EG+ +G EQ Sbjct: 43 QLAQLQMQAHEQGYQAGIAE------GRQQGHKQGYQEGLAQGLEQGL 84
>PF06580#Sensor histidine kinase Length = 349 Score = 223 bits (570), Expect = 3e-70 Identities = 68/200 (34%), Positives = 115/200 (57%), Gaps = 2/200 (1%) Query: 355 DYQQQQTLLTQSEIKLLHAQVNPHFLFNALNTISAVIRRDPDKARELIQNLSHFFRSNLK 414 D + ++ ++++ L AQ+NPHF+FNALN I A+I DP KARE++ +LS R +L+ Sbjct: 150 DQWKMASMAQEAQLMALKAQINPHFMFNALNNIRALILEDPTKAREMLTSLSELMRYSLR 209 Query: 415 -QNINTVTLKEELAHVNAYLSIEKARFADRLEIEIDITPELFDTKLPSFTLQPLVENAIK 473 N V+L +EL V++YL + +F DRL+ E I P + D ++P +Q LVEN IK Sbjct: 210 YSNARQVSLADELTVVDSYLQLASIQFEDRLQFENQINPAIMDVQVPPMLVQTLVENGIK 269 Query: 474 HGISNMLEGGRVRIYSQSCEQGDVIVVEDNAGSYQPPAENHSGLGMEIVDKRLTHHFGRD 533 HGI+ + +GG++ + + VE+ + +G G++ V +RL +G + Sbjct: 270 HGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKESTGTGLQNVRERLQMLYGTE 329 Query: 534 SALKIEAKEHQFTKMSFIIP 553 + +K+ K+ + M +IP Sbjct: 330 AQIKLSEKQGKVNAM-VLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 68.3 bits (167), Expect = 2e-15 Identities = 36/116 (31%), Positives = 53/116 (45%), Gaps = 7/116 (6%) Query: 3 TALVIDDEPFAREELTDLLSETG-DIDVIGDAANAIVGLKKINELKPDVVFLDIQMPQVT 61 T LV DD+ R L LS G D+ + +AA + I D+V D+ MP Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATL---WRWIAAGDGDLVVTDVVMPDEN 61 Query: 62 GIELLGMM-DPDTMPYVVFVTAYDQY--AIQAFEDNAFDYLLKPVDPERLRKTVKR 114 +LL + V+ ++A + + AI+A E A+DYL KP D L + R Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117
>INFPOTNTIATR#Macrophage infectivity potentiator signature. Length = 233 Score = 32.3 bits (73), Expect = 5e-04 Identities = 14/32 (43%), Positives = 19/32 (59%) Query: 5 NNNSAVTLHFTIKMKDGSVADSTHNMGKPAKF 36 + VT+ +T + DG+V DST GKPA F Sbjct: 142 GKSDTVTVEYTGTLIDGTVFDSTEKAGKPATF 173
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 29.4 bits (66), Expect = 0.021 Identities = 10/28 (35%), Positives = 16/28 (57%) Query: 347 GCFDILHAGHVSYLNNAAKLGDRLIVAV 374 G FD + GH+ + +L D++ VAV Sbjct: 7 GSFDPITFGHLDIIERGCRLFDQVYVAV 34
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 30.4 bits (68), Expect = 0.041 Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 6/76 (7%) Query: 734 AQRIIHIFSTRTASGILYEVDTRLRPSGASGLLVCPVDAFEEYQHNDAWTWEHQALVRAR 793 A R+ + F + G Y V + R G L +A + H D W E QA + Sbjct: 738 ASRLENDFKVAGSDG--YAVKGKYRTHGVGASL----EAGRRFTHADGWFLEPQAELAVF 791 Query: 794 MIYGDEHLASEFHRVR 809 G + A+ RVR Sbjct: 792 RAGGGAYRAANGLRVR 807
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 31.1 bits (70), Expect = 0.010 Identities = 14/93 (15%), Positives = 38/93 (40%) Query: 167 SAQEEFNEIDQLATAMSEMTSTVQTVADHANNASSLTEQASQQAKKGQQFLQGTVSKMSQ 226 A+ + + + +S + + T + +Q S + + ++ ++Q Sbjct: 131 GAENIGDNLGKAGGILSTFQNFLGTALSSMKIDELIKKQKSGGNVSSSELAKASIELINQ 190 Query: 227 LSSDIASSAQAVNQVEERVGAIGSVVGTIQGIS 259 L +AS VN +++ +GSV+ + ++ Sbjct: 191 LVDTVASLNNNVNSFSQQLNTLGSVLSNTKHLN 223
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 33.6 bits (76), Expect = 6e-04 Identities = 33/164 (20%), Positives = 72/164 (43%), Gaps = 17/164 (10%) Query: 47 EKAAEIRAQISHLEK-EADVLK--REIRLKLPRGLFLPVDRTDMLEL--LTQQDKLANLA 101 E +I+ L+K DVL+ E+ ++ F +D + EL L++++K + Sbjct: 74 ETLDKIQQTQDLLKKIPKDVLEIYSELGGEI---YFTDIDLVEHKELQDLSEEEKNS--- 127 Query: 102 KDIAGR---VYGRKLMIPEALQPNFIAYVQRCLDAANQAQNVINELDELLETGFKGREVT 158 + G R + + P I ++ + Q++ V E+ + + ++ + Sbjct: 128 MNSRGEKVPFASRFVFEKKRETPKLIINIKDYAINSEQSKEVYYEIGKGISLDIISKDKS 187 Query: 159 LVAEMINQLDVIEDDTDAMQIGLRQQLMTIESEMNP--IDVMFL 200 L E +N + + DD+D+ + Q+ + E+N ID+ F+ Sbjct: 188 LDPEFLNLIKSLSDDSDSSDLLFSQKFKE-KLELNNKSIDINFI 230
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 30.6 bits (69), Expect = 0.004 Identities = 18/114 (15%), Positives = 34/114 (29%), Gaps = 14/114 (12%) Query: 57 QTNSETGYSEVVDER--GRKGWVQAKFITRQESMAV--RLPRLEKELKEVKSQLANARQN 112 + N S V R + + I + + + EL+ KSQL Sbjct: 222 RINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIES- 280 Query: 113 ADTEKAGLVDSLDTRNQQISDLEKKYSEISDQLASVQTENRQLRAKLDTQKDDL 166 + L + + + +EI D+L L +L ++ Sbjct: 281 ---------EILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQ 325
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 101 bits (253), Expect = 1e-29 Identities = 41/162 (25%), Positives = 69/162 (42%), Gaps = 21/162 (12%) Query: 8 RLAGFTLIEILLVLVLLSLTAVAVIATLPTRSDERGKKYAQSFYQRLQLLNEEAVLSGKD 67 R GFTL+E++L+L+L+ ++A V+ P D+ + F +L+ + + + +G+ Sbjct: 2 RQRGFTLLEMMLILLLMGVSAGMVLLAFPASRDDSAAQTLARFEAQLRFVQQRGLQTGQF 61 Query: 68 FGVRVEEEKSRYTLLKLEADGWQTLELNKIPATTELEDEVAMQLTLGGGAWQ--QDDRLF 125 FGV V D WQ L L + G W + R+ Sbjct: 62 FGVSVHP------------DRWQFLVLEARDGADPAPADDGWS----GYRWLPLRAGRVA 105 Query: 126 KPGSLFDEEM---FAEEEKEKKQRPPQIFILSSGELTPFSLS 164 GS+ ++ FA+ E P + I GE+TPF L+ Sbjct: 106 TSGSIAGGKLNLAFAQGEAWTPGDNPDVLIFPGGEMTPFRLT 147
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 218 bits (557), Expect = 1e-76 Identities = 88/141 (62%), Positives = 107/141 (75%), Gaps = 4/141 (2%) Query: 4 KAKKQAGFTLLEVMVVVVILGILASFVVPNLLGNKEKADQQKAITDIVALENALDMYKLD 63 KQ GFTLLE+MVV+VI+G+LAS VVPNL+GNKEKAD+QKA++DIVALENALDMYKLD Sbjct: 3 ATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKLD 62 Query: 64 NSVYPTTDQGLEALVTKPSS-PEPRNYRNGGYIKRLPKDPWGNEYQYMSPGDKGTIDIFT 122 N YPTT+QGLE+LV P+ P NY GYIKRLP DPWGN+Y ++PG+ G D+ + Sbjct: 63 NHHYPTTNQGLESLVEAPTLPPLAANYNKEGYIKRLPADPWGNDYVLVNPGEHGAYDLLS 122 Query: 123 LGADGQEGGEGAAADIGNWNM 143 G DG+ G E DI NW + Sbjct: 123 AGPDGEMGTED---DITNWGL 140
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 514 bits (1326), Expect = 0.0 Identities = 219/407 (53%), Positives = 304/407 (74%), Gaps = 3/407 (0%) Query: 1 MAAFEYKALDAKGRTKKGTLEGDNARQVRQRLKEQGMVPIEVMETKAKLAKSKSSG---G 57 MA + Y+ALDA+G+ +GT E D+ARQ RQ L+E+G+VP+ V E + KS S+G Sbjct: 1 MAQYHYQALDAQGKKCRGTQEADSARQARQLLRERGLVPLSVDENRGDQQKSGSTGLSLR 60 Query: 58 FKRGISTPELSLITRQISTLVQSGMPLEECLKAVSDQAEKPRIRGMLAAVRAKVTEGYTL 117 K +ST +L+L+TRQ++TLV + MPLEE L AV+ Q+EKP + ++AAVR+KV EG++L Sbjct: 61 RKIRLSTSDLALLTRQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSL 120 Query: 118 ADSLSDYPHIFDELYRSMVAAGEKSGHLDAVLERLADYCENRQKMRSKLLQAMIYPVVLV 177 AD++ +P F+ LY +MVAAGE SGHLDAVL RLADY E RQ+MRS++ QAMIYP VL Sbjct: 121 ADAMKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVLT 180 Query: 178 VFAVTIVAFLLATVVPKIVEPIIQMGQELPQSTQFLLAASEFVQEWGLLLLGSIVFAIYL 237 V A+ +V+ LL+ VVPK+VE I M Q LP ST+ L+ S+ V+ +G +L +++ Sbjct: 181 VVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLALLAGFMA 240 Query: 238 LKTALKKPNVRMAWDRRILSLPLLGKISKGLNTARFARTLSICTSSAIPILEGMRVAVDV 297 + L++ R+++ RR+L LPL+G+I++GLNTAR+ARTLSI +SA+P+L+ MR++ DV Sbjct: 241 FRVMLRQEKRRVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAMRISGDV 300 Query: 298 MSNQFVKQQVLLAADSVREGASLRKALDQTRLFPPMMLHMIASGEQSGELESMLTRAADN 357 MSN + + ++ LA D+VREG SL KAL+QT LFPPMM HMIASGE+SGEL+SML RAADN Sbjct: 301 MSNDYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMIASGERSGELDSMLERAADN 360 Query: 358 QDQSFESTVNIALGIFTPALIALMAGLVLFIVMATLMPMLEMNNLMS 404 QD+ F S + +ALG+F P L+ MA +VLFIV+A L P+L++N LMS Sbjct: 361 QDREFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPILQLNTLMS 407
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 29.9 bits (67), Expect = 0.020 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 11/57 (19%) Query: 1 MVDILDTAPSYRRLPFSFANRFKMVLEVEHPERPPVLYYVEPLNAQALVEVRRVLKQ 57 +D L P ++ +PF A RF+ V P V +Y L+A V RVL Sbjct: 245 DMDALMATPLWQAMPFVRAGRFQRV--------PAVWFYGATLSAMHFV---RVLDN 290
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 627 bits (1618), Expect = 0.0 Identities = 318/639 (49%), Positives = 431/639 (67%), Gaps = 31/639 (4%) Query: 5 FSKSAWLLAGTLACSSGVLANEFSASFKGTDIQEFINIVGRNLEKTIIVDPSVRGKIDVR 64 FS + + A L + A EFSASFKGTDIQEFIN V +NL KT+I+DPSVRG I VR Sbjct: 10 FSLTLLIFAALLFRPAA--AEEFSASFKGTDIQEFINTVSKNLNKTVIIDPSVRGTITVR 67 Query: 65 SYDVLNEEQYYSFFLNVLEVYGYAVVEMENGVLKVVKSKDSKTSAIPVVSDDT-VKGDNV 123 SYD+LNEEQYY FFL+VL+VYG+AV+ M NGVLKVV+SKD+KT+A+PV SD GD V Sbjct: 68 SYDMLNEEQYYQFFLSVLDVYGFAVINMNNGVLKVVRSKDAKTAAVPVASDAAPGIGDEV 127 Query: 124 ITRVVAVRNVSVRELSPLLRQLIDNAGAGNVVHYDPANIILITGRAAVVNRLAEIIKRVD 183 +TRVV + NV+ R+L+PLLRQL DNAG G+VVHY+P+N++L+TGRAAV+ RL I++RVD Sbjct: 128 VTRVVPLTNVAARDLAPLLRQLNDNAGVGSVVHYEPSNVLLMTGRAAVIKRLLTIVERVD 187 Query: 184 QAGDTEIEVVELGNASAAEMVRIVDALNRTTDAKNTPEFLQPKLVADERTNSILISGDPK 243 AGD + V L ASAA++V++V LN+ T P + +VADERTN++L+SG+P Sbjct: 188 NAGDRSVVTVPLSWASAADVVKLVTELNKDTSKSALPGSMVANVVADERTNAVLVSGEPN 247 Query: 244 VRDRLKRLIRQLDVEMASKGNNRVVYLKYAKAEDLVDVLKGVSDNLQAEKNSGQKGASSQ 303 R R+ +I+QLD + A++GN +V+YLKYAKA DLV+VL G+S +Q+EK K ++ Sbjct: 248 SRQRIIAMIKQLDRQQATQGNTKVIYLKYAKASDLVEVLTGISSTMQSEK-QAAKPVAAL 306 Query: 304 RNDVVIAAHQGTNSLVLTAPPDIMLALQDVITQLDIRRAQVLIEALIVEMAEGDGVNLGV 363 +++I AH TN+L++TA PD+M L+ VI QLDIRR QVL+EA+I E+ + DG+NLG+ Sbjct: 307 DKNIIIKAHGQTNALIVTAAPDVMNDLERVIAQLDIRRPQVLVEAIIAEVQDADGLNLGI 366 Query: 364 QWGNLETGAMIQYSNTGASIGQVMIGLEEAKDTTKTESRWDPDKNQWVDRQYTEKGDYST 423 QW N G M Q++N+G I + G + S Sbjct: 367 QWANKNAG-MTQFTNSGLPISTAIAGANQYNKDGTVSSS--------------------- 404 Query: 424 LASALSKVNGAALSVVMGDWTALISAVSSDSNSNILSSPSITVMDNGEASFIVGEEVPVI 483 LASALS NG A G+W L++A+SS + ++IL++PSI +DN EA+F VG+EVPV+ Sbjct: 405 LASALSSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMEATFNVGQEVPVL 464 Query: 484 TGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGDSVQLNIEQEVSNVL----GANGAVD 539 TGS S DN F TV+RK VGIKLKV PQINEGDSV L IEQEVS+V + + Sbjct: 465 TGSQTTS-GDNIFNTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSTSSDLG 523 Query: 540 VRFAKRQLNTSVIVQDGQMLVLGGLIDERALESESKVPLLGDIPVLGHLFKSTNTQVEKK 599 F R +N +V+V G+ +V+GGL+D+ ++ KVPLLGDIPV+G LF+ST+ +V K+ Sbjct: 524 ATFNTRTVNNAVLVGSGETVVVGGLLDKSVSDTADKVPLLGDIPVIGALFRSTSKKVSKR 583 Query: 600 NLMVFIKPTIIRDGMTADGITQRKYNYIRAEQLYKADQG 638 NLM+FI+PT+IRD + +Y Q + + Sbjct: 584 NLMLFIRPTVIRDRDEYRQASSGQYTAFNDAQSKQRGKE 622
>BCTERIALGSPC#Bacterial general secretion pathway protein C signature. Length = 272 Score = 231 bits (591), Expect = 2e-77 Identities = 85/283 (30%), Positives = 127/283 (44%), Gaps = 33/283 (11%) Query: 31 SALLAGVLVALTGWTLGQVVW---LTQESNTQIVAWRPAPQQNAQGKQGERLNLADLQAI 87 +L +L+ L L + W L + V PA Q Q L Sbjct: 15 RRILFYLLMLLFCQQLAMIFWRIGLPDNAPVSSVQITPA-QARQQP--------VTLNDF 65 Query: 88 NLFGVYNENKPKPVVSQPVVQDAPKTRLNLVLVGAVASSNPQTSLAVIANRGQQATYGVG 147 LFGV E + + + P + LNL L G +A + S+A+I+ +Q + GV Sbjct: 66 TLFGVSPEKNKAGALDASQMSNLPPSTLNLSLTGVMAGDDDSRSIAIISKDNEQFSRGVN 125 Query: 148 EEIEGTRAKLKAVLVDRVIIDNEGRDETLMLEGVEYKKLSESTPRVIPSSTIAKNNPPDT 207 EE+ G AK+ ++ DRV++ +GR E L L E + P Sbjct: 126 EEVPGYNAKIVSIRPDRVVLQYQGRYEVLGLYSQEDS---------------GSDGVPG- 169 Query: 208 DEQLAQIREEITA-DPQKIFQYVRLSQVKQEDKVIGYRVSPGKSPQLFEAVGLQDGDIAV 266 AQ+ E++ + YV S + ++K+ GYR++PG F VGLQD D+AV Sbjct: 170 ----AQVNEQLQQRASTTMSDYVSFSPIMNDNKLQGYRLNPGPKSDSFYRVGLQDNDMAV 225 Query: 267 QLNGNDLTDPAAMGKIFNAVSELTELNLTVERDGQQHDIYIQF 309 LNG DL D K ++++ LTVERDGQ+ DIY++F Sbjct: 226 ALNGLDLRDAEQAKKAMERMADVHNFTLTVERDGQRQDIYMEF 268
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 833 bits (2154), Expect = 0.0 Identities = 323/1033 (31%), Positives = 535/1033 (51%), Gaps = 30/1033 (2%) Query: 5 DVFIKRPVLAVSISFLIALLGLQAVFKMQVREYPEMTNTVVTVTTSYYGASADLIQGFIT 64 + FI+RP+ A ++ ++ + G A+ ++ V +YP + V+V+ +Y GA A +Q +T Sbjct: 3 NFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVT 62 Query: 65 QPLEQAVAQADNIDYMTSQSV-LGKSTITVNMKLNTDPNAALADILAKTNSVRSQLPKEA 123 Q +EQ + DN+ YM+S S G TIT+ + TDP+ A + K LP+E Sbjct: 63 QVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEV 122 Query: 124 EDPTVTMSTGSTTAVLYIGFTSDELSSSQ--ITDYLERVINPQLFTINGVSKVDLYGGLK 181 + +++ S++ ++ GF SD ++Q I+DY+ + L +NGV V L+G + Sbjct: 123 QQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA-Q 181 Query: 182 YALRVWLDPAKMGALRLTATDVMGVLNANNYQSATGQVTGEFVL------YNGSADTQVS 235 YA+R+WLD + +LT DV+ L N Q A GQ+ G L + A T+ Sbjct: 182 YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFK 241 Query: 236 NVQELENLVVKSG-DGEVIRLGDIAKVTLEKSHDVYRASANGQEAVVAAINAAPSANPIN 294 N +E + ++ DG V+RL D+A+V L + A NG+ A I A AN ++ Sbjct: 242 NPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALD 301 Query: 295 IAADVLKLLPQLERNLPSNIKMNVMYDSTIAINESIHEVVKTIVEAAVIVLVVITLFLGS 354 A + L +L+ P +K+ YD+T + SIHEVVKT+ EA ++V +V+ LFL + Sbjct: 302 TAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQN 361 Query: 355 FRAVIIPIVTIPLSLIGVAMVMQAMGFSWNLMTLLAMVLAIGLVVDDAIVVLENVDRHIK 414 RA +IP + +P+ L+G ++ A G+S N +T+ MVLAIGL+VDDAIVV+ENV+R + Sbjct: 362 MRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMM 421 Query: 415 EGESPFRAAII-GTREIAVPVIAMTLTLGAVYAPIALMGGITGSLFKEFALTLAGSVFVS 473 E + P + A +I ++ + + L AV+ P+A GG TG+++++F++T+ ++ +S Sbjct: 422 EDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALS 481 Query: 474 GIIALTLSPMMCSKMLKA-----HEKPSKFEEKVHHVLDGMTNRYEKMLKAVMDHRPVVI 528 ++AL L+P +C+ +LK HE F + D N Y + ++ + Sbjct: 482 VLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYL 541 Query: 529 GFALIVFGTLPVLFKFIPSELAPSEDKGVVMLMGTGPSNANLDYLQNTMNDVNKILSDQP 588 ++ + VLF +PS P ED+GV + M P+ A + Q ++ V Sbjct: 542 LIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKNE 601 Query: 589 EVEFAQVFT------GVPNSNQAFGLATLKPWSQR---EASQAEITKRVGGLVSNVPGMA 639 + VFT N +LKPW +R E S + R + + Sbjct: 602 KANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDGF 661 Query: 640 VTAFQMPE--LPGAGSGLPIQFVITTPNSFESLYTIASDILTEVTSSPLFVYS-DLDLKY 696 V F MP G +G + + ++L + +L P + S + Sbjct: 662 VIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGLE 721 Query: 697 DSATMKIKIDKDKAGAYGVTMQDIGITLGTMMADGYVNRIDLNGRSYEVIPQVERKWRLN 756 D+A K+++D++KA A GV++ DI T+ T + YVN GR ++ Q + K+R+ Sbjct: 722 DTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRML 781 Query: 757 PESMKNYYVRAADGKAVPLGSLITIDVIAEPRSLPHFNQLNSATVGAVPSPGTAMGDAIN 816 PE + YVR+A+G+ VP + T + L +N L S + +PGT+ GDA+ Sbjct: 782 PEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAMA 841 Query: 817 WFENIASSKLPTGYNHDYMGEARQFVTEGSALYATFGLALAIIFLVLAIQFESIRDPIVI 876 EN+AS KLP G +D+ G + Q G+ A ++ ++FL LA +ES P+ + Sbjct: 842 LMENLAS-KLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSV 900 Query: 877 MVSVPLAICGALIALAWGLATMNIYSQVGLITLVGLITKHGILICEVAKEEQLHNKRSRI 936 M+ VPL I G L+A ++Y VGL+T +GL K+ ILI E AK+ + + Sbjct: 901 MLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVV 960 Query: 937 DAVMEAAKVRLRPILMTTAAMIAGLIPLMYATGAGAAQRFSIGIVIVAGLAIGTLFTLFV 996 +A + A ++RLRPILMT+ A I G++PL + GAG+ + ++GI ++ G+ TL +F Sbjct: 961 EATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFF 1020 Query: 997 LPVIYSYLAEKHK 1009 +PV + + K Sbjct: 1021 VPVFFVVIRRCFK 1033
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 64.1 bits (156), Expect = 2e-13 Identities = 46/190 (24%), Positives = 77/190 (40%), Gaps = 21/190 (11%) Query: 101 DSDVEKANLKSSEAKLPAAEAKYKRYQGLFKKGSISKEAYDEAGANYYSLKADIESLKAS 160 + V K+ L+ E+++ +A+ +Y+ LFK + K + N L ++ + Sbjct: 267 ELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLR--QTTDNIGLLTLELAKNEER 324 Query: 161 IARREIKAPFSGVIGIRNVY-LGQYLQAGS---DIVRLEDTSVMRLRFTVPQNDISRINL 216 I+AP S + V+ G + IV +DT + V DI IN+ Sbjct: 325 QQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTAL--VQNKDIGFINV 382 Query: 217 GQEVDIFVDAYPQN---PFKGSITAIEP--AVNIQSGL-----IQIQADIPNSDGK---L 263 GQ I V+A+P G + I + + GL I I+ + ++ K L Sbjct: 383 GQNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVIISIEENCLSTGNKNIPL 442 Query: 264 RSGMFARANI 273 SGM A I Sbjct: 443 SSGMAVTAEI 452 Score = 42.5 bits (100), Expect = 2e-06 Identities = 15/59 (25%), Positives = 30/59 (50%) Query: 71 TIANETSGVIKQIRFESGTQVKEGQPLVLLDSDVEKANLKSSEAKLPAAEAKYKRYQGL 129 I + ++K+I + G V++G L+ L + +A+ +++ L A + RYQ L Sbjct: 98 EIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQIL 156
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 68.5 bits (167), Expect = 1e-16 Identities = 21/73 (28%), Positives = 34/73 (46%) Query: 2 SSEEQNDKQQQILAAAEKLIAESGFQGLSMSKLAKEAGVAAGTIYRYFDDKEHLLDELRL 61 + +E + +Q IL A +L ++ G S+ ++AK AGV G IY +F DK L E+ Sbjct: 5 TKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWE 64 Query: 62 RITQRVATAIQAN 74 + Sbjct: 65 LSESNIGELELEY 77
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 27.2 bits (60), Expect = 0.031 Identities = 10/37 (27%), Positives = 18/37 (48%) Query: 22 RMISVLFAALTFSTAAMATSTDHDAIAERIKPVGDVY 58 R++ ++ AAL FS ++ A RIK + + Sbjct: 2 RVLRIIAAALVFSALPFLSTPPAQADTSRIKDIASLQ 38
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 604 bits (1558), Expect = 0.0 Identities = 169/678 (24%), Positives = 292/678 (43%), Gaps = 73/678 (10%) Query: 9 RYRNIGICAHVDAGKTTTTERILFYTGLSHKIGEVHDGAATMDWMEQEQERGITITSAAT 68 + NIG+ AHVDAGKTT TE +L+ +G ++G V G D E++RGITI + T Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 69 TTFWRGMEAQFQDHRVNIIDTPGHVDFTIEVERSLRVLDGAVVVFCGSSGVEPQSETVWR 128 + W ++ +VNIIDTPGH+DF EV RSL VLDGA+++ GV+ Q+ ++ Sbjct: 62 SFQW-------ENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFH 114 Query: 129 QADKYHVPRMVFVNKMDRAGADFLRVVDQIKNRLGANPVPIQLNVGAEEDFKGVIDLIKM 188 K +P + F+NK+D+ G D V IK +L A V Q Sbjct: 115 ALRKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQ------------------ 156 Query: 189 KMINWNEADQGMTFTYEEIPADMIELAEEWRNNLVEAAAEASEELMDKYLEEGELTEAEI 248 Y + +E+W + E +++L++KY+ L E+ Sbjct: 157 -----------KVELYPNMCVTNFTESEQW-----DTVIEGNDDLLEKYMSGKSLEALEL 200 Query: 249 KQALRARTLNNEIVLATCGSAFKNKGVQAVLDAVIEYLPSPIDVPAIKGIDENDNEVERH 308 +Q R N + GSA N G+ +++ + S Sbjct: 201 EQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSSTH----------------- 243 Query: 309 ADDNEPFSALAFKIATDPFVGTLTFIRVYSGVVNTGDAVYNSVKQKKERFGRIVQMHANK 368 FKI L +IR+YSGV++ D+V S K+K + + + Sbjct: 244 -RGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKI-KITEMYTSINGE 301 Query: 369 REEIKEVRAGDIAAAIG----LKDVTTGDTLCNSDHKVILERMEFPEPVIQIAVEPRSKA 424 +I + +G+I L V GDT ER+E P P++Q VEP Sbjct: 302 LCKIDKAYSGEIVILQNEFLKLNSV-LGDTKLLPQR----ERIENPLPLLQTTVEPSKPQ 356 Query: 425 DQEKMGIALGKLAAEDPSFRVETDAETGQTLISGMGELHLDIIVDRMKREFSVDCNVGKP 484 +E + AL +++ DP R D+ T + ++S +G++ +++ ++ ++ V+ + +P Sbjct: 357 QREMLLDALLEISDSDPLLRYYVDSATHEIILSFLGKVQMEVTCALLQEKYHVEIEIKEP 416 Query: 485 QVAYRETIRGKSEVEGKFVRQSGGRGQYGHVWIKLEPSEPGAGFVFVDEVVGGVIPKEYI 544 V Y E K+ E + + + + + P G+G + V G + + + Sbjct: 417 TVIYMERPLKKA--EYTIHIEVPPNPFWASIGLSVSPLPLGSGMQYESSVSLGYLNQSFQ 474 Query: 545 SSVAKGIEEQMNSGVLAGYPVLDIKATLFDGSYHDVDSSEMAFKIAGSMAFKKGALEAQP 604 ++V +GI G L G+ V D K G Y+ S+ F++ + ++ +A Sbjct: 475 NAVMEGIRYGCEQG-LYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQVLKKAGT 533 Query: 605 VILEPMMKVEVTTPEDWMGDVVGDLNRRRGIIEGMDEGVAGLKIIRAQVPLSEMFGYATD 664 +LEP + ++ P++++ D + I + I+ ++P + Y +D Sbjct: 534 ELLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDT-QLKNNEVILSGEIPARCIQEYRSD 592 Query: 665 LRSATQGRASYSMEFFEY 682 L T GR+ E Y Sbjct: 593 LTFFTNGRSVCLTELKGY 610
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 84.1 bits (208), Expect = 1e-19 Identities = 61/198 (30%), Positives = 91/198 (45%), Gaps = 13/198 (6%) Query: 13 VNVGTIGHVDHGKTTLTAAI------CTTLAKVYGGAARDFASIDNAPEERERGITISTS 66 +N+G + HVD GKTTLT ++ T L V G R DN ER+RGITI T Sbjct: 4 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTR----TDNTLLERQRGITIQTG 59 Query: 67 HVEYDTPARHYAHVDCPGHADYVKNMITGAAQMDGGILVVAATDGPMPQTREHILLGRQV 126 + +D PGH D++ + + +DG IL+++A DG QTR R++ Sbjct: 60 ITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKM 119 Query: 127 GIPYIIVFMNKCDMVDDEELLELVEMEVRELLSEYDFPGDDLPVIQGSALGALNGEEQWE 186 GIP I F+NK D + L V +++E LS + + + EQW+ Sbjct: 120 GIP-TIFFINKIDQNGID--LSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWD 176 Query: 187 AKIIELAEALDTYIPEPE 204 I + L+ Y+ Sbjct: 177 TVIEGNDDLLEKYMSGKS 194
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 34.8 bits (80), Expect = 5e-05 Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 10/109 (9%) Query: 39 HLADKEYHESIDEMKHADHLVERILFLEGIPN--LQDLGKLM------IGEDTQEMLECD 90 H +E ++ E D + ER+L + G P +++ + EM++ Sbjct: 47 HEKFEELYDHAAE--TVDTIAERLLAIGGQPVATVKEYTEHASITDGGNETSASEMVQAL 104 Query: 91 LKLEMAAIPDLKAAIAYAEDVHDYVSRDLFQDILEDEEEHVDWLETQLG 139 + + K I AE+ D + DLF ++E+ E+ V L + LG Sbjct: 105 VNDYKQISSESKFVIGLAEENQDNATADLFVGLIEEVEKQVWMLSSYLG 153
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 177 bits (451), Expect = 2e-55 Identities = 80/346 (23%), Positives = 143/346 (41%), Gaps = 38/346 (10%) Query: 1 MNILVTGGSGYIGSHTCIQMIEAGMTPIILDNL--YNSKLLVLDRIEQVTGVRPTFYQGD 58 M LVTG +G+IG H +++EAG + +DNL Y L R+E + F++ D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 59 IRDSEILQHVFAQHDIQGVIHFAGLKAVGESVEKPLMYYDNNVSGTLNLVREMDKAGVKS 118 + D E + +FA + V AV S+E P Y D+N++G LN++ ++ Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 119 LIFSSSATVYGDPASVPIRENFPTS-ATNPYGRSKLMVEECLTDFHKANPDWSITLLRYF 177 L+++SS++VYG +P + + Y +K E + T LR+F Sbjct: 121 LLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSH-LYGLPATGLRFF 179 Query: 178 NPVGAHESGLLGEDPQGIPNNLLP-FVAQVAVGRREKLGVFGDDYPTPDGTGVRDYIHVI 236 G P G P+ L F + G+ V+ G RD+ ++ Sbjct: 180 TVYG----------PWGRPDMALFKFTKAMLEGKSID--VYN------YGKMKRDFTYID 221 Query: 237 DLADGHLAALNKVGQ---------------QAGLHIFNLGTGQGNSVLEMVAAFEKAAQR 281 D+A+ + + + A ++N+G +++ + A E A Sbjct: 222 DIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGI 281 Query: 282 PIPYEIKPRRAGDIAECWADPAYAEQVLGWKATRSLETMVVDTWRW 327 + P + GD+ E AD +V+G+ +++ V + W Sbjct: 282 EAKKNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNW 327
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 187 bits (477), Expect = 4e-54 Identities = 79/319 (24%), Positives = 141/319 (44%), Gaps = 35/319 (10%) Query: 222 QQAVAGLIGSGKGQSVVVTPQAGVITVRAFPDEIREVRQFLGISQERMQRQVILEAKILE 281 +QA + K + Q + V A PD + ++ + + + + QV++EA I E Sbjct: 297 KQAAKPVAALDKNIIIKAHGQTNALIVTAAPDVMNDLERVIA-QLDIRRPQVLVEAIIAE 355 Query: 282 VTLSDGYQQGINWSNISASIGN------------SGSIVVNRPG---STVLPGLDAIGSL 326 V +DG GI W+N +A + +G+ N+ G S++ L + + Sbjct: 356 VQDADGLNLGIQWANKNAGMTQFTNSGLPISTAIAGANQYNKDGTVSSSLASALSSFNGI 415 Query: 327 LGGQTNVTISDGSFEAVLSFMSTQGDLNVLSSPRVTASNNQKAVIKVGNDQYYVTALSSN 386 G G++ +L+ +S+ ++L++P + +N +A VG + +T S Sbjct: 416 AAG-----FYQGNWAMLLTALSSSTKNDILATPSIVTLDNMEATFNVGQEVPVLTG--SQ 468 Query: 387 VGNDDKSKAVPEVTLTPFFSGISLDVTPQIDDKGNVFLHVHPAVIEVEEETKQLNLGGDF 446 + D E GI L V PQI++ +V L + V V + + Sbjct: 469 TTSGDNIFNTVERKTV----GIKLKVKPQINEGDSVLLEIEQEVSSVADAASSTSSDLG- 523 Query: 447 QNVTLPLAKSSIRESDSVIRARDGDVVVIGGLMKSNTIERVSKVPFLGDIPALGHLFRNT 506 A + R ++ + G+ VV+GGL+ + + KVP LGDIP +G LFR+T Sbjct: 524 -------ATFNTRTVNNAVLVGSGETVVVGGLLDKSVSDTADKVPLLGDIPVIGALFRST 576 Query: 507 SNLTQKTELVILLKPTVVG 525 S K L++ ++PTV+ Sbjct: 577 SKKVSKRNLMLFIRPTVIR 595 Score = 36.1 bits (83), Expect = 4e-04 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 6/81 (7%) Query: 77 GVEARQFFTSLIKGTEFSVAVHPDVTGRITLNVSDVT----LDDILLIVQDMYGYDVIKT 132 G + ++F ++ K +V + P V G IT+ D+ L V D+YG+ VI Sbjct: 36 GTDIQEFINTVSKNLNKTVIIDPSVRGTITVRSYDMLNEEQYYQFFLSVLDVYGFAVINM 95 Query: 133 GK-VIQVYPAGL-RTVTIPVD 151 V++V + +T +PV Sbjct: 96 NNGVLKVVRSKDAKTAAVPVA 116
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 289 bits (742), Expect = 6e-97 Identities = 110/406 (27%), Positives = 195/406 (48%), Gaps = 2/406 (0%) Query: 1 MATFHYQGRTLDGNKANGQIDAVTSEAAAEQLMNRGIIPVSI--TQGKTGSGLDFDLNAL 58 MA +HYQ G K G +A ++ A + L RG++P+S+ +G L+ Sbjct: 1 MAQYHYQALDAQGKKCRGTQEADSARQARQLLRERGLVPLSVDENRGDQQKSGSTGLSLR 60 Query: 59 FAPAVPLEILVLFCRQLYSLTKAGVPLLRSMRGLVQNCENKQLKAALEEVVAELTNGRSL 118 + L L RQL +L A +PL ++ + + E L + V +++ G SL Sbjct: 61 RKIRLSTSDLALLTRQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSL 120 Query: 119 SASMQLHSKVFSPLFVSMIHVGENTGRLDQALLQLANYYEQELETRKRIKTAMRYPTFVI 178 + +M+ F L+ +M+ GE +G LD L +LA+Y EQ + R RI+ AM YP + Sbjct: 121 ADAMKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVLT 180 Query: 179 SFIVVAMFILNVKVIPQFASMFSRFGVDLPLPTRILIGMSEFFVNYWMLLAGFIVGLIFG 238 + + IL V+P+ F LPL TR+L+GMS+ + + ++ Sbjct: 181 VVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLALLAGFMA 240 Query: 239 FKAWVATADGRERWDKWRLKLPVVGGVVNRAQLSRFSRTFALMLKAGVPLNQSLALSAEA 298 F+ + R + + L LP++G + +R++RT +++ + VPL Q++ +S + Sbjct: 241 FRVMLRQEKRRVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAMRISGDV 300 Query: 299 MGNRYLELKILKMKADIEAGSQVSVTAINSGIFTPLVIQMISVGEETGRIDELLMEVADF 358 M N Y ++ + G + + +F P++ MI+ GE +G +D +L AD Sbjct: 301 MSNDYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMIASGERSGELDSMLERAADN 360 Query: 359 YDREVDYDLKTLTARIEPILLVIVAGMVLVLALGIFLPMWGMLDVI 404 DRE + EP+L+V +A +VL + L I P+ + ++ Sbjct: 361 QDREFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPILQLNTLM 406
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 39.5 bits (92), Expect = 2e-06 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 4/48 (8%) Query: 5 QNGFSLVELVVVIVVVGLLAVAALPRFLDVTDAAK----KASIEGVAG 48 Q GF+L+E++VVIV++G+LA +P + + A + I + Sbjct: 7 QRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALEN 54
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 52.6 bits (126), Expect = 2e-11 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 4/53 (7%) Query: 1 MKRQGGFTLIELVVVIVILGILAVTAAPRFLNLQDDARS----SALQGLKGAM 49 +Q GFTL+E++VVIVI+G+LA P + ++ A S + L+ A+ Sbjct: 4 TDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENAL 56
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 38.7 bits (90), Expect = 2e-06 Identities = 16/82 (19%), Positives = 33/82 (40%), Gaps = 5/82 (6%) Query: 4 RAQAGFTLVELIVVILLLSIVSAYAASRYIGT-GSFSAYAAQEQAISIIRQLQVYRMQSN 62 Q GFTL+E++VVI+++ ++++ +G A +++ L +Y++ Sbjct: 5 DKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKLD-- 62 Query: 63 TTNSANPNFELTASGGCLGSTA 84 N P T Sbjct: 63 --NHHYPTTNQGLESLVEAPTL 82
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 29.9 bits (67), Expect = 0.004 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 8/55 (14%) Query: 3 KQQGMTLIESIVAMVLIAVAMVTLTSLLFPNVKNSAAPHYQTRAIALGQGFMSQI 57 +Q+G TL+E ++ ++L+ V+ + + +SAA QT A F +Q+ Sbjct: 2 RQRGFTLLEMMLILLLMGVSAGMVLLAFPASRDDSAA---QTLA-----RFEAQL 48
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 34.2 bits (78), Expect = 2e-04 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 7/58 (12%) Query: 1 MSSRGFTLVEMVLTLIVGSILVLGIAGFVELGTKGYADSVD---RQRIQTQAQFVLEK 55 M RGFTL+EM+L L++ + AG V L D R + Q +FV ++ Sbjct: 1 MRQRGFTLLEMMLILLLMGVS----AGMVLLAFPASRDDSAAQTLARFEAQLRFVQQR 54
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 566 bits (1461), Expect = 0.0 Identities = 322/347 (92%), Positives = 333/347 (95%) Query: 1 MLKKLRGMFSNDLSIDLGTANTLIYVKGQGIVLDEPSVVAIRQDRAGSAKSVAAVGHAAK 60 MLKK RGMFSNDLSIDLGTANTLIYVKGQGIVL+EPSVVAIRQDRAGS KSVAAVGH AK Sbjct: 1 MLKKFRGMFSNDLSIDLGTANTLIYVKGQGIVLNEPSVVAIRQDRAGSPKSVAAVGHDAK 60 Query: 61 QMLGRTPGNISAIRPMKDGVIADFNVTEKMLQHFIKQVHDNSILKPSPRVLVCVPCGSTQ 120 QMLGRTPGNI+AIRPMKDGVIADF VTEKMLQHFIKQVH NS ++PSPRVLVCVP G+TQ Sbjct: 61 QMLGRTPGNIAAIRPMKDGVIADFFVTEKMLQHFIKQVHSNSFMRPSPRVLVCVPVGATQ 120 Query: 121 VERRAIRESALGAGAREVFLIDEPMAAAIGAGLRVSEPTGSMVVDIGGGTTEVAVISLNG 180 VERRAIRESA GAGAREVFLI+EPMAAAIGAGL VSE TGSMVVDIGGGTTEVAVISLNG Sbjct: 121 VERRAIRESAQGAGAREVFLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNG 180 Query: 181 VVYSSSVRIGGDRFDEAIINYVRRNYGSLIGEATAEKIKHEIGSAYPGDEVHEIEVRGRN 240 VVYSSSVRIGGDRFDEAIINYVRRNYGSLIGEATAE+IKHEIGSAYPGDEV EIEVRGRN Sbjct: 181 VVYSSSVRIGGDRFDEAIINYVRRNYGSLIGEATAERIKHEIGSAYPGDEVREIEVRGRN 240 Query: 241 LAEGVPRSFTLNSNEILEALQEPLSGIVSAVMVALEQCPPELASDISENGMVLTGGGALL 300 LAEGVPR FTLNSNEILEALQEPL+GIVSAVMVALEQCPPELASDISE GMVLTGGGALL Sbjct: 241 LAEGVPRGFTLNSNEILEALQEPLTGIVSAVMVALEQCPPELASDISERGMVLTGGGALL 300 Query: 301 KDLDRLLTEETGIPVVIAEDPLTCVARGGGKALEMIDMHGGDLFSEE 347 ++LDRLL EETGIPVV+AEDPLTCVARGGGKALEMIDMHGGDLFSEE Sbjct: 301 RNLDRLLMEETGIPVVVAEDPLTCVARGGGKALEMIDMHGGDLFSEE 347
>AUTOINDCRSYN#Autoinducer synthesis protein signature. Length = 216 Score = 28.7 bits (64), Expect = 0.049 Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 1/44 (2%) Query: 190 TGPFTVIDTFTPQL-YIQCRNPNYWDSANLEVDCLRVPQIANND 232 P + TF P I NY +S+ VD R I N+ Sbjct: 73 KYPNMITGTFFPYFKEINIPEGNYLESSRFFVDKSRAKDILGNE 116
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 96.1 bits (239), Expect = 1e-22 Identities = 36/135 (26%), Positives = 65/135 (48%), Gaps = 2/135 (1%) Query: 722 GPLLIVADDEPVNLRVLESFLRIEGYRVQTASDGPDTLELIEHEKPALLLLDIMMPGMSG 781 G ++VADD+ VL L GY V+ S+ I L++ D++MP + Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 782 YQVCHQLRQQYDMAELPIIMLTALSQSEDRVRGFEAGANDYLTKPFNKQELAARIKAHLM 841 + + ++++ LP+++++A + ++ E GA DYL KPF+ EL I L Sbjct: 63 FDLLPRIKKARPD--LPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 842 ASKAEARRLENNRLE 856 K +LE++ + Sbjct: 121 EPKRRPSKLEDDSQD 135
>FLGMOTORFLIM#Flagellar motor switch protein FliM signature. Length = 344 Score = 29.5 bits (66), Expect = 0.023 Identities = 26/143 (18%), Positives = 46/143 (32%), Gaps = 19/143 (13%) Query: 172 FAKHTLTATFNDLDSVRELFAAN-----KGEIACIIVEPVAGNMNCI--PPVEGFHEGLR 224 FA+ T T+ L S+ + A+ E I P + I P++G + Sbjct: 62 FARLTTTSLSAQLRSMVHVHVASVDQLTYEEFIRSI--PTPSTLAVITMDPLKGN--AVL 117 Query: 225 EICDQEGALLIFDEVMTGFRVALGGAQAHYNIKPDLTTLGKVIGGGMPVGAFGGRKEVMQ 284 E+ D I D + GG ++ DLT + + G+ V +E Sbjct: 118 EV-DPSITFSIIDRLF-------GGTGQAAKVQRDLTDIENSVMEGVIVRILANVRESWT 169 Query: 285 YIAPTGPVYQAGTLSGNPVAMAA 307 + P + + Sbjct: 170 QVIDLRPRLGQIETNPQFAQIVP 192
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 33.3 bits (76), Expect = 0.002 Identities = 16/121 (13%), Positives = 41/121 (33%), Gaps = 4/121 (3%) Query: 117 RLQRAKAMLEVKLKEFKAAQSLKSRGLQGEVA--FATAEAALVDAKANLSNVETELSNTE 174 + +E ++ K L ++ + E+ + L+ E + Sbjct: 270 VYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASV 329 Query: 175 VRAPFDGI-LDSRFVEVGDFVGIGDPVATVI-DLQKLVIEADVSERHVQHLAAKQMAQVR 232 +RAP + G V + + ++ + L + A V + + + Q A ++ Sbjct: 330 IRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIK 389 Query: 233 L 233 + Sbjct: 390 V 390
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 509 bits (1312), Expect = e-166 Identities = 223/1048 (21%), Positives = 440/1048 (41%), Gaps = 67/1048 (6%) Query: 9 LSRSRTMMTLLVMILLAGIGTYMTIPKESSPDITIPIIYVSVGHQGISPTDAERLLVRPI 68 + R L +++++AG + +P P I P + VS + G + + + I Sbjct: 6 IRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVTQVI 65 Query: 69 EQELRSIEGVKEMTSTA-SEGHASVMLEFTVGVDLAKAMADVRDAVDLAKPKLPADSDEP 127 EQ + I+ + M+ST+ S G ++ L F G D A V++ + LA P LP + + Sbjct: 66 EQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEVQQQ 125 Query: 128 TVNEVTLASEEPVLSVVLYGTLPERTIVQ----VARQLRDKLESYRQVLEVDIAGDREDI 183 ++ +S ++ P T VA ++D L V +V + G + Sbjct: 126 GISVEK-SSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG-AQYA 183 Query: 184 VEIIVDPLLMESYGLDQGDIYNLIALNNRVVAAGFVDTG------YGRFSVKVPSVFDSL 237 + I +D L+ Y L D+ N + + N +AAG + S+ + F + Sbjct: 184 MRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFKNP 243 Query: 238 KDVLELPIKVDGK-QVITFADVATVRRAFRDPESFARLDGKPAVVLDVKKRAGENIIETV 296 ++ ++ ++V+ V+ DVA V + AR++GKPA L +K G N ++T Sbjct: 244 EEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTA 303 Query: 297 ELVKRVIEEGQKRADWPDNLLVKYTWDQSEDVELMLNDLQNNILSAIILVVIVIIAILG- 355 + +K + E + +P + V Y +D + V+L ++++ + AI+LV +V+ L Sbjct: 304 KAIKAKLAE--LQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQN 361 Query: 356 VRTALLVGISIPGSFLTGLLVLAVFGLTVNIVVLFSLIMAVGMLVDGAIVVTEFADRRMQ 415 +R L+ I++P L +LA FG ++N + +F +++A+G+LVD AIVV E +R M Sbjct: 362 MRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMM 421 Query: 416 E-GVERKQAYRDAAKRMAWPITASTATTLAAFAPLLFWPDITGEFMKYLPLTLIATLAAS 474 E + K+A + ++ + A F P+ F+ TG + +T+++ +A S Sbjct: 422 EDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALS 481 Query: 475 LIMALLFVPVLGGLIGKPQ-NVSSENQRRMVALHNGEFDKATGITKLYYHTLAIAVRHPL 533 +++AL+ P L + KP EN+ N FD + Y +++ + Sbjct: 482 VLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHS---VNHYTNSVGKILGSTG 538 Query: 534 KILLSAILMAGGVGFAYNKAGLGAEFFPEVDPPFFTVKVRSYGDLSIFEKDVVMRNIEQV 593 + LL L+ G+ + + L + F PE D F ++ + V+ + Sbjct: 539 RYLLIYALIVAGMVVLFLR--LPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDY 596 Query: 594 MLGH--DEFESVYTRTGGD-----DEIGQIQITPVDWQYRRKVKE----IIDELKQTTST 642 L + ESV+T G G ++ W+ R + +I K Sbjct: 597 YLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKM---E 653 Query: 643 FSGVEIEYKFPDAGPPV---------EHDLVIEMSSRIPEHLDDAAKVVRHWADNNPALT 693 + + P P + + +L+ + +++ A + +L Sbjct: 654 LGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLV 713 Query: 694 NLSDTSSKEGIDWQIDIRRDDASRFAADATLVGNTVQFVTNGLKIGDYLPDDANEEVDIL 753 ++ ++ +++++ ++ A + + T+ G + D++ + Sbjct: 714 SVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRG--RVKKLY 771 Query: 754 VRYPEEKR-DIGRFDQLRVKTPAG-LVPITNFAQIKPEPKQDTIKRIDGQRVINVMADMV 811 V+ + R D+L V++ G +VP + F ++R +G + + + Sbjct: 772 VQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAA 831 Query: 812 EGYNLALELPKIEQALSELGLPEGVEFRIRGQNEEQEHSSAFLQNAFMIALAVMALILIT 871 G + + +E S+ LP G+ + G + ++ S I+ V+ L L Sbjct: 832 PGTSSGDAMALMENLASK--LPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAA 889 Query: 872 QFNSFYQAFLILSAVLFSTVGVFAGLLIFQKPFGVIMSGIGVIALAGIVVNNNIVLIDTY 931 + S+ ++ V VGV +F + V +G++ G+ N I++++ Sbjct: 890 LYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVY-FMVGLLTTIGLSAKNAILIVEFA 948 Query: 932 NQLRQR-GLDKEEAILRTGVQRLRPVMLTTVTTILGLLPMVLEMNIDLINQKIEFGAPST 990 L ++ G EA L RLRP+++T++ ILG+LP+ I GA S Sbjct: 949 KDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLA-----------ISNGAGSG 997 Query: 991 QWWSQLATAVAGGLAFATVLTLVLTPCL 1018 + + V GG+ AT+L + P Sbjct: 998 AQNA-VGIGVMGGMVSATLLAIFFVPVF 1024
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 31.2 bits (70), Expect = 0.001 Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 5/93 (5%) Query: 7 TITPSPESQQEALKIARATQKPGQTKEQTKLIAQGIEKGIALYKKQQKEKHRQADKMRKK 66 T T + S+QE+ + + Q +T Q + +A+ K Q E + + ++ Sbjct: 1037 TETVAENSKQESKTVEKNEQDATETTAQNREVAKE-AKSNVKANTQTNEVAQSGSETKET 1095 Query: 67 QLRDKSKEQQSSTED----EIFDTQATPPTPSQ 95 Q + + E+ E TQ P SQ Sbjct: 1096 QTTETKETATVEKEEKAKVETEKTQEVPKVTSQ 1128
>FLAGELLIN#Flagellin signature. Length = 507 Score = 203 bits (517), Expect = 8e-63 Identities = 93/297 (31%), Positives = 140/297 (47%), Gaps = 2/297 (0%) Query: 2 AITVNTNVAALVAQRHLTSATDMLNQSLERLSSGKRINSAKDDAAGLQISNRLQSQMRGL 61 A +NTN +L+ Q +L + L+ ++ERLSSG RINSAKDDAAG I+NR S ++GL Sbjct: 1 AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60 Query: 62 DIAVRNANDGISIMQTAEGAMNETTNILQRMRDLSLQSANGSNSYAERIALQEEMTALND 121 A RNANDGISI QT EGA+NE N LQR+R+LS+Q+ NG+NS ++ ++Q+E+ + Sbjct: 61 TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120 Query: 122 ELNRIAETTSFGGRKLLNGSFGSAAFQIGAASGEAVQVQLKSMRSDGIDMGGFSYIANGR 181 E++R++ T F G K+L+ Q+GA GE + + L+ + + + GF+ Sbjct: 121 EIDRVSNQTQFNGVKVLSQDN-QMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKE 179 Query: 182 ARSDWQVKEGANALSMSFTNRFGETETIQINAKAGDDIEELATYINGQTDKVTASVNEEG 241 A N + +N+ A T + Sbjct: 180 ATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTD 239 Query: 242 QLQLFMAGEETSGTLSFSGDL-ASELGLQLKGYDAVDNIDITSVGGAQQAVAVLDTA 297 + A + T S +G A + +KG D D V D Sbjct: 240 DAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGN 296 Score = 126 bits (318), Expect = 2e-34 Identities = 58/212 (27%), Positives = 87/212 (41%), Gaps = 19/212 (8%) Query: 184 SDWQVKEGANALSMSFTNRFGETETIQINAKAGDDIEEL-ATYINGQTDKVTASVNEEGQ 242 + +V N ++ T ++A + + + +NGQ + NE + Sbjct: 295 GNGKVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESAK 354 Query: 243 LQLFMAGEETSGTLSFSGDLASELGLQLKGYDAVD------------------NIDITSV 284 L A G + + A + + Sbjct: 355 LSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINEDAAAAK 414 Query: 285 GGAQQAVAVLDTAMKYVDSHRAELGAYQNRFSHAINNLDNIHENLATSNSRIQDTDYAKE 344 +A +D+A+ VD+ R+ LGA QNRF AI NL N NL ++ SRI+D DYA E Sbjct: 415 KSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIEDADYATE 474 Query: 345 TTRMVKQQILQQVSTSILAQAKKGPNLALTLL 376 + M K QILQQ TS+LAQA + P L+LL Sbjct: 475 VSNMSKAQILQQAGTSVLAQANQVPQNVLSLL 506
>FLAGELLIN#Flagellin signature. Length = 507 Score = 192 bits (490), Expect = 6e-59 Identities = 90/297 (30%), Positives = 148/297 (49%), Gaps = 2/297 (0%) Query: 2 AVNVNTNVAAMTAQRYLNNANSAQQTSMERLSSGFKINSAKDDAAGLQISNRLNVQSRGL 61 A +NTN ++ Q LN + S+ +++ERLSSG +INSAKDDAAG I+NR +GL Sbjct: 1 AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60 Query: 62 DVAVRNANDGISIAQTAEGAMNETTNILQRMRDLSLQSANGSNSKSERVAIQEEVTALND 121 A RNANDGISIAQT EGA+NE N LQR+R+LS+Q+ NG+NS S+ +IQ+E+ + Sbjct: 61 TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120 Query: 122 ELNRIAETTSFGGNKLLNGTYGTKAMQIGADNGEAVMLSLKDMRSDNVMMGGVSYQAEEG 181 E++R++ T F G K+L+ +Q+GA++GE + + L+ + ++ + G + + Sbjct: 121 EIDRVSNQTQFNGVKVLSQD-NQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKE 179 Query: 182 KDKNWNVAAGDNDLTIALTDSFGNEQEIEINAKAGDDIEELATYINGQTDLVKASVGEGG 241 ++ N N+ +++N+ A T + Sbjct: 180 ATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTD 239 Query: 242 KLQIFAGNNKVQGEIAFSGSLAGELGLGEGKNVTV-DTIDVTTVQGAQESVAIVDAA 297 + + + + +G+ + G K DT D V ++ D Sbjct: 240 DAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGN 296 Score = 130 bits (327), Expect = 9e-36 Identities = 82/377 (21%), Positives = 137/377 (36%), Gaps = 21/377 (5%) Query: 19 NNANSAQQTSMERLSSGFKINSAKDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTA 78 N Q + ++ G L + ++ + + Sbjct: 132 NGVKVLSQDNQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEATVGDLKSSFKN 191 Query: 79 EGAMNETTNILQRMRDLSLQSANGSNSKSERVAIQEEVTALNDELNRIAETTSFGGNKLL 138 + + R A +++ + V + V A N +L + + Sbjct: 192 VTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTDDAENNTAVDLFK 251 Query: 139 NGTYGTKAMQIGADNGEAVMLSLKDMRSDNVMMGGVSYQAEEGKDKNWNVAAGDNDLTIA 198 + A G D + + G D N V+ N + Sbjct: 252 TTKSTAGTAEAKAIAGAIKGGKEGDTFDYKG--VTFTIDTKTGNDGNGKVSTTINGEKVT 309 Query: 199 LTDSFGNEQEIEINAKAGDDIEEL-ATYINGQTDLVKASVGEGGKLQIFAGNNKVQGEIA 257 LT + ++A + + + +NGQ + E KL NN V+GE Sbjct: 310 LTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSDLEANNAVKGESK 369 Query: 258 FSGSLAGELGLGEGKNVTVD------------------TIDVTTVQGAQESVAIVDAALK 299 + + A G VT+ + +A +D+AL Sbjct: 370 ITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINEDAAAAKKSTANPLASIDSALS 429 Query: 300 YVDSHRAELGAFQNRFNHAISNLDNINENVNASKSRIKDTDFAKETTQLTKTQILSQASS 359 VD+ R+ LGA QNRF+ AI+NL N N+N+++SRI+D D+A E + ++K QIL QA + Sbjct: 430 KVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIEDADYATEVSNMSKAQILQQAGT 489 Query: 360 SILAQAKQAPNSALSLL 376 S+LAQA Q P + LSLL Sbjct: 490 SVLAQANQVPQNVLSLL 506
>FLAGELLIN#Flagellin signature. Length = 507 Score = 182 bits (462), Expect = 6e-55 Identities = 85/297 (28%), Positives = 139/297 (46%), Gaps = 3/297 (1%) Query: 2 AINVNTNVSAMTAQRYLNQAAEGQQKSMERLSSGYKINSAKDDAAGLQISNRLNSQSRGL 61 A +NTN ++ Q LN++ ++ERLSSG +INSAKDDAAG I+NR S +GL Sbjct: 1 AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60 Query: 62 DMAVKNANDGISIAQTAEGAMTETTNILQRMRDLALQSSNGSNSRSERVAIQEEVSALNQ 121 A +NANDGISIAQT EGA+ E N LQR+R+L++Q++NG+NS S+ +IQ+E+ + Sbjct: 61 TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120 Query: 122 ELNRIAETTSFGGNKLLNGTYGSQSFQIGADSGEAVMLSMGNLRSDTDAMGGLSYKSEEG 181 E++R++ T F G K+L+ Q+GA+ GE + + + + + + G + + Sbjct: 121 EIDRVSNQTQFNGVKVLSQD-NQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKE 179 Query: 182 VGADWRVSDNTDFTMSYV-NKQGEEKEITVNAKAGDDLEELATYINGQNDDVKASVGEGG 240 S + T + + VN+ A T + + Sbjct: 180 ATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTD 239 Query: 241 KLQLFASNQRVEGEVEFGGGLASELNIGDGTKTNVSN-IDVTTVAGSQEAVAIIDGA 296 + + + G ++ G + D V + + DG Sbjct: 240 DAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGN 296 Score = 120 bits (303), Expect = 2e-32 Identities = 69/218 (31%), Positives = 99/218 (45%), Gaps = 20/218 (9%) Query: 178 SEEGVGADWRVSDN-TDFTMSYVNKQGEEKEITVNAKAGDDLEEL-ATYINGQNDDVKAS 235 ++ G + +VS ++ V+A + + + +NGQ + Sbjct: 289 TKTGNDGNGKVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKT 348 Query: 236 VGEGGKLQLFASNQRVEGEVEFGGGLASELNIGDGTKTNV------------------SN 277 E KL +N V+GE + A G K + + Sbjct: 349 KNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINE 408 Query: 278 IDVTTVAGSQEAVAIIDGALKSVDSERASLGAFQNRFNHAISNLSNINENVNASSSRIKD 337 + +A ID AL VD+ R+SLGA QNRF+ AI+NL N N+N++ SRI+D Sbjct: 409 DAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIED 468 Query: 338 TDYAKETTQMTKTQILQQASTSILAQAKQSPSAALSLL 375 DYA E + M+K QILQQA TS+LAQA Q P LSLL Sbjct: 469 ADYATEVSNMSKAQILQQAGTSVLAQANQVPQNVLSLL 506
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 32.7 bits (74), Expect = 0.005 Identities = 40/259 (15%), Positives = 81/259 (31%), Gaps = 27/259 (10%) Query: 200 KLEYKTLEDRVKALEQARLAAEEVISESKPEEAAATDGDMV------SEEAEPQVDEQGN 253 K E KT+E + + EV E+K A T + V ++E + ++ Sbjct: 1045 KQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETA 1104 Query: 254 PIEAAPQSE------GDEPQLTSDTKLSDESEQSPLSEDEP----ISSFGASAAQAGQQA 303 +E +++ + P++TS E ++ + EP + Q+ Sbjct: 1105 TVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNT 1164 Query: 304 IDEARQTAGLMPQDSIGGWTETASGTLLDSYHRPELELDEAAIEKAPDVPGWTNTASGTL 363 + Q A + TE+ + +S A + + + +++ Sbjct: 1165 TADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVN----SESSNKPK 1220 Query: 364 TDSYETVKEAQAKFEAEQARIEQELAQEKAKIEEELAQEKAALDEKVAKGELTEEQAKQI 423 +V+ E A A + A L + AK Q + Sbjct: 1221 NRHRRSVRSVPHNVEP--ATTSSNDRSTVALCDLTSTNTNAVLSDARAKA-----QFVAL 1273 Query: 424 QRAKLEPQERERLERIDQA 442 K Q +LE ++ Sbjct: 1274 NVGKAVSQHISQLEMNNEG 1292 Score = 32.3 bits (73), Expect = 0.007 Identities = 35/215 (16%), Positives = 74/215 (34%), Gaps = 42/215 (19%) Query: 246 PQVDEQGNPIEAAP-----QSEGDEPQLTSDTK---LSDESEQSPLSEDEPISSFGASAA 297 P+V+++ ++ + D P + S+ + DE+ P + P + A Sbjct: 983 PEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAE 1042 Query: 298 QAGQQAIDEARQTAGLMPQDSIGGWTETASGTLLDSYHRPELELDEAAIEKAPDVPGWTN 357 + Q++ + + A+ T + E A E +V T Sbjct: 1043 NSKQESKTVEKNE-------------QDATETTAQN--------REVAKEAKSNVKANTQ 1081 Query: 358 TASGTLTDSYETVKEAQAKFEAEQARIEQELAQEKAKIEEELAQEKAALDEKVAKGELTE 417 T + AQ+ E ++ + + +E A +E+E + + ++ Sbjct: 1082 TN-----------EVAQSGSETKETQTTE--TKETATVEKEEKAKVETEKTQEVPKVTSQ 1128 Query: 418 EQAKQIQRAKLEPQERERLERIDQANEQLKQAQES 452 KQ Q ++PQ E N + Q+Q + Sbjct: 1129 VSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTN 1163
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 499 bits (1286), Expect = e-177 Identities = 179/495 (36%), Positives = 269/495 (54%), Gaps = 28/495 (5%) Query: 1 MQGLAKLLVIEDDEANRLNLRNILEFVGESCEALRSDQIENADWSKIWSGVIVGFV--DN 58 M G A +LV +DD A R L L G + + ++V V + Sbjct: 1 MTG-ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPD 59 Query: 59 KSITTVMAKLNSAH-HIPLLVLGDFSHP---VEHLPNLIGELEF---PLNYPQLSEALRH 111 ++ ++ ++ A +P+LV+ + ++ G ++ P + +L + Sbjct: 60 ENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKAS--EKGAYDYLPKPFDLTELIGIIGR 117 Query: 112 CKEFLGRKGVNVVASARKNTLFRSLVGQSLGIQEVRHLIEQVAATEANVLILGESGTGKE 171 R+ + ++ LVG+S +QE+ ++ ++ T+ ++I GESGTGKE Sbjct: 118 ALAEPKRRPSKLEDDSQD---GMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKE 174 Query: 172 VVARNIHYHSSRRNGPFVPINCGAIPPDLLESELFGHEKGAFTGALTTRKGRFELAEGGT 231 +VAR +H + RRNGPFV IN AIP DL+ESELFGHEKGAFTGA T GRFE AEGGT Sbjct: 175 LVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGT 234 Query: 232 LFLDEIGDMPMAMQVKLLRVLQERCFERVGGNTTIKANVRIIAATHRNLETMIDDEKFRE 291 LFLDEIGDMPM Q +LLRVLQ+ + VGG T I+++VRI+AAT+++L+ I+ FRE Sbjct: 235 LFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFRE 294 Query: 292 DLFYRLNVFPIEMPALKERKEDIPLLLQELMTRLQAEGGLPICFTPRAINSLMEHDWPGN 351 DL+YRLNV P+ +P L++R EDIP L++ + + + EG F A+ + H WPGN Sbjct: 295 DLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKEGLDVKRFDQEALELMKAHPWPGN 354 Query: 352 VRELANLVERMVILYPNSLVDVNHLPTKYRYSDIPEFQPETSSFNSIEDQERDVLEDIFS 411 VREL NLV R+ LYP ++ + + R S+IP+ E ++ S +E+ Sbjct: 355 VRELENLVRRLTALYPQDVITREIIENELR-SEIPDSPIEKAAARSGSLSISQAVEE--- 410 Query: 412 ESFDLAARNNFDDHFDAPQSLPPEGVNLKELLADLEVNMINQALEAQGGVVARAADMLGM 471 N +F + P +LA++E +I AL A G +AAD+LG+ Sbjct: 411 ---------NMRQYFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGL 461 Query: 472 RRTTLVEKMRKYNMQ 486 R TL +K+R+ + Sbjct: 462 NRNTLRKKIRELGVS 476
>PF06580#Sensor histidine kinase Length = 349 Score = 31.4 bits (71), Expect = 0.004 Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 20/99 (20%) Query: 243 LVMNAIQ--IAGKE--AQIDVFFRPVNGELRISVQDSGPGVPKELQNKIMEPFFTTRSQG 298 LV N I+ IA +I + NG + + V+++G K + + Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTK------------ES 310 Query: 299 TGLGLAVVQMVCRA---HEGRLELLSEEGDGACFTMCIP 334 TG GL V+ + E +++L ++G + IP Sbjct: 311 TGTGLQNVRERLQMLYGTEAQIKLSEKQG-KVNAMVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 493 bits (1270), Expect = e-174 Identities = 174/482 (36%), Positives = 261/482 (54%), Gaps = 16/482 (3%) Query: 1 MAQSKVLIVEDDEGLREALVDTLALAGYEWLEADCAEDALVKLKANPVDIVVSDVQMAGM 60 M + +L+ +DD +R L L+ AGY+ A + A D+VV+DV M Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 61 GGLALLRSIKQNWPNLPVLLMTAYANIEDAVSAMKEGAIDYMAKPFAPEVLLNMVSR--- 117 LL IK+ P+LPVL+M+A A+ A ++GA DY+ KPF L+ ++ R Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 118 -------YAPVKSEDNGDAVVADEKSLRLLALADKVARTDANVMVLGPSGSGKEVLSRYI 170 S+D V + + ++ +TD +M+ G SG+GKE+++R + Sbjct: 121 EPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARAL 180 Query: 171 HNASPRKDGPFIAINCAAIPDNMLEATLFGYEKGAFTGAVQACPGKFEQAQGGTILLDEI 230 H+ R++GPF+AIN AAIP +++E+ LFG+EKGAFTGA G+FEQA+GGT+ LDEI Sbjct: 181 HDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEI 240 Query: 231 SEMDLNLQAKLLRVLQEREVERLGSRKSIKLDVRVLATSNRDLKQYVSAGNFREDLYYRL 290 +M ++ Q +LLRVLQ+ E +G R I+ DVR++A +N+DLKQ ++ G FREDLYYRL Sbjct: 241 GDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRL 300 Query: 291 NVFPITWPALCDRQGDITPLAKHLAERHCTKQGIPVPRFSPSALEKLLQYPWPGNVRELD 350 NV P+ P L DR DI L +H ++ K+G+ V RF ALE + +PWPGNVREL+ Sbjct: 301 NVVPLRLPPLRDRAEDIPDLVRHFVQQAE-KEGLDVKRFDQEALELMKAHPWPGNVRELE 359 Query: 351 NVVQRALILSENGDISHEHILLEGVD--WQDADSLQHVVQQQEHIAPEIKPIAQAEPEGM 408 N+V+R L I+ E I E I+ ++ + Sbjct: 360 NLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASF 419 Query: 409 IRGLSVGDSLGSELRDQEYAIILETLIECQGRRKEMADKLGISPRTLRYKLAKMRDAGIE 468 L L + EY +IL L +G + + AD LG++ TLR K+ ++ G+ Sbjct: 420 GDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIREL---GVS 476 Query: 469 IP 470 + Sbjct: 477 VY 478
>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE signature. Length = 103 Score = 63.1 bits (153), Expect = 1e-16 Identities = 31/101 (30%), Positives = 57/101 (56%) Query: 3 IDGFNGEMRAMMLEASNTTAPATGAKVSADFSTLLNQAINNVNSLQKSSSDLQTRFDRGD 62 I G G + + A + A + + + F+ L+ A++ ++ Q ++ +F G+ Sbjct: 3 IQGIEGVISQLQATAMSARAQESLPQPTISFAGQLHAALDRISDTQTAARTQAEKFTLGE 62 Query: 63 ADVSLSDVMIARNKSSVAFEATVQVRNKLVEAYKDLMNMPV 103 V+L+DVM K+SV+ + +QVRNKLV AY+++M+M V Sbjct: 63 PGVALNDVMTDMQKASVSMQMGIQVRNKLVAAYQEVMSMQV 103
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 281 bits (719), Expect = 2e-89 Identities = 152/556 (27%), Positives = 261/556 (46%), Gaps = 40/556 (7%) Query: 49 GDLDLLRQVVLVLSISICVALIVMLFFWVKEPEMRPLGV-FETEELIPVLDHLDQQKINY 107 L ++ L+++ S VA++V + W K P+ R L ++ ++ L Q I Y Sbjct: 17 NRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPY 76 Query: 108 KL--DGNTILVETSEFNSIKLDMVRSGLNQSTQAGDDILLQDMGFGVSQRLEQERLKLSR 165 + I V + + ++L + + GL + G + LL FG+SQ EQ + + Sbjct: 77 RFANGSGAIEVPADKVHELRLRLAQQGLPKGGAVGFE-LLDQEKFGISQFSEQVNYQRAL 135 Query: 166 ERQLGKAIEEMKQVRKAKVLLALPKQSVFVRHNQEASASVFLTLNTGSNLKQQEVDSIVD 225 E +L + IE + V+ A+V LA+PK S+FVR + SASV +TL G L + ++ ++V Sbjct: 136 EGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQISAVVH 195 Query: 226 MVASAVPGMKTSRVTVTDQHGRLLNSGSQDPVSAARRKEQELERNQEQALREKIDSVLIP 285 +V+SAV G+ VT+ DQ G LL + + + + E ++ +I+++L P Sbjct: 196 LVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDA-QLKFANDVESRIQRRIEAILSP 254 Query: 286 ILGFGNYTAQVDIEMDFSAVEQTRKQFDPNTPATRSEYALEDYNNGNMVA-----GVPGA 340 I+G GN AQV ++DF+ EQT + + PN A+++ N V GVPGA Sbjct: 255 IVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGA 314 Query: 341 LSNQPPADASIP-----------QDVAQ---MKDGSVLGQGSVRKESTRNFELDTTISHE 386 LSNQP P Q+ Q + + G S ++ T N+E+D TI H Sbjct: 315 LSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRSTQRNETSNYEVDRTIRHT 374 Query: 387 RKQMGVINRQTVAVAIKDRATINPDTGDVTYTPRSEAEINAIRQVLVGTVGFSENRGDLL 446 + +G I R +VAV + + D P + ++ I + +GFS+ RGD L Sbjct: 375 KMNVGDIERLSVAVVVNYKT-----LADGKPLPLTADQMKQIEDLTREAMGFSDKRGDTL 429 Query: 447 NVLSMPFAEPEQEQLADVPIWEHPNFNDWIRWFASALVIIVVILVLIRPAMKKLLNPAGD 506 NV++ PF+ + ++P W+ +F D + L+++VV +L R K + P Sbjct: 430 NVVNSPFSAVD-NTGGELPFWQQQSFIDQLLAAGRWLLVLVVAWILWR----KAVRPQLT 484 Query: 507 DDDEMYGPDGLPIGA--DGETSLIGSDIDAGELFEFGSSIDLPNLHKDEDVLKAVRALVA 564 E + E ++ +L + ++ L E + + +R + Sbjct: 485 RRVEEAKAAQEQAQVRQETEEAVEVRLSKDEQLQQRRANQRLGA----EVMSQRIREMSD 540 Query: 565 NEPELAAQVVKNWMIN 580 N+P + A V++ WM N Sbjct: 541 NDPRVVALVIRQWMSN 556
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 289 bits (742), Expect = 2e-98 Identities = 107/330 (32%), Positives = 201/330 (60%) Query: 20 DISSISGEEKAAILLLSLNEQDAAGIIRHLEPKQVQRVGSAMARAKDLSQDKVSAVHRAF 79 D+S+++G++KAAILL+S+ + ++ + ++L ++++ + +A+ + ++ + V F Sbjct: 11 DVSALTGKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKDNVLLEF 70 Query: 80 LEDIQKYTNIGMGSEDFMRNTLIAALGADKANNLVDQILLGTGSKGLDSLKWMDPRQVAS 139 E + I G D+ R L +LG KA ++++ + S+ + ++ DP + + Sbjct: 71 KELMMAQEFIQKGGIDYARELLEKSLGTQKAVDIINNLGSALQSRPFEFVRRADPANILN 130 Query: 140 IIVNEHPQIQTIVLSYLEADQSAEIIAQFPERVRLDLMMRIANLEEVQPSALAELNEIME 199 I EHPQ ++LSYL+ +++ I++ P V+ ++ RIA ++ P + E+ ++E Sbjct: 131 FIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVREVERVLE 190 Query: 200 KQFAGQAGAQAAKIGGLKAAAEIMNYLDNNVEGLLMEQIRDQDEDLATQIQDLMFVFENL 259 K+ A + GG+ EI+N D E ++E + ++D +LA +I+ MFVFE++ Sbjct: 191 KKLASLSSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEIKKKMFVFEDI 250 Query: 260 IEVDDQGIQKLLRDVPQDVLQKALKGADDGLREKIFKNMSKRAAEMMKDDIEAMPPVRVA 319 + +DD+ IQ++LR++ L KALK D ++EKIFKNMSKRAA M+K+D+E + P R Sbjct: 251 VLLDDRSIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDMEFLGPTRRK 310 Query: 320 DVEAAQKEILAIARRLADSGEIMLSGGADE 349 DVE +Q++I+++ R+L + GEI++S G +E Sbjct: 311 DVEESQQKIVSLIRKLEEQGEIVISRGGEE 340
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 66.4 bits (161), Expect = 4e-15 Identities = 49/210 (23%), Positives = 100/210 (47%), Gaps = 11/210 (5%) Query: 48 WMPDFEQPEEEAVLELTEEQIELIKQG--AYQEGLFQGQEAGFKQGFDKGKEEGFQAGHE 105 W PD P + + + E + +I++ + ++ L Q Q +QG+ G EG Q GH+ Sbjct: 10 WTPDDLAPPQAEFVPIVEPEETIIEEAEPSLEQQLAQLQMQAHEQGYQAGIAEGRQQGHK 69 Query: 106 EGLEQGKNEGIEAGQEHIKQQVDT----FINLANQFAQPLELMNNQVEKQLVDMVLCLVK 161 +G ++G +G+E G K Q L ++F L+ +++ + +L+ M L + Sbjct: 70 QGYQEGLAQGLEQGLAEAKSQQAPIHARMQQLVSEFQTTLDALDSVIASRLMQMALEAAR 129 Query: 162 EVVHVEVQTNPQVILDTVKASVESLPIAGHPITLRLNPEDVDIIRSAYGEDDLNFRNWTL 221 +V+ + ++ ++ ++ P+ LR++P+D+ + G L+ W L Sbjct: 130 QVIGQTPTVDNSALIKQIQQLLQQEPLFSGKPQLRVHPDDLQRVDDMLGA-TLSLHGWRL 188 Query: 222 LSEPALNRGDVQIEAGE----SSVSYRMEE 247 +P L+ G ++ A E +SV+ R +E Sbjct: 189 RGDPTLHPGGCKVSADEGDLDASVATRWQE 218
>FLGFLIJ#Flagellar FliJ protein signature. Length = 147 Score = 40.2 bits (93), Expect = 4e-07 Identities = 29/133 (21%), Positives = 73/133 (54%) Query: 4 AMDFLLEQTKEKENQAVMALNKAKSELEGYYTQLAQIEKYRLDYCQQLVERGQNGLTASQ 63 A+ L + +++ A L + + + QL + Y+ +Y L G+T+++ Sbjct: 6 ALATLKDLAEKEVEDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRNNLNSDMSAGITSNR 65 Query: 64 FVHLHRFLGKLDETLSKQKQAETQFKQQVENCEHYWLEVRKQRKSYEWMIEKKQQEKLKA 123 +++ +F+ L++ +++ +Q Q+ Q+V+ + W E +++ ++++ + E++ L A Sbjct: 66 WINYQQFIQTLEKAITQHRQQLNQWTQKVDIALNSWREKKQRLQAWQTLQERQSTAALLA 125 Query: 124 EAKREQKQMDEFS 136 E + +QK+MDEF+ Sbjct: 126 ENRLDQKKMDEFA 138
>FLGHOOKFLIK#Flagellar hook-length control protein signature. Length = 375 Score = 47.9 bits (113), Expect = 8e-08 Identities = 48/217 (22%), Positives = 85/217 (39%), Gaps = 1/217 (0%) Query: 456 LPDGMTANTIPTAFNPAASPDVAKSQVQSMQAALAAAGLASVKGSSKQTSTEAQGAQPTA 515 P + PT F S + +Q A V + + + + TA Sbjct: 150 APSTVLPTEKPTLFTKLTSEQLTTAQPDDAPGTPAQPLTPLVAEAQSKAEVISTPSPVTA 209 Query: 516 SLYSAQTVTGQTRAENVAAQQPSMPLTRELANEQVAEKVQMMMSKNLKQLDIRLDPPELG 575 + T VAA S PL + +++ + + + + ++RL P +LG Sbjct: 210 AASPLITPHQTQPLPTVAAPVLSAPLGSHEWQQSLSQHISLFTRQGQQSAELRLHPQDLG 269 Query: 576 RMQIRMTMNNDIANVHFTVTNPQARDIIEQTLPRLREMLAQQGMQLADSSVQQQA-SGQQ 634 +QI + ++++ A + + R +E LP LR LA+ G+QL S++ ++ SGQQ Sbjct: 270 EVQISLKVDDNQAQIQMVSPHQHVRAALEAALPVLRTQLAESGIQLGQSNISGESFSGQQ 329 Query: 635 QRQYSADGQGNGQQSSRFASSNEENLEADVKLDLNVT 671 Q A +++ L V L VT Sbjct: 330 QAASQQQQSQRTANHEPLAGEDDDTLPVPVSLQGRVT 366
>FLGMOTORFLIM#Flagellar motor switch protein FliM signature. Length = 344 Score = 244 bits (623), Expect = 8e-81 Identities = 89/328 (27%), Positives = 164/328 (50%), Gaps = 11/328 (3%) Query: 1 MTDLLSQDEIDALLHGVDDVDEIDE---PIEDDLGSAVNFDFSSQDRIVRGRMPTLELIN 57 MT++LSQDEID LL + D E PI D + +DF D+ + +M TL L++ Sbjct: 1 MTEVLSQDEIDQLLTAISSGDASIEDARPISDTRKITL-YDFRRPDKFSKEQMRTLSLMH 59 Query: 58 ERFARHMRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITM 117 E FAR SL LR V + V + + E+ ++ P++L ++ PLKG A++ + Sbjct: 60 ETFARLTTTSLSAQLRSMVHVHVASVDQLTYEEFIRSIPTPSTLAVITMDPLKGNAVLEV 119 Query: 118 EARLVFILVENFFGGDGRFHAKIEGREFTPTERRIIQLLLKIVFEDYKEAWSPVMGVEFE 177 + + F +++ FGG G+ R+ T E +++ ++ + + +E+W+ V+ + Sbjct: 120 DPSITFSIIDRLFGGTGQAAKVQ--RDLTDIENSVMEGVIVRILANVRESWTQVIDLRPR 177 Query: 178 YLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPYSMVEPIRELLDAG--VQS 235 E NP A IV P+E++V+ + +V G + +PY +EPI L + S Sbjct: 178 LGQIETNPQFAQIVPPSEMVVLVTLETKVGEEEGMMNFCIPYITIEPIISKLSSQFWFSS 237 Query: 236 DKMETDVRWSSALREEIMDCPVNFRVNLLEKDISLRDLMELRPGDVIPIE---MPKHAVM 292 + + ++ LR+++ ++ + +S+RD++ LR GD+I + + V+ Sbjct: 238 VRRSSTTQYMGVLRDKLSTVDMDVVAEVGSLRLSVRDILGLRVGDIIRLHDTHVGDPFVL 297 Query: 293 FVEELPTYRVKMGQSNEKLAVQISEEIE 320 + + + G +K+A QI E IE Sbjct: 298 SIGNRKKFLCQPGVVGKKIAAQILERIE 325
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 111 bits (279), Expect = 1e-34 Identities = 57/121 (47%), Positives = 84/121 (69%), Gaps = 13/121 (10%) Query: 28 VDEVLAAPLEELKDTSAPITADE-------------RRKLDTIMDIPVTISMEVGRSQIS 74 +D++ A L E K T+ AD + +D IMDIPV +++E+GR++++ Sbjct: 15 LDDLWADALNEQKATTTKSAADAVFQQLGGGDVSGAMQDIDLIMDIPVKLTVELGRTRMT 74 Query: 75 IRNLLQLNQGSVVELDRLAGESLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 134 I+ LL+L QGSVV LD LAGE LD+L+NG LIA GEVVVV DK+G+R+TD+I+ +ER+++ Sbjct: 75 IKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRR 134 Query: 135 L 135 L Sbjct: 135 L 135
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 284 bits (727), Expect = 1e-98 Identities = 116/230 (50%), Positives = 165/230 (71%), Gaps = 1/230 (0%) Query: 59 FMSVGSGGGIPAFTMTTNPDGSEDYSVTLQILALMTMLGFLPAMVILMTSFTRIVVVMSI 118 ++ + +P T P G + +S+ +Q L +T L F+PA++++MTSFTRI++V + Sbjct: 14 LITPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRIIIVFGL 73 Query: 119 LRQAMGLQQTPSNQVIIGIALFLTFFIMSPVINEVNEQAVQPYLNEQLTAREAFDAAQGP 178 LR A+G P NQV++G+ALFLTFFIMSPVI+++ A QP+ E+++ +EA + P Sbjct: 74 LRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALEKGAQP 133 Query: 179 MKAFMLKQTRVKDLETFVNMSGE-QATNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPF 237 ++ FML+QTR DL F ++ PE V M +L+PA++TSELKTAFQIGF +F+PF Sbjct: 134 LREFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVTSELKTAFQIGFTIFIPF 193 Query: 238 LIIDLVVASVLMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 287 LIIDLV+ASVLMA+GMMM+ P ++LPFKLMLFVLVDGW L++ +LA SF Sbjct: 194 LIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243
>TYPE3IMQPROT#Type III secretion system inner membrane Q protein family signature. Length = 86 Score = 56.7 bits (137), Expect = 2e-14 Identities = 25/70 (35%), Positives = 40/70 (57%) Query: 7 VELFREALWMVLIMVCAIIIPSLLVGLIVAIFQAATSINEQTLSFLPRLIVTLLALMLFG 66 V +AL++VLI+ I + ++GL+V +FQ T + EQTL F +L+ L L L Sbjct: 5 VFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFLLS 64 Query: 67 HWMTQMLMEY 76 W ++L+ Y Sbjct: 65 GWYGEVLLSY 74
>TYPE3IMRPROT#Type III secretion system inner membrane R protein family signature. Length = 261 Score = 124 bits (312), Expect = 1e-36 Identities = 81/221 (36%), Positives = 128/221 (57%), Gaps = 2/221 (0%) Query: 9 LDWIANYFWPFTRISSMLMVMTVTGARFVSPRIRLYLSLAITLALMPAIPAVPEELQLLS 68 L W+ YFWP R+ +++ + R V R++L L++ IT A+ P++PA + S Sbjct: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPV--FS 67 Query: 69 FQGFLTTFEQIVIGVAMGMVTQFIIQTFVLLGQILGMQSSLGFASMVDPANGQNTPLLGQ 128 F +QI+IG+A+G QF G+I+G+Q L FA+ VDPA+ N P+L + Sbjct: 68 FFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLAR 127 Query: 129 LFMFLSTMFFLATDGHLKMLQLVLFSFKTLPIGSGSLNAVDFRELALWLGIMFKTALSMS 188 + L+ + FL +GHL ++ L++ +F TLPIG LN+ F L ++F L ++ Sbjct: 128 IMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLA 187 Query: 189 LSGIIALLTINLSFGVMTRAAPQLNIFSLGFAFALLVGLLI 229 L I LLT+NL+ G++ R APQL+IF +GF L VG+ + Sbjct: 188 LPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISL 228
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 355 bits (913), Expect = e-124 Identities = 108/351 (30%), Positives = 185/351 (52%), Gaps = 8/351 (2%) Query: 8 ERTEEATPRRLQQAREKGQVARSKELASVSVLVIGAVSLMWFGESLARALFKAMGRLFSL 67 E+TE+ TP++++ AR+KGQVA+SKE+ S +++V + LM L+ F+ +L + Sbjct: 4 EKTEQPTPKKIRDARKKGQVAKSKEVVSTALIVALSAMLM----GLSDYYFEHFSKLMLI 59 Query: 68 SREEIFDP--SKLFDIASGALSALLLPLLLILFALFVAAAIGSAGVGGISFSVEAATPKL 125 E+ + P L + L +L + A G S EA P + Sbjct: 60 PAEQSYLPFSQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPDI 119 Query: 126 SKMNPLSGIKRMFGLQSWVELIKSILKVALVTGVAIYLIQASQEDLIQLSLDVYPQNIFH 185 K+NP+ G KR+F ++S VE +KSILKV L++ + +I+ + L+QL + I Sbjct: 120 KKINPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPT-CGIECITP 178 Query: 186 AL-DILLNFVLLISCSLLIVVAIDIPFQIWQHADQLKMTKQEVKDEYKDTEGKPEVKGRI 244 L IL +++ + +++ D F+ +Q+ +LKM+K E+K EYK+ EG PE+K + Sbjct: 179 LLGQILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKR 238 Query: 245 RMLQREAAQRRMMADVPTADVIVTNPEHFSVALRYKQNSDRAPVVVAKGTDHMAMKIREV 304 R +E R M +V + V+V NP H ++ + YK+ P+V K TD +R++ Sbjct: 239 RQFHQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKI 298 Query: 305 AREHDISIVPAPPLARALYYSTELEQQIPDGLFTAVAQILAYVFQLKQYRK 355 A E + I+ PLARALY+ ++ IP A A++L ++ + ++ Sbjct: 299 AEEEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLERQNIEKQ 349
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 88.7 bits (220), Expect = 6e-24 Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 3/105 (2%) Query: 6 KILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKKGDFDFVVTDWNMPGMQGI 65 IL+ DD + +R ++ L G++ + T + GD D VVTD MP Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 66 DLLKNIRADAELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPF 110 DLL I+ LPVL+++A+ I+A++ G Y+ KPF Sbjct: 64 DLLPRIK--KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPF 106
>PF07520#Virulence protein SrfB Length = 1041 Score = 28.4 bits (63), Expect = 0.040 Identities = 11/79 (13%), Positives = 23/79 (29%), Gaps = 5/79 (6%) Query: 41 LTFSTSYSRNAYPDNSYLASRSLDA----SLTVKYETETNWLFSANFSGVHQFDGHEGQY 96 + T+ S Y+A D+ + + F + + Q Sbjct: 150 IALDTALSDQD-QSAHYVAPERADSEKPREFRLVSDPGAMSWFLQRLEADEDGNAVDLQL 208 Query: 97 WRDVWLRAVYRDLYQPTEN 115 W WL+ ++ D + Sbjct: 209 WVSDWLKEMFLDFKRAERP 227
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 44.6 bits (105), Expect = 1e-07 Identities = 16/89 (17%), Positives = 38/89 (42%), Gaps = 1/89 (1%) Query: 24 KKQQAIADREVELILLAKAIVQKEGFANLTMDKLTAASPYSKGTIYNHFCSKEDVILALC 83 K +Q + ++ +A + ++G ++ ++ ++ A+ ++G IY HF K D+ + Sbjct: 4 KTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIW 63 Query: 84 -IHSLKNEALLFNRTAAFEGTTREKMIAM 111 + L A F G + + Sbjct: 64 ELSESNIGELELEYQAKFPGDPLSVLREI 92
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 55.6 bits (134), Expect = 6e-10 Identities = 34/156 (21%), Positives = 69/156 (44%), Gaps = 10/156 (6%) Query: 617 MLSTLPITLILISALMIFALRSWRLGMISLVPNIA-PAVI--GFGLWALISGEINLGLSV 673 ++ TL ++L+ +M L++ R +L+P IA P V+ F + A IN Sbjct: 340 VVKTLFEAIMLVFLVMYLFLQNMR---ATLIPTIAVPVVLLGTFAILAAFGYSINTLTMF 396 Query: 674 VVTLTLGIVVDDAVHFLAK-YQHARKAGQNAEQAVRYAFHTVGRALWITTVVLVAGFSVL 732 + L +G++VDDA+ + + + ++A + + AL +VL A F + Sbjct: 397 GMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPM 456 Query: 733 AM---SQFRLNSDMGQLSAIVIFVALVIDFVLLPSL 765 A S + + +++++ +L P+L Sbjct: 457 AFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 55.6 bits (134), Expect = 7e-10 Identities = 39/242 (16%), Positives = 95/242 (39%), Gaps = 17/242 (7%) Query: 148 RIAKVRTIAMSEPLLVNALVSEKGDVAVINITMQMPGVDETAEVNEVVAYVEQMLSHYRA 207 R+ V + + N + G A G + + ++ L+ + Sbjct: 261 RLKDVARVELGGEN-YNVIARINGKPAAGLGIKLATGANAL----DTAKAIKAKLAELQP 315 Query: 208 QYP-DVTIYKAGIIAMNHS--FAMAAQNDSATLVPTMLLVILVFLTLMLRSFLSVLATLV 264 +P + + + + + ++ TL ++LV LV L L++ + L + Sbjct: 316 FFPQGMKV----LYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMY-LFLQNMRATLIPTI 370 Query: 265 VIIGAIVATLGIVGWAGMFLHVASVNVPTLIMTLAVADCVHVIASM-RHFMRQGMPKSQA 323 + ++ T I+ G ++ ++ L + L V D + V+ ++ R M +P +A Sbjct: 371 AVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEA 430 Query: 324 IHRSVTLNFVPIIITSVTTAIGFL-MMNMSDS--PVLRDFGNLSALGVMIACVLSVSLLP 380 +S++ ++ ++ + F+ M S + R F + ++ ++++ L P Sbjct: 431 TEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTP 490 Query: 381 AL 382 AL Sbjct: 491 AL 492 Score = 45.2 bits (107), Expect = 1e-06 Identities = 25/169 (14%), Positives = 67/169 (39%), Gaps = 11/169 (6%) Query: 231 QNDSATLVPTMLLVILVFLTLMLRSFLSVLATLVVIIGAIVATLGIVGWAGMFLHVASVN 290 + + + +V + + S + V++ + +G++ L + Sbjct: 866 RLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVL--LAATLFNQKND 923 Query: 291 VPTLI-----MTLAVADCVHVIASMRHFMR-QGMPKSQAIHRSVTLNFVPIIITSVTTAI 344 V ++ + L+ + + ++ + M +G +A +V + PI++TS+ + Sbjct: 924 VYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFIL 983 Query: 345 GFLMMNMSD---SPVLRDFGNLSALGVMIACVLSVSLLPALLNLLPVRF 390 G L + +S+ S G G++ A +L++ +P ++ F Sbjct: 984 GVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFVVIRRCF 1032 Score = 33.7 bits (77), Expect = 0.003 Identities = 19/125 (15%), Positives = 52/125 (41%), Gaps = 5/125 (4%) Query: 614 MASMLSTLPITLILISALMIFALRSWRLGMISLVPNIAPAVIG--FGLWALISGEINLGL 671 + + I+ +++ + SW + + ++ + ++G L + + ++ Sbjct: 869 GNQAPALVAISFVVVFLCLAALYESWSIPVSVML-VVPLGIVGVLLAAT-LFNQKNDVYF 926 Query: 672 SVVVTLTLGIVVDDAVHFLAKYQHA-RKAGQNAEQAVRYAFHTVGRALWITTVVLVAGFS 730 V + T+G+ +A+ + + K G+ +A A R + +T++ + G Sbjct: 927 MVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVL 986 Query: 731 VLAMS 735 LA+S Sbjct: 987 PLAIS 991
>TYPE3OMBPROT#Type III secretion system outer membrane B protein family signature. Length = 538 Score = 28.1 bits (62), Expect = 0.049 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 7/47 (14%) Query: 50 PEERREAGQEINKAKEVVQHALAARKDALQRAELEAKLASETIDVTL 96 ER A + NKA+E+V AL +R + L +A L+ +T+D+ + Sbjct: 237 SSERAVAAR--NKAEELVSAALYSRPELLSQA-----LSGKTVDLKI 276
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 68.5 bits (167), Expect = 2e-16 Identities = 22/86 (25%), Positives = 36/86 (41%) Query: 4 RSSTKEKILDVAEGLFAEYGFNDTSLRTITGKAGVNLASVNYHFGDKKTLVRAVLNRYLE 63 T++ ILDVA LF++ G + TSL I AGV ++ +HF DK L + Sbjct: 9 AQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSES 68 Query: 64 ALMPAVKQSLTQLNSQESYTMDEVFE 89 + + + + E+ Sbjct: 69 NIGELELEYQAKFPGDPLSVLREILI 94
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 30.6 bits (69), Expect = 0.033 Identities = 36/167 (21%), Positives = 71/167 (42%), Gaps = 28/167 (16%) Query: 151 QDGDFIALEDGSQLGPLRVDREQRLNGSRMVADISLLRMLKRSSGLSVIACAEMPPEKLE 210 DG + L+D + + + E +R+ + +K ++G + + A+ KL Sbjct: 255 SDGSVVRLKD---VARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLA 311 Query: 211 HLKRYLPNGLTLV---RNSQDELESLTKAFHLNLTAMGMLSFLVGLFIFYQAMSLSLIQR 267 L+ + P G+ ++ + S+ + A+ ML FLV +++F Q M +LI Sbjct: 312 ELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAI-MLVFLV-MYLFLQNMRATLI-- 367 Query: 268 QPLVGI----------MRQTGVT-------GMQLAKALLLELTILVL 297 P + + + G + GM LA LL++ I+V+ Sbjct: 368 -PTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVV 413
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 48.2 bits (115), Expect = 4e-08 Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 23/128 (17%) Query: 21 KVLVLGASGYVGSQLIPQLLEQGYQVTAAARHID-----------HLRARVLPHPSLTFH 69 K LV GA+G++G + +LLE G+QV ID R +L P FH Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVG----IDNLNDYYDVSLKQARLELLAQPGFQFH 57 Query: 70 YLDLADQEQTQALIP--QFELIYFLVH------GMAHGHDFVDYELSLADHFYQALVGSD 121 +DLAD+E L FE ++ H + + H + D L+ + + + Sbjct: 58 KIDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNK 117 Query: 122 VKHVIYLS 129 ++H++Y S Sbjct: 118 IQHLLYAS 125
>OMS28PORIN#OMS28 porin signature. Length = 257 Score = 30.9 bits (69), Expect = 0.015 Identities = 27/114 (23%), Positives = 55/114 (48%), Gaps = 15/114 (13%) Query: 592 AQEALESHIDTLAPDAEIAVMVRQQVELNKRLTFERIESLRMSFPEIIQALQSQAATRLL 651 +++A++ ++ E ++ +Q+ LNK + +E + F ++ Q ++ L Sbjct: 138 SKKAVQETQKAVSVAGEATFLIEKQIMLNKSPNNKELELTKEEFAKVEQVKET------L 191 Query: 652 LNRERAVINDQLKQAVLDKPEAQKLLNMVEERMAALQKESIFDKSQEQKLINDI 705 + ERA+ D+ Q EAQK+LNMV + K+ + K K I+++ Sbjct: 192 MASERAL--DETVQ------EAQKVLNMVNG-LNPSNKDQVLAKKDVAKAISNV 236
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 73.8 bits (181), Expect = 2e-16 Identities = 86/416 (20%), Positives = 162/416 (38%), Gaps = 56/416 (13%) Query: 26 TNQSQAVSQSQISLFLFAVLGAIGALTPLAIDMYLPAMPTIARDLGVDAGAVQFTLTAYT 85 T+ SQ+ + L +L L + +++ ++P IA D + + TA+ Sbjct: 3 TSYSQSNLRHNQILIWLCILSFFSVLNEMVLNV---SLPDIANDFNKPPASTNWVNTAFM 59 Query: 86 AGFALGQLIHGPLADSFGRRPVLLLGVLFFGLAAVVSATT-NGIDALTYVRTAQGFAGAA 144 F++G ++G L+D G + +LL G++ +V+ + L R QG AA Sbjct: 60 LTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAA 119 Query: 145 AAVIIQAVVRDMFDREDFARAMSFVTLVITIAPLVAPMIGGHLAIWFGWRSIFWVLAFFA 204 ++ VV +E+ +A + ++ + V P IGG +A + W + + Sbjct: 120 FPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITI 179 Query: 205 VIVIALVWWQIPETLKVENRQPLRFK---------------TTMRNYL------------ 237 + V L+ E V + K TT + Sbjct: 180 ITVPFLMKLLKKE---VRIKGHFDIKGIILMSVGIVFFMLFTTSYSISFLIVSVLSFLIF 236 Query: 238 --------------KLCCNKTAMGLILSGAFSFSGMFAFLTAGSFVYIDIYGISPDQFGY 283 L N M +L G F + F++ ++ D++ +S + G Sbjct: 237 VKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGS 296 Query: 284 LFGL-NIVAMIIMTSLNGRMVKKVGSHFMLRLGLTVQLIAGLGLFVSWLLDLGLWGTVPF 342 + +++II + G +V + G ++L +G+T ++ L S+LL+ W Sbjct: 297 VIIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTA--SFLLETTSWFMTII 354 Query: 343 VVLFIGTLSTIGSNAMALLLSG-YPNMAGTASSLAGTLRF---GTG-SLVGALVAI 393 +V +G LS + ++ S AG SL F GTG ++VG L++I Sbjct: 355 IVFVLGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSI 410
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 81.8 bits (202), Expect = 3e-20 Identities = 32/124 (25%), Positives = 60/124 (48%) Query: 2 KILVVEDDPRLGEQIIESLEKTGWVPELSQDGIDALYRATSEEWDAIVLDLGLPKLDGLT 61 ILV +DD + + ++L + G+ ++ + + + D +V D+ +P + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 VLKGIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRRASG 121 +L I+ + PV+++SA++T ++ GA DYL KPF++ ELI I L Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 122 NASP 125 S Sbjct: 125 RPSK 128
>PF06580#Sensor histidine kinase Length = 349 Score = 28.7 bits (64), Expect = 0.049 Identities = 22/94 (23%), Positives = 31/94 (32%), Gaps = 24/94 (25%) Query: 352 LLENSYKWARSQ------IRVHSTLTSDDQLTLIIEDNGPGIAEEHLTQVLKRGVRLDET 405 L+EN K +Q I + T + +TL +E+ G + T Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKD-NGTVTLEVENTGSLALK--------------NT 307 Query: 406 TPGTGLGLNIVAE---MAYSYRGDLTLERSQLGG 436 TG GL V E M Y + L Q Sbjct: 308 KESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKV 341
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 32.5 bits (74), Expect = 0.004 Identities = 18/88 (20%), Positives = 39/88 (44%), Gaps = 12/88 (13%) Query: 462 ENPKKIVVNLAPLE------TLANDHPALIAELSRRFLS-EQISPELALIIEQNLNQLKE 514 E+P+ I + L+ L+ L++ + ++RR ++ SPE+ +E+ L + Sbjct: 135 EHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVREVERVLEKKLA 194 Query: 515 HQQNTKVRNA-----LHIILNSQEFHTE 537 + +A + I+N + TE Sbjct: 195 SLSSEDYTSAGGVDNVVEIINMADRKTE 222
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 504 bits (1299), Expect = e-164 Identities = 228/1055 (21%), Positives = 444/1055 (42%), Gaps = 67/1055 (6%) Query: 18 VAAYFIRNRVISWMISLIFLIGGVAAFFGLGRLEDPAFTIKDAMVVTSYPGATPQQVEEE 77 +A +FIR + +W++++I ++ G A L + P V +YPGA Q V++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 78 VTYPLEKAIQQLTYVDEVNSISSR-GLSQITVTMKNNYGPDDLPQIWDELRRKVNDLKGQ 136 VT +E+ + + + ++S S G IT+T ++ PD +++ K+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQV---QVQNKLQLATPL 117 Query: 137 LPPGVNDPQV-IDDFGDVYGILLAVTGDGYSY--KELLDYVD-YLRRELELVDGVSKVSV 192 LP V + ++ Y ++ D ++ DYV ++ L ++GV V + Sbjct: 118 LPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQL 177 Query: 193 TGQQQEQVFIEISMKRLSSLGISPNTVFNLLSTQNVVSDAGAIRIGDEYI-------RIH 245 G Q + I + L+ ++P V N L QN AG + G + I Sbjct: 178 FGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQL-GGTPALPGQQLNASII 235 Query: 246 PTGEFQNVDQLGDLIITESGAQGLIYLRDVADIKRGYVEVPNNIINFNGKLALNVGVSFA 305 F+N ++ G + + + ++ L+DVA ++ G E N I NGK A +G+ A Sbjct: 236 AQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELG-GENYNVIARINGKPAAGLGIKLA 294 Query: 306 QGVNVVEVGKSFDRRLAELKYQQPVGIDISEIYSQPKEVDKSVSGFVVSLGQAVAIVIIV 365 G N ++ K+ +LAEL+ P G+ + Y V S+ V +L +A+ +V +V Sbjct: 295 TGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLV 354 Query: 366 LLFFMG-LRSGLLIGLILLLTVLGTFIFMQYFKIDLQRISLGALVIALGMLVDNAIVVVE 424 + F+ +R+ L+ + + + +LGTF + F + +++ +V+A+G+LVD+AIVVVE Sbjct: 355 MYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVE 414 Query: 425 GILIGTQKGRTRLQAAT-DIVTQTKWPLLGATVIAVTAFAPIGLSEDATGEYCGTLFTVL 483 + + + + AT ++Q + L+G ++ F P+ +TG + Sbjct: 415 NVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITI 474 Query: 484 LISLMLSWFTAISLTPFFADIFFKGQKVNVSESGEEVDPYNGMIFVV-------YKNFLE 536 + ++ LS A+ LTP K +E E + G Y N + Sbjct: 475 VSAMALSVLVALILTPALCATLLKPVS---AEHHENKGGFFGWFNTTFDHSVNHYTNSVG 531 Query: 537 FCMKRAWLTMIVLVLGLGVSLYGFTLVKQAFFPSSTTPMFQADIWLPEGTDIRATNTKLK 596 + +++ L + + F + +F P +F I LP G T L Sbjct: 532 KILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLD 591 Query: 597 ALESWL--AEQDNVEHITTTAGKGLQRFMLTYAPEKSYAAYGEIT-----TRVTSYEALD 649 + + E+ NVE + T G +++ + A ++ R + + Sbjct: 592 QVTDYYLKNEKANVESVFTVNG-------FSFSGQAQNAGMAFVSLKPWEERNGDENSAE 644 Query: 650 PLMAKFRQH---VKENFPEINYKLKQIELGPGGGAKIE-ARIIGSDPTVLRSIAAQVMDI 705 ++ + + +++ F +ELG G E G L Q++ + Sbjct: 645 AVIHRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGM 704 Query: 706 MYADAGA-TNVRHDWRERTKVLEPQFNESQARRYGITKSDVDDFLAMSFSGMAIGIYRDG 764 + +VR + E T + + ++ +A+ G++ SD++ ++ + G + + D Sbjct: 705 AAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDR 764 Query: 765 TTLMPIVARLPDEERVDIRNIEGMKIWSPALSEFIPLQQVTLGYELLWED--PIIVRKNR 822 + + + + R+ +++ + + S A E +P T W P + R N Sbjct: 765 GRVKKLYVQADAKFRMLPEDVDKLYVRS-ANGEMVPFSAFT---TSHWVYGSPRLERYNG 820 Query: 823 KRVLTVMADPD-ILGEETASTLQKRLMPQIEAIQLPPGYSLEWGGEYESSRDAQASLFTT 881 + + + A L + L + LP G +W G R + Sbjct: 821 LPSMEIQGEAAPGTSSGDAMALMENLASK-----LPAGIGYDWTGMSYQERLSGNQAPAL 875 Query: 882 MPMGYLFMFLITVFLFNSVKEPLIVWLTVPLAVIGVTTGLLALNTPFGFMALLGFLSLSG 941 + + ++ +FL L+ S P+ V L VPL ++GV N ++G L+ G Sbjct: 876 VAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIG 935 Query: 942 MLLKNGIVLLDQI-EIEMKSGKDPYVAVVDAALSRVRPVCMAAITTILGMVPLLPDI--- 997 + KN I++++ ++ K GK A + A R+RP+ M ++ ILG++PL Sbjct: 936 LSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAG 995 Query: 998 --FFKPMAVTIMFGLGFATILTLIVVPVLYRLFHK 1030 + + +M G+ AT+L + VPV + + + Sbjct: 996 SGAQNAVGIGVMGGMVSATLLAIFFVPVFFVVIRR 1030
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 42.9 bits (101), Expect = 1e-06 Identities = 27/132 (20%), Positives = 44/132 (33%), Gaps = 30/132 (22%) Query: 77 GEVRSLYVKEGDRIKKGDVIAELDPTDYRLDVDNAQARFSV------------------- 117 V+ + VKEG+ ++KGDV+ +L D Q+ Sbjct: 105 SIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNK 164 Query: 118 ---------VDSQFKRSEPLVKKGLLAKSQFDEIAAQRQIALAELELAKLRLSFTQLKAP 168 Q E +++ L K QF Q Q EL L K R + A Sbjct: 165 LPELKLPDEPYFQNVSEEEVLRLTSLIKEQFS--TWQNQKYQKELNLDKKRAERLTVLAR 222 Query: 169 VDGIISRVSVDQ 180 ++ + V++ Sbjct: 223 INRYENLSRVEK 234 Score = 37.9 bits (88), Expect = 5e-05 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 8/85 (9%) Query: 144 AQRQIALAELELAKL--RLSFTQLKAPVDGIISRVSV-DQFENVQVGQQVVNIHSVD--- 197 I L LELAK R + ++APV + ++ V + V + ++ I D Sbjct: 307 TTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTL 366 Query: 198 EVEILIQ--LPDQLYVNQPTREKLE 220 EV L+Q + V Q K+E Sbjct: 367 EVTALVQNKDIGFINVGQNAIIKVE 391
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 52.5 bits (126), Expect = 1e-09 Identities = 36/219 (16%), Positives = 77/219 (35%), Gaps = 31/219 (14%) Query: 67 QLQTIDVTAGQRVTKGQVLATLNPDEYALLAKQARANFKLADVQYERYKKLRADKVVSEQ 126 + + ++ RV K Q+ E +L+ + + E KLR Sbjct: 258 ENKYVEAVNELRVYKSQLEQI----ESEILSAKEEYQLVTQLFKNEILDKLR-------- 305 Query: 127 DFDQAQANHNSARATLEQAEANLRYTKLIAPYDGTIS-LIPAENHEYVAAKQGVMNI-QT 184 Q N L + E + + + AP + L V + +M I Sbjct: 306 ---QTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPE 362 Query: 185 NQLMKVIFQLPDHLLGRFSQGVEPNAVMRFDAFPGSEFPLRFQEI-----DTEADTKTG- 238 + ++V + + +G + G A+++ +AFP + + ++ D D + G Sbjct: 363 DDTLEVTALVQNKDIGFINVGQN--AIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGL 420 Query: 239 SYKVTMIMERPA------DLGVLPGMAGSVHVSAKSQSA 271 + V + +E ++ + GMA + + +S Sbjct: 421 VFNVIISIEENCLSTGNKNIPLSSGMAVTAEIKTGMRSV 459 Score = 35.6 bits (82), Expect = 3e-04 Identities = 19/91 (20%), Positives = 31/91 (34%), Gaps = 3/91 (3%) Query: 66 GQLQTIDVTAGQRVTKGQVLATLNPDEYALLAKQARANFKLADVQYERYKKLRADKVVSE 125 ++ I V G+ V KG VL L + +++ A ++ RY + E Sbjct: 105 SIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRY---QILSRSIE 161 Query: 126 QDFDQAQANHNSARATLEQAEANLRYTKLIA 156 + + E LR T LI Sbjct: 162 LNKLPELKLPDEPYFQNVSEEEVLRLTSLIK 192
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 352 bits (906), Expect = e-121 Identities = 129/341 (37%), Positives = 186/341 (54%), Gaps = 4/341 (1%) Query: 3 QNLIGESPAFLSVLDKVSKLAPIERPILIIGERGTGKELIAQRLHYLSKRWDKPLLSLNC 62 L+G S A + +++L + ++I GE GTGKEL+A+ LH KR + P +++N Sbjct: 137 MPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAINM 196 Query: 63 ATLSEGLIDSELFGHESGSFTGSKGKHKGRFERAEGGTLFLDELATAPLMVQEKLLRVIE 122 A + LI+SELFGHE G+FTG++ + GRFE+AEGGTLFLDE+ P+ Q +LLRV++ Sbjct: 197 AAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQ 256 Query: 123 YGEYERVGGHQPLTADVRLVCATNADLVKMAEEGQFRADLLDRLAFDVITLPPLRERQED 182 GEY VGG P+ +DVR+V ATN DL + +G FR DL RL + LPPLR+R ED Sbjct: 257 QGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLNVVPLRLPPLRDRAED 316 Query: 183 ILLLAEHYAIKMCRELKLDYFVGFTSHANEQLTQYRWPGNVRELKNVVERAI--YRHGLN 240 I L H+ + +E F A E + + WPGNVREL+N+V R Y + Sbjct: 317 IPDLVRHFVQQAEKEGLD--VKRFDQEALELMKAHPWPGNVRELENLVRRLTALYPQDVI 374 Query: 241 PDPIDELIFNPFATGWESEKAEQDQPNASSTASSSTSDDQLSPPATTEISFPIDYKQWQE 300 I E EKA + S + + + Q + Y + Sbjct: 375 TREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFGDALPPSGLYDRVLA 434 Query: 301 EQDIKLLNQALEASKFNQRQAADLLGLSYHQFRGMVRKYAL 341 E + L+ AL A++ NQ +AADLLGL+ + R +R+ + Sbjct: 435 EMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGV 475
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 65.6 bits (160), Expect = 1e-13 Identities = 30/216 (13%), Positives = 68/216 (31%), Gaps = 24/216 (11%) Query: 139 ALRAAQAELELVGQSIGANTAAVEVAQARVVEALAARNNAREQAARTETLAKRGVLSK-- 196 Q + ++ A AR+ + + +L + ++K Sbjct: 194 QFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHA 253 Query: 197 ------------ADLDNALESKTRAQAGLEAAEAALVQAKQN-----LGPAGNNNPQILA 239 +L + ++ + +A+ Q L I Sbjct: 254 VLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGL 313 Query: 240 AMAKLEKAQLDLQKTNVTAPSKGVLTNVQL-TNGQRANAGTPLLTFI-DPRGVWISAQLR 297 +L K + Q + + AP + +++ T G L+ + + + ++A ++ Sbjct: 314 LTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQ 373 Query: 298 ENSLEHIREGQRVDIVLDALPGR---VLSGKIDSIG 330 + I GQ I ++A P L GK+ +I Sbjct: 374 NKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNIN 409
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 47.9 bits (114), Expect = 6e-08 Identities = 24/122 (19%), Positives = 51/122 (41%), Gaps = 7/122 (5%) Query: 9 KVLIADDSRLVVNSVNLAIKQLGFHSDNIHLAYKPSEVIALCKSVDMDIIILDYNFNSNL 68 +L+ADD + +N A+ + G+ ++ + + + + D D+++ D + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGY---DVRITSNAATLWRWIAAGDGDLVVTDVVM-PDE 60 Query: 69 NGHQIFYELSHYKSIKPTTIFVYVTGENALKTVKTILESGPDDYILKPFTQPAIKGRLRT 128 N + L K +P + ++ +N T E G DY+ KPF + G + Sbjct: 61 NAFDL---LPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117 Query: 129 II 130 + Sbjct: 118 AL 119
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 56.4 bits (136), Expect = 5e-10 Identities = 19/82 (23%), Positives = 41/82 (50%), Gaps = 2/82 (2%) Query: 1006 GNVLVAEDNAINAILFSKQLSELGINADVVPNGLIAFNKLTEESHGYDLLITDYHMPEMD 1065 +LVA+D+A + ++ LS G + + N + + + DL++TD MP+ + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWI--AAGDGDLVVTDVVMPDEN 61 Query: 1066 GMQLVANLREIECHIPVIGCTA 1087 L+ +++ +PV+ +A Sbjct: 62 AFDLLPRIKKARPDLPVLVMSA 83
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 51.0 bits (122), Expect = 6e-09 Identities = 18/83 (21%), Positives = 41/83 (49%), Gaps = 4/83 (4%) Query: 399 LIVDDHPVVGSALCQAFTRV-HQVQTVASETTILKALNYIRDSSCNLLLIDVDLRGEHGY 457 L+ DD + + L QA +R + V+ ++ T +I +L++ DV + E+ + Sbjct: 7 LVADDDAAIRTVLNQALSRAGYDVRITSNAAT---LWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 458 ELIKQAKKIGFNGKAILMTSSGN 480 +L+ + KK + ++M++ Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNT 86 Score = 47.9 bits (114), Expect = 7e-08 Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 5/82 (6%) Query: 2 KVLIVEDDKIQSSKLKIDLRNLGYSQVYIAPSCQVAIDLYKEHRFELIFCDIQLPDNDGI 61 +L+ +DD + L L GY V I + +L+ D+ +PD + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGY-DVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 62 YLLNQLAHISRSPH--VIIMSA 81 LL ++ P V++MSA Sbjct: 64 DLLPRIK--KARPDLPVLVMSA 83
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 32.8 bits (75), Expect = 0.003 Identities = 11/66 (16%), Positives = 27/66 (40%), Gaps = 9/66 (13%) Query: 73 YSAGLGITKV--GTNEAVT---PDTQFQIGSVTKTFLATLAMQQSEQGILDLNARVV--- 124 S +G+ ++ + +T D +F + S K L + + + G L ++ Sbjct: 36 LSGRVGMIEMDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQ 95 Query: 125 -DILPW 129 D++ + Sbjct: 96 QDLVDY 101 Database: VIFASCDB Posted date: Jun 1, 2014 9:04 PM Number of letters in database: 79,683 Number of sequences in database: 213 Lambda K H 0.313 0.129 0.374 Gapped Lambda K H 0.267 0.0668 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 213 Number of Hits to DB: 132,177,086 Number of extensions: 5933746 Number of successful extensions: 21901 Number of sequences better than 5.0e-02: 685 Number of HSP's gapped: 20824 Number of HSP's successfully gapped: 1287 Length of database: 79,683 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits)