>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 29.6 bits (66), Expect = 0.047 Identities = 28/104 (26%), Positives = 42/104 (40%), Gaps = 5/104 (4%) Query: 535 NADKTDKKAQRQQAAALRQQLAPHKREADKLERDLGLVNEKLAKVEEALA----DSTNYE 590 +A + KK + L +Q + L RDL E ++E + E Sbjct: 319 DASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKISE 378 Query: 591 AANKDKLRDLLAEQAKLKVREAELEDAWMQALELLESMQAELEA 634 A+ + RDL A + K E LE+A + L LE + ELE Sbjct: 379 ASRQSLRRDLDASREAKKQVEKALEEANSK-LAALEKLNKELEE 421
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 47.0 bits (111), Expect = 8e-08 Identities = 36/206 (17%), Positives = 53/206 (25%), Gaps = 26/206 (12%) Query: 132 TRDAKPVAPKAVAKTPAAKAPAKTAAKAPVKTAAAKPVAKAAAKPSAAAKPAAKTAVAKA 191 T D + + P+ A V A PV P A A P+ T Sbjct: 991 TVDTTNITTPNNIQADVPSVPSNNEEIARVDEA---PVP-----PPAPATPSETTETVAE 1042 Query: 192 PVKAAAKPAPRATAAAKPVAAKTTAAKPAAARTTAAKPAAAKPAATKAPVAKTTASNAAK 251 K +K + A A+ A A + A + + +T + K Sbjct: 1043 NSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKET-QTTETK 1101 Query: 252 PAAAKAAAAKAPVKAPVKAPAKAPAKAPVKAAAKPVAKPAAKPAVKPAAAKPATPAPAAA 311 A KA K + + P + V P + T P A Sbjct: 1102 ETATVEKEEKA------KVETEKTQEVPKVTSQ-----------VSPKQEQSETVQPQAE 1144 Query: 312 KPTTPAPAAPAAAPATPANGATPTSA 337 P P + N T Sbjct: 1145 PARENDPTVNIKEPQSQTNTTADTEQ 1170 Score = 45.4 bits (107), Expect = 2e-07 Identities = 35/199 (17%), Positives = 53/199 (26%), Gaps = 8/199 (4%) Query: 119 IGRVKEAVGKILTTRDAKPVAPKAVAKTPA--AKAPAKTAAKAPVKTAAAKPVAKAAAKP 176 I RV EA P P +T A +K +KT K + AK Sbjct: 1017 IARVDEAP-----VPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKE 1071 Query: 177 SAAAKPAAKTAVAKAPVKAAAKPAPRATAAAKPVAAKTTAAKPAAARTT-AAKPAAAKPA 235 + + A A + K K AK +T K + Sbjct: 1072 AKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSP 1131 Query: 236 ATKAPVAKTTASNAAKPAAAKAAAAKAPVKAPVKAPAKAPAKAPVKAAAKPVAKPAAKPA 295 + + A+ + + A + PAK +PV + Sbjct: 1132 KQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNT 1191 Query: 296 VKPAAAKPATPAPAAAKPT 314 P PA +PT Sbjct: 1192 GNSVVENPENTTPATTQPT 1210
>INFPOTNTIATR#Macrophage infectivity potentiator signature. Length = 233 Score = 137 bits (345), Expect = 4e-42 Identities = 71/211 (33%), Positives = 111/211 (52%), Gaps = 3/211 (1%) Query: 18 AAEAPPASSDGHDLAYSLGASLGERLHQEVPDLDLKALVEGLQQAYQGKPLALKQERIDQ 77 A +A ++D L+YS+GA LG+ + D++ L +G+Q G L L +E++ Sbjct: 21 ATDATSLTTDKDKLSYSIGADLGKNFKNQGIDINPDVLAKGMQDGMSGAQLILTEEQMKD 80 Query: 78 ILREHDAAIAQAETAGTDAPTEAALKAERTFMDSEKAKPGVKVLADGILMTELTPGTGPK 137 +L + + +A + E F+ + K+KPG+ VL G+ + GTG K Sbjct: 81 VLSKFQKDLMAKRSAEFNKKAEENKAKGDAFLSANKSKPGIVVLPSGLQYKIIDAGTGAK 140 Query: 138 PSADGRVEVRYVGRLPDGTIFD---QSTQPQWFRLDSVISGWTSALQNMPTGAKWRLVIP 194 P V V Y G L DGT+FD ++ +P F++ VI GWT ALQ MP G+ W + +P Sbjct: 141 PGKSDTVTVEYTGTLIDGTVFDSTEKAGKPATFQVSQVIPGWTEALQLMPAGSTWEVFVP 200 Query: 195 SDQAYGAEGAGDLIDPFTPLVFEIELVAVSQ 225 +D AYG G I P L+F+I L++V + Sbjct: 201 ADLAYGPRSVGGPIGPNETLIFKIHLISVKK 231
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 29.5 bits (66), Expect = 0.007 Identities = 32/148 (21%), Positives = 50/148 (33%), Gaps = 18/148 (12%) Query: 23 QPMSLLKCSNNESYEAFSGITGYANDPAQVSSAKNGPLPPGRYYIL--NRESGGRLGWLR 80 QP LL+ S Y+A SG+TG + + Y+L + L+ Sbjct: 95 QPFQLLETSPQFIYQAQSGLTGRDGPDNPANGPRPLYNVEKDAYVLAEGQNE------LQ 148 Query: 81 DPIT----DLIARTDRSDWFSLYRDDGEIDDRTIIDNVERENFRLHPVGPLGLSEGCVTM 136 P+T T F L R D ++ + N + + G L S +T+ Sbjct: 149 VPMTYTDAAGNTFTKT---FVLKRGDYAVNVNYNVQNAGEKPLEISSFGQLKQS---ITL 202 Query: 137 TSKLGFEQLSIYLHNMEGDRLPGSGQKY 164 L + LH G +KY Sbjct: 203 PPHLDTGSSNFALHTFRGAAYSTPDEKY 230
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 36.8 bits (85), Expect = 2e-04 Identities = 29/149 (19%), Positives = 64/149 (42%), Gaps = 12/149 (8%) Query: 53 GMPGDEVAMIFTLYGVTVGISSWLAGALSNIWGPKRVMFLGLIIWSVFEVLFLVYGLQEL 112 P + T + +T I + + G LS+ G KR++ G+II ++ + Sbjct: 45 NKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIII---NCFGSVIGFVGHS 101 Query: 113 SYSMILLTYGLRGFGYPLFAYGFLVWIAASTPSRKMGMAVGWFWVAYAAGLPMLGSLVAS 172 +S++++ ++G G F +V +A P G A G + A +G Sbjct: 102 FFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFG-LIGSIVAMGEGVG----- 155 Query: 173 IAIPLIGALLTFWLSFALVVIGGVIGLVG 201 P IG ++ ++ ++ +++ +I ++ Sbjct: 156 ---PAIGGMIAHYIHWSYLLLIPMITIIT 181
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 46.6 bits (110), Expect = 3e-08 Identities = 40/243 (16%), Positives = 95/243 (39%), Gaps = 38/243 (15%) Query: 12 NVLICGASRGIGLALCAALLARDDVAQVWAVARKASTSTELATLAEQYGQRIKRVDCDAR 71 I GA++GIG A+ L ++ A + AV ++ + + + + D R Sbjct: 10 IAFITGAAQGIGEAVARTLASQG--AHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVR 67 Query: 72 NEQSLEALVSETLDGCDHLHLVISTLGILHQDGAKAEKGLAQLTLASLQASFATNTFAPI 131 + +++ + + + ++++ G+L + L+ +A+F+ N+ Sbjct: 68 DSAAIDEITARIEREMGPIDILVNVAGVLRP------GLIHSLSDEEWEATFSVNSTGVF 121 Query: 132 LLLKHLLPLLRKQPSTFAALSARVGSIGDNRLG----GWYSYRASKAALNQLLHTASIEL 187 + + + + S + ++G N G +Y +SKAA +EL Sbjct: 122 NASRSVSKYMMDRRS------GSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLEL 175 Query: 188 KRLNPASTVLAIHPGTTDTELSQP------------------FQANVPEGQLFEPAFSAE 229 N +++ PG+T+T++ F+ +P +L +P+ A+ Sbjct: 176 AEYNIRCNIVS--PGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIAD 233 Query: 230 RII 232 ++ Sbjct: 234 AVL 236
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 55.8 bits (134), Expect = 7e-12 Identities = 24/118 (20%), Positives = 52/118 (44%), Gaps = 3/118 (2%) Query: 9 ADPTRRQRMIREDRLRQLLDVAWRLVGERGSDALTLGRLAEQAGVTKPVVYDHFATRAAL 68 A T+++ ++ + +LDVA RL ++G + +LG +A+ AGVT+ +Y HF ++ L Sbjct: 2 ARKTKQEA---QETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDL 58 Query: 69 FAALYEDFDQRQTARMDIAIAASEATLDGVASVVASSYVDCVLLQGHEIAGVIAVLSS 126 F+ ++E + A V + ++ + + + + Sbjct: 59 FSEIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHK 116
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 117 bits (293), Expect = 1e-33 Identities = 79/263 (30%), Positives = 119/263 (45%), Gaps = 15/263 (5%) Query: 5 LTSRIAIITGAAQGIGAAIARRFLQEGCFVYVTDIND---VLGRETARALGDRACYLHLD 61 + +IA ITGAAQGIG A+AR +G + D N + +A A D Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 62 VRCEEDWQRVTAHVVKAHGRLDVLVNNAGITGFEQGAVQHDPEHARLEDWQAVHHTNLDG 121 VR +TA + + G +D+LVN AG+ G + + E+W+A N G Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGV--LRPGLIHSLSD----EEWEATFSVNSTG 119 Query: 122 VFLGCKYAIRAMRHTETGSIINISSRSGLVGIPGAAAYASSKAAVRNHTKTVALYCAEQG 181 VF + + M +GSI+ + S V AAYASSKAA TK + L AE Sbjct: 120 VFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYN 179 Query: 182 LKVRCNSIHPAAILTPIWEPMLGADAGREERMAALVRD----TPLRRFGMPEEVAAVALL 237 +RCN + P + T + + + G E+ + + PL++ P ++A L Sbjct: 180 --IRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLF 237 Query: 238 LATDEATYITGSEFNIDGGLLAG 260 L + +A +IT +DGG G Sbjct: 238 LVSGQAGHITMHNLCVDGGATLG 260
>CABNDNGRPT#NodO calcium binding signature. Length = 479 Score = 90.8 bits (225), Expect = 1e-21 Identities = 53/151 (35%), Positives = 73/151 (48%), Gaps = 12/151 (7%) Query: 354 LAGGDKSEKLYGYWGNDTLAGGAGNDILEGNAGDDVLTGGLGADKLTGGTGNDRFVFTSS 413 +A G E G GND L G + ++IL+G AG+DVL GG GAD L GG G D FV+ S Sbjct: 334 IAHGVTIENAIGGSGNDILVGNSADNILQGGAGNDVLYGGAGADTLYGGAGRDTFVYGSG 393 Query: 414 ADSHAGSSDLITDFIWGQDKLDVAALGVTGFGNGRD-------GTLSMTYDENTDRTYLR 466 DS + D I DF G DK+D++A G + + + +D T L Sbjct: 394 QDSTVAAYDWIADFQKGIDKIDLSAFRNEGQLSFVQDQFTGKGQEVMLQWDAANSITNLW 453 Query: 467 SREPGADGHAFQVTLVGFDYTRELTNADLVV 497 E G F V +VG + +D++V Sbjct: 454 LHEAGHSSVDFLVRIVG-----QAAQSDIIV 479 Score = 75.4 bits (185), Expect = 1e-16 Identities = 45/149 (30%), Positives = 62/149 (41%), Gaps = 15/149 (10%) Query: 184 INGTSQSNLLVGTDGSETLKAGAGRDTVEAGADNDRLFGGAGGDTLSGGAGADTFVYTRL 243 I +G G++ L + + ++ GA ND L+GGAG DTL GGAG DTFVY Sbjct: 334 IAHGVTIENAIGGSGNDILVGNSADNILQGGAGNDVLYGGAGADTLYGGAGRDTFVYGSG 393 Query: 244 SDSYRNDASGSYSSRDLITDFSGNGHDMIDVSALGFTGLGN-------GYNGTLKAVLNL 296 DS ++ D I DF D ID+SA G + G + + Sbjct: 394 QDST-------VAAYDWIADFQKGI-DKIDLSAFRNEGQLSFVQDQFTGKGQEVMLQWDA 445 Query: 297 AGDATALKSLEADANGNRFEILLSGNHVN 325 A T L EA + F + + G Sbjct: 446 ANSITNLWLHEAGHSSVDFLVRIVGQAAQ 474 Score = 65.8 bits (160), Expect = 1e-13 Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 11/137 (8%) Query: 39 GTPGNDSLRGGLANELLMGGDGNDYIVSGGGNDVMVPGAGADSLSGGAGNDVFRFERISD 98 ++ GG N++L+G ++ + G GNDV+ GAGAD+L GGAG D F + D Sbjct: 336 HGVTIENAIGGSGNDILVGNSADNILQGGAGNDVLYGGAGADTLYGGAGRDTFVYGSGQD 395 Query: 99 SYINGAGESTDSISYFDPAHDILDVSALGYSHLGN-------GYGDTLHIRSEPLRGIYF 151 S + D I+ F D +D+SA + G G + ++ + I Sbjct: 396 STVAAY----DWIADFQKGIDKIDLSAFRNEGQLSFVQDQFTGKGQEVMLQWDAANSITN 451 Query: 152 LESYERDQNGHRFAVQF 168 L +E + F V+ Sbjct: 452 LWLHEAGHSSVDFLVRI 468 Score = 40.3 bits (94), Expect = 2e-05 Identities = 24/66 (36%), Positives = 27/66 (40%), Gaps = 2/66 (3%) Query: 36 IVQGTPGNDSLRGGLANELLMGGDGNDYIVSGGGNDVMVPGA--GADSLSGGAGNDVFRF 93 I+QG GND L GG + L GG G D V G G D V AD G D+ F Sbjct: 360 ILQGGAGNDVLYGGAGADTLYGGAGRDTFVYGSGQDSTVAAYDWIADFQKGIDKIDLSAF 419 Query: 94 ERISDS 99 Sbjct: 420 RNEGQL 425 Score = 36.5 bits (84), Expect = 2e-04 Identities = 34/237 (14%), Positives = 66/237 (27%), Gaps = 55/237 (23%) Query: 42 GNDSLRGGLANELLMGGDGNDYIVSGGGNDVMV------PGAGADSLSGGAGNDVFRFER 95 N + R G + D+ + + ++ G SG + N Sbjct: 260 ANMTTRTGDSVYGFNSNTDRDFYTATDSSKALIFSVWDAGGTDTFDFSGYSNNQRINLNE 319 Query: 96 ISDSYINGAGESTDSISYFDPAHDILDVSALGYSHLGNGYGDTLHIRSEPLRGIYFLESY 155 S S + G + SI++ + G G+ + Sbjct: 320 GSFSDVGG-LKGNVSIAHGV-----------TIENAIGGSGNDI---------------- 351 Query: 156 ERDQNGHRFAVQFLANSGVITDANLQPLINGTSQSNLLVGTDGSETLKAGAGRDTVEAGA 215 + NS ++ G + +++L G G++TL GAGRDT G+ Sbjct: 352 ------------LVGNSA-------DNILQGGAGNDVLYGGAGADTLYGGAGRDTFVYGS 392 Query: 216 DNDRLFGGA--GGDTLSGGAGADTFVYTRLSDSYRNDASGSYSSRDLITDFSGNGHD 270 D D G D + + ++++ + Sbjct: 393 GQDSTVAAYDWIADFQKGIDKIDLSAFRNEGQLSFVQDQFTGKGQEVMLQWDAANSI 449 Score = 33.0 bits (75), Expect = 0.003 Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 1/83 (1%) Query: 24 ATSQVSNNPIELIVQGTPGNDSLRGGLANELLMGGDGNDYIVSGG-GNDVMVPGAGADSL 82 AT + G G N+ + +G+ V G GN + G ++ Sbjct: 284 ATDSSKALIFSVWDAGGTDTFDFSGYSNNQRINLNEGSFSDVGGLKGNVSIAHGVTIENA 343 Query: 83 SGGAGNDVFRFERISDSYINGAG 105 GG+GND+ + GAG Sbjct: 344 IGGSGNDILVGNSADNILQGGAG 366
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 75.8 bits (186), Expect = 2e-18 Identities = 58/184 (31%), Positives = 81/184 (44%), Gaps = 2/184 (1%) Query: 75 PEMTIELTSPTPPAPEPPPPEPPPPPPPPPPPPEPEQPVEDPDAVEPPPKPVEKPKVEKP 134 P I +T P EPP PPP P P PEPE E P + + KP Sbjct: 46 PAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKP 105 Query: 135 KPVKKVEPVKKPTPPAPTPAAAPSPPAPPTPAPAPPAPAAPPAPVKESAAVSGLASLGNP 194 KPVKKVE K+ P + A+P P + A AA PV ++ SG +L Sbjct: 106 KPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATSKPV--TSVASGPRALSRN 163 Query: 195 PPEYPGLALRRSWEGRVILRIKVLPNGRAGAVEVTKSSGKPVLDEAAVEAVRNWKFIPAK 254 P+YP A EG+V ++ V P+GR V++ + + + A+R W++ P K Sbjct: 164 QPQYPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAKPANMFEREVKNAMRRWRYEPGK 223 Query: 255 RGDT 258 G Sbjct: 224 PGSG 227
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 38.8 bits (90), Expect = 8e-06 Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 6/59 (10%) Query: 67 EFSTIGLVIVSDDYQGKGIGRKLMELAV------GCVAPRTAVLNATLAGAPLYAKMGF 119 ++ I + V+ DY+ KG+G L+ A+ + ++ YAK F Sbjct: 88 GYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHF 146
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 28.0 bits (62), Expect = 0.028 Identities = 8/43 (18%), Positives = 14/43 (32%) Query: 55 IHQSKTADATPATPATPAMPPAAVAEAPVLAPPPLPQVSTPPQ 97 + + P P P + E P AP + + P+ Sbjct: 60 LEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPK 102
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 44.2 bits (104), Expect = 2e-08 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 2/82 (2%) Query: 37 WVAVQDDQVIGSIGLRDIGAGQAALRKMFVAAPFRGREFSVAARLLERLIEESTRKGVSE 96 ++ ++ IG I +R G A + + VA +R + V LL + IE + Sbjct: 68 FLYYLENNCIGRIKIRSNWNGYALIEDIAVAKDYRKK--GVGTALLHKAIEWAKENHFCG 125 Query: 97 VFLGTTDKFHAAHRFYEKHGFR 118 + L T D +A FY KH F Sbjct: 126 LMLETQDINISACHFYAKHHFI 147
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 29.0 bits (65), Expect = 0.039 Identities = 33/171 (19%), Positives = 58/171 (33%), Gaps = 21/171 (12%) Query: 55 LIDEGYTRGQLGVAMSAIAIAYGLSKFLMGIVSDRSNPRYFLPFGLLVSAGIMFIFGFAP 114 L+ G+ ++ A+ ++G +SDR R L L +A I AP Sbjct: 35 LVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAP 94 Query: 115 WATSSVTIMFVLLFINGWAQGMGWPPSGRTMVHWWSQKER-------GGVVSVWNVAHNV 167 + ++++ + G G +G + ER VA V Sbjct: 95 ----FLWVLYIGRIVAG-ITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPV 149 Query: 168 GGGLIGPLFLLGMGWTNDWHAAFYVPAAVALLVAVFAFATMRDTPQSVGLP 218 GGL+G HA F+ AA+ L + + ++ + P Sbjct: 150 LGGLMGGFSP---------HAPFFAAAALNGLNFLTGCFLLPESHKGERRP 191
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 46.5 bits (110), Expect = 2e-08 Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 7/103 (6%) Query: 4 TAFMITAALAAHVGAAEPFLVPIYTPTPVFPPELVKTRYAGKVRAQLWIKSDGQVREVRA 63 T+ TAA + V + + P +P R G+V+ + + DG+V V+ Sbjct: 138 TSSTATAATSKPVTSVASGPRALSRNQPQYPARAQALRIEGQVKVKFDVTPDGRVDNVQI 197 Query: 64 VES-GHPQLAAAVEQALRQWRYKPWVGTVGAPPMTTITVPVIF 105 + + V+ A+R+WRY+P P + I V ++F Sbjct: 198 LSAKPANMFEREVKNAMRRWRYEP------GKPGSGIVVNILF 234
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 39.0 bits (90), Expect = 1e-05 Identities = 34/100 (34%), Positives = 48/100 (48%), Gaps = 5/100 (5%) Query: 60 LANTPKENIRVAPGNGGLADLVAEARYFLDSILGLE---NFKRSIEDLFARLLELDRQHA 116 L T +E A G + A R+ + GL N K E + + + ++ A Sbjct: 150 LTRTAEEIGEQAVREGNINGPEAYMRFLDREMEGLTAAYNVKLFTEAISSLQIRMNTLTA 209 Query: 117 ERLALEARAEEAARARAEAEEAARRLAEEQAAQQRAIEAA 156 + ++EA A AR +A AE A+R AEEQA QQ AI AA Sbjct: 210 AKASIEAAAANKAREQAAAE--AKRKAEEQARQQAAIRAA 247
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 259 bits (662), Expect = 9e-80 Identities = 166/506 (32%), Positives = 252/506 (49%), Gaps = 48/506 (9%) Query: 185 EQALELILQKKIRVNYLLAIKQPLLEERRAQ-ALSLTGQELDHATQKDHLNYLVYYSQGD 243 ++L ++ + N L + Q + A+ L+ T +E+ ++ + Sbjct: 117 NRSLTIVGNALQQKNQKLLLNQKKITSLGAKNFLTRTAEEIGEQAVREG-------NING 169 Query: 244 PPRVQQAHEAWIQALSQTYEAKLLAESVT----LLNEQSAALSMRHAELSL--------- 290 P + + ++ L+ Y KL E+++ +N +AA + A + Sbjct: 170 PEAYMRFLDREMEGLTAAYNVKLFTEAISSLQIRMNTLTAAKASIEAAAANKAREQAAAE 229 Query: 291 ANKPASQDARQAAGIDK--------LWSVIAPAST---TTAATGIRTVATNI--AKDQLI 337 A + A + ARQ A I SV+A A+ A G ++A I A L Sbjct: 230 AKRKAEEQARQQAAIRAANTYAMPANGSVVATAAGRGLIQVAQGAASLAQAISDAIAVLG 289 Query: 338 RIATRTLGSNLVTLLAMYPQPLGDAELPP-------AVIATPLSQLNLPPHIDLHYLASV 390 R+ V ++ + + ++L LPP ++L+ +A Sbjct: 290 RVLASAPSVMAVGFASLTYSSRTAEQWQDQTPDSVRYALGMDAAKLGLPPSVNLNAVAKA 349 Query: 391 KGTLDVPHRLTSDEAGTSGAARWVATDGVEVGTKVRVRTFTYNAQNNSYE--FIRDGEST 448 GT+D+P RLT++ G + V+TDGV V V VR YNA YE Sbjct: 350 SGTVDLPMRLTNEARGNTTTLSVVSTDGVSVPKAVPVRMAAYNATTGLYEVTVPSTTAEA 409 Query: 449 PALI--WTPIARPA--DSSTSSPAGPPALPVDPGNVVTPFVPELEAYPAIDRDDPDDYIL 504 P LI WTP + P + S+++P P +PV G +TP E YP + P+D I+ Sbjct: 410 PPLILTWTPASPPGNQNPSSTTPVVPKPVPVYEGATLTPVKATPETYPGVITL-PEDLII 468 Query: 505 ISPIDSGLPNSYLLFKDPRSIPGVASGYGEAVNGVWLGDKTRAEGASIPAHIADQLRGRR 564 P DSG+ Y++F+DPR +PG A+G G+ V+G WLG ++ EGA IP+ IAD+LRG+ Sbjct: 469 GFPADSGIKPIYVMFRDPRDVPGAATGKGQPVSGNWLGAASQGEGAPIPSQIADKLRGKT 528 Query: 565 FGNFDSLRKATWIAVANDPELVKQFTQHNLEIMRDGGAPYPRLVDQAGGRTKFEIHHKKH 624 F N+ R+ WIAVANDPEL KQF +L +MRDGGAPY R +QAGGR K EIHHK Sbjct: 529 FKNWRDFREQFWIAVANDPELSKQFNPGSLAVMRDGGAPYVRESEQAGGRIKIEIHHKVR 588 Query: 625 IANGGAVYDIDNLVIMTPRQHIDHHR 650 +A+GG VY++ NLV +TP++HI+ H+ Sbjct: 589 VADGGGVYNMGNLVAVTPKRHIEIHK 614
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 60.6 bits (147), Expect = 3e-12 Identities = 72/374 (19%), Positives = 136/374 (36%), Gaps = 29/374 (7%) Query: 56 VQPMMPTLSSEFSLTAAQSS---LILSVATAMLAIGLLITGPISDRLGRKPVMVMALFCA 112 + P++P L + + ++ ++L++ M + G +SDR GR+PV++++L A Sbjct: 24 IMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGA 83 Query: 113 SLFTIASALMPSWEGVLITRALVGLSLSGLAAVAMTYLS----EEIHPTHLGLAMGLYIG 168 ++ A P + I R + G++ AVA Y++ + H G ++ Sbjct: 84 AVDYAIMATAPFLWVLYIGRIVAGIT-GATGAVAGAYIADITDGDERARHFG-----FMS 137 Query: 169 GSAVGGMSGRLIVGVMIDYVSWHAAMLVVGGLALIAAAVFWKILPAS--RNFRPRSLHPR 226 GM ++G ++ S HA L + +LP S RP Sbjct: 138 ACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREAL 197 Query: 227 SLLDGFVVQFRDAGLPLLFLTGFLLM---GAFVTLFN-YIAYRFLSAPYNLSQAVVGV-F 281 + L F + L F++ L+ + RF + +G+ Sbjct: 198 NPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRF-----HWDATTIGISL 252 Query: 282 SVVYLSGIYSSAKI-GSLADRLGRRQ-VLWAVIVMMLAGLLLTLFTPLPLVIVGVLIFTF 339 + + + A I G +A RLG R+ ++ +I +LL T + +++ Sbjct: 253 AAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLAS 312 Query: 340 GFFGAHSVASSWVGRRATTARGQAASLYLFCYYAGSSVAGTGGGVFW--HYAGWNGIGVF 397 G G ++ + + +GQ S V + WNG Sbjct: 313 GGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAASITTWNGWAWI 372 Query: 398 IGVLLLIALGVALR 411 G L + ALR Sbjct: 373 AGAALYLLCLPALR 386
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 109 bits (273), Expect = 4e-31 Identities = 75/248 (30%), Positives = 112/248 (45%), Gaps = 14/248 (5%) Query: 5 ILVTGSSRGIGRAIALRLAQAGYDLILHCRTGRSEAEAVQAEVVALGRQARVLQFDVSDR 64 +TG+++GIG A+A LA G I + E V + + A R A DV D Sbjct: 11 AFITGAAQGIGEAVARTLASQGAH-IAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDS 69 Query: 65 AACKAVLEQDVETHGAYYGVVLNAGLTRDGAFPALSDDDWDQVLRTNLDGFYNVLHPLTM 124 AA + + G +V AG+ R G +LSD++W+ N G +N Sbjct: 70 AAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRS-VS 128 Query: 125 PMIRRRTAGRIVCITSVSGLIGNRGQVNYSASKAGLIGAAKALAIELGKRKITVNCVAPG 184 + R +G IV + S + Y++SKA + K L +EL + I N V+PG Sbjct: 129 KYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPG 188 Query: 185 LIDTAM-----LDENVPVD------ELLKM-IPAQRMGTPEEVAGAVNFLMSTEASYITR 232 +T M DEN E K IP +++ P ++A AV FL+S +A +IT Sbjct: 189 STETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHITM 248 Query: 233 QVLAVNGG 240 L V+GG Sbjct: 249 HNLCVDGG 256
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 44.4 bits (105), Expect = 2e-06 Identities = 46/223 (20%), Positives = 81/223 (36%), Gaps = 54/223 (24%) Query: 596 NGDQGVASIVSLR-GMNSMA--------LLRVQAIGLEGVQLV---DRLGELNEVFAHTQ 643 NG + L G N++ L +Q +G++++ D F Sbjct: 282 NGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDT-----TPFVQLS 336 Query: 644 ISAAELKLASCVLIVLLLITPFGFGGALR-----IVALPLLAALCSLASLGWLGQPLTLF 698 I L +++V L++ + F +R +A+P+ L + A L G + Sbjct: 337 IHEVVKTLFEAIMLVFLVM--YLFLQNMRATLIPTIAVPV-VLLGTFAILAAFGYSINTL 393 Query: 699 SLFGLLLVTAISVDYAILMRE----------------------QIGGAAVSLLGTLLAAL 736 ++FG++L + VD AI++ E QI GA V + L A Sbjct: 394 TMFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVF 453 Query: 737 TTWLSFGLLAVSSTPAISNFGLSVSLGLAFSFLLA----PWAS 775 FG S+ F +++ +A S L+A P Sbjct: 454 IPMAFFG---GSTGAIYRQFSITIVSAMALSVLVALILTPALC 493 Score = 32.5 bits (74), Expect = 0.008 Identities = 34/144 (23%), Positives = 57/144 (39%), Gaps = 14/144 (9%) Query: 268 ILLLLLLAFRRWSVLLAFVPVVVGMLFGAVACVAIFG-SMHVMTLVLGSSLIGVAVDYP- 325 ++ L L R + VPVV L G A +A FG S++ +T+ IG+ VD Sbjct: 354 VMYLFLQNMRATLIPTIAVPVV---LLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAI 410 Query: 326 -----QHYLSKSWSLKPW----RSWPALRLTLPGLSLSLITSCIGYLALAWTPFPALTQI 376 + L P +S ++ L G+++ L I + Q Sbjct: 411 VVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQF 470 Query: 377 AVFSAAGLIGAYLTAVCLLPALLA 400 ++ + + + L A+ L PAL A Sbjct: 471 SITIVSAMALSVLVALILTPALCA 494 Score = 31.0 bits (70), Expect = 0.025 Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 1/47 (2%) Query: 673 IVALPLLAALCSLASLGWLGQPLTLFSLFGLLLVTAISVDYAILMRE 719 ++ +PL + L + Q ++ + GLL +S AIL+ E Sbjct: 901 MLVVPL-GIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVE 946
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 65.4 bits (159), Expect = 1e-14 Identities = 39/251 (15%), Positives = 75/251 (29%), Gaps = 43/251 (17%) Query: 23 RLGFTMMIAALIHLAVILGVGFTYVKPEQISQTLEITLATFKSEEKPKQADFLAQDDQQG 82 R + +++ IH AV+ G+ +T V I L +P +A D + Sbjct: 13 RFPWPTLLSVCIHGAVVAGLLYTSV-------HQVIELPA---PAQPISVTMVAPADLE- 61 Query: 83 SGTLDKAETLKTTELAPYQ-DTKVNKVTPPPASKPVVKQEAPKTAVATTAPSQQKTVAKR 141 A V + P P P +EAP + K + Sbjct: 62 ------------PPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVK 109 Query: 142 DEVKPEPTTKAAPTFDSSELSNEIASLEAELSTEQQLYAKRPKIHRLNAASTMRDKGAWY 201 +P+ K + P + A+ K Sbjct: 110 KVEQPKRDVKPVES-----------------RPASPFENTAPARPTSSTATAATSKPVTS 152 Query: 202 KDDWRKKVERVGNLNYPEEARRKQIYGNLRLLVSINRDGSLYEVLVLESSGQPLLDQAAQ 261 + + R YP A+ +I G +++ + DG + V +L + + ++ + Sbjct: 153 VASGPRALSRN-QPQYPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAKPANMFEREVK 211 Query: 262 RIVRLAAPFAP 272 +R + P Sbjct: 212 NAMR-RWRYEP 221
>RTXTOXINC#Gram-negative bacterial RTX toxin-activating protein C signature. Length = 170 Score = 28.3 bits (63), Expect = 0.024 Identities = 11/28 (39%), Positives = 14/28 (50%) Query: 196 IMAQGYLPAIKDGDKRILMVDGEPVPYC 223 + A LPAI+ +L D PV YC Sbjct: 30 LFAINVLPAIQANQYVLLTRDDYPVAYC 57
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 69.1 bits (169), Expect = 7e-17 Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 2/117 (1%) Query: 6 SALKVMVIDDSKTIRRTAETLLKNAGCEVITAIDGFDALAKIADNHPRIIFVDIMMPRLD 65 + ++V DD IR L AG +V + IA ++ D++MP + Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 66 GYQTCALIKNNRAFKSTPVIMLSSKDGLFDKAKGRIVGSDQFLTKPFSKEELLSAIK 122 + IK R PV+++S+++ K G+ +L KPF EL+ I Sbjct: 62 AFDLLPRIKKARPD--LPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 81.8 bits (202), Expect = 2e-21 Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 4/120 (3%) Query: 2 ARILIVDDSPTEMYKLTGMLEKHGHEVLKAENGADGVALARQEKPDAVLMDIVMPGLNGF 61 A IL+ DD L L + G++V N A D V+ D+VMP N F Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 62 QATRQLTK-DPDTTNIPVIMITTKDQDTDKVWGKRQGARDYLTKPVDEETLMKTLNAVLA 120 ++ K PD +PV++++ ++ + +GA DYL KP D L+ + LA Sbjct: 64 DLLPRIKKARPD---LPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 71.0 bits (174), Expect = 2e-14 Identities = 27/113 (23%), Positives = 56/113 (49%), Gaps = 2/113 (1%) Query: 1873 VMVVDDSVTVRKVTSRLLERHGMHVLTAKDGVDAMTLLQEHTPDIMLLDIEMPRMDGFEV 1932 ++V DD +R V ++ L R G V + + D+++ D+ MP + F++ Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 1933 ASQIRQDEQLKDLPIIMITSRSGQKHRDRAMAVGVNEYLSKPYQETVLLESIA 1985 +I+ + DLP++++++++ +A G +YL KP+ T L+ I Sbjct: 66 LPRIK--KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116
>cloacin#Cloacin signature. Length = 551 Score = 29.3 bits (65), Expect = 0.030 Identities = 14/24 (58%), Positives = 17/24 (70%) Query: 47 GGGNKRGSDGGSSGSGGGSGKGGG 70 GGG+ G+ GG+ SGGGSG GG Sbjct: 57 GGGSGHGNGGGNGNSGGGSGTGGN 80
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 30.9 bits (70), Expect = 0.008 Identities = 38/152 (25%), Positives = 72/152 (47%), Gaps = 28/152 (18%) Query: 101 LYWIIPLLIVIAIVFPIFANKYILTVVILGLIYVLLGLGLNIVVGLAGLLDLGYVAFYAI 160 L W++ L I + + ++ L ++ GL++ LLG +++ + G + GY+ +++ Sbjct: 140 LTWVLVALTFIDLDKMLLPDQLTLPLLWGGLLFNLLGGFVSLGDAVIGAM-AGYLVLWSL 198 Query: 161 -GAYGLALGYQYLG---------LGFW---SALPLAAIAAALAGCILGFPVLRMH----- 202 A+ L G + +G LG W ALP+ + ++L G +G ++ + Sbjct: 199 YWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSLVGAFMGIGLILLRNHHQS 258 Query: 203 -----GDYLAI---VTLGFGE-IIRLVLNNWL 225 G YLAI + L +G+ I R L N+L Sbjct: 259 KPIPFGPYLAIAGWIALLWGDSITRWYLTNFL 290
>PF05272#Virulence-associated E family protein Length = 892 Score = 33.9 bits (77), Expect = 8e-04 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 9/68 (13%) Query: 37 LIGPNGAGKTTVFNCLTGFYKATGGRIELHTRGKTT------NVIKLLGE--PFQATDFV 88 L G G GK+T+ N L G + ++ T GK + V L E F+ D Sbjct: 601 LEGTGGIGKSTLINTLVGLDFFSDTHFDIGT-GKDSYEQIAGIVAYELSEMTAFRRADAE 659 Query: 89 SPKSFLSR 96 + K+F S Sbjct: 660 AVKAFFSS 667
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 83.2 bits (205), Expect = 4e-21 Identities = 59/243 (24%), Positives = 100/243 (41%), Gaps = 14/243 (5%) Query: 5 VFITGATSGFGEACARRFAEAGWSLVLTGRRKDRLDTLSAELSKQTKV-HTLVLDVRDRK 63 FITGA G GEA AR A G + ++L+ + + L + + DVRD Sbjct: 11 AFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDSA 70 Query: 64 AMESAIAGLPEEFGSIRGLINNAGLALGIDPAPKCDLDDWDTMIDTNVKGLVYTTRLLLP 123 A++ A + E G I L+N AG+ L ++W+ N G+ +R + Sbjct: 71 AIDEITARIEREMGPIDILVNVAGV-LRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSK 129 Query: 124 RLIAHGRGASIVNLGSVAGNYPYLGGNVYGGTKAFVGQFSLNLRNDLIGTGVRVTNLEPG 183 ++ R SIV +GS P Y +KA F+ L +L +R + PG Sbjct: 130 YMMDR-RSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPG 188 Query: 184 LCESEFSLV----------RFGGDQAKYDATYAGAEPIQPQDIADTIFWIMNTPA-HVNI 232 E++ G + + +P DIAD + ++++ A H+ + Sbjct: 189 STETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHITM 248 Query: 233 NSL 235 ++L Sbjct: 249 HNL 251
>FLGHOOKFLIK#Flagellar hook-length control protein signature. Length = 375 Score = 29.0 bits (64), Expect = 0.030 Identities = 34/135 (25%), Positives = 47/135 (34%), Gaps = 9/135 (6%) Query: 179 LYEAQLAEDWSVLGTGPLQNPLMHLAEAFLAALSVRADPA-TQAALDALVIHMQRRFVDT 237 L QL G PL L + V + P+ AA L+ Q + + T Sbjct: 166 LTSEQLTTAQPDDAPGTPAQPLTPLVAEAQSKAEVISTPSPVTAAASPLITPHQTQPLPT 225 Query: 238 ATGVMLEKPLGAVDNWYEPGHQFEWFFLLQSSP----ELHGREL---HESMTRAFAYAQA 290 +L PLG+ W + Q F Q LH ++L S+ AQ Sbjct: 226 VAAPVLSAPLGS-HEWQQSLSQHISLFTRQGQQSAELRLHPQDLGEVQISLKVDDNQAQI 284 Query: 291 QGVDPHSGAVTAMLA 305 Q V PH A+ A Sbjct: 285 QMVSPHQHVRAALEA 299
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 85.1 bits (210), Expect = 9e-21 Identities = 59/255 (23%), Positives = 108/255 (42%), Gaps = 16/255 (6%) Query: 212 LAGLKAVVTGAARGIGASIAETLTRDGAQVILLDVPQTKNELEALASRLGG---QALALD 268 + G A +TGAA+GIG ++A TL GA + +D K E + + +A D Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 269 ICAADAPAQLLEHLP---DGVDILVHNAGITRDKTLVNMPEDFWDSVLAVNLSAPQVLTQ 325 + + A ++ + +DILV+ AG+ R + ++ ++ W++ +VN + ++ Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 326 VLLDAGALKDNARIVLMASISGIAGNRGQTNYTTSKAGLIGFARAMAPGLKSRGISINAV 385 + + + IV + S Y +SKA + F + + L I N V Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 386 APGFIETKMTAHMPFTLREAGRRMSS----------LGQGGSPQDVAEAVAWFSQPGSGA 435 +PG ET M + A + + L + P D+A+AV + +G Sbjct: 186 SPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGH 245 Query: 436 VSGQVLRVCGQNVIG 450 ++ L V G +G Sbjct: 246 ITMHNLCVDGGATLG 260
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 69.1 bits (169), Expect = 7e-15 Identities = 37/152 (24%), Positives = 60/152 (39%), Gaps = 1/152 (0%) Query: 12 LSAFGPLAIDFYLPGFPAMASYFGTDEKHVQLTLAAYFLGLSLGQLAYGPVADRFGRRIP 71 LS F L P +A+ F A+ L S+G YG ++D+ G + Sbjct: 22 LSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRL 81 Query: 72 LLVGVTLFMLASVACAFAPS-LEWLIAARFVQALGGCAGMVLSRAIVSDKCNAVESAKVF 130 LL G+ + SV S LI ARF+Q G A L +V+ K F Sbjct: 82 LLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAF 141 Query: 131 SQLMLVMGLAPILAPMLGGVLVSTFGWQSIFV 162 + ++ + + P +GG++ W + + Sbjct: 142 GLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLL 173
>SUBTILISIN#Subtilisin serine protease family (S8) signature. Length = 326 Score = 32.5 bits (74), Expect = 0.002 Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 5/91 (5%) Query: 114 AGITGALKDGKSKLGVDSGLILSFLRHLSQEEAEKTLDQALPFRDAFVAVGLD--SSEMG 171 AG A ++ +GV L ++ L+++ + + A + +D S +G Sbjct: 91 AGTIAATENENGVVGVAPEADLLIIKVLNKQGSGQYDWIIQGIYYA-IEQKVDIISMSLG 149 Query: 172 HPPS--KFQRVFDRARNEGFLTVAHAGEEGP 200 P + +A L + AG EG Sbjct: 150 GPEDVPELHEAVKKAVASQILVMCAAGNEGD 180
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 71.5 bits (175), Expect = 2e-16 Identities = 58/252 (23%), Positives = 97/252 (38%), Gaps = 36/252 (14%) Query: 41 TPKRVVVLEFSFLDGLASVGVTPVGAADDGDANR--VLPKVRKAVGEWQSVGLRSQPNIE 98 P R+V LE+ ++ L ++G+ P G AD + P + +V + VGLR++PN+E Sbjct: 34 DPNRIVALEWLPVELLLALGIVPYGVADTINYRLWVSEPPLPDSVID---VGLRTEPNLE 90 Query: 99 VIARLKPDLIIADLGRHQALYNDLASLAPTLMLPSRGEDYQGSLKSAELIGVALGKGPQM 158 ++ +KP ++ G + LA +AP G A +L + + Sbjct: 91 LLTEMKPSFMVWSAG-YGPSPEMLARIAPGRGFNFS----DGKQPLAMARK-SLTEMADL 144 Query: 159 QARIAENRQHLKTVAEQIPANSN----------VLFGVAREDSFSVHGPHSYAGSVLQAI 208 + HL + I + +L + V GP+S +L Sbjct: 145 LNLQSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEILDEY 204 Query: 209 GLKVPEVRKNAAPTEF-------VSLEQLLAL-DPGWLLVGHYRRPSIVDSWSKQPLWQV 260 G+ NA E VS+++L A D L H +D+ PLWQ Sbjct: 205 GI------PNAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDH-DNSKDMDALMATPLWQA 257 Query: 261 LGAVRNKQVAEV 272 + VR + V Sbjct: 258 MPFVRAGRFQRV 269
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 48.1 bits (114), Expect = 8e-09 Identities = 47/201 (23%), Positives = 79/201 (39%), Gaps = 33/201 (16%) Query: 18 KTALIIGASRGLGLGLVQRLTEQGWHVTATVRDPQNAENLKAVEGVRIEA-------VDL 70 K A I GA++G+G + + L QG H+ A D + K V ++ EA D+ Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAV--DYNPEKLEKVVSSLKAEARHAEAFPADV 66 Query: 71 DETASLEVLVQKLRGEV--FDVLFVNAGI--TGAEHQSAAKSTAAELGQLFLTNAVAPIR 126 ++A+++ + ++ E+ D+L AG+ G H + + E F N+ Sbjct: 67 RDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDE----EWEATFSVNSTGVFN 122 Query: 127 LAERFVDQLRPGTGVLAFMSSWLGSVTC--PDGAN-----LALYKASKAALNSMTNTFVT 179 + + GS+ + A +A Y +SKAA T Sbjct: 123 ASRSVSKYMMDRRS---------GSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGL 173 Query: 180 ELGENRPTVLSMHPGWVKTDM 200 EL E + PG +TDM Sbjct: 174 ELAEYNIRCNIVSPGSTETDM 194
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 28.7 bits (64), Expect = 0.031 Identities = 10/15 (66%), Positives = 12/15 (80%), Gaps = 1/15 (6%) Query: 126 IPLLSDIPLIGRMLF 140 +PLL DIP+IG LF Sbjct: 560 VPLLGDIPVIGA-LF 573
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 31.2 bits (70), Expect = 0.011 Identities = 32/138 (23%), Positives = 53/138 (38%), Gaps = 36/138 (26%) Query: 314 EFERQLKGQEDGLNRLTV--------EEYLKNIANPVKRDAMAA------KKARTDLKDT 359 E E++L+ + N++ +E I RDA A K + +L D Sbjct: 627 EVEKKLESKSGNKNKMEAKAQANSQKDEIFALINKEANRDARAIAYAQNLKGIKRELSDK 686 Query: 360 LQE--RFQREFQKEMSPL-DAEEAAIKKARETMASLAGLHNPDLTAGGKDIIADFGDRQV 416 L+ + ++F K + + KA ET+ +L K + D G Sbjct: 687 LENVNKNLKDFDKSFDEFKNGKNKDFSKAEETLKAL------------KGSVKDLG---- 730 Query: 417 NSSIGPQWRPKIQNLKAA 434 I P+W K++NL AA Sbjct: 731 ---INPEWISKVENLNAA 745
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 51.9 bits (124), Expect = 2e-10 Identities = 18/107 (16%), Positives = 44/107 (41%), Gaps = 7/107 (6%) Query: 23 MGSSKADKATSHDRIINVAAAQIRRSGINGIGVADLMQEAGLTHGGFYRHFESRDELVTA 82 +K + + I++VA + G++ + ++ + AG+T G Y HF+ + +L + Sbjct: 2 ARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61 Query: 83 AVERALAQGSARTVATCGQGG-------RRALEAIIDDYLSPAHRAL 122 E + + + + R L +++ ++ R L Sbjct: 62 IWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRL 108
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 94.6 bits (235), Expect = 5e-23 Identities = 92/461 (19%), Positives = 186/461 (40%), Gaps = 36/461 (7%) Query: 21 WMCLAILLVGSFLPPLDYFIINIALPFIKADLRASDGMMQASVSIYAAAFALFLILGGRL 80 W+C+ SF L+ ++N++LP I D + + F++ + G+L Sbjct: 18 WLCIL-----SFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKL 72 Query: 81 GDSYGARRTFIVGMLGFAFASAACGMAGSDL-VLVVGRFVQGLFAAIMAPQSLALIHANF 139 D G +R + G++ F S + S +L++ RF+QG AA P + ++ A + Sbjct: 73 SDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAA-AFPALVMVVVARY 131 Query: 140 IG-KDKALALSLYASIFGLACLVGQGAGGLLIEANIGGLSWRSLFLINLPVVLLCLLAAV 198 I +++ A L SI + VG GG++ + W +L+ +P++ + + + Sbjct: 132 IPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHY----IHWS--YLLLIPMITIITVPFL 185 Query: 199 RLLTESTLQQSKYIDIRGCALFAGFLLPLLACLIEAAPRGWPWWSWLALTLSAFCLKLFV 258 L + ++ + DI+G L + ++ + +S L +S +FV Sbjct: 186 MKLLKKEVRIKGHFDIKGIILMSVGIVFFML--------FTTSYSISFLIVSVLSFLIFV 237 Query: 259 TWENQLKRGGRAPFVDLAIFNLPPLLPGVL-ALFCFYAISPFFLIYADFLQSGFQLSPAA 317 ++ PFVD + P + GVL F ++ F + ++ QLS A Sbjct: 238 KHIRKVTD----PFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAE 293 Query: 318 VGARIL-PFGIGFFIAALSSAFLGQRQGKRGAMLGLSLQAASMLSVVMCICGGRPDLLYL 376 +G+ I+ P + I L R+G + + + + + Sbjct: 294 IGSVIIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTI 353 Query: 377 PLILLGAGQGFALPAMVGVVSDTLNRHHPGMSSGLINTVLQCSSAFFVASVGGVF---FG 433 ++ + G F + +VS +L + G L+N S +A VGG+ Sbjct: 354 IIVFVLGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSIPLL 413 Query: 434 VKNAIPGIIG-----LSDALVAATSLILVCQLLALLLIRIS 469 + +P + S+ L+ + +I++ L+ L + + S Sbjct: 414 DQRLLPMEVDQSTYLYSNLLLLFSGIIVISWLVTLNVYKHS 454
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 344 bits (885), Expect = e-122 Identities = 161/283 (56%), Positives = 200/283 (70%), Gaps = 1/283 (0%) Query: 3 LLDLLASSPLAFVTTCCILGLIIGSFLNVIVYRLPIMMERDWKAQSRELLGLPAE-PDQP 61 LL+L P + + + L+IGSFLNV+++RLPIM+ER+W+A+ R E D+P Sbjct: 4 LLELAHGLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRSYFNPDDEGVDEP 63 Query: 62 VFNLNRPRSSCPHCAHKIRPWENLPVISYLLLRGKCSQCKAPISKRYPLVELTCAVLSAY 121 +NL PRS CPHC H I EN+P++S+L LRG+C C+APIS RYPLVEL A+LS Sbjct: 64 PYNLMVPRSCCPHCNHPITALENIPLLSWLWLRGRCRGCQAPISARYPLVELLTALLSVA 123 Query: 122 VAWHFGFGWQATAMLVLGWGLLAMSLIDADHQLLPDSLVLPLLWLGLIVNAFGLFTSLND 181 VA GW A L+L W L+A++ ID D LLPD L LPLLW GL+ N G F SL D Sbjct: 124 VAMTLAPGWGTLAALLLTWVLVALTFIDLDKMLLPDQLTLPLLWGGLLFNLLGGFVSLGD 183 Query: 182 ALWGAVAGYLALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSLVGA 241 A+ GA+AGYL LWS++W FKL+TGKEGMGYGDFKLLA LGAW GWQ LP+ +LLSSLVGA Sbjct: 184 AVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSLVGA 243 Query: 242 VLGVIMMRVRRVESGTPIPFGPYLAIAGWIALLWGGQITDSYM 284 +G+ ++ +R PIPFGPYLAIAGWIALLWG IT Y+ Sbjct: 244 FMGIGLILLRNHHQSKPIPFGPYLAIAGWIALLWGDSITRWYL 286
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 432 bits (1113), Expect = e-153 Identities = 118/404 (29%), Positives = 219/404 (54%), Gaps = 10/404 (2%) Query: 11 YTWEGVDKKGTKTSGELSGHNLALVKAQLRKQGINPTKVRKKSVSI---------FGKGK 61 Y ++ +D +G K G + + LR++G+ P V + + Sbjct: 4 YHYQALDAQGKKCRGTQEADSARQARQLLRERGLVPLSVDENRGDQQKSGSTGLSLRRKI 63 Query: 62 KIKPLDIAFFSRQMATMMKAGVPLLQSFDIISEGAENPNMRALVGSLKQEVSAGNSFATA 121 ++ D+A +RQ+AT++ A +PL ++ D +++ +E P++ L+ +++ +V G+S A A Sbjct: 64 RLSTSDLALLTRQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSLADA 123 Query: 122 LRQKPEYFDDLFCNLVDAGEQAGALESLLDRVASYKEKTEKLKAKIKKAMTYPIAVLIVA 181 ++ P F+ L+C +V AGE +G L+++L+R+A Y E+ ++++++I++AM YP + +VA Sbjct: 124 MKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVLTVVA 183 Query: 182 LIVSGILLIKVVPQFQSVFASFGAQLPTFTLMVIGLSDVVQKWWLAIVGLFFVSFFIFKR 241 + V ILL VVP+ F LP T +++G+SD V+ + ++ F F+ Sbjct: 184 IAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLALLAGFMAFRV 243 Query: 242 AYKQSQKFRDSLDRLLLKVPIIGPLIFKSSVARYARTLATTFAAGVPLVEALDSVAGATG 301 +Q K R S R LL +P+IG + + ARYARTL+ A+ VPL++A+ Sbjct: 244 MLRQE-KRRVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAMRISGDVMS 302 Query: 302 NVVFKNAVIKVKQDVSTGMQLNFSMRSTGVFPSLAIQMTAIGEESGALDTMLDKVATYYE 361 N ++ + V G+ L+ ++ T +FP + M A GE SG LD+ML++ A + Sbjct: 303 NDYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMIASGERSGELDSMLERAADNQD 362 Query: 362 DEVDNMVDNLTSLMEPMIMAFLGVIVGGLVIAMYLPIFQLGNVV 405 E + + L EP+++ + +V +V+A+ PI QL ++ Sbjct: 363 REFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPILQLNTLM 406
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 29.5 bits (66), Expect = 0.009 Identities = 13/33 (39%), Positives = 25/33 (75%), Gaps = 4/33 (12%) Query: 316 LLVVVVVLIIGIVASLLFP----GKDESAEEKA 344 L ++VV++IIG++ASL+ P K+++ ++KA Sbjct: 13 LEIMVVIVIIGVLASLVVPNLMGNKEKADKQKA 45
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 30.9 bits (69), Expect = 0.007 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%) Query: 3 QPKPSGLPAQ-AAPTPAPASVPARRPSFTPDPN 34 QP P PA+ A PAP P RP+ PDP+ Sbjct: 326 QPLPEVSPAENPANNPAPNENPGTRPNPEPDPD 358
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 607 bits (1566), Expect = 0.0 Identities = 224/563 (39%), Positives = 348/563 (61%), Gaps = 13/563 (2%) Query: 405 LQAVSASPGIAMGPAHVQVLQSFDYPQR-GESVAAERERLHKAIGEVRSDIENLIQRSK- 462 + ++AS G+A+ A + + + D + V+ E E+L A+ + + ++ + +++ Sbjct: 5 ITGIAASSGVAIAKAFIHLEPNVDIEKTSITDVSTEIEKLTAALEKSKEELRAIKDQTEA 64 Query: 463 --SKAIREIFITHQEMLEDPELTSEVEARLNNDE-SAAAAWATVIETAAVQQEQLQDALL 519 EIF H +L+DPEL ++ ++ N++ +A A V + E + + + Sbjct: 65 SMGADKAEIFAAHLLVLDDPELVDGIKGKIENEQMNAEYALKEVSDMFVSMFESMDNEYM 124 Query: 520 AERAADLRDVGRRVLAQICGVET--VAAPDEPYILVMDEVGPSDVARLDPAQVAGILTAR 577 ERAAD+RDV +RVL + GVET +A E +++ +++ PSD A+L+ V G T Sbjct: 125 KERAADIRDVSKRVLGHLIGVETGSLATIAEETVIIAEDLTPSDTAQLNKQFVKGFATDI 184 Query: 578 GGATAHSAIVARALGIPALVGAGDEVLLLKPGTVLLLDSQRGRLTVAPDEATLQRAVQDR 637 GG T+HSAI++R+L IPA+VG + ++ G ++++D G + V P E ++ + R Sbjct: 185 GGRTSHSAIMSRSLEIPAVVGTKEVTEKIQHGDMVIVDGIEGIVIVNPTEEEVKAYEEKR 244 Query: 638 DAREQRLKAAAAARMEPAVTRDGHAVEVFANIGDSTGTPAAVEQGAEGVGLLRTELLFMA 697 A E++ + A EP+ T+DG VE+ ANIG + G EG+GL RTE L+M Sbjct: 245 AAFEKQKQEWAKLVGEPSTTKDGAHVELAANIGTPKDVDGVLANGGEGIGLYRTEFLYMD 304 Query: 698 HSQAPDEATQEAEYRRVLTDLGGRPLVVRTLDVGGDKPLPYWPIAKEENPFLGVRGIRLT 757 Q P E Q Y+ V+ + G+P+V+RTLD+GGDK L Y + KE NPFLG R IRL Sbjct: 305 RDQLPTEEEQFEAYKEVVQRMDGKPVVIRTLDIGGDKELSYLQLPKELNPFLGFRAIRLC 364 Query: 758 LQRPDVMESQLRALLRSADSGPLRIMFPMIGTLEEWRQARDMTQRLREE-----IPVSD- 811 L++ D+ +QLRALLR++ G L++MFPMI TLEE RQA+ + Q +++ + VSD Sbjct: 365 LEKQDIFRTQLRALLRASTYGNLKVMFPMIATLEELRQAKAIMQEEKDKLLSEGVDVSDS 424 Query: 812 LQLGIMIEVPSAALIAPVLAKEVDFFSIGTNDLTQYTMAIDRGHPTLSAQADGLHPSVLQ 871 +++GIM+E+PS A+ A + AKEVDFFSIGTNDL QYTMA DR + +S HP++L+ Sbjct: 425 IEVGIMVEIPSTAVAANLFAKEVDFFSIGTNDLIQYTMAADRMNERVSYLYQPYHPAILR 484 Query: 872 LIDMTVRAAHANGKWVGVCGELAADPLAVPILVGLGVDELSVSARSIGEVKACVRELTLS 931 L+DM ++AAH+ GKWVG+CGE+A D +A+P+L+GLG+DE S+SA SI ++ + +L+ Sbjct: 485 LVDMVIKAAHSEGKWVGMCGEMAGDEVAIPLLLGLGLDEFSMSATSILPARSQLLKLSKE 544 Query: 932 SARELAQNALTAGSAAEVRALVE 954 + AQ AL +A EV LV+ Sbjct: 545 ELKPFAQKALMLDTAEEVEQLVK 567
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 34.9 bits (80), Expect = 5e-05 Identities = 24/137 (17%), Positives = 46/137 (33%), Gaps = 13/137 (9%) Query: 4 IVRAMADSDWSSLAVMFEQPVFRWWTLRMPHQSINDVKKLVESRSASGLSL-VAECDGMV 62 ++ A + W+ F +P F+ D V G + + + Sbjct: 26 MIPAFENGVWTYTEERFSKPYFK---------QYEDDDMDVSYVEEEGKAAFLYYLENNC 76 Query: 63 VGCAMLYRFQGRRQHVADFWMGVADSHHRQGIGDLLLSELTATASRWMNLKRLELTVFVD 122 +G + + D + VA + ++G+G LL ++ + L L Sbjct: 77 IGRIKIRSNWNGYALIED--IAVAKDYRKKGVGTALL-HKAIEWAKENHFCGLMLETQDI 133 Query: 123 NKPAIALYEKNGFVIEG 139 N A Y K+ F+I Sbjct: 134 NISACHFYAKHHFIIGA 150
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 104 bits (259), Expect = 3e-25 Identities = 95/322 (29%), Positives = 139/322 (43%), Gaps = 31/322 (9%) Query: 242 AEQARVAVEAEAKRVADEQALLAAEAEARRVAAEAAEQARMEAETQAQRDVDEHARVTAE 301 A ++ EA + L AA+A + A AA +AR +A +A+R +E AR + Sbjct: 187 AYNVKLFTEAISSLQIRMNTLTAAKAS---IEAAAANKAREQAAAEAKRKAEEQAR---Q 240 Query: 302 AQALEAGKTLRLPEAGTPQLGAVAGVISVTAGSGLFLDATIQAAIEILTALAGTAVSSTT 361 A+ A T +P G+ A + A L I AI +L + +A S Sbjct: 241 QAAIRAANTYAMPANGSVVATAAGRGLIQVAQGAASLAQAISDAIAVLGRVLASA-PSVM 299 Query: 362 AVGIGTLLYS-------PSLGNGELPERMLDLPARVLMPDLPDALNDVAATGGTVDMPYR 414 AVG +L YS + L + A L LN VA GTVD+P R Sbjct: 300 AVGFASLTYSSRTAEQWQDQTPDSV-RYALGMDAAKLGLPPSVNLNAVAKASGTVDLPMR 358 Query: 415 IY----GDQSKYSVVATQAEGGFSPKVPVRALILDPVANAYTFT----TSDTPPITLTFP 466 + G+ + SVV+T VPVR + Y T T++ PP+ LT+ Sbjct: 359 LTNEARGNTTTLSVVSTDGVS-VPKAVPVRMAAYNATTGLYEVTVPSTTAEAPPLILTWT 417 Query: 467 IAAPG---NSSTTTVAQPVEIPAYAGITLEPIEVKAEPLPATGQMDIRDAIYVYPLNSGL 523 A+P N S+TT P +P Y G TL P++ E P + D I +P +SG+ Sbjct: 418 PASPPGNQNPSSTTPVVPKPVPVYEGATLTPVKATPETYPGVITLP-EDLIIGFPADSGI 476 Query: 524 PPVYAVFNSPYE---GATTKGE 542 P+Y +F P + AT KG+ Sbjct: 477 KPIYVMFRDPRDVPGAATGKGQ 498
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 79.9 bits (197), Expect = 9e-19 Identities = 39/168 (23%), Positives = 65/168 (38%), Gaps = 8/168 (4%) Query: 1 MSTLALLICDDSNMARKQLLRALPEDWDVSVTLATQGQEGLEAIRKGQGQVVLLDLTMPV 60 M+ +L+ DD R L +AL V + + I G G +V+ D+ MP Sbjct: 1 MTGATILVADDDAAIRTVLNQAL-SRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPD 59 Query: 61 MDGYQTLTAIRDENLDAKVIVVSGDVQDEAVRRVMELGALAFLKKPADPDELKSTLERLG 120 + + L I+ D V+V+S + E GA +L KP D EL + R Sbjct: 60 ENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR-- 117 Query: 121 LLGKPAASPVALPALNNKGGVI-----SFQDAFRETVNVAMGRAAALL 163 L +P P L + G + + Q+ +R + ++ Sbjct: 118 ALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMI 165
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 102 bits (255), Expect = 3e-27 Identities = 68/313 (21%), Positives = 116/313 (37%), Gaps = 45/313 (14%) Query: 7 RALITGINGFTGRFMANELAAQGCEVLGVGS--------------QPSDSPGY--YQVDL 50 + L+TG GF G ++ L G +V+G+ + + PG+ +++DL Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 51 ADVAGLRKLLADTQPDIVVHLAALAFVGHGAAD--AFYQVNLIGTRNLLEAIDACGKVPD 108 AD G+ L A + V V + + A+ NL G N+LE Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNK--IQ 119 Query: 109 CVLLASSANVYG-NASSGMLDETTPPAPANDYAVSKLAMEYMASLWHA--RLPIVIARPF 165 +L ASS++VYG N + + P + YA +K A E MA + LP R F Sbjct: 120 HLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFF 179 Query: 166 NYTGVGQAENFLLPKIVSHFARKASTIEL-GNLDVWRDFSDVRAVVSAYRGLLEVCPVGQ 224 G + L K + +I++ + RDF+ + + A L +V P Sbjct: 180 TVYGPWGRPDMALFKFTKAM-LEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPHAD 238 Query: 225 T------------------INVSSGVTHSLREVIDMCRDITGQDIDVQVNPAFVRANEVK 266 T N+ + L + I D G + + P ++ +V Sbjct: 239 TQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLP--LQPGDVL 296 Query: 267 TLCGNNARLRALV 279 + L ++ Sbjct: 297 ETSADTKALYEVI 309
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 110 bits (277), Expect = 7e-30 Identities = 74/350 (21%), Positives = 128/350 (36%), Gaps = 57/350 (16%) Query: 1 MKAIITGITGQDGAYLAELLLEKGYTVYG-----TYRRTSSVNFWRIEELGIQNNPNLHL 55 MK ++TG G G ++++ LLE G+ V G Y S + R+E L P Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVS-LKQARLELLA---QPGFQF 56 Query: 56 VEYDLTDLSASIRLLQTTGATEVYNLAAQSFVGVSFEQPLTTAEITGIGAVNLLEAIRIV 115 + DL D L + V+ + V S E P A+ G +N+LE R Sbjct: 57 HKIDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHN 116 Query: 116 NTKIRFYQASTSEMFGKVQAIPQVESTPF-YPRSPYGVAKLYAHWMTINYRESYDIFATS 174 + AS+S ++G + +P +P S Y K M Y Y + AT Sbjct: 117 KIQ-HLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATG 175 Query: 175 GILFNHESPLRGR-EFVTRKITDSVAKIKLGLIESFELGNMDAKRDWGFAKEYVEGMWRM 233 F P GR + K T ++ + K I+ + G M KRD+ + + E + R+ Sbjct: 176 LRFFTVYGP-WGRPDMALFKFTKAMLEGK--SIDVYNYGKM--KRDFTYIDDIAEAIIRL 230 Query: 234 LQADEPDT-------------------FVLATNRTETVRDFVSMAFKATGVTIKWEGEAE 274 + + + + D++ A G+ K Sbjct: 231 QDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAK------ 284 Query: 275 SEKGICADTGKVLVSVNPKFYRPTEVELLIGNPAKAKEVLGWEPKTNLEE 324 K ++ + +P +V + EV+G+ P+T +++ Sbjct: 285 ----------KNMLPL-----QPGDVLETSADTKALYEVIGFTPETTVKD 319
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 41.2 bits (96), Expect = 1e-05 Identities = 34/243 (13%), Positives = 80/243 (32%), Gaps = 17/243 (6%) Query: 260 AELREQLNQVQQRGQELEQIVRALEESGTATETELREQLNQVQQRGQELEQIVRALEESG 319 + +E+L + + E + A + +L + L ++ L Sbjct: 95 SNAKEKLRKNDKSLSEKAS----KIQELEARKADLEKALEGAMNFSTADSAKIKTL---- 146 Query: 320 AATETELRQQLNQVQQRGQELEQIARTLEESGAATHAELRDQLSHVQEQGKHLESSVHAL 379 E E + + LE +A L + + ++ + LE ++ Sbjct: 147 ---EAEKAALAARKADLEKALEGAMNFSTAD-SAKIKTLEAEKAALEARQAELEKALEGA 202 Query: 380 QN-NDEVEARIREVTLRAELAESRVHSFQLGQEAAQLRMNESEARLNEAFSYLKELQAQV 438 N + A+I+ + +R + E A A++ + L+A+ Sbjct: 203 MNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQ 262 Query: 439 TQLQQDTGVTKVTDAVSAQARVDELQARLKESLDNAHHWWLKANENQVEQAQMHEIQAQL 498 +L++ + + + A++ L+A +++QV A ++ L Sbjct: 263 AELEKALEG-AMNFSTADSAKIKTLEAEKAALEAEKAD---LEHQSQVLNANRQSLRRDL 318 Query: 499 DQS 501 D S Sbjct: 319 DAS 321 Score = 33.9 bits (77), Expect = 0.002 Identities = 25/151 (16%), Positives = 53/151 (35%), Gaps = 2/151 (1%) Query: 252 VEKSDATCAELREQLNQVQQRGQELEQIVRALEESGTATETELREQLNQVQQRGQELEQI 311 T + L + ++ + + +A L + ++ R ELE+ Sbjct: 209 DSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKA 268 Query: 312 VRALEESGAATETELRQQLNQVQQRGQELEQIARTLEESGAATHAELRDQLSHVQEQGKH 371 + A +++ + E + + A + LR L +E K Sbjct: 269 LEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQS-LRRDLDASREAKKQ 327 Query: 372 LESSVHALQNNDEVEARIREVTLRAELAESR 402 LE+ L+ +++ R+ +LR +L SR Sbjct: 328 LEAEHQKLEEQNKISEASRQ-SLRRDLDASR 357
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 42.8 bits (101), Expect = 7e-07 Identities = 43/201 (21%), Positives = 70/201 (34%), Gaps = 34/201 (16%) Query: 1 MKILLLGKNGQVGWELQRALAPLG-EVIALD----------------RQGADGLC---GD 40 MK L+ G G +G+ + + L G +V+ +D G D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 41 LADLERLAATVRALAPDVIVNAAAYTAVDKAESEPDLAMLIN--GEAPGVLAKEAAALGA 98 LAD E + + + + + AV + P N G + + Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 99 WLIHYSTDYVFDGSGEQQWRE-DAATGPLSVYGGSKLMGE-QAIQAS---GAKALILRTS 153 L++ S+ V+ + + + D+ P+S+Y +K E A S G A LR Sbjct: 121 -LLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFF 179 Query: 154 WVYAARG------HNFAKTML 168 VY G F K ML Sbjct: 180 TVYGPWGRPDMALFKFTKAML 200
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 185 bits (472), Expect = 5e-58 Identities = 89/358 (24%), Positives = 143/358 (39%), Gaps = 43/358 (12%) Query: 2 ILVTGGAGFIGSNFVLQWCARNGEPVLNLDALT--YAGNL--ANLQSLEGNEQHRFVHGN 57 LVTG AGFIG + + G V+ +D L Y +L A L+ L +F + Sbjct: 3 YLVTGAAGFIGFHVSKRLLEA-GHQVVGIDNLNDYYDVSLKQARLELL-AQPGFQFHKID 60 Query: 58 IGDAALLDRLFAEHRPRAVVHFAAESHVDRSITGPEAFVETNVMGTFRLLEAARAYWNGL 117 + D + LFA V V S+ P A+ ++N+ G +LE R N + Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRH--NKI 118 Query: 118 EADDKAAFRFLHVSTDEVYGTLGANDPAFTETTPYQPNSPYSASKAASDHLVRSYHHTYG 177 + L+ S+ VYG L P T+ + P S Y+A+K A++ + +Y H YG Sbjct: 119 Q-------HLLYASSSSVYG-LNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYG 170 Query: 178 MPVLTTNCSNNYGPFHFPEKLIPLMIVNALAGKALPVYGDGQQIRDWLYVEDHCSGIRRV 237 +P YGP+ P+ + L GK++ VY G+ RD+ Y++D I R+ Sbjct: 171 LPATGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRL 230 Query: 238 LEAGALGETYNIGGWNEKANIDIVQTLCTLLDELAPAAARQVINQKTGQPV--SAYAELI 295 + +T A A A +V N PV Y + + Sbjct: 231 QDVIPHADTQWTVETGTPA---------------ASIAPYRVYNIGNSSPVELMDYIQAL 275 Query: 296 ----------TYVTDRPGHDRRYAIDARKIERELGWKPAETFETGIRKTVEWYLTNQK 343 + +PG + D + + +G+ P T + G++ V WY K Sbjct: 276 EDALGIEAKKNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDFYK 333
>CLENTEROTOXN#Clostridium enterotoxin signature. Length = 319 Score = 31.2 bits (70), Expect = 0.011 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 2/82 (2%) Query: 137 PCYNLLNHKTSGLYPRIEKNTLHLQNKEQSIISIMLSNSYSQADKSLYASIINNEIQAKY 196 P NL + ++S YP +K LHL +L++ D ++Y++ NN ++ + Sbjct: 219 PAGNLYDWRSSNSYPWTQKLNLHLTITATGQKYRILASKI--VDFNIYSNNFNNLVKLEQ 276 Query: 197 SLYSERASLTGDNAYEAFKYAL 218 SL D + +A +Y L Sbjct: 277 SLGDGVKDHYVDISLDAGQYVL 298
>CABNDNGRPT#NodO calcium binding signature. Length = 479 Score = 51.9 bits (124), Expect = 3e-09 Identities = 25/131 (19%), Positives = 44/131 (33%), Gaps = 8/131 (6%) Query: 138 GTGDDLIIVGGDQNNFVDAGAGNDTIITGNGNNTVIAGAGNNNVITGSGNDTIVLSGTNH 197 G + G N + G + I G+GN+ ++ + +N + G+GND + G Sbjct: 318 NEGSFSDVGGLKGNVSIAHGVTIENAIGGSGNDILVGNSADNILQGGAGNDVLY--GGAG 375 Query: 198 ADVVNAGAGYDVVQLDGSVANYTFTAGNNFNVNLTGAQTASITGAEFLTFVNTTTSAVET 257 AD + GAG D + A ++ + I + F N + Sbjct: 376 ADTLYGGAGRDT--FVYGSGQDSTVAAYDWIAD----FQKGIDKIDLSAFRNEGQLSFVQ 429 Query: 258 VVLAQNDTEAT 268 E Sbjct: 430 DQFTGKGQEVM 440 Score = 49.6 bits (118), Expect = 2e-08 Identities = 34/120 (28%), Positives = 50/120 (41%), Gaps = 6/120 (5%) Query: 125 ADSSAITQFLLTTGTGDDLI-IVGGDQNNFVDAGAGNDTIITG-NGNNTVIAGAGNNNVI 182 DSS F + G D G N ++ G+ + + G GN ++ G N I Sbjct: 285 TDSSKALIFSVWDAGGTDTFDFSGYSNNQRINLNEGSFSDVGGLKGNVSIAHGVTIENAI 344 Query: 183 TGSGNDTIVLSGTNHADVVNAGAGYDVVQLDGSVANYTFTAGNNFNVNLTGAQTASITGA 242 GSGND +V G + +++ GAG DV L G T G + + G+ S A Sbjct: 345 GGSGNDILV--GNSADNILQGGAGNDV--LYGGAGADTLYGGAGRDTFVYGSGQDSTVAA 400 Score = 49.2 bits (117), Expect = 2e-08 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 1/80 (1%) Query: 135 LTTGTGDDLIIVGGDQNNFVDAGAGNDTIITGNGNNTVIAGAGNNNVITGSGNDTIVLSG 194 G+G+D+++ G +N + GAGND + G G +T+ GAG + + GSG D+ V + Sbjct: 343 AIGGSGNDILV-GNSADNILQGGAGNDVLYGGAGADTLYGGAGRDTFVYGSGQDSTVAAY 401 Query: 195 TNHADVVNAGAGYDVVQLDG 214 AD D+ Sbjct: 402 DWIADFQKGIDKIDLSAFRN 421 Score = 37.3 bits (86), Expect = 1e-04 Identities = 18/94 (19%), Positives = 31/94 (32%), Gaps = 7/94 (7%) Query: 140 GDDLIIVGGDQNNFVDAGAGNDTIITGNGNNTVIAGAGNNNVITGSGNDTIVLSGTNHAD 199 G ++ GD ++ D + + +I +V G DT SG ++ Sbjct: 259 GANMTTRTGDSVYGFNSNTDRDFYTATDSSKALI-----FSVWDAGGTDTFDFSGYSNNQ 313 Query: 200 VVNAGAGYDVVQLDGSVANYTFTAGNNFNVNLTG 233 +N G + G N + G N G Sbjct: 314 RINLNEG-SFSDVGGLKGNVSIAHGVTIE-NAIG 345
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 330 bits (848), Expect = e-111 Identities = 92/422 (21%), Positives = 181/422 (42%), Gaps = 8/422 (1%) Query: 24 RRIGVTIVLVTFGLFGTWAALAPLDNAVYGSGLVMVQSYRKTVQHLEGGIVKELLVRDGD 83 R + I+ + + L ++ +G + K ++ +E IVKE++V++G+ Sbjct: 58 RLVAYFIMGF-LVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGE 116 Query: 84 TVHKGDPLIVLDDSQLRSQYESTRNQLISTQAREARLRA-----ERDELPSIPPLTITGT 138 +V KGD L+ L + T++ L+ + + R + E ++LP + Sbjct: 117 SVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYF 176 Query: 139 DSVRAKEAIAGEQQVFSTRKNSRLTEISVQRERIGQLKQQISGLRDMIRTKVSLEKSYSS 198 +V +E + + ++ + + + + + + + I +L + S Sbjct: 177 QNVSEEEV-LRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKS 235 Query: 199 EITELKDLLSQGFVDKQRLLEQERKLDMLKSEVADHESTITKTQLQISETELQIIQLNKN 258 + + LL + + K +LEQE K +E+ ++S + + + +I + + + + Sbjct: 236 RLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQL 295 Query: 259 FSSDVAKELSDVQAKVFDLQETANALQDRLSRVVIRAPEDGMVLDMKVHTVGGVVSAGTP 318 F +++ +L + L ++R VIRAP V +KVHT GGVV+ Sbjct: 296 FKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAET 355 Query: 319 LLDIVPESSELVVEAHVAITDIDRISIGKLTDVHFSAFNSATTPVIEGEVTRISADRLKD 378 L+ IVPE L V A V DI I++G+ + AF + G+V I+ D ++D Sbjct: 356 LMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIED 415 Query: 379 DAGEPYYLVRVKLTEKGMK-RLGDRKLQPGMPAEVLINAGERTMLQYLLKPASNVFIKSM 437 + V + + E + + L GM I G R+++ YLL P +S+ Sbjct: 416 QRLGLVFNVIISIEENCLSTGNKNIPLSSGMAVTAEIKTGMRSVISYLLSPLEESVTESL 475 Query: 438 IE 439 E Sbjct: 476 RE 477
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 27.2 bits (60), Expect = 0.011 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 9/60 (15%) Query: 5 YGVLIASLAIASGCVEERVVHERPHVHHEY-------VEEVIAPQPPPERVVEVEPAPRP 57 +G ++A L S V + + P +E A QPPPE VVE EP P P Sbjct: 25 HGAVVAGLLYTS--VHQVIELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEP 82
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 34.8 bits (80), Expect = 0.001 Identities = 21/105 (20%), Positives = 34/105 (32%), Gaps = 3/105 (2%) Query: 554 GSFGSVQYSQMPNRVTGDEVKPEKARTWELGTRYDNGNLRAEIGAFLINFDNQYD--SNQ 611 G F + + + V EK + L + YDN L A + + + S+ Sbjct: 187 GFFVQYGGAYKRHHQVQENVNIEKYQIHRLVSGYDNDALYASVAVQQQDAKLVEENYSHN 246 Query: 612 TNDTVIARGETRHQGIETSVNYALEGLSPVLAGYDVYATYAFVDA 656 + V A R + V+YA G + Y V Sbjct: 247 SQTEVAATLAYRFGNVTPRVSYAH-GFKGSFDATNYNNDYDQVVV 290
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 44.6 bits (105), Expect = 2e-08 Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 4/77 (5%) Query: 67 CFLAMRDETVVGVIVC---WTS-AFIRDLVVHPDVRHSGIGHALLNHLFAHLHTRNEAAV 122 FL + +G I W A I D+ V D R G+G ALL+ + + Sbjct: 67 AFLYYLENNCIGRIKIRSNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGL 126 Query: 123 DLHVMENNLAARRLYEK 139 L + N++A Y K Sbjct: 127 MLETQDINISACHFYAK 143
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 57.5 bits (139), Expect = 2e-11 Identities = 24/111 (21%), Positives = 46/111 (41%), Gaps = 7/111 (6%) Query: 166 LSKARILVVDDSQVALQQSIITLRNLGLECHTARSAKEAIDVLLDLQGTARQINVVVSDI 225 ++ A ILV DD L G + +A + A ++VV+D+ Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWI-----AAGDGDLVVTDV 55 Query: 226 EMSEMDGYALTRTLRDTPDFSDLYILLHTSLDSAMNSEKSQIAGANAVLTK 276 M + + + L ++ DL +L+ ++ ++ M + K+ GA L K Sbjct: 56 VMPDENAFDLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPK 104
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 69.3 bits (169), Expect = 4e-16 Identities = 43/208 (20%), Positives = 76/208 (36%), Gaps = 19/208 (9%) Query: 10 RFAFDTSRTAVVIIDMQLDFLEPGGFGAALGNDVAPLQAIVPSVQRLLTLARDEGMTVIH 69 + D +R ++I DMQ F++ +P+ + ++++L G+ V++ Sbjct: 23 SWVPDPNRAVLLIHDMQNYFVDA------FTAGASPVTELSANIRKLKNQCVQLGIPVVY 76 Query: 70 TRESHRPDLADCPQAKRDHGSPGLRIGDPGPMGRILIRGEPGNQIIDALAPLADEWVIDK 129 T + + D D PGL G +II LAP D+ V+ K Sbjct: 77 TAQPGSQNPDDRALLT-DFWGPGLN------------SGPYEEKIITELAPEDDDLVLTK 123 Query: 130 PGKGMFFATDLQQRLSQAGITHLIFAGVTTEVCVQTSMREANDRGYRCLLIEDATESYFP 189 F T+L + + + G LI G+ + + EA + + DA + Sbjct: 124 WRYSAFKRTNLLEMMRKEGRDQLIITGIYAHIGCLVTACEAFMEDIKAFFVGDAVADFSL 183 Query: 190 AFKKATLEMITAQGGIVGRVASLTDLEQ 217 + LE + SL D Q Sbjct: 184 EKHQMALEYAAGRCAFTVMTDSLLDQLQ 211
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 51.9 bits (124), Expect = 3e-10 Identities = 47/207 (22%), Positives = 74/207 (35%), Gaps = 29/207 (14%) Query: 9 APYPWPWNGQLHAHNT---------ALIVIDMQTDFCGVGGYVDSMGYDLALTRAPIEPI 59 PY P + + L++ DMQ F VD+ + I Sbjct: 7 QPYQMPTASDMPQNKVSWVPDPNRAVLLIHDMQNYF------VDAFTAGASPVTELSANI 60 Query: 60 KALLATMRPLGFTIIHTREGHRPDLSDLPANKRWRSQRIGAGIGDPGPCGKILVRGEPGW 119 + L LG +++T + P ++ + + PG L G Sbjct: 61 RKLKNQCVQLGIPVVYTAQ---------PGSQNPDDRALLTDFWGPG-----LNSGPYEE 106 Query: 120 EIIDELAPLPGEIVLDKPGKGSFCATDLELILRTRGIDNLILTGITTDVCVHTTLREAND 179 +II ELAP ++VL K +F T+L ++R G D LI+TGI + T EA Sbjct: 107 KIITELAPEDDDLVLTKWRYSAFKRTNLLEMMRKEGRDQLIITGIYAHIGCLVTACEAFM 166 Query: 180 RGFECLLLEDCCGATDPDNHAAALSMV 206 + + D + H AL Sbjct: 167 EDIKAFFVGDAVADFSLEKHQMALEYA 193
>PF06917#Periplasmic pectate lyase Length = 555 Score = 28.7 bits (64), Expect = 0.034 Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 6/86 (6%) Query: 4 GLGGLNKSPNGVVIGLAQLALPDPHTREAL--WMQTQKVVGMVAKARRSNPGMDLIVFPE 61 L LNK+ + AQ + P+ AL + + + A + + +F Sbjct: 424 QLAELNKTQRRATLMAAQRPIASPYLLLALVELAEHCQCPTLFTLAWQ----IGDDLFKR 479 Query: 62 YSLHGLSMSTAPEIMCSLDGPEVMAL 87 + GL + +A +D P +AL Sbjct: 480 HYHRGLFVESAQHRYFRIDNPIALAL 505
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 34.1 bits (78), Expect = 0.001 Identities = 27/136 (19%), Positives = 51/136 (37%), Gaps = 5/136 (3%) Query: 80 AFGSLASGYISDRFGRRLTLRLLSVLFIAGALGTAIAPS-IPFMIAARFVLGIAVGGGSA 138 + G+ G +SD+ G + L ++ G++ + S +I ARF+ G A Sbjct: 63 SIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPA 122 Query: 139 TVPVFIAEIAGPSRRARLVSRNELMIVSGQLLAYVLSAVMAALLHTPGIWRYMLAVAMVP 198 V V +A R + L+ + V A+ + H W Y+L + M+ Sbjct: 123 LVMVVVARYIPKENRGKAFG---LIGSIVAMGEGVGPAIGGMIAHYIH-WSYLLLIPMIT 178 Query: 199 GVLLLVGTFFVPASPR 214 + + + R Sbjct: 179 IITVPFLMKLLKKEVR 194
>TYPE3OMGPROT#Type III secretion system outer membrane G protein family signature. Length = 607 Score = 619 bits (1599), Expect = 0.0 Identities = 175/571 (30%), Positives = 268/571 (46%), Gaps = 71/571 (12%) Query: 12 LIGLSPATWAVTPEAWKHTAYAYDARQTELATALADFAKEFGMALDMPP-IPGVLDDRIR 70 L+ LS +WA + W Y Y A+ L L DF + + + I + + Sbjct: 17 LLLLSSYSWAQELD-WLPIPYVYVAKGESLRDLLTDFGANYDATVVVSDKINDKVSGQFE 75 Query: 71 AQSPEEFLDRLGQEYHFQWFVYNDTLYVSPSSEHTSARIEVSSDAVDDLQTALTDVGLLD 130 +P++FL + Y+ W+ + LY+ +SE S I + +L+ AL G+ + Sbjct: 76 HDNPQDFLQHIASLYNLVWYYDGNVLYIFKNSEVASRLIRLQESEAAELKQALQRSGIWE 135 Query: 131 KRFGWGVLPNEGVVLVRGPAKYVELVRDYSKKVEAP-----EKGDKQDIIVFPLKYASAA 185 RFGW + +V V GP +Y+ELV + +E EK I +FPLKYASA+ Sbjct: 136 PRFGWRPDASNRLVYVSGPPRYLELVEQTAAALEQQTQIRSEKTGALAIEIFPLKYASAS 195 Query: 186 DRTIRYRDQQLVVAGVASILQDLLDTRSRGGSINGMDLLGRGGRGNGLAGGGSPDAPSLP 245 DRTI YRD ++ GVA+ILQ +L + + D +P Sbjct: 196 DRTIHYRDDEVAAPGVATILQRVLSDAT--------------------IQQVTVDNQRIP 235 Query: 246 MSSSGLDTNALEQGLDQVLHYGGGGKSAGKSRSGGRANIRVTADVRNNAVLIYDLPSRKA 305 ++ +R+ +A RV AD NA+++ D P R Sbjct: 236 QAA---------------------------TRASAQA--RVEADPSLNAIIVRDSPERMP 266 Query: 306 MYEKLIKELDVSRNLIEIDAVILDIDRNELAELSSRWNFNAGSVNGG----------ANM 355 MY++LI LD IE+ I+DI+ ++L EL W + N +N+ Sbjct: 267 MYQRLIHALDKPSARIEVALSIVDINADQLTELGVDWRVGIRTGNNHQVVIKTTGDQSNI 326 Query: 356 FDAGTSSTLFI-QNAGKFAAELHALEGNGSASVIGNPSILTLENQPAVIDFSRTEYLTAT 414 G +L + A ++ LE GSA V+ P++LT EN AVID S T Y+ T Sbjct: 327 ASNGALGSLVDARGLDYLLARVNLLENEGSAQVVSRPTLLTQENAQAVIDHSETYYVKVT 386 Query: 415 SERVANIEPITAGTSLQVTPRSLDHDGKPQVQLIVDIEDG-QIDISDINDTQPSVRKGNV 473 + VA ++ IT GT L++TPR L K ++ L + IEDG Q S + P++ + V Sbjct: 387 GKEVAELKGITYGTMLRMTPRVLTQGDKSEISLNLHIEDGNQKPNSSGIEGIPTISRTVV 446 Query: 474 STQAVIAEHGSLVIGGFHGLEANDKVHKVPLLGDIPYIGKLLFQSRSRELSQRERLFILT 533 T A + SL+IGG + E + + KVPLLGDIPYIG LF+ +S + RLFI+ Sbjct: 447 DTVARVGHGQSLIIGGIYRDELSVALSKVPLLGDIPYIGA-LFRRKSELTRRTVRLFIIE 505 Query: 534 PRLIGDQVNPARYVQNGNPHDVDDQMKRIKE 564 PR+I + + A ++ GN D+ + + E Sbjct: 506 PRIIDEGI--AHHLALGNGQDLRTGILTVDE 534
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 421 bits (1083), Expect = e-150 Identities = 107/346 (30%), Positives = 194/346 (56%), Gaps = 4/346 (1%) Query: 2 SEKTEKATPKQLRDAREKGQVGQSQDLGKLLVLMAVSEITLALADESVNRLEALLSLSFQ 61 EKTE+ TPK++RDAR+KGQV +S+++ +++A+S + + L+D L+ + + Sbjct: 3 GEKTEQPTPKKIRDARKKGQVAKSKEVVSTALIVALSAMLMGLSDYYFEHFSKLMLIPAE 62 Query: 62 GIDRSFAASVELIASEGLSVLLSFTLCSVGIAMLMRLISSWMQIGFLFAPKALKIDPNKI 121 F+ ++ + L + +A LM + S +Q GFL + +A+K D KI Sbjct: 63 QSYLPFSQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPDIKKI 122 Query: 122 NPFSHAKQMFSGQNLLNLLLSVLKAIAIGATLYVQVKPVLGTLVLLANSDLTTYWHALVE 181 NP AK++FS ++L+ L S+LK + + +++ +K L TL+ L + L + Sbjct: 123 NPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITPLLGQ 182 Query: 182 LFRHILRVILGLLLAIAMIDFAMQKYFHAKKLRMSHEDIKKEYKQSEGDPHVKGHRRQLA 241 + R ++ + + I++ D+A + Y + K+L+MS ++IK+EYK+ EG P +K RRQ Sbjct: 183 ILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKRRQFH 242 Query: 242 QEILNQEPSAAPKPVEDADMLLVNPTHYAVALYYRPGETPLPLIHCKGEDEEALALIARA 301 QEI ++ V+ + +++ NPTH A+ + Y+ GETPLPL+ K D + + A Sbjct: 243 QEIQSRNMRE---NVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKIA 299 Query: 302 KKAGIPVVQSIWLTRTLYR-SKVGKYIPRPTLQAVGHIYKVVRQLD 346 ++ G+P++Q I L R LY + V YIP ++A + + + + + Sbjct: 300 EEEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLERQN 345
>TYPE3IMRPROT#Type III secretion system inner membrane R protein family signature. Length = 261 Score = 171 bits (434), Expect = 1e-54 Identities = 38/248 (15%), Positives = 98/248 (39%), Gaps = 6/248 (2%) Query: 17 LAMARLMPCMLLVPAFCFKYLKGPLRYAVVAVMAMIPAPAISKALESLDDNWFAIGGLLI 76 + R++ + P + + ++ + ++ AP++ + F L + Sbjct: 18 WPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFS--FFALWLAV 75 Query: 77 KEAVLGTLLGLLLYAPFWMFASVGALLDSQRGALSGGQLNPALGPDATPLGELFQETLIM 136 ++ ++G LG + F + G ++ Q G ++PA + L + ++ Sbjct: 76 QQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALL 135 Query: 137 LVILTGGLSLMTQIIWDSYSVWPPTAWMPGMNAGGLDVFLEQLNQTMQHMLLYAAPFIAL 196 L + G + ++ D++ P +N+ + + + L+ A P I L Sbjct: 136 LFLTFNGHLWLISLLVDTFHTLPIGG--EPLNSNAFLALTKAGSLIFLNGLMLALPLITL 193 Query: 197 LLLIEAAFAIIGLYAQQLNVSILAMPAKSMAGLAFLLIYLPTLLELGTGQLLKLVDLKSL 256 LL + A ++ A QL++ ++ P G++ + +P + ++ +L L Sbjct: 194 LLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNL--L 251 Query: 257 LTLLVQVP 264 ++ ++P Sbjct: 252 ADIISELP 259
>TYPE3IMQPROT#Type III secretion system inner membrane Q protein family signature. Length = 86 Score = 74.8 bits (184), Expect = 1e-21 Identities = 29/84 (34%), Positives = 46/84 (54%) Query: 2 EALALFKQGMFLVVILTAPPLAVAVLVGVVTSLLQALMQIQDQTLPFGIKLGAVGLTLAM 61 + + + ++LV+IL+ P VA ++G++ L Q + Q+Q+QTLPFGIKL V L L + Sbjct: 3 DLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFL 62 Query: 62 TGRWIGVELIEFINMAFDLIARSG 85 W G L+ + L G Sbjct: 63 LSGWYGEVLLSYGRQVIFLALAKG 86
>TYPE3IMPPROT#Type III secretion system inner membrane P protein family signature. Length = 224 Score = 239 bits (611), Expect = 1e-82 Identities = 76/218 (34%), Positives = 128/218 (58%), Gaps = 7/218 (3%) Query: 7 NPIMLALFLGSLSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMF 66 N I L L +L+PF++ T F+K ++ ++ RNA+G+QQ+P NM L G+AL +MF Sbjct: 3 NDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSMF 62 Query: 67 VMAPVAHDIQQRVHEHPLELSNADKLQSSLKVVIEPLQRFMTRNTDPDVVAHLLENTQRM 126 VM P+ HD + + ++ L + ++ + ++ + +D ++V + Sbjct: 63 VMWPIMHDAYVYFEDEDVTFNDISSLSKHVDEGLDGYRDYLIKYSDRELVQFFENAQLKR 122 Query: 127 WPKEMA-------DQASKDDLLLAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLA 179 E D+ K + +PA+ LSE+++ F+IGF +Y+PF+V+DL+VS++LLA Sbjct: 123 QYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYLYLPFVVVDLVVSSVLLA 182 Query: 180 LGMQMVSPMTLSLPLKLLLFVLVSGWSRLLDSLFYSYM 217 LGM M+SP+T+S P+KL+LFV + GW+ L L YM Sbjct: 183 LGMMMMSPVTISTPIKLVLFVALDGWTLLSKGLILQYM 220
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 46.4 bits (110), Expect = 2e-09 Identities = 23/82 (28%), Positives = 46/82 (56%) Query: 51 SGDHHESPMLDSLELDLTLRCGELRLTLAELRRLDAGTILEVSGIAPGHATLCHGEQVVA 110 SG + ++ + + LT+ G R+T+ EL RL G+++ + G+A + ++A Sbjct: 48 SGAMQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIA 107 Query: 111 EGELVDVEGRLGLQITRLVARS 132 +GE+V V + G++IT ++ S Sbjct: 108 QGEVVVVADKYGVRITDIITPS 129
>FLGMOTORFLIM#Flagellar motor switch protein FliM signature. Length = 344 Score = 35.6 bits (82), Expect = 1e-04 Identities = 18/93 (19%), Positives = 37/93 (39%), Gaps = 15/93 (16%) Query: 114 APTEPAIGCRVHVRLGSERLDAHL---HAAPATLLRLLGSADW-QVLKRDVDQSW----- 164 P+E + + ++G E + + ++ L S W ++R + Sbjct: 192 PPSEMVVLVTLETKVGEEEGMMNFCIPYITIEPIISKLSSQFWFSSVRRSSTTQYMGVLR 251 Query: 165 ----SVATPLI--VGELSLTLEQIAALRPGDVV 191 +V ++ VG L L++ I LR GD++ Sbjct: 252 DKLSTVDMDVVAEVGSLRLSVRDILGLRVGDII 284
>BACINVASINB#Salmonella/Shigella invasin protein B signature. Length = 593 Score = 29.7 bits (66), Expect = 0.004 Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 3/98 (3%) Query: 31 SAERAHRQAQLELKSM---LDHLAETRASLNQERDNHKRRRESLSHAHLQKTLSLTDVDG 87 +A + QAQ +L+S+ A+ A++ Q +E+L A + TD Sbjct: 159 AATKKLTQAQNKLQSLDPADPGYAQAEAAVEQAGKEATEAKEALDKATDATVKAGTDAKA 218 Query: 88 WHEKERTMLDRLACIRQDVEQQQMRVAEQQALLEQKRL 125 EK +L + Q Q+ EQ L RL Sbjct: 219 KAEKADNILTKFQGTANAASQNQVSQGEQDNLSNVARL 256
>TYPE3OMGPROT#Type III secretion system outer membrane G protein family signature. Length = 607 Score = 32.2 bits (73), Expect = 0.009 Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 8/66 (12%) Query: 628 AFPVRAPEQAVLLVAQDLRSPLRTLLRE--EFYHVPVLSFAEISNAAKVKVMGRFDLEDD 685 A + + VA+ LR LL + Y V+ +S+ KV G+F+ ++ Sbjct: 26 AQELDWLPIPYVYVAK--GESLRDLLTDFGANYDATVV----VSDKINDKVSGQFEHDNP 79 Query: 686 LEALDN 691 + L + Sbjct: 80 QDFLQH 85
>PF07201#Hypersensitivity response secretion protein HrpJ Length = 293 Score = 177 bits (451), Expect = 4e-55 Identities = 33/225 (14%), Positives = 77/225 (34%), Gaps = 13/225 (5%) Query: 78 HSRILRERELI---ASRNALQSRAVKLGELYQLLMSASDTGLDNAARLLRKKLLQDNDAD 134 L +R+L A + ++ + + L + + + L + + Sbjct: 64 KELSLDKRKLSDSQARVSDVEEQVNQYLSKVPELEQKQNVS-ELLSLLSNSPN--ISLSQ 120 Query: 135 LEQVLEFADGDAAKAHVVLQAARKQAEDDGAEAEYVALT-QTLKHLRRQFGPRTRAGIN- 192 L+ LE + ++ +L R + A L Q L + + G G Sbjct: 121 LKAYLEGKSEEPSEQFKMLCGLRDALKGRPELAHLSHLVEQALVSMAEEQGETIVLGARI 180 Query: 193 --TARAFGRQNIDNKRRTALRNLYGVAVSGQPNVTGLIEALIGEQQEPGEFDLNLRDMRI 250 A + ++ + LR+ Y AV G + + L ++ G+ D + ++ Sbjct: 181 TPEAYRESQSGVNPLQ--PLRDTYRDAVMGYQGIYAIWSDLQ-KRFPNGDIDSVILFLQK 237 Query: 251 AIADDLSAITPSASHEQLRTLMHGLTTARHVTTLLRGCEHLLGRM 295 A++ DL + + E+L ++ L + ++ + Sbjct: 238 ALSADLQSQQSGSGREKLGIVISDLQKLKEFGSVSDQVKGFWQFF 282
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 117 bits (295), Expect = 5e-31 Identities = 83/372 (22%), Positives = 143/372 (38%), Gaps = 50/372 (13%) Query: 22 VGIDLGTTNSLVAAVRSGLSEPLADAEGQVILPSAVRYHADRVEVGQSAKIAASQDPFNT 81 + IDLGT N+L+ G+ + PS V + G +AA Sbjct: 13 LSIDLGTANTLIYVKGQGIV---------LNEPSVVA--IRQDRAGSPKSVAAVGHD--- 58 Query: 82 VLSVKRLMGRGLTDVKQLGEQLPYRFVGGESHMPFIDTVQGPKSPVEVSADILK-VLRQR 140 K+++GR ++ + P D V V+ +L+ ++Q Sbjct: 59 ---AKQMLGRTPGNIAAI--------------RPMKDGVIAD---FFVTEKMLQHFIKQV 98 Query: 141 AEASLGGELVGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAVAYGLDQKAE 200 S ++ VP +R+A +++A+ AG + L+ EP AAA+ GL Sbjct: 99 HSNSFMRPSPRVLVCVPVGATQVERRAIRESAQGAGAREVFLIEEPMAAAIGAGLPVSEA 158 Query: 201 GVVAIYDLGGGTFDISILRLTGGVFEVLATGGDTALGGDDFDHAIASWIVTDAGLSADID 260 + D+GGGT +++++ L G V +GGD FD AI +++ + G + Sbjct: 159 TGSMVVDIGGGTTEVAVISLNGVV-----YSSSVRIGGDRFDEAIINYVRRNYGSLIG-E 212 Query: 261 PSAQRSLLQAACSAKEALTDAESV---EVVYGEWRGTL--TREALNALIEPMVARSLKAC 315 +A+R + + V + G RG + E L AL EP + + A Sbjct: 213 ATAERIKHEIGSAYPGDEVREIEVRGRNLAEGVPRGFTLNSNEILEALQEP-LTGIVSAV 271 Query: 316 RRAVRDTGIELEE--VEA-VVMVGGSTRVPRVREAVAELFGRQPLTEIDPDQVVAIGAAI 372 A+ EL E +V+ GG + + + E G + DP VA G Sbjct: 272 MVALEQCPPELASDISERGMVLTGGGALLRNLDRLLMEETGIPVVVAEDPLTCVARGGGK 331 Query: 373 QADTLAGNKRDG 384 + + + D Sbjct: 332 ALEMIDMHGGDL 343
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 36.6 bits (84), Expect = 2e-04 Identities = 17/84 (20%), Positives = 27/84 (32%), Gaps = 1/84 (1%) Query: 169 PEEPAVAETPASGQTSLPLNTGAPASEAPAAAPAAPASSVTGHATAQ-PQTPAAATPPAS 227 +P V QT+ +T PA E + S T + + P TP + Sbjct: 1148 ENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATT 1207 Query: 228 APQAPVAAPNVPSMPTAPAEQPAP 251 P + N P + + P Sbjct: 1208 QPTVNSESSNKPKNRHRRSVRSVP 1231
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 26.7 bits (59), Expect = 0.046 Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 13/64 (20%) Query: 58 DDDPS----------FMGRR-LSFSHDQLAWKASTDSTEDVCKGPVFHKLPAMSGAELEP 106 DDD + G S+ W+ D+ V +P + +L P Sbjct: 10 DDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDV--VMPDENAFDLLP 67 Query: 107 QLHK 110 ++ K Sbjct: 68 RIKK 71
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 160 bits (406), Expect = 2e-53 Identities = 52/147 (35%), Positives = 81/147 (55%) Query: 8 SEEDRKSIVDGLSHLLSDTYVLYLKTHNFHWNVSGPMFRTLHLMFEEQYNELALAVDSIA 67 ++ ++ + + L+ LS+ ++LY K H FHW V GP F TLH FEE Y+ A VD+IA Sbjct: 6 AKTNQTLVENSLNTQLSNWFLLYSKLHRFHWYVKGPHFFTLHEKFEELYDHAAETVDTIA 65 Query: 68 ERIRALGFPAPGTYSTYARLSSIKEEEGVPSAEDMIKSLVQGQEAVVRTARSIFPLLDKV 127 ER+ A+G T Y +SI + SA +M+++LV + + ++ + L ++ Sbjct: 66 ERLLAIGGQPVATVKEYTEHASITDGGNETSASEMVQALVNDYKQISSESKFVIGLAEEN 125 Query: 128 SDEPTADLLTQRMQVHEKTAWMLRSML 154 D TADL ++ EK WML S L Sbjct: 126 QDNATADLFVGLIEEVEKQVWMLSSYL 152
>PF07520#Virulence protein SrfB Length = 1041 Score = 28.0 bits (62), Expect = 0.049 Identities = 12/37 (32%), Positives = 17/37 (45%) Query: 26 TKWIRELTVAARQGGGDPGSNPRLRLALDKALGANMT 62 + W R TV Q + G R+++ALD AL Sbjct: 125 SSWARLRTVELPQPDPETGHTHRVQIALDTALSDQDQ 161
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 60.5 bits (146), Expect = 5e-12 Identities = 35/200 (17%), Positives = 73/200 (36%), Gaps = 6/200 (3%) Query: 78 ARQTEVEQLEQKKIEQQKQEAVKAAEQKKEESAQKAEEQKAADEAKK----AEQKAEEAK 133 A T E E E KQE+ + +++ + A+ ++ A EAK Q E A+ Sbjct: 1029 APATPSETTETVA-ENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQ 1087 Query: 134 KADDAKKADEAKKVADAKKLEEKQLADIAKKKAEDEAKKKAEEDAKKAAAEEAKKQAADE 193 + K+ + A E+++ A + +K ++ K ++ K+ +E + QA Sbjct: 1088 SGSETKETQTTETKETATV-EKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPA 1146 Query: 194 AKKKAAEDAKKKAAEDAKKKAAADSAKKAQEAARKSAEDKKAQALADLLSDKPERQQALA 253 + + K+ ++ AK+ + + + + + PE Sbjct: 1147 RENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPAT 1206 Query: 254 DERGDETAGSFDDLIRVRAS 273 + + S R R S Sbjct: 1207 TQPTVNSESSNKPKNRHRRS 1226 Score = 58.2 bits (140), Expect = 3e-11 Identities = 34/205 (16%), Positives = 68/205 (33%), Gaps = 14/205 (6%) Query: 61 ATTQTNQKIAGEAKKTAARQTEVEQLEQKKIEQQKQEAVKAAEQKKEESAQKAEEQKAAD 120 Q + + AR E + A K+E + EQ A + Sbjct: 1001 NNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATE 1060 Query: 121 EAKKAEQKAEEAKKADDA-----KKADEAKKVADAKKLEEKQLADIAKKKAEDEAKKKAE 175 + + A+EAK A + A + + + E K+ A + E E K K E Sbjct: 1061 TTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATV-----EKEEKAKVE 1115 Query: 176 EDAKKAAAEEAKKQAADEAKKKAAEDAKKKAAEDAKKKAAADSAKKAQEAARKSAEDKKA 235 + +E K + + K+ + + AE A++ + K+ Q +A+ ++ Sbjct: 1116 TEKT----QEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQP 1171 Query: 236 QALADLLSDKPERQQALADERGDET 260 ++P + + Sbjct: 1172 AKETSSNVEQPVTESTTVNTGNSVV 1196
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 113 bits (283), Expect = 8e-33 Identities = 34/112 (30%), Positives = 51/112 (45%), Gaps = 12/112 (10%) Query: 67 YFEYDSSDLKPEAMRSLDVHA---KDLKANGARVVLEGNTDERGTREYNMALGERRAKAV 123 F ++ + LKPE +LD +L VV+ G TD G+ YN L ERRA++V Sbjct: 222 LFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSV 281 Query: 124 QRYLVLQGVSPAQLELVSYGEERPVATGNDEQS---------WAQNRRVELR 166 YL+ +G+ ++ GE PV + A +RRVE+ Sbjct: 282 VDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 333
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 29.0 bits (65), Expect = 0.018 Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 10/78 (12%) Query: 41 MQLQQMQDEIARLRGVVEVQQNDIQR-----MKQEALERYQELDQRIASGSAAPATNNSQ 95 ++D ++RL GV +VQ Q + + L +Y+ + + N Q Sbjct: 157 YVASNVKDTLSRLNGVGDVQLFGAQYAMRIWLDADLLNKYKLTPVDVIN---QLKVQNDQ 213 Query: 96 PAGGAIDAGGTPSAPAAQ 113 A G + GGTP+ P Q Sbjct: 214 IAAGQL--GGTPALPGQQ 229
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 29.3 bits (65), Expect = 0.047 Identities = 33/218 (15%), Positives = 71/218 (32%), Gaps = 21/218 (9%) Query: 28 SAPAPSTETPAPKLTAE----QAKALGVEGDTPSDTLRTVVAEGRELKQQITDVIAQNTA 83 PAP+T + + AE ++K + ++T +E K + N Sbjct: 1026 PPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEV 1085 Query: 84 VKQDNETLKQRLANIDQTVDQRLKNAQEQFKLDSQQQQQSVLEGLRKQMDELTRMGQNSN 143 + +ET + + +T +E+ K+++++ Q E + + Q+ Sbjct: 1086 AQSGSETKETQTTETKETATVE---KEEKAKVETEKTQ----EVPKVTSQVSPKQEQSET 1138 Query: 144 SNSDLPIGLGVQPGDGQQFKSETSGSDIVWIDPQDATALDSNGKPITAGNSVPASAYSFP 203 VQP +++ + + + TA T+ N S Sbjct: 1139 ----------VQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTT 1188 Query: 204 TAFGESVDRGQKALTTGAQSVRDDMGGQQQERKKVRRA 241 G SV + T + + + + RR+ Sbjct: 1189 VNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRS 1226
>BACINVASINC#Salmonella/Shigella invasin protein C signature. Length = 409 Score = 27.5 bits (60), Expect = 0.030 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 2/48 (4%) Query: 21 AKFYDNQCMNLNAVSITPTAAVSMTAIRMVSFSSSLDSRVSMSAFVAS 68 KF+D M+ +AV++ A M + S L ++S+ +F A+ Sbjct: 114 GKFFDISGMSSSAVALLAAANTLMLTLNQA--DSKLSGKLSLVSFDAA 159
>TYPE3OMGPROT#Type III secretion system outer membrane G protein family signature. Length = 607 Score = 28.7 bits (64), Expect = 0.037 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 5/66 (7%) Query: 120 AGAFGTTLSKDGSLLYV--NNEAAS---TLSVIDLDHQRPVAVVPGFSQPRQGIRVSPDG 174 A + DG++LY+ N+E AS L + + G +PR G R Sbjct: 87 ASLYNLVWYYDGNVLYIFKNSEVASRLIRLQESEAAELKQALQRSGIWEPRFGWRPDASN 146 Query: 175 KTVYVT 180 + VYV+ Sbjct: 147 RLVYVS 152
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 84.5 bits (209), Expect = 4e-21 Identities = 34/117 (29%), Positives = 58/117 (49%) Query: 2 KLLVAEDEPKTGIYLQQGLREAGFNVDRVVTGTDAVDQALNEAYDLLILDVMMPGLDGWE 61 +LVA+D+ L Q L AG++V DL++ DV+MP + ++ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 VIRRLRTVGQSVPVLFLTARDGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRR 118 ++ R++ +PVL ++A++ +K E GA DYL KPF +EL+ + L Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 28.3 bits (63), Expect = 0.036 Identities = 11/59 (18%), Positives = 27/59 (45%) Query: 10 RKNGFVVIELLFGLIIFAIASAIGVSLMADRMDAQNYQIAAQQQQQIAEAASKYLKDNF 68 ++ GF ++E++ ++I + +++ V + + + Q A + A Y DN Sbjct: 6 KQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKLDNH 64
>PilS_PF08805#PilS N terminal Length = 185 Score = 130 bits (329), Expect = 4e-41 Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 15/162 (9%) Query: 16 ISIELLFVLIVILIGMGYALYNGWGAMGSSDVNNEQGNVGQLIANTRKLKGSTGYGASGT 75 + + L+ +IV+L Y LY+ + +NEQ NV +IAN + LK Y + + Sbjct: 31 MEVLLVVGVIVVLAASAYKLYSM--VQSNIQSSNEQNNVLTVIANMKSLKFQGRY--TDS 86 Query: 76 DLIAQLSSIRGLPN---MSFSSGKLYNAWSGQVTVVA--NGMTFTVTEAGLPQDACVTLA 130 + I L + LP+ + N W G VT+ + +F V EA +PQ C+ + Sbjct: 87 NYIKTLYAQGLLPSDMIADTTGASAKNPWGGSVTITTSSDKYSFNVVEANVPQKNCMAMV 146 Query: 131 TKIGRGQKVTTSINGGTAVNGEVSSAAATSGCSTDSNTLAWT 172 + + IN N S+ +A + C++DSNTL ++ Sbjct: 147 NALRS-SSAISKIN-----NTSTSTVSAATVCASDSNTLTFS 182
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 50.2 bits (120), Expect = 6e-09 Identities = 59/267 (22%), Positives = 109/267 (40%), Gaps = 20/267 (7%) Query: 33 MTALLENGVPLDLAIDRIGSIYSDGGRRARHPIALASYGIGKAVDGGKTLAQACLNWVPY 92 + L+ +PL+ A+D + + +A + V G +LA A + Sbjct: 77 LATLVAASMPLEEALDAVA----KQSEKPHLSQLMA--AVRSKVMEGHSLADAMKCFPGS 130 Query: 93 QEH---AVISAGEKSGNLIQAFSDCVRIIEARQKVMKLVVSTASYP----VFVWSLMAYL 145 E A+++AGE SG+L + E RQ++ + YP V ++++ L Sbjct: 131 FERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVLTVVAIAVVSIL 190 Query: 146 LNVIATRVVPAMSRSSNPEAWSGAPMVLHMIATFVTNWGLLTLCLVVVLVVTSVVTL--P 203 L+V+ +VV S VL ++ V +G L ++ + V L Sbjct: 191 LSVVVPKVVEQFIHMKQALPLSTR--VLMGMSDAVRTFGPWMLLALLAGFMAFRVMLRQE 248 Query: 204 YFRGPWRTRLEILPPW-SIYKALHGSTFLLNIAVMLRANIDPLGALDTL-KRGANPWLRE 261 R + RL LP I + L+ + + ++++ + + L A+ +N + R Sbjct: 249 KRRVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAMRISGDVMSNDYARH 308 Query: 262 RLEAAHYGVRMGKNFGEALDLSGHEFP 288 RL A VR G + +AL+ + FP Sbjct: 309 RLSLATDAVREGVSLHKALEQTA-LFP 334
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 31.2 bits (70), Expect = 0.009 Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 10/72 (13%) Query: 217 QWNEHKLQLARQAQQAAEAARQAEL--------DALNQRTNSPVVIEALVHPWVKQPSVP 268 +W+ +L+ QA+QAA A AE DAL QR +V EAL H + PS Sbjct: 56 KWSTAQLK-KTQAEQAARAKAAAEAQAKAKANRDALTQRLKD-IVNEALRHNASRTPSAT 113 Query: 269 VFLRGCNGAIDQ 280 N A+ Sbjct: 114 ELAHANNAAMQA 125
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 90.4 bits (224), Expect = 5e-21 Identities = 74/326 (22%), Positives = 138/326 (42%), Gaps = 29/326 (8%) Query: 271 SNQSTTVTLNTSILTDIQSNVRAMLSTSPPGRMYL---SPSTGTLTVTDRPDVLSNVETY 327 + S V + T I + +QS +A + + + T L VT PDV++++E Sbjct: 277 AKASDLVEVLTGISSTMQSEKQAAKPVAALDKNIIIKAHGQTNALIVTAAPDVMNDLERV 336 Query: 328 LAKTNHAITQQVLFNVKVFEATLTDTDQLALNWAAVYNSLS--TKWGLSLSNTVPGISSS 385 +A+ + QVL + E D L + WA ++ T GL +S + G + Sbjct: 337 IAQLDIRR-PQVLVEAIIAEVQDADGLNLGIQWANKNAGMTQFTNSGLPISTAIAGANQY 395 Query: 386 AISGSV-----GIVDTANSAWAGS-----NAIIQAIAEQARISNVRSPSVTTLNLQPAPL 435 G+V + + N AG ++ A++ + + +PS+ TL+ A Sbjct: 396 NKDGTVSSSLASALSSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMEATF 455 Query: 436 QIGNVQGYIPSVQTNTTASVGSSTAITPGTITSGFNMTLQPRLMDDDEMLLMVSINMSSK 495 NV +P + + T S + T T G + ++P++ + D +LL + +SS Sbjct: 456 ---NVGQEVPVLTGSQTTSGDNIFN-TVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSV 511 Query: 496 PTFEPFTSNGSSVQIPNYDAKSLSPKVKLRSGQTLILSGF--EELSDNTDKI---GTGSP 550 TS+ + ++++ V + SG+T+++ G + +SD DK+ G P Sbjct: 512 ADAASSTSSDLGATF---NTRTVNNAVLVGSGETVVVGGLLDKSVSDTADKVPLLGD-IP 567 Query: 551 GFFGLGGGRKRTSSKSVLVVLITPIV 576 L + SK L++ I P V Sbjct: 568 VIGALFRSTSKKVSKRNLMLFIRPTV 593
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 28.8 bits (64), Expect = 0.035 Identities = 22/143 (15%), Positives = 33/143 (23%), Gaps = 7/143 (4%) Query: 175 ALAQPAQPASTGSTSVASTSPAVTVVTAPATGTPFSKDTSPAGQPQTTVVTQAKAQPAAS 234 L PAQP S + A P V P P +P+ +A Sbjct: 42 ELPAPAQPISVTMVAPADLEPPQAVQPPPEP------VVEPEPEPEPIPEPPKEAPVVIE 95 Query: 235 ISTPAKEGTPTQQKPTPVSAAPAKATSQTTVTKSIASTSQAPMKPEPAAKPVATVAPQQT 294 P + P K K + + P A V + Sbjct: 96 KPKPKPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATSKPVTSVAS 155 Query: 295 WNAPVGSTLRQSVEDWAKRAGWQ 317 + Q A+ + Sbjct: 156 GPRALSRNQPQYPAR-AQALRIE 177
>SECA#SecA protein signature. Length = 901 Score = 49.9 bits (119), Expect = 2e-08 Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 9/73 (12%) Query: 419 TIFAVDATVPLSSEEREMAQ-------HTMKTLRILD--HVVERVIQTSNSGADVGRNEP 469 T+ V +P EE E + M+ L D + VGRN+P Sbjct: 825 TLSKVQVRMPEEVEELEQQRRMEAERLAQMQQLSHQDDDSAAAAALAAQTGERKVGRNDP 884 Query: 470 CPCGSKKKYKKCC 482 CPCGS KKYK+C Sbjct: 885 CPCGSGKKYKQCH 897
>ARGREPRESSOR#Bacterial arginine repressor signature. Length = 149 Score = 29.1 bits (65), Expect = 0.024 Identities = 11/24 (45%), Positives = 16/24 (66%) Query: 170 SQRELVRRLSADGYPVSQSHISKM 193 +Q ELV L DGY V+Q+ +S+ Sbjct: 21 TQDELVDILKKDGYNVTQATVSRD 44
>ICENUCLEATIN#Ice nucleation protein signature. Length = 1258 Score = 1051 bits (2719), Expect = 0.0 Identities = 973/1340 (72%), Positives = 1089/1340 (81%), Gaps = 82/1340 (6%) Query: 1 MNLDKALVLRTCANNMADHCGLIWPASGTVESKYWQSTRRHENGLVGLLWGAGTSAFLSV 60 M DK L+LRTCANNMADH G+IWP SG VE KYW+ + ENGL GL+WG G+ + LS+ Sbjct: 1 MKEDKVLILRTCANNMADHGGIIWPLSGIVECKYWKPVKGFENGLTGLIWGKGSDSPLSL 60 Query: 61 HADARWIVCEVAVADIISLDEPGMVKFPRAEVVHVGDRISASHFISARQADPASTPPPTS 120 HADARW+V EV + I+++ G +KFPRAEV+HVG + SA FI +AD + + Sbjct: 61 HADARWVVAEVDADECIAIETHGWIKFPRAEVLHVGTKTSAMQFILHHRADYVACTEMQA 120 Query: 121 MTTPPPTPAAAHVTLPVAASVTLPVAEQASHEVFDVALVIAAAPSVNTLPVTTPQNLQTA 180 P + V + + ++ + Q ++ A Sbjct: 121 GPGSPDVTSEVKVGNR------------------SLPVTDDIDATIESGSTQPTQTIEIA 162 Query: 181 TYGSTLSGDNHSRLIAGYGSNETAGNHSDLIAGYGSTGTAGSDSSLVAGYGSTQTAGGDS 240 TYGSTLSG + S+LIAGYGS ETAG+ S LIAGYGSTGTAG+DS+LVAGYGSTQTAG +S Sbjct: 163 TYGSTLSGTHQSQLIAGYGSTETAGDSSTLIAGYGSTGTAGADSTLVAGYGSTQTAGEES 222 Query: 241 ALTAGYGSTQTAREGSNLTAGYGSTGTAGSDSSLIAGYGSTQTSGEDSSLTAGYGSTQTA 300 + AGYGSTQT +GS+LTAGYGSTGTAG DSSLIAGYGSTQT+GEDSSLTAGYGSTQTA Sbjct: 223 SQMAGYGSTQTGMKGSDLTAGYGSTGTAGDDSSLIAGYGSTQTAGEDSSLTAGYGSTQTA 282 Query: 301 QEGSNLTAGYGSTGTAGSDSSLIAGYGSTQTSGGDSSLTAGYGSTQTAQEGSNLTAGYGS 360 Q+GS+LTAGYGSTGTAG+DSSLIAGYGSTQT+G +S+ TAGYGSTQTAQ+GS+LTAGYGS Sbjct: 283 QKGSDLTAGYGSTGTAGADSSLIAGYGSTQTAGEESTQTAGYGSTQTAQKGSDLTAGYGS 342 Query: 361 TGTAGSDSSLIAGYGSTQTSGEDSSLTAGYGSTQTAQEGSNLTAGYGSTGTAGSDSSLIA 420 TGTAG DSSLIAGYGSTQT+GEDSSLTAGYGSTQTAQ+GS+LTAGYGSTGTAG+DSSLIA Sbjct: 343 TGTAGDDSSLIAGYGSTQTAGEDSSLTAGYGSTQTAQKGSDLTAGYGSTGTAGADSSLIA 402 Query: 421 GYGSTQTSGGDSSLTAGYGSTQTAQEGSNLTSGYGSTGTAGADSSLIAGYGSTQTSGSDS 480 GYGSTQT+G +S+ TAGYGSTQTAQ+GS+LT+GYGSTGTAG DSSLIAGYGSTQT+G DS Sbjct: 403 GYGSTQTAGEESTQTAGYGSTQTAQKGSDLTAGYGSTGTAGDDSSLIAGYGSTQTAGEDS 462 Query: 481 ALTAGYGSTQTAQQGSNLTAGYGSTGTAGSDSSLIAGYGSTQTSGSDSSLTAGYGSTQTA 540 +LTAGYGSTQTAQ+GS+LTAGYGST TAG +SSLIAGYGSTQT+G S+LTAGYGSTQTA Sbjct: 463 SLTAGYGSTQTAQKGSDLTAGYGSTSTAGYESSLIAGYGSTQTAGYGSTLTAGYGSTQTA 522 Query: 541 QEGSNLTAGYGSTGTAGVDSSLIAGYGSTQTSGSDSALTAGYGSTQTAQEGSNLTAGYGS 600 Q S+L GYGST TAG +SSLIAGYGSTQT+ +S LTAGYGSTQTA+EGS+LTAGYGS Sbjct: 523 QNESDLITGYGSTSTAGANSSLIAGYGSTQTASYNSVLTAGYGSTQTAREGSDLTAGYGS 582 Query: 601 TGTAGADSSLIAGYGSTQTSGSDSALTAGYGSTQTAQEGSNLTAGYGSTGTAGADSSLIA 660 TGTAG+DSS+IAGYGSTQT+ S+LTAGYGSTQTA+E S LT GYGST TAGADSSLIA Sbjct: 583 TGTAGSDSSIIAGYGSTQTASYHSSLTAGYGSTQTAREQSVLTTGYGSTSTAGADSSLIA 642 Query: 661 GYGSTQTSGSESSLTAGYGSTQTAREGSTLTAGYGSTGTAGADSSLIAGYGSTQTSGSES 720 GYGSTQT+G S LTAGYGSTQTA+EGS LTAGYGST TAGADSSLIAGYGSTQT+G S Sbjct: 643 GYGSTQTAGYNSILTAGYGSTQTAQEGSDLTAGYGSTSTAGADSSLIAGYGSTQTAGYNS 702 Query: 721 SLTAGYGSTQTAQQGSVLTSGYGSTQTAGAASNLTTGYGSTGTAGHESFIIAGYGSTQTA 780 LTAGYGSTQTAQ+GS LTSGYGST TAGA S+L IAGYGSTQTA Sbjct: 703 ILTAGYGSTQTAQEGSDLTSGYGSTSTAGADSSL----------------IAGYGSTQTA 746 Query: 781 GHKSILTAGYGSTQTARDGSDLIAGYGSTGTSGSSSSLIAGYGSTQTASYKSMLTAGYGS 840 + S LTAGYGSTQTAR+ S L GYGST T+G+ S Sbjct: 747 SYHSSLTAGYGSTQTAREQSVLTTGYGSTSTAGADS------------------------ 782 Query: 841 TQTAREHSDLVAGYGSTSTAGSNSSLIAGYGSTQTAGFKSILTAGYGSTQTAQERSDLVA 900 SLIAGYGSTQTAG+ SILTAGYGSTQTAQERSDL Sbjct: 783 ------------------------SLIAGYGSTQTAGYHSILTAGYGSTQTAQERSDLTT 818 Query: 901 GYGSTSTAGYSSSLIAGYGSTQTAGYGSTLTTGYGSTQTAQENSSLTTGYGSTSTAGYSS 960 GYGSTSTAG SSLIAGYGSTQTAGY S LT GYGSTQTAQENS LTTGYGSTSTAGY S Sbjct: 819 GYGSTSTAGADSSLIAGYGSTQTAGYNSILTAGYGSTQTAQENSDLTTGYGSTSTAGYDS 878 Query: 961 SLIAGYGSTQTAGYESTLTAGYGSTQTAQERSDLVTGYGSTSTAGYASSLIAGYGSTQTA 1020 SLIAGYGSTQTAGY S LTAGYGSTQTAQE SDL TGYGSTSTAGY SSLIAGYGSTQTA Sbjct: 879 SLIAGYGSTQTAGYNSILTAGYGSTQTAQENSDLTTGYGSTSTAGYESSLIAGYGSTQTA 938 Query: 1021 GYESTLTAGYGSTQTAQENSSLTTGYGSTSTAGFASSLIAGYGSTQTAGYKSTLTAGYGS 1080 ++STL AGYGS+QTA+E SSLT GYGSTS AG+ SSLIAGYGSTQTAGY+STLTAGYGS Sbjct: 939 SFKSTLMAGYGSSQTAREQSSLTAGYGSTSMAGYDSSLIAGYGSTQTAGYQSTLTAGYGS 998 Query: 1081 TQTAEYGSSLTAGYGSTATAGQDSSLIAGYGSSLTSGIRSFLTAGYGSTLIAGLRSVLIA 1140 TQTAE+ S+LTAGYGSTATAG DSSLIAGYGSSLTSGIRSFLTAGYGSTLI+GLRSVL A Sbjct: 999 TQTAEHSSTLTAGYGSTATAGADSSLIAGYGSSLTSGIRSFLTAGYGSTLISGLRSVLTA 1058 Query: 1141 GYGSSLTSGIRSTLTAGYGSNQIASYGSSLIAGHESIQVAGNKSMLIAGKGSSQTAGFRS 1200 GYGSSL SG RS+LTAGYGSNQIAS+ SSLIAG ES Q+ GN+SMLIAGKGSSQTAG+RS Sbjct: 1059 GYGSSLISGRRSSLTAGYGSNQIASHRSSLIAGPESTQITGNRSMLIAGKGSSQTAGYRS 1118 Query: 1201 TLIAGAGSVQLAGDRSRLIAGADSNQTAGDRSKLLAGNNSYLTAGDRSKLTGGHDCTLMA 1260 TLI+GA SVQ+AG+R +LIAGADS QTAGDRSKLLAGNNSYLTAGDRSKLT G+DC LMA Sbjct: 1119 TLISGADSVQMAGERGKLIAGADSTQTAGDRSKLLAGNNSYLTAGDRSKLTAGNDCILMA 1178 Query: 1261 GDQSRLTAGKNSILTAGARSKLIGSEGSTLSAGEDSTLIFRLWDGKRYRQLVAKTGENGV 1320 GD+S+LTAG NSILTAG RSKLIGS GSTL+AGE+S LIFR WDGKRY +VAKTG+ G+ Sbjct: 1179 GDRSKLTAGINSILTAGCRSKLIGSNGSTLTAGENSVLIFRCWDGKRYTNVVAKTGKGGI 1238 Query: 1321 EADIPYYVNEDDDIVDKPDE 1340 EAD+PY ++ED++IV+KP+E Sbjct: 1239 EADMPYQMDEDNNIVNKPEE 1258
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 27.5 bits (61), Expect = 0.042 Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 2/34 (5%) Query: 22 GWMMLPII--LSSIAAAGIIIERLWTLRASRITP 53 GW LPI+ LSS+ A + I + + P Sbjct: 227 GWQALPIVLLLSSLVGAFMGIGLILLRNHHQSKP 260
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 67.4 bits (164), Expect = 3e-13 Identities = 58/257 (22%), Positives = 81/257 (31%), Gaps = 21/257 (8%) Query: 859 NAATADAEPVHQETAAEAPVTETSVAETPATEAPVAEKAQTVAE------PTVEAPAVEA 912 N AD V A V E V P A +E +TVAE TVE +A Sbjct: 1001 NNIQADVPSVPSNNEEIARVDEAPVP--PPAPATPSETTETVAENSKQESKTVEKNEQDA 1058 Query: 913 --PVADDAPVAQPA-PEVEVQPAAVEAPAIAAQSELFEAPHAERVVPFKPTPEPAPQAPV 969 A + VA+ A V+ E AQS T E +A V Sbjct: 1059 TETTAQNREVAKEAKSNVKANTQTNE----VAQSGSETKETQTTETKETATVEKEEKAKV 1114 Query: 970 EAAAHEEVPATESSELPTPAPAAVVEPVA-LQEEPAPYV-APQPVVEEQAPAPQEQAPAA 1027 E +EVP S P + V+P A E P V +P + A EQ Sbjct: 1115 ETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKE 1174 Query: 1028 EEAAPAPVVSSTGRAPNDPREVRRRKREEEARRQQEAAAASAPVVEAAPAAAEAESAQPS 1087 + V+ + V + A Q + S+ P S + Sbjct: 1175 TSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNK----PKNRHRRSVRSV 1230 Query: 1088 PAAEEKTEEAATEQPAV 1104 P E ++ ++ V Sbjct: 1231 PHNVEPATTSSNDRSTV 1247 Score = 63.9 bits (155), Expect = 3e-12 Identities = 52/329 (15%), Positives = 100/329 (30%), Gaps = 42/329 (12%) Query: 548 PARANAPVPVEAA-APAPTPAPAPVAHEPSLFKGLVKSLVSLFATKEEPVAPVVVEKP-- 604 P V+ P A V PS + + + E PV P P Sbjct: 983 PEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARV-------DEAPVPPPAPATPSE 1035 Query: 605 ----VAEQRPARNEERRNGRQQS---RGRNNRRDEERKPREERAPREERAERAPREERAP 657 VAE ++ Q + +N +E K + + ++ E + Sbjct: 1036 TTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKE- 1094 Query: 658 REERAPREERTVREPREAREESTPREERPARTTRERKPREAREDRPVRELREPLDAAPAV 717 + +E TV + +A+ E+ +E P + T + P++ + + + + P V Sbjct: 1095 TQTTETKETATVEKEEKAKVETEKTQEVP-KVTSQVSPKQEQSETVQPQAEPARENDPTV 1153 Query: 718 SLAREERPERAPREERQP--RAPREERQPRAEQAAAAVSEEEEVLLNEEQTNNENQEGND 775 ++ + + QP QP E N E T + Sbjct: 1154 NIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVE--NPENTTPATTQ--- 1208 Query: 776 GSEGDRPRRRSRGQRRRSNRRERQRDANGNVIEGSEENGNEEEGSATDLSAGLGFTAAAS 835 P S + NR R + + +E + + N+ A Sbjct: 1209 ------PTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVAL----------CDL 1252 Query: 836 AASSVISAPAEADAHQQAERANSNAATAD 864 +++ + ++A A Q N A + Sbjct: 1253 TSTNTNAVLSDARAKAQFVALNVGKAVSQ 1281 Score = 55.5 bits (133), Expect = 1e-09 Identities = 41/253 (16%), Positives = 70/253 (27%), Gaps = 37/253 (14%) Query: 877 PVTETSVAETPATEAPVAEKAQTVAEPTVEAPAVEAPVADDAPVAQPAPEVEVQPAAVEA 936 P E T Q P+V + E D+APV PAP + A Sbjct: 983 PEVEKRNQTVDTTNITTPNNIQA-DVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVA 1041 Query: 937 PAIAAQSELFEAPHAERVVPFKPTPEPAPQAPVEAAAHEEVPATESSELPTPAPAAVVEP 996 +S+ E T A V A V A + + + E Sbjct: 1042 ENSKQESKTVEKNEQ------DATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKET 1095 Query: 997 VALQEEPAPYVAPQPVVEEQAPAPQEQAPAAEEAAPAPVVSSTGRAPNDPREVRRRKREE 1056 + + V + + + QE + +P ++++ E Sbjct: 1096 QTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSP------------------KQEQSE 1137 Query: 1057 EARRQQEAAAASAPVVEAAPAAA----EAESAQPS--------PAAEEKTEEAATEQPAV 1104 + Q E A + P V + A++ QP+ E T Sbjct: 1138 TVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVE 1197 Query: 1105 KPQHEAEKENEPK 1117 P++ +P Sbjct: 1198 NPENTTPATTQPT 1210 Score = 43.1 bits (101), Expect = 7e-06 Identities = 43/283 (15%), Positives = 76/283 (26%), Gaps = 41/283 (14%) Query: 832 AAASAASSVISAPAEADAHQQAERANSNA-ATADAEPVHQETAAEAPVTETSVAETPATE 890 A + + PA A + E N+ + +++ A E VA+ + Sbjct: 1016 EIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSN 1075 Query: 891 APVAEKAQTVAEPTVEAPAVEAPVADDAPVA-------------QPAPEVEVQPAAVEAP 937 + VA+ E + + Q P+V + Sbjct: 1076 VKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKV-----TSQVS 1130 Query: 938 AIAAQSELFEAPHAERVVPFKPTPEPAPQAPVEAAAHEEVPATESSELPTPAPAAVVEPV 997 QSE P AE P E P ++ + ++ + + V +PV Sbjct: 1131 PKQEQSET-VQPQAE------PARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPV 1183 Query: 998 ALQEEPAPYVAPQPVVEEQAPAPQEQAPAAEEAAPAPVVSSTGRAPNDPREVRRRKREEE 1057 + E A P V+S + N P+ RR Sbjct: 1184 TEST-----------TVNTGNSVVENPENTTPATTQPTVNS--ESSNKPKNRHRRSVRSV 1230 Query: 1058 ARRQQEAAAASAPVVEAAPAAAEAESAQPSPAAEEKTEEAATE 1100 E A S+ A + S + + +A Sbjct: 1231 P-HNVEPATTSSNDRSTV-ALCDLTSTNTNAVLSDARAKAQFV 1271 Score = 35.8 bits (82), Expect = 0.001 Identities = 50/314 (15%), Positives = 84/314 (26%), Gaps = 65/314 (20%) Query: 487 PNDQLETPHFEVQRLRDDSPEAHSSQTSYEIAAAAAEVEEIAPLAAATRTLVRQEAAVKT 546 N + T EV + ++ E +++T A E EE A + V + + + Sbjct: 1074 SNVKANTQTNEVAQSGSETKETQTTETK---ETATVEKEEKAKVETEKTQEVPKVTS-QV 1129 Query: 547 APARANAPVPVEAAAPAPTPAPAPVAHEPSLFKGLVKSLVSLFATKEEPVAPVVVEKPVA 606 +P + + A PA P EP Sbjct: 1130 SPKQEQSETVQPQAEPARENDPTVNIKEPQSQTN----------------------TTAD 1167 Query: 607 EQRPARNEERRNGRQQSRGRNNRRDEERKPREERAPREERAERAPREERAPREERAPREE 666 ++PA+ E N Q P E P + Sbjct: 1168 TEQPAK-ETSSNVEQ--------------PVTESTT----VNTGNSVVENPENTTPATTQ 1208 Query: 667 RTVREPREAREESTPREERPARTTRERKPREAREDRPVRELREPLDAAPAVSLAREERPE 726 TV + ++ R + + DR L + L+ Sbjct: 1209 PTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTNAVLSDA---- 1264 Query: 727 RAPREERQPRAPREERQPRAEQAAAAVSEEEEVLLNEEQTNNENQEGNDGSEGDRPRRRS 786 R + Q A AVS+ +++ + NNE Q S + S Sbjct: 1265 ------------RAKAQFVALNVGKAVSQH----ISQLEMNNEGQYNVWVSNTSMNKNYS 1308 Query: 787 RGQRRRSNRRERQR 800 Q RR + + Q Sbjct: 1309 SSQYRRFSSKSTQT 1322
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 30.2 bits (68), Expect = 0.016 Identities = 38/165 (23%), Positives = 59/165 (35%), Gaps = 23/165 (13%) Query: 45 QFFPSGDSSAALLKTFAVFAVA-FAFRPLGGIFFGMLGDRIGRKKTLAMTILLMAGATTL 103 S D +A A++A+ FA P+ G L DR GR+ L +++ A + Sbjct: 34 DLVHSNDVTAHYGILLALYALMQFACAPVLG----ALSDRFGRRPVLLVSLAGAAVDYAI 89 Query: 104 IGLLPTYAAIGVMAPVLLTIIRCAQGFSAGGEYAGACAYLMEHAPRTQRAWYGSFVPVST 163 + P +L I R G + G A A AY+ + +RA + F+ Sbjct: 90 MATAPFLW--------VLYIGRIVAGIT-GATGAVAGAYIADITDGDERARHFGFMSACF 140 Query: 164 FSAFAAAAVVAYALESLLSTEAMGNWGWRLPFLIAAPLGLVGLYL 208 A V+ MG + PF AA L + Sbjct: 141 GFGMVAGPVLG---------GLMGGFSPHAPFFAAAALNGLNFLT 176 Score = 29.8 bits (67), Expect = 0.025 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 8/80 (10%) Query: 278 TALLVSLIALAFAAALCPLAGAYSDRVGRRVTMATACILLMVVVVPSFLMASSGS----F 333 +L++L AL A P+ GA SDR GRR + + L V +MA++ + Sbjct: 45 YGILLALYALM-QFACAPVLGALSDRFGRRPVL---LVSLAGAAVDYAIMATAPFLWVLY 100 Query: 334 IASIIGVMLLAVGAVLCGVV 353 I I+ + A GAV + Sbjct: 101 IGRIVAGITGATGAVAGAYI 120
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 32.5 bits (74), Expect = 0.003 Identities = 29/129 (22%), Positives = 46/129 (35%), Gaps = 6/129 (4%) Query: 253 LIEKFGLSVASSQLHLFLFLGAVAAGTFFGGPIG----DRIGRKAVIWFSILGAAPFTLA 308 L+ S H + L A F P+ DR GR+ V+ S+ GAA Sbjct: 31 LLRDLVHS-NDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAI 89 Query: 309 LPYADLFWTSVLSVIIGFVLASAFSAIVVYAQELVPGNVGMIAGLFFGLMFGFGGI-GAA 367 + A W + I+ + + + Y ++ G+ F FGFG + G Sbjct: 90 MATAPFLWVLYIGRIVAGITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPV 149 Query: 368 LLGYLADSH 376 L G + Sbjct: 150 LGGLMGGFS 158 Score = 30.9 bits (70), Expect = 0.009 Identities = 63/331 (19%), Positives = 114/331 (34%), Gaps = 18/331 (5%) Query: 25 IIGAVALAHLVNDLIQAILPSIYPMLKASYDLSFTQIGLITLTFQITASLLQPWVGYYTD 84 I+ VAL + LI +LP + L S D++ G++ + + P +G +D Sbjct: 10 ILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAH-YGILLALYALMQFACAPVLGALSD 68 Query: 85 RHPNPLVLPVGSICTLIGIVMMSMVGSFPLILLAAALIGIGSSTFHPEASRIARLASGGR 144 R VL V + +M+ ++ + + GI +T + IA + G Sbjct: 69 RFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADITDGDE 128 Query: 145 ----YGLAQSTFQVGGNTGTAFGPLLAA-AIIIPFGQGNVAWIGLFALFSLGLLYAISRW 199 +G + F G G G L+ + PF A GL L LL + Sbjct: 129 RARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAA-AALNGLNFLTGCFLLPESHKG 187 Query: 200 YRTHLNLFKLKAGQAATHGLSRKRVIASLAVLAFLVFSKFFYMTSLTSYFTFYLIEKFGL 259 R L L R + +A L + F + + + ++F Sbjct: 188 ERRPLRREALNPLA----SFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHW 243 Query: 260 SVASSQLHLFLF--LGAVAAGTFFGGPIGDRIGRKAVIWFSILGAAPFTLALPYADLFWT 317 + + L F L ++A GP+ R+G + + ++ + L F T Sbjct: 244 DATTIGISLAAFGILHSLAQAMIT-GPVAARLGERRALMLGMIADGTGYILL----AFAT 298 Query: 318 SVLSVIIGFVLASAFSAIVVYAQELVPGNVG 348 VL ++ + Q ++ V Sbjct: 299 RGWMAFPIMVLLASGGIGMPALQAMLSRQVD 329
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 231 bits (590), Expect = 3e-74 Identities = 134/396 (33%), Positives = 199/396 (50%), Gaps = 8/396 (2%) Query: 13 PMRFILLILGLDVLGIGLAIPVMPTLIATIWPSSTEHVSLALGVALTLYSAMQFLCAPLL 72 P+ IL + LD +GIGL +PV+P L+ + S V+ G+ L LY+ MQF CAP+L Sbjct: 6 PLIVILSTVALDAVGIGLIMPVLPGLLRDLVHS--NDVTAHYGILLALYALMQFACAPVL 63 Query: 73 GALSDCHGRRPILLLALAGMCLGNLMAGFAGSLTVLLIGRAIAGITAANIATAMAYIADI 132 GALSD GRRP+LL++LAG + + A L VL IGR +AGIT A A A AYIADI Sbjct: 64 GALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADI 123 Query: 133 SEGEQRTHFYGAAGSVIAIALVFGPVIGGGLASYGPHLPFLVAGGLAAINLLYGYMRLPE 192 ++G++R +G + +V GPV+GG + + PH PF A L +N L G LPE Sbjct: 124 TDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPE 183 Query: 193 SLAAEHRRAFEWRRTNPFGSLRGLWSTQGLRPYLLAATCSWFAYGIFQSCFVLANQMRYG 252 S E RR NP S R + + + + +V+ + R+ Sbjct: 184 SHKGE-RRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFH 242 Query: 253 WSMLEVSYALAALALGMAFAQRVLVRKLTPIMSNQRIIVTGYACCLLGYGFYTAAASVWL 312 W + +LAA + + AQ ++ + + +R ++ G GY A W+ Sbjct: 243 WDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWM 302 Query: 313 TVVGMCFHAVGLIAEPALRSELSRHASAGHQGELQGGLTSLLSLVGGVAPVIGALIFAGN 372 M A G I PAL++ LSR QG+LQG L +L SL V P++ I+A + Sbjct: 303 AFPIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAAS 362 Query: 373 VGSGQHVLWLGAPFLVSLLMYVLAIGCIQRGRTSAA 408 + + W G ++ +Y+L + ++RG S A Sbjct: 363 ITT-----WNGWAWIAGAALYLLCLPALRRGLWSGA 393
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 29.8 bits (67), Expect = 0.039 Identities = 26/135 (19%), Positives = 51/135 (37%), Gaps = 21/135 (15%) Query: 415 VFENFEMYKSRINDPDL-----DIDANSVMVLKNCGPKGYPGMAEVGNMGLPAKLLAQGV 469 V + F +++ + DI S VL + +A + ++A+ + Sbjct: 108 VSDMFVSMFESMDNEYMKERAADIRDVSKRVLGHLIGVETGSLATIAE---ETVIIAEDL 164 Query: 470 T--DMVRISDARMSG--TAYGTVVLHVAPEAAAGGPLAVV---------KEGDWIELDCA 516 T D +++ + G T G H A + + AVV + GD + +D Sbjct: 165 TPSDTAQLNKQFVKGFATDIGGRTSHSAIMSRSLEIPAVVGTKEVTEKIQHGDMVIVDGI 224 Query: 517 GGRLHLDIPEAELAA 531 G + ++ E E+ A Sbjct: 225 EGIVIVNPTEEEVKA 239
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 30.2 bits (68), Expect = 0.015 Identities = 29/175 (16%), Positives = 63/175 (36%), Gaps = 11/175 (6%) Query: 242 LLLALFYLPVTLSIYGLGLWLPTLIKQFGGSDLTTGFVSSVPYIFGIIG-LLIVPRSSDR 300 L+A+F++ + LW+ +F T G + I + +I + R Sbjct: 214 ALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAAR 273 Query: 301 LNDR----YGHLAVLYVLGAIGLFCSAWLTMPVAQLAALCVVAFALFSCTAVFWTLPGRF 356 L +R G +A + W+ P+ L A + + A+ Sbjct: 274 LGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLAS--GGIGMPALQAMLSRQVDEE 331 Query: 357 FAGASAAAGIALINSVGNLGGYIGPFVIGALKEITGSLASGLYFLSGVMVFGLLL 411 G + ++ +L +GP + A+ + + +G +++G ++ L L Sbjct: 332 RQGQLQG----SLAALTSLTSIVGPLLFTAIYAASITTWNGWAWIAGAALYLLCL 382
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 42.4 bits (99), Expect = 1e-05 Identities = 33/276 (11%), Positives = 84/276 (30%), Gaps = 14/276 (5%) Query: 736 QQLQAATEASQTAAGHVAEQLKQLEADGQRLEEELTAFTPLVSPQVLEGLRSDASATVLQ 795 L+ + + +L + +E+L S + Sbjct: 67 NTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKL------------RKNDKSLSEKASK 114 Query: 796 LEQQVTQRLDQLEQQHEEQQEQTERQQKIEKQQVEQQTRLHRQTELAQELTRLGEQQQTS 855 +++ ++ D + T KI+ + E+ R+ +L + L Sbjct: 115 IQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTAD 174 Query: 856 QQTLAGLLGDHASAEQWQQALEQTIDQARQAESLAAQALQDIHNQLIQLAAELKSGQQQQ 915 + L + A+ E Q LE+ ++ A + + ++ + + LAA ++ Sbjct: 175 SAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKAL 234 Query: 916 QSLQQELAELDVQISEWRAQHPQLDD--SALDTLLTYDDAHVEQLRVQLNSTDKALEQAK 973 + +I A+ L+ + L+ L ++ + + + Sbjct: 235 EGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALE 294 Query: 974 VLLQERDQRLQQHQAQHSDLTDSAQLATALQQALEQ 1009 + + + Q A L + ++ LE Sbjct: 295 AEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEA 330 Score = 38.9 bits (90), Expect = 1e-04 Identities = 48/304 (15%), Positives = 110/304 (36%), Gaps = 9/304 (2%) Query: 622 LESLTQHDDNEQASAQKAVDLLTEQRNQLREQVGGVIARQKELLRQHEQLTVRHQALAPD 681 LE+ + A + + L + + AR+ +L + E A + Sbjct: 118 LEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAK 177 Query: 682 LESHPLAAQLLDRDADKRDGWLSQQLSQLSEVISRDEQRQQALLTLQKDAARLQQQLQAA 741 +++ L+ + L + L + D + + L + A + L+ A Sbjct: 178 IKTLEAEKAALEARQAE----LEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKA 233 Query: 742 TEASQTAAGHVAEQLKQLEADGQRLEEELTAFTPLVSPQVLEGLRSDASATVLQLEQQVT 801 E + + + ++K LEA+ LE + + + SA + LE + Sbjct: 234 LEGAMNFSTADSAKIKTLEAEKAALEARQAELEKAL--EGAMNFSTADSAKIKTLEAEK- 290 Query: 802 QRLDQLEQQHEEQQEQTERQQKIEKQQVEQQTRLHRQTELAQELTRLGEQQQTSQQTLAG 861 L+ + E Q + ++ ++ ++ +Q E E +L EQ + S+ + Sbjct: 291 AALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLE--AEHQKLEEQNKISEASRQS 348 Query: 862 LLGDHASAEQWQQALEQTIDQARQAESLAAQALQDIHNQLIQLAAELKSGQQQQQSLQQE 921 L D ++ + ++ LE + + ++ + Q + L K ++ + + Sbjct: 349 LRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQVEKALEEANSK 408 Query: 922 LAEL 925 LA L Sbjct: 409 LAAL 412 Score = 34.7 bits (79), Expect = 0.003 Identities = 46/306 (15%), Positives = 101/306 (33%), Gaps = 13/306 (4%) Query: 472 RAKTADQQLTEQRSALELLYREADCEVEAVTEQVQILGSLLQDNRKQQRAFE-ELARLWA 530 + A + T+ ++ + + E + + L + + EL+ Sbjct: 40 VSAVATRSQTDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKE 99 Query: 531 SQQDVDRQLADLSQQQQS---AQQQREQLNSEGLRVRDELTVAEQTLTVTRQLLERQRLA 587 + D+ L++ + + Q + E+ + + +TL + L ++ Sbjct: 100 KLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKAD 159 Query: 588 RSASVEELRVQLQDDQPCPVCGSIEHPWHQPEALLESLTQHDDNEQASAQKAVDLLTEQR 647 ++E D + +A LE+ + A + + Sbjct: 160 LEKALEGAMNFSTADS------AKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKI 213 Query: 648 NQLREQVGGVIARQKELLRQHEQLTVRHQALAPDLESHPLAAQLLD---RDADKRDGWLS 704 L + + AR+ +L + E A + +++ L+ + +K Sbjct: 214 KTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAM 273 Query: 705 QQLSQLSEVISRDEQRQQALLTLQKDAARLQQQLQAATEASQTAAGHVAEQLKQLEADGQ 764 + S I E + AL + D Q L A ++ + E KQLEA+ Q Sbjct: 274 NFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQ 333 Query: 765 RLEEEL 770 +LEE+ Sbjct: 334 KLEEQN 339
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 34.3 bits (78), Expect = 0.001 Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 8/82 (9%) Query: 480 PNSSASPAEQ---NPSRSDQPGTSESLPPDTSGKATSGESTDDEQTTRPPLQSADSPMTG 536 P SPAE NP+ ++ PGT + PD + TD + TRP DSP Sbjct: 327 PLPEVSPAENPANNPAPNENPGTRPNPEPDPDLNPDANPDTDGQPGTRP-----DSPAVP 381 Query: 537 ERRQELEQWLRQIPDDPGELLR 558 +R + R+ +D G L + Sbjct: 382 DRPNGRHRKERKEGEDGGLLCK 403
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.4 bits (68), Expect = 0.033 Identities = 13/81 (16%), Positives = 29/81 (35%), Gaps = 6/81 (7%) Query: 292 DWLVQVPWKAQSKVRLDLARAEAILDADHYGLDEVKERILEYLAVQKRVKKIRGP----- 346 DW+ W ++ L D+ +++ + V ++ P Sbjct: 537 DWVKAQQWDEVPRLEKWLVHVLGKTPDDYKPRRLRYLQLVGKYILMGHVARVMEPGCKFD 596 Query: 347 -VLCLVGPPGVGKTSLAESIA 366 + L G G+GK++L ++ Sbjct: 597 YSVVLEGTGGIGKSTLINTLV 617
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 116 bits (292), Expect = 7e-38 Identities = 44/88 (50%), Positives = 61/88 (69%) Query: 2 NKSELIDAIAASADIPKAAAGRALDAVIESVTGALKAGDSVVLVGFGTFSVTDRPARIGR 61 NK +LI +A + ++ K + A+DAV +V+ L G+ V L+GFG F V +R AR GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGR 62 Query: 62 NPQTGKTLEIAAAKKPGFKAGKALKEAV 89 NPQTG+ ++I A+K P FKAGKALK+AV Sbjct: 63 NPQTGEEIKIKASKVPAFKAGKALKDAV 90
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 59.5 bits (144), Expect = 8e-12 Identities = 78/350 (22%), Positives = 140/350 (40%), Gaps = 18/350 (5%) Query: 28 FATVTTEFLPVGL----LPDIARDL---GTSISQTGLMMAVPGILAAISAPSCIALFSHV 80 +TV + + +GL LP + RDL + G+++A+ ++ AP AL Sbjct: 11 LSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRF 70 Query: 81 DRKRLLLGLLSILLASNLIVALSTHFWLTLAGRVLLGFALGGFWTIAGSLGPRLRPGKEG 140 R+ +LL L+ I+A + W+ GR++ G G +AG+ + G E Sbjct: 71 GRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGIT-GATGAVAGAYIADITDGDER 129 Query: 141 VKATAYVLAGVSIGTVAGIPAGTLIGEAFGWRAAFETAAVVTVAVGVLIATFLP-ALPGE 199 + ++ A G VAG G L+G F A F AA + + LP + GE Sbjct: 130 ARHFGFMSACFGFGMVAGPVLGGLMGG-FSPHAPFFAAAALNGLNFLTGCFLLPESHKGE 188 Query: 200 RSAGISQMLSLAGEQRIRRMFAAALLIYVGHFAAY-------TYLAPFVQEFAHIQGQAL 252 R + L+ R R + F F ++ H + Sbjct: 189 RRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTI 248 Query: 253 GALLFAFGLA-AVAGNLAGGALAARSAPSSVLIMTLLMLGSLTALLMFVGNPWLLWPVIL 311 G L AFG+ ++A + G +AAR L++ ++ G+ LL F W+ +P+++ Sbjct: 249 GISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMV 308 Query: 312 VWGFAFGMIPITTQIWCFEASNDRVEGVQALLVCVVNLSIGGGAFIGGAV 361 + +P + + +R +Q L + +L+ G + A+ Sbjct: 309 LLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAI 358
>FRAGILYSIN#Fragilysin metallopeptidase (M10C) enterotoxin signature. Length = 405 Score = 27.7 bits (61), Expect = 0.022 Identities = 22/94 (23%), Positives = 32/94 (34%), Gaps = 20/94 (21%) Query: 68 QEEMFVIIEGEGSLRVAGEMLPI-----KAGDVLFIPAGADYPHQIINTSQAPLKYLSIS 122 ++E F I + +++ + KA +L +P DY + I T Q P Sbjct: 159 EKEAFECIYDSRTRSAGKDIVSVKINIDKAKKILNLPE-CDYINDYIKTPQVPHGITESQ 217 Query: 123 TRETPEVCEYP-----------DSGKYQAMVSVQ 145 TR P P S Y VS Q Sbjct: 218 TRAVP---SEPKTVYVICLRENGSTIYPNEVSAQ 248
>CABNDNGRPT#NodO calcium binding signature. Length = 479 Score = 66.1 bits (161), Expect = 9e-14 Identities = 46/159 (28%), Positives = 65/159 (40%), Gaps = 16/159 (10%) Query: 13 LDEQITFHKRPSFNTYTGTSGDDALAGTYWDDHLLGGAGDDTLDGHSGSDTLIGGAGVDT 72 L ++ + G SG+D L G D+ L GGAG+D L G +G+DTL GGAG DT Sbjct: 328 LKGNVSIAHGVTIENAIGGSGNDILVGNSADNILQGGAGNDVLYGGAGADTLYGGAGRDT 387 Query: 73 LTGGETYGYGVKFVFTSLTDSYANAQGSHSDLITSFSEYDVLDLTTLHLERIGN----GH 128 FV+ S DS A +D + D+ G Sbjct: 388 ------------FVYGSGQDSTVAAYDWIADFQKGIDKIDLSAFRNEGQLSFVQDQFTGK 435 Query: 129 NGDLAVSYDAASDITYLRSLDKDASGNFFEVRLAGDYQG 167 ++ + +DAA+ IT L + S F VR+ G Sbjct: 436 GQEVMLQWDAANSITNLWLHEAGHSSVDFLVRIVGQAAQ 474 Score = 56.5 bits (136), Expect = 1e-10 Identities = 36/129 (27%), Positives = 50/129 (38%), Gaps = 7/129 (5%) Query: 340 DADQTLTGKPGWDSLHTQDAGGVLIGGGAGDALTGGSGVDTFRYLDSSDSVHGAADLIKN 399 + L G + L VL GG D L GG+G DTF Y DS A D I + Sbjct: 347 SGNDILVGNSADNILQGGAGNDVLYGGAGADTLYGGAGRDTFVYGSGQDSTVAAYDWIAD 406 Query: 400 FDVAHDKIDVAALGYTGLGD-------GTNGTLKLVYDKELHHTYLKDYDLNADGQRFEI 452 F DKID++A G G + L +D T L ++ F + Sbjct: 407 FQKGIDKIDLSAFRNEGQLSFVQDQFTGKGQEVMLQWDAANSITNLWLHEAGHSSVDFLV 466 Query: 453 GLVGTFTKT 461 +VG ++ Sbjct: 467 RIVGQAAQS 475
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 26.7 bits (59), Expect = 0.035 Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 4/28 (14%) Query: 19 ISLSSVGSRSPVVEKHV----SIAELCE 42 + SPV EKH+ ++ ELC Sbjct: 93 YRQQDLVDYSPVSEKHLADGMTVGELCA 120
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 75.3 bits (185), Expect = 1e-18 Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 6/123 (4%) Query: 6 RILIIDDQRPNLDLMEQLLAREGLTNVL-SSTEPLRTLDLFNSFEPDLVVLDLHMPEFDG 64 IL+ DD ++ Q L+R G + S+ L + + DLVV D+ MP+ + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATL--WRWIAAGDGDLVVTDVVMPDENA 62 Query: 65 FAVLEQLNRRIPANDYLPIMVLTADATRDTRLRALALGARDFISKPLDALETMLRIWNLL 124 F +L ++ + P LP++V++A T T ++A GA D++ KP D E + I L Sbjct: 63 FDLLPRIKKARP---DLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119 Query: 125 ETR 127 Sbjct: 120 AEP 122
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 59.1 bits (143), Expect = 3e-11 Identities = 23/123 (18%), Positives = 52/123 (42%), Gaps = 3/123 (2%) Query: 657 GKLLCIEDNLSSMALIETLLQRRPGIQLLSSMQGQLGLDLARQHAPQLILLDLNLPDIKG 716 +L +D+ + ++ L R G + + L++ D+ +PD Sbjct: 4 ATILVADDDAAIRTVLNQALSRA-GYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 717 LEVLQRLRQLPATAQTPVLMITADTSDKAHRELKQAGATAIVIKPIQVPVFLALLDQYLP 776 ++L R+++ A PVL+++A + + + GA + KP + + ++ + L Sbjct: 63 FDLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 777 EPT 779 EP Sbjct: 121 EPK 123
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 57.9 bits (140), Expect = 5e-12 Identities = 24/115 (20%), Positives = 43/115 (37%), Gaps = 2/115 (1%) Query: 6 RLVLADDHEVTRTGFVSLLAGHPEFEVVGQAADGQQAIDLCQELQPDIAILDIRMPVLNG 65 +++ADD RT L+ V ++ D+ + D+ MP N Sbjct: 5 TILVADDDAAIRTVLNQALSR--AGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 66 LGAARILQQRMPGLKVVIFTMDDSTDHLEAAMSAGAVGYLLKDASRDEVIDGLQR 120 +++ P L V++ + ++ A GA YL K E+I + R Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 29.5 bits (66), Expect = 0.004 Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 5/80 (6%) Query: 38 SNVNDKEIAGLFDRWNKALQTGNSTTVASLYAPDAVLQPTVSNKVRATPAEIKDYFDKFL 97 +N +D+ L D W AL +TT S A DAV Q V +I D + Sbjct: 5 NNPSDENTGALDDLWADALNEQKATTTKS--AADAVFQQLGGGDVSGAMQDIDLIMDIPV 62 Query: 98 ALK-PIG--EINYREIRRLG 114 L +G + +E+ RL Sbjct: 63 KLTVELGRTRMTIKELLRLT 82
>adhesinb#Adhesin B signature. Length = 310 Score = 54.1 bits (130), Expect = 1e-10 Identities = 26/118 (22%), Positives = 43/118 (36%), Gaps = 3/118 (2%) Query: 148 WLASNNMGRMADVLAADLVRLAPAAKPKIEANLAAFKQQLLKLSASSEAALA--GADNLS 205 WL N A +A L PA K E NL A+ ++L L ++ + Sbjct: 142 WLNLENGIIYAQNIAKRLSEKDPANKETYEKNLKAYVEKLSALDKEAKEKFNNIPGEKKM 201 Query: 206 VVSLSDRFGYLISGLNLELIDTQAL-TDEQWTPEALSKLSATLKDNDVALVLDHRQPP 262 +V+ F Y N+ + T+E+ TP+ + L L+ V + Sbjct: 202 IVTSEGCFKYFSKAYNVPSAYIWEINTEEEGTPDQIKTLVEKLRKTKVPSLFVESSVD 259
>ADHESNFAMILY#Adhesin family signature. Length = 309 Score = 172 bits (438), Expect = 5e-54 Identities = 76/304 (25%), Positives = 138/304 (45%), Gaps = 11/304 (3%) Query: 10 LLRVLLTGLMVALLAPSGFAAEPAKRLRIGITLHPYYSYVSNIVGDKADVVPLIPAGFNP 69 LL + L+ +++ A ++L++ T NI GDK D+ ++P G +P Sbjct: 7 LLVLFLSAIILVACASGKKDTTSGQKLKVVATNSIIADITKNIAGDKIDLHSIVPIGQDP 66 Query: 70 HAYEPRAEDIKRIGSLDVIVLNGV-----GHDDFADRMIAASETPNIKTIEANADVPLLA 124 H YEP ED+K+ D+I NG+ G+ F + A +T N + V ++ Sbjct: 67 HEYEPLPEDVKKTSEADLIFYNGINLETGGNAWFTKLVENAKKTENKDYFAVSDGVDVIY 126 Query: 125 ATGVAARGAGKVVNPHTFLSISASIAQVNNIARELGKLDPDNAKTYTANARAYGKRLRQM 184 G +G +PH +L++ I NIA++L DP+N + Y N + Y +L ++ Sbjct: 127 LEGQNEKGKE---DPHAWLNLENGIIFAKNIAKQLSAKDPNNKEFYEKNLKEYTDKLDKL 183 Query: 185 RADALAKLTKAPNADLRVATVHAAYDYLLREFGLEVTAVVEPAHGIEPSPSQLKKTIDQL 244 ++ K K P + T A+ Y + +G+ + E E +P Q+K +++L Sbjct: 184 DKESKDKFNKIPAEKKLIVTSEGAFKYFSKAYGVPSAYIWEINTEEEGTPEQIKTLVEKL 243 Query: 245 RELDVKVIFSEMDFPSTYVETIQRESGVRLY-PLSHISYGEY--TADKYEKEMAGNLDTV 301 R+ V +F E ++T+ +++ + +Y + S E D Y M NLD + Sbjct: 244 RQTKVPSLFVESSVDDRPMKTVSQDTNIPIYAQIFTDSIAEQGKEGDSYYSMMKYNLDKI 303 Query: 302 VRAI 305 + Sbjct: 304 AEGL 307
>PF06580#Sensor histidine kinase Length = 349 Score = 36.8 bits (85), Expect = 1e-04 Identities = 23/131 (17%), Positives = 43/131 (32%), Gaps = 29/131 (22%) Query: 222 GDDVQYEGQCKPLKTQPMALRSCLQNLVDNALRYA-------GSARIVIEDSADHVRISV 274 D +Q+E Q P +Q LV+N +++ G + V + V Sbjct: 237 EDRLQFENQINPAIMDVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEV 296 Query: 275 VDHGPGIAPEFHETVFEPFFRLESSRNRNSGGIGMGMSIAREAARRIGGE---LSLAQTP 331 + G E G G+ RE + + G + L++ Sbjct: 297 ENTGSLALKNTKE------------------STGTGLQNVRERLQMLYGTEAQIKLSEKQ 338 Query: 332 GGGLTAILVLP 342 G A++++P Sbjct: 339 GKV-NAMVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 89.1 bits (221), Expect = 2e-22 Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 1/130 (0%) Query: 31 RALIVDDDVAIRELLCDYLTRFNINARGVTDGTQMRQALTDETFDVVVLDLMLPGEDGLS 90 L+ DDD AIR +L L+R + R ++ + + + D+VV D+++P E+ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 91 LCRWLRST-SDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARIQTILRRVRD 149 L ++ D+P+L+++A+ I E GA DY+ KPF+ EL+ I L + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 150 ERSDQRTTIR 159 S + Sbjct: 125 RPSKLEDDSQ 134
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 277 bits (710), Expect = 2e-83 Identities = 202/735 (27%), Positives = 316/735 (42%), Gaps = 68/735 (9%) Query: 56 GNLTANGATTLQISTITGAKLTLTGSQVSAGTSSSAVSLTGADALIV-GSVLTGGADGLG 114 G L + L S + +T S + +AVS+ GA L + G +TGG Sbjct: 186 GALQSLQPEDLPPSRVVLRDTNVTAVPASG--APAAVSVLGASELTLDGGHITGGRAAGV 243 Query: 115 MGNESARLVGSTATVIGSTITATNRGINAGSLSNLTLEG----TSVTATGANGRGMEMWD 170 + A + AT+ A + G++ + G G+++ Sbjct: 244 AAMQGAVVHLQRATIRRGDAPAGG-AVPGGAVPGGAVPGGFGPGGFGPVLDGWYGVDVSG 302 Query: 171 STVKASGSTITGQQYGVRLRA-----------DPAVPSSNQLVLDGTRVEGITGSALIVG 219 S+V+ + S + + G +R + P N + G R + L + Sbjct: 303 SSVELAQSIVEAPELGAAIRVGRGARVTVSGGSLSAPHGNVIETGGARRFAPQAAPLSIT 362 Query: 220 MPTGAPATADIRVNNGSTLTGGNGRILELINGSTAHMTVDNSHLLGDVSADAGSTASLSL 279 + GA A + L L G+ A + + L G ++L Sbjct: 363 LQAGAHAQGKALLYRVLPEP----VKLTLTGGADAQGDIVATELPSIPGTSIGPL-DVAL 417 Query: 280 QNNATLTGRLENVSSLSLSSQGQWVMVENGQVNALAMDG-GSVRF---GDAASFYTLSLA 335 + A TG V SLS+ + WVM +N V AL + GSV F +A F L++ Sbjct: 418 ASQARWTGATRAVDSLSIDN-ATWVMTDNSNVGALRLASDGSVDFQQPAEAGRFKVLTVN 476 Query: 336 SLSGSGTFMMDVDFAGKANDFLDITGSATGSHTLLVGSTGVDPLSDTSLHVVHA-AAGDA 394 +L+GSG F M+V +D L + A+G H L V ++G +P S +L +V A Sbjct: 477 TLAGSGLFRMNVFADLGLSDKLVVMQDASGQHRLWVRNSGSEPASANTLLLVQTPLGSAA 536 Query: 395 SFSLA--GGAVDLGAWSYDLIKQGDNDWYLD----------------------------- 423 +F+LA G VD+G + Y L G+ W L Sbjct: 537 TFTLANKDGKVDIGTYRYRLAANGNGQWSLVGAKAPPAPKPAPQPGPQPPQPPQPQPEAP 596 Query: 424 ----TATRTISPGAQTVM--ALFNTAPTVWYGEVSTLRSRMGELRMDEARSGGWIRTYGN 477 A R +S A + A T+WY E + L R+GELR++ G W R + Sbjct: 597 APQPPAGRELSAAANAAVNTGGVGLASTLWYAESNALSKRLGELRLNPDAGGAWGRGFAQ 656 Query: 478 KFNVADASGFGYQQVQSGVALGADGKLPVGAGQWLAGVMIGQSTSDLSLDHGASGKVDSY 537 + + + +G + Q +G LGAD + V G+W G + G + D G DS Sbjct: 657 RQQLDNRAGRRFDQKVAGFELGADHAVAVAGGRWHLGGLAGYTRGDRGFTGDGGGHTDSV 716 Query: 538 SLGAYSTWLNSESGYYIDGVIKLNQFKNKARVNLSDGSRTRGNYDNLGVGASLELGRHIK 597 +G Y+T++ +SG+Y+D ++ ++ +N +V SDG +G Y GVGASLE GR Sbjct: 717 HVGGYATYIA-DSGFYLDATLRASRLENDFKVAGSDGYAVKGKYRTHGVGASLEAGRRFT 775 Query: 598 LDNGYFLEPYTQLAGLVVQGKDYALDNGMRAEGDRSRSLLGKVGTTAGRSFDLGKGRTLQ 657 +G+FLEP +LA G Y NG+R + S+LG++G G+ +L GR +Q Sbjct: 776 HADGWFLEPQAELAVFRAGGGAYRAANGLRVRDEGGSSVLGRLGLEVGKRIELAGGRQVQ 835 Query: 658 PYVRVAVAHEFVNRNEVKVNDNVFNNDLSGSRGELGTGVSVSLSDNLQLHADFDYSNGDA 717 PY++ +V EF V N +L G+R ELG G++ +L L+A ++YS G Sbjct: 836 PYIKASVLQEFDGAGTVHTNGIAHRTELRGTRAELGLGMAAALGRGHSLYASYEYSKGPK 895 Query: 718 IEQPWGASAGLRYSW 732 + PW AG RYSW Sbjct: 896 LAMPWTFHAGYRYSW 910
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 32.7 bits (74), Expect = 0.004 Identities = 43/189 (22%), Positives = 62/189 (32%), Gaps = 39/189 (20%) Query: 157 KTAPVFKDEGALIFPEE--IIRDGLTAAWLDTHGDTVLAEVPAYFSPGAGDLII--WYWS 212 + A V +GA++ + I R A G VP F PG ++ WY Sbjct: 239 RAAGVAAMQGAVVHLQRATIRRGDAPAGGAVPGGAVPGGAVPGGFGPGGFGPVLDGWYGV 298 Query: 213 SMPTGSEHTGTLTLEASDIGGAINIGFGRQV-------------VLESGDGIRY------ 253 + S +EA ++G AI +G G +V V+E+G R+ Sbjct: 299 DVSGSSVELAQSIVEAPELGAAIRVGRGARVTVSGGSLSAPHGNVIETGGARRFAPQAAP 358 Query: 254 VSYRLKDRSGNAGPRALAVALLVCAQPVPRVLP-----------PPRVQKAAGSASASRL 302 +S L+ G A ALL P P L + S L Sbjct: 359 LSITLQA-----GAHAQGKALLYRVLPEPVKLTLTGGADAQGDIVATELPSIPGTSIGPL 413 Query: 303 DPVDAFQGA 311 D A Q Sbjct: 414 DVALASQAR 422
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 786 bits (2032), Expect = 0.0 Identities = 269/869 (30%), Positives = 427/869 (49%), Gaps = 55/869 (6%) Query: 10 IPVRLRFMQVLIVCGSVTVPLELTKAATPVKFQSGFLRQGQDYDSEAAASVLNQLSVVEN 69 + F+++ + C ++ + F FL D A + L++ + Sbjct: 21 HRLAGFFVRLFVACAFAAQ---APLSSAELYFNPRFLA-----DDPQAVADLSRFENGQE 72 Query: 70 LGPGDHWVEIHVNMRHFGQRQIRFDADPQGNGLLPCLSRELLEQIGVRLDSLADPALLQ- 128 L PG + V+I++N + R + F+ G++PCL+R L +G+ S++ LL Sbjct: 73 LPPGTYRVDIYLNNGYMATRDVTFNTGDSEQGIVPCLTRAQLASMGLNTASVSGMNLLAD 132 Query: 129 VACVALGQLIPDAKVVLDGGRLQLSISIPQIAMRRDANGRVDPALWDYGINAAFINYQTS 188 ACV L +I DA LD G+ +L+++IPQ M A G + P LWD GINA +NY S Sbjct: 133 DACVPLTSMIHDATAQLDVGQQRLNLTIPQAFMSNRARGYIPPELWDPGINAGLLNYNFS 192 Query: 189 AQQTTHRETGTSSSADLYLNTGINLGSWRLRSNQS-----VRQDAQGHREWTRAYAYAQR 243 +R G S A L L +G+N+G+WRLR N + + +W + +R Sbjct: 193 GNSVQNRIGGNSHYAYLNLQSGLNIGAWRLRDNTTWSYNSSDSSSGSKNKWQHINTWLER 252 Query: 244 DLPGTHANLTLGETYTGGDVFRSVPIKGGLIKTDQEMLPDSLQGYAPVIRGVAQSRAKLE 303 D+ + LTLG+ YT GD+F + +G + +D MLPDS +G+APVI G+A+ A++ Sbjct: 253 DIIPLRSRLTLGDGYTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQVT 312 Query: 304 VLQNGYPIYSTYVSAGPYEIDDLN-TAGSGELEIVLTEADGQVRRFTQPYSTMSNLLREG 362 + QNGY IY++ V GP+ I+D+ SG+L++ + EADG + FT PYS++ L REG Sbjct: 313 IKQNGYDIYNSTVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQREG 372 Query: 363 VWKYSAALGRF-NGAYATDHPWLWQGTLAVGTGWNSTLYGGLMTSDFYHAAALGVSRDMG 421 +YS G + +G + P +Q TL G T+YGG +D Y A G+ ++MG Sbjct: 373 HTRYSITAGEYRSGNAQQEKPRFFQSTLLHGLPAGWTIYGGTQLADRYRAFNFGIGKNMG 432 Query: 422 MLGAMAFDVTRSRAGIDQPGQSSVQGMSYAIKYGKAFT-THTNLRFAGYRYSTAGYRDFD 480 LGA++ D+T++ + + P S G S Y K+ + TN++ GYRYST+GY +F Sbjct: 433 ALGALSVDMTQANSTL--PDDSQHDGQSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFA 490 Query: 481 EAVSQRSNDDAFRG-------------------SRRSRLEASIHQRIGARSSVGLTLSQQ 521 + R N ++R +L+ ++ Q++G S++ L+ S Q Sbjct: 491 DTTYSRMNGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRTSTLYLSGSHQ 550 Query: 522 NYWGSDIEQRQFQFNFNTHRAGITYNFYASQSLSVASNRGNDRQFGLSISMPLDTGHSSN 581 YWG+ QFQ NT I + S + + A +G D+ L++++P S+ Sbjct: 551 TYWGTSNVDEQFQAGLNTAFEDINWTLSYSLTKN-AWQKGRDQMLALNVNIPFSHWLRSD 609 Query: 582 ATLDLQ----------SSANRHSQRGSLSGSLYE-NRVNYHASLSNDDGK----QQSASL 626 + + R + + G+L E N ++Y G + Sbjct: 610 SKSQWRHASASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGDGNSGSTGYA 669 Query: 627 AAGYQAPFASLGAGVTQGNDYRSTSVNASGALLLHADGIEFGPNLGDTIALVEVPDTPGV 686 Y+ + + G + +D + SG +L HA+G+ G L DT+ LV+ P Sbjct: 670 TLNYRGGYGNANIGYSHSDDIKQLYYGVSGGVLAHANGVTLGQPLNDTVVLVKAPGAKDA 729 Query: 687 GIQNATGVRTNSRGYALMPYLRPYRYNPIALQTDRLGPEVEIDNASAQVVPARGAVIKTT 746 ++N TGVRT+ RGYA++PY YR N +AL T+ L V++DNA A VVP RGA+++ Sbjct: 730 KVENQTGVRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVPTRGAIVRAE 789 Query: 747 FAARTVTRLVINATTPSGKPLPFGARVSDAQGNILGIAGQGGQILLSTDMQAQTLDVHWG 806 F AR +L++ T + KPLPFGA V+ GI GQ+ LS A + V WG Sbjct: 790 FKARVGIKLLMTL-THNNKPLPFGAMVTSESSQSSGIVADNGQVYLSGMPLAGKVQVKWG 848 Query: 807 EKSDPQCRLHIDPAGMPLAQGYRMQDMTC 835 E+ + C + Q C Sbjct: 849 EEENAHCVANYQLPPESQQQLLTQLSAEC 877
>MICOLLPTASE#Microbial collagenase metalloprotease (M9) signature. Length = 1104 Score = 31.2 bits (70), Expect = 0.035 Identities = 26/130 (20%), Positives = 43/130 (33%), Gaps = 11/130 (8%) Query: 582 PSIDFTVLDDVFSRAGGLAQDATVTGMTPHLHGRNPMATNTLNNLTEWMKDPANNV--MW 639 P++ + F R G AQD V + L G +NN + D +N+ Sbjct: 194 PAMKAIQYNSNF-RLGTKAQDGVVEALG-RLIGNASADPEVINNCIYVLSDFKDNIDKYG 251 Query: 640 GWDSIAAMARGKVNNLLLQEYIARFSSNAYLQPVSGEVALSDGFKENIHNFILDAPRLAF 699 S K N + + +N+ + G A + F I ++ L Sbjct: 252 SNYS-------KGNAVFNLMKGIDYYTNSVIYNTKGYDAKNTEFYNRIDPYMERLESLCT 304 Query: 700 TNDNLGQSHA 709 D L +A Sbjct: 305 IGDKLNNDNA 314
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 95.3 bits (237), Expect = 8e-25 Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 1/130 (0%) Query: 3 QATTILVIDDEPQIRKFLRISLASQGYKVLEAATGAEGLTQAALNKPDLLVLDLGLPDMD 62 TILV DD+ IR L +L+ GY V + A A DL+V D+ +PD + Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 63 GQQVLSEFREWSA-VPVLVLSVRASEAQKVQALDAGANDYVTKPFGIQEFLARVRALLRQ 121 +L ++ +PVLV+S + + ++A + GA DY+ KPF + E + + L + Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 122 ASGSDKPESA 131 Sbjct: 122 PKRRPSKLED 131
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 30.2 bits (68), Expect = 0.010 Identities = 10/43 (23%), Positives = 20/43 (46%) Query: 103 DEINRATPKSQSALLEAMEEGQVSIEGATRLLPDPFFVIATQN 145 DEI +Q+ LL +++G+ + G + ++A N Sbjct: 238 DEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATN 280
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 114 bits (286), Expect = 6e-37 Identities = 34/89 (38%), Positives = 54/89 (60%) Query: 5 TKAEMAERLYEELGLNKREAKELVELFFEEIRHALEDNEQVKLSGFGNFDLRDKRQRPGR 64 K ++ ++ E L K+++ V+ F + L E+V+L GFGNF++R++ R GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGR 62 Query: 65 NPKTGEEIPITARRVVTFRPGQKLKARVE 93 NP+TGEEI I A +V F+ G+ LK V+ Sbjct: 63 NPQTGEEIKIKASKVPAFKAGKALKDAVK 91
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 27.8 bits (62), Expect = 0.036 Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 7/85 (8%) Query: 19 VKADNSGVDLANVKM---SMNPFCEIAVEEAVRLKEKGVATEIVVVSIGPSTAQEQLRTA 75 VKA+ G + + + + F + +EEA+ L+E+G I+++ G AQ+ Sbjct: 34 VKANAYGHGIERIWSAIGATDGFALLNLEEAITLRERGWKGPILMLE-GFFHAQD---LE 89 Query: 76 LALGADRAILVESAEDLTSLAVAKL 100 + V S L +L A+L Sbjct: 90 IYDQHRLTTCVHSNWQLKALQNARL 114
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 41.0 bits (96), Expect = 6e-06 Identities = 51/318 (16%), Positives = 111/318 (34%), Gaps = 27/318 (8%) Query: 55 FFPKGDTTSQLLATAGVFAVGFFMRPLGGWIFGWIADTRGRKVSMIISVFMMCAGSLLIA 114 D T+ ++A M+ + G ++D GR+ +++S+ ++A Sbjct: 35 LVHSNDVTAHYGILLALYA---LMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMA 91 Query: 115 VMPTYETIGVAAPVLLVVARLIQGLSVGAEYGTGATYISEIATPGRRCFYGSFQYFTIIA 174 P +L + R++ G++ GA YI++I R + F Sbjct: 92 TAPFLW--------VLYIGRIVAGIT-GATGAVAGAYIADITDGDERARHFGFMSACFGF 142 Query: 175 GQLLALMTVVILQQTLTGEELREWGWRIPFFIGAFSSIV-VVYLRRAMHET--ATKKEMN 231 G + + G + + PFF A + + + + E+ ++ + Sbjct: 143 GMVAG---------PVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLR 193 Query: 232 RKDAGSLRGMF--KHKRAVALVVAFTIGGSLYFYTFTTYMQKFLVISAGFSPETVSFIMT 289 R+ L + VA ++A L F + T+ + Sbjct: 194 REALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLA 253 Query: 290 A-ALVGFMFCQPLFGLLADRIGIKVHMLLFSGLAMLLVIPLLYSLQSVSSPFTAFLLVFG 348 A ++ + + G +A R+G + ++L I L ++ + + LL G Sbjct: 254 AFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASG 313 Query: 349 GLAIASLYTPIAGIVKAE 366 G+ + +L ++ V E Sbjct: 314 GIGMPALQAMLSRQVDEE 331
>PF07299#Fibronectin-binding protein (FBP) Length = 219 Score = 30.6 bits (69), Expect = 0.005 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 7/47 (14%) Query: 253 CAICGSHDS---FLDELILDDAGTQ----SFVCSDTDYCAQRVKQQE 292 C++C H+ FL E+ D GT +++C D C Q +K + Sbjct: 162 CSLCHGHEEVGMFLVEIKGDIPGTFVKKGNYICKDGVACNQNMKSLD 208
>PF05272#Virulence-associated E family protein Length = 892 Score = 33.9 bits (77), Expect = 5e-04 Identities = 14/37 (37%), Positives = 18/37 (48%) Query: 26 VLRGLNFSVRAGECLVLSGQSGAGKSTLLRTLYGNYL 62 V R + + +VL G G GKSTL+ TL G Sbjct: 585 VARVMEPGCKFDYSVVLEGTGGIGKSTLINTLVGLDF 621
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 49.4 bits (118), Expect = 2e-08 Identities = 45/191 (23%), Positives = 66/191 (34%), Gaps = 19/191 (9%) Query: 31 LVVALGITWLLDGLEVTLAGSV-AGALKASPALNLSNSDIGLAGAAYIAGAVLGALFFGW 89 L+V L LD + + L V G L+ N + G+ A Y A G Sbjct: 7 LIVILSTV-ALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGA 65 Query: 90 LADRLGRRKLFFITLLLYVGATAATAFSFSMWSFMLFRFLTGMGIGGEYTAINSTIQEFT 149 L+DR GRR + ++L A A + +W + R + G+ G + I + T Sbjct: 66 LSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGI-TGATGAVAGAYIADIT 124 Query: 150 P----ARYRGWVDLTINGTFWLGAALGAIGSIVLLDPLWVGAELGWRLCFGIGAVLGLLV 205 AR+ G++ G LG + F A L L Sbjct: 125 DGDERARHFGFMSACFGFGMVAGPVLGG-----------LMGGFSPHAPFFAAAALNGLN 173 Query: 206 LLMR-LWLPES 215 L LPES Sbjct: 174 FLTGCFLLPES 184 Score = 30.9 bits (70), Expect = 0.010 Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 1/73 (1%) Query: 62 LNLSNSDIGLAGAAY-IAGAVLGALFFGWLADRLGRRKLFFITLLLYVGATAATAFSFSM 120 + + IG++ AA+ I ++ A+ G +A RLG R+ + ++ AF+ Sbjct: 241 FHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRG 300 Query: 121 WSFMLFRFLTGMG 133 W L G Sbjct: 301 WMAFPIMVLLASG 313
>PF06776#Invasion associated locus B Length = 214 Score = 28.0 bits (62), Expect = 0.017 Identities = 8/46 (17%), Positives = 13/46 (28%), Gaps = 1/46 (2%) Query: 16 ARSMSRTVAIAFACLLSTTAHAACPAATPVDTAGWIYEKHQDFYLN 61 R R A A + + D G + H D+ + Sbjct: 42 RRLARRNGARLMLAGAMAIALSFGWS-DRADAQGAVRSVHGDWQIR 86
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 36.1 bits (83), Expect = 1e-05 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Query: 12 QRGFTLLEMLAASTLMAICSTAVLVAFGQSVHSLSQAEQSDRLTEA 57 QRGFTLLEM+ LM + + VL+AF S S A+ R Sbjct: 3 QRGFTLLEMMLILLLMGVSAGMVLLAFPASRDD-SAAQTLARFEAQ 47
>INFPOTNTIATR#Macrophage infectivity potentiator signature. Length = 233 Score = 83.5 bits (206), Expect = 4e-23 Identities = 47/116 (40%), Positives = 62/116 (53%), Gaps = 2/116 (1%) Query: 4 RAATGSIAMSKELQITDLHLGEGKAAVKGALITTHYTGTLEDGTVFDSSHERGKPFQCVI 63 ++ G + + LQ + G G K +T YTGTL DGTVFDS+ + GKP Sbjct: 116 KSKPGIVVLPSGLQYKIIDAGTGAKPGKSDTVTVEYTGTLIDGTVFDSTEKAGKP--ATF 173 Query: 64 GTGRVIKGWDQGLMGMKVGGKRQLFVPAHLAYGDRSMGAHIKPGADLTFEIELLEV 119 +VI GW + L M G ++FVPA LAYG RS+G I P L F+I L+ V Sbjct: 174 QVSQVIPGWTEALQLMPAGSTWEVFVPADLAYGPRSVGGPIGPNETLIFKIHLISV 229
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 29.3 bits (65), Expect = 0.013 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 17/61 (27%) Query: 136 HHTFMGVVHGDLHPGNIIFES----------GLEDWLTRRP-------EFPEVRILDLGA 178 H GVVH D+ PGN++F+ GL +P + PE+ + +LGA Sbjct: 260 HLAKAGVVHNDIKPGNVVFDRASGEPVVIDLGLHSRSGEQPKGFTESFKAPELGVGNLGA 319 Query: 179 S 179 S Sbjct: 320 S 320
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 34.8 bits (80), Expect = 0.001 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 8/67 (11%) Query: 574 QKESLRRALMELSDENPQFRALYRYVNRESHADSINLTDFGEIDPHAFIQRFREVFVKTN 633 Q+E L AL+E+SD +P R YV+ +H ++ G++ +E + + Sbjct: 357 QREMLLDALLEISDSDPLLRY---YVDSATHEIILSF--LGKVQMEVTCALLQEKY---H 408 Query: 634 FEAHFDK 640 E + Sbjct: 409 VEIEIKE 415
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 36.0 bits (83), Expect = 2e-04 Identities = 12/121 (9%), Positives = 43/121 (35%), Gaps = 6/121 (4%) Query: 43 TEATRAQSASTVRTKQQQAQRYDGQRTRAEVDAAKIVADINREMARLLADQQQLDKALER 102 EA ++ S++ + + RY E++ + + + +++++ L Sbjct: 132 AEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLI 191 Query: 103 ELKEAARKRQTEQQRLNQQVDRDIQSRNRQLNVLQSGLANQMARADDLEREVAKLQPLPE 162 + + + + Q Q+ LN + + + + + + + + + L Sbjct: 192 KEQFSTWQNQKYQKELN------LDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLH 245 Query: 163 Q 163 + Sbjct: 246 K 246
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 27.6 bits (61), Expect = 0.034 Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 18/92 (19%) Query: 3 ITAQQLLQILPNAGQKAGVFAPVLNTAMSKYQIVTPLRIAAFIAQVGHESGQLRYVREIW 62 I AQ+ Q L + AG+ A + A+S PL + IA + ++ + + Sbjct: 291 IIAQRAAQGLSTSAAAAGLIASAVTLAIS------PLSFLS-IADKFKRANKIEEYSQRF 343 Query: 63 GPTPQQLGYEGRKDLGNTVPGDGSKYRGRGLI 94 ++LGY+G L + ++ G I Sbjct: 344 ----KKLGYDGDSLL-------AAFHKETGAI 364
>adhesinb#Adhesin B signature. Length = 310 Score = 27.1 bits (60), Expect = 0.025 Identities = 10/39 (25%), Positives = 18/39 (46%) Query: 5 RTRITAVSILASLVLSGCATQPQETWTNQGPSKIVTENG 43 + R + +LA + L+ C++Q T T +V N Sbjct: 3 KCRFLVLLLLAFVGLAACSSQKSSTETGSSKLNVVATNS 41
>TYPE3OMOPROT#Type III secretion system outer membrane O protein family signature. Length = 303 Score = 28.0 bits (62), Expect = 0.029 Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 8/60 (13%) Query: 59 DWLATGTGQMASEQSNVEIVEQPSRMYRYPVVS--------WVAAGEWSEAVEPYAPGAA 110 +WL T +E P+R + +S W+ G+W E V P GAA Sbjct: 12 EWLLAQTATECQRHGREATLEYPTRQGMWVRLSDAEKRWSAWIKPGDWLEHVSPALAGAA 71
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 30.8 bits (69), Expect = 0.017 Identities = 54/251 (21%), Positives = 105/251 (41%), Gaps = 23/251 (9%) Query: 256 GEVEERLEAAKQHALSQTETIDALFRTIDEISEQARRKRLELDKLVKARKVAIRE-EIVL 314 E+E+ LE A + + + I L + + + L R+ R+ + Sbjct: 263 AELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASR 322 Query: 315 KAKAALRDHLDKINTSFG-GKVRLPEIPADFAGAIKGKKNIASLRDAADSELARAKIEAS 373 +AK L K+ + + D + + KK ++E + + E + Sbjct: 323 EAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKK-------QLEAEHQKLE-EQN 374 Query: 374 QIGDGIRANLESLRSLAVDHAFLFNDAQQIVLKNNDDLVALIKVRINEHKQAEEAKELAQ 433 +I + R +L R L +A++ V K ++ + + +K+ EE+K+L + Sbjct: 375 KISEASRQSLR--RDLDAS-----REAKKQVEKALEEANSKLAALEKLNKELEESKKLTE 427 Query: 434 RERIRAEESAKLAAAAEA--EQVAEAEKATANAPAPQAAEASKPVEQPAPRMSAVTPSAK 491 +E +AE AKL A A+A E++A+ + A A +A+++ P +P + AV + Sbjct: 428 KE--KAELQAKLEAEAKALKEKLAKQAEELAKLRAGKASDSQTPDAKPGNK--AVPGKGQ 483 Query: 492 VPPKPTKLEAN 502 P TK N Sbjct: 484 APQAGTKPNQN 494
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 36.0 bits (83), Expect = 1e-05 Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 3/54 (5%) Query: 69 EEDLKLLER---IKAMRDLGVSHFQAEKQTGINRTTIRRIVQKYGMDYPSSSRA 119 + L +E + A+ + +A G+NR T+R+ +++ G+ SSR+ Sbjct: 430 DRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGVSVYRSSRS 483
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 329 bits (846), Expect = e-111 Identities = 124/379 (32%), Positives = 181/379 (47%), Gaps = 36/379 (9%) Query: 98 FDFHTLPFDAGRLHASLDRALTAGHPNVQGAPSQFSAEPELLGDSRPVRELRRLLSKLAP 157 +D+ PFD L + RAL L+G S ++E+ R+L++L Sbjct: 99 YDYLPKPFDLTELIGIIGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQ 158 Query: 158 TDSPVLIRGERGTGKELIARSLHTQSLRRDKPFIVVDCATPDGQSIHAVLFGHEDGEFDD 217 TD ++I GE GTGKEL+AR+LH RR+ PF+ ++ A I + LFGHE G F Sbjct: 159 TDLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTG 218 Query: 218 AQERRVGLLEAADGGTLLLDEVGELPLDTQASLLRFLEDRQIERADGGEPIAVDVRVLAA 277 AQ R G E A+GGTL LDE+G++P+D Q LLR L+ + G PI DVR++AA Sbjct: 219 AQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAA 278 Query: 278 TREDLETAVRKKRFRDDLYYQLNVLQVGVAPLRERHGDLALLANHFAHLYSQETGRRARS 337 T +DL+ ++ + FR+DLYY+LNV+ + + PLR+R D+ L HF +E G + Sbjct: 279 TNKDLKQSINQGLFREDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKE-GLDVKR 337 Query: 338 FSQDALVALGKHDWPGNVRELAGRVRRGLVLAEGRQIEAANLGLLGE------------- 384 F Q+AL + H WPGNVREL VRR L I + Sbjct: 338 FDQEALELMKAHPWPGNVRELENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAA 397 Query: 385 ----------------------EDSIGSMGTLEDYKSRAERQALCDVLTRHSDNLSVAAR 422 D++ G + + E + LT N AA Sbjct: 398 RSGSLSISQAVEENMRQYFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAAD 457 Query: 423 VLGISRPTFYRLLHKHQIR 441 +LG++R T + + + + Sbjct: 458 LLGLNRNTLRKKIRELGVS 476
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 37.5 bits (87), Expect = 6e-05 Identities = 56/300 (18%), Positives = 94/300 (31%), Gaps = 48/300 (16%) Query: 41 VLIEGPRGMAKSTLARGLADV--LASGQFVTLPLGATEERLVGTLDLDAALSE------- 91 ++I G G K +AR L D +G FV + + A L+ SE Sbjct: 163 LMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIE--------SELFGHEKG 214 Query: 92 ---GRARFSPGVLAKADGGVLYVDEVNLLADHLVDLLLDVAASGVNLVERDGISHRHAAR 148 G S G +A+GG L++DE+ + LL V G G + Sbjct: 215 AFTGAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGE--YTTVGGRTPIRSD 272 Query: 149 FVLIGTMNP------EEGELRPQLLDRFGLNVALSGHTLPAERSQIIRRRLDFDSDPQGF 202 ++ N +G R L R LNV LP R R D + F Sbjct: 273 VRIVAATNKDLKQSINQGLFREDLYYR--LNV--VPLRLPPLRD----RAEDIPDLVRHF 324 Query: 203 CQHWQTQQDALKQRCEQARQLLSGI-------ELDDQSLAMITERCFAAGVDGMRADLVW 255 Q + + +K+ ++A +L+ EL++ + R A + + Sbjct: 325 VQQAEKEGLDVKRFDQEALELMKAHPWPGNVRELEN-----LVRRLTALYPQDVITREII 379 Query: 256 LRAARAHAAWRGAGHIEEQDIEAVAEFALRHRRREPLPPPQNSEAPPPPPGSSSKQAEPE 315 R+ + A+ R+ ++ P + E Sbjct: 380 ENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFGDALPPSGLYDRVLAEMEYP 439
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 84.9 bits (210), Expect = 3e-21 Identities = 37/151 (24%), Positives = 68/151 (45%), Gaps = 3/151 (1%) Query: 1 MSGKRILIVEDDADSASILEAYLRRDGFNVGLAENGQRGIDMHRQWKPDLILLDVMLPLV 60 M+G IL+ +DDA ++L L R G++V + N DL++ DV++P Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 61 SGTDVLSAVR-RCSDTPVIMVTAMGDEPEKLGALRYGADDYVVKPYNPREVVARVHAVL- 118 + D+L ++ D PV++++A + A GA DY+ KP++ E++ + L Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 119 -RRSLQSGNNERHLRYQNLLVELDAVTAIIE 148 + S + L+ A+ I Sbjct: 121 EPKRRPSKLEDDSQDGMPLVGRSAAMQEIYR 151
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 120 bits (302), Expect = 5e-29 Identities = 95/316 (30%), Positives = 130/316 (41%), Gaps = 63/316 (19%) Query: 807 GKGDDLLIGSSSRDMLLGGEGADTLAGGNGDD-FLGGDEIGGIPNADWSFTTDLQTNGLM 865 G GDD + S+ + G+G D + D +L D +++ T L + + Sbjct: 617 GDGDDKVFLSAGSANIYAGKGHDVVYYDKTDTGYLTIDGTKATEAGNYTVTRVLGGDVKV 676 Query: 866 LLKTFK-----------------------AGLNDDIEDGGDDV--MYGGAGNDMLWGSFG 900 L + K G N D V + G D +GS Sbjct: 677 LQEVVKEQEVSVGKRTEKTQYRSYEFTHINGKNLTETDNLYSVEELIGTTRADKFFGSKF 736 Query: 901 NDYLSGDSGNDILDGNDGNDTLFGGTGDDFLAGDSRDASGNLGKGADYLDGGDGNDQLIG 960 D G G+D+++GNDGND L+G G+D L+G G G D L GGDGND+LIG Sbjct: 737 TDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSG---------GNGDDQLYGGDGNDKLIG 787 Query: 961 SALNDVLIGGDGNDTLWGDNFFGADNLPGQDFLDGGDGSDYLMGGQDNDTLYGGTGEDFL 1020 A N+ L GGDG+D + L GG+ ND LYG G D L Sbjct: 788 VAGNNYLNGGDGDDEF--------------QVQGNSLAKNVLFGGKGNDKLYGSEGADLL 833 Query: 1021 FGDDPSVPKAQQGNDLLYGGEGND--EIQGMGGNDSLY-GGSENDTLL---GDGRDVAAE 1074 G +G+DLL GG GND G+ + G + D L D RDVA + Sbjct: 834 DGG--------EGDDLLKGGYGNDIYRYLSGYGHHIIDDDGGKEDKLSLADIDFRDVAFK 885 Query: 1075 SHGDDLIFGEAGNDSL 1090 G+DLI + + L Sbjct: 886 REGNDLIMYKGEGNVL 901 Score = 116 bits (292), Expect = 7e-28 Identities = 84/265 (31%), Positives = 123/265 (46%), Gaps = 29/265 (10%) Query: 951 GGDGNDQLIGSALNDVLIGGDGNDTL-WGDNFFGADNLPGQDFLD----------GGDGS 999 GDG+D++ SA + + G G+D + + G + G + GGD Sbjct: 616 LGDGDDKVFLSAGSANIYAGKGHDVVYYDKTDTGYLTIDGTKATEAGNYTVTRVLGGDVK 675 Query: 1000 DYLMGGQDNDTLYGGTGEDFLFGD---DPSVPKAQQGNDLLYGGEGNDEIQGMGGNDSLY 1056 ++ + G E + K D LY E E+ G D + Sbjct: 676 VLQEVVKEQEVSVGKRTEKTQYRSYEFTHINGKNLTETDNLYSVE---ELIGTTRADKFF 732 Query: 1057 GGSENDTLLG-DGRDVAAESHGDDLIFGEAGNDSLWGGGGSDSLYGGEGADFLEGDFPGL 1115 G D G DG D+ + G+D ++G+ GND+L GG G D LYGG+G D L G Sbjct: 733 GSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLIGV---- 788 Query: 1116 TTLYEGNDYLDGGNGEDTLQGAGG---DDTLFGGNDNDVLFGGMGDNVLEGGQGNDFISA 1172 GN+YL+GG+G+D Q G + LFGG ND L+G G ++L+GG+G+D + Sbjct: 789 ----AGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKG 844 Query: 1173 STGNDVYLFNSGDGADTIEDSGGNN 1197 GND+Y + SG G I+D GG Sbjct: 845 GYGNDIYRYLSGYGHHIIDDDGGKE 869 Score = 103 bits (259), Expect = 5e-24 Identities = 71/188 (37%), Positives = 94/188 (50%), Gaps = 26/188 (13%) Query: 883 DDVMYGGAGNDMLWGSFGNDYLSGDSGNDILDGNDGNDTLFGGTGDDFLAGDSRDASGNL 942 D+ +G G+D++ G+ GND L GD GND L G +G+D L+GG G+D L G Sbjct: 737 TDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLIG--------- 787 Query: 943 GKGADYLDGGDGNDQLI---GSALNDVLIGGDGNDTLWGDNFFGADNLPGQDFLDGGDGS 999 G +YL+GGDG+D+ S +VL GG GND L+G G D LDGG+G Sbjct: 788 VAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSE--------GADLLDGGEGD 839 Query: 1000 DYLMGGQDNDT-LYG-GTGEDFLFGDDPSVPKAQQGN----DLLYGGEGNDEIQGMGGND 1053 D L GG ND Y G G + D K + D+ + EGND I G + Sbjct: 840 DLLKGGYGNDIYRYLSGYGHHIIDDDGGKEDKLSLADIDFRDVAFKREGNDLIMYKGEGN 899 Query: 1054 SLYGGSEN 1061 L G +N Sbjct: 900 VLSIGHKN 907 Score = 98.9 bits (246), Expect = 2e-22 Identities = 52/155 (33%), Positives = 80/155 (51%), Gaps = 20/155 (12%) Query: 1433 NGADTITGTDADDQLDGKDGADLIYGGLGNDSIVGGQGDD------------TLYGGQGD 1480 G DT++G + DDQL G DG D + G GN+ + GG GDD L+GG+G+ Sbjct: 762 KGNDTLSGGNGDDQLYGGDGNDKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGN 821 Query: 1481 DHLYGGDGDDRLDGGSGNDVLEGGAGDNTFYFSRGMENDTFIADGASNNTLIFGSDYKLS 1540 D LYG +G D LDGG G+D+L+GG G++ + + G + DG + L +D Sbjct: 822 DKLYGSEGADLLDGGEGDDLLKGGYGNDIYRYLSGYGHHIIDDDGGKEDKLSL-ADIDFR 880 Query: 1541 DVLITQSGADLVLTSRHGP-------ESVTLKDYY 1568 DV + G DL++ G +T ++++ Sbjct: 881 DVAFKREGNDLIMYKGEGNVLSIGHKNGITFRNWF 915 Score = 91.6 bits (227), Expect = 3e-20 Identities = 68/257 (26%), Positives = 105/257 (40%), Gaps = 14/257 (5%) Query: 485 GIDRQSILFGSQADDNLLGSLARDHLYGESGNDYLYGGDGDDLLEGGEGNDHLNGGRDDD 544 G R FGS+ D G+ D + G GND LYG G+D L GG G+D L GG +D Sbjct: 724 GTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGND 783 Query: 545 RLIGMGGADTLTGGSGNDQLE-GGAGIDTYSFFKGDGLDHIIDGDGLIKINEAAVHGGKQ 603 +LIG+ G + L GG G+D+ + G + F G G D + +G ++ + Sbjct: 784 KLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLK 843 Query: 604 VGPGANTWLSETGDVRFSLSDEGGDRKSLSMFYGDGDRIVIDNFVMGTFGITLSDYIEPD 663 G G + + +G + D+GG LS+ D + F + + Sbjct: 844 GGYGNDIYRYLSGYGHHIIDDDGGKEDKLSLADIDFRDVA---FKREGNDLIMYKGEGNV 900 Query: 664 RSLGNLN--TIEGDLKPEDQDVTEADIQVGLDDWGNEIVMPGVADPDRENRLFDTPGNDN 721 S+G+ N T + E D++ +I+ D G I PD + + +N Sbjct: 901 LSIGHKNGITFRNWFEKESGDISNHEIEQIFDKSGRII------TPDSLKKALEYQQRNN 954 Query: 722 LLG--LGGDDELTSRQG 736 G D QG Sbjct: 955 KASYVYGNDALAYGSQG 971 Score = 90.4 bits (224), Expect = 6e-20 Identities = 46/112 (41%), Positives = 59/112 (52%) Query: 1430 VSSNGADTITGTDADDQLDGKDGADLIYGGLGNDSIVGGQGDDTLYGGQGDDHLYGGDGD 1489 + + AD G+ D G DG DLI G GND + G +G+DTL GG GDD LYGGDG+ Sbjct: 723 IGTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGN 782 Query: 1490 DRLDGGSGNDVLEGGAGDNTFYFSRGMENDTFIADGASNNTLIFGSDYKLSD 1541 D+L G +GN+ L GG GD+ F + G N+ L L D Sbjct: 783 DKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLD 834 Score = 85.8 bits (212), Expect = 2e-18 Identities = 67/236 (28%), Positives = 94/236 (39%), Gaps = 64/236 (27%) Query: 797 GANFQDWLDAGKGDDLLIGSSSRDMLLGGEGADTLAGGNGDDFLGGDEIGGIPNADWSFT 856 G+ F D GDDL+ G+ D L G +G DTL+GGNGDD L Sbjct: 733 GSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQL---------------- 776 Query: 857 TDLQTNGLMLLKTFKAGLNDDIEDGGDDVMYGGAGNDMLWGSFGNDYLSGDSGNDIL--- 913 YGG GND L G GN+YL+G G+D Sbjct: 777 ------------------------------YGGDGNDKLIGVAGNNYLNGGDGDDEFQVQ 806 Query: 914 DGNDGNDTLFGGTGDDFLAGDSRDASGNLGKGADYLDGGDGNDQLIGSALNDVLI--GGD 971 + + LFGG G+D L G GAD LDGG+G+D L G ND+ G Sbjct: 807 GNSLAKNVLFGGKGNDKLYGSE---------GADLLDGGEGDDLLKGGYGNDIYRYLSGY 857 Query: 972 GNDTLW----GDNFFGADNLPGQDFLDGGDGSDYLMGGQDNDTLYGGTGEDFLFGD 1023 G+ + ++ ++ +D +G+D +M + + L G F + Sbjct: 858 GHHIIDDDGGKEDKLSLADIDFRDVAFKREGNDLIMYKGEGNVLSIGHKNGITFRN 913 Score = 83.5 bits (206), Expect = 1e-17 Identities = 48/122 (39%), Positives = 64/122 (52%), Gaps = 16/122 (13%) Query: 718 GNDNLLGLGGDDELTSRQGGDDRLDGGSGDDTLTGGVGDDTLVGGVGADILISSDGDDEL 777 G+D + G G+D L +G +D L GG+GDD L GG G+D L+G G + L DGDDE Sbjct: 745 GDDLIEGNDGNDRLYGDKG-NDTLSGGNGDDQLYGGDGNDKLIGVAGNNYLNGGDGDDEF 803 Query: 778 YAEVETTLDDFIMSTSPKNGANFQDWLDAGKGDDLLIGSSSRDMLLGGEGADTLAGGNGD 837 + + ++ L GKG+D L GS D+L GGEG D L GG G+ Sbjct: 804 QVQ---------------GNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKGGYGN 848 Query: 838 DF 839 D Sbjct: 849 DI 850 Score = 80.0 bits (197), Expect = 1e-16 Identities = 46/127 (36%), Positives = 65/127 (51%), Gaps = 13/127 (10%) Query: 2357 DDIFGFNG----SDTLLGRGGDDRLSGGNGNDLLSGGLGNDRLIGGRGDDVYVFAKGDGQ 2412 DD F G + L G G+D+L G G DLL GG G+D L GG G+D+Y + G G Sbjct: 800 DDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKGGYGNDIYRYLSGYGH 859 Query: 2413 DVIDNAGGGKDILRLVGINGADISGGLVKDANNLIIN-------VHGSSDSITLENWFGG 2465 +ID+ GG +D L L I+ D++ ++ N+LI+ G + IT NWF Sbjct: 860 HIIDDDGGKEDKLSLADIDFRDVA--FKREGNDLIMYKGEGNVLSIGHKNGITFRNWFEK 917 Query: 2466 DGNVIEN 2472 + I N Sbjct: 918 ESGDISN 924 Score = 75.0 bits (184), Expect = 3e-15 Identities = 70/307 (22%), Positives = 124/307 (40%), Gaps = 92/307 (29%) Query: 2357 DDIFGFNGSDTLLGRGGDDRLSGGNGNDLLSGGLGNDRLIGGRGDDVYVFAKGDGQDVID 2416 +++ G +D G D G +G+DL+ G GNDRL G +G+D + G+G D + Sbjct: 720 EELIGTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDT--LSGGNGDDQLY 777 Query: 2417 NAGGGKDILRLVGINGADISGGLVKDANNLIINVHGSSDSITLENWFGGDGNVIENIIFD 2476 G G D +L+G+ G NN + GGDG+ Sbjct: 778 -GGDGND--KLIGVAG-----------NNYLN---------------GGDGD-------- 800 Query: 2477 DGAVSSAAIASAYGIDIFSGEVPDVYAELPEERDYSNIVLAKQSNTYMRGTQSSDFIEGA 2536 D F ++ N++ + N + G++ +D ++G Sbjct: 801 ---------------DEF---------QVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGG 836 Query: 2537 SGNDVLDGSGGDDYLIGGRGNDMYLNIFAGDTGKDIINNYSGTPSDSDSLMLGVADVRTV 2596 G+D+L G G GND+Y + G II++ G D L L D R V Sbjct: 837 EGDDLLKG---------GYGNDIYR--YLSGYGHHIIDDDGG---KEDKLSLADIDFRDV 882 Query: 2597 WFAKNNADLIISH-------LGTDNSVTIADWYL-----GTDYKLDQVT--NGRYSLSAE 2642 F + DLI+ +G N +T +W+ ++++++Q+ +GR ++ + Sbjct: 883 AFKREGNDLIMYKGEGNVLSIGHKNGITFRNWFEKESGDISNHEIEQIFDKSGRI-ITPD 941 Query: 2643 GVEDMVE 2649 ++ +E Sbjct: 942 SLKKALE 948 Score = 72.3 bits (177), Expect = 2e-14 Identities = 83/371 (22%), Positives = 134/371 (36%), Gaps = 59/371 (15%) Query: 2212 GSDAPEDLYGSTGIDEVYGGGGSDRYFFSSGEYLAV-----HEVSGSNDTVVFDRDIDIN 2266 D + ++ S G +Y G G D ++ + + N TV D+ Sbjct: 616 LGDGDDKVFLSAGSANIYAGKGHDVVYYDKTDTGYLTIDGTKATEAGNYTVTRVLGGDVK 675 Query: 2267 LIASSVKKINNDLLFDFNAVSAGRVT-------VKNFFLGGEFLVEKFMTQAGDVVPAQK 2319 ++ VK+ VS G+ T + + G+ L E + + + Sbjct: 676 VLQEVVKE---------QEVSVGKRTEKTQYRSYEFTHINGKNLTETDNLYSVEELIGTT 726 Query: 2320 IFDMFNIAMPLMSSPAYDSRINDL---PDTDSVINGSDVRDDIFGFNGSDTLLGRGGDDR 2376 D F + S+ D+ D D +I G+D D ++G G+DTL G GDD+ Sbjct: 727 RADKF-----------FGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQ 775 Query: 2377 LSGGNGNDLLSGGLGNDRLIGGRGDDVYVFAKGDGQDVIDNAGGGKDIL----------- 2425 L GG+GND L G GN+ L GG GDD + + G G D L Sbjct: 776 LYGGDGNDKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDG 835 Query: 2426 -----RLVGINGADISGGLVKDANNLIINVHGSSDSITLEN------WFGGDGNVIENII 2474 L G G DI L +++I + G D ++L + F +GN + Sbjct: 836 GEGDDLLKGGYGNDIYRYLSGYGHHIIDDDGGKEDKLSLADIDFRDVAFKREGNDLIMYK 895 Query: 2475 FDDGAVSSAAIASAYGIDIFSGEVPDVYAELPEERDYSN--IVLAKQSNTYMRGTQSSDF 2532 + +S + F E D+ E+ + I+ + Q ++ Sbjct: 896 GEGNVLSIGHKNGITFRNWFEKESGDISNHEIEQIFDKSGRIITPDSLKKALEYQQRNNK 955 Query: 2533 IEGASGNDVLD 2543 GND L Sbjct: 956 ASYVYGNDALA 966 Score = 71.5 bits (175), Expect = 4e-14 Identities = 65/247 (26%), Positives = 84/247 (34%), Gaps = 87/247 (35%) Query: 738 DDRLDGGSGDDTLTGGVGDDTLVGGVGADILISSDGDDELYAEVETTLDDFIMSTSPKNG 797 D G GDD + G G+D L G G+D Sbjct: 737 TDIFHGADGDDLIEGNDGNDRLYGD---------KGNDT--------------------- 766 Query: 798 ANFQDWLDAGKGDDLLIGSSSRDMLLGGEGADTLAGGNGDDFLGGDEIGGIPNADWSFTT 857 L G GDD L G D L+G G + L GG+GDD Sbjct: 767 ------LSGGNGDDQLYGGDGNDKLIGVAGNNYLNGGDGDDEF----------------- 803 Query: 858 DLQTNGLMLLKTFKAGLNDDIEDGGDDVMYGGAGNDMLWGSFGNDYLSGDSGNDILDGND 917 +Q N L +V++GG GND L+GS G D L G G+D+L G Sbjct: 804 QVQGNSL-----------------AKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKGGY 846 Query: 918 GNDTLFGGTGDDFLAGDSRDASGNLGKGADYLDGGD-----------GNDQLIGSALNDV 966 GND +L+G + G D L D GND ++ +V Sbjct: 847 GNDIYR------YLSGYGHHIIDDDGGKEDKLSLADIDFRDVAFKREGNDLIMYKGEGNV 900 Query: 967 LIGGDGN 973 L G N Sbjct: 901 LSIGHKN 907 Score = 56.9 bits (137), Expect = 1e-09 Identities = 34/116 (29%), Positives = 50/116 (43%), Gaps = 12/116 (10%) Query: 1783 HKIVYGDNVSGRVDVEHGNIF-YAGSGDDLLVAYALYAYHD-----------DLWYGGTM 1830 + +YGD + + +G+ Y G G+D L+ A Y + + Sbjct: 755 NDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNV 814 Query: 1831 MSGGDGNDTLVGHHGDDVLIGGGGNNVFFGGNGKDTYVIDGSAGTDIISDTPEPDD 1886 + GG GND L G G D+L GG G+++ GG G D Y G II D +D Sbjct: 815 LFGGKGNDKLYGSEGADLLDGGEGDDLLKGGYGNDIYRYLSGYGHHIIDDDGGKED 870 Score = 56.1 bits (135), Expect = 2e-09 Identities = 50/194 (25%), Positives = 69/194 (35%), Gaps = 52/194 (26%) Query: 1136 GAGGDDTLFGGNDNDVLFGGMGDNVLEGGQGNDFISASTGNDVYLFNSGDGADTIEDSGG 1195 G D FG D+ G GD+++EG GND + GND + G+G D + G Sbjct: 724 GTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDT--LSGGNGDDQLYGGDG 781 Query: 1196 NNKIFFGGKFSVDSLEVRISTPSLGQQYLHVGDSLGSYILLANMPAWSTSSFSFVDGATL 1255 N+K+ G YL+ GD + + N A Sbjct: 782 NDKLIGVA----------------GNNYLNGGDGDDEFQVQGNSLA-------------- 811 Query: 1256 SYAELIKLSENSLKYTGFEKSELVYGTMLADVINGEGGDDSLNGQGGDDLLDGGEGADTY 1315 +++G D + G G D L+G GDDLL GG G D Y Sbjct: 812 --------------------KNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKGGYGNDIY 851 Query: 1316 IVNANDGDDIISDS 1329 + G II D Sbjct: 852 RYLSGYGHHIIDDD 865 Score = 54.6 bits (131), Expect = 6e-09 Identities = 71/313 (22%), Positives = 113/313 (36%), Gaps = 35/313 (11%) Query: 538 NGGRDDDRLIGMGGA--DTLTGGSGNDQLEGGAGIDTYSFFKGDGLDHIIDGDGLIKINE 595 N + R+ G D + +G+ + G G D + K D IDG + Sbjct: 604 NNQYREIRIESHLGDGDDKVFLSAGSANIYAGKGHDVVYYDKTDTGYLTIDGTKATEAGN 663 Query: 596 AAVHGGKQVGPGANTW---LSETGDVRFSLSDEGGDRKSLSMFYGDGDRIVIDNF--VMG 650 V + +G + E +++ R + DN V Sbjct: 664 YTVT--RVLGGDVKVLQEVVKEQEVSVGKRTEKTQYRSYEFTHINGKNLTETDNLYSVEE 721 Query: 651 TFGITLSDYIEPDRSLGNLNTIEGDLKPEDQDVTEADIQVGLDDWGNEIVMPGVADPDRE 710 G T +D + + +GD E D D G D GN+ + G D Sbjct: 722 LIGTTRADKFFGSKFTDIFHGADGDDLIEGNDGN--DRLYG--DKGNDTLSGGNGD---- 773 Query: 711 NRLFDTPGNDNLLGLGGDDELTSRQGGD-----------DRLDGGSGDDTLTGGVGDDTL 759 ++L+ GND L+G+ G++ L G D + L GG G+D L G G D L Sbjct: 774 DQLYGGDGNDKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLL 833 Query: 760 VGGVGADILISSDGDDELYAEVETTLDDFIMSTSPKN------GANFQDWLDAGKGDDLL 813 GG G D+L G+D +Y + I K +F+D +G+DL+ Sbjct: 834 DGGEGDDLLKGGYGND-IYRYLSGYGHHIIDDDGGKEDKLSLADIDFRDVAFKREGNDLI 892 Query: 814 IGSSSRDMLLGGE 826 + ++L G Sbjct: 893 MYKGEGNVLSIGH 905 Score = 54.2 bits (130), Expect = 8e-09 Identities = 38/118 (32%), Positives = 54/118 (45%), Gaps = 17/118 (14%) Query: 1801 NIFYAGSGDDLLVAYALYAYHDDLWYGGT---MMSGGDGNDTLVGHHGDDVLIGGGGNNV 1857 +IF+ GDDL+ +D YG +SGG+G+D L G G+D LIG GNN Sbjct: 738 DIFHGADGDDLIEGN----DGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLIGVAGNNY 793 Query: 1858 FFGGNGKDTY----------VIDGSAGTDIISDTPEPDDHDSWTADNLHIWTFGYETY 1905 GG+G D + V+ G G D + + D D D+L +G + Y Sbjct: 794 LNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKGGYGNDIY 851 Score = 50.3 bits (120), Expect = 1e-07 Identities = 31/147 (21%), Positives = 59/147 (40%), Gaps = 15/147 (10%) Query: 2191 IAELPVPNAMLGGSAGNDIFFGSDAPEDLYGSTGIDEVYGGGGSDRYFFSSGE-YLAVHE 2249 + + +L G GND +GS+ + L G G D + GG G+D Y + SG + + + Sbjct: 805 VQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKGGYGNDIYRYLSGYGHHIIDD 864 Query: 2250 VSGSNDTVVFDRDIDINLIASSVKKINNDLLFDFNAVSA------GRVTVKNFFL----- 2298 G D + DI+ + K+ NDL+ + +T +N+F Sbjct: 865 DGGKEDKLSLA---DIDFRDVAFKREGNDLIMYKGEGNVLSIGHKNGITFRNWFEKESGD 921 Query: 2299 GGEFLVEKFMTQAGDVVPAQKIFDMFN 2325 +E+ ++G ++ + Sbjct: 922 ISNHEIEQIFDKSGRIITPDSLKKALE 948 Score = 45.7 bits (108), Expect = 3e-06 Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 9/97 (9%) Query: 2039 FMGGLGNDTVTTNKYD--VYGFDGDDYLETVANKDWFGVGPGLYGGKGNDTLVVNSVGST 2096 F G G+D + N + +YG G+D L D LYGG GND L+ + + Sbjct: 740 FHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQ------LYGGDGNDKLIGVAGNNY 793 Query: 2097 VEGGEGDDVIVLSGAGMV-NITGAVEGHDNILFRNGI 2132 + GG+GDD + G + N+ +G+D + G Sbjct: 794 LNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGA 830 Score = 45.0 bits (106), Expect = 4e-06 Identities = 45/192 (23%), Positives = 73/192 (38%), Gaps = 28/192 (14%) Query: 2041 GGLGNDTVTTNKYDVY--GFDGDDYLETVANKDWFGVGPGLYGGKGNDTLVVNSVGSTVE 2098 GG GND + + Y G DGDD + N V L+GGKGND L + ++ Sbjct: 778 GGDGNDKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNV---LFGGKGNDKLYGSEGADLLD 834 Query: 2099 GGEGDDVI----------VLSGAGMVNITGAVEGHDNILFRNGITAERLSFHKFESSLAI 2148 GGEGDD++ LSG G I D + + I ++F + + L + Sbjct: 835 GGEGDDLLKGGYGNDIYRYLSGYGHHIIDDDGGKEDKLSLAD-IDFRDVAFKREGNDLIM 893 Query: 2149 ------LVDSDFNKVVLVENYF--AASTLGDYTVRT---ADGAIYNKEDVGAMIAELPVP 2197 ++ + N+F + + ++ + G I + + + E Sbjct: 894 YKGEGNVLSIGHKNGITFRNWFEKESGDISNHEIEQIFDKSGRIITPDSLKKAL-EYQQR 952 Query: 2198 NAMLGGSAGNDI 2209 N GND Sbjct: 953 NNKASYVYGNDA 964 Score = 45.0 bits (106), Expect = 5e-06 Identities = 28/63 (44%), Positives = 33/63 (52%) Query: 473 GNTTYNTLYVNEGIDRQSILFGSQADDNLLGSLARDHLYGESGNDYLYGGDGDDLLEGGE 532 G N L +G D + S A + L G D LYG G D L GG+GDDLL+GG Sbjct: 787 GVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKGGY 846 Query: 533 GND 535 GND Sbjct: 847 GND 849 Score = 44.6 bits (105), Expect = 7e-06 Identities = 47/196 (23%), Positives = 78/196 (39%), Gaps = 20/196 (10%) Query: 1145 GGNDNDVLFGGMGDNVLEGGQGNDFISASTGNDVYLFNSGDGADTIEDSGGNNKIFFGGK 1204 G+ +D +F G + G+G+D + + YL + DG E GG Sbjct: 616 LGDGDDKVFLSAGSANIYAGKGHDVVYYDKTDTGYL--TIDGTKATEAGNYTVTRVLGGD 673 Query: 1205 FSVDSLEVRISTPSLGQ-----QYLHVGDSLGSYILLANMPAWSTSSFSFVDGAT-LSYA 1258 V V+ S+G+ QY + + T + V+ + A Sbjct: 674 VKVLQEVVKEQEVSVGKRTEKTQYRSYEFTH-----INGKNLTETDNLYSVEELIGTTRA 728 Query: 1259 ELIKLSENSLKYTGFEKSELVYGTMLADVINGEGGDDSLNGQGGDDLLDGGEGADTYI-- 1316 + S+ + + G + +L+ G D + G+ G+D+L+G GDD L GG+G D I Sbjct: 729 DKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLIGV 788 Query: 1317 -----VNANDGDDIIS 1327 +N DGDD Sbjct: 789 AGNNYLNGGDGDDEFQ 804 Score = 40.7 bits (95), Expect = 9e-05 Identities = 30/111 (27%), Positives = 43/111 (38%), Gaps = 9/111 (8%) Query: 1431 SSNGADTITGTDADDQLDGKDGADLIYGGLGNDSIVGGQGDDTLYGGQGDDHLYGGDGDD 1490 +S + + G +D+L G +GADL+ GG G+D + GG G+D G H Sbjct: 808 NSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKGGYGNDIYRYLSGYGH------HI 861 Query: 1491 RLDGGSGNDVLE-GGAGDNTFYFSRGMENDTFIADGASNNTLIFGSDYKLS 1540 D G D L F R E + I N L G ++ Sbjct: 862 IDDDGGKEDKLSLADIDFRDVAFKR--EGNDLIMYKGEGNVLSIGHKNGIT 910 Score = 38.4 bits (89), Expect = 5e-04 Identities = 36/180 (20%), Positives = 71/180 (39%), Gaps = 23/180 (12%) Query: 2081 GGKGNDTLVVNSVGSTVEGGEGDDVIVLS---------------GAGMVNITGAVEGHDN 2125 G G+D + +++ + + G+G DV+ AG +T + G Sbjct: 616 LGDGDDKVFLSAGSANIYAGKGHDVVYYDKTDTGYLTIDGTKATEAGNYTVTRVLGGDVK 675 Query: 2126 ILFRNGITAERLSFHKFESSLAILVDSDFNKVVLVENYFAASTLGDYTVRTADGAIYNKE 2185 +L + + + +S K +F + +N L Y+V G + Sbjct: 676 VL-QEVVKEQEVSVGKRTEKTQYR-SYEFTHIN-GKNLTETDNL--YSVEELIGTTRADK 730 Query: 2186 DVGAMIAEL---PVPNAMLGGSAGNDIFFGSDAPEDLYGSTGIDEVYGGGGSDRYFFSSG 2242 G+ ++ + ++ G+ GND +G + L G G D++YGG G+D+ +G Sbjct: 731 FFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLIGVAG 790 Score = 34.6 bits (79), Expect = 0.008 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%) Query: 1833 GGDGNDTLVGHHGDDVLIGGGGNNVFFGGNGKDTYVIDGSAGTD 1876 G D G GDD++ G GN+ +G G D + G G D Sbjct: 733 GSKFTDIFHGADGDDLIEGNDGNDRLYGDKGND--TLSGGNGDD 774
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 40.2 bits (94), Expect = 9e-06 Identities = 65/369 (17%), Positives = 120/369 (32%), Gaps = 47/369 (12%) Query: 43 IAPDIGLSSTAASLIVSLTQIGYALGLFFLVPLGDLLENRRLMLVTTVVAILSLLGAAFA 102 IA D + + + + + +++G L D L +RL+L ++ + F Sbjct: 40 IANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSV-IGFV 98 Query: 103 EQPNVFLLV--SLLVGFSSVSVQMLIPLA-AHLAPEESRGRVVGGIMGGLLLGILLARPI 159 LL+ + G + + L+ + A P+E+RG+ G I + +G + I Sbjct: 99 GHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAI 158 Query: 160 ASLVADHFGWRAVFGSAAVVMIGISVVLATTMP-KRLPDH-------------------R 199 ++A + W + + +I + ++ R+ H Sbjct: 159 GGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKEVRIKGHFDIKGIILMSVGIVFFMLFT 218 Query: 200 ASYGQLLFSLWTLLRTQPVLRQRA--------------------FYQACMFATFSLFWTA 239 SY + L V R +F T + F + Sbjct: 219 TSYSISFLIVSVLSFLIFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSM 278 Query: 240 VPLELSRNHGLSQTQI-AIFALIGAI-GAIAAPISGRLADAGYTRIASLGALLFGALSFL 297 VP + H LS +I ++ G + I I G L D + F ++SFL Sbjct: 279 VPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFL 338 Query: 298 PGLVHPAYSVIGLAITGV-VLDFCVQTSMVLGQRTVYALDAASRSRLNALYMTSIFIGGA 356 + + I V VL T V+ +L +L + F+ Sbjct: 339 TASFLLETTSWFMTIIIVFVLGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEG 398 Query: 357 IGSAVASPL 365 G A+ L Sbjct: 399 TGIAIVGGL 407
>PF06057#Type IV secretory pathway VirJ component Length = 243 Score = 34.4 bits (79), Expect = 3e-04 Identities = 41/143 (28%), Positives = 53/143 (37%), Gaps = 25/143 (17%) Query: 1 MLKFFAALLFAVTAMAQAQDTLH----TDLPLDYLAQTNVD--KPDQPLVIFIHGYGSNA 54 ++K + LL TA A A + T LP++ Q N PLVIF+ G G A Sbjct: 5 LIKILSVLLLCSTANAFADEFADNLGLTLLPVEPSTQVNAASSHTKPPLVIFLSGDGGWA 64 Query: 55 ADLFGLKEELPADYNYVSVQAPMELRADSYKWFTQKPGVADYDGVTEDLKSSGTRLAAFI 114 + L V L+ Y W + P K A I Sbjct: 65 TLDKAVGGILQQQG--WPVVGWSSLK---YYWKQKDP------------KDVTQDTLAII 107 Query: 115 GKATEKFHTQPGKVFLIGFSQGA 137 K +F TQ KV LIG+S GA Sbjct: 108 DKYQAEFGTQ--KVILIGYSFGA 128
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 232 bits (592), Expect = 2e-68 Identities = 119/526 (22%), Positives = 222/526 (42%), Gaps = 41/526 (7%) Query: 266 GMSVGVFGLQRASVGELMPELQKMFGPESGMPLAGMVRFLPIERTNSVVAISSQPEYLHE 325 + V L + +L P L+++ AG+ + E +N ++ ++ + + Sbjct: 126 EVVTRVVPLTNVAARDLAPLLRQL------NDNAGVGSVVHYEPSNVLL-MTGRAAVIKR 178 Query: 326 VGEWIHTIDEGGGNEPQMYVYDVRNMKATDLAKYLRQIYG---TGAIKDDSPAKVAPGLR 382 + + +D G + + A D+ K + ++ A+ A V R Sbjct: 179 LLTIVERVDNAGDRS--VVTVPLSWASAADVVKLVTELNKDTSKSALPGSMVANVVADER 236 Query: 383 TTTLSSLNSSGGSGVGGMSSSNGLGSNGGGMGNGGGFGNSQSMNNSQNSADSESEGDDQG 442 T N+ SG +S + + + + N++ ++ D Sbjct: 237 T------NAVLVSGEP--NSRQRIIAMIKQLDR-----QQATQGNTKVIYLKYAKASDLV 283 Query: 443 GGDSDSDSASQDGSGSSGASKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNP 502 + S Q ++ +LD + I A +N L+V P ++E I +LD Sbjct: 284 EVLTGISSTMQSEKQAAKPVAALDKNIIIKAHGQTNALIVTAAPDVMNDLERVIAQLDIR 343 Query: 503 PLQVQIETRILEVKLTGELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTG------- 555 QV +E I EV+ L++G+QW T + + GA Sbjct: 344 RPQVLVEAIIAEVQDADGLNLGIQWANKNAGMTQFTNSGLPISTAIAGANQYNKDGTVSS 403 Query: 556 --GAALASTDAFFYSFVSNNLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPI 613 +AL+S + F N + L AL ++ + +L+ PS+V ++N +A VG +P+ Sbjct: 404 SLASALSSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMEATFNVGQEVPV 463 Query: 614 SQTSINTNTNTGTTLSSVEYVQTGVILDVVPRINPGGLVYMDIQQQVSD-ADSSGTTDAN 672 S T+ ++VE G+ L V P+IN G V ++I+Q+VS AD++ +T ++ Sbjct: 464 LTGS--QTTSGDNIFNTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSTSSD 521 Query: 673 GNPRISTRSVATQVAAQSGQTVLLGGLIKQDNAETVNAVPYLGRIPGLRWLFGNTSKSKD 732 +TR+V V SG+TV++GGL+ + ++T + VP LG IP + LF +TSK Sbjct: 522 LGATFNTRTVNNAVLVGSGETVVVGGLLDKSVSDTADKVPLLGDIPVIGALFRSTSKKVS 581 Query: 733 RTELIVLITPRVITSSSQARQVTDD----YRQQMQLLKPEVSRTSM 774 + L++ I P VI + RQ + + + + + +M Sbjct: 582 KRNLMLFIRPTVIRDRDEYRQASSGQYTAFNDAQSKQRGKENNDAM 627 Score = 98.1 bits (244), Expect = 3e-23 Identities = 59/282 (20%), Positives = 109/282 (38%), Gaps = 10/282 (3%) Query: 93 AAAPAARQAETGDIVFNFTNQPIQAVINSIMGDLLHENYSIAQGVKGDVSFSTSKPVNKQ 152 AA R A + +F IQ IN++ +L ++ I V+G ++ + +N++ Sbjct: 17 FAALLFRPAAAEEFSASFKGTDIQEFINTVSKNL-NKTVIIDPSVRGTITVRSYDMLNEE 75 Query: 153 QALSILETLLSWTDNAMIKQGNR--YVILPSNQAVAGKLVPEMRVAQPSAGMSARLFPLR 210 Q ++L A+I N V+ + A V + R+ PL Sbjct: 76 QYYQFFLSVLDVYGFAVINMNNGVLKVVRSKDAKTAAVPVASDAAPGIGDEVVTRVVPLT 135 Query: 211 YISATEMQKLLKPFARENAFLLV--DPARNVLSLAGTPEELANYQDTIDTFDVDWLKGMS 268 ++A ++ LL+ V NVL + G + + VD S Sbjct: 136 NVAARDLAPLLRQLNDNAGVGSVVHYEPSNVLLMTGRAAVIKRLLTIV--ERVDNAGDRS 193 Query: 269 VGVFGLQRASVGELMPELQKMFGPESG--MPLAGMVRFLPIERTNSVVAISSQPEYLHEV 326 V L AS +++ + ++ S +P + + + ERTN+V+ +S +P + Sbjct: 194 VVTVPLSWASAADVVKLVTELNKDTSKSALPGSMVANVVADERTNAVL-VSGEPNSRQRI 252 Query: 327 GEWIHTIDEGGGNEPQMYVYDVRNMKATDLAKYLRQIYGTGA 368 I +D + V ++ KA+DL + L I T Sbjct: 253 IAMIKQLDRQQATQGNTKVIYLKYAKASDLVEVLTGISSTMQ 294
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 86.0 bits (213), Expect = 1e-21 Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 1/135 (0%) Query: 2 RLLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVYQGASEPYDLIVLDLGLPGMPGLE 61 +L+ +D + L AL R GY V ++ A+ DL+V D+ +P + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 VLQQWRSKGLATPVLILTARGSWSERIEGLKAGADDYLTKPFHPEELQLRI-QALLRRSH 120 +L + + PVL+++A+ ++ I+ + GA DYL KPF EL I +AL Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 121 GLANQPTLESAGLNL 135 + G+ L Sbjct: 125 RPSKLEDDSQDGMPL 139
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 65.8 bits (160), Expect = 3e-15 Identities = 31/134 (23%), Positives = 53/134 (39%), Gaps = 3/134 (2%) Query: 4 SETVERILDAAEQLFAEKGFAETSLRLITSKASVNLAAVNYHFGSKKALIQAVFSRFLGP 63 ET + ILD A +LF+++G + TSL I A V A+ +HF K L ++ Sbjct: 10 QETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESN 69 Query: 64 FCISLDRELERRQAKPEHKPSLEELLEILVEQALVVQPRSGNDLSIFMRLLGLA-FSQSQ 122 + P L E+L ++E + + R IF + + + Q Sbjct: 70 IGELELEYQAKFPGDPL--SVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQ 127 Query: 123 GHLRRYLEDMYGKV 136 R + Y ++ Sbjct: 128 QAQRNLCLESYDRI 141
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 64.8 bits (158), Expect = 8e-16 Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 3/73 (4%) Query: 11 AIALSYDGQH--APTLSAKGDDQLAEAILAIAREYEVPIYENAELVK-LLARMELGDSIP 67 AI + Y P ++ K D + + IA E VPI + L + L + IP Sbjct: 268 AIGILYKRGETPLPLVTFKYTDAQVQTVRKIAEEEGVPILQRIPLARALYWDALVDHYIP 327 Query: 68 EPLYRTIAEIIAF 80 AE++ + Sbjct: 328 AEQIEATAEVLRW 340
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 40.5 bits (95), Expect = 6e-06 Identities = 40/215 (18%), Positives = 74/215 (34%), Gaps = 55/215 (25%) Query: 13 ALLDVSRMQHNIQRMQQRMNELGVRLRPHVKTSKCLPVIQAQIAAGASGVTVSTLKEAEH 72 A LD+ ++ N+ ++Q H ++ V++A A G + + A Sbjct: 7 ASLDLQALKQNLSIVRQAA--------TH---ARVWSVVKAN-AYGHGIERIWSAIGATD 54 Query: 73 CFAEGIDDVFYAVAIAPGKLEQALRLRRKGCRLSIL-------------------TDSVA 113 FA + LE+A+ LR +G + IL T V Sbjct: 55 GFA---------LLN----LEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVH 101 Query: 114 AARAIAVFGQAH-DERFDVWIEIDCDGHRSGLTVEDPSLVEVASTLVN-GGMQLRGVMTH 171 + + A D++++++ +R G + ++ V L + +M+H Sbjct: 102 SNWQLKALQNARLKAPLDIYLKVNSGMNRLG--FQPDRVLTVWQQLRAMANVGEMTLMSH 159 Query: 172 AGSSYDLDTPAALQALAEQ-------ERRLCVSAA 199 + D + A EQ R L SAA Sbjct: 160 FAEAEHPDGISGAMARIEQAAEGLECRRSLSNSAA 194
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 31.5 bits (71), Expect = 0.002 Identities = 9/49 (18%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Query: 48 FVAEHDGQLVG-VAFTCHQGDWSSIGLVIVRDDHQGKGIGRHLMRLCLD 95 F+ + +G + + ++ I + V D++ KG+G L+ ++ Sbjct: 68 FLYYLENNCIGRIKIRSNWNGYALIEDIAVAKDYRKKGVGTALLHKAIE 116
>PF06917#Periplasmic pectate lyase Length = 555 Score = 29.9 bits (67), Expect = 0.017 Identities = 15/36 (41%), Positives = 17/36 (47%) Query: 252 LMADGFTYKPRQPVDWMVCDIVEKPARNAALLETWL 287 L+ADGF QPV W D P N A + WL Sbjct: 41 LLADGFDVLTHQPVVWEFPDGHHTPISNFASQQNWL 76
>FLAGELLIN#Flagellin signature. Length = 507 Score = 30.4 bits (68), Expect = 0.018 Identities = 13/72 (18%), Positives = 33/72 (45%), Gaps = 3/72 (4%) Query: 424 TMDTGRRQAEEGVARVLEADQALVGISEAVANITDMTTQIATAT---EEQSAVAEEINRN 480 + R A +G++ + AL I+ + + +++ Q T + ++ +EI + Sbjct: 59 GLTQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQR 118 Query: 481 IATIASLADQTS 492 + I +++QT Sbjct: 119 LEEIDRVSNQTQ 130
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 31.2 bits (70), Expect = 0.002 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 2/27 (7%) Query: 123 LCISYTFTPYVQYGLV--DLYYELYRD 147 L ++Y TPY + LV D+ Y+++RD Sbjct: 13 LTVAYALTPYTEAALVRDDVDYQIFRD 39
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 266 bits (682), Expect = 8e-80 Identities = 159/505 (31%), Positives = 241/505 (47%), Gaps = 46/505 (9%) Query: 249 DDTSTLNITLQNGAQLNGDIVNGNRLAITSGSHWQMQGDNAVRSLSLQG-GRVSFAGEG- 306 L++ L + A+ G + L+I + + W M ++ V +L L G V F Sbjct: 408 TSIGPLDVALASQARWTGATRAVDSLSIDNAT-WVMTDNSNVGALRLASDGSVDFQQPAE 466 Query: 307 ---FHTLSLNELSGAGTFGLRVDLDNGVGDLIDVNGQASGQFGLRVRNTGVEVVSADMAP 363 F L++N L+G+G F + V D G+ D + V ASGQ L VRN+G E SA+ Sbjct: 467 AGRFKVLTVNTLAGSGLFRMNVFADLGLSDKLVVMQDASGQHRLWVRNSGSEPASAN-TL 525 Query: 364 LKVVHTEGGDAQFSL--LGGRVDLGAYSYLLEQQGN-DWFIVGKDKVISPSTQ------- 413 L V G A F+L G+VD+G Y Y L GN W +VG +P Sbjct: 526 LLVQTPLGSAATFTLANKDGKVDIGTYRYRLAANGNGQWSLVGAKAPPAPKPAPQPGPQP 585 Query: 414 -----------------------SALALYSA-----APAIWMSELSTLRSRMGEVRASGR 445 +A A + A +W +E + L R+GE+R + Sbjct: 586 PQPPQPQPEAPAPQPPAGRELSAAANAAVNTGGVGLASTLWYAESNALSKRLGELRLNPD 645 Query: 446 AGG-WMRAYGNRLNATTSDGVDYRQKQSGLSLGADAPVEVSNGQLVVGVLGGYSTSGIDL 504 AGG W R + R G + QK +G LGAD V V+ G+ +G L GY+ Sbjct: 646 AGGAWGRGFAQRQQLDNRAGRRFDQKVAGFELGADHAVAVAGGRWHLGGLAGYTRGDRGF 705 Query: 505 SRGTTGKVDSYYAGAYATWLSDDGYYVDGVLKLNRFRNKADVAMSDASKAKGDYTNNGIG 564 + G DS + G YAT+++D G+Y+D L+ +R N VA SD KG Y +G+G Sbjct: 706 TGDGGGHTDSVHVGGYATYIADSGFYLDATLRASRLENDFKVAGSDGYAVKGKYRTHGVG 765 Query: 565 GWVEFGRHIKLADDYFLEPFAQLSSVVVQGQELRLDNGMKAKNDQTQSVLGKVGTSLGRS 624 +E GR AD +FLEP A+L+ G R NG++ +++ SVLG++G +G+ Sbjct: 766 ASLEAGRRFTHADGWFLEPQAELAVFRAGGGAYRAANGLRVRDEGGSSVLGRLGLEVGKR 825 Query: 625 VALKDGGVLQPYVRVAIAQEFSRRNEVKANDVKFDNSLFGSRGELGAGVSVSLSERLKLH 684 + L G +QPY++ ++ QEF V N + L G+R ELG G++ +L L+ Sbjct: 826 IELAGGRQVQPYIKASVLQEFDGAGTVHTNGIAHRTELRGTRAELGLGMAAALGRGHSLY 885 Query: 685 ADFDYMKGRHIEQPWGANVGLRLAF 709 A ++Y KG + PW + G R ++ Sbjct: 886 ASYEYSKGPKLAMPWTFHAGYRYSW 910
>INTIMIN#Intimin signature. Length = 939 Score = 38.5 bits (89), Expect = 1e-04 Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 5/89 (5%) Query: 695 PALVLDTSPVTLAGKVYLLPGSPDLLPNFPADTTVQRQASGGQAPYQYTSSDPLVAKVDS 754 L +D + + G L + V +ASGG Y + S++P +A VD+ Sbjct: 752 TTLTIDDGNIEIVGTGV----KGKLPTVWLQYGQVNLKASGGNGKYTWRSANPAIASVDA 807 Query: 755 N-GLTSVRSKGTAIITATDALGASKQYTV 782 + G +++ KGT I+ + + YT+ Sbjct: 808 SSGQVTLKEKGTTTISVISSDNQTATYTI 836
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 315 bits (808), Expect = e-108 Identities = 94/351 (26%), Positives = 175/351 (49%), Gaps = 4/351 (1%) Query: 9 DKTEDPTEKKVKDSRADGQIARSKELTTLVVMLMGAGGLLMFGSDIALMMSELMRDNFTI 68 +KTE PT KK++D+R GQ+A+SKE+ + +++ + L+ S+LM Sbjct: 4 EKTEQPTPKKIRDARKKGQVAKSKEVVSTALIVALSAMLMGLSDYYFEHFSKLML---IP 60 Query: 69 SRETLMDQSYMGKALLSSG-MHALVVVLPFLIAMLVAALVGPIMLGGWLFATKSLMPKFS 127 + ++ + S ++ + + + P L + A+ ++ G+L + +++ P Sbjct: 61 AEQSYLPFSQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPDIK 120 Query: 128 RMNPAAGLKRMFSPHALVELLKSFGKFLITLAVALVVLNNERKDLVAIAHEPLEQAMIHS 187 ++NP G KR+FS +LVE LKS K ++ + +++ L+ + +E Sbjct: 121 KINPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITPLL 180 Query: 188 LVVVGWSSFWMACGLIFIAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSPEVKQRIRQ 247 ++ G + I+ AD F Y+ K+L M+K E++ E+K EGSPE+K + RQ Sbjct: 181 GQILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKRRQ 240 Query: 248 LQREMSQRRMMASVPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVALKIREIGA 307 +E+ R M +V + V++ NPTH A+ + Y + P++ K TD +R+I Sbjct: 241 FHQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKIAE 300 Query: 308 HNEILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQIRQFRAGQ 358 + IL+ LAR++Y+ +D IPA A A+VL ++ + + Sbjct: 301 EEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLERQNIEKQHS 351
>TYPE3IMRPROT#Type III secretion system inner membrane R protein family signature. Length = 261 Score = 137 bits (347), Expect = 1e-41 Identities = 97/256 (37%), Positives = 151/256 (58%), Gaps = 2/256 (0%) Query: 4 MLALTDTQISTWVASFMLPLFRIIALLMTMPIIGTTLVPRRVRMYLAVAITVVVAPALPA 63 ML +T Q +W+ + PL R++AL+ T PI+ VP+RV++ LA+ IT +AP+LPA Sbjct: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 Query: 64 MPPVQALDLSALLLIGEQIIIGAGMGLSLQLFFHIFVIAGQIISTQMGMGFASMVDPTNG 123 AL L +QI+IG +G ++Q F AG+II QMG+ FA+ VDP + Sbjct: 61 NDVPV-FSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 Query: 124 VSSATIGQFFTMLVTLLFLAMNGHLVVLEVLVESFTTMPVGSGLLVNNFWE-LANGLGWV 182 ++ + + ML LLFL NGHL ++ +LV++F T+P+G L +N + L + Sbjct: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 Query: 183 LASGLRLVLPAITALLIINIAFGVMTRAAPQLNIFSIGFPLTLVLGMVILWMTMGDMLNQ 242 +GL L LP IT LL +N+A G++ R APQL+IF IGFPLTL +G+ ++ M + Sbjct: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 Query: 243 YQPIATQALQALRDMV 258 + + ++ L D++ Sbjct: 240 CEHLFSEIFNLLADII 255
>TYPE3IMQPROT#Type III secretion system inner membrane Q protein family signature. Length = 86 Score = 49.4 bits (118), Expect = 1e-11 Identities = 23/74 (31%), Positives = 40/74 (54%) Query: 7 VDLFREALWLTTVLVAILVVPSLLCGLLVAMFQAATQINEQTLSFLPRLLVMLVTLIVIG 66 V +AL+L +L + + + GLLV +FQ TQ+ EQTL F +LL + + L ++ Sbjct: 5 VFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFLLS 64 Query: 67 PWLLKIFMEYMLSL 80 W ++ + Y + Sbjct: 65 GWYGEVLLSYGRQV 78
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 261 bits (668), Expect = 2e-90 Identities = 140/247 (56%), Positives = 182/247 (73%), Gaps = 4/247 (1%) Query: 1 MGALRFLILLLLVMVTPAALAADPLSIPAITLSNGADGQQEYSVSLQILLIMTALSFIPA 60 M L + +LL ++TP A A +P IT G Q +S+ +Q L+ +T+L+FIPA Sbjct: 1 MRRLLSVAPVLLWLITPLAFAQ----LPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPA 56 Query: 61 FVMLMTSFTRIIIVFSILRQALGLQQAPSNQILTGMALFLTMFIMAPVFDRVNQDALQPY 120 +++MTSFTRIIIVF +LR ALG AP NQ+L G+ALFLT FIM+PV D++ DA QP+ Sbjct: 57 ILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPF 116 Query: 121 LAEKLSAQDAVAKAQVPIKDFMLAQTRTSDLELFMRLSKRTDIPTPDAAPLTILVPAFVI 180 EK+S Q+A+ K P+++FML QTR +DL LF RL+ + P+A P+ IL+PA+V Sbjct: 117 SEEKISMQEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVT 176 Query: 181 SELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIV 240 SELKTAFQIGF IFIPFLIIDLV+ASVLMA+GMMM+ P I+LPFK+MLFVLVDGW L+V Sbjct: 177 SELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLV 236 Query: 241 GTLAGSF 247 G+LA SF Sbjct: 237 GSLAQSF 243
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 121 bits (304), Expect = 3e-38 Identities = 66/151 (43%), Positives = 95/151 (62%), Gaps = 16/151 (10%) Query: 1 MADENDMTSAEDQALADEWAAALGEAGDSQADIDALLAADAGNSGSRMAMEEFGSVPKST 60 M+D N+ + AL D WA AL E A S + ++ G Sbjct: 1 MSDMNNPSDENTGALDDLWADALNEQ-----------KATTTKSAADAVFQQLGG----- 44 Query: 61 GPVSLDGPNLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGT 120 G VS ++D+I+DIPV +++E+G T + I+ LL+L QGSV+ LD LAGEPLD+L+NG Sbjct: 45 GDVSGAMQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGY 104 Query: 121 LIAHGEVVVVNEKFGIRLTDVISPSERIKKL 151 LIA GEVVVV +K+G+R+TD+I+PSER+++L Sbjct: 105 LIAQGEVVVVADKYGVRITDIITPSERMRRL 135
>FLGMOTORFLIM#Flagellar motor switch protein FliM signature. Length = 344 Score = 252 bits (645), Expect = 2e-84 Identities = 93/323 (28%), Positives = 164/323 (50%), Gaps = 9/323 (2%) Query: 5 DLLSQDEIDALLHGVDDGMVQTDNNSEPG---SVKSYDLTSQDRIVRGRMPTLEMINERF 61 ++LSQDEID LL + G ++ + YD D+ + +M TL +++E F Sbjct: 3 EVLSQDEIDQLLTAISSGDASIEDARPISDTRKITLYDFRRPDKFSKEQMRTLSLMHETF 62 Query: 62 ARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFILDAK 121 AR T S+ LR V V V + + E++ S+ P++L + + PL+G A+ +D Sbjct: 63 ARLTTTSLSAQLRSMVHVHVASVDQLTYEEFIRSIPTPSTLAVITMDPLKGNAVLEVDPS 122 Query: 122 LVFKLVDNFFGGDGRHAKIEGREFTPTELRVVRMVLDQAFVDLKEAWQAIMEVNFEYINS 181 + F ++D FGG G+ AK++ R+ T E V+ V+ + +++E+W ++++ Sbjct: 123 ITFSIIDRLFGGTGQAAKVQ-RDLTDIENSVMEGVIVRILANVRESWTQVIDLRPRLGQI 181 Query: 182 EVNPAMANIVGPSEAVVISTFHIELDGGGGDLHVTMPYSMIEPIREMLDAGF--QSDLDD 239 E NP A IV PSE VV+ T ++ G ++ +PY IEPI L + F S Sbjct: 182 ETNPQFAQIVPPSEMVVLVTLETKVGEEEGMMNFCIPYITIEPIISKLSSQFWFSSVRRS 241 Query: 240 QDERWVNALKEDVLDVNVPLTTTIAQRQLPLRDILHMRPGDVIPVE---LSDSLVMRANG 296 +++ L++ + V++ + + +L +RDIL +R GD+I + + D V+ Sbjct: 242 STTQYMGVLRDKLSTVDMDVVAEVGSLRLSVRDILGLRVGDIIRLHDTHVGDPFVLSIGN 301 Query: 297 VPSFKVKLGSHKGKMALQVIEPI 319 F + G K+A Q++E I Sbjct: 302 RKKFLCQPGVVGKKIAAQILERI 324
>FLGHOOKFLIK#Flagellar hook-length control protein signature. Length = 375 Score = 48.3 bits (114), Expect = 3e-08 Identities = 51/178 (28%), Positives = 84/178 (47%), Gaps = 13/178 (7%) Query: 292 AALSQAAQPARAAAAP--AAPLMNQPLAMHQSGWTEGIVDRVMYLSSQNLKTADIKLEPA 349 AA S P + P AAP+++ PL H+ W + + + + Q ++A+++L P Sbjct: 209 AAASPLITPHQTQPLPTVAAPVLSAPLGSHE--WQQSLSQHISLFTRQGQQSAELRLHPQ 266 Query: 350 ELGRLDIRINMAPEQQTQVTFMSAHMGVRDALESQMSKLRESFVQQGLGNVDVNVSDQSQ 409 +LG + I + + + Q Q+ +S H VR ALE+ + LR + G+ N+S +S Sbjct: 267 DLGEVQISLKV-DDNQAQIQMVSPHQHVRAALEAALPVLRTQLAESGIQLGQSNISGESF 325 Query: 410 QQAQQQAQEQASRSQRSGRGGGMSSGDSSDEIAGVDAAIPVSQPAARVIGTSEIDYYA 467 QQ A +Q Q+S R D+ +PVS RV G S +D +A Sbjct: 326 SGQQQAASQQ----QQSQRTANHEPLAGEDDDT---LPVPVSL-QGRVTGNSGVDIFA 375
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 507 bits (1306), Expect = e-180 Identities = 183/494 (37%), Positives = 255/494 (51%), Gaps = 22/494 (4%) Query: 5 IKILLIDDDSQRRRDLAVILNFLGEENLSCSSQDWQQVVGSLASPREVLC-----VLVGS 59 IL+ DDD+ R L L+ G + + A+ + ++V Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRI---------TSNAATLWRWIAAGDGDLVVTD 54 Query: 60 VNAPG-SLQGLLKTIAAWDEFLPVLLMSENSSVELP-EDLRRRVLSALEMPPSYSKLLDS 117 V P + LL I LPVL+MS ++ + + L P ++L+ Sbjct: 55 VVMPDENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGI 114 Query: 118 LHRAQVYREMYDQARERGRHREPNLFRSLVGTSRAIQHVRQMMQQVADTDASVLILGESG 177 + RA + R + LVG S A+Q + +++ ++ TD +++I GESG Sbjct: 115 IGRALAEP----KRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESG 170 Query: 178 TGKEVVARNLHYHSKRRDAPFVPVNCGAIPAELLESELFGHEKGAFTGAITSRAGRFELA 237 TGKE+VAR LH + KRR+ PFV +N AIP +L+ESELFGHEKGAFTGA T GRFE A Sbjct: 171 TGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQA 230 Query: 238 NGGTLFLDEIGDMPLPMQVKLLRVLQERTFERVGSNKTQSIDVRIIAATHKNLETMIELG 297 GGTLFLDEIGDMP+ Q +LLRVLQ+ + VG DVRI+AAT+K+L+ I G Sbjct: 231 EGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQG 290 Query: 298 SFREDLYYRLNVFPIEMAPLRERVEDIPLLMNELISRMEHEKRGSIRFNSAAIMSLCRHA 357 FREDLYYRLNV P+ + PLR+R EDIP L+ + + E E RF+ A+ + H Sbjct: 291 LFREDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKEGLDVKRFDQEALELMKAHP 350 Query: 358 WPGNVRELANLVERMAIMHPYGVIGVAELPKKFRY-VDDEDEQMVDSMRSEIEERVAINS 416 WPGNVREL NLV R+ ++P VI + + R + D + + + A+ Sbjct: 351 WPGNVRELENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEE 410 Query: 417 NTPN-FASGAMLPPEGLDLKDYLGGLEQGLIQQALDDANGIVARAAERLRIRRTTLVEKM 475 N FAS P L +E LI AL G +AA+ L + R TL +K+ Sbjct: 411 NMRQYFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKI 470 Query: 476 RKYGMSRREGDEQA 489 R+ G+S A Sbjct: 471 RELGVSVYRSSRSA 484
>FLAGELLIN#Flagellin signature. Length = 507 Score = 115 bits (289), Expect = 2e-31 Identities = 89/272 (32%), Positives = 129/272 (47%), Gaps = 3/272 (1%) Query: 2 ALTVNTNVTSLSVQKNLSRASDALSTSMGRLSSGLKIMSSKDDAAGLNIATKINSQIKGQ 61 A +NTN SL Q NL+++ +LS+++ RLSSGL+I S+KDDAAG IA + S IKG Sbjct: 1 AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60 Query: 62 TMAIKNANDGMSIAQTAEGALQESTNILQRMRELAVQSRNDSNSATDRVALNKEFTQMSS 121 T A +NANDG+SIAQT EGAL E N LQR+REL+VQ+ N +NS +D ++ E Q Sbjct: 61 TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120 Query: 122 ELTRIANSTNLNGKNLIDGSASTMTFQVGSNSGASNQISLSLSASFDANTLGVGSAITIV 181 E+ R++N T NG ++ M QVG+N G + I L G Sbjct: 121 EIDRVSNQTQFNGVKVLSQDNQ-MKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKE 179 Query: 182 GSDSAAAETNFSASIAAIDSALQTINNTRSDLGAAQNRLSSTISNLQNINENASAALGRI 241 + + ++ D+ N R D+ + +T + + +A Sbjct: 180 ATVGDLKSSF--KNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLT 237 Query: 242 QDTDFAAETAQLTKQQTLQQASTSILAQANQL 273 D L K + A A + Sbjct: 238 TDDAENNTAVDLFKTTKSTAGTAEAKAIAGAI 269 Score = 75.5 bits (185), Expect = 2e-17 Identities = 54/142 (38%), Positives = 81/142 (57%) Query: 141 SASTMTFQVGSNSGASNQISLSLSASFDANTLGVGSAITIVGSDSAAAETNFSASIAAID 200 S +T + + ++L+ T++ D+AAA+ + + +A+ID Sbjct: 366 GESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINEDAAAAKKSTANPLASID 425 Query: 201 SALQTINNTRSDLGAAQNRLSSTISNLQNINENASAALGRIQDTDFAAETAQLTKQQTLQ 260 SAL ++ RS LGA QNR S I+NL N N ++A RI+D D+A E + ++K Q LQ Sbjct: 426 SALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIEDADYATEVSNMSKAQILQ 485 Query: 261 QASTSILAQANQLPSAVLKLLQ 282 QA TS+LAQANQ+P VL LL+ Sbjct: 486 QAGTSVLAQANQVPQNVLSLLR 507
>FLAGELLIN#Flagellin signature. Length = 507 Score = 62.8 bits (152), Expect = 1e-12 Identities = 82/517 (15%), Positives = 154/517 (29%), Gaps = 27/517 (5%) Query: 1 MRISTTQFFESTNTNYQRNYSNLNKTSEEVSSGIKLNTAGDDPVGAARVLQLAQQNSMLT 60 I+T T N ++ S+L+ E +SSG+++N+A DD G A + LT Sbjct: 2 QVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLT 61 Query: 61 QYETNIGTINTNVVTTETTLTSIIDTMQAAREQIVSAGSGAFTDSDRLAKASALKQYQSQ 120 Q N + TTE L I + +Q RE V A +G +DSD + ++Q + Sbjct: 62 QASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEE 121 Query: 121 ILGLMNSQDPNGQYIFSGSKASTPPYAQNADGSYSYKGDQTSVNLAVGDGLVMASNTTGF 180 I + N NG + S N + + + V DG + Sbjct: 122 IDRVSNQTQFNGVKVLSQDNQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEAT 181 Query: 181 EAFEQSVNTTRTSATRLSPATDDGKIGLSGGLVTSTPTYNASYQGGEPYTLTFLSGTQFK 240 +S T + + ++ ++ G V + T + +G Sbjct: 182 VGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDK---VYVNAANGQLTT 238 Query: 241 ITDASGTDVSSDTSSGGKFSHGSFDAQTFTFRGVEMTLNVNLPAADRVSDATADAALANR 300 + T V ++ A +G + + D + Sbjct: 239 DDAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGK 298 Query: 301 SYQLASTPDSVSTARSAGNTSTATVSSSAVGNTAADRTAFNNTFPTEGAILKFTSPTDYD 360 + T + +++ + + N F + + Sbjct: 299 VSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNES----AK 354 Query: 361 LYAAPLTSSSKPVSSGTMTGSTANASGVNFNISGTPAAGDQFIVESGTHQTENILNTLTA 420 L ++ K S T+ G+ A+ ++ SG N Sbjct: 355 LSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINEDAAAAK 414 Query: 421 AIKALSTPTDGNLVASQNMTAALNTALGNMSSAIEQASTARSSGGARQLAATAQGTTNDL 480 + L ++ SA+ + RSS GA Q + T Sbjct: 415 --------------------KSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGN 454 Query: 481 LKDNNTVEQGTYVNADIVEATTRLTLQKTMLDASQQV 517 N + +AD + ++ + + A V Sbjct: 455 TVTNLNSARSRIEDADYATEVSNMSKAQILQQAGTSV 491
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 194 bits (493), Expect = 5e-56 Identities = 138/478 (28%), Positives = 240/478 (50%), Gaps = 18/478 (3%) Query: 2 SLISIGLSGINASSAAINTIGNNTANVDTAGYSRQQVLTTASAQIALGQGVGYIGTGTTL 61 SLI+ +SG+NA+ AA+NT NN ++ + AGY+RQ + + G++G G + Sbjct: 2 SLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTT--IMAQANSTLGAGGWVGNGVYV 59 Query: 62 SDVRRIYNSYLDTQLQSSTALSADALAYSGQASKTDTLLSDSATGISVQLADFFTKMQGI 121 S V+R Y++++ QL+++ S+ A Q SK D +LS S + ++ Q+ DFFT +Q + Sbjct: 60 SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLSTSTSSLATQMQDFFTSLQTL 119 Query: 122 ATSATQSAERSSFLTQAGALSARFNSVSSQLSTQNDNVNTQLDTFTKKVNELTTTLASLN 181 ++A A R + + ++ L +F + L Q+ VN + ++N +ASLN Sbjct: 120 VSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASLN 179 Query: 182 KQI--TQASAGNATPNTLLDSRSEAVRQLNELVGVKV-VENNGNFDIYTGTGQSLVSGGT 238 QI A+PN LLD R + V +LN++VGV+V V++ G ++I G SLV G T Sbjct: 180 DQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQGST 239 Query: 239 SYKMSASPSPSDPLQYNVQIAYGQTQTDVT--SVLTGGSIGGLLRYRNEVLVPATNELGR 296 + +++A PS +DP + V G +L GS+GG+L +R++ L N LG+ Sbjct: 240 ARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTLGQ 299 Query: 297 TAMVLSDQVNSQMNQGIDSKGNFGSNLYSSINSADAITQRSIGKTTNSVGSGNLNVTIGD 356 A+ ++ N+Q G D+ G+ G + ++ I + ++ + T + G + T+ D Sbjct: 300 LALAFAEAFNTQHKAGFDANGDAGEDFFA-------IGKPAVLQNTKNKGDVAIGATVTD 352 Query: 357 TSKLTANDYEVTFSDSSNFSVRRLPNGESVGSGSLADNPPKQFEGFSVSLNGNTLAAGDS 416 S + A DY+++F D++ + V R + + + N F+G ++ T A DS Sbjct: 353 ASAVLATDYKISF-DNNQWQVTR-LASNTTFTVTPDANGKVAFDGLELTF-TGTPAVNDS 409 Query: 417 FKVIPTRTGASGISVALTDAKDIAAAAPLTATAGSSNSGTGGFTQPVVNTKSDIYDST 474 F + P + V +TD IA A+ S N N+K+ + Sbjct: 410 FTLKPVSDAIVNMDVLITDEAKIAMASE-EDAGDSDNRNGQALLDLQSNSKTVGGAKS 466 Score = 71.5 bits (175), Expect = 5e-15 Identities = 50/160 (31%), Positives = 76/160 (47%), Gaps = 16/160 (10%) Query: 532 NTVKLNVGYTDTTTTPNSKTAFELQMTISGSPVAN----DTFSIGLTG---GGSSDNRNA 584 + ++L TP +F L+ + D I + G SDNRN Sbjct: 394 DGLELTFT-----GTPAVNDSFTLKPVSDAIVNMDVLITDEAKIAMASEEDAGDSDNRNG 448 Query: 585 LAVVGLQTAKTVGVINGGVGTSLSGSYASTVSVVGTLASQSKNDVTATAAVVSQAKSSRD 644 A++ LQ+ G S + +YAS VS +G + K VV+Q + + Sbjct: 449 QALLDLQSNS----KTVGGAKSFNDAYASLVSDIGNKTATLKTSSATQGNVVTQLSNQQQ 504 Query: 645 SVSGVSLDEEASNLIKYQQYYTASSQIIKAAQTIFSTLIN 684 S+SGV+LDEE NL ++QQYY A++Q+++ A IF LIN Sbjct: 505 SISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALIN 544
>FLGFLGJ#Flagellar protein FlgJ signature. Length = 313 Score = 128 bits (322), Expect = 4e-36 Identities = 64/150 (42%), Positives = 96/150 (64%), Gaps = 1/150 (0%) Query: 251 NADQFVETMLPLAKEAAARIGVDPVMLVAQAALETGWGKSIMRQQDGSSSHNLFGIKAAG 310 ++ F+ + A+ A+ + GV +++AQAALE+GWG+ +R+++G S+NLFG+KA+G Sbjct: 148 DSKAFLAQLSLPAQLASQQSGVPHHLILAQAALESGWGQRQIRRENGEPSYNLFGVKASG 207 Query: 311 SWKGAEARAITSEFRDGKMVKETADFRSYDSYADSFHDLVSLLQNNSRYKEVVNSADKPE 370 +WKG T+E+ +G+ K A FR Y SY ++ D V LL N RY V +A E Sbjct: 208 NWKGPVTEITTTEYENGEAKKVKAKFRVYSSYLEALSDYVGLLTRNPRYAAVTTAASA-E 266 Query: 371 QFVKELQKAGYATDPDYASKISQIAKQMKS 400 Q + LQ AGYATDP YA K++ + +QMKS Sbjct: 267 QGAQALQDAGYATDPHYARKLTNMIQQMKS 296 Score = 60.1 bits (145), Expect = 3e-12 Identities = 55/179 (30%), Positives = 84/179 (46%), Gaps = 22/179 (12%) Query: 14 SGAYTDVNRLASLKH-GDKDSVENQKKVAREFESLFVSQMLKAMRSANEVLAKDNPMNTP 72 + A D L LK +D N + VAR+ E +FV MLK+MR A KD ++ Sbjct: 9 ASAAWDAQSLNELKAKAGEDPAANIRPVARQVEGMFVQMMLKSMRDAL---PKDGLFSSE 65 Query: 73 ATRQYQDMYDQQLAVTLSTRGNGIGLQDVLMRQLSKDKGINHAAPVNTTDAATAATDAAP 132 TR Y MYDQQ+A ++ G G+GL +++++Q++ ++ +T AAP Sbjct: 66 HTRLYTSMYDQQIAQQMTA-GKGLGLAEMMVKQMTPEQ-----------PLPEESTPAAP 113 Query: 133 AKTGLATSV-YQRPLWATRSVAADQAAAAASASGEGRNDMAMLNARRLSLPAKLTDRLL 190 K L T V YQ + A S G+ + +A +LSLPA+L + Sbjct: 114 MKFPLETVVRYQNQALSQLVQKAVPRNYDDSLPGDSKAFLA-----QLSLPAQLASQQS 167
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 431 bits (1110), Expect = e-153 Identities = 162/366 (44%), Positives = 217/366 (59%), Gaps = 10/366 (2%) Query: 7 LIAATLLLSTAFGVHAERLKDIASISGVRANQLIGYGLVVGLNGTGDQTTQTPFTLQTFN 66 A L + R+KDIAS+ R NQLIGYGLVVGL GTGD +PFT Q+ Sbjct: 13 FSALPFLSTPPAQADTSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDSLRSSPFTEQSMR 72 Query: 67 NMLSQFGIKVPAGSGTVQLKNVAAVAVYADLPAFAKPGQTVDITVSSIGNSKSLRGGALL 126 ML GI G KN+AAV V A+LP FA PG VD+TVSS+G++ SLRGG L+ Sbjct: 73 AMLQNLGITTQGGQS--NAKNIAAVMVTANLPPFASPGSRVDVTVSSLGDATSLRGGNLI 130 Query: 127 MTPMKGVDGNVYAIAQGNLVVGGFDAEGRDGSKITVNVPSSGRIPGGASVERSVPSGFNQ 186 MT + G DG +YA+AQG L+V GF A+G D + +T V +S R+P GA +ER +PS F Sbjct: 131 MTSLSGADGQIYAVAQGALIVNGFSAQG-DAATLTQGVTTSARVPNGAIIERELPSKFKD 189 Query: 187 GNTLTLNLNRSDFTTAKRIVDKINEL----LGPGVAQALDGGSVRVTAPLDPGQRVDYLS 242 L L L DF+TA R+ D +N G +A+ D + V P ++ Sbjct: 190 SVNLVLQLRNPDFSTAVRVADVVNAFARARYGDPIAEPRDSQEIAVQKP-RVADLTRLMA 248 Query: 243 ILENLEVDPGQTAAKVIINSRTGTIVIGQNVKVSPAAVTHGSLTVTITEDPIVSQPGALS 302 +ENL V+ T AKV+IN RTGTIVIG +V++S AV++G+LTV +TE P V QP S Sbjct: 249 EIENLTVET-DTPAKVVINERTGTIVIGADVRISRVAVSYGTLTVQVTESPQVIQPAPFS 307 Query: 303 GGQTAVVPRSRVNAQQELHPMFKFGPGTTLDEIVRAVNQVGAAPGDLMAILEALKQAGAL 362 GQTAV P++ + A QE + G L +V +N +G ++AIL+ +K AGAL Sbjct: 308 RGQTAVQPQTDIMAMQEGSKVA-IVEGPDLRTLVAGLNSIGLKADGIIAILQGIKSAGAL 366 Query: 363 QADLIV 368 QA+L++ Sbjct: 367 QAELVL 372
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 174 bits (443), Expect = 8e-57 Identities = 77/223 (34%), Positives = 112/223 (50%), Gaps = 13/223 (5%) Query: 19 ITLLSGCVAPTAKPNDPYYAPVLPRTPMSAAANNGAIYQAGF-----EQNLYGDRKAFRI 73 + L+GC + P P + AN G+I+Q+ Q L+ DR+ I Sbjct: 16 VLSLTGCAWIPSTPLVQGATSAQPVPGPTPVAN-GSIFQSAQPINYGYQPLFEDRRPRNI 74 Query: 74 GDIITITLSERMAASKAATSAMSKDSTNSIGLTSLFGSGLTTNNPIGGNDLSLNAGYNGA 133 GD +TI L E ++ASK++++ S+D + G + G + +G Sbjct: 75 GDTLTIVLQENVSASKSSSANASRDGKTNFGFDT---VPRYLQGLFGNARADV--EASGG 129 Query: 134 RTTKGDGKAAQSNSLTGSVTVTVADVLPNGILAVRGEKWMTLNTGDELVRIAGLVRADDI 193 T G G A SN+ +G++TVTV VL NG L V GEK + +N G E +R +G+V I Sbjct: 130 NTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGEKQIAINQGTEFIRFSGVVNPRTI 189 Query: 194 ATDNTVSSTRIADARITYSGTGAFADTSQPGWFDRFF--LSPL 234 + NTV ST++ADARI Y G G + GW RFF LSP+ Sbjct: 190 SGSNTVPSTQVADARIEYVGNGYINEAQNMGWLQRFFLNLSPM 232
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 42.6 bits (100), Expect = 9e-07 Identities = 12/41 (29%), Positives = 20/41 (48%) Query: 220 LENSNVSTVEELVNMITTQRAYEMNSKVISTADQMLQNLTQ 260 S V+ EE N+ Q+ Y N++V+ TA+ + L Sbjct: 504 QSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALIN 544 Score = 39.6 bits (92), Expect = 1e-05 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 14/75 (18%) Query: 5 LYVAKTGLAAQDTNLTTISNNLANVSTTGFKSDRAEFQDLLYQIKRQPGAQSTQDSELPS 64 + A +GL A L T SNN+++ + G+ RQ + +S L + Sbjct: 4 INNAMSGLNAAQAALNTASNNISSYNVAGY--------------TRQTTIMAQANSTLGA 49 Query: 65 GLQLGTGVRIVGTQK 79 G +G GV + G Q+ Sbjct: 50 GGWVGNGVYVSGVQR 64
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 47.3 bits (112), Expect = 5e-09 Identities = 22/80 (27%), Positives = 35/80 (43%) Query: 6 DHKAQTHQRIVKEASMRFRRDGIGATGLQPLMKALGLTHGGFYAHFKSKDDLVEQALSHA 65 +T Q I+ A F + G+ +T L + KA G+T G Y HFK K DL + + Sbjct: 7 QEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELS 66 Query: 66 FDNVKGITSDVFARQDSLSE 85 N+ + + A+ Sbjct: 67 ESNIGELELEYQAKFPGDPL 86
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 69.0 bits (169), Expect = 1e-14 Identities = 58/323 (17%), Positives = 112/323 (34%), Gaps = 68/323 (21%) Query: 299 TVLVTGAGGSIGSELCRQILLLKPTQLLLLDHSEFNLYSILSELEQRSARESLSVKLLPI 358 LVTGA G IG + ++ LL Q++ +D N Y +S + R E L+ Sbjct: 2 KYLVTGAAGFIGFHVSKR-LLEAGHQVVGID--NLNDYYDVSLKQAR--LELLAQPGFQF 56 Query: 359 L-GSVRNHPKLLSIMKTWKVDTVYHAAAYKHVPMVEHNIAEGVINNVVGTLNTAQAALQA 417 + + + + + + V+ + V N +N+ G LN + Sbjct: 57 HKIDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHN 116 Query: 418 GVSNFVLIST---------------DKAVRPTNVMGSTKRLAELILQALSRETAPVIFGD 462 + + + S+ D P ++ +TK+ EL+ S ++G Sbjct: 117 KIQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSH-----LYG- 170 Query: 463 KANVYQVNKTRFTMVRFGNVLGSSGS---VIPLFHKQIQSGGPLTV-THPKITRYFMTIP 518 T +RF V G G + F K + G + V + K+ R F I Sbjct: 171 ---------LPATGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYID 221 Query: 519 EAAQLVIQA----------GSMGHGGD--------VFVLDMGEPVKIVELAEKMIHLSGL 560 + A+ +I+ ++ G V+ + PV++++ + + Sbjct: 222 DIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQAL------ 275 Query: 561 AIRSEKNPHGDISIEFTGLRPGE 583 E + L+PG+ Sbjct: 276 ----EDALGIEAKKNMLPLQPGD 294
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 79.8 bits (197), Expect = 4e-19 Identities = 63/346 (18%), Positives = 120/346 (34%), Gaps = 50/346 (14%) Query: 8 VAITGATGFVGSAVVRRLIERTGCSVRVAVRGAYVVSSPRIDVVSAQSLAPDNQWASFVT 67 +TGA GF+G V +RL+E V + Y + + LA F Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYY--DVSLKQARLELLAQPG--FQFHK 58 Query: 68 G----------------ADVVIHCAARVHVLNETADAPDQEYFRANVTATLNLAEQAAAA 111 + V R+ V + Y +N+T LN+ E Sbjct: 59 IDLADREGMTDLFASGHFERVFISPHRLAVRYSLENP--HAYADSNLTGFLNILEGCRHN 116 Query: 112 GVKRFIFISSIKANGESTLAGA----PFTASDPC-TPLDAYGVSKHRAEEGLRELSARTG 166 ++ ++ SS S++ G PF+ D P+ Y +K E S G Sbjct: 117 KIQHLLYASS------SSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYG 170 Query: 167 MQVVIIRPVLVYGPGVKAN--FRSMMRWLDKGLPLPL-GSIDNRRSLVAVDNLADLVTVC 223 + +R VYGP + + + + +G + + +R +D++A+ + Sbjct: 171 LPATGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRL 230 Query: 224 VDHPAAADQTFLVSDGDDLSTSRLLREMGKALGKPARLLPVPASLLKAAAALLGKKAFSQ 283 D AD + V G ++ R P L+ ++A LG +A + Sbjct: 231 QDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELM----DYIQALEDALGIEA--K 284 Query: 284 RLCNSLQ--------VDISKTCTMLDWHPPVSIEHAMQDTARYYLE 321 + LQ D ++ + P +++ +++ +Y + Sbjct: 285 KNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRD 330
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 115 bits (291), Expect = 9e-38 Identities = 34/89 (38%), Positives = 52/89 (58%), Gaps = 1/89 (1%) Query: 2 TKSELIERIVTHQGLLSSKDVELAIKTMLEQMSQCLATGDRIEIRGFGSFSLHYRAPRVG 61 K +LI + V L+ KD A+ + +S LA G+++++ GFG+F + RA R G Sbjct: 3 NKQDLIAK-VAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKG 61 Query: 62 RNPKTGQSVSLDGKFVPHFKPGKELRDRV 90 RNP+TG+ + + VP FK GK L+D V Sbjct: 62 RNPQTGEEIKIKASKVPAFKAGKALKDAV 90
>adhesinmafb#Neisseria meningitidis: adhesin MafB signature. Length = 467 Score = 29.6 bits (66), Expect = 0.022 Identities = 30/142 (21%), Positives = 48/142 (33%), Gaps = 22/142 (15%) Query: 128 EVFREVVAGAVN-----FGVVPVENSTEGAVNHTLDSFLEHDMVICGEVELRIHHHLLVG 182 E V AGA+N + + + G + + + + E + + L G Sbjct: 226 EFINGVAAGALNPFISAGEALGIGDILYGTRYAIDKAAMRNIAPLPAEGKFAVIGGL--G 283 Query: 183 ESTKTESITRIYSHAQSLAQCRKWLDAHYPNV-ERVAVASN-AEAAKRVK----GEWNSA 236 E TR +W+ + PN E V N A AAK K + A Sbjct: 284 SVAGFEKNTR--------EAVDRWIQEN-PNAAETVEAVFNVAAAAKVAKLAKAAKPGKA 334 Query: 237 AIAGDMAAGLYGLTRLAEKIED 258 A++GD A L++ Sbjct: 335 AVSGDFADSYKKKLALSDSARQ 356
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 44.8 bits (106), Expect = 5e-07 Identities = 35/206 (16%), Positives = 71/206 (34%), Gaps = 25/206 (12%) Query: 29 RLAARQAESALLDERLSMAQMAQEGLNAQLDACRDEVSDLSQANAAKQADLAALRREVEL 88 +L A AE+ L + S+ Q E Q+ + E++ L + + + E L Sbjct: 126 KLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVL 185 Query: 89 LRQESDNARETAQDWNHERAAREAELRRLDAQCAALNAELR---EQQDGHQQRLNDLQ-- 143 +E W +++ +E L + A+ + A + + RL+D Sbjct: 186 RLTS--LIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSL 243 Query: 144 -----GSRDELRAQFAELAGKIFDEREQRFAETSQQ--QLGQLLTPLKERIQSFEKRVEE 196 ++ + Q + E Q Q+ + KE Q V + Sbjct: 244 LHKQAIAKHAVLEQENKYV-----EAVNELRVYKSQLEQIESEILSAKEEYQ----LVTQ 294 Query: 197 SYQNEARERFSLAKELERLQQLNQRL 222 ++NE ++ L + + + L L Sbjct: 295 LFKNEILDK--LRQTTDNIGLLTLEL 318
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 41.4 bits (97), Expect = 4e-06 Identities = 30/123 (24%), Positives = 61/123 (49%), Gaps = 3/123 (2%) Query: 66 GALADRFGAAKVVFVGGVLYAAGLLCMSTADSSLSLSLSAGLLIGIGLSGTSFSVILGVV 125 G L+D+ G +++ G ++ G + S SL + A + G G + ++++ VV Sbjct: 70 GKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAG-AAAFPALVMVVV 128 Query: 126 GRALPAEKRSMGMGIASAAGSFGQFAMLPGTLGLIS-WLGWSGALLVLGVMVALILPLVG 184 R +P E R G+ + + G+ + P G+I+ ++ WS LL+ + + + L+ Sbjct: 129 ARYIPKENRGKAFGLIGSIVAMGE-GVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMK 187 Query: 185 MLK 187 +LK Sbjct: 188 LLK 190 Score = 32.9 bits (75), Expect = 0.002 Identities = 22/138 (15%), Positives = 48/138 (34%), Gaps = 12/138 (8%) Query: 12 LLGSALILALSLGTRHGFGLFLAPMSAEFGWGREVFAFAIALQNLMWGLAQPFAGALADR 71 + G ++ + H V F + +++G G L DR Sbjct: 272 VAGFVSMVPYMMKDVHQLSTAEIG---------SVIIFPGTMSVIIFG---YIGGILVDR 319 Query: 72 FGAAKVVFVGGVLYAAGLLCMSTADSSLSLSLSAGLLIGIGLSGTSFSVILGVVGRALPA 131 G V+ +G + L S + S ++ ++ +G + +VI +V +L Sbjct: 320 RGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFTKTVISTIVSSSLKQ 379 Query: 132 EKRSMGMGIASAAGSFGQ 149 ++ GM + + + Sbjct: 380 QEAGAGMSLLNFTSFLSE 397
>SUBTILISIN#Subtilisin serine protease family (S8) signature. Length = 326 Score = 152 bits (386), Expect = 7e-43 Identities = 72/384 (18%), Positives = 118/384 (30%), Gaps = 99/384 (25%) Query: 63 NADWGLGAINADQAYAAGYSGKDIKLGIFDQPVYAPHPEFDSPNKVVNLVTSGIREYTDP 122 G+ I A + G+ +K+ + D A HP+ + Sbjct: 21 EIPRGVEMIQAPAVWNQTR-GRGVKVAVLDTGCDADHPDLKAR----------------- 62 Query: 123 YIPVKAGDAFRYDGAPSLDSGGKLGNHGTHVGGIAGGNRDGGPMHGVAYNAQIISA---D 179 + G F D + HGTHV G + + GVA A ++ + Sbjct: 63 ---IIGGRNFTDDDEGDPEIFKDYNGHGTHVAGTIAATENENGVVGVAPEADLLIIKVLN 119 Query: 180 NGDPGPEDGIVLGNDGAVYQAGWNALVNSGARVINNSWGIGITDRFDKGGRDPAFPHFTV 239 G D I+ G + +I+ S G G D H Sbjct: 120 KQGSGQYDWII---------QGIYYAIEQKVDIISMSLG---------GPEDVPELH--- 158 Query: 240 QDAQVQFDQIRQILGTRPGGAYQGAIDAARSGVVTIFAAGNDYNLNNPDAMAGLGYFVPD 299 + A S ++ + AAGN+ P Sbjct: 159 ----------------------EAVKKAVASQILVMCAAGNE----GDGDDRTDELGYPG 192 Query: 300 IAPNWLTVAALQQNPDAAAAATTPYTLSTFSSRCGYTASFCVSAPGTRIYSSVLNGTSLA 359 ++V A+ + S FS+ + APG I S+V G Sbjct: 193 CYNEVISVGAINFD----------RHASEFSNSNNEV---DLVAPGEDILSTVPGG---- 235 Query: 360 DLTVGWANKNGTSMAAPHVAGSMAVLMERFPY-----MTGAQVADVLKTTATDLGAPGVD 414 +A +GTSMA PHVAG++A++ + +T ++ L LG Sbjct: 236 ----KYATFSGTSMATPHVAGALALIKQLANASFERDLTEPELYAQLIKRTIPLG--NSP 289 Query: 415 ALYGWGMINLGKAINGPSMFVTEA 438 + G G++ L +F T+ Sbjct: 290 KMEGNGLLYLTAVEELSRIFDTQR 313
>SUBTILISIN#Subtilisin serine protease family (S8) signature. Length = 326 Score = 161 bits (408), Expect = 1e-45 Identities = 73/323 (22%), Positives = 113/323 (34%), Gaps = 53/323 (16%) Query: 58 WGLGRIQADQAYAAGITGAGVKIGALDSGFDPSHPEATPSRYHAVTATGTYVDGSPFSIT 117 G+ IQA + G GVK+ LD+G D HP+ + G F+ Sbjct: 24 RGVEMIQAPAVWNQT-RGRGVKVAVLDTGCDADHPDLK----------ARIIGGRNFTDD 72 Query: 118 GAINPN----NDTHGTHVTGTMGAARDGVGMHGVAYNAQVYVGNTNQNDSFLFGPNPDPQ 173 +P + HGTHV GT+ A + G+ GVA A + + G Sbjct: 73 DEGDPEIFKDYNGHGTHVAGTIAATENENGVVGVAPEADLLIIKVLNKQ----GSGQYDW 128 Query: 174 YFKAVYGALADAGVRAINNSWGSQPADVTYATEAGVRAAYAQHYNRGTWLDEAANVSRKG 233 + +Y A + V I+ S G + V+ A Sbjct: 129 IIQGIYYA-IEQKVDIISMSLG--GPEDVPELHEAVKKAV-----------------ASQ 168 Query: 234 VINVFSAGNTGYANASVRASLPFFEPDLEGHWLAVSGLDSSNGQRYNQCGLSKYWCITMP 293 ++ + +AGN G + P ++V ++ + + + P Sbjct: 169 ILVMCAAGNEGDGDDRT---DELGYPGCYNEVISVGAINF-DRHASEFSNSNNEVDLVAP 224 Query: 294 GRLVNSTVPGGGYGIKSGTSMSAPHATGALALVMERFPY-----MTNEQALQVLLTTATQ 348 G + STVPGG Y SGTSM+ PH GALAL+ + +T + L+ Sbjct: 225 GEDILSTVPGGKYATFSGTSMATPHVAGALALIKQLANASFERDLTEPELYAQLIKRTIP 284 Query: 349 LDGSITQAPTNSVGWGVANLERA 371 L S G G+ L Sbjct: 285 LGNS-----PKMEGNGLLYLTAV 302
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 31.7 bits (72), Expect = 0.006 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 2/63 (3%) Query: 161 LALAVGVYL-LDDLPSIIMIP-IVMVVLGVFLEVRQRSSIRKTLEEHPKAFTSALIALTY 218 L A+G +L LP ++++ +V +G+ L + + K + P + IAL + Sbjct: 218 LLAALGAWLGWQALPIVLLLSSLVGAFMGIGLILLRNHHQSKPIPFGPYLAIAGWIALLW 277 Query: 219 SDS 221 DS Sbjct: 278 GDS 280
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 35.4 bits (81), Expect = 0.001 Identities = 29/203 (14%), Positives = 56/203 (27%), Gaps = 31/203 (15%) Query: 144 PATSAQGLAATRSRNQQRSASSASESRMPVAPPAAVQGKHYTVASGDTLNGIASRLQGPG 203 P + + S N++ + PV PPA T + S+ + Sbjct: 1000 PNNIQADVPSVPSNNEEIARVD----EAPVPPPAPA-----TPSETTETVAENSKQESKT 1050 Query: 204 NKVSASQLADGIRSLNPQVFAAGAGSALKVGQDLLLPDAAVLPTAAAPAASAAAPSPKPA 263 + + + Q+ + A A + A S Sbjct: 1051 VEKNEQDATE------------------TTAQNREVAKEAKSNVKANTQTNEVAQSGSET 1092 Query: 264 ELQRTAEQLSAAAIENQQLTQSLEALKAQTQELQEQMSGKDKQIIALRSDLATAQSAATP 323 + +T E A +E ++ + + ++ Q+S K +Q + A Sbjct: 1093 KETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQ----SETVQPQAEPARE 1148 Query: 324 VAPATTTPAPATPVAAPAAPAQP 346 P P + A QP Sbjct: 1149 NDPTVNIKEPQSQTNTTADTEQP 1171
>PF06917#Periplasmic pectate lyase Length = 555 Score = 28.0 bits (62), Expect = 0.028 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%) Query: 150 PEFADIAQDANLM--DDMIVEIPEALTALYLLCQAPD 184 PEF +IA++AN++ D + I L L +L Q PD Sbjct: 297 PEFGEIAREANVLFRDMRPLLIDNPLAMLDILRQQPD 333
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 37.6 bits (87), Expect = 8e-06 Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 3/56 (5%) Query: 86 LEAIFVLPKFMGQGIGKKMVTHLEHLARKAGLAEIHLEATLN---AESFYKRCGFT 138 +E I V + +G+G ++ A++ + LE A FY + F Sbjct: 92 IEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFI 147
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 96.3 bits (239), Expect = 4e-26 Identities = 62/258 (24%), Positives = 110/258 (42%), Gaps = 31/258 (12%) Query: 5 KKLLLTGASRGIGHATVKHFNAAGWEVFTAS-RQNWVDDCPWAEGLL----NHIHLDLEN 59 K +TGA++GIG A + + G + ++ + D+ + Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 60 IDSVSESMAAIKDKLGGRLDALVNNAGVSPKTEDGGRMGVLES-DYSTWIKVFNVNLFST 118 ++ E A I+ ++G +D LVN AGV R G++ S W F+VN Sbjct: 69 SAAIDEITARIEREMG-PIDILVNVAGVL-------RPGLIHSLSDEEWEATFSVNSTGV 120 Query: 119 ALLGRGLFDELKAAK-GSIINVTSIAGSKVHPFAGV-AYATSKAALSALTREMAFDFGPH 176 R + + + GSI+ V S P + AYA+SKAA T+ + + + Sbjct: 121 FNASRSVSKYMMDRRSGSIVTVGSNPAGV--PRTSMAAYASSKAAAVMFTKCLGLELAEY 178 Query: 177 GIRVNAIAPGEIDTSI-------------LSPGTAEIVERLVPMHRLGKPEEVASLIYFL 223 IR N ++PG +T + + G+ E + +P+ +L KP ++A + FL Sbjct: 179 NIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFL 238 Query: 224 CTAGASYVNGAEIHVNGG 241 + A ++ + V+GG Sbjct: 239 VSGQAGHITMHNLCVDGG 256
>CABNDNGRPT#NodO calcium binding signature. Length = 479 Score = 91.2 bits (226), Expect = 6e-21 Identities = 58/221 (26%), Positives = 79/221 (35%), Gaps = 21/221 (9%) Query: 466 DRIDLTNLGFTGLGSGKGGTLNISYNATLDRTYVKSLDADASGNRFELGLSGNLKDTLNA 525 + T G S + + DA + G S N + LN Sbjct: 261 NMTTRTGDSVYGFNSNTDRDF-YTATDSSKALIFSVWDAGGTDTFDFSGYSNNQRINLNE 319 Query: 526 SHF------IFQHVVEGTAGGDTLTGTDGNDVLNGNAGTDRIDGGAGADTITGGADADTL 579 F + + G GND+L GN+ + + GGAG D + GGA ADTL Sbjct: 320 GSFSDVGGLKGNVSIAHGVTIENAIGGSGNDILVGNSADNILQGGAGNDVLYGGAGADTL 379 Query: 580 TGGAGADLFIYNSRLDSYRNYTASGTKQSDTITDFNPAEDRIDLSSIGLRGIGD------ 633 GGAG D F+Y S DS D I DF D+IDLS+ G Sbjct: 380 YGGAGRDTFVYGSGQDST-------VAAYDWIADFQKGIDKIDLSAFRNEGQLSFVQDQF 432 Query: 634 -GSANTIYLSVNADGSKTYIKTDAVDSTGNRFEIALQGNLA 673 G + L +A S T + + F + + G A Sbjct: 433 TGKGQEVMLQWDAANSITNLWLHEAGHSSVDFLVRIVGQAA 473 Score = 89.3 bits (221), Expect = 2e-20 Identities = 58/223 (26%), Positives = 94/223 (42%), Gaps = 28/223 (12%) Query: 321 SDNLIRGNTITGSDNSTYGVAERNED----GTDRNSIVGNTI-----------SHTSKGL 365 L N T + +S YG + TD + + ++ S S Sbjct: 254 IQRLYGANMTTRTGDSVYGFNSNTDRDFYTATDSSKALIFSVWDAGGTDTFDFSGYSNNQ 313 Query: 366 TLVYGDGSFA--GDAFPLVTVNGTEGNDVITGGAAHEQIFGLAGKDTLNGGSGDDILVGG 423 + +GSF+ G V++ + GG+ ++ + G + + L GG+G+D+L GG Sbjct: 314 RINLNEGSFSDVGGLKGNVSIAHGVTIENAIGGSGNDILVGNSADNILQGGAGNDVLYGG 373 Query: 424 AGADKLTGGAGADTFRFDQLTDSYRTATTSSTDLVTDFDISQDRIDLTNLGFTGLGS--- 480 AGAD L GGAG DTF + DS ++ D + DF D+IDL+ G S Sbjct: 374 AGADTLYGGAGRDTFVYGSGQDST----VAAYDWIADFQKGIDKIDLSAFRNEGQLSFVQ 429 Query: 481 ----GKGGTLNISYNATLDRTYVKSLDADASGNRFELGLSGNL 519 GKG + + ++A T + +A S F + + G Sbjct: 430 DQFTGKGQEVMLQWDAANSITNLWLHEAGHSSVDFLVRIVGQA 472 Score = 86.6 bits (214), Expect = 2e-19 Identities = 46/146 (31%), Positives = 64/146 (43%), Gaps = 14/146 (9%) Query: 794 LTGTENAEALYGTEGNDTILGLGGDDTLRGDTGADIINGGAGRDALYGGADADTFVYSAL 853 + E G GND ++G D+ L+G G D++ GGAG D LYGGA DTFVY + Sbjct: 334 IAHGVTIENAIGGSGNDILVGNSADNILQGGAGNDVLYGGAGADTLYGGAGRDTFVYGSG 393 Query: 854 TDSYRDYDAGGLTATDTIYDFTPGQDKIDVSALGFLGLGN-------GEDHTLYMTLNET 906 DS + A D I DF G DKID+SA G + G+ + + + Sbjct: 394 QDST-------VAAYDWIADFQKGIDKIDLSAFRNEGQLSFVQDQFTGKGQEVMLQWDAA 446 Query: 907 GDKTYIKSATADADGNRFEIALSGNL 932 T + A F + + G Sbjct: 447 NSITNLWLHEAGHSSVDFLVRIVGQA 472 Score = 70.8 bits (173), Expect = 2e-14 Identities = 63/298 (21%), Positives = 107/298 (35%), Gaps = 22/298 (7%) Query: 1314 NAVKNVIIGNASNNILDGAAGADMLTGGDGSDSYYVDDAADRVVETNTDAQVGGVDTVYS 1373 NA + N + D + M G+ + + + +Y Sbjct: 203 NAGEGDPSYNDAVYAEDSYQFSIMSYWGENETGADYNGHYGG---APMIDDIAAIQRLYG 259 Query: 1374 SLASYTLGANLENLVINSSGAANATGNALDNLIYAGAGDNVMDGRDGNDTVSYLFATAGV 1433 + + T + +++ T + D G DT + + Sbjct: 260 ANMT-TRTGDSVYGFNSNTDRDFYTATDSSKALIFSVWDA-----GGTDTFDFSGYSNNQ 313 Query: 1434 TVALNTSAQQATGGSGLDTLKGTENLIGSQFADTLTGNKNANTLSGGDGNDTLSGGAGDD 1493 + LN + GG KG ++ + G + L G ++ L GGAG+D Sbjct: 314 RINLNEGSFSDVGGL-----KGNVSIAHGVTIENAIGGSGNDILVGNSADNILQGGAGND 368 Query: 1494 VLIGGSGADTLIGGTGADHYVFNGISDTGLGGLRDIINGFKTVEGDKLDFSGFD-ARPLT 1552 VL GG+GADTL GG G D +V+ D+ + D I F+ DK+D S F L+ Sbjct: 369 VLYGGAGADTLYGGAGRDTFVYGSGQDSTVAA-YDWIADFQK-GIDKIDLSAFRNEGQLS 426 Query: 1553 DGHDAFVFIGNAAFSANNSGELRFADGVLYGNIDDNVGADFEIQLTGVQTLQAADIIV 1610 D F G ++ + L+ + + DF +++ G +DIIV Sbjct: 427 FVQDQFTGKGQEVMLQWDAAN---SITNLWLHEAGHSSVDFLVRIVGQAA--QSDIIV 479 Score = 50.7 bits (121), Expect = 3e-08 Identities = 48/222 (21%), Positives = 80/222 (36%), Gaps = 17/222 (7%) Query: 1234 DDTLVGSSGNDVLDGDQGADDMSGGDGNDIYV----VDNAFDTVTESNDS-PSQVDTVVS 1288 + T + + D + D + + DT S S +++ Sbjct: 261 NMTTRTGDSVYGFNSNTDRDFYTATDSSKALIFSVWDAGGTDTFDFSGYSNNQRINLNEG 320 Query: 1289 SVSWTLGANVENLVLTGVSAINGIGNAVKNVIIGNASNNILDGAAGADMLTGGDGSDSYY 1348 S S G + GV+ N IG + ++++GN+++NIL G AG D+L GG G+D+ Y Sbjct: 321 SFSDVGGLKGNVSIAHGVTIENAIGGSGNDILVGNSADNILQGGAGNDVLYGGAGADTLY 380 Query: 1349 VDDAADRVV-ETNTDAQVGGVDTVYSSLASYTLGANLENLVINSSGAANATGNALDNLIY 1407 D V + D+ V D + I+ S N + + Sbjct: 381 GGAGRDTFVYGSGQDSTVAAYDWIADFQKGID--------KIDLSAFRNEGQLSFVQDQF 432 Query: 1408 AGAGDNVMDGRDGNDTVSYL---FATAGVTVALNTSAQQATG 1446 G G VM D ++++ L A L QA Sbjct: 433 TGKGQEVMLQWDAANSITNLWLHEAGHSSVDFLVRIVGQAAQ 474 Score = 47.3 bits (112), Expect = 4e-07 Identities = 21/53 (39%), Positives = 29/53 (54%) Query: 1227 HIFGTSDDDTLVGSSGNDVLDGDQGADDMSGGDGNDIYVVDNAFDTVTESNDS 1279 + G S D+ L G +GNDVL G GAD + GG G D +V + D+ + D Sbjct: 351 ILVGNSADNILQGGAGNDVLYGGAGADTLYGGAGRDTFVYGSGQDSTVAAYDW 403
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 41.0 bits (96), Expect = 5e-06 Identities = 38/171 (22%), Positives = 63/171 (36%), Gaps = 22/171 (12%) Query: 27 LQQRQRASQLAQALRNELQKA------VIGQNAVIDDVLT----ALIGGGHVLLEGVPGL 76 + RA + ++L+ ++G++A + ++ + +++ G G Sbjct: 112 IGIIGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGT 171 Query: 77 GKTLLVRAL---ASCIGCEFARIQ---FTPDLMPSDVTGHAVYDLQTEQFKLRKGPLFT- 129 GK L+ RAL F I DL+ S++ GH T G F Sbjct: 172 GKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAF-TGAQTRSTG-RFEQ 229 Query: 130 ---NLLLADEINRAPAKTQAALLEAMQERQVTLEGRALPIPQPFMVLATQN 177 L DEI P Q LL +Q+ + T G PI ++A N Sbjct: 230 AEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATN 280
>SALSPVAPROT#Salmonella virulence plasmid 28.1kDa A protein signature. Length = 255 Score = 32.5 bits (73), Expect = 0.007 Identities = 34/126 (26%), Positives = 51/126 (40%), Gaps = 19/126 (15%) Query: 218 KQHPFQFPYNFHFQQISLGLAGKKPMLGELNYCVSLELP---TTSRYGSDYGKVQHSSAI 274 +Q P PY+F Q+ L L L ++ S++ P + S G + S Sbjct: 127 QQIPTLLPYHFPHDQVELSLLNTDVSLEDIISESSIDWPWFLSNSLTGDN-------SNY 179 Query: 275 AQVLMSGAGPEQQAIVIEPALSSLANADTSADLTRQFFKTKYNVDYVDDASNPLNNLNVF 334 A L S PEQQ + EP + T+ DLT F++T + D P LN F Sbjct: 180 AMELASRLSPEQQTLPTEP------DNSTATDLT-SFYQTNLGLKTAD--YTPFEALNTF 230 Query: 335 LEKTGL 340 + + Sbjct: 231 ARQLAI 236
>SSBTLNINHBTR#Streptomyces subtilisin inhibitor signature. Length = 144 Score = 31.3 bits (70), Expect = 0.015 Identities = 16/40 (40%), Positives = 20/40 (50%) Query: 1225 AESAASAASIVASAMKVAPNHAGIHAGATGGMAVGAAAGG 1264 ESAA+AA + A + AP +G H A A AA G Sbjct: 50 GESAATAAPLRAVTLTCAPTASGTHPAAAAACAELRAAHG 89
>SALSPVBPROT#Salmonella virulence plasmid 65kDa B protein signature. Length = 591 Score = 283 bits (725), Expect = 1e-84 Identities = 148/354 (41%), Positives = 197/354 (55%), Gaps = 12/354 (3%) Query: 19 VATPALPKGGGAIQSIGKGWGSVGTSGAASLEIALPISPGRGYAPALSLSYQSTSGNGVF 78 + P LPKGG A+ G G AS+ + LPIS RG+APAL+L Y S GNG F Sbjct: 15 ITPPFLPKGGKALSQ-------SGPDGLASITLPLPISAERGFAPALALHYSSGGGNGPF 67 Query: 79 GLGWNLNTSKVARRASKGVPSYTDDDLIFGPGGDVCLPERDDSGALVSSQVSRYNGDDLD 138 G+GW+ T +AR S GVP Y D D GP G+V + A Y Sbjct: 68 GVGWSCATMSIARSTSHGVPQYNDSDEFLGPDGEVLVQTLSTGDAPNPVTCFAYGDVSFP 127 Query: 139 ATYQVVRYFSRVEGAFARIEHWRVNNTDPGFWLIHGADGSLNLYGRKISSRIADPADMNR 198 +Y V RY R E +F R+E+W N+ FWL+H ++G L+L G+ ++R++DP + Sbjct: 128 QSYTVTRYQPRTESSFYRLEYWVGNSNGDDFWLLHDSNGILHLLGKTAAARLSDPQAASH 187 Query: 199 VAEWLLDESMNAVGEHILYEYKPE--DHQGLPEDHP-RNFRAQRYLSRVRYGNAKAHPLL 255 A+WL++ES+ GEHI Y Y E D+ L + R+ A RYLS+V+YGNA L Sbjct: 188 TAQWLVEESVTPAGEHIYYSYLAENGDNVDLNGNEAGRDRSAMRYLSKVQYGNATPAADL 247 Query: 256 YLWEEDSLDDLLWHFDLLFDYGQRDTRSDPPPEYDEQFTWPVRSDPHSSFAYGFELGNLR 315 YLW + + W F L+FDYG+R PP + Q +W R DP S + YGFE+ R Sbjct: 248 YLW-TSATPAVQWLFTLVFDYGERGVDPQVPPAFTAQNSWLARQDPFSLYNYGFEIRLHR 306 Query: 316 LCRQVLMFHHFPNELGASPLLTRRLLLEHYQTTLGYNMLSAAHSEAWDGTDWRR 369 LCRQVLMFHHFP+ELG + L RLLLE Y L AA + A++G +RR Sbjct: 307 LCRQVLMFHHFPDELGEADTLVSRLLLE-YDENPILTQLCAARTLAYEGDGYRR 359
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 74.9 bits (184), Expect = 6e-16 Identities = 70/287 (24%), Positives = 103/287 (35%), Gaps = 79/287 (27%) Query: 348 VMGHVDHGKTSLLDYIRRAKVAAGEAG------------------GITQHIGAYHVETER 389 V+ HVD GKT+L + + A E G GIT G + E Sbjct: 8 VLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWEN 67 Query: 390 GMVTFLDTPGHAAFTAMRARGAKATDIVILVVAADDGVMPQTIEAVQHAVAA-GVPLVVA 448 V +DTPGH F A R D IL+++A DGV QT + HA+ G+P + Sbjct: 68 TKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQT-RILFHALRKMGIPTIFF 126 Query: 449 VNKIDKPGADLDR----IRSELSVHGVT-----------------SEEWG----GDTPFV 483 +NKID+ G DL I+ +LS V SE+W G+ + Sbjct: 127 INKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEGNDDLL 186 Query: 484 SV-------------------------------SAKMGTGVDELLEAVLLQAEVLELKAT 512 SAK G+D L+E + + Sbjct: 187 EKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVIT--NKFYSSTHR 244 Query: 513 PSAPGRGVVVESRLDKGRGPVATVLVQDGTLRQGDMVLVGSNFGRIR 559 + G V + + R +A + + G L D V + S +I+ Sbjct: 245 GQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRI-SEKEKIK 290
>SECGEXPORT#Protein-export SecG membrane protein signature. Length = 110 Score = 123 bits (311), Expect = 4e-40 Identities = 52/106 (49%), Positives = 69/106 (65%), Gaps = 3/106 (2%) Query: 1 MLETVVIVFHLLGALGVVALVLLQQGKGADAGASFGAGASNTVFGGQGTSTFLSKFTAIL 60 M E +++VF L+ A+G+V L++LQQGKGAD GASFGAGAS T+FG G+ F+++ TA+L Sbjct: 1 MYEALLVVF-LIVAIGLVGLIMLQQGKGADMGASFGAGASATLFGSSGSGNFMTRMTALL 59 Query: 61 AACFFITSLGLGYFAKEKAQQLTQ-VGLPDPAVLEVKQKPAADDVP 105 A FFI SL LG K + ++ L PA E Q PAA P Sbjct: 60 ATLFFIISLVLGNINSNKTNKGSEWENLSAPAKTEQTQ-PAAPAKP 104
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 34.4 bits (79), Expect = 0.001 Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 18/82 (21%) Query: 190 VLMVGPPGTGKTLIAKAI---AGEAKVPFFT-----ISGSDFVEMFVGV------GASRV 235 +++ G GTGK L+A+A+ PF I G GA Sbjct: 163 LMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTR 222 Query: 236 RD-MFEQAKKHAPCIIFIDEID 256 FEQA+ +F+DEI Sbjct: 223 STGRFEQAEGGT---LFLDEIG 241
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 30.2 bits (68), Expect = 0.007 Identities = 18/110 (16%), Positives = 35/110 (31%), Gaps = 13/110 (11%) Query: 103 LEQILEAVGNTQVDLVISDM-APNMSGLSAV--------DMPRAMFLCELALDLAGRVLR 153 + + DLV++D+ P+ + + D+P + + A + Sbjct: 36 AATLWRWIAAGDGDLVVTDVVMPDENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASE 95 Query: 154 PGG-DFLIKVFQGEGFDVYHKDIRKLFDKVQMRKPSSSRDRSREQYLLAR 202 G D+L K F I + + + R D L+ R Sbjct: 96 KGAYDYLPKPFD---LTELIGIIGRALAEPKRRPSKLEDDSQDGMPLVGR 142
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 133 bits (336), Expect = 2e-36 Identities = 82/389 (21%), Positives = 145/389 (37%), Gaps = 86/389 (22%) Query: 5 IGIDLGTTNSCVSILENGNVKVIENAEGTRTTPSIIAYANDGE------ILVGQSAKRQA 58 + IDLGT N+ + + G V + E PS++A D VG AK+ Sbjct: 13 LSIDLGTANTLIYVKGQGIV-LNE--------PSVVAIRQDRAGSPKSVAAVGHDAKQML 63 Query: 59 VTNPHNTLYAVKRLIGRKFEEDVVQKDIQMVPYKIVKADNGDAWVEVNGQKMAPPQISAE 118 P N + A++ + +D V D + +KM Sbjct: 64 GRTPGN-IAAIRPM------KDGVIADFFVT------------------EKM-----LQH 93 Query: 119 ILKKMKKTAEDYLGEAVTEAVITVPAYFNDSQRQATKDAGRIAGLDVKRIINEPTAAALA 178 +K++ + ++ VP +R+A +++ + AG +I EP AAA+ Sbjct: 94 FIKQVHS---NSFMRPSPRVLVCVPVGATQVERRAIRESAQGAGAREVFLIEEPMAAAIG 150 Query: 179 YGMDKAKGDHTVIVYDLGGGTFDVSVIEIAEVDGEHQFEVLATNGDTFLGGEDFDIRLID 238 G+ ++ +++V D+GGGT +V+VI + V + +GG+ FD +I+ Sbjct: 151 AGLPVSEATGSMVV-DIGGGTTEVAVISLNGV---------VYSSSVRIGGDRFDEAIIN 200 Query: 239 YFVDEFKKESGMNLKGDPLAMQRLKEAAEKAKIELSSSTQ----TEVNLPYITADATGPK 294 Y + G + AE+ K E+ S+ E+ + P+ Sbjct: 201 YVRRNYGSLIG-------------EATAERIKHEIGSAYPGDEVREIEVRGRNLAEGVPR 247 Query: 295 HLVVKISRSKLESLVE------DLVQRTIAPCEMALKDAGIDRSKINDVILVGGQTRMPL 348 + S LE+L E V + C L +R ++L GG + Sbjct: 248 GFTLN-SNEILEALQEPLTGIVSAVMVALEQCPPELASDISERG----MVLTGGGALLRN 302 Query: 349 VQKLVTEFFGKEARKDVNPDEAVAMGAAI 377 + +L+ E G +P VA G Sbjct: 303 LDRLLMEETGIPVVVAEDPLTCVARGGGK 331
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 36.2 bits (83), Expect = 4e-04 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 2/77 (2%) Query: 228 RQVVEQCSESDSGNVLNALTASLHRLGSVDHSPSALSEATGLLSSAQIQVEEAVGELNRF 287 R +++ S ++ LN T +L+ + S++H S L T LS+A I V R Sbjct: 926 RTMIDATSANEITKQLNTATTTLNNIASLEHKTSGLQ--TLSLSNAMILNSRLVNLSRRH 983 Query: 288 LDHFDADPARLQQLEER 304 +H D+ RLQ L+++ Sbjct: 984 TNHIDSFAKRLQALKDQ 1000
>SSPAMPROTEIN#Salmonella surface presentation of antigen gene type M signature. Length = 147 Score = 32.7 bits (74), Expect = 0.007 Identities = 19/74 (25%), Positives = 42/74 (56%), Gaps = 2/74 (2%) Query: 2157 GISISAENLMMDSSRISQEEIYRRRREEWEIQRNNAEGEIQ--QIEAQLASLEVRRESTE 2214 G+ + + L ++ ++S+EEIY R++ ++R + E+Q QI+ + + LE +RE + Sbjct: 48 GLKLLLDTLRAENRQLSREEIYALLRKQSIVRRQIKDLELQIIQIQEKRSELEKKREEFQ 107 Query: 2215 LQKAHLEMQQGQAQ 2228 + + ++G Q Sbjct: 108 EKSKYWLRKEGNYQ 121
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 38.4 bits (89), Expect = 2e-06 Identities = 16/112 (14%), Positives = 42/112 (37%), Gaps = 3/112 (2%) Query: 17 ELMRSTPGISLRDADSREATARYLERNPGMSFVAEADGTLCGCVMCGHD-GRRGYLQHLI 75 E S P + + + Y+E +F+ + G + + ++ + Sbjct: 39 EERFSKP--YFKQYEDDDMDVSYVEEEGKAAFLYYLENNCIGRIKIRSNWNGYALIEDIA 96 Query: 76 VLPEYRRRGIAHELVERCLECLEALGIYKCHLDVMKSNEAAGRYWQGQGWTL 127 V +YR++G+ L+ + +E + L+ N +A ++ + + Sbjct: 97 VAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFII 148
>PERTACTIN#Pertactin signature. Length = 922 Score = 29.3 bits (65), Expect = 0.014 Identities = 26/77 (33%), Positives = 32/77 (41%), Gaps = 3/77 (3%) Query: 99 SIFGSSAPRASQPQPS---QPSSGGWRDGGGFNPAPAPAAPQGGYAAPAPAAGSGFLGGA 155 S+ G+ AP A +P P QP + P P PQ APAP +G A Sbjct: 561 SLVGAKAPPAPKPAPQPGPQPGPQPPQPPQPPQPPQPPQPPQRQPEAPAPQPPAGRELSA 620 Query: 156 LKTAAGVAGGVLLAEGI 172 AA GGV LA + Sbjct: 621 AANAAVNTGGVGLASTL 637
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 31.6 bits (71), Expect = 0.049 Identities = 33/175 (18%), Positives = 63/175 (36%), Gaps = 23/175 (13%) Query: 1122 EQPVFWITGGLGGIGQLISRQLAADFPGCTLYLTGRKTAAEQQAVFSALKSEIQARGGKI 1181 E + +ITG GIG+ ++R LA+ ++ E+ + S ++A Sbjct: 7 EGKIAFITGAAQGIGEAVARTLAS----QGAHIAAVDYNPEKLEK---VVSSLKAEARHA 59 Query: 1182 DYQPLDITDVVEVENFVAALKNTHHSVDVIFHAAGHIADNFILRKEVKDSLP------VL 1235 + P D+ D ++ A ++ +D++ + AG +LR + SL Sbjct: 60 EAFPADVRDSAAIDEITARIEREMGPIDILVNVAG------VLRPGLIHSLSDEEWEATF 113 Query: 1236 SPKLDGTLAIDQAI----KRLPLGKFVLFSSVASTFGNAGQCDYAAANAFLDAFA 1286 S G +++ G V S + YA++ A F Sbjct: 114 SVNSTGVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFT 168
>PF07299#Fibronectin-binding protein (FBP) Length = 219 Score = 29.4 bits (66), Expect = 0.032 Identities = 19/95 (20%), Positives = 39/95 (41%), Gaps = 4/95 (4%) Query: 352 KHVRSTGIKAILSGEGADEVFLGYNIFKETLLRSQWDTTDHDEKKRLLAKLYPYMKSFSE 411 + V +K+ L+ E VF ++ L+ + + ++ + L K+ PY+ F E Sbjct: 36 RGVIQA-LKS-LAIEKIIHVFENLTDEQKELIDTVLTVQNREDAESFLLKINPYVIPFQE 93 Query: 412 DNDSNLMGFYNAYAKEKIPGLFSHEIRFQNGRFAS 446 L + K K+P + E+ + + S Sbjct: 94 VTAQTLKKLFPKAKKLKLPDM--EELDMKELSYLS 126
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 30.0 bits (67), Expect = 7e-04 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%) Query: 14 LFEFDEDITEQDDLIKLGLIDSVGYIQLISFLKKEFG-IVFTQ 55 L E EDIT+Q+DL+ GL DSV + L+ ++E + F + Sbjct: 243 LQETPEDITDQEDLLDRGL-DSVRIMTLVEQWRREGAEVTFVE 284
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 33.7 bits (77), Expect = 0.001 Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 3/101 (2%) Query: 52 LFLVLATYPASRLMSRIGRKKAFMFGAIPLVASGLSGFWAVEHQHFPMLMFSHSALGV-Y 110 L + T +L ++G K+ +FG I + GF V H F +L+ + G Sbjct: 60 LTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGF--VGHSFFSLLIMARFIQGAGA 117 Query: 111 IAFANFNRFAATDNLDQKLKPKAISLVVAGGVIAAVVGPTL 151 AF + ++ + KA L+ + + VGP + Sbjct: 118 AAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAI 158
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 81.8 bits (202), Expect = 3e-21 Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 3/106 (2%) Query: 7 RQQLLLVDDEEDANEELAELLEGEGFCCFTASSVKMALQQLTRHPDIALVITDLRMPEES 66 +L+ DD+ L + L G+ S+ + + LV+TD+ MP+E+ Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGD-GDLVVTDVVMPDEN 61 Query: 67 GIQLIRHLRDHTSRQHLPVIVTSGHADMDDVSDLLRLHVLDLFRKP 112 L+ ++ R LPV+V S D KP Sbjct: 62 AFDLLPRIKKA--RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKP 105
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 145 bits (366), Expect = 5e-40 Identities = 69/253 (27%), Positives = 115/253 (45%), Gaps = 12/253 (4%) Query: 131 PSQVQTDIRFIEVSRTKLKEASTSIFGKGSSNFLFGAPG-----TVPGVNVTPGAVGGIT 185 QV + EV K + F G + G N G ++ Sbjct: 344 RPQVLVEAIIAEVQDADGLNLGIQWANKNAGMTQFTNSGLPISTAIAGANQYN-KDGTVS 402 Query: 186 PSIPLNNSNFNIVWGGGSSKVLGM-INAMENSGYAYTLARPSLVALNGQSASFLAGGEFP 244 S+ S+FN + G M + A+ +S LA PS+V L+ A+F G E P Sbjct: 403 SSLASALSSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMEATFNVGQEVP 462 Query: 245 VPVPNGEGNG----ISIEYKEFGVRLTLTPTVVGRDRILLKVAPEVSELDFSAGITIAGT 300 V + +G ++E K G++L + P + D +LL++ EVS + +A + + Sbjct: 463 VLTGSQTTSGDNIFNTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAAS-STSSD 521 Query: 301 TVPALNIRRTDTSIALADGESFVVSGLISSSNSGSVDKFPGLGDIPILGAFFRSSQIQRD 360 N R + ++ + GE+ VV GL+ S S + DK P LGDIP++GA FRS+ + Sbjct: 522 LGATFNTRTVNNAVLVGSGETVVVGGLLDKSVSDTADKVPLLGDIPVIGALFRSTSKKVS 581 Query: 361 ERELLMIVTPHLV 373 +R L++ + P ++ Sbjct: 582 KRNLMLFIRPTVI 594
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 32.5 bits (74), Expect = 0.003 Identities = 19/106 (17%), Positives = 36/106 (33%), Gaps = 2/106 (1%) Query: 22 LQSALGSLGQVVSAGTGSLDDLLALVDVTFASVVFVGLDREHLMTQSALIESALEAKPML 81 L AL G V T + L + +V + L+ +A+P L Sbjct: 19 LNQALSRAGYDVRI-TSNAATLWRWIAAGDGDLVVTDV-VMPDENAFDLLPRIKKARPDL 76 Query: 82 AIVALGDGMDNQLVLNAMRAGARDFVAYGSRSSEVAGLVRRLSKRL 127 ++ + + A GA D++ +E+ G++ R Sbjct: 77 PVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 55.4 bits (133), Expect = 1e-11 Identities = 32/146 (21%), Positives = 52/146 (35%), Gaps = 7/146 (4%) Query: 3 PRAEQKQQTRRALLDAAHQLMESGRGFGSLSLREVARTAGIVPTGFYRHFEDMDQLGLAL 62 ++ Q+TR+ +LD A +L +G S SL E+A+ AG+ Y HF+D L + Sbjct: 4 KTKQEAQETRQHILDVALRLFSQ-QGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI 62 Query: 63 VSEVGQTFRETIRLVRHNEFAMG-GLIRASVKIFLERVAANRSQFLFLA-----REQYGG 116 E + ++R + LE + L + E G Sbjct: 63 WELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGE 122 Query: 117 SLKVRQALGALREGISADLTADLAKM 142 V+QA L + L Sbjct: 123 MAVVQQAQRNLCLESYDRIEQTLKHC 148
>PERTACTIN#Pertactin signature. Length = 922 Score = 27.8 bits (61), Expect = 0.018 Identities = 26/88 (29%), Positives = 32/88 (36%), Gaps = 1/88 (1%) Query: 24 PKPAAPPPVAPSIKLPAGPGPLQPYQRELSGQLLGVPAGAEVELAMLVIDERGRPQKLLT 83 P P P + P P P QP QR+ PAG E+ A G T Sbjct: 577 PGPQPGPQPPQPPQPPQPPQPPQPPQRQPEAPAPQPPAGRELSAAANAAVNTGGVGLAST 636 Query: 84 NTLLKGNGQSLPF-QLRFNPEAFPVGGR 110 + N S +LR NP+A GR Sbjct: 637 LWYAESNALSKRLGELRLNPDAGGAWGR 664
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 70.0 bits (171), Expect = 1e-16 Identities = 37/190 (19%), Positives = 61/190 (32%), Gaps = 8/190 (4%) Query: 47 SPPALAPQVTRTIYASVINEPTPAPAASAAPTPPPPVAPVVPAPASVAVQPVARHKPVAK 106 +P L P + EP P P P PV P P + K Sbjct: 56 APADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPK 115 Query: 107 PQVMQRPVVAAATSAPATISTAAAAPVVAQTPAPPPQPKTLTRGVEYVHEPQPDYPDSAR 166 V A+ + ++ A T P + R + QP YP A+ Sbjct: 116 RDVKPVESRPASPFENTAPARPTSSTATAATSKPVTSVASGPR---ALSRNQPQYPARAQ 172 Query: 167 EEGHEGTVILRVLVDEHGKPGAVDIVRSSGFGNLDEAGRTAVRGALFKPHLEEGHAVSVY 226 EG V ++ V G+ V I+ + + + A+R ++P V Sbjct: 173 ALRIEGQVKVKFDVTPDGRVDNVQILSAKPANMFEREVKNAMRRWRYEPGKPGSGIV--- 229 Query: 227 VIVPLRFQLD 236 V + F+++ Sbjct: 230 --VNILFKIN 237
>MALTOSEBP#Maltose binding protein signature. Length = 396 Score = 37.8 bits (87), Expect = 7e-05 Identities = 70/314 (22%), Positives = 113/314 (35%), Gaps = 42/314 (13%) Query: 116 PDDTFLPALRRYYADD---HGTLAAQPFAASTAVLYTHRKALAAAGISEPPATWEAFADA 172 PD F L + D +G L A P A L ++ L PP TWE Sbjct: 107 PDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLP-----NPPKTWEEIPAL 161 Query: 173 LRALKKNGQQC------------PLVSAFAPWIWLEQTSAAQGTDVAIRSAGGDRYQFDE 220 + LK G+ PL++A + + + DV + +AG Sbjct: 162 DKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAK------ 215 Query: 221 GPHLRLMKDLAQWTSQGLVVHEDATRSGQQALAFATDDCAMLLDSTGAWNVVHSTLKSDI 280 L + DL + ++ D S +A AF + AM ++ AW+ + ++ K + Sbjct: 216 -AGLTFLVDLIKNKH----MNADTDYSIAEA-AFNKGETAMTINGPWAWSNIDTS-KVNY 268 Query: 281 QVTALPIYAATQRRANVPGGSSLWVMRGHSVRDYRLVSEFLAFVLQPDNQLIFSARTGYL 340 VT LP + + P L + + L EFL L D L A Sbjct: 269 GVTVLPTFKGQPSK---PFVGVLSAGINAASPNKELAKEFLENYLLTDEGL--EAVNKDK 323 Query: 341 PVTQAAAARLQSAASEPSAITVGLTALDDIDGQPSAPLRCGFITLMRLIWSQEMENALAG 400 P+ A + ++ I + + P+ P F +R + NA +G Sbjct: 324 PLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVR----TAVINAASG 379 Query: 401 RQSIDLALRQTTLR 414 RQ++D AL+ R Sbjct: 380 RQTVDEALKDAQTR 393
>SECA#SecA protein signature. Length = 901 Score = 44.1 bits (104), Expect = 8e-07 Identities = 15/18 (83%), Positives = 16/18 (88%) Query: 15 GRNDPCWCGSGLKYKRCH 32 GRNDPC CGSG KYK+CH Sbjct: 880 GRNDPCPCGSGKKYKQCH 897
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 73.7 bits (181), Expect = 3e-16 Identities = 74/353 (20%), Positives = 134/353 (37%), Gaps = 23/353 (6%) Query: 29 LGMFMVLPVLATYGMDL--AGASPALIGLAIGAYGLTQAVLQIPFGIISDRIGRRPVIYF 86 +G+ +++PVL DL + A G+ + Y L Q G +SDR GRRPV+ Sbjct: 19 VGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLV 78 Query: 87 GLIIFAIGSVVAANADSIWGIIAGRILQG-AGAISAAVMALLSDLTREQHRTKAMAMIGM 145 L A+ + A A +W + GRI+ G GA A A ++D+T R + + Sbjct: 79 SLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADITDGDERARHFGFMSA 138 Query: 146 TIGLSFAIAMVVGPVITGMFGLSGL---FLATGGMALIGVLIVAYVVPKASGALMHRESG 202 G MV GPV+ G+ G F A + + L +++P++ Sbjct: 139 CFG----FGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRR 194 Query: 203 VAKQALGATLRHPDLLRLDLGIFVLHAMLMSSFVALPLALVEKAGLPKEEHW-------W 255 A L A+ R + + + + +M +P AL G + HW Sbjct: 195 EALNPL-ASFRWARGMTVVAALMAV-FFIMQLVGQVPAALWVIFGEDR-FHWDATTIGIS 251 Query: 256 VYLTALLVSFFAMIPFIIYGEKKRQMKRVLLGAVTVLMLAELFFWAYGDTLRALVIGTVV 315 + +L S + + + + ++LG + + A I +V Sbjct: 252 LAAFGILHSLAQAMITGPVAARLGERRALMLG-MIADGTGYILLAFATRGWMAFPI--MV 308 Query: 316 FFTAFNLLEASLPSLISKVSPAGGKGTAMGVYSTSQFLGSAAGGILGGWLFQH 368 + + +L +++S+ +G G + L S G +L ++ Sbjct: 309 LLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAA 361
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 36.4 bits (84), Expect = 1e-05 Identities = 19/101 (18%), Positives = 39/101 (38%), Gaps = 9/101 (8%) Query: 37 FSKLYERINHEMEEEAQHADALMRRILMLEGTP---------RMRPDDLDVGTTVPEMLA 87 F L+E+ + A+ D + R+L + G P D T+ EM+ Sbjct: 43 FFTLHEKFEELYDHAAETVDTIAERLLAIGGQPVATVKEYTEHASITDGGNETSASEMVQ 102 Query: 88 SDLRLEYKVRTALCKGIELCELHSDYVTREILRVQLADTEE 128 + + ++ + I L E + D T ++ + + E+ Sbjct: 103 ALVNDYKQISSESKFVIGLAEENQDNATADLFVGLIEEVEK 143
>SECYTRNLCASE#Preprotein translocase SecY subunit signature. Length = 437 Score = 440 bits (1133), Expect = e-155 Identities = 182/430 (42%), Positives = 261/430 (60%), Gaps = 20/430 (4%) Query: 16 SELWARLRFLFLAIIVYRIGAHIPVPGINPDRLAELFRQNEGT--ILSLFNMFSGGALER 73 +L +L F I+VYR+G HIP+PG++ + + R+ G + L NMFSGGAL + Sbjct: 12 PDLRKKLLFTLAIIVVYRVGTHIPIPGVDYKNVQQCVREASGNQGLFGLVNMFSGGALLQ 71 Query: 74 MSIFALGIMPYISASIIMQLMTAVSPQLEQLKKEGEAGRRKISQYTRYGTVVLALVQAIG 133 ++IFALGIMPYI+ASII+QL+T V P+LE LKKEG+AG KI+QYTRY TV LA++Q G Sbjct: 72 ITIFALGIMPYITASIILQLLTVVIPRLEALKKEGQAGTAKITQYTRYLTVALAILQGTG 131 Query: 134 MSVGLASQGVAFSGDLG----------FHFVAVTTFVAGAMFMMWLGEQITERGVGNGIS 183 + S + +G V AG +MWLGE IT+RG+GNG+S Sbjct: 132 LVATARSAPLFGRCSVGGQIVPDQSIFTTITMVICMTAGTCVVMWLGELITDRGIGNGMS 191 Query: 184 MLIFAGIVAGLPRAIGQSFESARQ--GDINIFALVAIGLLAVAIIGFVVFIERGQRRIAV 241 +L+F I A P A+ + G I ++A+GL+ VA+ VVF+E+ QRRI V Sbjct: 192 ILMFISIAATFPSALWAIKKQGTLAGGWIEFGTVIAVGLIMVAL---VVFVEQAQRRIPV 248 Query: 242 HYAKRQQGRKVFAAQTSHLPLKVNMAGVIPAIFASSILLFPASLGSWFGQSEGLGWLQDI 301 YAKR GR+ + ++++PLKVN AGVIP IFASS+L PA + + G + G + Sbjct: 249 QYAKRMIGRRSYGGTSTYIPLKVNQAGVIPVIFASSLLYIPALVAQFAGGNSGWKSWVEQ 308 Query: 302 SQSIAPGQPLNILLFSAGIIFFCFFYTALMFNPKDVAENLKKSGAFIPGIRPGEQSARYI 361 + + P+ I+ + I+FF FFY A+ FNP++VA+N+KK G FIPGIR G +A Y+ Sbjct: 309 NLTK-GDHPIYIVTYFLLIVFFAFFYVAISFNPEEVADNMKKYGGFIPGIRAGRPTAEYL 367 Query: 362 DGVLTRLTMFGALYMTAVCLLPQFLVVAANVP--FYLGGTSLLIVVVVVMDFMSQVQSHL 419 VL R+T G+LY+ + L+P +V F GGTS+LI+V V ++ + Q++S L Sbjct: 368 SYVLNRITWPGSLYLGLIALVPTMALVGFGASQNFPFGGTSILIIVGVGLETVKQIESQL 427 Query: 420 VSHQYESLMK 429 YE ++ Sbjct: 428 QQRNYEGFLR 437
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 28.2 bits (63), Expect = 0.020 Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 14/83 (16%) Query: 58 PAAIQKAMEAARRNMIQVDLNGTTLQYA------MKSAHGASKVYMQPASEGTGIIAGGA 111 PAAI + A +QV ++ TL + + + G + +EG G GG Sbjct: 228 PAAIDCCLSVADEYDVQVMIHTDTLNESGFVEDTIAAIKG--RTIHAYHTEGAG---GGH 282 Query: 112 MRAVLEVAGVQNVLAKCYGSTNP 134 ++ + G NV+ STNP Sbjct: 283 APDIIRICGQPNVIP---SSTNP 302
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 79.9 bits (197), Expect = 3e-18 Identities = 53/155 (34%), Positives = 80/155 (51%), Gaps = 17/155 (10%) Query: 13 VNVGTIGHVDHGKTTLTAALTRVCSEVFGSAAV----EFDK----IDSAPEEKARGITIN 64 +N+G + HVD GKTTLT +L ++ S A+ DK D+ E+ RGITI Sbjct: 4 INIGVLAHVDAGKTTLTESL------LYNSGAITELGSVDKGTTRTDNTLLERQRGITIQ 57 Query: 65 TAHVEYKSLIRHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAADGPMPQTREHILLSR 124 T ++ +D PGH D++ + + +DGAIL+ SA DG QTR R Sbjct: 58 TGITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALR 117 Query: 125 QVGVPYIVVFLNKADLVDDAELLELVEMEVRDLLS 159 ++G+P I F+NK D + L V ++++ LS Sbjct: 118 KMGIPTI-FFINKID--QNGIDLSTVYQDIKEKLS 149
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 582 bits (1501), Expect = 0.0 Identities = 167/684 (24%), Positives = 300/684 (43%), Gaps = 76/684 (11%) Query: 9 RYRNIGIVAHVDAGKTTTTERVLFYTGKSHKMGEVHDGAATTDWMVQEQERGITITSAAI 68 + NIG++AHVDAGKTT TE +L+ +G ++G V G TD + E++RGITI + Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 69 TAFWQGSEKQHKDQFRFNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVW 128 + W+ + + N+IDTPGH+DF EV RSL VLDGA+++ GV+ Q+ ++ Sbjct: 62 SFQWENT--------KVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILF 113 Query: 129 RQANKYGVPRIVYVNKMDRAGANFLRVIAQIKQRLGHTPVPIQLAIGAEDNFQGQIDLMS 188 K G+P I ++NK+D+ G + V IK++L V Q Sbjct: 114 HALRKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQ----------------- 156 Query: 189 MEAVYWNDADKGMVPVRKPIPAELQELADEWRSNMVEAAAEASEELMNKYVDGEELTNDE 248 V + + +++W + E +++L+ KY+ G+ L E Sbjct: 157 ------------KVELYPNMCVTNFTESEQW-----DTVIEGNDDLLEKYMSGKSLEALE 199 Query: 249 IKAALRQRTIAGEIVLAVCGSSFKNKGVPLVLDAVIDYLPAPTDIPAIKGSDPDNEEKLM 308 ++ R + GS+ N G+ +++ + + + T Sbjct: 200 LEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSSTH---------------- 243 Query: 309 ERHADDNEPFSALAFKIATDPFVGTLTFVRVYSGVLASGDGVINSVKGKKERVGRMVQMH 368 FKI L ++R+YSGVL D V S K K ++ M Sbjct: 244 ----RGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKI-KITEMYTSI 298 Query: 369 ANAREEIKEVRAGDIAALIG----MKDVTTGETLCNADKPIILVRMDFPEPVISVAVEPK 424 +I + +G+I L + V G+T + I + P P++ VEP Sbjct: 299 NGELCKIDKAYSGEIVILQNEFLKLNSVL-GDTKLLPQRERI----ENPLPLLQTTVEPS 353 Query: 425 TKDDQEKMGIALGKLAQEDPSFRVKTDEETGQTIISGMGELHLDILVDRMRREFNVEANI 484 +E + AL +++ DP R D T + I+S +G++ +++ ++ +++VE I Sbjct: 354 KPQQREMLLDALLEISDSDPLLRYYVDSATHEIILSFLGKVQMEVTCALLQEKYHVEIEI 413 Query: 485 GKPQVSYRERITKNCEIEGKFVRQSGGRGQFGHCWIRFAPADEGQEGLQFVNEVVGGVVP 544 +P V Y ER K E + + + +P G G+Q+ + V G + Sbjct: 414 KEPTVIYMERPLKK--AEYTIHIEVPPNPFWASIGLSVSPLPLG-SGMQYESSVSLGYLN 470 Query: 545 KEYIPAIQKGIEEQMKNGVVAGYPLIGLKATVFDGSYHDVDSNEMAFKVAASMATKQLAQ 604 + + A+ +GI + G+ G+ + K G Y+ S F++ A + +Q+ + Sbjct: 471 QSFQNAVMEGIRYGCEQGL-YGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQVLK 529 Query: 605 KGGGELLEPIMAVEVVTPEDYMGDVMGDLNRRRGMILGMEDTVSGKVIRAEVPLGEMFGY 664 K G ELLEP ++ ++ P++Y+ D + I+ + + ++ E+P + Y Sbjct: 530 KAGTELLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQLKNNEVILSGEIPARCIQEY 589 Query: 665 ATDVRSMSQGRASYSMEFKKYNTA 688 +D+ + GR+ E K Y+ Sbjct: 590 RSDLTFFTNGRSVCLTELKGYHVT 613
>SECETRNLCASE#Bacterial translocase SecE signature. Length = 127 Score = 124 bits (312), Expect = 4e-40 Identities = 63/121 (52%), Positives = 83/121 (68%) Query: 2 NPKAEASDSRFDMLKWLLVVVLVVVGVVGNQYYSAEPILYRVLALLVIAAAAAFVALQTG 61 N +A+ S + +KW++VV L++V +VGN Y + R LA++++ AAA VAL T Sbjct: 4 NTEAQGSGRGLEAMKWVVVVALLLVAIVGNYLYRDIMLPLRALAVVILIAAAGGVALLTT 63 Query: 62 KGKAFFVLAKEARAEIRKVVWPTRQETTQTTLIVVAVVLVMALLLWGLDSLLGWLVSLIV 121 KGKA A+EAR E+RKV+WPTRQET TTLIV AV VM+L+LWGLD +L LVS I Sbjct: 64 KGKATVAFAREARTEVRKVIWPTRQETLHTTLIVAAVTAVMSLILWGLDGILVRLVSFIT 123 Query: 122 G 122 G Sbjct: 124 G 124
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 31.2 bits (70), Expect = 0.018 Identities = 36/224 (16%), Positives = 67/224 (29%), Gaps = 9/224 (4%) Query: 18 GREQKYLTYAEVNDHL--PEDISDPE--QVEDIIRMINDMGIPVHESAPDADALMLADAD 73 GR Y E + +I+ P Q + N+ I + AP ++ Sbjct: 976 GRYDLYNPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSE 1035 Query: 74 TDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIEIAK--RIEEGIRE 131 T E AE + VE + T+ RE+ + + + + +E Sbjct: 1036 TTETVAENSKQESKTVEKNEQDATETTAQ-NREVAKEAKSNVKANTQTNEVAQSGSETKE 1094 Query: 132 VMGAIAHFPGTVD--HILSEYTRVTSEGGRLSDVLSGYIDPDDGIAPPAEVPPPVDPKAV 189 TV+ T T E +++ +S + + + P AE DP Sbjct: 1095 TQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVN 1154 Query: 190 KAEGADDDEEESADASDEEDEVESGPDPVIAQQRFGAVSDQMEI 233 E + ++ + PV + +E Sbjct: 1155 IKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVEN 1198
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 41.1 bits (96), Expect = 4e-07 Identities = 20/95 (21%), Positives = 36/95 (37%) Query: 50 DCDQWKQRASSKGTEFWLAFEEGRPVGMVGAAVSESEHFNLIGMWVEPAARGSGIAKELV 109 D D +G +L + E +G + + + + + + V R G+ L+ Sbjct: 52 DDDMDVSYVEEEGKAAFLYYLENNCIGRIKIRSNWNGYALIEDIAVAKDYRKKGVGTALL 111 Query: 110 DIVKARSTERGFDGVFLDVSPENVRASSFYLKQGF 144 + E F G+ L+ N+ A FY K F Sbjct: 112 HKAIEWAKENHFCGLMLETQDINISACHFYAKHHF 146
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 319 bits (817), Expect = e-102 Identities = 233/641 (36%), Positives = 310/641 (48%), Gaps = 77/641 (12%) Query: 23 PGPIPGGGVIAKPLPWDGKVPADAEIDKF--FSQQGIKGEQYTISVVATVATTQRNIEQA 80 PG G G IA+P+ + +F ++ G+ +Y V V +R IE Sbjct: 25 PGGGTGIGPIARPIEHGLDSSTENGWQEFESYADVGVDPRRY---VPLQVKEKRREIELQ 81 Query: 81 FTAYLPQLPADIDAEIAAA-------VGPNPLSALEKAKTEKSVVDNLITQNTAELANAN 133 F +L A + AE+ A PL + ++ T +V N + Q +L Sbjct: 82 FRDAEKKLEASVQAELDKADAALGPAKNLAPLDVINRSLT---IVGNALQQKNQKLLLNQ 138 Query: 134 AAASAFFGRNVL---AVEIKKSAVDFVNIFQSRQDRGTPLEVFKSWEASATAAYAAKIIE 190 ++ +N L A EI + AV NI + TAAY K+ Sbjct: 139 KKITSLGAKNFLTRTAEEIGEQAVREGNINGPE----AYMRFLDREMEGLTAAYNVKLFT 194 Query: 191 EKIRILTEKSAALLQTVATAQAEEDARIAAEAEAKRLADEAAAAEAKRLADEAAAAEAKR 250 E I ++ Q + AA+A + A A Sbjct: 195 EAI--------------SSLQIRMNTLTAAKA--------------------SIEAAAAN 220 Query: 251 LADEAAAAEAKRIAEEQARIAAEAVRTANTFRAPGPLSATAPVIMTAAGTIAVIEAATVT 310 A E AAAEAKR AEEQAR A+R ANT+ P S A G I V + A + Sbjct: 221 KAREQAAAEAKRKAEEQAR-QQAAIRAANTYAMPANGSVVATA--AGRGLIQVAQGAA-S 276 Query: 311 LQAAIRSAVAALTNLAAGTASGLLVGVSALVYS-------PKLANGELPERYAFNTPLSD 363 L AI A+A L + A S + VG ++L YS + RYA + Sbjct: 277 LAQAISDAIAVLGRVLASAPSVMAVGFASLTYSSRTAEQWQDQTPDSV--RYALGMDAAK 334 Query: 364 LTPELGKDLPAIAASGGTVDLPFRLSSKTAADGQSEVFVVKTDALTASSKVRVVSAVLDV 423 L +L A+A + GTVDLP RL+++ A + + VV TD ++ V V A + Sbjct: 335 LGLPPSVNLNAVAKASGTVDLPMRLTNE-ARGNTTTLSVVSTDGVSVPKAVPVRMAAYNA 393 Query: 424 EQNTYSVT----TGDVPPRILTWTPIVSPG--NSSTTSPAEQPAPPVYTGAAVTPVEGRI 477 Y VT T + PP ILTWTP PG N S+T+P PVY GA +TPV+ Sbjct: 394 TTGLYEVTVPSTTAEAPPLILTWTPASPPGNQNPSSTTPVVPKPVPVYEGATLTPVKATP 453 Query: 478 DAFPAVSEASFDDFITVFPADSGLPPIYTMFRDRREDPGVATGVGQPVSGIWLGAASQGE 537 + +P V +D I FPADSG+ PIY MFRD R+ PG ATG GQPVSG WLGAASQGE Sbjct: 454 ETYPGVITLP-EDLIIGFPADSGIKPIYVMFRDPRDVPGAATGKGQPVSGNWLGAASQGE 512 Query: 538 GAPIPSQIADQLRGKEFKNFRDFRKAFWLAVGADLELSKQFKGSNNTLIKGGTAPFAIPS 597 GAPIPSQIAD+LRGK FKN+RDFR+ FW+AV D ELSKQF + +++ G AP+ S Sbjct: 513 GAPIPSQIADKLRGKTFKNWRDFREQFWIAVANDPELSKQFNPGSLAVMRDGGAPYVRES 572 Query: 598 EQVGGRGQFEIHHVIPVHPAGAVYDVENMRIMTPKLHIQTH 638 EQ GGR + EIHH + V G VY++ N+ +TPK HI+ H Sbjct: 573 EQAGGRIKIEIHHKVRVADGGGVYNMGNLVAVTPKRHIEIH 613
>NEISSPPORIN#Neisseria sp. porin signature. Length = 348 Score = 27.6 bits (61), Expect = 0.025 Identities = 15/25 (60%), Positives = 17/25 (68%), Gaps = 1/25 (4%) Query: 1 MKPILALLSLLALPVMA-AEPTLYG 24 MK L L+L ALPV A A+ TLYG Sbjct: 1 MKKSLIALTLAALPVAAMADVTLYG 25
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 51.2 bits (122), Expect = 3e-10 Identities = 35/183 (19%), Positives = 68/183 (37%), Gaps = 12/183 (6%) Query: 10 RRQQLIQATLTAVDQVGMGDASIALIARLAGVSNGIISHYFQDKNGLIAATMRHLMNALI 69 RQ ++ L Q G+ S+ IA+ AGV+ G I +F+DK+ L + + + Sbjct: 12 TRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIG 71 Query: 70 QNVRERRQALTEDSPRAHLQVIIEGNFDASQVSGPAMKTWLAFWATSMHH----PSLHRL 125 + E + D P + L+ I+ +++ V+ + + + + Sbjct: 72 ELELEYQAKFPGD-PLSVLREILIHVLEST-VTEERRRLLMEIIFHKCEFVGEMAVVQQA 129 Query: 126 QRINDHRLYSNLCCQFRRTL------PLEQARSAARGLAALIDGLWLRGALSGDAFDTEQ 179 QR Y + + + R AA + I GL + +FD ++ Sbjct: 130 QRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQSFDLKK 189 Query: 180 AQR 182 R Sbjct: 190 EAR 192
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 30.8 bits (69), Expect = 0.013 Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 2/78 (2%) Query: 287 DVSSSDLPLMDGRWGDDLFNPETLKLMGVRVGGGVAAGAAA--GAGVDLMVGGVTLGAAA 344 D + + +P + L L G + GG AAG AA GA V L + G A Sbjct: 205 DTNVTAVPASGAPAAVSVLGASELTLDGGHITGGRAAGVAAMQGAVVHLQRATIRRGDAP 264 Query: 345 LVGAIAGGALSTARSYGG 362 GA+ GGA+ GG Sbjct: 265 AGGAVPGGAVPGGAVPGG 282
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 61.2 bits (148), Expect = 1e-13 Identities = 30/164 (18%), Positives = 57/164 (34%), Gaps = 6/164 (3%) Query: 17 PRKPQARSQARIDSILDAARTLLAEQGVASLSIYSVAERAGIPPSSVYHFFASVPALLEA 76 RK + +Q ILD A L ++QGV+S S+ +A+ AG+ ++Y F L Sbjct: 2 ARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61 Query: 77 LTADIHAAFRASLQAPIDHDQLTTWRDLSRIVELRMLAIYNADAAARQLILAQH------ 130 + + L I+ + + + + + H Sbjct: 62 IWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVG 121 Query: 131 GLTEINQADRQHDIELGHLMLEVFDRHFQLPALPDDVDVFALAM 174 + + QA R +E + + + LP D+ A+ Sbjct: 122 EMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAI 165
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 111 bits (279), Expect = 6e-32 Identities = 70/254 (27%), Positives = 114/254 (44%), Gaps = 9/254 (3%) Query: 4 LQGKRTLIIGGTSGIGLETAKQFLAEGARVIVTGVNPE---SMANAQAILGSDVLVLRAD 60 ++GK I G GIG A+ ++GA + NPE + ++ AD Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 61 SASVAAQKELAQAVQSHYGQLDIAFLNAGVSVWKPIEEWNEEMFDRSFDINVKGPYFLLQ 120 AA E+ ++ G +DI AGV I ++E ++ +F +N G + + Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 121 ALLPVFSNPASVVLNTSISAHLGAPRSSI--YAATKAAFLSMSKTLSSELLPRGVRVNAV 178 ++ + S + T S G PR+S+ YA++KAA + +K L EL +R N V Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 179 SPGPIDTPLYDKAGIPDAYREQVNKDIAAT----IPFGRFGTPEEVAKAVVYLASDESRW 234 SPG +T + + EQV K T IP + P ++A AV++L S ++ Sbjct: 186 SPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGH 245 Query: 235 TLGTEIIVDGGRSL 248 + VDGG +L Sbjct: 246 ITMHNLCVDGGATL 259
>SECYTRNLCASE#Preprotein translocase SecY subunit signature. Length = 437 Score = 27.0 bits (60), Expect = 0.028 Identities = 17/77 (22%), Positives = 23/77 (29%), Gaps = 22/77 (28%) Query: 29 GPSAPGFRPALKQLPFLKKV--KINF-------------NFFAFFFGPVYLFILGLWKKN 73 G PG R +L V +I + FG F G Sbjct: 351 GGFIPGIRAGRPTAEYLSYVLNRITWPGSLYLGLIALVPTMALVGFGASQNFPFG----- 405 Query: 74 LCIIAIMIVVSVALNIV 90 +I+I+V V L V Sbjct: 406 --GTSILIIVGVGLETV 420
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 28.0 bits (62), Expect = 0.023 Identities = 17/40 (42%), Positives = 18/40 (45%), Gaps = 3/40 (7%) Query: 28 APVVEAVPEPEPEPITPLQDVPSS--FNFGGFNLAFPEGA 65 APVV P P PE T + S FNF L PEG Sbjct: 197 APVVAPAPAPAPEVQTKHFTLKSDVLFNFNKATLK-PEGQ 235
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 48.3 bits (114), Expect = 5e-08 Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 11/87 (12%) Query: 372 WSTARKNYWKAEAKNP--TQTYSPANMARMTKGQAPRMKVEVINRKTGKPEIKDVSMELH 429 W R+ +W A A +P ++ ++P ++A M G AP ++ + G +E+H Sbjct: 532 WRDFREQFWIAVANDPELSKQFNPGSLAVMRDGGAPYVRES---EQAGGRI----KIEIH 584 Query: 430 HRDIPQRVGGDGVHQAGNLDALTPWAH 456 H + GG GV+ GNL A+TP H Sbjct: 585 H-KVRVADGG-GVYNMGNLVAVTPKRH 609
>STREPKINASE#Streptococcus streptokinase protein signature. Length = 440 Score = 26.6 bits (58), Expect = 0.021 Identities = 11/26 (42%), Positives = 15/26 (57%) Query: 39 IDFTSDTTTSIRDSKVVLQAKDDAAS 64 IDF SD T + R+ KV KD + + Sbjct: 127 IDFASDATITDRNGKVYFADKDGSVT 152
>MALTOSEBP#Maltose binding protein signature. Length = 396 Score = 29.3 bits (65), Expect = 0.033 Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 12/112 (10%) Query: 101 AYAALRAMPKLGNMPALAN---NKVKLLINGEETFGAIFQAIREAKKTILVQFFIIHDDK 157 A +AL M + + ALA K+ + ING++ + + + ++ +K ++ + H DK Sbjct: 11 ALSALTTM--MFSASALAKIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDK 68 Query: 158 LGRELQSLLLEKAAEGVA---IFVLYDRIGSHALPGAYIDKLRDGGVQIKAF 206 L + + AA G IF +DR G +A G + D Q K + Sbjct: 69 LEEKFPQV----AATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLY 116
>OMADHESIN#Yersinia outer membrane adhesin signature. Length = 455 Score = 29.1 bits (64), Expect = 0.032 Identities = 38/151 (25%), Positives = 65/151 (43%), Gaps = 9/151 (5%) Query: 167 VNRSAVALTAA-RDLDTILVARPELIGADSQAAERRERLRGDLVRGINQRLAELKATGMG 225 +NR L A +D D + VA +L + E + +L+ N ++ +G Sbjct: 192 LNRQLTHLAAGTKDTDAVNVA--QLKKEIEKTQENTNKRSAELLANANAYADNKSSSVLG 249 Query: 226 IGVEVARVDVQSSLPTSAVNAF---NAVLTASQQADQAVANARTDAEKLTQTANQQADRT 282 I +L + AF VL ++ +VA RT E + AN A T Sbjct: 250 IANNYTDSKSAETLENARKEAFAQSKDVLNMAKAHSNSVA--RTTLETAEEHANSVARTT 307 Query: 283 LQVAHAQASERLAKAQAATATVVSLTQSAET 313 L+ A A+++ A+A A+A V + ++S+ T Sbjct: 308 LETAEEHANKKSAEA-LASANVYADSKSSHT 337
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 32.2 bits (73), Expect = 0.008 Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 9/90 (10%) Query: 351 VGGALVSATGGAVSPLRPVSVSDK---ARFIQDYADRQHNL-YEPYWLKCDAFSALTQRG 406 G + SA A+SPL +S++DK A I++Y+ R L Y+ D+ A + Sbjct: 306 AAGLIASAVTLAISPLSFLSIADKFKRANKIEEYSQRFKKLGYDG-----DSLLAAFHKE 360 Query: 407 QSGIDEACTRKQGVGGVFLWGDSHAQALSL 436 ID + T V G S A SL Sbjct: 361 TGAIDASLTTISTVLASVSSGISAAATTSL 390
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 105 bits (264), Expect = 8e-29 Identities = 35/173 (20%), Positives = 74/173 (42%), Gaps = 10/173 (5%) Query: 13 PIIYVLDDDLSVRSSLEDLLASVGLRSMLFGSTREFLDTPRPDAPGCLILDIRMPGMSGL 72 I V DDD ++R+ L L+ G + + ++ D+ MP + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 73 DFQEHMARSGISLPVIFITGHGDIPMSVRAMKAGAVEFLTKPFRDQDLLDAIQQGLAQDR 132 D + ++ LPV+ ++ +++A + GA ++L KPF +L+ I + LA+ + Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 133 SRRQSAAVEAELRRRHASLNLGEQQVMELVVSGLLNKQIAARLNVSEITVKVR 185 R + E + +G M+ + ++ ARL +++T+ + Sbjct: 124 RRPS----KLEDDSQDGMPLVGRSAAMQEIY------RVLARLMQTDLTLMIT 166
>PF06580#Sensor histidine kinase Length = 349 Score = 34.1 bits (78), Expect = 7e-04 Identities = 41/283 (14%), Positives = 101/283 (35%), Gaps = 50/283 (17%) Query: 44 IVVVLLAVRFLPATGVIAMALLCMVLTVISYEMTTSRGSEASGLINCIISLAAIAMTTWL 103 I+ VL A + +A + +L I+ + A +I ++ + + + Sbjct: 77 ILRVLPACVVIGMVWFVANTSIWRLLAFINTKPVAFTLPLALSIIFNVVVVTFMWSLLYF 136 Query: 104 ALRMALAIRSVHEARSQLARIARVNQLGELTASI-AHEVNQPLSAIVTSGNACQRWLATE 162 + + ++A +A+ QL L A I H + L+ I R L Sbjct: 137 GWHFFKNYKQAEIDQWKMASMAQEAQLMALKAQINPHFMFNALNNI--------RAL--- 185 Query: 163 PVNLDKARQAVERMISDANRAGDIIVRVRALAKRS--STHKEWISVADTVAEIVALAHSE 220 ++ D +A +++ + L + S ++ +S+AD + + ++ + Sbjct: 186 -------------ILEDPTKAREMLTSLSELMRYSLRYSNARQVSLADELTVV--DSYLQ 230 Query: 221 IE----GQGVALLVDVPEGLPPLLADRVQIQQVLLNLMLNGVDAMKKLKAEQAQLEVRVG 276 + + + + + + +Q ++ N + +G+ + + ++ ++ G Sbjct: 231 LASIQFEDRLQFENQINPAIMDVQVPPMLVQTLVENGIKHGIAQLP----QGGKILLK-G 285 Query: 277 LQDGGDIGFAVSDNGIGVLPENIHQLFDAFYTTKEEGMGIGLA 319 +D G + V + G L +E G GL Sbjct: 286 TKDNGTVTLEVENTGSLALKNT------------KESTGTGLQ 316
>BACINVASINB#Salmonella/Shigella invasin protein B signature. Length = 593 Score = 32.8 bits (74), Expect = 0.005 Identities = 34/162 (20%), Positives = 64/162 (39%), Gaps = 16/162 (9%) Query: 73 ETAAQNMQSKLDVFKAQQQS---LLVSFNNPVNLKPLRELADVTRDYEASLNSMRAVYQA 129 + + ++S+L V++A +S + + + L E + T YEAS+ A Sbjct: 98 DVSLSQLESRLAVWQAMIESQKEMGIQVSKEFQ-TALGEAQEATDLYEASIKKTD---TA 153 Query: 130 GAKVRNEMTANGTAAMQAVESLNNAVLQIDPADPARFDLAQLANSARQDLVLVRYEVRGY 189 + AA + + N + +DPADP + A+ A E Sbjct: 154 KSVYD--------AATKKLTQAQNKLQSLDPADP-GYAQAEAAVEQAGKEATEAKEALDK 204 Query: 190 TGNPNDKTETAAFQQLDSAISHLDRFKAAFGPANREQIAQFE 231 + K T A + + A + L +F+ A++ Q++Q E Sbjct: 205 ATDATVKAGTDAKAKAEKADNILTKFQGTANAASQNQVSQGE 246
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 31.7 bits (72), Expect = 0.004 Identities = 48/205 (23%), Positives = 79/205 (38%), Gaps = 44/205 (21%) Query: 151 VEVREAALALAGLTARVVDVEAYALERSFGLLAAQLGNG---HDELTVAVVDIGATMTTL 207 VE R + G AR V + +E +AA +G G + VVDIG T + Sbjct: 121 VERRAIRESAQGAGAREV----FLIEEP---MAAAIGAGLPVSEATGSMVVDIGGGTTEV 173 Query: 208 SVLHHGRIIYTREQLFGGRQLTDEI----QRRYGLSMEE--AGLAKKQGG--LPDDYVSE 259 +V+ ++Y+ GG + + I +R YG + E A K + G P D V E Sbjct: 174 AVISLNGVVYSSSVRIGGDRFDEAIINYVRRNYGSLIGEATAERIKHEIGSAYPGDEVRE 233 Query: 260 VLDPFK------------------EALVQQVSRSLQFFFAAGQYNSVDH--------IML 293 + + EAL + ++ + A + + ++L Sbjct: 234 IEVRGRNLAEGVPRGFTLNSNEILEALQEPLTGIVSAVMVALEQCPPELASDISERGMVL 293 Query: 294 AGGTASISGLEHLIQRRIGTPTMVA 318 GG A + L+ L+ G P +VA Sbjct: 294 TGGGALLRNLDRLLMEETGIPVVVA 318
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 278 bits (713), Expect = 4e-86 Identities = 107/405 (26%), Positives = 182/405 (44%), Gaps = 40/405 (9%) Query: 344 VPWDQALDLVLKTKGLDKRKVGNVLLVAPADEIAARERQELESL--------KQIAELAP 395 + W A D+V L+K + L + + A ER + + IA + Sbjct: 199 LSWASAADVVKLVTELNKDTSKSALPGSMVANVVADERTNAVLVSGEPNSRQRIIAMIKQ 258 Query: 396 LRRE--------LLQVNYAKAADIAKLFQSVTS---AESKA-------DERGSITVDDRT 437 L R+ ++ + YAKA+D+ ++ ++S +E +A D+ I +T Sbjct: 259 LDRQQATQGNTKVIYLKYAKASDLVEVLTGISSTMQSEKQAAKPVAALDKNIIIKAHGQT 318 Query: 438 NNIIAYQTQERLDELRRIVSQLDIPVRQVMIEARIVEANVDYNKQLGVRWGGSTNTSGSG 497 N +I + +++L R+++QLDI QV++EA I E LG++W +G Sbjct: 319 NALIVTAAPDVMNDLERVIAQLDIRRPQVLVEAIIAEVQDADGLNLGIQWANKN--AGMT 376 Query: 498 KWTTYGLDNNGDEAGNTSGNLTPNVPFVDLGAAGATSGIGLGFVTNNTLLDLELSAMEKT 557 ++T GL + AG N V A + +GI GF N + L+A+ + Sbjct: 377 QFTNSGLPISTAIAGANQYNKDGTVSSSLASALSSFNGIAAGFYQGN--WAMLLTALSSS 434 Query: 558 GNGEIVSQPKVVTSDKETAKILKGTEIPYQESSSSG-----ATTVSFKEASLSLEVTPQI 612 +I++ P +VT D A G E+P S + TV K + L+V PQI Sbjct: 435 TKNDILATPSIVTLDNMEATFNVGQEVPVLTGSQTTSGDNIFNTVERKTVGIKLKVKPQI 494 Query: 613 TPDNRIIMEVKVTKDEPDY----LNAVLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQ 668 + +++E++ ++ LG VN VL+ GET+V+GG+ + Sbjct: 495 NEGDSVLLEIEQEVSSVADAASSTSSDLGAT-FNTRTVNNAVLVGSGETVVVGGLLDKSV 553 Query: 669 SKVVDKVPFLGDVPYLGRLFRRDVVSESKSELLVFLTPRIMNNQA 713 S DKVP LGD+P +G LFR SK L++F+ P ++ ++ Sbjct: 554 SDTADKVPLLGDIPVIGALFRSTSKKVSKRNLMLFIRPTVIRDRD 598 Score = 44.1 bits (104), Expect = 2e-06 Identities = 32/183 (17%), Positives = 72/183 (39%), Gaps = 10/183 (5%) Query: 300 GEKLSLNFQDIDVRSVLQLIADFTNLNLVASDTVQGGITLRLQN-VPWDQALDL---VLK 355 E+ S +F+ D++ + ++ N ++ +V+G IT+R + + +Q VL Sbjct: 27 AEEFSASFKGTDIQEFINTVSKNLNKTVIIDPSVRGTITVRSYDMLNEEQYYQFFLSVLD 86 Query: 356 TKGLDKRKVGN-VLLVAPADEIAARERQELESLKQIAELAPLRRELLQVNYAKAADIAKL 414 G + N VL V + + A + S + ++ + A D+A L Sbjct: 87 VYGFAVINMNNGVLKVVRSKD-AKTAAVPVASDAAPGIGDEVVTRVVPLTNVAARDLAPL 145 Query: 415 FQSVTSAESKADERGSITVDDRTNNIIAYQTQERLDELRRIVSQLDIPVRQVMIEARIVE 474 + + GS+ + +N ++ + L IV ++D + ++ + Sbjct: 146 LRQLND----NAGVGSVVHYEPSNVLLMTGRAAVIKRLLTIVERVDNAGDRSVVTVPLSW 201 Query: 475 ANV 477 A+ Sbjct: 202 ASA 204
>PF05272#Virulence-associated E family protein Length = 892 Score = 27.3 bits (60), Expect = 0.039 Identities = 8/19 (42%), Positives = 11/19 (57%) Query: 4 LILVGPMGAGKSTIGRLLA 22 ++L G G GKST+ L Sbjct: 599 VVLEGTGGIGKSTLINTLV 617
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 42.3 bits (99), Expect = 2e-06 Identities = 30/127 (23%), Positives = 41/127 (32%), Gaps = 5/127 (3%) Query: 360 SDEDAVPTGSPAQPPTVTTTAPPA--GVPAGQAAAQTPRSSIPAPTPAPAPAAKPAPAQT 417 S + +PAQP +VT AP A Q + P P P P P P A Sbjct: 36 SVHQVIELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEP---PKEAPV 92 Query: 418 QVATAKPAPAPAAKPAEKPAAAAAKPAAGGSWYSSQAPGHYVVQILGTSSEATAQAYVAE 477 + KP P P KP +K S +S + +++ A V Sbjct: 93 VIEKPKPKPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATSKPVTS 152 Query: 478 QGGEYRY 484 R Sbjct: 153 VASGPRA 159
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 41.9 bits (98), Expect = 2e-07 Identities = 19/89 (21%), Positives = 39/89 (43%), Gaps = 5/89 (5%) Query: 1 MKHAGFTLIELLIVVALVAILANVATPSFKELIDSSRGLATARELASGIRSARAAAVTRN 60 M+ GFTL+E+++++ L+ + A + +F D S AR + +R + + Sbjct: 1 MRQRGFTLLEMMLILLLMGVSAGMVLLAFPASRDDSAAQTLAR-FEAQLRFVQQRGLQTG 59 Query: 61 QIVTLHAIENDWSNGWRIILDADGKGPDE 89 Q + + D W+ ++ G D Sbjct: 60 QFFGVS-VHPD---RWQFLVLEARDGADP 84
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 41.4 bits (97), Expect = 2e-07 Identities = 16/55 (29%), Positives = 36/55 (65%), Gaps = 3/55 (5%) Query: 6 KGFSLIELLVTVSLVGILAAIAIPNFTSSI---QSNKADTELSDLQRALNYARLE 57 +GF+L+E++V + ++G+LA++ +PN + KA +++ L+ AL+ +L+ Sbjct: 8 RGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKLD 62
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 27.9 bits (62), Expect = 0.011 Identities = 9/24 (37%), Positives = 18/24 (75%), Gaps = 2/24 (8%) Query: 8 RQTGMTLIEVLVSVLILAIGLLGA 31 +Q G TL+E++V ++I+ G+L + Sbjct: 6 KQRGFTLLEIMVVIVII--GVLAS 27
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 31.1 bits (70), Expect = 0.002 Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 1/63 (1%) Query: 6 RGFGLVEIMVALVLGLVVSLGIVQIFTAARGTYQSQNAAARMQEDARFLLSKLMQEIRMT 65 RGF L+E+M+ L+L V + ++ F A+R +Q AR + RF+ + +Q + Sbjct: 4 RGFTLLEMMLILLLMGVSAGMVLLAFPASRDDSAAQT-LARFEAQLRFVQQRGLQTGQFF 62 Query: 66 GMY 68 G+ Sbjct: 63 GVS 65
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 48.7 bits (116), Expect = 3e-10 Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 2/66 (3%) Query: 1 MRATS--RGFTLIELMIVVAIVGILAAIAYPSYTEYVKRTQRSAIASLLSEQTQALERFY 58 MRAT RGFTL+E+M+V+ I+G+LA++ P+ ++ + S + AL+ + Sbjct: 1 MRATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYK 60 Query: 59 SQKGNY 64 +Y Sbjct: 61 LDNHHY 66
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 506 bits (1304), Expect = e-180 Identities = 173/476 (36%), Positives = 263/476 (55%), Gaps = 34/476 (7%) Query: 3 QRQKILIVDDEPDIRELLEITLGRMKLDTRSARNVAEAHDWLAREPFDMCLTDMRLPDGN 62 IL+ DD+ IR +L L R D R N A W+A D+ +TD+ +PD N Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 63 GLELVQHIQHGYPHVPVAMITAHGNLDTAIHALKAGAFDFVTKPVDLGRLRELVNSALSL 122 +L+ I+ P +PV +++A TAI A + GA+D++ KP DL L ++ AL+ Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 123 PGAQPTRSIDNR-----LLGDSLAMRTLRSQIGKLARSQAPIYISGESGSGKELVARLIH 177 P +P++ D+ L+G S AM+ + + +L ++ + I+GESG+GKELVAR +H Sbjct: 122 PKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALH 181 Query: 178 EQGPRIDKPFIPVNCGAIPSELMESEFFGHRKGSFSGAHEDKPGLFQAAHTGTLFLDEVA 237 + G R + PF+ +N AIP +L+ESE FGH KG+F+GA G F+ A GTLFLDE+ Sbjct: 182 DYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIG 241 Query: 238 DLPLAMQVKLLRAIQEKSIRSVGGQQEQIVDVRILCATHKNLNAEVAAGRFRQDLYYRLN 297 D+P+ Q +LLR +Q+ +VGG+ DVRI+ AT+K+L + G FR+DLYYRLN Sbjct: 242 DMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLN 301 Query: 298 VIEVRVPSLRERREDIDQLAASVLKRLAGNGAQPVARLNAQALETLKSYRFPGNVRELEN 357 V+ +R+P LR+R EDI L +++ G V R + +ALE +K++ +PGNVRELEN Sbjct: 302 VVPLRLPPLRDRAEDIPDLVRHFVQQAEKEG-LDVKRFDQEALELMKAHPWPGNVRELEN 360 Query: 358 MLERAYTLCENDEIHASDLRL---------------------TESASPQENDGPSLADID 396 ++ R L D I + + S + +EN A Sbjct: 361 LVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFG 420 Query: 397 N-------LEDYLESVERQLILQALEETRWNRTAAAERLSLSFRSLRYRLKKLGLD 445 + + L +E LIL AL TR N+ AA+ L L+ +LR ++++LG+ Sbjct: 421 DALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGVS 476
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 47.2 bits (112), Expect = 9e-10 Identities = 17/52 (32%), Positives = 33/52 (63%), Gaps = 4/52 (7%) Query: 1 MNAQKGFTLIELMIVVAIVGILAAVAIPQYRDYTMRAR----FSDVVSVAST 48 + Q+GFTL+E+M+V+ I+G+LA++ +P +A SD+V++ + Sbjct: 4 TDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENA 55
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 62.7 bits (152), Expect = 4e-13 Identities = 38/170 (22%), Positives = 63/170 (37%), Gaps = 28/170 (16%) Query: 184 TGTAFVVGPAHVMTCAHVIE-DMGVFYITSLE-----------GRYKAEPVVI-DRRNDI 230 + VVG ++T HV++ G + G + AE + D+ Sbjct: 103 IASGVVVGKDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGEGDL 162 Query: 231 ALLRV----QGAPP---LSPVTFRDGQGCEPGDTVAVLGYPLASISGGGLQVTQGGISGL 283 A+++ Q + P T + + + V GYP + ++G I+ L Sbjct: 163 AIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYPGDK-PVATMWESKGKITYL 221 Query: 284 FGLHNDASLFQFTAPIQPGSSGSPLFDNGGAVIGMVTSTVPDGQNMNFAV 333 G Q+ G+SGSP+F+ VIG+ VP N AV Sbjct: 222 KG-----EAMQYDLSTTGGNSGSPVFNEKNEVIGIHWGGVP--NEFNGAV 264
>MYCMG045#Hypothetical mycoplasma lipoprotein (MG045) signature. Length = 483 Score = 28.9 bits (64), Expect = 0.022 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%) Query: 3 NDRPLIFVDLDDTLFQTARKTPAGIEKHVATLDITGKANGYMTNVQKSFAHWLLAHSDV 61 ND L+F+D T+F A + A ++ GY TNV +SF L S++ Sbjct: 185 NDNRLVFIDDARTIFSLA--NIVNTNNNSADVNPKEDGIGYFTNVYESFQRLGLTKSNL 241
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 35.6 bits (82), Expect = 0.001 Identities = 26/199 (13%), Positives = 62/199 (31%), Gaps = 18/199 (9%) Query: 209 EHSLRSGSVDYIAACEEAFRD-VRRMEQDYNSLVLAGPLVEALAAGVKQRDVLRGKLHRL 267 E + A E R + + N L E V + +VLR L Sbjct: 133 EADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLR-----L 187 Query: 268 SPILDSLLGTWSDYSGARKEELVIQAEHYRAQQDEMQNDQRSSTQELMRLEREISSIQRW 327 + ++ TW +K + + + RA++ + + + Sbjct: 188 TSLIKEQFSTW----QNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSL 243 Query: 328 VGELSVLKNRF--------ALVDDVKVLEQQLLAAKDAHDELAGALAQSRQFSAEDLDER 379 + + ++ K+ V++++V + QL + Q ++ ++ Sbjct: 244 LHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDK 303 Query: 380 LRDLEKRLKSVKQQLDHAD 398 LR + + +L + Sbjct: 304 LRQTTDNIGLLTLELAKNE 322
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 30.3 bits (68), Expect = 0.006 Identities = 18/83 (21%), Positives = 27/83 (32%), Gaps = 2/83 (2%) Query: 29 APSRPQLLVPLPPPVEVQRVAPAASPAEHAAPAEASNVEPIARQPERPRVEVPRPSLAST 88 AP++P + + P A P P EPI P+ V + +P Sbjct: 45 APAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEP--EPIPEPPKEAPVVIEKPKPKPK 102 Query: 89 RTAPPAAEEAEPAPPKAPVVPPP 111 P + +P PV P Sbjct: 103 PKPKPVKKVEQPKRDVKPVESRP 125
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 38.4 bits (89), Expect = 3e-06 Identities = 15/59 (25%), Positives = 27/59 (45%) Query: 64 DEAHLLNITVKPENQGRGLGLLLLDHLMKRAYQLNARECFLELRDSNRPAYRLYENYGF 122 A + +I V + + +G+G LL ++ A + + LE +D N A Y + F Sbjct: 88 GYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHF 146
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 32.0 bits (72), Expect = 0.008 Identities = 29/200 (14%), Positives = 62/200 (31%), Gaps = 6/200 (3%) Query: 278 STIDQIYAAATQLSQSVQEMGSIAEASALNLQLQNTEIEQAAVAVNQMSQAAIEVAGNAS 337 +T D A S Q + + N ++N E A ++ + N Sbjct: 1164 TTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRH 1223 Query: 338 NTVTESEASTRAAAQGQEKLSATILSIKALTENV------LDSSHQAEGLAERTQSISSI 391 S A +T+ + N + Q L I Sbjct: 1224 RRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTNAVLSDARAKAQFVALNVGKAVSQHI 1283 Query: 392 LDVIRAIANQTNLLALNAAIEAARAGEAGRGFAVVADEVRSLAQRTSASTAEIEGLISGV 451 + Q N+ N ++ + R F+ + + + +T ++ ++ G+ + V Sbjct: 1284 SQLEMNNEGQYNVWVSNTSMNKNYSSSQYRRFSSKSTQTQLGWDQTISNNVQLGGVFTYV 1343 Query: 452 QQSTQQTASSLRHTATQANL 471 + S ++ ++T Q N Sbjct: 1344 RNSNNFDKATSKNTLAQVNF 1363
>AEROLYSIN#Aerolysin signature. Length = 493 Score = 31.5 bits (71), Expect = 0.007 Identities = 39/152 (25%), Positives = 62/152 (40%), Gaps = 27/152 (17%) Query: 105 FAHGPLGMHDLRLADHPFSFKVLVSEFPAKEQRPALRFLTAID---TETFW-----HTQH 156 F HG + D +L + V S+ P LR+ TA + T T+ T++ Sbjct: 207 FKHGDVTQSDRQLVKTVVGWAVNDSDTPQSGYDVTLRYDTATNWSKTNTYGLSEKVTTKN 266 Query: 157 SLLVALISLATLGILLASALGYWVARIGLRPLTSLSQEVQKLAPPRLSGRLQLSPLPPEL 216 L+ L I +A+ W ++ G TSLSQ V+ P R S +P ++ Sbjct: 267 KFKWPLVGETELSIEIAANQS-WASQNGGSTTTSLSQSVRPTVPAR-------SKIPVKI 318 Query: 217 EQFVASFNSTLERVEQAYSRLESFNADVAHEL 248 E + A + E F ADV+++L Sbjct: 319 ELYKADISYPYE-----------FKADVSYDL 339
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 81.4 bits (201), Expect = 5e-20 Identities = 30/126 (23%), Positives = 58/126 (46%), Gaps = 2/126 (1%) Query: 2 RVLIIEDEEKTADYLRRGLTEQGYAVDVARDGIEGLHLALENDHAIVILDVMLPGLDGFG 61 +L+ +D+ L + L+ GY V + + D +V+ DV++P + F Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 VLRALRAR-KQTPVIMLTAREQIDDRIRGLREGADDYLGKPFSFLELVARL-QALTRRSG 119 +L ++ PV++++A+ I+ +GA DYL KPF EL+ + +AL Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 120 GHEPIQ 125 ++ Sbjct: 125 RPSKLE 130
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 749 bits (1936), Expect = 0.0 Identities = 285/1033 (27%), Positives = 496/1033 (48%), Gaps = 32/1033 (3%) Query: 12 IDHPVATLLLTFALVLLGVIAFPRLPIAPLPEAEFPTIQVTAQLPGASPETMASSVATPL 71 I P+ +L L++ G +A +LP+A P P + V+A PGA +T+ +V + Sbjct: 6 IRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVTQVI 65 Query: 72 EVQFSAIPGMTQMTSSSA-LGSTNLTLQFTLNKSIDTAAQEVQAAINTAAGRLPADLPSL 130 E + I + M+S+S GS +TL F D A +VQ + A LP ++ Sbjct: 66 EQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEVQQ- 124 Query: 131 PTWRKVNPADSPVLILSVSSS--LIPGTELSDVTETILARQLSQIEGVGQVFITGQQRPA 188 + S +++ S ++SD + + LS++ GVG V + G Q A Sbjct: 125 QGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGAQY-A 183 Query: 189 IRVQAAPEKLAALGLTLADIRLAVQQTSLNLAKGALYGKDSIS------TLSSNDQLFKP 242 +R+ + L LT D+ ++ + +A G L G ++ ++ + + P Sbjct: 184 MRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFKNP 243 Query: 243 QDYAQLIV-SYKNGAPVQLKDVARVVAGSENAYVKAWSGDQQGVNIAIFRQPGANIVDTV 301 +++ ++ + +G+ V+LKDVARV G EN V A + + I GAN +DT Sbjct: 244 EEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTA 303 Query: 302 DRIQRELPRLQEMLPASVDVSVLNDRTRTIRASLHEVEMTLMIAVLLVVAVMALFLRQLS 361 I+ +L LQ P + V D T ++ S+HEV TL A++LV VM LFL+ + Sbjct: 304 KAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMR 363 Query: 362 ATLIVSAVLGVSLIASFAMMYLFGFSLNNLTLVAIVVAVGFVVDDAIVVVENIHRHL-EA 420 ATLI + + V L+ +FA++ FG+S+N LT+ +V+A+G +VDDAIVVVEN+ R + E Sbjct: 364 ATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMMED 423 Query: 421 GQDMREAAIKGSGEIGFTVVSISFSLVAAFIPLLFMGGVVGRLFKEFALTATATILISVV 480 +EA K +I +V I+ L A FIP+ F GG G ++++F++T + + +SV+ Sbjct: 424 KLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVL 483 Query: 481 VSLTLAPTLAALFMR--APTHHPHQKPGFG------ERLLASYERGLRKALAHQRLMLGV 532 V+L L P L A ++ + HH ++ FG + + Y + K L L + Sbjct: 484 VALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYLLI 543 Query: 533 FGLTLALAVVGYILIPKGFFPVQDTAFALGTTEAAADISYPDMVEKHLELAKIVGADPAV 592 + L +A VV ++ +P F P +D L + A + + ++ + Sbjct: 544 YALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKNEKA 603 Query: 593 LAFS--HSVGVSGSNQTIANGRFWISLKPRAERDV---SVSEFIDRLRPKLAKVPGIVLY 647 S G S S Q G ++SLKP ER+ S I R + +L K+ + Sbjct: 604 NVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDGFVI 663 Query: 648 LRAGQDINLSSGPSRSQYQYVLKSNDG-ELLNTWTQRLTEKLRSNPA-FRDMSNDLQLGG 705 I + ++ + ++ G + L +L +PA + + Sbjct: 664 PFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGLEDT 723 Query: 706 SVTHIDIDRSAAARFGLTTADVDQALYDAFGQRQISEYQTEVNQYKVILELDAQQRGKAE 765 + +++D+ A G++ +D++Q + A G ++++ K+ ++ DA+ R E Sbjct: 724 AQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRMLPE 783 Query: 766 SLAYFYLRSPLTSEMVPLSALAKVSAPRRGPLSISHDGMFPAANLSFNLAPGVALGDAVR 825 + Y+RS EMVP SA G + P+ + APG + GDA+ Sbjct: 784 DVDKLYVRSA-NGEMVPFSAFTTSH-WVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAMA 841 Query: 826 MLDQAKNEIGMPASIIGSFQGAAQAFQSSLANQPWLILAALVAVYIILGVLYESFVHPLT 885 +++ ++ +PA I + G + + S P L+ + V V++ L LYES+ P++ Sbjct: 842 LMENLASK--LPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVS 899 Query: 886 IISTLPSAGIGALLLLWMMGQDFSIMALIGVVLLIGIVKKNGILLVDFALQAQREQGLTP 945 ++ +P +G LL + Q + ++G++ IG+ KN IL+V+FA ++G Sbjct: 900 VMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGV 959 Query: 946 QEAIYEACITRFRPIIMTTLAALLGALPLMLGFGVGSELRQPLGIAVVGGLLVSQMLTLF 1005 EA A R RPI+MT+LA +LG LPL + G GS + +GI V+GG++ + +L +F Sbjct: 960 VEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIF 1019 Query: 1006 TTPVIYLQLERLF 1018 PV ++ + R F Sbjct: 1020 FVPVFFVVIRRCF 1032 Score = 101 bits (254), Expect = 6e-24 Identities = 80/526 (15%), Positives = 176/526 (33%), Gaps = 49/526 (9%) Query: 1 MNGRGSVSAWCIDHPVATLLLTFALVLLGVIAFPRLPIAPLPEAEFPTIQVTAQLP-GAS 59 +N + + LL+ +V V+ F RLP + LPE + QLP GA+ Sbjct: 523 VNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGAT 582 Query: 60 PETMASSVATPLEVQF-SAIPGMTQMTSSSALG----STNLTLQFTLNKSID--TAAQEV 112 E + + + + + + + + N + F K + + Sbjct: 583 QERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENS 642 Query: 113 QAAINTAAGRLPADLPSLPTWRKVNPADSPVLILSVSSSL---------IPGTELSDVTE 163 A+ R +L + + ++ L ++ + L+ Sbjct: 643 AEAV---IHRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARN 699 Query: 164 TILARQLSQIEGVGQVFITGQQ-RPAIRVQAAPEKLAALGLTLADIRLAVQQTSLNLAKG 222 +L + V G + +++ EK ALG++L+DI + Sbjct: 700 QLLGMAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTIS--------- 750 Query: 223 ALYGKDSISTLSSNDQLFK------------PQDYAQLIVSYKNGAPVQLKDVARVVAGS 270 G ++ ++ K P+D +L V NG V Sbjct: 751 TALGGTYVNDFIDRGRVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVY 810 Query: 271 ENAYVKAWSGDQQGVNIAIFRQPGANIVDTVDRIQRELPRLQEMLPASVDVSVLNDRTRT 330 + ++ ++G + I PG + D + ++ L LPA + + Sbjct: 811 GSPRLERYNG-LPSMEIQGEAAPGTSSGDAMALME----NLASKLPAGIGYDWT-GMSYQ 864 Query: 331 IRASLHEVEMTLMIAVLLVVAVMALFLRQLSATLIVSAVLGVSLIASFAMMYLFGFSLNN 390 R S ++ + I+ ++V +A S + V V+ + ++ LF + Sbjct: 865 ERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDV 924 Query: 391 LTLVAIVVAVGFVVDDAIVVVENI-HRHLEAGQDMREAAIKGSGEIGFTVVSISFSLVAA 449 +V ++ +G +AI++VE + G+ + EA + ++ S + + Sbjct: 925 YFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILG 984 Query: 450 FIPLLFMGGVVGRLFKEFALTATATILISVVVSLTLAPTLAALFMR 495 +PL G + ++ + ++++ P + R Sbjct: 985 VLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFVVIRR 1030 Score = 90.3 bits (224), Expect = 2e-20 Identities = 71/417 (17%), Positives = 141/417 (33%), Gaps = 36/417 (8%) Query: 625 VSVSEFIDRLRPKL---AKVPGIVLYLRAGQDINLSSGPSRSQYQYVLKSNDGELLNTWT 681 V V + P L + GI + SS S++ Sbjct: 105 VQVQNKLQLATPLLPQEVQQQGISVE-------KSSSSYL---MVAGFVSDNPGTTQDDI 154 Query: 682 QRLTEKLRSNPAFRDMSN--DLQLGGS--VTHIDIDRSAAARFGLTTADVDQALYDAFGQ 737 ++ D+QL G+ I +D ++ LT DV L Q Sbjct: 155 SDYVAS-NVKDTLSRLNGVGDVQLFGAQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQ 213 Query: 738 RQISEYQTEVNQYKVILELDAQQRGKAESLAYF---YLRSPLTSEMVPLSALAKVSAPRR 794 + L + + ++ F LR +V L +A+V Sbjct: 214 IAAGQLGGTPALPGQQLNASIIAQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARV---EL 270 Query: 795 GPLSISHDGMF---PAANLSFNLAPGVALGDAVRMLDQAKNEI-----GMPASI-IGSFQ 845 G + + PAA L LA G +A+ K ++ P + + Sbjct: 271 GGENYNVIARINGKPAAGLGIKLATGA---NALDTAKAIKAKLAELQPFFPQGMKVLYPY 327 Query: 846 GAAQAFQSSLANQPWLILAALVAVYIILGVLYESFVHPLTIISTLPSAGIGALLLLWMMG 905 Q S+ + A++ V++++ + ++ L +P +G +L G Sbjct: 328 DTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFG 387 Query: 906 QDFSIMALIGVVLLIGIVKKNGILLVDFALQAQREQGLTPQEAIYEACITRFRPIIMTTL 965 + + + G+VL IG++ + I++V+ + E L P+EA ++ ++ + Sbjct: 388 YSINTLTMFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAM 447 Query: 966 AALLGALPLMLGFGVGSELRQPLGIAVVGGLLVSQMLTLFTTPVIYLQLERLFHRRH 1022 +P+ G + + I +V + +S ++ L TP + L + H Sbjct: 448 VLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEH 504
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 56.4 bits (136), Expect = 8e-11 Identities = 26/141 (18%), Positives = 53/141 (37%), Gaps = 22/141 (15%) Query: 55 VTGIGSV-LSLQSVVIRPQVDGVLTRVLVKEGQQVKAGDLLATLDDRSIRAALEQARAQL 113 T G + S +S I+P + ++ ++VKEG+ V+ GD+L L A + ++ L Sbjct: 84 ATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSL 143 Query: 114 AQSKA-----QLDVAQLDLKRYRQLT------------QDNGISRQTFDQQ----QAMVR 152 Q++ Q+ ++L + +L ++ +Q Q Sbjct: 144 LQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKY 203 Query: 153 QLEATAKGNEASINASQVQLS 173 Q E A +++ Sbjct: 204 QKELNLDKKRAERLTVLARIN 224 Score = 35.6 bits (82), Expect = 3e-04 Identities = 8/76 (10%), Positives = 27/76 (35%) Query: 103 RAALEQARAQLAQSKAQLDVAQLDLKRYRQLTQDNGISRQTFDQQQAMVRQLEATAKGNE 162 RA A++ + + V + L + L I++ +Q+ + + + Sbjct: 213 RAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYK 272 Query: 163 ASINASQVQLSYTQIR 178 + + + ++ + Sbjct: 273 SQLEQIESEILSAKEE 288 Score = 34.4 bits (79), Expect = 8e-04 Identities = 15/83 (18%), Positives = 36/83 (43%), Gaps = 9/83 (10%) Query: 103 RAALEQARAQLAQSKAQLDVAQLDLKRYRQLTQDNGISRQTFDQQQAMVRQLEATAKGNE 162 L ++QL Q ++++ A+ + + QL + + D+ +RQ Sbjct: 265 VNELRVYKSQLEQIESEILSAKEEYQLVTQLFK-----NEILDK----LRQTTDNIGLLT 315 Query: 163 ASINASQVQLSYTQIRSPVTGRV 185 + ++ + + IR+PV+ +V Sbjct: 316 LELAKNEERQQASVIRAPVSVKV 338
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 727 bits (1879), Expect = 0.0 Identities = 303/868 (34%), Positives = 450/868 (51%), Gaps = 48/868 (5%) Query: 19 HPRRGALGIGFGLTLMCAVSASAASSGGDGAVRFNTAFIQGSDQ-PADLQEFLRSNSVLP 77 H R+ L GF + L A + +A + + FN F+ Q ADL F + P Sbjct: 17 HIRKHRL-AGFFVRLFVACAFAAQAPLSSAELYFNPRFLADDPQAVADLSRFENGQELPP 75 Query: 78 GIYRVDIYVNRKLSGRRDIRFLKSPLSGLIEPCLSLEMLQSFGLDLSRLPPGE-ASAQAC 136 G YRVDIY+N RD+ F I PCL+ L S GL+ + + + AC Sbjct: 76 GTYRVDIYLNNGYMATRDVTFNTGDSEQGIVPCLTRAQLASMGLNTASVSGMNLLADDAC 135 Query: 137 FDLPARVAFARVDYQPGALRLTISVPQAVMSRGARGYVSPELWDQGETAGFINYNFNGSR 196 L + + A G RL +++PQA MS ARGY+ PELWD G AG +NYNF+G+ Sbjct: 136 VPLTSMIHDATAQLDVGQQRLNLTIPQAFMSNRARGYIPPELWDPGINAGLLNYNFSGNS 195 Query: 197 RRNK-GLETEQYYVGLRNGLNVGAWRLRNESSL-----VGGSDRPWRYRSNRTFAQRDIT 250 +N+ G + Y+ L++GLN+GAWRLR+ ++ S +++ T+ +RDI Sbjct: 196 VQNRIGGNSHYAYLNLQSGLNIGAWRLRDNTTWSYNSSDSSSGSKNKWQHINTWLERDII 255 Query: 251 TLKSQLTLGETFTDSQVFDSVRFRGAALASDDGMLSDSERAYAPVIRGIAETNATVEVRQ 310 L+S+LTLG+ +T +FD + FRGA LASDD ML DS+R +APVI GIA A V ++Q Sbjct: 256 PLRSRLTLGDGYTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQVTIKQ 315 Query: 311 NGFLLYSGSVSPGPFEIADIYPSGSNGDLSVSVIEADGRVRTFTQAYASLPIMVPAGSLR 370 NG+ +Y+ +V PGPF I DIY +G++GDL V++ EADG + FT Y+S+P++ G R Sbjct: 316 NGYDIYNSTVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQREGHTR 375 Query: 371 YSLAGGQVDNNDDQQASPAFASVALIYGLSERITGFAGVQLAEDYQAANIGTGINTG-LG 429 YS+ G+ + + QQ P F L++GL T + G QLA+ Y+A N G G N G LG Sbjct: 376 YSITAGEYRSGNAQQEKPRFFQSTLLHGLPAGWTIYGGTQLADRYRAFNFGIGKNMGALG 435 Query: 430 AVSMDLTRSVSKV-DQRARSGQSLRVRYANTLDVTDTTLAVAGYRYSTEQYRTLSQHVSD 488 A+S+D+T++ S + D GQS+R Y +L+ + T + + GYRYST Y + Sbjct: 436 ALSVDMTQANSTLPDDSQHDGQSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFADTTYS 495 Query: 489 SGALRQLRASGLA-----------------RDRLELSITQIVPGQSASLSLTASEQRYWN 531 + R +L+L++TQ + G++++L L+ S Q YW Sbjct: 496 RMNGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQL-GRTSTLYLSGSHQTYWG 554 Query: 532 LSGKTRQLYLSYNAAWYSLNYSLSIERNEDFGRSGDASTDNRVALSVTLPLG-------- 583 S Q N A+ +N++LS ++ + G D +AL+V +P Sbjct: 555 TSNVDEQFQAGLNTAFEDINWTLSYSLTKNAWQKG---RDQMLALNVNIPFSHWLRSDSK 611 Query: 584 SSPGSSRLSFNAVRDSRGEYNAQAGLNGQVPGDRDTFYSVQAGR----DSSSGSFGAGKV 639 S + S++ D G AG+ G + D + YSVQ G D +SGS G + Sbjct: 612 SQWRHASASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGDGNSGSTGYATL 671 Query: 640 STSTAFGRFEAGYSQGQDYDAFSLSAAGSLVAHAGGVNLGQTLGETFALVQVPDVGGARL 699 + +G GYS D +G ++AHA GV LGQ L +T LV+ P A++ Sbjct: 672 NYRGGYGNANIGYSHSDDIKQLYYGVSGGVLAHANGVTLGQPLNDTVVLVKAPGAKDAKV 731 Query: 700 KSFSNVETARNGYAVLPYAQAYRTNWVSLDTRQLGADVDLENAITQIVPRRGAIPVVRFK 759 ++ + V T GYAVLPYA YR N V+LDT L +VDL+NA+ +VP RGAI FK Sbjct: 732 ENQTGVRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVPTRGAIVRAEFK 791 Query: 760 ANVGRRVQFELVRVDGSKVPLGASVEDEQGRALAVVDPGSQALVLSEQDAGSLWVRWSD- 818 A VG ++ + + +P GA V E ++ +V Q + AG + V+W + Sbjct: 792 ARVGIKLLM-TLTHNNKPLPFGAMVTSESSQSSGIVADNGQVYLSGMPLAGKVQVKWGEE 850 Query: 819 --QRCQATFSLPPRDPSRAYERIRVVCR 844 C A + LPP + ++ CR Sbjct: 851 ENAHCVANYQLPPESQQQLLTQLSAECR 878
>PF04183#IucA / IucC family Length = 580 Score = 31.4 bits (71), Expect = 0.009 Identities = 16/96 (16%), Positives = 26/96 (27%), Gaps = 16/96 (16%) Query: 25 LASSSVRELSPAEHANLQAITDYLKDHVF----------------AAHKLPLSESAVDQD 68 +S R + A + +L+ AA + A Sbjct: 279 YNTSCYRGIPGRYIAAGPLASRWLQQVFATDATLVQSGAVILGEPAAGYVSHEGYAALAR 338 Query: 69 AVHAHNEQLDKIIDARARRLLDEGETPATIADTFAK 104 A + + E L I R L E+P +A Sbjct: 339 APYRYQEMLGVIWRENPCRWLKPDESPVLMATLMEC 374
>cloacin#Cloacin signature. Length = 551 Score = 36.2 bits (83), Expect = 2e-04 Identities = 25/99 (25%), Positives = 32/99 (32%), Gaps = 15/99 (15%) Query: 130 GSDGGTQEASGGDEGGGTTAATGGDGGGGTSPTTEGDGGGTSPTAEGDGGGSYVSTGADG 189 G + G SG GG T G G ++G G + G G GS + G Sbjct: 8 GHNTGAHSTSGNINGGPT-------GLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 190 SGAPSTEDGTGGGGGSDGVTPQVT--------PQLANPG 220 +G GGG G P L+ PG Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPG 99 Score = 31.6 bits (71), Expect = 0.006 Identities = 30/96 (31%), Positives = 35/96 (36%), Gaps = 15/96 (15%) Query: 139 SGGDEGGGTTAATGGDGGGGTSPTTEGDGGGTSPTAEGDGGGSYVSTGADGSGAPSTEDG 198 SGGD G T A G PT G GGG S +G G S + GSG+ G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGAS---DGSGWSSENNPWGGGSGSGIHWGG 58 Query: 199 TGGGGGSDGVTPQVTPQLANPGRNSGNGTVSDTTGS 234 G G G NSG G+ + S Sbjct: 59 GSGHGNGGG------------NGNSGGGSGTGGNLS 82
>PF06704#DspF/AvrF protein Length = 129 Score = 220 bits (563), Expect = 4e-78 Identities = 104/129 (80%), Positives = 112/129 (86%) Query: 1 MNTSQHEFSRFITALGAQLGTSLTWQNGVCALYDSQDNEAAVIELPEHSEMVIFHCRVGR 60 MN S +FSR I +LGAQLGTSLT QNGVCALYDSQDNEAAVIE+P+HSEMVIFHCRVGR Sbjct: 1 MNNSPTDFSRLIKSLGAQLGTSLTAQNGVCALYDSQDNEAAVIEMPDHSEMVIFHCRVGR 60 Query: 61 CPERSADLQQLLSLNFDVARLHGCWFAVDQGDVRLCAQRELVSLDEPAFCDVTRGFIAQA 120 P+R+ADLQ+LLSLNFDVAR+HG WFAVDQGDVRLCAQREL LDE FCD RGFI QA Sbjct: 61 SPDRAADLQKLLSLNFDVARMHGSWFAVDQGDVRLCAQRELAVLDEAQFCDTARGFIVQA 120 Query: 121 REARAFLHA 129 REARA L A Sbjct: 121 REARALLQA 129
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 29.3 bits (65), Expect = 0.043 Identities = 22/132 (16%), Positives = 35/132 (26%), Gaps = 9/132 (6%) Query: 356 ASPGKRVIEREPSSQVAERAPTPEPLQAAGREQTAGLMQVLEREPAPESVQPVRREPQPK 415 SP + + E AE A +P Q+ + ++ QP + Sbjct: 1129 VSPKQE--QSETVQPQAEPARENDPTVNIKEPQS-------QTNTTADTEQPAKETSSNV 1179 Query: 416 VVQVARQEPLPGPAQPVQAAEQVTVSDPIQPARQASSQATNERSLLDRRIQKRLYIDDRS 475 V + V+ E T + SS R R + Sbjct: 1180 EQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATT 1239 Query: 476 SPRKRDEIAYRD 487 S R +A D Sbjct: 1240 SSNDRSTVALCD 1251
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 270 bits (692), Expect = 6e-90 Identities = 110/317 (34%), Positives = 153/317 (48%), Gaps = 45/317 (14%) Query: 32 DMDLLLCGETGTGKDTLASRIHELSSR-TGPFVGMNCAAIPESLAESQLFGVVNGAFTGV 90 D+ L++ GE+GTGK+ +A +H+ R GPFV +N AAIP L ES+LFG GAFTG Sbjct: 160 DLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGA 219 Query: 91 CRAREGYIEASSGGTLYLDEIDSMPLSLQAKLLRVLESRGVERLGSTDFIPLDLRVIASA 150 G E + GGTL+LDEI MP+ Q +LLRVL+ +G I D+R++A+ Sbjct: 220 QTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAAT 279 Query: 151 QRPLDELVEQGLFRRDLFFRLNVLTLQLPALRKRREQILPLFDQFTQDVAAESGRSVPTL 210 + L + + QGLFR DL++RLNV+ L+LP LR R E I L F Q E G V Sbjct: 280 NKDLKQSINQGLFREDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKE-GLDVKRF 338 Query: 211 DNRRVQILLSHDWPGNVRELKSAAKRFVL------------------------------- 239 D ++++ +H WPGNVREL++ +R Sbjct: 339 DQEALELMKAHPWPGNVRELENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAAR 398 Query: 240 ------------GLPLLGAEPVEARDPVTGLRMQMRVIEKMLIQDALKRHRHNFDAVLEE 287 + A +A P + +E LI AL R N + Sbjct: 399 SGSLSISQAVEENMRQYFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADL 458 Query: 288 LELPRRTLYHRMKELGV 304 L L R TL +++ELGV Sbjct: 459 LGLNRNTLRKKIRELGV 475
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 267 bits (683), Expect = 1e-88 Identities = 104/324 (32%), Positives = 157/324 (48%), Gaps = 45/324 (13%) Query: 23 AESISQLGIDVLLSGETGTGKDTIARRIHNMSGRQGR-FVPMNCAAIPESLAESELFGVV 81 + Q + ++++GE+GTGK+ +AR +H+ R+ FV +N AAIP L ESELFG Sbjct: 153 LARLMQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHE 212 Query: 82 SGAYTGADRSRMGYIEAAQGGTLYLDEIDSMPLALQAKLLRVLETRALERLGSTSTINLD 141 GA+TGA G E A+GGTL+LDEI MP+ Q +LLRVL+ +G + I D Sbjct: 213 KGAFTGAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSD 272 Query: 142 ICVIASAQACLDDAVEEGKFRRDLYFRLNVLTLKLPPLRDQPERILPLFTRFVAASAKEL 201 + ++A+ L ++ +G FR DLY+RLNV+ L+LPPLRD+ E I L FV + KE Sbjct: 273 VRIVAATNKDLKQSINQGLFREDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKE- 331 Query: 202 SVPIPDVCPLLQQVLTGHHWPGNIRELKAAAKR---------------------HVLGFP 240 + + +++ H WPGN+REL+ +R + P Sbjct: 332 GLDVKRFDQEALELMKAHPWPGNVRELENLVRRLTALYPQDVITREIIENELRSEIPDSP 391 Query: 241 LLGADSQTEEHLACG----------------------LKFQLRAIEKALIQQALKRHRNC 278 + A +++ L +E LI AL R Sbjct: 392 IEKAAARSGSLSISQAVEENMRQYFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGN 451 Query: 279 IDAASLELDIPRRTLYRRIKELSI 302 A+ L + R TL ++I+EL + Sbjct: 452 QIKAADLLGLNRNTLRKKIRELGV 475
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 94.3 bits (234), Expect = 5e-24 Identities = 43/176 (24%), Positives = 76/176 (43%), Gaps = 6/176 (3%) Query: 9 LLICMVLLGGCSDETDLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNR 68 +++ MVL D LF+ LS+QD +VA+L +I R + V ++ Sbjct: 37 IVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYR--FANGSGAIEVPADKVHE 94 Query: 69 AVRVLNAAGLPRQSRASLGDIFKKEGVISTPLEERARYIYALSQELEATLSQIDGVIVAR 128 L GLP+ ++ +E + E+ Y AL EL T+ + V AR Sbjct: 95 LRLRLAQQGLPKGGAVGF-ELLDQEKFGISQFSEQVNYQRALEGELARTIETLGPVKSAR 153 Query: 129 VHVVLPERIAPGEPVQPASAAVFIK--HSAALDPDSVRGRIQQMVASSIPGMSTQS 182 VH+ +P+ + SA+V + ALD + + +V+S++ G+ + Sbjct: 154 VHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQISA-VVHLVSSAVAGLPPGN 208
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 28.6 bits (63), Expect = 0.012 Identities = 33/138 (23%), Positives = 57/138 (41%), Gaps = 7/138 (5%) Query: 48 LEQAKADRRHQEALAQFWERANAFLDELHVQREALQQQAMTAVEELLTEALSQLLDETTL 107 LEQ A+ + Q+A R + E +AL + + ++ EA Q++ +T Sbjct: 80 LEQGLAEAKSQQAPIH--ARMQQLVSEFQTTLDALDSVIASRLMQMALEAARQVIGQTPT 137 Query: 108 AERARALVRN----LAASQLNEAVATLSVHPEMAEPVAEWLAESRFAEHWALKRDATLAT 163 + + AL++ L L L VHP+ + V + L + W L+ D TL Sbjct: 138 VDNS-ALIKQIQQLLQQEPLFSGKPQLRVHPDDLQRVDDMLGATLSLHGWRLRGDPTLHP 196 Query: 164 ESLRLSDANGAFEIDWAT 181 ++S G + AT Sbjct: 197 GGCKVSADEGDLDASVAT 214
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 75.6 bits (186), Expect = 2e-16 Identities = 38/119 (31%), Positives = 55/119 (46%), Gaps = 4/119 (3%) Query: 576 TILVVDDEPAVRLLITELLEDLGYIVLQAERGADALTILQSKAAIDLLITDVGLPGGMNG 635 TILV DD+ A+R ++ + L GY V A + + DL++TDV +P N Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAA-GDGDLVVTDVVMP-DENA 62 Query: 636 RQVADAARDVRPDLKILFVTGYAENAALAHDTLEPG-MHVLPKPFAIAELIGRVTELLE 693 + + RPDL +L ++ A E G LPKPF + ELIG + L Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQN-TFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120
>PF07132#Harpin protein (HrpN) Length = 356 Score = 30.8 bits (69), Expect = 0.005 Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 4/87 (4%) Query: 7 LDQLLKSGQSMLQDKNKG----KSGKQSSGGDSLINGLGSLLGGGKGQGASQNGLGGLLS 62 L+ LL G S Q G S + S+ + + L ++LG G Q Q L + Sbjct: 137 LEDLLGGGMSQQQGGLFGNKQPSSPEISAYTQGVNDALSAILGNGLSQTKGQTSPLQLGN 196 Query: 63 GAGGGALAAGAMSLLRGKRTRGMGGKA 89 G AGA + L +G KA Sbjct: 197 NGLQGLSGAGAFNQLGSTLGMSVGQKA 223 Score = 29.3 bits (65), Expect = 0.013 Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 1/71 (1%) Query: 6 LLDQLLKSGQSMLQDKNKGKSGKQSSGGDSLINGLGSLLGGGKGQGASQNGLGGLLSGAG 65 ++ ++ G M G G SS G LG LGGG G +GLG L G Sbjct: 54 IMTTMMFMGSMMGGGLGGGLGGLGSSLGGLGGGLLGGGLGGGLGSSL-GSGLGSALGGGL 112 Query: 66 GGALAAGAMSL 76 GGAL AG ++ Sbjct: 113 GGALGAGMNAM 123
>PERTACTIN#Pertactin signature. Length = 922 Score = 32.4 bits (73), Expect = 0.004 Identities = 16/60 (26%), Positives = 23/60 (38%) Query: 265 PVDAPVPAPTPRQVPAPVASRPVVEAPARVVAPRPAPRPSATFAPIAKPVAAAGNTEVSA 324 P P P P P+ P P + P P+ P A P + ++AA N V+ Sbjct: 569 PAPKPAPQPGPQPGPQPPQPPQPPQPPQPPQPPQRQPEAPAPQPPAGRELSAAANAAVNT 628
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 74.9 bits (184), Expect = 4e-16 Identities = 31/117 (26%), Positives = 57/117 (48%), Gaps = 3/117 (2%) Query: 664 SRKRVLVVDDSLTVRELERKLLVSRGYEVSVAVDGMDGWNALRAEDFDLLITDIDMPRMD 723 + +LV DD +R + + L GY+V + + W + A D DL++TD+ MP + Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 724 GIELVTLLRRDTRLQSLPVMVVSYKDREEDRRRGLDAGADYYLAKASFHDDALLDAV 780 +L+ +++ LPV+V+S ++ + + GA YL K F L+ + Sbjct: 62 AFDLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPK-PFDLTELIGII 115
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 51.0 bits (122), Expect = 3e-09 Identities = 30/159 (18%), Positives = 54/159 (33%), Gaps = 14/159 (8%) Query: 2 KIAIVNDMPMAIEALRRALAFEPAHQIIWVASNGADAVQRCVEQTPDLILMDLIMPVMDG 61 I + +D L +AL+ + SN A + DL++ D++MP + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVR--ITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 62 VEATRRIMAETPCAIVIVTVDHEQNMRRVFEAMGHGALDVVDTPAIGG----------PN 111 + RI P V+V M + +A GA D + P Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAI-KASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 112 PKEAAAPLLRKILNIDWLIGQRVGLERVAAT-PRAAPSR 149 PK + L + L+G+ ++ + R + Sbjct: 122 PKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTD 160
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 62.5 bits (152), Expect = 5e-13 Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 3/114 (2%) Query: 19 VLLVDDQAMIGEAVRRGLAGHESIDFHFCADPHQAIAQAVQIKPTVILQDLVMPGLDGLT 78 +L+ DD A I + + L+ D ++ +++ D+VMP + Sbjct: 6 ILVADDDAAIRTVLNQALSR-AGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 79 LVREYRSNPLTRDIPIIVLSTKEDPLIKSAAFTAGANDYLVKLPDNIELVARIR 132 L+ + D+P++V+S + + A GA DYL K D EL+ I Sbjct: 65 LLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 32.4 bits (74), Expect = 0.003 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 3/48 (6%) Query: 38 SSGLADAKDLLLMSAEEE-DQAAVDDVAAEVERLRESLEKL--EFRRM 82 SSG+A AK + + + ++ ++ DV+ E+E+L +LEK E R + Sbjct: 11 SSGVAIAKAFIHLEPNVDIEKTSITDVSTEIEKLTAALEKSKEELRAI 58
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 53.1 bits (127), Expect = 9e-11 Identities = 19/84 (22%), Positives = 37/84 (44%) Query: 28 REGSEQRRQVILDAAMRIVVRDGVRAVRHRAVAAEASVPLSATTYYFKDIDDLLTDAFAQ 87 ++ +++ RQ ILD A+R+ + GV + +A A V A ++FKD DL ++ + Sbjct: 6 KQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWEL 65 Query: 88 YVQRSADYLARLWQNTEGILREMM 111 + G ++ Sbjct: 66 SESNIGELELEYQAKFPGDPLSVL 89
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 118 bits (296), Expect = 2e-33 Identities = 47/128 (36%), Positives = 67/128 (52%), Gaps = 11/128 (8%) Query: 130 AKQTERGTLVTFGDVLFDYNKAELKPTAQGDIGKLAAFLQEN--PDRKVIVEGYTDSTGS 187 A + + DVLF++NKA LKP Q + +L + L D V+V GYTD GS Sbjct: 207 APEVQTKHFTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGS 266 Query: 188 ASYNQSLSERRANSVRMALVRMGVDPARVVTMGYGKEYPVADNTSNSGR---------AM 238 +YNQ LSERRA SV L+ G+ ++ G G+ PV NT ++ + A Sbjct: 267 DAYNQGLSERRAQSVVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAP 326 Query: 239 NRRVEVTI 246 +RRVE+ + Sbjct: 327 DRRVEIEV 334
>adhesinb#Adhesin B signature. Length = 310 Score = 27.5 bits (61), Expect = 0.017 Identities = 8/36 (22%), Positives = 15/36 (41%) Query: 13 LRGLKLAALALGSTFILAGCAGNPPSEQYAVSQSAV 48 ++ + L L + LA C+ S + S+ V Sbjct: 1 MKKCRFLVLLLLAFVGLAACSSQKSSTETGSSKLNV 36
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 73.7 bits (181), Expect = 2e-15 Identities = 34/174 (19%), Positives = 73/174 (41%), Gaps = 9/174 (5%) Query: 615 IEAATNEVIKQSEWVILLLVYLCVAAMCMITFRSWAATLCIVLPLVLTSVLGNALMAFIG 674 ++ + +EV+K L + V + + ++ ATL + + + + A++A G Sbjct: 333 VQLSIHEVVKT-----LFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFG 387 Query: 675 IGVKVATLPVVALGVGIGVDYGIYIYSRLESFLR-AGLPLQEAYYETLKSTGKAVLFTGL 733 + T+ + L +G+ VD I + +E + LP +EA +++ A++ + Sbjct: 388 YSINTLTMFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAM 447 Query: 734 CLAIGVCTWIF---SAIKFQADMGLMLTFMLLWNMFGALWLLPALARFLIRPEK 784 L+ F S + + + ++ AL L PAL L++P Sbjct: 448 VLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVS 501 Score = 45.2 bits (107), Expect = 1e-06 Identities = 25/150 (16%), Positives = 59/150 (39%), Gaps = 5/150 (3%) Query: 251 AFLITLVMLIWFTRCIRSTVAVLSTTLIAVIWQLGLMHVVGFGIDPYSMLVPFLIFAIGI 310 L+ LVM + F + +R+T+ + ++ ++ G+ I+ +M L + + Sbjct: 348 IMLVFLVMYL-FLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLV 406 Query: 311 SHGVQKINGIA-LQSSEADNALTAARRTFRQLFLPGMIAILADAVGFITLLIID--IGVI 367 + + + + + A ++ Q+ + + + FI + G I Sbjct: 407 DDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAI 466 Query: 368 -RELAIGASIGVAVIVFTNLILLPVAISYV 396 R+ +I +A+ V LIL P + + Sbjct: 467 YRQFSITIVSAMALSVLVALILTPALCATL 496 Score = 36.4 bits (84), Expect = 6e-04 Identities = 28/157 (17%), Positives = 61/157 (38%), Gaps = 8/157 (5%) Query: 629 VILLLVYLCVAAMCMITFRSWAATLCIVLPLVLTSVLGNALMAFIGIGVKVATLPVVALG 688 + ++V+LC+AA+ + SW+ + ++L + L V V + + Sbjct: 878 ISFVVVFLCLAAL----YESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTT 933 Query: 689 VGIGVDYGIYIYSRLESFLRA-GLPLQEAYYETLKSTGKAVLFTGLCLAIGVCTWIFSA- 746 +G+ I I + + G + EA ++ + +L T L +GV S Sbjct: 934 IGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNG 993 Query: 747 --IKFQADMGLMLTFMLLWNMFGALWLLPALARFLIR 781 Q +G+ + ++ A++ +P + R Sbjct: 994 AGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFVVIRR 1030
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 35.4 bits (81), Expect = 0.004 Identities = 25/118 (21%), Positives = 39/118 (33%), Gaps = 5/118 (4%) Query: 3554 EGGTYVVTGGLGGMGLALASHLAAKAKAVTLVLMSRSATVTDEVGQALQALEQQGARIQH 3613 EG +TG G+G A+A LA++ + V + +A + Sbjct: 7 EGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAE-----A 61 Query: 3614 MAVDCADREAFTAALHQVRLQHGRISGAIHAAGVQASGLIQLSQATAWAQVMGSKVVG 3671 D D A ++ + G I ++ AGV GLI W G Sbjct: 62 FPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTG 119
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 113 bits (285), Expect = 6e-30 Identities = 80/445 (17%), Positives = 156/445 (35%), Gaps = 97/445 (21%) Query: 5 KTPDTEAPRNSPPPAPLTSPVTSKPRSTRKRVVSSVIFGAVALAGVLVVLYAWQLPPFAS 64 TP E N PA L + P S R R+V+ I G + +A +L VL Sbjct: 30 DTPVREKDENEFLPAHLE--LIETPVSRRPRLVAYFIMGFLVIAFILSVL---------G 78 Query: 65 PIESTENAQ----VKGQTTLIGPQLSGYVYEVPVQDFQFVKAGDLLVRLDD--------- 111 +E A G++ I P + V E+ V++ + V+ GD+L++L Sbjct: 79 QVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLK 138 Query: 112 ---RIYRQRLDQAIAQLAV-------------------------QKASLANNLQQRRSA- 142 + + RL+Q Q+ + L + ++++ S Sbjct: 139 TQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTW 198 Query: 143 -------EATIGQRQAELQNSIAQSRKSAADLR-------RNQALVTDGSVSK------- 181 E + +++AE +A+ + R +L+ +++K Sbjct: 199 QNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQE 258 Query: 182 -------SELDVTRAADAQANAAVAEARAVLQIAREDLQT-VIVNRGSLEASVANAQAAI 233 +EL V ++ Q + + A+ Q+ + + ++ ++ + Sbjct: 259 NKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLEL 318 Query: 234 ELARIDLDNTRIVAPRDGQLGQIGVR-LGAYVNSGAQLMALVPEQR--WIVANMKETQMA 290 + I AP ++ Q+ V G V + LM +VPE + A ++ + Sbjct: 319 AKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIG 378 Query: 291 NVRLGQPVSFTVDALDG---HEMHGHVQRISPAAGSEFSLLPADNATGNFVKISQRIPVR 347 + +GQ V+A + G V+ I+ A D G + I Sbjct: 379 FINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDA-------IEDQRLGLVFNVIISIEEN 431 Query: 348 IVVDADQPMLEHLRPGMSVVVSIDT 372 + ++ + L GM+V I T Sbjct: 432 CLSTGNKNIP--LSSGMAVTAEIKT 454
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 30.2 bits (68), Expect = 0.025 Identities = 16/96 (16%), Positives = 35/96 (36%), Gaps = 7/96 (7%) Query: 100 LPPGFAVVWSGFFNFLGVMFSSGAVAFGIIALLPVELIL--QTGS-SAGFAMIFALLIAA 156 LP G W+G + + I+ + V L L S S +++ + + Sbjct: 850 LPAGIGYDWTGMSYQERLSGNQAPALVA-ISFVVVFLCLAALYESWSIPVSVMLVVPLGI 908 Query: 157 IIWNLGTWWLGLPASSSHTLIGSIIGVGIA--NALM 190 + L ++G + +G++ NA++ Sbjct: 909 VGVLLAATLFNQKNDVY-FMVGLLTTIGLSAKNAIL 943
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 84.7 bits (209), Expect = 2e-22 Identities = 34/162 (20%), Positives = 64/162 (39%), Gaps = 8/162 (4%) Query: 5 RERNKELILRAASEEFADKGFAASKTSDIAAKAGVPKPNVYYYFKSKENLYREVLESIIE 64 + ++ IL A F+ +G +++ +IA AGV + +Y++FK K +L+ E+ E Sbjct: 9 AQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSES 68 Query: 65 PILRAS------TPFNPEGVPAEVLSRYIRSKIQISRDLPFASKVFASEIMHGAPHLTAQ 118 I P +P V E+L + S + R +F G + Q Sbjct: 69 NIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQ 128 Query: 119 QIEQLNGQARHNIE-CIQAWIDSGQI-APLDPHHLMFTIWAA 158 L ++ IE ++ I++ + A L + Sbjct: 129 AQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGY 170
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 65.6 bits (160), Expect = 4e-13 Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 4/118 (3%) Query: 835 SGETILIVDDEPTVRMLLTDALGDLGYTLIEAADSLAGLKLLRSDVHIDLLITDVGLPGG 894 +G TIL+ DD+ +R +L AL GY + +++ + + + DL++TDV +P Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAG-DGDLVVTDVVMP-D 59 Query: 895 MNGRQMADAGREVRPHLKTLFITGYAE-NAAIGDEQLGPGMRVLTKPFAIEALAARVQ 951 N + ++ RP L L ++ AI + G L KPF + L + Sbjct: 60 ENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKG-AYDYLPKPFDLTELIGIIG 116
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 77.4 bits (190), Expect = 1e-19 Identities = 36/203 (17%), Positives = 79/203 (38%), Gaps = 5/203 (2%) Query: 15 KRRLPKGEVRKAEIIKAAMTLFARDGYAGASLTNIAKVAGLSQVGLLHHFPTKLVLLQAV 74 ++ + + + I+ A+ LF++ G + SL IAK AG+++ + HF K L + Sbjct: 3 RKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI 62 Query: 75 LEHRDQYIAGRLQDADQ---VASLQGFLSFLKQVMSFSIEDAAVSQALMIINTESLSVTH 131 E + I + L L V+ ++ + + II + V Sbjct: 63 WELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGE 122 Query: 132 --PAHRWFSERFAIVHGHLQAHLKLLVEAGEIRADIDARQISLEIAAMMDGMQIQWLRSP 189 + + ++ LK +EA + AD+ R+ ++ + + G+ WL +P Sbjct: 123 MAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAP 182 Query: 190 RDVQIEEGFARFLERLARDLAAR 212 + +++ ++ L Sbjct: 183 QSFDLKKEARDYVAILLEMYLLC 205
>BINARYTOXINB#Binary toxin B family signature. Length = 764 Score = 42.7 bits (100), Expect = 6e-06 Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 13/74 (17%) Query: 498 SARFTGKIKPTITGPQVFKVRADGAYKLWINDELVLEDEGAQVSFDLIPVVPRTVKTPNL 557 SA ++G IK + F AD +W++D+ ++I + K L Sbjct: 91 SAIWSGFIKVKKSDEYTFATSADNHVTMWVDDQ------------EVINKASNSNKI-RL 137 Query: 558 KAGSEYNVRLEYRR 571 + G Y ++++Y+R Sbjct: 138 EKGRLYQIKIQYQR 151
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 129 bits (325), Expect = 1e-38 Identities = 80/253 (31%), Positives = 125/253 (49%), Gaps = 15/253 (5%) Query: 7 LAGKVALVQGGSRGIGAAIVQRLAKEGAAVAFTYVSSEVSALEIQDSIVANGGRALAIRA 66 + GK+A + G ++GIG A+ + LA +GA +A + E + S+ A A A A Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVS-SLKAEARHAEAFPA 64 Query: 67 DSADEKAIRQAVQTTAETLGRLDILVNNAGILAIAPLNEFSMQDFDKTLAINVRSVFIAS 126 D D AI + +G +DILVN AG+L ++ S ++++ T ++N VF AS Sbjct: 65 DVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 127 QEAARHM--EEGGRIINIGSTNADRMPFAGGATYAMSKSALIGLTKGMARDLGPQGITVN 184 + +++M G I+ +GS N +P A YA SK+A + TK + +L I N Sbjct: 125 RSVSKYMMDRRSGSIVTVGS-NPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCN 183 Query: 185 NVQPGPVDTDMNPA-----QGE------FAETLKALMALPRYGTSEEIASFVAYLAGPEA 233 V PG +TDM + G ET K + L + +IA V +L +A Sbjct: 184 IVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQA 243 Query: 234 GYITGASLTIDGG 246 G+IT +L +DGG Sbjct: 244 GHITMHNLCVDGG 256
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 42.3 bits (99), Expect = 4e-07 Identities = 47/199 (23%), Positives = 76/199 (38%), Gaps = 30/199 (15%) Query: 3 IQGNSALILI-DLQQGIHHP-RLGRRNNPLAETHVSALLDAWRQSGRAVIHVRH-FSTSP 59 N A++LI D+Q G ++ L + Q G V++ S +P Sbjct: 26 PDPNRAVLLIHDMQNYFVDAFTAGASPVTELSANIRKLKNQCVQLGIPVVYTAQPGSQNP 85 Query: 60 E-----SVFW-PQQSGVEYQPAFV----PQADERELSKQVPDAFCGSFLEMWLRSDGIRQ 109 + + FW P + Y+ + P+ D+ L+K AF + L +R +G Q Sbjct: 86 DDRALLTDFWGPGLNSGPYEEKIITELAPEDDDLVLTKWRYSAFKRTNLLEMMRKEGRDQ 145 Query: 110 LVIAGVVTNNSVESTARSGGNLGFDVLVAHDACFTFDQKDFF---GTPRSAEEVHAMSLA 166 L+I G+ + TA +A F D K FF + E H M+L Sbjct: 146 LIITGIYAHIGCLVTAC-------------EA-FMEDIKAFFVGDAVADFSLEKHQMALE 191 Query: 167 NLHGEYATVLSTAQILQQV 185 G A + T +L Q+ Sbjct: 192 YAAGRCAFTVMTDSLLDQL 210
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 32.8 bits (74), Expect = 0.009 Identities = 44/196 (22%), Positives = 68/196 (34%), Gaps = 26/196 (13%) Query: 393 RREVLLELLERLKLRPKTVDSWLDFVDGKDRLAITIAPLD---EGLLLEQPALALIAESP 449 RRE+ L+ + K +V + LD D A +APLD L + AL + Sbjct: 75 RREIELQFRDAEKKLEASVQAELDKADAALGPAKNLAPLDVINRSLTIVGNALQQKNQKL 134 Query: 450 LFGQRVMQRRRREKRTDGGNNDAVIKNLTELREGAPVVHIDHGVGRYLGLATLEVENQVA 509 L Q+ K T G + + + E+ E A +G Y+ E+E A Sbjct: 135 LLNQK--------KITSLGAKNFLTRTAEEIGEQAVREGNINGPEAYMRFLDREMEGLTA 186 Query: 510 EFLMLAYAEDAKLYVPVANLHLIARYTGSDDETAPLHRLGSETWQKAKRKAAEQVRDVAA 569 + + KL+ I+ + L + A KA EQ A Sbjct: 187 AY-------NVKLFTEA-----ISSLQIRMNT---LTAAKASIEAAAANKAREQAAAEAK 231 Query: 570 ELLDIYARRAAREGYA 585 + AR+ A A Sbjct: 232 RKAEEQARQQAAIRAA 247
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 40.6 bits (95), Expect = 8e-06 Identities = 75/417 (17%), Positives = 149/417 (35%), Gaps = 59/417 (14%) Query: 9 SQHPLKSSFFLLFLTIFIPFGLGHFVSYLFRTVNAVIYVDLQTDLSLPASSLGLLTGVYF 68 SQ L+ + L++L I F S L V V D+ D + P +S + + Sbjct: 6 SQSNLRHNQILIWLCILS------FFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFM 59 Query: 69 LTFAAAQIPLGVMLDRYGPRSVQAPMLLFAVAGSVIFSISSTETGLLI-GRGLIGLGVAG 127 LTF+ G + D+ G + + ++ GSVI + + LLI R + G G A Sbjct: 60 LTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAA 119 Query: 128 SLMSAIKACAIWLPVERLPLSTACLLSIGGLGAMASTTPLHALLSWLTWREAFLVLALLT 187 + A ++P E + + SI +G + ++ W L+ + Sbjct: 120 FPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITI 179 Query: 188 LCVAVVIHLSVPKAYESKKTRYSDMFAAV-----------GKLYASWTFWRLALYS---- 232 + V ++ L E + + D+ + S +F +++ S Sbjct: 180 ITVPFLMKLLKK---EVRIKGHFDIKGIILMSVGIVFFMLFTTSYSISFLIVSVLSFLIF 236 Query: 233 ---------------VFAHAIYMSVLS-------------LWMGPWLRDMAGLSDSAMAN 264 + + +M + + ++D+ LS + + + Sbjct: 237 VKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGS 296 Query: 265 VLLFGAIAMVAGALTFGAITDYL-RRFGVQPIMICGTGMLI--FIGFQVLMASGLPVSPY 321 V++F ++ + FG I L R G ++ G L F+ L+ + Sbjct: 297 VIIF--PGTMSV-IIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTI 353 Query: 322 LIAMGFSFFGTSTTMNYAIVAQSVSPELAGRVSSSFNLVVFVLAFFLQWLMGAVLNL 378 +I + T+ IV+ S+ + AG S N F+ ++G +L++ Sbjct: 354 IIVFVLGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSI 410
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 37.5 bits (87), Expect = 8e-05 Identities = 43/176 (24%), Positives = 70/176 (39%), Gaps = 26/176 (14%) Query: 34 AIAKTFFPSDSAFASLMLSLATFGAGFLMRPLGAIFLGAYIDRHGRRKGLIITLAMMAMG 93 + + S+ A + LA + LM+ A LGA DR GRR L+++LA A+ Sbjct: 30 GLLRDLVHSNDVTAHYGILLALYA---LMQFACAPVLGALSDRFGRRPVLLVSLAGAAVD 86 Query: 94 TLLIACVPGYSTLGVIAPLLVLLGRLLQGFSAGVELGGVSVYLAEISTPGRKGFFVSWQS 153 ++A P L +GR++ G + G Y+A+I+ + + S Sbjct: 87 YAIMATAPFLWVL--------YIGRIVAGIT-GATGAVAGAYIADITDGDERARHFGFMS 137 Query: 154 ASQQAAVVFAGLLGVGLNHWLSPEQMGEWGWRVPFLI-----GCLIVPAIFIIRRS 204 A +V +LG GL MG + PF G + F++ S Sbjct: 138 ACFGFGMVAGPVLG-GL--------MGGFSPHAPFFAAAALNGLNFLTGCFLLPES 184 Score = 29.4 bits (66), Expect = 0.025 Identities = 11/33 (33%), Positives = 19/33 (57%) Query: 276 CVGVSNFIWLPIMGSFSDRIGRKPLLIAATVLA 308 + F P++G+ SDR GR+P+L+ + A Sbjct: 51 LYALMQFACAPVLGALSDRFGRRPVLLVSLAGA 83
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 133 bits (335), Expect = 3e-38 Identities = 74/313 (23%), Positives = 120/313 (38%), Gaps = 81/313 (25%) Query: 44 DRNFKNDGNLFGGSVGYFLTDDVEL--RLGYDEVHNVRSDSGKNIKGADTALDALYHFNN 101 + +K G +GY +TDD+++ RLG R+D+ N+ G + Sbjct: 90 NGAYKAQGVQLTAKLGYPITDDLDIYTRLG---GMVWRADTKSNVYGKN----------- 135 Query: 102 PGDMLRPYVSAGFSDQSIGQDARRGRDGSTFANIGGGAKLYFTDNFYARAGVEAQYNIDQ 161 D + G + + I + +T+N + D Sbjct: 136 -------------HDTGVSPVFAGGVEYAITPEIATRLEYQWTNNIGDAHTIG--TRPDN 180 Query: 162 GNTEWAPSVGIGVNFGGGS--KKVEAAPAPVAEVCSDSDNDGVCDNVDKCPDTPANVTVD 219 G S+G+ FG G V APAP EV + Sbjct: 181 GML----SLGVSYRFGQGEAAPVVAPAPAPAPEVQTKH---------------------- 214 Query: 220 ADGCPAVAEVVRVELDVKFDFDKSVVKPSSYGDIKNLADFMQQY--PQTTTTVEGHTDSV 277 ++ DV F+F+K+ +KP + L + + V G+TD + Sbjct: 215 ----------FTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRI 264 Query: 278 GPDAYNQKLSERRANAVKQVLVNQYGVGASRVNSVGYGETKPVADNATEAGR-------- 329 G DAYNQ LSERRA +V L+++ G+ A ++++ G GE+ PV N + + Sbjct: 265 GSDAYNQGLSERRAQSVVDYLISK-GIPADKISARGMGESNPVTGNTCDNVKQRAALIDC 323 Query: 330 -AVNRRVEAEVEA 341 A +RRVE EV+ Sbjct: 324 LAPDRRVEIEVKG 336
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 35.9 bits (82), Expect = 5e-04 Identities = 36/116 (31%), Positives = 51/116 (43%), Gaps = 9/116 (7%) Query: 358 LATRLLRATGLLHRRNIIHRDIKPENLLL-ADDGELRLLDFGLAFCPGLSAVNTEDLPG- 415 +A RLL T L + ++H DIKP N++ GE ++D GL G E G Sbjct: 250 IAHRLLDVTNHLAKAGVVHNDIKPGNVVFDRASGEPVVIDLGLHSRSG------EQPKGF 303 Query: 416 TPSYIAPE-AFNGAEPHPQQDLYAAGVTLYYLLTGQYPYGEIEAFQHRRFGAPIPA 470 T S+ APE + D++ TL + + G EI+ Q RF PA Sbjct: 304 TESFKAPELGVGNLGASEKSDVFLVVSTLLHCIEGFEKNPEIKPNQGLRFITSEPA 359
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 59.5 bits (144), Expect = 7e-12 Identities = 92/461 (19%), Positives = 164/461 (35%), Gaps = 81/461 (17%) Query: 1 MDTSFWKAG--HKPTLFAAFLYFDLSFMVWYLLGPLAVQIATDLQLTTQQRGLMVATPIL 58 M+TS+ ++ H L + S + +L IA D + +L Sbjct: 1 MNTSYSQSNLRHNQILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFML 60 Query: 59 AGAVLRFFMGLLADQLSPKTAGIIGQVI-VIGALLAAWQLGIHTYGQVLVLGVFLGMAGA 117 ++ G L+DQL K + G +I G+++ H++ +L++ F+ AGA Sbjct: 61 TFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVG---HSFFSLLIMARFIQGAGA 117 Query: 118 SFAVALPLA--SQWYPAQHQGKAMG-IAGAGNSGTVLAALIAPVLAASFGWSNVFGLALI 174 + AL + +++ P +++GKA G I G + I ++A WS + LI Sbjct: 118 AAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLL---LI 174 Query: 175 PLVLTLIAFTLMARNAPQRSKPKSMADYLKAL------------GDRDSWWFMFFYSVTF 222 P++ + LM + + + K D + S F+ ++F Sbjct: 175 PMITIITVPFLM-KLLKKEVRIKGHFDIKGIILMSVGIVFFMLFTTSYSISFLIVSVLSF 233 Query: 223 GGFI------------------------------------GLASALPGYFNDQYGLSPIT 246 F+ G S +P D + LS Sbjct: 234 LIFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAE 293 Query: 247 AGYYT--AACVFGGSLMRPLGGALADRFGGIRTLTVMYAVAAIGIAAVGFNLPSS-WAAL 303 G + + +GG L DR G + L + ++ F L ++ W Sbjct: 294 IGSVIIFPGTMSVI-IFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMT 352 Query: 304 ALFVAAMLGLGAGNGAVFQLVPQRFR-KEIGVMTGLI------GMAGGIG--GFLLAAGL 354 + V + GL + +V + +E G L+ GI G LL+ L Sbjct: 353 IIIVFVLGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSIPL 412 Query: 355 -------GTIKQNTGDYQLGLWLFAGLAVLAWFGLLNVKRR 388 + Q+T Y L LF+G+ V++W LNV + Sbjct: 413 LDQRLLPMEVDQSTYLYSNLLLLFSGIIVISWLVTLNVYKH 453
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 44.1 bits (104), Expect = 1e-07 Identities = 27/135 (20%), Positives = 58/135 (42%), Gaps = 3/135 (2%) Query: 3 RILLINDTAKKVGRLRSALIEAGFDVIDESGLIIDLPARVEAVRPDVILIDTESPGRDVM 62 IL+ +D A L AL AG+DV S L + A D+++ D P + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAA-TLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 63 EQVVLVSRDQPR-PIVMFTDEHDPGVMRQAIKSGVSAYIVEGIQAQRLQPILDVAMARFE 121 + + + + +P P+++ + ++ +A + G Y+ + L I+ A+A + Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 122 SDQALRAQLHARDQQ 136 + + + ++D Sbjct: 124 RRPS-KLEDDSQDGM 137
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 30.8 bits (69), Expect = 0.015 Identities = 30/129 (23%), Positives = 59/129 (45%), Gaps = 6/129 (4%) Query: 265 GNSSQQLASAAEEMNCITVQSSTGLGRQNQEIE---QAATAVNEMTAAVDEVARNAAAAS 321 +++ A AAE+ Q + R+ E E + A A + AA+ E A+ A Sbjct: 136 EEKARKEAEAAEKAFQEAEQRRKEIEREKAETERQLKLAEAEEKRLAALSEEAKAVEIAQ 195 Query: 322 DAAKESNASTVRGAERVASTVTAIEKLSATVLATSADVQRLAGQSNDISKVLAVIRTIAE 381 K+ +A+ + T +LS+++ A A+++ LAG+ N++++ A + + E Sbjct: 196 ---KKLSAAQSEVVKMDGEIKTLNSRLSSSIHARDAEMKTLAGKRNELAQASAKYKELDE 252 Query: 382 QTNLLALNA 390 L+ A Sbjct: 253 LVKKLSPRA 261
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 28.9 bits (64), Expect = 0.047 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%) Query: 431 NTVRAIAGFSRDSNGNTWAVVAILNDPRP 459 N V+ +A F RDS GNT V ++ PRP Sbjct: 287 NPVQVVATFGRDSQGNTTVDVQVI--PRP 313
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 70.2 bits (172), Expect = 2e-14 Identities = 43/161 (26%), Positives = 62/161 (38%), Gaps = 9/161 (5%) Query: 966 RILIVDDHPANRLLLCQQLRFLGHHCEMAENGAQGLDRWKNDAFDLVVADCNMPIMNGYD 1025 IL+ DD A R +L Q L G+ + N A DLVV D MP N +D Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 1026 MTAAIREQERACERQRCPVWGFTANAQPDEIERCRAAGMDDCLFKPISLS-MLSERLTAI 1084 + I++ R PV +A + G D L KP L+ ++ A+ Sbjct: 65 LLPRIKK-----ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119 Query: 1085 APL-APARALPFSLDSVSNLTGDRPEMVE--RLLAQLLHSN 1122 A L L G M E R+LA+L+ ++ Sbjct: 120 AEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTD 160
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 74.5 bits (183), Expect = 7e-18 Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 1/117 (0%) Query: 7 SVFIIDDHPVIRMAVRMLLENENYEVVGETDNGVDAMQMVRECMPDLIILDISIPKLDGL 66 ++ + DD IR + L Y+V T N + + DL++ D+ +P + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 67 EVLARFNTMGLPSKILVLTSQTPNLFAIRCMQSGASGYVCKQEDLSELLSSVKAVLS 123 ++L R +LV+++Q + AI+ + GA Y+ K DL+EL+ + L+ Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 47.5 bits (113), Expect = 2e-09 Identities = 19/100 (19%), Positives = 37/100 (37%), Gaps = 7/100 (7%) Query: 7 RILLVEDHPFQLIATQVLLNNHGYFLLTPVLTAAEAMAAMQR-SAEPYGLVLCDQCLPDM 65 IL+ +D L+ GY V + A + +A LV+ D +PD Sbjct: 5 TILVADDDAAIRTVLNQALSRAGY----DVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 66 SGLDLIDEAARHGWLRQAILLSGL--PDTQLENLQQLALQ 103 + DL+ + +++S T ++ ++ A Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYD 100
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 37.2 bits (86), Expect = 1e-04 Identities = 65/392 (16%), Positives = 124/392 (31%), Gaps = 53/392 (13%) Query: 42 PTISKHFDLSADQWGTVATVVMLALAVLDIPGSIWSDRYGGGWKRARFQVPLVLGYTALS 101 P I+ F+ V T ML ++ SD+ G + L+ G Sbjct: 38 PDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLG-------IKRLLLFGIIINC 90 Query: 102 FLSGFKALSGSLASF-IALRVGVNLGAGWGEPVGVSNTAEWWPVERRGFALGAHHT---- 156 F S + S S I R GA + + A + P E RG A G + Sbjct: 91 FGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAM 150 Query: 157 GYPIGAMLSGIVASFVISTYGEENWRYVFFFAFVVALPLMIFWARY--STAERITQLYVD 214 G +G + G++A ++ +W Y+ + + + + RI + Sbjct: 151 GEGVGPAIGGMIAHYI-------HWSYLLLIP--MITIITVPFLMKLLKKEVRIKGHFDI 201 Query: 215 IAAKGMTPPDSTPSTNVKGQVW--------------KSVKAT---------LSNRNIALT 251 M+ K ++ N + Sbjct: 202 KGIILMSVGIVFFMLFTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVDPGLGKNIPFMIG 261 Query: 252 AGNTLLTQVVYMGVNIVLPAYLYNILNLSLAESAGMSVVF--TLTGILGQLIWPSLSDII 309 + G ++P + ++ LS AE G ++F T++ I+ I L D Sbjct: 262 VLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAE-IGSVIIFPGTMSVIIFGYIGGILVDRR 320 Query: 310 GRRITLIICGIWMAVS---VGAFYFANTILIVIAVQLLFGLVANAVWPIYYAVASDSAQP 366 G L I +++VS + + I + + G ++ + + S S + Sbjct: 321 GPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLS-FTKTVISTIVSSSLKQ 379 Query: 367 SATSTANGIITTAMFIGGGVAPVLMGTLISMG 398 ++ F+ G ++G L+S+ Sbjct: 380 QEAGAGMSLLNFTSFLSEGTGIAIVGGLLSIP 411 Score = 34.5 bits (79), Expect = 7e-04 Identities = 36/143 (25%), Positives = 63/143 (44%), Gaps = 3/143 (2%) Query: 263 MGVNIVLPAYLYNILNLSLAESAGMSVVFTLTGILGQLIWPSLSDIIGRRITLIICG-IW 321 M +N+ LP + N N A + ++ F LT +G ++ LSD +G + L+ I Sbjct: 31 MVLNVSLPD-IANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIIN 89 Query: 322 MAVSVGAFYFANTILIVIAVQLLFGLVANAVWPIYYAVASDSAQPSATSTANGIITTAMF 381 SV F + ++I + + G A A + V + A G+I + + Sbjct: 90 CFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVA 149 Query: 382 IGGGVAPVLMGTLISMGGGWTSL 404 +G GV P +G +I+ W+ L Sbjct: 150 MGEGVGP-AIGGMIAHYIHWSYL 171
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 58.9 bits (142), Expect = 6e-13 Identities = 28/157 (17%), Positives = 48/157 (30%), Gaps = 10/157 (6%) Query: 19 RDQVVEAATQHFGHYGYEKTTVSDLAKAIGFSKAYIYKFFDSKQAIGEVICSNRLAMIMA 78 R +++ A + F G T++ ++AKA G ++ IY F K + I + I Sbjct: 13 RQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGE 72 Query: 79 LVNSAISDAPTAS-----ERLRRLFRSLAEAGSDLFFHD---RKLYDIAAVAGRDQWPSA 130 L + P E L + S + K + +A Q Sbjct: 73 LELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQA--Q 130 Query: 131 AAHDERIRQLIQQILLEGRESGEFERKTPLDEAVQAI 167 I+Q L E+ A + Sbjct: 131 RNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIM 167
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 39.4 bits (92), Expect = 2e-05 Identities = 16/109 (14%), Positives = 39/109 (35%), Gaps = 10/109 (9%) Query: 68 VSGKVLERLVDTGQTVKRGEPLMRLDPVDLGLQ-AQAQQQAVAAAVARARQTADDEARNR 126 + V E +V G++V++G+ L++L + + Q + A + + R + Sbjct: 103 ENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIEL 162 Query: 127 DLVVAGAISASAY---------DRIKSLADTAKAELNAAQAQASVARNA 166 + + + Y R+ SL + + Q + + Sbjct: 163 NKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDK 211 Score = 35.6 bits (82), Expect = 2e-04 Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 2/83 (2%) Query: 178 GVVVDTLVEPGQVVSAGQPVVRLAKAGPREAIVHLPETLRPAMGDRAEARLYGDSARVIP 237 +V + +V+ G+ V G +++L G + +L A + + R S + Sbjct: 105 SIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLE--QTRYQILSRSIEL 162 Query: 238 ARLRLLSDAADPLTRTFEARYVL 260 +L L +P + VL Sbjct: 163 NKLPELKLPDEPYFQNVSEEEVL 185 Score = 30.6 bits (69), Expect = 0.011 Identities = 12/120 (10%), Positives = 36/120 (30%), Gaps = 7/120 (5%) Query: 99 LQAQAQQQAVAAAVARARQTADDEARNRDLVVAGAISASAYDRIKSLADTAKAELNAAQA 158 ++A + + + + + A+ +V D+++ + Sbjct: 262 VEAVNELRVYKSQLEQIESEIL-SAKEEYQLVTQLFKNEILDKLR----QTTDNIGLLTL 316 Query: 159 QASVARNASGYAVLLADADGVVVDTLV-EPGQVVSAGQPVVRLA-KAGPREAIVHLPETL 216 + + +V+ A V V G VV+ + ++ + + E + Sbjct: 317 ELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKD 376
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 447 bits (1152), Expect = e-142 Identities = 233/1045 (22%), Positives = 435/1045 (41%), Gaps = 59/1045 (5%) Query: 8 LSALAVRERAITLFLIILIGVAGTLSFFKLGRAEDPPFTVKQMTVISAWPGATAQEMQDQ 67 ++ +R L I++ +AG L+ +L A+ P ++V + +PGA AQ +QD Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 68 VAEPLEKRMQELK--WYDRSETYTRPGLAFTMVSFQDKTPPSQVQEEFYQARKKLSDAAK 125 V + +E+ M + Y S + G ++FQ T P Q Q + KL A Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTS-DSAGSVTITLTFQSGTDPDIAQV---QVQNKLQLATP 116 Query: 126 SLPAGVIGPMVNDEFSDVTFAL---FALKAKGEPQRLLVRDAES-LRQRLLHVPGVKKIN 181 LP V ++ E S ++ + F G Q + S ++ L + GV + Sbjct: 117 LLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQ 176 Query: 182 IIGEQ-AERIFVSFSHERLATLGIAPQDIFSALNDQNVLTPAGSIETSGP------QVFL 234 + G Q A RI++ + L + P D+ + L QN AG + + + Sbjct: 177 LFGAQYAMRIWLDA--DLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASI 234 Query: 235 RLDGAFDTLENIRNTPIVAR--GKTLKLQDVATVERGYEDPATFLVRNQGEPALLLGIVM 292 F E + G ++L+DVA VE G E+ R G+PA LGI + Sbjct: 235 IAQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVI-ARINGKPAAGLGIKL 293 Query: 293 RDGWNGLDLGKALDAETVRINQGMPLGVTLSKVTDQSVNIGSAVDEFMIKFFVALLVVML 352 G N LD KA+ A+ + P G+ + D + + ++ E + F A+++V L Sbjct: 294 ATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFL 353 Query: 353 VCFLSMG-WRVGVVVAAAVPLTLAMVFVVMEATGKNFDRITLGSLILALGLLVDDAIIAI 411 V +L + R ++ AVP+ L F ++ A G + + +T+ ++LA+GLLVDDAI+ + Sbjct: 354 VMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVV 413 Query: 412 EMMV-VKMEEGYDRIKASAYAWSHTAAPMLAGTLVTAVGFMPNGFAQSTAGEYTSNMFWI 470 E + V ME+ +A+ + S ++ +V + F+P F + G Sbjct: 414 ENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSIT 473 Query: 471 VGIALIASWIVAVVFTPYLGVKMLPEIKPVEGGHAAIYDTAHYNRFRRALAHVIARKWWV 530 + A+ S +VA++ TP L +L + + + F ++ H + Sbjct: 474 IVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKI 533 Query: 531 ---AGAVIAAFVVAILGMGA----VKKQFFPTSDRPEVLIEVQMPYGTSIEQTSATTAKV 583 G + + + + GM + F P D+ L +Q+P G + E+T +V Sbjct: 534 LGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQV 593 Query: 584 EAWLHQQDAAKIVTSYIGQGSPRFYLAMAPELPDPSFAKIVV-----LTESQEAREALKL 638 + + + A + + + G + + + + A + + + + EA+ Sbjct: 594 TDYYLKNEKANVESVFTVNG-----FSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIH 648 Query: 639 RIRQAVAD-----GLAPEARVRVTQLVFGPYSPFPVAYRVSGPAPDTLREIATRVETVMA 693 R + + + V + + +G D L + ++ + A Sbjct: 649 RAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELID--QAGLGHDALTQARNQLLGMAA 706 Query: 694 ASP-MMRTVNSDWGTRVPALHFSLDQDRLQAVGLTSSAVARQLQFLLSGIPVTSVREDIR 752 P + +V + +DQ++ QA+G++ S + + + L G V + R Sbjct: 707 QHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGR 766 Query: 753 SVDVMGRAAGDIRLDPAKIEGFTLVGAAGQRIPLSQAGVVEVRMEDPILRRRDRVPTITV 812 + +A R+ P ++ + A G+ +P S P L R + +P++ + Sbjct: 767 VKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEI 826 Query: 813 RGDIAQDLQPPDVSAGIMKALQPIIDSLPQGYRIEQAGSIEESAKATVALAPLFPIMIAV 872 +G+ A P S M ++ + LP G + G + + L I V Sbjct: 827 QGEAA----PGTSSGDAMALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVV 882 Query: 873 TLLIIILQVRSMSAMMMVFFTAPLGLIGVVPTLLLFNQPFGINALVGLIALSGILMRNTL 932 L + S S + V PLG++GV+ LFNQ + +VGL+ G+ +N + Sbjct: 883 VFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAI 942 Query: 933 ILIGQI-DHNEKQGLDPFHAVVEATVQRARPVLLTALAAILAFIPLTHSVFWGT-----L 986 +++ D EK+G A + A R RP+L+T+LA IL +PL S G+ + Sbjct: 943 LIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAV 1002 Query: 987 AYTLIGGTLGGTVMTLVFLPAMYSI 1011 ++GG + T++ + F+P + + Sbjct: 1003 GIGVMGGMVSATLLAIFFVPVFFVV 1027 Score = 84.1 bits (208), Expect = 2e-18 Identities = 91/524 (17%), Positives = 183/524 (34%), Gaps = 42/524 (8%) Query: 524 IARKWWVAGAVIAAFVVAILGMGAVKKQFFPTSDRPEVLIEVQMPYGTSIEQTSATTAKV 583 I R + I + L + + +PT P V + P + T + Sbjct: 6 IRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVTQVI 65 Query: 584 EAWLHQQDAAKIVTSY-IGQGSPRFYLAMAPELPDPSFAKIVVLTESQEAREALKLRIRQ 642 E ++ D ++S GS L DP A+ + + L Q Sbjct: 66 EQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGT-DPDIAQ-------VQVQNKL-----Q 112 Query: 643 AVADGLAPEARVRVTQLVFGPYSPFPVAYRVSGPAPDTLREIATRVETVMAASPMMRTVN 702 L E + + + S VA VS T +I+ V + + + +N Sbjct: 113 LATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVK--DTLSRLN 170 Query: 703 -----SDWGTRVPALHFSLDQDRLQAVGLT----SSAVARQLQFLLSGIPVTSVREDIRS 753 +G + A+ LD D L LT + + Q + +G + + Sbjct: 171 GVGDVQLFGAQY-AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQ 229 Query: 754 VDVMGRAAGDIRLDPAKIEGFTL-VGAAGQRIPLSQAGVVEVRMED-PILRRRDRVPTIT 811 ++ A + +P + TL V + G + L VE+ E+ ++ R + P Sbjct: 230 LNASIIAQTRFK-NPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAG 288 Query: 812 VRGDIAQDLQPPDVSAGIMKALQPIIDSLPQGYRIE----QAGSIEESAKATVALAPLFP 867 + +A D + I L + PQG ++ ++ S V LF Sbjct: 289 LGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVK--TLF- 345 Query: 868 IMIAVTLLIIILQVRSMSAMMMVFFTAPLGLIGVVPTLLLFNQPFGINALVGLIALSGIL 927 I + L++ L +++M A ++ P+ L+G L F + G++ G+L Sbjct: 346 EAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLL 405 Query: 928 MRNTLILIGQI-DHNEKQGLDPFHAVVEATVQRARPVLLTALAAILAFIPL-----THSV 981 + + ++++ + + L P A ++ Q ++ A+ FIP+ + Sbjct: 406 VDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGA 465 Query: 982 FWGTLAYTLIGGTLGGTVMTLVFLPAMYSIWFKIRPDRGSLPRN 1025 + + T++ ++ L+ PA+ + K + Sbjct: 466 IYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKG 509
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 871 bits (2252), Expect = 0.0 Identities = 328/571 (57%), Positives = 404/571 (70%), Gaps = 9/571 (1%) Query: 3 TMTRKEYAAMYGPTTGDAVRLGDTSLLAEVEFDHSVPGDECLHGGGKTLRDGMGLMPGHD 62 M+R YA M+GPT GD VRL DT L EVE D + G+E GGGK +RDGMG Sbjct: 4 RMSRAAYANMFGPTVGDKVRLADTELFIEVEKDFTTHGEEVKFGGGKVIRDGMGQSQVTR 63 Query: 63 SVDGALDMLICNALIIDPVIGIVKGDIGIKDGKIVAIGKAGNPQIMDGVHPQLICGVATT 122 GA+D +I NALI+D GIVK DIG+KDG+I AIGKAGNP + GV +I G T Sbjct: 64 E-GGAVDTVITNALILDHW-GIVKADIGLKDGRIAAIGKAGNPDMQPGV--TIIVGPGTE 119 Query: 123 VRDAEGLIVTPGGIDVHVHFDSAQLCDHALAAGLTTLIGGSLGPI--TVGIDCG-GEWNV 179 V EG IVT GG+D H+HF Q + AL +GLT ++GG GP T+ C G W++ Sbjct: 120 VIAGEGKIVTAGGMDSHIHFICPQQIEEALMSGLTCMLGGGTGPAHGTLATTCTPGPWHI 179 Query: 180 GKMLQAAEAWPINFGFLGRGNSSKPESLLGQLRGGCLGLKIHEDWGAMPAVIDTCLKVAD 239 +M++AA+A+P+N F G+GN+S P +L+ + GG LK+HEDWG PA ID CL VAD Sbjct: 180 ARMIEAADAFPMNLAFAGKGNASLPGALVEMVLGGATSLKLHEDWGTTPAAIDCCLSVAD 239 Query: 240 EYDFQVQLHTDTLNESGFLEDTLAAIGDRTIHMYHTEGAGGGHAPDIISVAGKSNCIPSS 299 EYD QV +HTDTLNESGF+EDT+AAI RTIH YHTEGAGGGHAPDII + G+ N IPSS Sbjct: 240 EYDVQVMIHTDTLNESGFVEDTIAAIKGRTIHAYHTEGAGGGHAPDIIRICGQPNVIPSS 299 Query: 300 TNPTNPYTVNTFDEHLDMIMVCHHLNPDVPEDVAFAESRVRPQTIAAEDILHDTGAISIL 359 TNPT PYTVNT EHLDM+MVCHHL+P +PED+AFAESR+R +TIAAEDILHD GA SI+ Sbjct: 300 TNPTRPYTVNTLAEHLDMLMVCHHLSPTIPEDIAFAESRIRKETIAAEDILHDIGAFSII 359 Query: 360 GSDSQGMGRINEVICRTWQLASKMKDQRGRLPEETTALGDNERIKRYIAKYTINAARVFG 419 SDSQ MGR+ EV RTWQ A KMK QRGRL EET DN R+KRYIAKYTIN A G Sbjct: 360 SSDSQAMGRVGEVAIRTWQTADKMKRQRGRLKEETGD-NDNFRVKRYIAKYTINPAIAHG 418 Query: 420 IDSYIGSLEPGKLADLVLWRPAFFGIKPELVVKGGFIVHAVMGDSAASLYTCEPLVMRPQ 479 + IGSLE GK ADLVLW PAFFG+KP++V+ GG I A MGD AS+ T +P+ RP Sbjct: 419 LSHEIGSLEVGKRADLVLWNPAFFGVKPDMVLLGGTIAAAPMGDPNASIPTPQPVHYRPM 478 Query: 480 WGAFGEAKQALSVNFVNRLAVEADTATRLGLKKQLLPAFGTR-TLRKSDMLHNDACPDIR 538 +GA+G ++ SV FV++ +++A A RLG+ K+L+ TR + K+ M+HN P I Sbjct: 479 FGAYGRSRTNSSVTFVSQASLDAGLAGRLGVAKELVAVQNTRGGIGKASMIHNSLTPHIE 538 Query: 539 VDPQTFDVYADGERLHCEPVSEVPLAQRYML 569 VDP+T++V ADGE L CEP + +P+AQRY L Sbjct: 539 VDPETYEVRADGELLTCEPATVLPMAQRYFL 569
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1133 bits (2931), Expect = 0.0 Identities = 509/1030 (49%), Positives = 703/1030 (68%), Gaps = 8/1030 (0%) Query: 1 MSLFFIKRPNFAWVLALFILLAGLMALPSLPVAQYPDVAPPQITITATYPGASAKVLVDS 60 M+ FFI+RP FAWVLA+ +++AG +A+ LPVAQYP +APP ++++A YPGA A+ + D+ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VTSVIEDELNGAKGMLYYESTSNSTGSAEINVTFVPGTNPDLAQVEVQNRIKKAEARLPQ 120 VT VIE +NG ++Y STS+S GS I +TF GT+PD+AQV+VQN+++ A LPQ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 121 TVLSQGLQVEQASSGFLLIYTLNYKDGAASKDTVALADYAARNVNNEISRVNGVGRLQFF 180 V QG+ VE++SS +L++ + ++D ++DY A NV + +SR+NGVG +Q F Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDD--ISDYVASNVKDTLSRLNGVGDVQLF 178 Query: 181 AAEAAMRVWIDPQKLVGFGLSIDDVNAAIRAQNVQVPAGSFGSSPASSLQELTATLAVKG 240 A+ AMR+W+D L + L+ DV ++ QN Q+ AG G +PA Q+L A++ + Sbjct: 179 GAQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQT 238 Query: 241 TLDNPEEFGRIVLRANEDGSAVHLSDVARVAVGSQDYSFESRLNGQRAVAGAVQLSPGAN 300 NPEEFG++ LR N DGS V L DVARV +G ++Y+ +R+NG+ A ++L+ GAN Sbjct: 239 RFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGAN 298 Query: 301 AIQTARAVEQRLTELSVNFPEGVGFSIPYDTSRFVDVAIDKVIYTLIEAMVLVFLVMFLF 360 A+ TA+A++ +L EL FP+G+ PYDT+ FV ++I +V+ TL EA++LVFLVM+LF Sbjct: 299 ALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLF 358 Query: 361 LQNIRYTLIPTIVVPVCLAGTLAIMYLMGFSVNMMTMFGMVLAIGILVDDAIVVVENVER 420 LQN+R TLIPTI VPV L GT AI+ G+S+N +TMFGMVLAIG+LVDDAIVVVENVER Sbjct: 359 LQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER 418 Query: 421 IMAEEGLSPAAATVKAMQQVSGAIFGITLVLAAVFLPLAFMGGSVGVIYQQFSLSLAVSI 480 +M E+ L P AT K+M Q+ GA+ GI +VL+AVF+P+AF GGS G IY+QFS+++ ++ Sbjct: 419 VMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAM 478 Query: 481 LFSGFLALTFTPALCATLLKPIPAGHHE-KRGFFGGFNRLFGKFTHRYERVSSSMIKRAG 539 S +AL TPALCATLLKP+ A HHE K GFFG FN F + Y ++ G Sbjct: 479 ALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTG 538 Query: 540 RYMLLYVGIVGLLGFFYLRLPESFVPVEDQGYLIIDVQLPPGATRSRTDLTAQLLENYML 599 RY+L+Y IV + +LRLP SF+P EDQG + +QLP GAT+ RT + +Y L Sbjct: 539 RYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYL 598 Query: 600 SREATG--AVTMLLGFSFSGMGENAGLAFPTLKDWSER-AKGQSAAEEAVAFNQHFAGLG 656 E +V + GFSFSG +NAG+AF +LK W ER SA + Sbjct: 599 KNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIR 658 Query: 657 DGTVMAVTPPPIDGLGTSGGFSLRLQDRAGLGREALLAARDKLLGEANGNP-KILYAMME 715 DG V+ P I LGT+ GF L D+AGLG +AL AR++LLG A +P ++ Sbjct: 659 DGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPN 718 Query: 716 GLAEAPQLRLSIDREKARALGVSFESINNALSTAFGSSVISDFANAGRQQRVVVQAEQSA 775 GL + Q +L +D+EKA+ALGVS IN +STA G + ++DF + GR +++ VQA+ Sbjct: 719 GLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKF 778 Query: 776 RMTPESVLKLYVPNSSGTLVPLGAFVSTHWEQGPVQIARYNGYPAFRISGDAAPGVSTGE 835 RM PE V KLYV +++G +VP AF ++HW G ++ RYNG P+ I G+AAPG S+G+ Sbjct: 779 RMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGD 838 Query: 836 AMAEIERIVSKLPQGIGYEWTGLSYQERVASGQAAGLFGLALLVVFLLLVALYESWAIPL 895 AMA +E + SKLP GIGY+WTG+SYQER++ QA L ++ +VVFL L ALYESW+IP+ Sbjct: 839 AMALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPV 898 Query: 896 VVMLIVPVGALGSVLAVTAVGMPNDVYFKVGLITIIGLAAKNAILIVEFAKELWD-QGHS 954 VML+VP+G +G +LA T NDVYF VGL+T IGL+AKNAILIVEFAK+L + +G Sbjct: 899 SVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG 958 Query: 955 LRDAALQAARLRFRPIVMTSLAFILGVVPLTLATGAGAASQRAIGTGVIGGMLSATLLGV 1014 + +A L A R+R RPI+MTSLAFILGV+PL ++ GAG+ +Q A+G GV+GGM+SATLL + Sbjct: 959 VVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018 Query: 1015 VLVPIFFVWV 1024 VP+FFV + Sbjct: 1019 FFVPVFFVVI 1028 Score = 83.0 bits (205), Expect = 4e-18 Identities = 65/331 (19%), Positives = 126/331 (38%), Gaps = 17/331 (5%) Query: 722 QLRLSIDREKARALGVSFESINNALSTA---FGSSVISDFANAGRQQRVVVQAEQSARMT 778 +R+ +D + ++ + N L + + QQ Q+ Sbjct: 183 AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFKN 242 Query: 779 PESVLKLYVP-NSSGTLVPLG--AFVSTHWEQGPVQIARYNGYPAFRISGDAAPGVSTGE 835 PE K+ + NS G++V L A V E IAR NG PA + A G + + Sbjct: 243 PEEFGKVTLRVNSDGSVVRLKDVARVELGGEN-YNVIARINGKPAAGLGIKLATGANALD 301 Query: 836 A----MAEIERIVSKLPQGIGYEW---TGLSYQERVASGQAAGLFGLALLVVFLLLVALY 888 A++ + PQG+ + T Q + + L VFL++ Sbjct: 302 TAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIML--VFLVMYLFL 359 Query: 889 ESWAIPLVVMLIVPVGALGSVLAVTAVGMPNDVYFKVGLITIIGLAAKNAILIVE-FAKE 947 ++ L+ + VPV LG+ + A G + G++ IGL +AI++VE + Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 948 LWDQGHSLRDAALQAARLRFRPIVMTSLAFILGVVPLTLATGAGAASQRAIGTGVIGGML 1007 + + ++A ++ +V ++ +P+ G+ A R ++ M Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 1008 SATLLGVVLVPIFFVWVLSVLRRKPHAQQAN 1038 + L+ ++L P +L + + H + Sbjct: 480 LSVLVALILTPALCATLLKPVSAEHHENKGG 510
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 41.0 bits (96), Expect = 6e-06 Identities = 16/100 (16%), Positives = 41/100 (41%), Gaps = 3/100 (3%) Query: 103 KAALSKAQGDLARTQATLFETQATVKRYESLVEIEAVSRQTFDTARSALQNAVAAKRSAE 162 + +A +L ++ L + ++ + + E + V++ + L+ Sbjct: 258 ENKYVEAVNELRVYKSQLEQIESEILSAKE--EYQLVTQLFKNEILDKLRQTTDNIGLLT 315 Query: 163 ADVETARLNLGYATVKAPISGRIGRAMV-TEGALVGQGET 201 ++ + ++AP+S ++ + V TEG +V ET Sbjct: 316 LELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAET 355 Score = 34.8 bits (80), Expect = 5e-04 Identities = 18/113 (15%), Positives = 36/113 (31%), Gaps = 1/113 (0%) Query: 58 PGRIEPV-RVAQVRARVAGIVLSRNFEEGADVKAGAVLFQIDPAPFKAALSKAQGDLART 116 G++ R +++ IV +EG V+ G VL ++ +A K Q L + Sbjct: 87 NGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQA 146 Query: 117 QATLFETQATVKRYESLVEIEAVSRQTFDTARSALQNAVAAKRSAEADVETAR 169 + Q + E E + + + + T + Sbjct: 147 RLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQ 199
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 35.0 bits (80), Expect = 9e-05 Identities = 15/143 (10%), Positives = 44/143 (30%), Gaps = 11/143 (7%) Query: 37 TLKDIAQAAGVSKATLNRFCGTRANLVELLLNHASDLMNQMVADADLQHAPPLEALQRLV 96 +L +IA+AAGV++ + +++L + + + ++ + + ++ R + Sbjct: 33 SLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELELEYQAKFPGDPLSVLREI 92 Query: 97 DNHLMHREMLVFLVFQWRPDSLDESSGGRRWLPYSDALDAFFL-----------RGQREG 145 H++ + + A L Sbjct: 93 LIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQRNLCLESYDRIEQTLKHCIEAK 152 Query: 146 LFRIDVGAAVLTEMFAALLSGMV 168 + D+ + +SG++ Sbjct: 153 MLPADLMTRRAAIIMRGYISGLM 175
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 88.5 bits (219), Expect = 5e-23 Identities = 62/216 (28%), Positives = 87/216 (40%), Gaps = 7/216 (3%) Query: 61 VFHGAIIYWLSQNPTPALPVVPPEIPPMTIEFSQPAPPVVETPPPTPEPVVQPVVEPPPP 120 V G + + Q P P + + +P V P P EP +P P PP Sbjct: 28 VVAGLLYTSVHQVIELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPP 87 Query: 121 VEDELAVKPPPPKPIPKPKPQPPKPVFKPAVKPVAKPVEQPPAPPVPAAPVAAPAPPAAP 180 E + ++ P PKP PKPKP K VKPV P PA P + A Sbjct: 88 KEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARP--TSSTATAA 145 Query: 181 APKPVTPASASAGYLRNPAPEYPSLAMRRGWEGTVLLRVHVLASGKPGEIQIQKSSGRDQ 240 KPVT ++ L P+YP+ A EG V ++ V G+ +QI + + Sbjct: 146 TSKPVTSVASGPRALSRNQPQYPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAKPANM 205 Query: 241 LDDAALAAVKRWSFVPAKQGDVAQDGWVSVPIDFKI 276 + A++RW + P K G + V I FKI Sbjct: 206 FEREVKNAMRRWRYEPGKPG-----SGIVVNILFKI 236
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 69.1 bits (169), Expect = 5e-17 Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 7/122 (5%) Query: 4 TARTILVVEDDAIVRMLIVDVLEELEYKVLEAEDATSALTFVADDSNHIDLLMTDQGLPD 63 T TILV +DDA +R ++ L Y V +A + ++A DL++TD +PD Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAG--DGDLVVTDVVMPD 59 Query: 64 MKGTALAKKVIELRPQLPVLFASGYSENIDVPPGM-----HSIGKPFSIDQLRDKVKSIL 118 L ++ + RP LPVL S + + + KPF + +L + L Sbjct: 60 ENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119 Query: 119 GN 120 Sbjct: 120 AE 121
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 77.2 bits (190), Expect = 1e-16 Identities = 36/115 (31%), Positives = 53/115 (46%), Gaps = 3/115 (2%) Query: 1049 KILVVDDDVRNIFALTSALEHKGAVVEIARNGLEAIARLNEVEDIDLVLMDVMMPEMDGY 1108 ILV DDD L AL G V I N + D DLV+ DV+MP+ + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAA-GDGDLVVTDVVMPDENAF 63 Query: 1109 EATIEIRKDPRWRKLPIIAVTAKAMKDDQERCLQAGSNDYLAKPIDLDRLFSLIR 1163 + I+K LP++ ++A+ + + G+ DYL KP DL L +I Sbjct: 64 DLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116 Score = 70.2 bits (172), Expect = 2e-14 Identities = 30/131 (22%), Positives = 54/131 (41%), Gaps = 5/131 (3%) Query: 778 QRRCILVIEDEVRFAQILYDLAHELGYDCLVAHAADDGFNLASRYTPDAILLDMRLPDHS 837 ILV +D+ +L GYD + A + + D ++ D+ +PD + Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 838 GLTVLQRLKELAPTRHIPVHVISVE---DRQEAALHMGAIGYAVKPTTREELKDVFAKLE 894 +L R+K+ P +PV V+S + A GA Y KP EL + + Sbjct: 62 AFDLLPRIKKARP--DLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119 Query: 895 AKLTQKVKRIL 905 A+ ++ ++ Sbjct: 120 AEPKRRPSKLE 130 Score = 63.7 bits (155), Expect = 2e-12 Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 2/81 (2%) Query: 903 RILLVEDDALQRDSIARLIGDDDIEITAVGFAQEALDLLRDHVYDCMIIDLKLPDMLGNE 962 IL+ +DDA R + + + ++ A + D ++ D+ +PD + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 963 LLKRMSMEDICAFPPVIVYTG 983 LL R+ PV+V + Sbjct: 65 LLPRIKKAR--PDLPVLVMSA 83
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 66.0 bits (161), Expect = 6e-14 Identities = 37/162 (22%), Positives = 62/162 (38%), Gaps = 11/162 (6%) Query: 7 AKLLIVDDLPENLLALEALIKRGDRIVYKALSADEALSLLLQHEFAMAILDVQMPGMNGF 66 A +L+ DD L + R V +A + + + + DV MP N F Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 67 ELAELMRSTEKTKSIPIVFVSAAGRELNYAFKGYESGAVDFLHKPLDIHAVKSKVNVFVD 126 +L ++ +P++ +SA A K E GA D+L KP D+ + Sbjct: 64 DLLPRIKKAR--PDLPVLVMSAQN-TFMTAIKASEKGAYDYLPKPFDL-------TELIG 113 Query: 127 LYRQRKAM-KIQVEELERSRQEQEALLKRLQSTQGELEHAIR 167 + + A K + +LE Q+ L+ R + Q R Sbjct: 114 IIGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLAR 155
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 65.2 bits (159), Expect = 2e-15 Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 10/121 (8%) Query: 26 VLIVEDEPLILMLLADYLSGEGYRVLKAENGEQAFEILATKPHLDLMITDYRLPGGVSGV 85 +L+ +D+ I +L LS GY V N + +A DL++TD +P + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAG-DGDLVVTDVVMPDE-NAF 63 Query: 86 QIAEPAIMLRPELKVIFISGYPAEILDSGSPI-ALKAPI---LAKPFTMDTLHTQIQKLL 141 + RP+L V+ +S + I A + L KPF + L I + L Sbjct: 64 DLLPRIKKARPDLPVLVMSAQN----TFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119 Query: 142 A 142 A Sbjct: 120 A 120
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 69.1 bits (169), Expect = 2e-14 Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 9/117 (7%) Query: 559 TVLIVEDDPAVRALVSEVLGELGYTFIEAGEATDAVPILESGRRIDLLISDVGLPGMNGR 618 T+L+ +DD A+R ++++ L GY A + +G DL+++DV +P N Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGD-GDLVVTDVVMPDENAF 63 Query: 619 QLAEIARQLRPELKVLFITGYAE----HAAVRGGFLDTGMQLITKPFAFDHLTSKVR 671 L ++ RP+L VL ++ A G D + KPF L + Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDY----LPKPFDLTELIGIIG 116 Score = 41.7 bits (98), Expect = 8e-06 Identities = 24/117 (20%), Positives = 47/117 (40%), Gaps = 7/117 (5%) Query: 26 RILDEAGYPATVARDVSELVRELGMGAGLAIIADEALRNADMTPLLELLGR-QPPWSDLP 84 + L AGY + + + L R + G G ++ D + D +LL R + DLP Sbjct: 21 QALSRAGYDVRITSNAATLWRWIAAGDGDLVVTD--VVMPDENA-FDLLPRIKKARPDLP 77 Query: 85 IVLLTHHGGPDHTPPARTGSLLGNVTFLERPFHPVTLVSLVMTAVRGRRRQYEARAR 141 +++++ A G +L +PF L+ ++ A+ +R+ Sbjct: 78 VLVMSAQNTFMTAIKAS---EKGAYDYLPKPFDLTELIGIIGRALAEPKRRPSKLED 131
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 36.7 bits (85), Expect = 1e-04 Identities = 24/126 (19%), Positives = 53/126 (42%), Gaps = 12/126 (9%) Query: 85 ALGTVTAM-NTINVRSRVAGELVKLYFQEGQMVKAGDLLAEIDP-------RSYQVALQQ 136 A G +T + ++ + ++ +EG+ V+ GD+L ++ Q +L Q Sbjct: 86 ANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQ 145 Query: 137 AEGTLATNQALLKNAQLDVQRYRGLFAE---DSIAKQTLDTAESLVNQYKGTIKTNQAAV 193 A Q L ++ +L+ L E +++++ + SL+ + T + NQ Sbjct: 146 ARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQ-NQKYQ 204 Query: 194 ADAKLN 199 + L+ Sbjct: 205 KELNLD 210 Score = 36.0 bits (83), Expect = 3e-04 Identities = 26/125 (20%), Positives = 52/125 (41%), Gaps = 15/125 (12%) Query: 134 LQQAEGTLATNQALLKNAQLDVQRYRGLFAEDSIAK--QTLDTAESLVNQYKGTIKTNQA 191 L+ + L ++ + +A+ + Q LF + + K QT D L + Sbjct: 268 LRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLE---------- 317 Query: 192 AVADAKLNLDFSRIRAPIAGRV-GLKQLDVGNLVAANDTTALAVITQTQPISVAFTLPEK 250 +A + S IRAP++ +V LK G +V +T + ++ + + V + K Sbjct: 318 -LAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETL-MVIVPEDDTLEVTALVQNK 375 Query: 251 DLSKV 255 D+ + Sbjct: 376 DIGFI 380
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 819 bits (2118), Expect = 0.0 Identities = 289/1037 (27%), Positives = 514/1037 (49%), Gaps = 28/1037 (2%) Query: 3 MSRLFILRPVATTLSMLAIVLAGLIAYTLLPVSALPQVDYPTIRVMTLYPGASPQVMTSS 62 M+ FI RP+ + + +++AG +A LPV+ P + P + V YPGA Q + + Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 63 VTAPLERQFGQMPGLTQMASTS-SGGASVITLRFSLEINMDVAEQQVQAAINAATNLLPT 121 VT +E+ + L M+STS S G+ ITL F + D+A+ QVQ + AT LLP Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 122 DLPAPPVYNKVNPADTPVLTLAITS--KTMLLPKLNDLVDTRMAQKISQISGVGMVSIAG 179 ++ + + + ++ S ++D V + + +S+++GVG V + G Sbjct: 121 EVQQQGIS-VEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG 179 Query: 180 GQRQAVRIKVNPEALAANSLNLSDVRTLISASNVNQPKGNFDGPTRVS------MLDAND 233 Q +RI ++ + L L DV + N G G + + A Sbjct: 180 AQYA-MRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQT 238 Query: 234 QLKSPEEYANLIL-AYKDGAPLRLKDVAEIVNGAENERLAAWANRSQAVLLNIQRQPGAN 292 + K+PEE+ + L DG+ +RLKDVA + G EN + A N A L I+ GAN Sbjct: 239 RFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGAN 298 Query: 293 VIEVVDRIKALLPSITENLPAGLDVVVLTDRTQTIRASVTDVQHELLIAIVLVVLVTFLF 352 ++ IKA L + P G+ V+ D T ++ S+ +V L AI+LV LV +LF Sbjct: 299 ALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLF 358 Query: 353 LRRFSATIIPSIAVPLSLVGTFGVMYLAGFSVNNLTLMAMTIATGFVVDDAIVMLENISR 412 L+ AT+IP+IAVP+ L+GTF ++ G+S+N LT+ M +A G +VDDAIV++EN+ R Sbjct: 359 LQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER 418 Query: 413 HI-EEGETPLQAALKGAKQIGFTLISLTLSLIAVLIPLLFMADVVGRLFREFAITLAVAI 471 + E+ P +A K QI L+ + + L AV IP+ F G ++R+F+IT+ A+ Sbjct: 419 VMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAM 478 Query: 472 LISLVVSLTLTPMMCARLLKREPRE--EEQSRFYRASGAWIDWLIDIYAGRLRWVLKHQP 529 +S++V+L LTP +CA LLK E E + F+ D ++ Y + +L Sbjct: 479 ALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTG 538 Query: 530 LTLLVALATLALTVLLYIVVPKGFFPVQDTGVIQGISEAPQSVSFAAMSQRQQALADIIL 589 LL+ +A V+L++ +P F P +D GV + + P + + + D L Sbjct: 539 RYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYL 598 Query: 590 KDPA--VVSLSSYIGVDGDNATLNSGRLLINLKPHGARD---LTASEVIQRLQPEVDKLS 644 K+ V S+ + G N+G ++LKP R+ +A VI R + E+ K+ Sbjct: 599 KNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIR 658 Query: 645 DIRLFMQPVQDLTIEDRVSRTQYQFSM---SSPDAELLTLWSEKLVDALGKRP-ELRDVA 700 D F+ P I + + T + F + + + LT +L+ + P L V Sbjct: 659 D--GFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVR 716 Query: 701 SDLQDKGLQVYLNIDRDAASRVGVTVANITDALYDAFGQRQISTIYTQASQYRVVLQAAS 760 + + Q L +D++ A +GV++++I + A G ++ + ++ +QA + Sbjct: 717 PNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADA 776 Query: 761 GSELGPAALEQIHVKTTDGAQVKLSSLARVEQRQAQLAIAHLGQFPAVMMSFNLAPDIAL 820 + P +++++V++ +G V S+ + P++ + AP + Sbjct: 777 KFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSS 836 Query: 821 GKAVKVIEEVEQEIGMPIGVQTQFQGAAEAFQASLSSTLLLILAAVVTMYIVLGVLYESY 880 G A+ ++E + + +P G+ + G + + S + L+ + V +++ L LYES+ Sbjct: 837 GDAMALMENLASK--LPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESW 894 Query: 881 IHPITILSTLPSAAVGALLALLISGNDLGMIAIIGIILLIGIVKKNAIMMIDFALDAERN 940 P++++ +P VG LLA + + ++G++ IG+ KNAI++++FA D Sbjct: 895 SIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEK 954 Query: 941 RSVAPEQAIYDAALLRFRPILMTTLAALFGAIPLMLASGSGAELRQPLGLVMVGGLLLSQ 1000 +A A +R RPILMT+LA + G +PL +++G+G+ + +G+ ++GG++ + Sbjct: 955 EGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSAT 1014 Query: 1001 VLTLFTTPVIYLYFDRL 1017 +L +F PV ++ R Sbjct: 1015 LLAIFFVPVFFVVIRRC 1031
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 798 bits (2062), Expect = 0.0 Identities = 287/1032 (27%), Positives = 510/1032 (49%), Gaps = 28/1032 (2%) Query: 7 FIRRPVATVLLSLAIMLLGAVSFRLLPVAPLPNMDFPVIVVSASLAGASPEVMASTVATP 66 FIRRP+ +L++ +M+ GA++ LPVA P + P + VSA+ GA + + TV Sbjct: 5 FIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVTQV 64 Query: 67 LERSLGSIAGVNTMTSNS-SQGTTRIILQFDLDRDINGAAREVQAAINASRNLLPSGMRS 125 +E+++ I + M+S S S G+ I L F D + A +VQ + + LLP ++ Sbjct: 65 IEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEVQQ 124 Query: 126 MPTYKKVNPSQAPIMVLSMTST--VLEKGQLYDLASTILSQSLSQVSGVGEVQIGGSSLP 183 S + +MV S + + D ++ + +LS+++GVG+VQ+ G+ Sbjct: 125 QGISV-EKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGAQY- 182 Query: 184 AVRIELEPQMLSQYGVSLDDVRTAITGANVRRPKGFV------EDDQHNWQVQANDQLET 237 A+RI L+ +L++Y ++ DV + N + G + Q N + A + + Sbjct: 183 AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFKN 242 Query: 238 AKDYSPLIIRY-KDGATLRLKDVAKVSDAVEDRYNSGFYNNDRAVLLVVNRQAGANIIET 296 +++ + +R DG+ +RLKDVA+V E+ N A L + GAN ++T Sbjct: 243 PEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDT 302 Query: 297 VAQIKAQLPALRAVLPASVSLNIAMDRSPVIKATLHEAEMTLLIAVVLVVMVVFLFLGSF 356 IKA+L L+ P + + D +P ++ ++HE TL A++LV +V++LFL + Sbjct: 303 AKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNM 362 Query: 357 RASLIPTLAVPVSLVGTFAIMHLFGFSLNNLSLMALILATGLVVDDAIVVLENISRHIH- 415 RA+LIPT+AVPV L+GTFAI+ FG+S+N L++ ++LA GL+VDDAIVV+EN+ R + Sbjct: 363 RATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMME 422 Query: 416 NGLDPMKAAFLGAKEVGFTLLSMNVSLVAVFISILFMGGLVESLFREFSITLSVSIIVSL 475 + L P +A ++ L+ + + L AVFI + F GG +++R+FSIT+ ++ +S+ Sbjct: 423 DKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSV 482 Query: 476 IVSLTLTPMLCARWLKPREAH---GENAFQRWSERVNDRMVAGYDRSLGWVMRHRRLTLL 532 +V+L LTP LCA LKP A + F W D V Y S+G ++ LL Sbjct: 483 LVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYLL 542 Query: 533 SLLITVVVNIALYVVVPKTFLPQQDTGQLMGFVRGDDGLSFSVMQPKMETFRLSILADPA 592 + V + L++ +P +FLP++D G + ++ G + Q ++ L + Sbjct: 543 IYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKNEK 602 Query: 593 VE-----SVAGFIGGSGGTNNAFMIVRLKPIAER---KLSAEKVVERLRKNMPHVPGGRL 644 +V GF N V LKP ER + SAE V+ R + + + G + Sbjct: 603 ANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDGFV 662 Query: 645 FLAPDQDLQLGGGREQTSSQYQYIVQSADLGSLRLWYPKIVA-ALKSIPELTAIDAREGR 703 + G + +L +++ A + L ++ Sbjct: 663 IPFNMPAIVELGTATGFDFELIDQ-AGLGHDALTQARNQLLGMAAQHPASLVSVRPNGLE 721 Query: 704 GAQQVTLVVNRDTAKRLGIDMNMVTAVLNNAYSQRQVSTIYDSLNQYKVVMEVNPKYAQD 763 Q L V+++ A+ LG+ ++ + ++ A V+ D K+ ++ + K+ Sbjct: 722 DTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRML 781 Query: 764 PVTLEQVQVITADGQRVPLSSIAHYERSLANDRVSHDGQFAAENISFDLAEGASLDKATV 823 P ++++ V +A+G+ VP S+ + R+ + I + A G S A Sbjct: 782 PEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAMA 841 Query: 824 AIERAIAAIGLPSDIISKMAGTANAFASTQKSQPWMILGALLAVYLVLGILYESYIHPLT 883 +E + LP+ I G + + P ++ + + V+L L LYES+ P++ Sbjct: 842 LMENLASK--LPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVS 899 Query: 884 ILSTLPSAGVGALLTIYVLGSEFSLISLLGLFLLIGVVKKNAIMMIDLALHLEREQGMTP 943 ++ +P VG LL + + + ++GL IG+ KNAI++++ A L ++G Sbjct: 900 VMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGV 959 Query: 944 QESIRSACLQRLRPILMTTMAAILGALPLLLSTAEGAEMRKPLGLTIIGGLIFSQVLTLY 1003 E+ A RLRPILMT++A ILG LPL +S G+ + +G+ ++GG++ + +L ++ Sbjct: 960 VEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIF 1019 Query: 1004 TTPVVYLYLDRL 1015 PV ++ + R Sbjct: 1020 FVPVFFVVIRRC 1031 Score = 94.9 bits (236), Expect = 7e-22 Identities = 74/506 (14%), Positives = 168/506 (33%), Gaps = 31/506 (6%) Query: 2 NLSAPFIRRPVATVLLSLAIMLLGAVSFRLLPVAPLPNMDFPVIVVSASL-AGASPEVMA 60 N + +L+ I+ V F LP + LP D V + L AGA+ E Sbjct: 528 NSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQ 587 Query: 61 STVAT----------PLERSLGSIAGVNTMTSNSSQGTTRIILQFDLDRDINGAAREVQA 110 + S+ ++ G + + G + L+ + Sbjct: 588 KVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLK---PWEERNGDENSAE 644 Query: 111 AINASRNLLPSGMRSMPTYKKVNPSQAPIMVLSMTSTVLEK------GQLYDLASTILSQ 164 A+ + +R P+ + + L L + +L Sbjct: 645 AVIHRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGM 704 Query: 165 SLSQVSGVGEVQIGGSS-LPAVRIELEPQMLSQYGVSLDDVRTAITGANVRRPKGFVEDD 223 + + + V+ G ++E++ + GVSL D+ I+ A D Sbjct: 705 AAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDR 764 Query: 224 QHNWQV--QANDQL-ETAKDYSPLIIRYKDGATLRLKDVAKVSDAVEDRYNSGFYNNDRA 280 ++ QA+ + +D L +R +G + + + Sbjct: 765 GRVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSH---WVYGSPRLERYNGL 821 Query: 281 VLLVVNRQAGANIIETVAQIKAQLPALRAVLPASVSLNIAMDRSPVIKATLHEAEMTLLI 340 + + +A + A + L + LPA + + S + + ++A + I Sbjct: 822 PSMEIQGEAAPGT--SSGDAMALMENLASKLPAGIGYDW-TGMSYQERLSGNQAPALVAI 878 Query: 341 AVVLVVMVVFLFLGSFRASLIPTLAVPVSLVGTFAIMHLFGFSLNNLSLMALILATGLVV 400 + V+V + + S+ + L VP+ +VG LF + ++ L+ GL Sbjct: 879 SFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSA 938 Query: 401 DDAIVVLENI-SRHIHNGLDPMKAAFLGAKEVGFTLLSMNVSLVAVFISILFMGGLVESL 459 +AI+++E G ++A + + +L +++ + + + G Sbjct: 939 KNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGA 998 Query: 460 FREFSITLSVSIIVSLIVSLTLTPML 485 I + ++ + ++++ P+ Sbjct: 999 QNAVGIGVMGGMVSATLLAIFFVPVF 1024 Score = 81.0 bits (200), Expect = 1e-17 Identities = 53/323 (16%), Positives = 118/323 (36%), Gaps = 14/323 (4%) Query: 707 QVTLVVNRDTAKRLGIDMNMVTAVLNNAYSQ----RQVSTIYDSLNQYKVVMEVNPKYAQ 762 + + ++ D + + V L Q + T Q + ++ + Sbjct: 183 AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF-K 241 Query: 763 DPVTLEQVQV-ITADGQRVPLSSIAHYERSLANDR--VSHDGQFAAENISFDLAEGASLD 819 +P +V + + +DG V L +A E N +G+ A + LA GA+ Sbjct: 242 NPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGK-PAAGLGIKLATGANAL 300 Query: 820 KATVAIERAIAAI--GLPSDIISKMAGTANAF--ASTQKSQPWMILGALLAVYLVLGILY 875 AI+ +A + P + F S + + +L LV+ + Sbjct: 301 DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVF-LVMYLFL 359 Query: 876 ESYIHPLTILSTLPSAGVGALLTIYVLGSEFSLISLLGLFLLIGVVKKNAIMMIDLALHL 935 ++ L +P +G + G + +++ G+ L IG++ +AI++++ + Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 936 EREQGMTPQESIRSACLQRLRPILMTTMAAILGALPLLLSTAEGAEMRKPLGLTIIGGLI 995 E + P+E+ + Q ++ M +P+ + + +TI+ + Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 996 FSQVLTLYTTPVVYLYLDRLRHR 1018 S ++ L TP + L + Sbjct: 480 LSVLVALILTPALCATLLKPVSA 502
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 87.8 bits (217), Expect = 8e-23 Identities = 78/262 (29%), Positives = 112/262 (42%), Gaps = 31/262 (11%) Query: 3 KVLIITGGSRGIGAATARLAASQGYRICINYLSDHAAAEKTAGQVRAMGARAITVQADVS 62 K+ ITG ++GIG A AR ASQG I + EK ++A A ADV Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHI-AAVDYNPEKLEKVVSSLKAEARHAEAFPADVR 67 Query: 63 NEDEIMRLFARVDSELGRVTHLVNNAGTLAQASRVEDMSEFRLLKMMMNNVVGPMLCSKH 122 + I + AR++ E+G + LVN AG L + +S+ N G S+ Sbjct: 68 DSAAIDEITARIEREMGPIDILVNVAGVLRPGL-IHSLSDEEWEATFSVNSTGVFNASRS 126 Query: 123 ALLRMLPAHGGQGGSIVNVSSLAA---RLGSAGEYVDYAASKGALDTFTIGLSKEVAAEN 179 M+ + GSIV V S A R A YA+SK A FT L E+A N Sbjct: 127 VSKYMMDR---RSGSIVTVGSNPAGVPRTSMAA----YASSKAAAVMFTKCLGLELAEYN 179 Query: 180 VRVNAVRPGFIFTDFH--------------ALSGDPFRVSKLEGALPMGRGGTAEEVAEA 225 +R N V PG TD S + F+ +P+ + ++A+A Sbjct: 180 IRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKT-----GIPLKKLAKPSDIADA 234 Query: 226 ILWLLSDNASYATGTFIDVAGG 247 +L+L+S A + T + V GG Sbjct: 235 VLFLVSGQAGHITMHNLCVDGG 256
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 30.0 bits (67), Expect = 0.002 Identities = 24/94 (25%), Positives = 31/94 (32%), Gaps = 25/94 (26%) Query: 32 PDEVEANQLNHRPRRAVVNRVDKEAATMTLPN---PVEV--------PDPN-----IDDP 75 P L P + AAT TL N V++ + N + Sbjct: 519 PASANTLLLVQTPLGS--------AATFTLANKDGKVDIGTYRYRLAANGNGQWSLVGAK 570 Query: 76 ALPEPVPEQEPPPSTPPPNETPVGDPPANAPPVT 109 A P P P +P P P P P + PA PP Sbjct: 571 APPAPKPAPQPGPQPPQP-PQPQPEAPAPQPPAG 603 Score = 28.1 bits (62), Expect = 0.007 Identities = 11/29 (37%), Positives = 12/29 (41%) Query: 78 PEPVPEQEPPPSTPPPNETPVGDPPANAP 106 P P P +PP P E P PPA Sbjct: 577 PAPQPGPQPPQPPQPQPEAPAPQPPAGRE 605
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 75.4 bits (185), Expect = 4e-17 Identities = 30/112 (26%), Positives = 37/112 (33%), Gaps = 6/112 (5%) Query: 488 PTPAPPPVEPAPEPAQPTPLPAPAPEPEPEPEPEPVPVPEPVPEPTPTPTPQPVPAPEPA 547 P PP P P P P PEP PEP PV P+P P P P+PV + Sbjct: 52 PADLEPPQAVQPPPEPVVE-PEPEPEPIPEPPK-EAPVVIEKPKPKPKPKPKPVKKVQEQ 109 Query: 548 PTPQPVPAPPPDPEPEPNSPPPVTPAAAL----PVPAIGTPPLPEPVRGAAP 595 P P P N+ P ++ P P + P Sbjct: 110 PKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRALSRNQP 161 Score = 72.7 bits (178), Expect = 3e-16 Identities = 42/130 (32%), Positives = 45/130 (34%), Gaps = 8/130 (6%) Query: 484 VIAPPTPAPP----PVEPAPEPAQPTPLPAPAPEPEPEPEPEPVPVPE---PVPEPTPTP 536 VI P PA P V PA P P P EPEPEPEP+P P PV P P Sbjct: 35 VIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKP 94 Query: 537 TPQPVPAPEPAPTPQPVPAPPPDPEPEPNSPPPVTPAAALPVPAIGTPPLPEPVRGAAPI 596 P+P P P QP P E P SP T A L A+ Sbjct: 95 KPKPKPKPVKKVQEQPKRDVKP-VESRPASPFENTAPARLTSSTATAATSKPVTSVASGP 153 Query: 597 ALYRSEVANY 606 Y Sbjct: 154 RALSRNQPQY 163 Score = 65.8 bits (160), Expect = 5e-14 Identities = 28/108 (25%), Positives = 38/108 (35%), Gaps = 16/108 (14%) Query: 485 IAPPTPAPPPVEPAPEPAQPTPLPAPAPEPEPEPEPEPVPVPEPVPEPTPTPTPQPVPAP 544 + PP EP PEP P AP +P+P+P+P P P + P +PV + Sbjct: 61 VQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESR 120 Query: 545 EPAP---------TPQPVPAPPPDP------EPEP-NSPPPVTPAAAL 576 +P T A P P + P PA A Sbjct: 121 PASPFENTAPARLTSSTATAATSKPVTSVASGPRALSRNQPQYPARAQ 168
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 36.7 bits (85), Expect = 1e-04 Identities = 25/118 (21%), Positives = 49/118 (41%), Gaps = 10/118 (8%) Query: 27 QIVSIVFYTFIAFLCIGLPIAVLPGYVHDQLGFSPLIA--GLTIASQYLATLLSRPFAGR 84 ++ I+ + + IGL + VLPG + D + + + A G+ +A L P G Sbjct: 6 PLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGA 65 Query: 85 ATDTLGSKRSIVFGLWGIVISGSMTLLATLLHEFATLSLSILIVARLFLGVSQGLIGV 142 +D G + ++ L G + ++ A L +L + R+ G++ V Sbjct: 66 LSDRFGRRPVLLVSLAGAAVDYAIMATAP--------FLWVLYIGRIVAGITGATGAV 115
>PF04183#IucA / IucC family Length = 580 Score = 176 bits (447), Expect = 5e-50 Identities = 85/389 (21%), Positives = 137/389 (35%), Gaps = 33/389 (8%) Query: 103 RCLAFAEFARQLLTACEHMTRASNDELLDQVLQ--SQHLTAAIVAHNMTGQHPA--PLSG 158 RC A+ LL + + S D + + +Q L + A ++ Sbjct: 66 RCADEPVLAQTLLMQLKQVLSMS-DATVAEHMQDLYATLLGDLQLLKARRGLSASDLINL 124 Query: 159 YLASEQGLWFGHPNHPAPKARLWPEHLAQETYAPEFQAQTALHLF-------------EV 205 Q L GHP K R A E YAPE+ LH E+ Sbjct: 125 NADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYANTFRLHWLAVKREHMIWRCDNEM 184 Query: 206 PLEGLRITSNGLSEAEVMSGFADQSRARPGHALICMHPVQAQLFMQDRRVQRLLELGDIS 265 + L + E S ++ + +HP Q Q + + E G + Sbjct: 185 DIHQLLTAAMDPQEFARFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAE-GRMV 243 Query: 266 DLGASGLLASPTASMRTWYIEG--HDYFIKGSLNVRITNCVRKNAWYELESTLIIDELFQ 323 LG G S+RT IK L + T+C R + + + Q Sbjct: 244 SLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASRWLQ 303 Query: 324 RLQQTRP-ETLGGLSTVAEP--GSMSWAPKGVSEADGHWFREQTGAILREN-FCRRSGED 379 ++ T G + EP G +S + ++E G I REN ++ Sbjct: 304 QVFATDATLVQSGAVILGEPAAGYVSHEGYAALARAPYRYQEMLGVIWRENPCRWLKPDE 363 Query: 380 CSVMAGTLFARDLRSRPLVHDFLQRFN-GAELEDQHLLDWFDEYQALLLSPVMALFFNHG 438 V+ TL D ++PL ++ R AE W + +++ P+ L +G Sbjct: 364 SPVLMATLMECDENNQPLAGAYIDRSGLDAE-------TWLTQLFRVVVVPLYHLLCRYG 416 Query: 439 IVMEPHLQNAVLIHDNGRPQQLLLRDFEG 467 + + H QN L G PQ++LL+DF+G Sbjct: 417 VALIAHGQNITLAMKEGVPQRVLLKDFQG 445
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 131 bits (332), Expect = 7e-36 Identities = 87/412 (21%), Positives = 176/412 (42%), Gaps = 19/412 (4%) Query: 9 WVVVNVLLGTLTVSLSNSSLNPALPAFMEAFRIGPLLATWIVAGFMTSMGMTMPLTSFLS 68 W+ + L + LN +LP F P W+ FM + + + LS Sbjct: 18 WLCILSFFSVLNEMV----LNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLS 73 Query: 69 QRIGRKRLYLWGVALFIGGSLLGALADSIA-LVITARVVQGIASGLMIPLSLAIIFSVYE 127 ++G KRL L+G+ + GS++G + S L+I AR +QG + L + ++ Sbjct: 74 DQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIP 133 Query: 128 KHERGRVTGLWSAAVMLAPALGPLCGSLMLEWFSWRSLFLMNVPIGLLALLLGVGVLPDA 187 K RG+ GL + V + +GP G ++ + W +L+ +P+ + + + L Sbjct: 134 KENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWS--YLLLIPMITIITVPFLMKLLKK 191 Query: 188 EPAERKPFDLIGYLLVASGIGLLMIAISRMHHAQALLDPVNQAMVLVALACLVAFVRVEL 247 E + FD+ G +L++ GI M+ + + + ++V++ + FV+ Sbjct: 192 EVRIKGHFDIKGIILMSVGIVFFMLFTTS----------YSISFLIVSVLSFLIFVKHIR 241 Query: 248 SRQAPLLNLRLFNLRGYRLSVIIAVVQSVGMFECLVLLPLLVQNVLGYNPIWTGLALLCT 307 P ++ L + + V+ + + + ++P ++++V + G ++ Sbjct: 242 KVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFP 301 Query: 308 ASFAS-LFGQWGGKALDRHGPRTVVAIGLLLTGVSTLALGMLKADAAIGVVFVLMMIRGA 366 + + +FG GG +DR GP V+ IG+ VS L L + + +++ + G Sbjct: 302 GTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLG- 360 Query: 367 GLGLSYMPVTTAGLNALPEPMVTQGAAMNNISRRLVASLAIVIASLWLEFRL 418 GL + ++T ++L + G ++ N + L I I L L Sbjct: 361 GLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSIPL 412
>PF04183#IucA / IucC family Length = 580 Score = 491 bits (1265), Expect = e-170 Identities = 163/596 (27%), Positives = 254/596 (42%), Gaps = 43/596 (7%) Query: 30 ERYQQVQRRVIGQLLQTLLYEAALPYRCEPLDDHRHRFAVAVSGGVEYRCEGLLSTSFEL 89 + + V RR++ ++L L YE + D + G ++R + Sbjct: 4 KDWDLVNRRLVAKMLSELEYEQVFHAESQGDDRYCINL-----PGAQWRFIAE-RGIWGW 57 Query: 90 IRLDHATLERVDSAGERSVPDLHLALTELLSPFKDSPHLTRFIQEIEQTQLKDLQA-RTQ 148 + +D TL D L + L ++LS + +Q++ T L DLQ + + Sbjct: 58 LWIDAQTLRCADEPVL--AQTLLMQLKQVLS--MSDATVAEHMQDLYATLLGDLQLLKAR 113 Query: 149 GYQPARPAHQLDVDALEQHFMDAHSYHPCYKSRIGFSLADNRHYGPEFATPFAVVWLAVA 208 A L+ D Q + H K R G+ Y PE+A F + WLAV Sbjct: 114 RGLSASDLINLNADR-LQCLLSGHPKFVFNKGRRGWGKEALERYAPEYANTFRLHWLAVK 172 Query: 209 KSSASVGHSRSMDFQAFIRQELGTQRWQEIARELAARGKSIDDYQLMPVHPWQWDNVTVS 268 + MD + + Q + ++ G ++ +PVHPWQW + Sbjct: 173 REHMIWRCDNEMDIHQLLTAAMDPQEFARFSQVWQENGLD-HNWLPLPVHPWQWQQKIAT 231 Query: 269 TFYPELASGELIYLGTSTDSYKAQQSIRTLANASQPQRPYVKLAMSMTNTSSTRILARHT 328 F + A G ++ LG D + AQQS+RTL NAS+ +KL +++ NTS R + Sbjct: 232 DFIADFAEGRMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRY 291 Query: 329 VLNGPIITDWLHQLIATDSTAQALNFVILGEVAGVSFD---YRHLPESRSAQTYGTLGAI 385 + GP+ + WL Q+ ATD+T VILGE A Y L + LG I Sbjct: 292 IAAGPLASRWLQQVFATDATLVQSGAVILGEPAAGYVSHEGYAALARAPYRYQ-EMLGVI 350 Query: 386 WRESLHQYLRDDEQAVPFNGLSHVENRYGDGQQTPFIDAWVNQYGL--KEWTRQLLQVTV 443 WRE+ ++L+ DE V L D P A++++ GL + W QL +V V Sbjct: 351 WRENPCRWLKPDESPVLMATLMEC-----DENNQPLAGAYIDRSGLDAETWLTQLFRVVV 405 Query: 444 PPIIHMLYAEGIGMESHGQNIVLIVKQGWPQRIALKDFHDGVRYSPAHLGRPELCPELVP 503 P+ H+L G+ + +HGQNI L +K+G PQR+ LKDF +R PE+ Sbjct: 406 VPLYHLLCRYGVALIAHGQNITLAMKEGVPQRVLLKDFQGDMRLVKEEF------PEMDS 459 Query: 504 LPASHAKLNR---NSFIITDDVNAVRDFSCDCFFFICLAEMAIFLRQQYQLDEALFWQMT 560 LP + ++I D F+ + L + + E F+Q+ Sbjct: 460 LPQEVRDVTSRLSADYLIHD---------LQTGHFVTVLRFISPLMVRLGVPERRFYQLL 510 Query: 561 ADVILDYQRAHPQHRDRFGLFDVFAPSYEVEELTKRRL-LGDGERRFRSVPNPLQT 615 A V+ DY + HPQ +RF LF +F P L +L D + R +PN L+ Sbjct: 511 AAVLSDYMKKHPQMSERFALFSLFRPQIIRVVLNPVKLTWPDLDGGSRMLPNYLED 566
>PF04183#IucA / IucC family Length = 580 Score = 170 bits (431), Expect = 1e-47 Identities = 112/507 (22%), Positives = 181/507 (35%), Gaps = 35/507 (6%) Query: 133 FLEVLRISVWQTALSLDHKVDE-QNLMAQDGATFFRTMEQWASLRDRPYHPLAKAKQGLN 191 + ++ T L + + L A D Q L P K ++G Sbjct: 91 TVAEHMQDLYATLLGDLQLLKARRGLSASDLINLNADRLQ-CLLSGHPKFVFNKGRRGWG 149 Query: 192 EQEYLQYQAEFARPVALNWVAVDKTLLQCGDGVEDLNASFPARYLLPENLQAQLDQEMQA 251 ++ +Y E+A L+W+AV + + E + P+ A+ Q Q Sbjct: 150 KEALERYAPEYANTFRLHWLAVKREHMIWRCDNEMDIHQLLTAAMDPQEF-ARFSQVWQE 208 Query: 252 RGIAGSHVALPVHPWQFEHVLQVQLGDAFAKGDCQRLDFNQAQVHATSSLRSMTPCFN-S 310 G+ + + LPVHPWQ++ + FA+G L Q A SLR++T Sbjct: 209 NGLDHNWLPLPVHPWQWQQKIATDFIADFAEGRMVSLGEFGDQWLAQQSLRTLTNASRRG 268 Query: 311 ADYLKLPMAIYSLGASRYLPAVKMINGGLSEKLLRQVVDKDETLSRS-LHLCDERKWWAF 369 +KLP+ IY+ R +P + G L+ + L+QV D TL +S + E Sbjct: 269 GLDIKLPLTIYNTSCYRGIPGRYIAAGPLASRWLQQVFATDATLVQSGAVILGEPAAGYV 328 Query: 370 -MPPQATLFDEGPRH---LSAMVRGYPAALLDDPECRLLPMAALGTPLPGSNRHFFDEWM 425 A L R+ L + R P L P+ + MA L N+ ++ Sbjct: 329 SHEGYAALARAPYRYQEMLGVIWRENPCRWL-KPDESPVLMATLMECDEN-NQPLAGAYI 386 Query: 426 DYRELPRNQASVLTLFRELSHSFFDINLRMF-RLGMLGEVHGQNAVMVWKAGQAQGLLLR 484 D L T +L + R G+ HGQN + K G Q +LL+ Sbjct: 387 DRSGLD-----AETWLTQLFRVVVVPLYHLLCRYGVALIAHGQNITLAMKEGVPQRVLLK 441 Query: 485 D-HDSLRIFVPWLERNGMHDPEYRIKKGHANTLYHDRPED-LLFWLQTLGIQVNVRAIMD 542 D +R+ PE + D L+ LQT G V V + Sbjct: 442 DFQGDMRLVKEEF-------PEMDSLPQEVRDVTSRLSADYLIHDLQT-GHFVTVLRFIS 493 Query: 543 TLAQVYDVPVTALWTVLRDVLDNLITTIEFDDEARGMIRQQLFEAPNWPQKLLLTP---- 598 L VP + +L VL + + + LF P +++L P Sbjct: 494 PLMVRLGVPERRFYQLLAAVLSDYMKK--HPQMSERFALFSLF-RPQ-IIRVVLNPVKLT 549 Query: 599 MIERAGGPGSMPFGKGEVVNPFHRLRR 625 + GG +P ++ NP + + Sbjct: 550 WPDLDGGSRMLPNYLEDLQNPLWLVTQ 576
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 80.4 bits (198), Expect = 1e-19 Identities = 75/304 (24%), Positives = 115/304 (37%), Gaps = 45/304 (14%) Query: 7 PHPSRRTVLRLSLALLAL-----PGIARAAPLRVVTLFQGASDTAVALGVTPCGVVDS-- 59 P SRR +L L A P R+V L + +ALG+ P GV D+ Sbjct: 5 PLISRRRLLTAMALSPLLWQMNTAHAAAIDPNRIVALEWLPVELLLALGIVPYGVADTIN 64 Query: 60 ---WSEKPMYRYLRPALAAVPHVGLETQPSLEDIVLLKPDLIVASRFRHQRIAPLLEQIG 116 W +P P +V VGL T+P+LE + +KP +V S P E + Sbjct: 65 YRLWVSEP------PLPDSVIDVGLRTEPNLELLTEMKPSFMVWS----AGYGPSPEMLA 114 Query: 117 MVLMLEEVFEF----------KRTLAMMGVALQRQQLAMDLLGQWQQRVAAVRGQLQAKF 166 + F F +++L M L Q A L Q++ + +++ + K Sbjct: 115 RIAPG-RGFNFSDGKQPLAMARKSLTEMADLLNLQSAAETHLAQYEDFIRSMKPRF-VKR 172 Query: 167 AGRWPITVSVLDIREDHIRSYLPASFAGSVLSELGF--AWTPAAREASGVSLKLSSKESL 224 R + +++D R H+ + P S +L E G AW E + S + L Sbjct: 173 GARPLLLTTLIDPR--HMLVFGPNSLFQEILDEYGIPNAWQ---GETNFWGSTAVSIDRL 227 Query: 225 PVVDADLFFVFQRADSNAAQHTYDKLVQNPFWQQLRAVRDGQVWRVDAIAWSLSGGILGA 284 F +S L+ P WQ + VR G+ RV A+ W G L A Sbjct: 228 AAYKDVDVLCFDHDNSKDMD----ALMATPLWQAMPFVRAGRFQRVPAV-W-FYGATLSA 281 Query: 285 NRML 288 + Sbjct: 282 MHFV 285
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 28.6 bits (64), Expect = 0.027 Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 25/100 (25%) Query: 34 ARALLDDAVCEQLLGE---------LGPVIGSPTQAITASLLAKRFSFLSTGA---CLYA 81 A+A++ + ++LL E +G ++ P+ A+ A+L AK F S G Y Sbjct: 403 AKAIMQEEK-DKLLSEGVDVSDSIEVGIMVEIPSTAVAANLFAKEVDFFSIGTNDLIQYT 461 Query: 82 MSV----------YDKG--LTLSLDNSVIEYAHDDGLWTS 109 M+ Y L L + VI+ AH +G W Sbjct: 462 MAADRMNERVSYLYQPYHPAILRLVDMVIKAAHSEGKWVG 501
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 49.8 bits (119), Expect = 9e-09 Identities = 32/191 (16%), Positives = 67/191 (35%), Gaps = 46/191 (24%) Query: 96 LQNTLRQSQVNEQNLIAQKDAAVAQLKDAKAIYQ-------RYKQLRADDAIS------- 141 QN Q ++N A++ +A++ + + + + L AI+ Sbjct: 198 WQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQ 257 Query: 142 QKDFDTAQSDFEVRSANLRSLEAQVRDARIQI---------------------------- 173 + + A ++ V + L +E+++ A+ + Sbjct: 258 ENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLE 317 Query: 174 -ETARINLGYTRIVAPISGDVVGI-VTQEGQTVIASQLTPVILKLADLDTMTVKAQVSEA 231 + I AP+S V + V EG V ++ +++ + + DT+ V A V Sbjct: 318 LAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAE--TLMVIVPEDDTLEVTALVQNK 375 Query: 232 DVIHITPGQEV 242 D+ I GQ Sbjct: 376 DIGFINVGQNA 386 Score = 40.2 bits (94), Expect = 1e-05 Identities = 24/182 (13%), Positives = 63/182 (34%), Gaps = 25/182 (13%) Query: 5 KFRKVLIVVVLLVLAAGIAYSVQSPEKAPEYLTAKVERTDIENSVLASGVLQGIKQV-DV 63 + +++ ++ L SV +E A+G L + ++ Sbjct: 55 RRPRLVAYFIMGFLVIAFILSVLGQ---------------VEIVATANGKLTHSGRSKEI 99 Query: 64 GAQVSGQLKSLKVNLGDKVKQGQWLAEIDPVV-------LQNTLRQSQVNEQNLIAQKDA 116 + +K + V G+ V++G L ++ + Q++L Q+++ + + Sbjct: 100 KPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRS 159 Query: 117 A-VAQLKDAKAIYQRYKQLRADDAISQKDFDTAQSDFEVRSANLRSLEAQVRDARIQIET 175 + +L + K + Y Q +++ + + + F E + R + T Sbjct: 160 IELNKLPELKLPDEPYFQNVSEEEVL-RLTSLIKEQFSTWQNQKYQKELNLDKKRAERLT 218 Query: 176 AR 177 Sbjct: 219 VL 220
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 35.6 bits (82), Expect = 3e-04 Identities = 18/83 (21%), Positives = 38/83 (45%), Gaps = 4/83 (4%) Query: 87 GDQVKKGQVLATLADDSVLAEENKQKSAAAQATAQLQEARSNARRAASVGQSGALSEQKL 146 G+ V+KG VL L ++ AE + K+ ++ A+L++ R + + L E KL Sbjct: 115 GESVRKGDVLLKL--TALGAEADTLKTQSSLLQARLEQTRYQILSRSI--ELNKLPELKL 170 Query: 147 EEYRVKVQTAEADLASANADLRS 169 + +E ++ + ++ Sbjct: 171 PDEPYFQNVSEEEVLRLTSLIKE 193 Score = 35.2 bits (81), Expect = 4e-04 Identities = 26/223 (11%), Positives = 73/223 (32%), Gaps = 11/223 (4%) Query: 22 LSGRAEPPPAAAAPPATSLTVEAVQPRREDWPQERVASGALAPWQEAVISAETGSLRIAS 81 L EP + ++ + W ++ + A RI Sbjct: 168 LKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLA--RINR 225 Query: 82 LKADIGDQVKKGQVLATLADDSVLAEEN--KQKSAAAQATAQLQEARSNARRA-ASVGQS 138 + + + ++L +A+ +Q++ +A +L+ +S + + + + Sbjct: 226 YENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSA 285 Query: 139 GALSEQKLEEYRVKVQT----AEADLASANADLRSIRIKLAQTRIVAVDDGIISGRKAL- 193 + + ++ ++ ++ +L + + I A + K Sbjct: 286 KEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHT 345 Query: 194 LGDVVSAGSEMFRMI-RDGRIEWQAELDAQQLPGVKAGQLARV 235 G VV+ + ++ D +E A + + + + GQ A + Sbjct: 346 EGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAII 388
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 622 bits (1605), Expect = 0.0 Identities = 248/1036 (23%), Positives = 470/1036 (45%), Gaps = 49/1036 (4%) Query: 3 ISALSIRYPVPAVMLFLLLTLFGFLGFERLGIQDFPDTDLPAVVISASLEGAAPEQLETE 62 ++ IR P+ A +L ++L + G L +L + +P PAV +SA+ GA + ++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 63 VARKLEDKLTSLRLLKHVTTQIT-EGSVLINVIFDIDKDGNEALNEVRNAVDSAAAELPA 121 V + +E + + L ++++ GSV I + F D + A +V+N + A LP Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 122 NLDTPSVTRLTTNTTALLTY--VVDAPRMDEEALSWFVDNELSKQLLTVRGVAKISRVGG 179 + ++ ++++ L+ V D P ++ +S +V + + L + GV + G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 180 VDREVQVDLDPALMAGLGLSVTDIADRLRAMQKDNSGGQGDLG---SGQQ---ALRVLGG 233 +++ LD L+ L+ D+ ++L+ + GQ GQQ ++ Sbjct: 181 -QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 234 IDDPAALGAIRIPVS-DGRMLAVQQLATVRDTHAERNTLAYRDGKPVIGFQVIRSLGFSD 292 +P G + + V+ DG ++ ++ +A V N +A +GKP G + + G + Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 293 VGVTRDLRQAVNEFAIQHP-DVRIEEASNAVEPVMENYRGSMALLYEGMLLAVLVVWWFL 351 + + ++ + E P +++ + V + + L+E ++L LV++ FL Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 352 RDWRATIIVATALPLSIIPTFGVMYFAGFSLNTVSLLALALVIGILVDDAIVEVENIARH 411 ++ RAT+I A+P+ ++ TF ++ G+S+NT+++ + L IG+LVDDAIV VEN+ R Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 412 LRMGKT-PRQAAIEASDEIGLAVLATTVTLVAVFLPTAFMGGISGKLFRQFGVTASAALM 470 + K P++A ++ +I A++ + L AVF+P AF GG +G ++RQF +T +A+ Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 471 FSLLVARLLTPMMAAYLLKPRPHGEHD-------------SGLMRRYLGWIHTSLSRRKT 517 S+LVA +LTP + A LLKP H+ + Y + L Sbjct: 480 LSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539 Query: 518 TMAIVGALFIGSLALIPLLPTSFLPAQDIASSTVSLELPPGSSLAQTGEVALQAEKRL-- 575 + I + G + L LP+SFLP +D ++LP G++ +T +V Q Sbjct: 540 YLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLK 599 Query: 576 RAIPEVAHVFIAAGSGETGGAGDRDAKLTVDLLPRDQRALKQSQVEASMRESLRSLPGV- 634 V VF G G V L P ++R ++ EA + + L + Sbjct: 600 NEKANVESVFTVNGFS-FSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIR 658 Query: 635 ----------RVTVGGDASGERLDIVLASDDG--DLLERTAAALEPQLRQIKGIGNVTSS 682 + G A+G +++ + G L + L + + +V + Sbjct: 659 DGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPN 718 Query: 683 AAVQRPEIQMRPDVVRAAEQGISSQDIADTLRMATYGEYSSSLGKINLSQRQVNVRVRMQ 742 + ++ D +A G+S DI T+ A G Y + R + V+ Sbjct: 719 GLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTY---VNDFIDRGRVKKLYVQAD 775 Query: 743 PQVRTDLQSLGQLRVTGRDGQ-IALASLGELSMGSGPAQIDRIDRLRNITLSIEL-NGSN 800 + R + + +L V +G+ + ++ G +++R + L ++ + E G++ Sbjct: 776 AKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTS 835 Query: 801 LGEVMEQARQLPVMQNLPAQVKLVEQGELQLMSELFGNFSLAMAVGVFCIYAVLVLLFHD 860 G+ M L LPA + G +A+ ++ L L+ Sbjct: 836 SGDAMALMENL--ASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYES 893 Query: 861 FMQPLTILSALPLSLGGALLALLIGGMSFSMASVIGLLMLMGIVTKNSILLVEYAIMARR 920 + P++++ +PL + G LLA + + ++GLL +G+ KN+IL+VE+A Sbjct: 894 WSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLME 953 Query: 921 APTVSRYDALIDACHKRARPILMTTIAMGAGMLPTALGWGGESGFRQPMAVVVIGGLLAS 980 +A + A R RPILMT++A G+LP A+ G SG + + + V+GG++++ Sbjct: 954 KEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSA 1013 Query: 981 TVLSLLVVPVIFTYVD 996 T+L++ VPV F + Sbjct: 1014 TLLAIFFVPVFFVVIR 1029 Score = 88.0 bits (218), Expect = 1e-19 Identities = 80/517 (15%), Positives = 167/517 (32%), Gaps = 41/517 (7%) Query: 2 NISALSIRYPVPAVMLFLLLTLFGFLGFERLGIQDFPDTDLPAVVISASL-EGAAPEQLE 60 N + ++++ L+ + F RL P+ D + L GA E+ + Sbjct: 528 NSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQ 587 Query: 61 TEVARKLEDKLTSLRLLKHVTTQITEGSV--------LINVIFDIDKDGNEALNEVRNAV 112 + + + L + + + S + V ++ N N + Sbjct: 588 KVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVI 647 Query: 113 DSAAAELPANLDT------PSVTRLTTNTTALLTYVVDAPRMDEEALSWFVDNELSKQLL 166 A EL D T ++D + +AL+ + L Sbjct: 648 HRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQ 707 Query: 167 TVRGVAKISRVGGVDR-EVQVDLDPALMAGLGLSVTDIADRLRAMQKDNSGGQGDLGSGQ 225 + + G D + ++++D LG+S++DI + D Sbjct: 708 HPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTAL--GGTYVNDFIDRG 765 Query: 226 QALRVLGGID-----DPAALGAIRIPVSDGRMLAVQQLATVRDTHAERNTLAYRDGKPVI 280 + ++ D P + + + ++G M+ T + L +G P + Sbjct: 766 RVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGS-PRLERYNGLPSM 824 Query: 281 GFQVIRSLGFSDVGVTRDLRQAVNEFAIQHPD-VRIEEASNAVEPVMENYRGSMALLYEG 339 Q + G S + D + A + P + + + R S Sbjct: 825 EIQGEAAPGTS----SGDAMALMENLASKLPAGIGYDWTGMS-----YQERLSGNQAPAL 875 Query: 340 MLLAVLVVWWFL----RDWRATIIVATALPLSIIPTFGVMYFAGFSLNTVSLLALALVIG 395 + ++ +VV+ L W + V +PL I+ + ++ L IG Sbjct: 876 VAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIG 935 Query: 396 ILVDDAIVEVENI-ARHLRMGKTPRQAAIEASDEIGLAVLATTVTLVAVFLPTAFMGGIS 454 + +AI+ VE + GK +A + A +L T++ + LP A G Sbjct: 936 LSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAG 995 Query: 455 GKLFRQFGVTASAALMFSLLVARLLTPMMAAYLLKPR 491 G+ ++ + L+A P+ +++ R Sbjct: 996 SGAQNAVGIGVMGGMVSATLLAIFFVPVF--FVVIRR 1030
>cloacin#Cloacin signature. Length = 551 Score = 29.3 bits (65), Expect = 0.007 Identities = 30/129 (23%), Positives = 48/129 (37%), Gaps = 17/129 (13%) Query: 48 DQVRIREQELTDARAENASFRDVYNALQEQRQSTSKSLAEQQRQQATLDSSMSKLLSQLK 107 D+ R+QE A+ R+ A E Q+ ++ +A Q +QA + S+L Sbjct: 301 DEENRRQQEWDATHPVEAAERNYERARAELNQA-NEDVARNQERQAKAVQVYNSRKSELD 359 Query: 108 ARHADKAQVQQQIADLEK-------------QMADKKKAVASTDPAVVEARQQELKALQQ 154 A + A +I + QMA K A TD V +Q A + Sbjct: 360 AANKTLADAIAEIKQFNRFAHDPMAGGHRMWQMAGLKAQRAQTD---VNNKQAAFDAAAK 416 Query: 155 KVSRLQLSL 163 + S +L Sbjct: 417 EKSDADAAL 425
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1193 bits (3087), Expect = 0.0 Identities = 619/1034 (59%), Positives = 776/1034 (75%), Gaps = 6/1034 (0%) Query: 1 MARFFIDRPIFAWVIAICIMFAGGLSISQLPLEQYPDIAPPTVKISATYTGASAKTVEDS 60 MA FFI RPIFAWV+AI +M AG L+I QLP+ QYP IAPP V +SA Y GA A+TV+D+ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VTQVIEQQMKGLDRLTYMSASSSSAGSASISLTFAAGTDPDVAQMQVQNKLQQAESRLPQ 120 VTQVIEQ M G+D L YMS++S SAGS +I+LTF +GTDPD+AQ+QVQNKLQ A LPQ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 121 SVQSEGLTVTKGSSDFLMLVALASDNESVTGTQIGDYISSTLLDQLSRVDGVGDVQTLGS 180 VQ +G++V K SS +LM+ SDN T I DY++S + D LSR++GVGDVQ G+ Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 181 GYAMRIWLDPARMEKYSLMPSDISSALEAQNTEVSAGQLGALPAVEGQQLNATISARSKL 240 YAMRIWLD + KY L P D+ + L+ QN +++AGQLG PA+ GQQLNA+I A+++ Sbjct: 181 QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240 Query: 241 QTPEQFENVVVKSSSDGAVVLLRDVARVELGSESYDINSALNGRPAAAMGIQLASGANAL 300 + PE+F V ++ +SDG+VV L+DVARVELG E+Y++ + +NG+PAA +GI+LA+GANAL Sbjct: 241 KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300 Query: 301 SVGEAIKAKLKELEPFYPAQMQLKTVIAYDTTPFVSLSIKEVVKSLGEAIVLVVLIMFLF 360 +AIKAKL EL+PF+P M++ + YDTTPFV LSI EVVK+L EAI+LV L+M+LF Sbjct: 301 DTAKAIKAKLAELQPFFPQGMKV--LYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLF 358 Query: 361 MQNLRATLIPAITVPVVLLGTFGVLALFGYSINTLTMFAMVLAIGLLVDDAIVVVENVER 420 +QN+RATLIP I VPVVLLGTF +LA FGYSINTLTMF MVLAIGLLVDDAIVVVENVER Sbjct: 359 LQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER 418 Query: 421 VMDEEHLSPLEATRKSMDEITSALIGIALVLSAVFIPMAFFSGSTGIIYRQFSVTIVSAM 480 VM E+ L P EAT KSM +I AL+GIA+VLSAVFIPMAFF GSTG IYRQFS+TIVSAM Sbjct: 419 VMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAM 478 Query: 481 LLSVLVAMTLTPALCATMLKASDAQLHAKRGGFFGWFNRTFDRSADRYQRGVSGVIEHRV 540 LSVLVA+ LTPALCAT+LK A+ H +GGFFGWFN TFD S + Y V ++ Sbjct: 479 ALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTG 538 Query: 541 KGLLVYALVLVVMAVGYVSLPTSFLPDEDQGALMAQIQLPVGATDSRTQAVMRQFEAYML 600 + LL+YAL++ M V ++ LP+SFLP+EDQG + IQLP GAT RTQ V+ Q Y L Sbjct: 539 RYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYL 598 Query: 601 K--QPEVEALISISGLGMGGNSQNTARAFIKLKDWSERSGKEQGAAQVAQRATLALASIG 658 K + VE++ +++G G +QN AF+ LK W ER+G E A V RA + L I Sbjct: 599 KNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIR 658 Query: 659 DASVFVMQPPAVRGLGQSSGFDVQLKDLGGVGHEALVAAREQFIELARKD-SSMLGVRSN 717 D V PA+ LG ++GFD +L D G+GH+AL AR Q + +A + +S++ VR N Sbjct: 659 DGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPN 718 Query: 718 GLDDTPQLKVTIDDRKAGALSLSTSDINSTLSTALGGSYINDFLNQGRVKKVYVQGEAAS 777 GL+DT Q K+ +D KA AL +S SDIN T+STALGG+Y+NDF+++GRVKK+YVQ +A Sbjct: 719 GLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKF 778 Query: 778 RMQSADLDHWFVRNSNDEMVPFSSFASSSWSYGSPLLERYNGSSSLEVVGDPAPGVSSGT 837 RM D+D +VR++N EMVPFS+F +S W YGSP LERYNG S+E+ G+ APG SSG Sbjct: 779 RMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGD 838 Query: 838 AMDAVEAIIKQLPEGIGYEWTGQSYQLRLSGSQAPMLYAISVLFVFLCLAALYESWSVPF 897 AM +E + +LP GIGY+WTG SYQ RLSG+QAP L AIS + VFLCLAALYESWS+P Sbjct: 839 AMALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPV 898 Query: 898 SVMLVVPLGVVGAVLATRISGLSNDVYFQVGLLTTVGLAAKNAILIVEFAKHLQE-QGKS 956 SVMLVVPLG+VG +LA + NDVYF VGLLTT+GL+AKNAILIVEFAK L E +GK Sbjct: 899 SVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG 958 Query: 957 LHEATLLAARQRLRPILMTSLAFMFGVLPLALSSGAGSAGRNAIGTGVLGGMFSATVLGI 1016 + EATL+A R RLRPILMTSLAF+ GVLPLA+S+GAGS +NA+G GV+GGM SAT+L I Sbjct: 959 VVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018 Query: 1017 FLVPLFFVEVRRRF 1030 F VP+FFV +RR F Sbjct: 1019 FFVPVFFVVIRRCF 1032
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 43.7 bits (103), Expect = 8e-07 Identities = 24/141 (17%), Positives = 54/141 (38%), Gaps = 5/141 (3%) Query: 69 EIRPQVSGIVQQRLFVEGAEIKAGQPLYQLDSATYQAALAESQATLAKSRTTLKSAQA-- 126 EI+P + IV++ + EG ++ G L +L + +A ++Q++L ++R Q Sbjct: 98 EIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILS 157 Query: 127 TAKRDVQLARIDAISQ---QDKEDAEASLLTAAAEVKVAEADVQTARINLAYTRITAPIS 183 + +L + + Q+ + E LT+ + + + Q + L + A Sbjct: 158 RSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERL 217 Query: 184 GRIETSTVTPGALVVAQQDTA 204 + V + Sbjct: 218 TVLARINRYENLSRVEKSRLD 238 Score = 42.1 bits (99), Expect = 3e-06 Identities = 27/174 (15%), Positives = 56/174 (32%), Gaps = 7/174 (4%) Query: 50 RSQSLTTELAGRTKAFMVAEIRPQVSGIVQQRLFVEGAEIKAGQPLYQLDSATYQAALAE 109 ++Q EL K + +++ VE + + L + A L + Sbjct: 199 QNQKYQKELNLDKKRAERLTVLARINRYENL-SRVEKSRLDDFSSLLHKQAIAKHAVLEQ 257 Query: 110 SQ--ATLAKSRTTLKSAQATAKRDVQLA--RIDAISQQDKEDAEASLLTAAAEVKVAEAD 165 KS + ++ A ++Q K + L + + + Sbjct: 258 ENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLE 317 Query: 166 VQTARINLAYTRITAPISGRIET-STVTPGALVVAQQDTALTTVQQLDPIYVDV 218 + + I AP+S +++ T G VV +T + V + D + V Sbjct: 318 LAKNEERQQASVIRAPVSVKVQQLKVHTEGG-VVTTAETLMVIVPEDDTLEVTA 370 Score = 31.3 bits (71), Expect = 0.007 Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 1/50 (2%) Query: 47 VKPRSQSLTTELAGRTKAFMVAEIRPQVSGIVQQ-RLFVEGAEIKAGQPL 95 LT ELA + + IR VS VQQ ++ EG + + L Sbjct: 307 TTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETL 356
>PF06580#Sensor histidine kinase Length = 349 Score = 34.5 bits (79), Expect = 7e-04 Identities = 15/81 (18%), Positives = 32/81 (39%), Gaps = 13/81 (16%) Query: 325 FEERCAARQLHLQLELAGGALPVHADPGRLQQLIGNLLENSVRY----TDAGGTVHVRAA 380 FE+R L + ++ + V P +Q L+ EN +++ GG + ++ Sbjct: 236 FEDR-----LQFENQINPAIMDVQVPPMLVQTLV----ENGIKHGIAQLPQGGKILLKGT 286 Query: 381 LQGDEVRVDVMDSGPGVDPQQ 401 V ++V ++G Sbjct: 287 KDNGTVTLEVENTGSLALKNT 307
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 79.5 bits (196), Expect = 2e-19 Identities = 29/134 (21%), Positives = 62/134 (46%), Gaps = 5/134 (3%) Query: 1 MTAASLDTPILIVEDEPKLASLMRDYLIAAGYSTHCLSNGLDVVPAVRANAPQLILLDIM 60 MT A+ IL+ +D+ + +++ L AGY SN + + A L++ D++ Sbjct: 1 MTGAT----ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVV 56 Query: 61 LPGRDGMDICKELRS-FSDVPIVMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVK 119 +P + D+ ++ D+P+++++A+ + + + GA DY+ KPF E++ + Sbjct: 57 MPDENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116 Query: 120 AILRRSSSSEPHTP 133 L Sbjct: 117 RALAEPKRRPSKLE 130
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 75.4 bits (185), Expect = 3e-19 Identities = 35/170 (20%), Positives = 65/170 (38%), Gaps = 14/170 (8%) Query: 1 MKKPAQDMRQHIIDVARSLMTNKGYTAVGLAEVLSTAGVPKGSFYYYFKSKEEFGQALLE 60 K+ AQ+ RQHI+DVA L + +G ++ L E+ AGV +G+ Y++FK K + + E Sbjct: 5 TKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWE 64 Query: 61 EYFSEYLGRVDALMARPGSG-----AERLLAYFNYWIETQGTDFPEGKCLVVKLGAEVCD 115 S A+ E L+ + E + L++++ C+ Sbjct: 65 LSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVT------EERRRLLMEIIFHKCE 118 Query: 116 LSEDMRGVLEVGTAK---IIKRITACVDMGVADDSIHPEGDHEGFAESLY 162 +M V + RI + + + + A + Sbjct: 119 FVGEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMR 168
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 34.0 bits (78), Expect = 3e-04 Identities = 19/93 (20%), Positives = 31/93 (33%), Gaps = 9/93 (9%) Query: 3 KVFVIGAAGKVGQRLLKNLGGGAHEVIAL---------HRKEQQSAAIKATGAIPLLGNL 53 K V GAAG +G + K L H+V+ + K+ + + G +L Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 54 TDLDASRLAAAMTGSDVVVFTAGAGGAGIELTN 86 D + A + V + L N Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLEN 94
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 80.3 bits (198), Expect = 6e-19 Identities = 26/120 (21%), Positives = 52/120 (43%), Gaps = 3/120 (2%) Query: 5 PSLLIVDDDISAIRVLSKILNGLG-QIRFATGGAQALKMVREMRPDLILLDAEMPGMSGF 63 ++L+ DDD + VL++ L+ G +R + A + + DL++ D MP + F Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 64 EVCETLKADQLLEDVPVIFITSHTETRIEEAGLALGAVDFIGKPIQPLIVTARVKTHLRL 123 ++ +K D+PV+ +++ GA D++ KP + + L Sbjct: 64 DLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 77.6 bits (191), Expect = 1e-16 Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 4/130 (3%) Query: 1020 LSGLHLLLVDDSEINLEVASLLLQQQGAVVQTCSNGLLALERLRQTPDFFDAVLMDVQMP 1079 ++G +L+ DD V + L + G V+ SN + D V+ DV MP Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAA--GDGDLVVTDVVMP 58 Query: 1080 EMDGYEATRRLRSELGLTRLPVLALTAGALAEERRQAELAGMDDFLTKPLDPAALIRAVR 1139 + + ++ R++ LPVL ++A +A G D+L KP D LI + Sbjct: 59 DENAFDLLPRIKKAR--PDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116 Query: 1140 RAVERVRGAP 1149 RA+ + P Sbjct: 117 RALAEPKRRP 126
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.9 bits (64), Expect = 0.021 Identities = 12/24 (50%), Positives = 15/24 (62%) Query: 32 VVVILGPSGCGKSTLLRCLNGLEL 55 VV+ G G GKSTL+ L GL+ Sbjct: 598 SVVLEGTGGIGKSTLINTLVGLDF 621
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 31.3 bits (71), Expect = 0.011 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%) Query: 25 QAVRNVSFQVARGE-TVAIVGESGSGKSTMANAI 57 Q + V ++ + + T+ I GESG+GK +A A+ Sbjct: 147 QEIYRVLARLMQTDLTLMITGESGTGKELVARAL 180
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 32.5 bits (74), Expect = 0.005 Identities = 26/157 (16%), Positives = 47/157 (29%), Gaps = 22/157 (14%) Query: 483 AEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAQRTQSSTTEIEALIKSLQDGTGAA 542 Q ++ RA V + ++ + ++ L A Sbjct: 197 TWQNQKYQKELNLDKKRAERLT-----VLARINRYENLSRVEKSRLDDFSSLLHKQAIAK 251 Query: 543 SELMNASRQRTEGTVALARQAEESLLEITHSIVTIEQMSQQISAAAEEQSAVTDEINRSV 602 ++ + E L + +EQ+ +I +A EE VT Sbjct: 252 HAVLEQENKYVEAVNELRVYKSQ-----------LEQIESEILSAKEEYQLVTQLFKN-- 298 Query: 603 ISVRDIADQSATATEQSAASTVELARLGSNLQDMVAR 639 +I D+ T+ T+ELA+ Q V R Sbjct: 299 ----EILDKLRQTTDNIGLLTLELAKNEERQQASVIR 331
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 54.8 bits (132), Expect = 3e-10 Identities = 18/102 (17%), Positives = 45/102 (44%) Query: 65 EVRPRVSGQIDQVAFTDGALVKKGDLLFQIDPRPFQSEVRRLEAQLQQARAVASRSDSEA 124 E++P + + ++ +G V+KGD+L ++ +++ + ++ L QAR +R + Sbjct: 98 EIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILS 157 Query: 125 QRGERLRSNNAISAELAESRTTSAQEAKAGVAAIQAQLDLAR 166 + E + + + S +E + I+ Q + Sbjct: 158 RSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQ 199 Score = 36.3 bits (84), Expect = 2e-04 Identities = 20/113 (17%), Positives = 44/113 (38%), Gaps = 13/113 (11%) Query: 100 QSEVRRLEAQLQQARAVASRSDSE-AQRGERLRSNNAISAELAESRTTSAQEAKAGVAAI 158 +E+R ++QL+Q + + E + ++ I +L ++ + Sbjct: 265 VNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNE--ILDKLRQTTDNIGL--------L 314 Query: 159 QAQLDLARLNLSFTRVTAPISGRVSRAEI-TAGNIVTADVTALTSVVSTDKVY 210 +L + + AP+S +V + ++ T G +VT L +V D Sbjct: 315 TLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTA-ETLMVIVPEDDTL 366
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1094 bits (2830), Expect = 0.0 Identities = 424/1040 (40%), Positives = 645/1040 (62%), Gaps = 17/1040 (1%) Query: 4 SKFFISRPIFAAVLSLLILIAGAISLFQLPISEYPEVVPPTVVVRANFPGANPKVIGETV 63 + FFI RPIFA VL++++++AGA+++ QLP+++YP + PP V V AN+PGA+ + + +TV Sbjct: 2 ANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTV 61 Query: 64 ASPLEQAITGVEGMLYMSSQATADGKLTLTITFALGTDLDNAQVQVQNRVTRSEPKLPEE 123 +EQ + G++ ++YMSS + + G +T+T+TF GTD D AQVQVQN++ + P LP+E Sbjct: 62 TQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQE 121 Query: 124 VTRIGITVDKASPDLTMVVHLTSPDKRYDMLYLSNYAVLNIKDELARLGGVGDVQLFGMG 183 V + GI+V+K+S MV S + +S+Y N+KD L+RL GVGDVQLFG Sbjct: 122 VQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG-A 180 Query: 184 DYSLRVWLDPNKTASRNLTATDVVNAIREQNRQVAAGQLGSPPSPNATSFQMSINTQGRL 243 Y++R+WLD + LT DV+N ++ QN Q+AAGQLG P+ SI Q R Sbjct: 181 QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240 Query: 244 VSEEEFENVVVRAGADGEITRLKDIARIELGSSQYALRSLLNNQPAVAIPIFQRPGSNAI 303 + EEF V +R +DG + RLKD+AR+ELG Y + + +N +PA + I G+NA+ Sbjct: 241 KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300 Query: 304 DISNDVRARMAELKQSFPEGMDYSIVYDPTIFVRGSIEAVIHTLFEALILVVLVVILFLQ 363 D + ++A++AEL+ FP+GM YD T FV+ SI V+ TLFEA++LV LV+ LFLQ Sbjct: 301 DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360 Query: 364 TWRASIIPLVAVPVSLIGTFAVMHMFGFSLNALSLFGLVLAIGIVVDDAIVVVENVER-N 422 RA++IP +AVPV L+GTFA++ FG+S+N L++FG+VLAIG++VDDAIVVVENVER Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 Query: 423 IELGLEPVAATHKAMAEVTGPIIATALVLCAVFVPAAFISGLSGQFYKQFALTIAISTVI 482 +E L P AT K+M+++ G ++ A+VL AVF+P AF G +G Y+QF++TI + + Sbjct: 421 MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480 Query: 483 SAFNSLTLSPALAAVLLKGHDAPKDRFSRFLDKMLGSWLFRPFNRFFEKASHGYVGTVAR 542 S +L L+PAL A LLK A F FN F+ + + Y +V + Sbjct: 481 SVLVALILTPALCATLLKPVSAEHHENKG--------GFFGWFNTTFDHSVNHYTNSVGK 532 Query: 543 VIRSSGIALLVYAGLMVLTWMGFASTPTGFVPSQDKQYLVAFAQLPDAASLDRTEDVIKR 602 ++ S+G LL+YA ++ + F P+ F+P +D+ + QLP A+ +RT+ V+ + Sbjct: 533 ILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQ 592 Query: 603 MSELALK--QPGVQDAIAFPGLSINGFTNSPNNGVVFVTLKPFDERKDPSLSANAIAGAL 660 +++ LK + V+ G S +G + N G+ FV+LKP++ER SA A+ Sbjct: 593 VTDYYLKNEKANVESVFTVNGFSFSG--QAQNAGMAFVSLKPWEERNGDENSAEAVIHRA 650 Query: 661 NGQFASIQEAYMAIFPPPPVQGLGTIGGFRLQIEDRGNLGYDELYKETQNIIAKSRSVP- 719 + I++ ++ F P + LGT GF ++ D+ LG+D L + ++ + P Sbjct: 651 KMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPA 710 Query: 720 ELAGLFTSYTVNVPQVDAAIDREKAKTHGVAVSDIFDTLQVYLGSLYANDFNRFGRTYQV 779 L + + + Q +D+EKA+ GV++SDI T+ LG Y NDF GR ++ Sbjct: 711 SLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKL 770 Query: 780 NVQAEQQFRQDADQIGQLKVRNNLGEMIPLATFVKVSDTAGPDRVMHYNGFITAEINGAA 839 VQA+ +FR + + +L VR+ GEM+P + F G R+ YNG + EI G A Sbjct: 771 YVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEA 830 Query: 840 APGYSSGQAQAAVEKLLREELPTGMIYEWTDLTYQQILSGNTALFVFPLCVLLAFLVLAA 899 APG SSG A A +E L +LP G+ Y+WT ++YQ+ LSGN A + + ++ FL LAA Sbjct: 831 APGTSSGDAMALMENLA-SKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAA 889 Query: 900 QYESWSLPLAVILIVPMTLLSAIAGVMIAGSDNNIFTQIGLIVLVGLACKNAILIVEFAK 959 YESWS+P++V+L+VP+ ++ + + N+++ +GL+ +GL+ KNAILIVEFAK Sbjct: 890 LYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAK 949 Query: 960 D-KQAEGMSPLDAVLEACRLRLRPILMTSFAFIMGVVPLVLSSGAGAEMRHAMGVAVFSG 1018 D + EG ++A L A R+RLRPILMTS AFI+GV+PL +S+GAG+ ++A+G+ V G Sbjct: 950 DLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGG 1009 Query: 1019 MLGVTFFGLLLTPVFYVLIR 1038 M+ T + PVF+V+IR Sbjct: 1010 MVSATLLAIFFVPVFFVVIR 1029 Score = 93.0 bits (231), Expect = 3e-21 Identities = 87/531 (16%), Positives = 184/531 (34%), Gaps = 44/531 (8%) Query: 544 IRSSGIALLVYAGLMVLTWMGFASTPTGFVPSQDKQYLVAFAQLPDAASLDRTEDVIKRM 603 IR A ++ LM+ + P P+ + A P A +D + ++ Sbjct: 6 IRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYP-GADAQTVQDTVTQV 64 Query: 604 SELALKQ-PGVQDAIAFPGLSINGFTNSPNNGVVFVTLKPFDERKDPSLSANAIAGALNG 662 E + + + ++ ++S + + +T F DP ++ + L Sbjct: 65 IEQNMNGIDNL--------MYMSSTSDSAGSVTITLT---FQSGTDPDIAQVQVQNKLQL 113 Query: 663 QFASIQEAYMAIFPPPPVQGLGTIGGFRLQIE---DRGNLGYDELYKETQNIIAKSRSVP 719 + + + + + + D D++ S Sbjct: 114 ATPLLPQE----VQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISD-----YVASNVKD 164 Query: 720 ELAGL--FTSYTVNVPQVDAAI--DREKAKTHGVAVSDIFDTL-----QVYLGSLYANDF 770 L+ L + Q I D + + + D+ + L Q+ G L Sbjct: 165 TLSRLNGVGDVQLFGAQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQL-GGTP 223 Query: 771 NRFGRTYQVNVQAEQQFRQDADQIGQLKVRNNL-GEMIPLATFVKVSDTAGPDRVM-HYN 828 G+ ++ A+ +F ++ ++ G++ +R N G ++ L +V V+ N Sbjct: 224 ALPGQQLNASIIAQTRF-KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARIN 282 Query: 829 GFITAEINGAAAPGYSSGQAQAAVEKL---LREELPTGMIYEWT-DLTYQQILSGNTALF 884 G A + A G ++ A++ L+ P GM + D T LS + + Sbjct: 283 GKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVK 342 Query: 885 VFPLCVLLAFLVLAAQYESWSLPLAVILIVPMTLLSAIAGVMIAGSDNNIFTQIGLIVLV 944 ++L FLV+ ++ L + VP+ LL A + G N T G+++ + Sbjct: 343 TLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAI 402 Query: 945 GLACKNAILIVE-FAKDKQAEGMSPLDAVLEACRLRLRPILMTSFAFIMGVVPLVLSSGA 1003 GL +AI++VE + + + P +A ++ ++ + +P+ G+ Sbjct: 403 GLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGS 462 Query: 1004 GAEMRHAMGVAVFSGMLGVTFFGLLLTPVF-YVLIRNYVERQEARKAARVN 1053 + + + S M L+LTP L++ K Sbjct: 463 TGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFG 513
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.8 bits (67), Expect = 0.025 Identities = 14/95 (14%), Positives = 33/95 (34%), Gaps = 4/95 (4%) Query: 213 ELDVVRAEARLAAVEASVPQLQAEQARQRNRIATLLGERPENLSVDLSPSKLPAIAKALP 272 +L + AEA ++S+ Q + EQ R + ++ E + + L Sbjct: 126 KLTALGAEADTLKTQSSLLQARLEQTRYQILSRSI--ELNKLPELKLPDEPYFQNVSEEE 183 Query: 273 IGDPTQVLRNRPDIRAAERQLAASTARIGVATADL 307 + T +++ + + Q + A+ Sbjct: 184 VLRLTSLIKEQ--FSTWQNQKYQKELNLDKKRAER 216
>SHIGARICIN#Ribosome inactivating protein family signature. Length = 289 Score = 29.8 bits (67), Expect = 0.016 Identities = 16/76 (21%), Positives = 26/76 (34%), Gaps = 9/76 (11%) Query: 28 LLVLSLVFWWWRM--PVQTAPAKL------SHTYAQALEQAHDGKPGAARVLYQQLARTD 79 LV SL+ + P S +Y + P ++ L R+ Sbjct: 4 FLVFSLLILTLFLTAPAVEGDVSFRLSGATSSSYGVFISNLRKALPYERKLYDIPLLRST 63 Query: 80 LSDAQRISLLAELSDY 95 L +QR L L++Y Sbjct: 64 LPGSQRY-ALIHLTNY 78
>NEISSPPORIN#Neisseria sp. porin signature. Length = 348 Score = 28.4 bits (63), Expect = 0.016 Identities = 14/38 (36%), Positives = 19/38 (50%) Query: 79 AARNEWMKSIAGILELTHNHGTESDDTASYHNGNSDPR 116 AA+ + K + +HN TE TA+Y GN PR Sbjct: 245 AAQQQDAKLYGAMSGNSHNSQTEVAATAAYRFGNVTPR 282
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 100 bits (251), Expect = 8e-24 Identities = 90/351 (25%), Positives = 143/351 (40%), Gaps = 57/351 (16%) Query: 513 NGGAGNDTLYGGAGADTLDGGAGNDTLY---GGAGADTLDG----GVGNDNLYGDAGNDT 565 + G G+D ++ AG+ + G G+D +Y G T+DG GN + G D Sbjct: 615 HLGDGDDKVFLSAGSANIYAGKGHDVVYYDKTDTGYLTIDGTKATEAGNYTVTRVLGGDV 674 Query: 566 YLFYRGAGQDWISDYDSSAGNLDVIRVSDSLTPADIQLSRSAYDLYVG----------IA 615 + Q+ + + + S G ++ + + I Sbjct: 675 KVL-----QEVVKEQEVSVGK-----RTEKTQYRSYEFTHINGKNLTETDNLYSVEELIG 724 Query: 616 GSADKLTVSGWFS---NTSTQVEQIQFSDG--TTWGIDAIRAMSSGTASQGNDVLYG--- 667 + F+ + + + I+ +DG +G +S G G+D LYG Sbjct: 725 TTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGG---NGDDQLYGGDG 781 Query: 668 NDALA-----DSLSGLDGDDEINGLGGN---DILSGGAGNDRLYGDAGNDTLTGGTGNDQ 719 ND L + L+G DGDDE G + ++L GG GND+LYG G D L GG G+D Sbjct: 782 NDKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDL 841 Query: 720 LDGGRGNDLYQFERGDGQDVINDFDPDANTDVLQFGAGIAADQLWFSKNGWDL------- 772 L GG GND+Y++ G G +I+D + L A I + F + G DL Sbjct: 842 LKGGYGNDIYRYLSGYGHHIIDDDGGKEDKLSL---ADIDFRDVAFKREGNDLIMYKGEG 898 Query: 773 EVGVIGTADKVTVSNWSFWGAGSWEKAQQIEQFRTDDGKVLLGGQVDQLVE 823 V IG + +T NW F +IEQ G+++ + + +E Sbjct: 899 NVLSIGHKNGITFRNW-FEKESGDISNHEIEQIFDKSGRIITPDSLKKALE 948 Score = 98.9 bits (246), Expect = 4e-23 Identities = 81/356 (22%), Positives = 133/356 (37%), Gaps = 75/356 (21%) Query: 8 IINGQSGDDWLYGTSANDILDGGAGNDRLSGGLGNDTYLFYRGMGQDTVTDFDWTVGNID 67 + GDD ++ ++ + + G G+D + + YL G ++ Sbjct: 613 ESHLGDGDDKVFLSAGSANIYAGKGHDVVYYDKTDTGYLTIDGTKATEAGNY-------- 664 Query: 68 TIKVAADIAPADVTVSRDGTYLYLSIKGTTDKMSVTFFNNINYQ-VERVEFADGTVWDID 126 V + DV V ++ G + Y+ E + + D Sbjct: 665 --TVTRVLG-GDVKVLQEVVKEQEVSVGKRTE-------KTQYRSYEFTHINGKNLTETD 714 Query: 127 TLKTMTRGVASDTADTLYGDVGDDVLDGLNGNDKLYGEEGNDLLSGGEGNDTLNGGTGND 186 L ++ + + AD +G D+ G +G+D + G +GND L G +GNDTL+GG G+D Sbjct: 715 NLYSVEELIGTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDD 774 Query: 187 TLNGGAGNDSLSGDDGDDTLDGGAGND--------------------------------- 213 L GG GND L G G++ L+GG G+D Sbjct: 775 QLYGGDGNDKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLD 834 Query: 214 ------YLSGSRGNDTYLFYRGMGQDTISEFDTTAGNADTIKVAADIIPDDVVVRRENTD 267 L G GND Y + G G I + G D + + ADI DV +RE D Sbjct: 835 GGEGDDLLKGGYGNDIYRYLSGYGHHIIDD---DGGKEDKLSL-ADIDFRDVAFKREGND 890 Query: 268 LYLSIKGTT-------------DWMKIYSYTDSGYQVERVEFADGTVWSVSDLKRL 310 L + +W + S S +++E++ G + + LK+ Sbjct: 891 LIMYKGEGNVLSIGHKNGITFRNWFEKESGDISNHEIEQIFDKSGRIITPDSLKKA 946 Score = 97.0 bits (241), Expect = 1e-22 Identities = 96/375 (25%), Positives = 138/375 (36%), Gaps = 77/375 (20%) Query: 351 GGAGDDLLDGGMGLDTLDGGAGNDMLYGGSGNDTYLFQRGGGQDVINDRDWTAGNIDTLK 410 G GDD + G + G G+D++Y + YL G + AGN + Sbjct: 616 LGDGDDKVFLSAGSANIYAGKGHDVVYYDKTDTGYLTIDG-------TKATEAGNYTVTR 668 Query: 411 LAPGIVSTDIKVSRAGNNLELAIIG-TSDKITVRDWFYSADSQVEQVQFADGTLWDVATL 469 ++ D+KV + + +G ++K R E L + L Sbjct: 669 ----VLGGDVKVLQEVVKEQEVSVGKRTEKTQYRS--------YEFTHINGKNLTETDNL 716 Query: 470 NAMVKGVATEGNDVLQGEESVADTLNGLGGDDTLYGLSGNDTLNGGAGNDTLYGGAGADT 529 ++ + + T D G + D +G GDD + G GND L G GNDTL GG G D Sbjct: 717 YSVEELIGTTRADKFFGSK-FTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQ 775 Query: 530 LDGGAGNDTLYGGAGADTLDGGVG------------------------------------ 553 L GG GND L G AG + L+GG G Sbjct: 776 LYGGDGNDKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDG 835 Query: 554 ---NDNLYGDAGNDTYLFYRGAGQDWISDYDSSAGNLDVIRVSDSLTPADIQLSRSAYDL 610 +D L G GND Y + G G I D G D + ++D + D+ R DL Sbjct: 836 GEGDDLLKGGYGNDIYRYLSGYGHHIIDD---DGGKEDKLSLAD-IDFRDVAFKREGNDL 891 Query: 611 YVG-------IAGSADKLTVSGWFSNTST-----QVEQIQFSDGTTWGIDAIRAMSSGTA 658 + G + +T WF S ++EQI G D+++ Sbjct: 892 IMYKGEGNVLSIGHKNGITFRNWFEKESGDISNHEIEQIFDKSGRIITPDSLKKALEYQQ 951 Query: 659 SQ-GNDVLYGNDALA 672 +YGNDALA Sbjct: 952 RNNKASYVYGNDALA 966 Score = 78.1 bits (192), Expect = 8e-17 Identities = 84/346 (24%), Positives = 133/346 (38%), Gaps = 70/346 (20%) Query: 189 NGGAGNDSLSGDDGDDTLDGGAGNDYLSGSRGNDTYLFYRGMGQDTISEFDTTAGNADTI 248 + G G+D + G + G G+D + + + YL G + T + Sbjct: 615 HLGDGDDKVFLSAGSANIYAGKGHDVVYYDKTDTGYLTIDGTKATEAGNYTVTRVLGGDV 674 Query: 249 KVAADIIP--DDVVVRRENTDLYLSIKGTTDWMKIYSYTDSGYQVERVEFADGTVWSVSD 306 KV +++ + V +R Y S + T K + TD+ Y VE + GT Sbjct: 675 KVLQEVVKEQEVSVGKRTEKTQYRSYEFTHINGKNLTETDNLYSVEEL---IGT------ 725 Query: 307 LKRLSRVVASEGAETIYGDETSEQLDGLGGNDQIYGLAGNDVLLGGAGDDLLDGGMGLDT 366 R + S+ + +G + + ++G GND++YG GND L GG GDD L GG G D Sbjct: 726 -TRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDK 784 Query: 367 LDGGAGNDMLYGGSGNDTYLFQRGG----------------GQDVINDRDWTAGNI---- 406 L G AGN+ L GG G+D + Q G + + D G+ Sbjct: 785 LIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKG 844 Query: 407 -------------------------DTLKLAPGIVSTDIKVSRAGNNL-------ELAII 434 D L LA I D+ R GN+L + I Sbjct: 845 GYGNDIYRYLSGYGHHIIDDDGGKEDKLSLA-DIDFRDVAFKREGNDLIMYKGEGNVLSI 903 Query: 435 GTSDKITVRDWF-----YSADSQVEQVQFADGTLWDVATLNAMVKG 475 G + IT R+WF ++ ++EQ+ G + +L ++ Sbjct: 904 GHKNGITFRNWFEKESGDISNHEIEQIFDKSGRIITPDSLKKALEY 949 Score = 58.4 bits (141), Expect = 1e-10 Identities = 43/140 (30%), Positives = 65/140 (46%), Gaps = 17/140 (12%) Query: 8 IINGQSGDDWLYGTSANDILDGGAGNDRLSGGLGNDTYLFYRGMGQDTVTDFDWTVGNID 67 ++ G G+D LYG+ D+LDGG G+D L GG GND Y + G G + D G D Sbjct: 814 VLFGGKGNDKLYGSEGADLLDGGEGDDLLKGGYGNDIYRYLSGYGHHIIDD---DGGKED 870 Query: 68 TIKVAADIAPADVTVSRDGTYLYL-----SIKGTTDKMSVTFFN--------NINYQVER 114 + + ADI DV R+G L + ++ K +TF N N+++E+ Sbjct: 871 KLSL-ADIDFRDVAFKREGNDLIMYKGEGNVLSIGHKNGITFRNWFEKESGDISNHEIEQ 929 Query: 115 VEFADGTVWDIDTLKTMTRG 134 + G + D+LK Sbjct: 930 IFDKSGRIITPDSLKKALEY 949 Score = 49.2 bits (117), Expect = 6e-08 Identities = 69/346 (19%), Positives = 120/346 (34%), Gaps = 51/346 (14%) Query: 9 INGQSGDDWLYGTSANDILDGGAGNDRLSGGLGNDTYLFYRGMGQDTVTDFDWTVGNIDT 68 + G + D +G+ DI G G+D + G GND Y G DT++ GN D Sbjct: 722 LIGTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDR--LYGDKGNDTLSG-----GNGDD 774 Query: 69 IKVAADIAPADVTVSRDGTYLYLSIKGTTDKMSVTFFNNINYQVERVEFADGTVWDIDTL 128 D + G G + + ++ Sbjct: 775 QLYGG--DGNDKLIGVAGNNYLNGGDGD----------------DEFQVQGNSLA----- 811 Query: 129 KTMTRGVASDTADTLYGDVGDDVLDGLNGNDKLYGEEGND--LLSGGEGNDTL-NGGTGN 185 K + G + D LYG G D+LDG G+D L G GND G G+ + + G Sbjct: 812 KNVLFGGKGN--DKLYGSEGADLLDGGEGDDLLKGGYGNDIYRYLSGYGHHIIDDDGGKE 869 Query: 186 DTLNGGAGNDSLSGDDGDDTLDGGAGNDYLSGSRGNDTYLFYRGMGQDTISEFDTTAGNA 245 D L SL+ D D GND + + G + F+ +G+ Sbjct: 870 DKL-------SLADIDFRDVAFKREGNDLIMYKGEGNVLSIGHKNGITFRNWFEKESGDI 922 Query: 246 DTIKVAADIIPDDVVVRRENTDLYLSIKGTTDWMKIYSYTDSGYQVERVEFADGTVWSVS 305 ++ ++ ++ L + + + Y A G+ ++ Sbjct: 923 SNHEIEQIFDKSGRIITPDSLKKALEYQQRNN--------KASYVYGNDALAYGSQGDLN 974 Query: 306 DLKR-LSRVVASEGAETIYGDETSEQLDGLGGNDQIYGLAGNDVLL 350 L +S+++++ G+ + + T+ L L GN + N + L Sbjct: 975 PLINEISKIISAAGSFDVKEERTAASLLQLSGNASDFSYGRNSITL 1020 Score = 41.9 bits (98), Expect = 1e-05 Identities = 21/42 (50%), Positives = 27/42 (64%) Query: 2 GDTMATIINGQSGDDWLYGTSANDILDGGAGNDRLSGGLGND 43 GD ++G +GDD LYG ND L G AGN+ L+GG G+D Sbjct: 760 GDKGNDTLSGGNGDDQLYGGDGNDKLIGVAGNNYLNGGDGDD 801
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 407 bits (1048), Expect = e-141 Identities = 162/468 (34%), Positives = 269/468 (57%), Gaps = 3/468 (0%) Query: 9 LLQRYRRVWRQSWRHRREMDAPKRLAHEVQFLPAALELQDKPSHPAPRVFMWAIMFFAAL 68 L RY+ VW ++W+ R+++D P R E +FLPA LEL + P PR+ + IM F + Sbjct: 11 FLLRYKLVWSETWKIRKQLDTPVREKDENEFLPAHLELIETPVSRRPRLVAYFIMGFLVI 70 Query: 69 ALLWACLGKIDVVATASGKIIPSGKTKTIQSSETAVVKAIHVRDGQSVKAGQLLLELDST 128 A + + LG++++VATA+GK+ SG++K I+ E ++VK I V++G+SV+ G +LL+L + Sbjct: 71 AFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTAL 130 Query: 129 SADADVGRVRSDLLAARIDSARAAAMLDAINQRKPPRDL---TGTILDADPMHVLAAERW 185 A+AD + +S LL AR++ R + +I K P + VL Sbjct: 131 GAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSL 190 Query: 186 LQGQYQEYRSSLDLVDAEIQQRQADIQAARIQVMSLQKTLPIATKLASDYENLLKKQYIA 245 ++ Q+ +++ + + +++A+ ++ + + D+ +LL KQ IA Sbjct: 191 IKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIA 250 Query: 246 RHAYLEKEQARLDLERQLSVQQASVLQSTAARQEAERRREGVVAQTRRAMLDLLQQADQK 305 +HA LE+E ++ +L V ++ + Q + A+ + V + +LD L+Q Sbjct: 251 KHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDN 310 Query: 306 IASFNQDLTKARYQEDLTTLEAPVDGTVQQLAVHTVGGVVTPAQPLMVLVPDGQPVEVEA 365 I +L K ++ + + APV VQQL VHT GGVVT A+ LMV+VP+ +EV A Sbjct: 311 IGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTA 370 Query: 366 MLENKDVGFVRAGQAVTVKVETFTFTKYGTIEGEVISVSNDAIEDEKRGLIYSSKIRLNS 425 +++NKD+GF+ GQ +KVE F +T+YG + G+V +++ DAIED++ GL+++ I + Sbjct: 371 LVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVIISIEE 430 Query: 426 DTLNVNGVDIKLSPGMAVTAEVTTNKRRVIEYFLSPLQQHASESFRER 473 + L+ +I LS GMAVTAE+ T R VI Y LSPL++ +ES RER Sbjct: 431 NCLSTGNKNIPLSSGMAVTAEIKTGMRSVISYLLSPLEESVTESLRER 478
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 30.2 bits (68), Expect = 0.040 Identities = 9/44 (20%), Positives = 21/44 (47%) Query: 276 NAITLLLDVLFSVVFIAVMFYYSGWLTLIVLLSLPLYILVSVLI 319 + L + + V + +F + TLI +++P+ +L + I Sbjct: 339 EVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAI 382
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 48.7 bits (116), Expect = 2e-08 Identities = 26/148 (17%), Positives = 50/148 (33%), Gaps = 5/148 (3%) Query: 76 SAGTLTELRVDIGDSVKPGQVLARLDPQPAQLRLQEAQAALRLARAQALERQ--RNYQRQ 133 + E+ V G+SV+ G VL +L A+ + Q++L AR + Q Sbjct: 103 ENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIEL 162 Query: 134 QNLLAAGSVAQSVVESAQSSSEQASAELIRTQ---AELDLARRELDRTRLIAPFAGRVVA 190 L + ++ LI+ Q + ++EL+ + A + Sbjct: 163 NKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLAR 222 Query: 191 RHAQPQSLLSAGQVVLDVESAAEQQVVA 218 + + D S +Q +A Sbjct: 223 INRYENLSRVEKSRLDDFSSLLHKQAIA 250 Score = 32.1 bits (73), Expect = 0.004 Identities = 20/140 (14%), Positives = 45/140 (32%), Gaps = 4/140 (2%) Query: 95 QVLARLDPQPAQLRLQEAQAALRLARAQALERQRNYQRQQNLLAAGSVAQSVVESAQSSS 154 Q +A+ + + EA LR+ ++Q + + + V Q Sbjct: 247 QAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAK--EEYQLVTQLFKNEILDKL 304 Query: 155 EQASAELIRTQAELDLARRELDRTRLIAPFAGRVVARHAQPQ-SLLSAGQVVLD-VESAA 212 Q + + EL + + AP + +V + +++ + ++ V Sbjct: 305 RQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDD 364 Query: 213 EQQVVAAVPLALADSLEPGD 232 +V A V + G Sbjct: 365 TLEVTALVQNKDIGFINVGQ 384
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 72.6 bits (178), Expect = 5e-17 Identities = 26/135 (19%), Positives = 61/135 (45%), Gaps = 1/135 (0%) Query: 3 ILVIEDHRDIHDNLLEFFELRGHAVEGALDGLSGLHLAASKRFDAIILDIMLPGIDGNQI 62 ILV +D I L + G+ V + + A+ D ++ D+++P + + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 63 CHSLRQYSKSEVAIVMLSARDELDDRLTGFKVGADDYITKPFAMSEVLARVEAIVSRRQR 122 +++ +VM SA++ + + GA DY+ KPF ++E++ + ++ +R Sbjct: 66 LPRIKKARPDLPVLVM-SAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 123 QDNRMMVVADLQFDL 137 + +++ + L Sbjct: 125 RPSKLEDDSQDGMPL 139
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.9 bits (64), Expect = 0.026 Identities = 9/22 (40%), Positives = 13/22 (59%) Query: 41 LAVVGPNGSGKSTLLKLLAGIQ 62 + + G G GKSTL+ L G+ Sbjct: 599 VVLEGTGGIGKSTLINTLVGLD 620
>PRPHPHLPASEC#Prokaryotic zinc-dependent phospholipase C signature. Length = 398 Score = 30.8 bits (69), Expect = 0.020 Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 11/85 (12%) Query: 252 KNITAYYRQRLDEILEDRTDLA----------PASSGRTAHFFVPDPEKTFHRGSTDYFV 301 KN R+ L+ + E+ +L A HF+ PD + F + ++ Y Sbjct: 56 KNEPESVRKNLEILKENMHELQLGSTYPDYDKNAYDLYQDHFWDPDTDNNFSKDNSWYLA 115 Query: 302 SDRKIDIGAFDTPTFTGLAVGTVEK 326 D G F+ LA ++ Sbjct: 116 YSIP-DTGESQIRKFSALARYEWQR 139
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 31.8 bits (72), Expect = 6e-04 Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 10/105 (9%) Query: 47 YLNGEDGKFLIARCEGQIIAAVGYLPYDHRFPQFDYRGRRTVEIVRLFVTPEFRGDGLAS 106 Y+ E + E +G + ++ G +E + V ++R G+ + Sbjct: 59 YVEEEGKAAFLYYLENNC---IGRIKIRS-----NWNGYALIEDIA--VAKDYRKKGVGT 108 Query: 107 RLCQALWEYAEAGGIEVLYLHTHPFLPGAIRFWEKQGFAVTDVES 151 L E+A+ L L T A F+ K F + V++ Sbjct: 109 ALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFIIGAVDT 153
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 80.3 bits (198), Expect = 1e-19 Identities = 34/143 (23%), Positives = 60/143 (41%), Gaps = 2/143 (1%) Query: 2 TRILAIEDDAITAKEIVTELSSHGLEVDWVDNGRDGLARAVSGDYDLITLDRMLPEMDGL 61 IL +DDA + LS G +V N +GD DL+ D ++P+ + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 62 TIVTHLRAQGISTPILMISALSDVDERVRGLRAGGDDYLPKPFASDEMAARVEVLLRRSN 121 ++ ++ P+L++SA + ++ G DYLPKPF E+ + L + Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL--AE 121 Query: 122 PVSAAKTVLQVADLELNLITREA 144 P + + + L+ R A Sbjct: 122 PKRRPSKLEDDSQDGMPLVGRSA 144
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 42.1 bits (99), Expect = 3e-06 Identities = 22/158 (13%), Positives = 49/158 (31%), Gaps = 5/158 (3%) Query: 72 TLTGDIQARKVTEQSFRVSGKLIKRYVDVGDRVRVGQVLARLDAREQNTELASARTEVAV 131 + + ++ K +D + Q +A+ EQ + A E+ V Sbjct: 211 KKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRV 270 Query: 132 RQSRLHLAEQNYQRQQVLLPKGFTNLSEYQK-ARSGLDSARGDLAALQAQQANARDQVGY 190 +S+L E + ++ L ++ L + A ++ Sbjct: 271 YKSQLEQIESEILSAKEEYQ---LVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQA 327 Query: 191 TGLFAAADGIV-TARYAEEGQVVQAATAIFSVAHDGER 227 + + A V + EG VV A + + + + Sbjct: 328 SVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDT 365 Score = 33.6 bits (77), Expect = 0.001 Identities = 22/122 (18%), Positives = 41/122 (33%), Gaps = 11/122 (9%) Query: 97 YVDVGDRVRVGQVLARLDAREQNTELASARTEVAV------RQSRLHLAEQNYQRQQVLL 150 V G+ VR G VL +L A + ++ + R L + + + ++ L Sbjct: 111 IVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKL 170 Query: 151 P--KGFTNLSEYQKARSGLDSARGDLAALQAQQANARDQVGYTGLFAAADGIVTARYAEE 208 P F N+SE + R + + Q Q+ + A ++ E Sbjct: 171 PDEPYFQNVSEEEVLRL-TSLIKEQFSTWQNQKYQKE--LNLDKKRAERLTVLARINRYE 227 Query: 209 GQ 210 Sbjct: 228 NL 229 Score = 29.4 bits (66), Expect = 0.029 Identities = 8/78 (10%), Positives = 24/78 (30%) Query: 111 ARLDAREQNTELASARTEVAVRQSRLHLAEQNYQRQQVLLPKGFTNLSEYQKARSGLDSA 170 L+ ++ E + + ++ + + LL K + + A Sbjct: 205 KELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEA 264 Query: 171 RGDLAALQAQQANARDQV 188 +L ++Q ++ Sbjct: 265 VNELRVYKSQLEQIESEI 282
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 37.5 bits (87), Expect = 6e-05 Identities = 39/192 (20%), Positives = 72/192 (37%), Gaps = 13/192 (6%) Query: 84 GDRVRKGDLLATLEPGDQQHRLRARQAELGKAQSAWQQARDELTRYQQLYERGIGSRARM 143 G+ VRKGD+L L +A+ K QS+ QAR E TRYQ L ++ Sbjct: 115 GESVRKGDVLLKLTALGA-------EADTLKTQSSLLQARLEQTRYQILSRSIELNKLPE 167 Query: 144 DQLDNDLRTQDALRNQARVAVQQAGDHVSYTHLSAEFDGL---ITGWQAEVGQVMATGQA 200 +L ++ Q+ ++ V + ++ + + +AE V+A Sbjct: 168 LKLPDEPYFQNV--SEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINR 225 Query: 201 VVSLARPDSREAVVDLPLGSLDERHRIRVISQINEQLSVAADVRQLAPQIN-AETRTQRV 259 +L+R + L + V+ Q N+ + ++R Q+ E+ Sbjct: 226 YENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSA 285 Query: 260 RLALQNPADSFR 271 + Q F+ Sbjct: 286 KEEYQLVTQLFK 297
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 463 bits (1192), Expect = e-148 Identities = 238/1049 (22%), Positives = 441/1049 (42%), Gaps = 76/1049 (7%) Query: 12 LRHRTLVWYMMFVSLLMGSWSFLNLGREEDPSFAIKTMVIQARWPGATLPDTLQQLTDRL 71 +R W + + ++ G+ + L L + P+ A + + A +PGA +T + Sbjct: 6 IRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVTQVI 65 Query: 72 EKKLEEIDALDYVKSYTL-AGESTLFVFLKSETRSADIPAAWYQVRKKISDVRAELPSGI 130 E+ + ID L Y+ S + AG T+ + +S T D A QV+ K+ LP + Sbjct: 66 EQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGT---DPDIAQVQVQNKLQLATPLLPQEV 122 Query: 131 QGP-AFNDEFGDVFGSIYAFTADGLSFRQ--LRDYVE-QVRADIRSVPNLGKIELLGAQR 186 Q ++ + + F +D Q + DYV V+ + + +G ++L GAQ Sbjct: 123 QQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGAQY 182 Query: 187 EV-IYLNFSIRKLAALGIDQRQVLQSLQAQNSVTPAGVMEAGPE------RIAVRASGQF 239 + I+L+ L + V+ L+ QN AG + P ++ A +F Sbjct: 183 AMRIWLDAD--LLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240 Query: 240 SNEQDLEAVNLRFGD--RFFRLSDLATIERRYADPPSSLFRFNGQPAIGLAVAMKQGGNI 297 N ++ V LR RL D+A +E + + + R NG+PA GL + + G N Sbjct: 241 KNPEEFGKVTLRVNSDGSVVRLKDVARVELG-GENYNVIARINGKPAAGLGIKLATGANA 299 Query: 298 QAFGTQLQQRIDDLTTELPLGIDVHLVSSQADVVEKAIGGFTHALFEAILIVLVVSFISL 357 ++ ++ +L P G+ V V+ +I LFEAI++V +V ++ L Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 358 G-IRAGLVVACSIPLVLALVFVFMEYSGITMQRISLGALIIALGLLVDDAMITVEMMVNR 416 +RA L+ ++P+VL F + G ++ +++ +++A+GLLVDDA++ VE + Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 417 LESGDSLPQAATF-AYTSTAFPMLTGTLVTVAGFVPIGLNSSSAGEYVFTMFAVIAVALL 475 + P+ AT + + ++ +V A F+P+ S G I A+ Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 476 LSWLVAVLFAPLIGVHILKASAQ--HAAPG-----------RWMRGFSRLLVKALEHRGW 522 LS LVA++ P + +LK + H G + ++ + K L G Sbjct: 480 LSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539 Query: 523 VIGITLLMFIGSLFAGRLLQNQFFPDSDRPEILVDIYMPQNGSIEGTRQTMDRF-EATLK 581 + I L+ G + L + F P+ D+ L I +P + E T++ +D+ + LK Sbjct: 540 YLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLK 599 Query: 582 EDADVVRWSSYVGKGAVRFYLPLDQQLSNPFYGQLVIV-----SQGGEARDRLIERLRQR 636 + V S F Q N + + + + + +I R + Sbjct: 600 NEKANV--ESVFTVNGFSF----SGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKME 653 Query: 637 FRDDYVGVGGYVQPLNMGPPVGWPVQYRVSGPDIEQVRSQAMALAAILDAN--------- 687 G+V P NM V +G D E + + A+ A Sbjct: 654 LGKIR---DGFVIPFNMPAIVE---LGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQ 707 Query: 688 --PNIGQVIYDWNEPGKVLKIDIAQDKVRQFGLSSEDVAQILNSLVSGTTITQVRDSTYL 745 ++ V + E K+++ Q+K + G+S D+ Q +++ + GT + D + Sbjct: 708 HPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRV 767 Query: 746 IDLVGRADSDERSSVQTLANLQIPTPGGASVPLLAFATLSYEQEQPLVWRRDRLPTITLK 805 L +AD+ R + + L + + G VP AF T + P + R + LP++ Sbjct: 768 KKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSM--- 824 Query: 806 ANVLGTLQPAALVRQLKPDVDAFSARLPLRYSVATGGAVEASARSQGPILKVVPLMLLLV 865 + G P ++ +++LP G S +V + ++V Sbjct: 825 -EIQGEAAPGTSSGDAMALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVV 883 Query: 866 ISFLMIQLHSVKKLLLVVSVVPLGLIGVVAALLISGYPLGFVAILGVLALIGIIIRNSVI 925 L S + V+ VVPLG++GV+ A + ++G+L IG+ +N+++ Sbjct: 884 FLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAIL 943 Query: 926 LVTQIDEFIAA-GESAWTSVVKATEHRCRPIMLTAAAASLGMIPIA------REVFWGPM 978 +V + + G+ + + A R RPI++T+ A LG++P+A + Sbjct: 944 IVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQN-AV 1002 Query: 979 AIAMIGGIAIATLLTLFFLPALYMVSYRI 1007 I ++GG+ ATLL +FF+P ++V R Sbjct: 1003 GIGVMGGMVSATLLAIFFVPVFFVVIRRC 1031
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 46.0 bits (109), Expect = 2e-07 Identities = 77/398 (19%), Positives = 137/398 (34%), Gaps = 61/398 (15%) Query: 16 FWACFGGWSLDALEVQMFGLAIPALIAAFALTKGDAGLISAVTLVTSALGGWVGGALSDR 75 W C + L + +++P + F ++ ++T ++G V G LSD+ Sbjct: 17 IWLCILSF-FSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQ 75 Query: 76 YGRVRTLQWMILWFSLFTFLSAFVTGFNQLLIV-KALQGFGIGGEWAAGAVLMAETIQSR 134 G R L + I+ + + F LLI+ + +QG G A V++A I Sbjct: 76 LGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKE 135 Query: 135 YRGKVMATVQSAWAVGWGLA------------------------VVLFTLIYSFVPE--- 167 RGK + S A+G G+ + + L+ E Sbjct: 136 NRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKEVRI 195 Query: 168 ----DIAWRVMFFVGLLPALMIIWVRRNVEEPDSFQRMQKSAAPKGSFFRSMAGIFRP-- 221 DI ++ VG++ +++ S + S F + + + P Sbjct: 196 KGHFDIKGIILMSVGIV--FFMLFTTSY-----SISFLIVSVLSFLIFVKHIRKVTDPFV 248 Query: 222 --ELL--RVTLLGGLLGLGAHGGYHAVMTWLPTFLKTERNLSVLSSG------GYLAVII 271 L ++G L G G ++ +P +K LS G G ++VII Sbjct: 249 DPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVII 308 Query: 272 VAFWCGCVCSGLLIDRIGRRKNIMLFALCCVVTVQCYLMLPLSNTQMLFLG--FPLGFFA 329 + G+L+DR G + + V+ L + + + + F LG + Sbjct: 309 FGY-----IGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLS 363 Query: 330 AGIPASLGSFFNELYPAEVRGAGVGFCYNFGRVLSAVF 367 + L E GAG+ NF LS Sbjct: 364 FTKTVISTIVSSSLKQQEA-GAGMSL-LNFTSFLSEGT 399
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 41.8 bits (98), Expect = 3e-07 Identities = 19/35 (54%), Positives = 25/35 (71%), Gaps = 2/35 (5%) Query: 1 MRRA--QRGFTLLEVLLVISLLGVLLVLVAGALLG 33 MR QRGFTLLE+++VI ++GVL LV L+G Sbjct: 1 MRATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMG 35
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 35.7 bits (82), Expect = 2e-05 Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 2/42 (4%) Query: 4 SQSGFTLLEMLAALTVMAVCSGVLLVAFGQSA--RSLQQVAR 43 Q GFTLLEM+ L +M V +G++L+AF S + Q +AR Sbjct: 2 RQRGFTLLEMMLILLLMGVSAGMVLLAFPASRDDSAAQTLAR 43
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 39.1 bits (91), Expect = 1e-06 Identities = 19/50 (38%), Positives = 30/50 (60%) Query: 1 MRTPVASRGFTLMEMLVVLVLMSIAVGLVGFGLQQGLSTASERRAVGDMV 50 MR RGFTL+E++VV+V++ + LV L A +++AV D+V Sbjct: 1 MRATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIV 50
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 119 bits (299), Expect = 2e-37 Identities = 46/140 (32%), Positives = 75/140 (53%), Gaps = 9/140 (6%) Query: 9 KPARRQGGFTLLEMLAVIVLLGIVATIVVRQVGGNVDKGKYGAGKAQLASLGMKIESYAL 68 + +Q GFTLLE++ VIV++G++A++VV + GN +K + + +L ++ Y L Sbjct: 2 RATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKL 61 Query: 69 DVGSPPKT---LQQLTEKPGNA---SNWNGPYAKPSDLKDPFGHAFGYRFPGQHGSFDLI 122 D P T L+ L E P +N+N DP+G+ + PG+HG++DL+ Sbjct: 62 DNHHYPTTNQGLESLVEAPTLPPLAANYNKEGYIKRLPADPWGNDYVLVNPGEHGAYDLL 121 Query: 123 FYGQDGQPGGEGYSADLGNW 142 G DG+ G E D+ NW Sbjct: 122 SAGPDGEMGTED---DITNW 138
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 318 bits (817), Expect = e-108 Identities = 139/405 (34%), Positives = 216/405 (53%), Gaps = 8/405 (1%) Query: 1 MSLFKYRALDAQGAPQNGTLEARDQDAAIAALQKRGLMVLQVDAAGLGGLRRALGSGL-- 58 M+ + Y+ALDAQG GT EA A L++RGL+ L VD + +GL Sbjct: 1 MAQYHYQALDAQGKKCRGTQEADSARQARQLLRERGLVPLSVDENRGDQQKSG-STGLSL 59 Query: 59 -----LNGAALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTKALIERIREQVKAGKP 113 L+ + L T+QLATL+ A PLE +L + KQ +P L+ +R +V G Sbjct: 60 RRKIRLSTSDLALLTRQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHS 119 Query: 114 LSVALEEEGSQFSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALIYPAFL 173 L+ A++ F LY +MV AGE G L++ L +L+DY E+ Q +R + A+IYP L Sbjct: 120 LADAMKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVL 179 Query: 174 VVGVLGSLALLLAYVVPQFVPIFKDLGVPIPLITEVILNLGEFLSDYGLAVLAGLIALIW 233 V + +++LL+ VVP+ V F + +PL T V++ + + + +G +L L+A Sbjct: 180 TVVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLALLAGFM 239 Query: 234 GMAIRMRDPQRRERRDRRLLGIRVIGPLLQRIEAARLTRTLGTLLTNGVALLQALVIARQ 293 + +R +RR RRLL + +IG + + + AR RTL L + V LLQA+ I+ Sbjct: 240 AFRVMLRQEKRRVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAMRISGD 299 Query: 294 VCTNRALQAQVEQAAESVKGGGTLASAFGAQPLLPDLALQMIEVGEQAGELDTMLMKVAD 353 V +N + ++ A ++V+ G +L A L P + MI GE++GELD+ML + AD Sbjct: 300 VMSNDYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMIASGERSGELDSMLERAAD 359 Query: 354 VFDVEAKRGIDRMLAALVPALTVVMAGMVAVIMLAIMLPLMSLTS 398 D E + L P L V MA +V I+LAI+ P++ L + Sbjct: 360 NQDREFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPILQLNT 404
>BINARYTOXINB#Binary toxin B family signature. Length = 764 Score = 49.7 bits (118), Expect = 4e-08 Identities = 32/150 (21%), Positives = 58/150 (38%), Gaps = 34/150 (22%) Query: 426 TTDATGNEVQGMKVEYFSNTNWSGDAAVTRTEKHVDLDWANDKNLPFESNTSTSDPYASK 485 + + + QG+ YFS+ N+ VT + +L S+ + Sbjct: 37 LLNESESSSQGLLGYYFSDLNFQAPMVVTSST---------TGDLSIPSSELEN------ 81 Query: 486 GSTAGQLNGDTSSTSIRYTGKVTPTQSGEQVFKVRADGAVRLWVNGKKIIDNGDGKPLPG 545 + + S ++G + +S E F AD V +WV+ +++I+ Sbjct: 82 -----IPSENQYFQSAIWSGFIKVKKSDEYTFATSADNHVTMWVDDQEVIN------KAS 130 Query: 546 NSIPPTIPEFAKINLEAGQSYDVKLEYSRR 575 NS KI LE G+ Y +K++Y R Sbjct: 131 NSN--------KIRLEKGRLYQIKIQYQRE 152
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 94.7 bits (235), Expect = 3e-26 Identities = 38/204 (18%), Positives = 76/204 (37%), Gaps = 5/204 (2%) Query: 16 QRRAPKGEKRREELLDAALQVFSLEGYTGASVAKVAAIVGISVAGLLHHFPSKISLLMGV 75 ++ + ++ R+ +LD AL++FS +G + S+ ++A G++ + HF K L + Sbjct: 3 RKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI 62 Query: 76 LERRDEVNGRIAAEV---RTDNTLTGLLGGLRAINRSNATAPGVVRAFSILNAESLL--E 130 E + G + E + L+ L L + S T I+ + E Sbjct: 63 WELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGE 122 Query: 131 NQPAFEWFQTRYERIHAHLLGQFSALVERGEVRADVDLDKIIRQILAMMDGLQIQWLRFP 190 + + + + +E + AD+ + + + GL WL P Sbjct: 123 MAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAP 182 Query: 191 DQVDLVECFDTYIAQVDAAVRARP 214 DL + Y+A + P Sbjct: 183 QSFDLKKEARDYVAILLEMYLLCP 206
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 424 bits (1092), Expect = e-148 Identities = 87/430 (20%), Positives = 174/430 (40%), Gaps = 11/430 (2%) Query: 19 QFFVRAGWILMLAGAGSFFLWASLAPLDQGIAVQGTVVVSGKRKAVQSLDGGVVSKILVS 78 + + +M F+ + L ++ G + SG+ K ++ ++ +V +I+V Sbjct: 55 RRPRLVAYFIMGFLVI-AFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVK 113 Query: 79 EGQLVKEGEPLFRLDQTQVEADVQSLRAQYRMAWASLARWQSERDNLDEVRFPAELIAAG 138 EG+ V++G+ L +L EAD ++ A R+Q +++ + P + Sbjct: 114 EGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPD- 172 Query: 139 QGQDPDPRLALVLEGQ----RQLFSSRRQALAREQSGLQASIEGAGLQLAGMRRARSDLL 194 +P V E + L + ++ + +++ + + + Sbjct: 173 -----EPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYE 227 Query: 195 AQADSLRKQLSNLEPLAQNGFIPGNRLLEFQRQLSQVQQSLAQNAGETGRIEQGIVESRL 254 + + +L + L I + +LE + + + L + +IE I+ ++ Sbjct: 228 NLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKE 287 Query: 255 RLQQQREEYQKEVRSQWADAQVKALTLEQQLASAGFSLQHSAILAPADGIAVNLGVHTEG 314 Q + ++ E+ + L +LA Q S I AP L VHTEG Sbjct: 288 EYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEG 347 Query: 315 AVVRAGETLLEIVPQGTRLEVEGRLPVQLIDKVASHLPVDILFTAFNQSRTPRVSGEVSL 374 VV ETL+ IVP+ LEV + + I + I AF +R + G+V Sbjct: 348 GVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKN 407 Query: 375 ISADQMQDEKTGQPYYVLRTSVGDAALEKLNGLVIKPGMPAEMFVRTGERSLLNYLFKPL 434 I+ D ++D++ G + V+ + + + + GM ++TG RS+++YL PL Sbjct: 408 INLDAIEDQRLGLVFNVIISIEENCLSTGNKNIPLSSGMAVTAEIKTGMRSVISYLLSPL 467 Query: 435 LDRAGSALTE 444 + +L E Sbjct: 468 EESVTESLRE 477
>MPTASEINHBTR#Metalloprotease inhibitor signature. Length = 122 Score = 85.4 bits (211), Expect = 3e-25 Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 3/97 (3%) Query: 2 SLKLPNPDELSGKWRLSLQGKTNEVCELHLNTEVPQLTGDLACAVKWLHEAPTGWFPTPD 61 S +P+ +++G+ + G + L GD+ACA +WL + P W PTPD Sbjct: 27 SFVVPSTAQMAGQLGIEATGS---GVCAGPAEQANALAGDVACAEQWLGDKPVSWSPTPD 83 Query: 62 GLAFTDKEGNRLIHLNNMGEQIYQARLPGGEVLVLGR 98 G+ + EG + HLN E Y R P G + L R Sbjct: 84 GIWLMNAEGTGITHLNRQKEGEYTGRTPSGADVTLQR 120
>CABNDNGRPT#NodO calcium binding signature. Length = 479 Score = 390 bits (1002), Expect = e-134 Identities = 241/478 (50%), Positives = 319/478 (66%), Gaps = 15/478 (3%) Query: 6 ENAAIQLSAATSTSFDQINAFAHQYDRGGNLTINGKPSYSVDQAADYILRDDASWTDRDG 65 ++A LSA TS++++ + F +DRG LT+NGK SYS+DQAA I R++ SW + Sbjct: 10 DDAQHALSANTSSAYNSVYDFLRYHDRGDGLTVNGKTSYSIDQAAAQITRENVSWNGTNV 69 Query: 66 NG-TINLTYTFLTAKPAGFDNSLGTFSAFNAQQKAQAVLSMQSWADVAKVSFTQAASGGD 124 G + NLT+ FL + + G F FNA+Q QA LS+QSW+DVA ++FT+ Sbjct: 70 FGKSANLTFKFLQSVSSIPSGDTG-FVKFNAEQIEQAKLSLQSWSDVANLTFTEVTGNKS 128 Query: 125 GHMTFGNYSNGSAG-----GAAFAYLPSGNSRTDGQSWYLVDNSYKVNTTPDNGNYGRQT 179 ++TFGNY+ ++G A+AY P G SWY + S N P + YGRQT Sbjct: 129 ANITFGNYTRDASGNLDYGTQAYAYYPGNYQGA-GSSWYNYNQSNIRN--PGSEEYGRQT 185 Query: 180 LTHEIGHTLGLSHPGDYNAGEGNPSYKDATYAEDTRGYSVMSYWSESNTDQNFVKGGAPS 239 THEIGH LGL+HPG+YNAGEG+PSY DA YAED+ +S+MSYW E+ T ++ Sbjct: 186 FTHEIGHALGLAHPGEYNAGEGDPSYNDAVYAEDSYQFSIMSYWGENETGADYNG----H 241 Query: 240 YSSAPLLDDITAVQQLYGANMSTRAGDTVYGFNSTAGRDFYSATSASSKVVFSVWDGGGK 299 Y AP++DDI A+Q+LYGANM+TR GD+VYGFNS RDFY+AT +S ++FSVWD GG Sbjct: 242 YGGAPMIDDIAAIQRLYGANMTTRTGDSVYGFNSNTDRDFYTATDSSKALIFSVWDAGGT 301 Query: 300 DTLDFSGFTQNQKINLNAASFSDVGGMVGNVSIAKGVVVENALGGSGNDLLIGNAAANDL 359 DT DFSG++ NQ+INLN SFSDVGG+ GNVSIA GV +ENA+GGSGND+L+GN+A N L Sbjct: 302 DTFDFSGYSNNQRINLNEGSFSDVGGLKGNVSIAHGVTIENAIGGSGNDILVGNSADNIL 361 Query: 360 KGGAGNDIIYGGGGADSLTGGAGADIFVFGASSDSNRAGQDTIRDFVSGQDKIDVSAIST 419 +GGAGND++YGG GAD+L GGAG D FV+G+ DS A D I DF G DKID+SA Sbjct: 362 QGGAGNDVLYGGAGADTLYGGAGRDTFVYGSGQDSTVAAYDWIADFQKGIDKIDLSAFRN 421 Query: 420 LSALQFVN-AFSGHAGEAILNYNQSSNLGSLAIDFTGQGIGDFLVGTVGQALATDIVV 476 L FV F+G E +L ++ ++++ +L + G DFLV VGQA +DI+V Sbjct: 422 EGQLSFVQDQFTGKGQEVMLQWDAANSITNLWLHEAGHSSVDFLVRIVGQAAQSDIIV 479
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 32.1 bits (73), Expect = 0.005 Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 11/91 (12%) Query: 284 LVGVSNFIWLPVGGMLSDRFGRKPLLVAMTLLTIISAYPALSFLALAPSFGHMLEVLLWF 343 L + F PV G LSDRFGR+P+L+ A+ + +A L VL Sbjct: 51 LYALMQFACAPVLGALSDRFGRRPVLLVSLAGA------AVDYAIMA--TAPFLWVLYIG 102 Query: 344 SFLYGLYNGAMIPALT---EIMPVEVRVAGF 371 + G+ A +I + R F Sbjct: 103 RIVAGITGATGAVAGAYIADITDGDERARHF 133
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 61.5 bits (149), Expect = 6e-13 Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 16/122 (13%) Query: 134 LNSSMLFGSGDAMPSDKAFTIIEKVAGIVKRFDNP---IHVEGFTDDQPISTAQFPTNWE 190 L S +LF A + ++++ + D + V G+TD I + + N Sbjct: 217 LKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDR--IGSDAY--NQG 272 Query: 191 LSSARSASIVRMLAMDGVNPARLASVGYGEFQPIVPNTSTAGR---------AKNRRVVL 241 LS R+ S+V L G+ ++++ G GE P+ NT + A +RRV + Sbjct: 273 LSERRAQSVVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEI 332 Query: 242 VI 243 + Sbjct: 333 EV 334
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 58.7 bits (142), Expect = 2e-11 Identities = 31/147 (21%), Positives = 53/147 (36%), Gaps = 7/147 (4%) Query: 2 AVKVLVVDDSGFFRRRVTEILSSDPNIVVVGTATNGKEAIEQALALKPDVITMDYEMPMM 61 +LV DD R + + LS V +N A D++ D MP Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVR--ITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 62 DGITAVRHIMQRIP-TPVLMFSSLTHEGARVTLDALDAGAVDFLPKNF--EDISRNPQKV 118 + + I + P PVL+ S+ + A + GA D+LPK F ++ + Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAI--KASEKGAYDYLPKPFDLTELIGIIGRA 118 Query: 119 KQLLCEKINSISRSNRRSSGFGSASAA 145 + + + ++ SAA Sbjct: 119 LAEPKRRPSKLEDDSQDGMPLVGRSAA 145
>PF06580#Sensor histidine kinase Length = 349 Score = 47.9 bits (114), Expect = 9e-08 Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 10/79 (12%) Query: 466 ETDLDKNLVEALADPLV--HLVRNAVDHGIETPEEREATGKSRGGRVILSAEQEGDHILL 523 E ++ +++ P++ LV N + HGI +GG+++L ++ + L Sbjct: 243 ENQINPAIMDVQVPPMLVQTLVENGIKHGIA--------QLPQGGKILLKGTKDNGTVTL 294 Query: 524 SISDDGKGMDPNVLRSIAV 542 + + G N S Sbjct: 295 EVENTGSLALKNTKESTGT 313
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 89.5 bits (222), Expect = 4e-24 Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 3/105 (2%) Query: 6 KILIVDDFSTMRRIIKNLLRDLGFTNTSEADDGLTALPMLQSGAFDFLVTDWNMPGMSGI 65 IL+ DD + +R ++ L G+ + T + +G D +VTD MP + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 66 DLLREVRKDERLKSLPVLMVTAEAKREQIIEAAQAGVNGYVVKPF 110 DLL ++K LPVL+++A+ I+A++ G Y+ KPF Sbjct: 64 DLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPF 106
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 75.3 bits (185), Expect = 2e-16 Identities = 26/134 (19%), Positives = 56/134 (41%), Gaps = 3/134 (2%) Query: 10 ILIADDSTSDRLLLSTIVARQGHRVLSAGNGVEAVAIFEAESPQLILMDAMMPVMDGFEA 69 IL+ADD + R +L+ ++R G+ V N A L++ D +MP + F+ Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 70 ARRIKAMAGESLVPIIFLTSLTEGEALARCLDAGGDDFMSKPYNPL-VLAAKLNAMNRLR 128 RIK + +P++ +++ + + G D++ KP++ ++ A+ + Sbjct: 66 LPRIKKARPD--LPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 129 VLHETVRQQRDQIA 142 + Sbjct: 124 RRPSKLEDDSQDGM 137
>FLGFLIJ#Flagellar FliJ protein signature. Length = 147 Score = 43.7 bits (102), Expect = 3e-08 Identities = 36/134 (26%), Positives = 69/134 (51%) Query: 9 LAPVVEMAEAAERTAAQRLGHFQGQVNLANNKLQELDQFRQDYQQQWLQRGSAGVSGQWL 68 LA + ++AE AA+ LG + A +L+ L ++ +Y+ SAG++ Sbjct: 7 LATLKDLAEKEVEDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRNNLNSDMSAGITSNRW 66 Query: 69 LGYQRFLSQLDVAVAQQYKSLEWHKANLDRARSAWQDCYARVEGLRKLVQRYMDEARRLE 128 + YQ+F+ L+ A+ Q + L +D A ++W++ R++ + L +R A E Sbjct: 67 INYQQFIQTLEKAITQHRQQLNQWTQKVDIALNSWREKKQRLQAWQTLQERQSTAALLAE 126 Query: 129 DKREQKLLDELSQR 142 ++ +QK +DE +QR Sbjct: 127 NRLDQKKMDEFAQR 140
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 49.8 bits (118), Expect = 2e-09 Identities = 45/199 (22%), Positives = 85/199 (42%), Gaps = 14/199 (7%) Query: 39 PEPELVDEPAEMEEVPLDEVQPLTLEELESIRQEAWNEGFATGEKEGFHSTQLKVRQE-- 96 P E EE ++E +P ++L ++ +A +G+ G EG + QE Sbjct: 17 PPQAEFVPIVEPEETIIEEAEPSLEQQLAQLQMQAHEQGYQAGIAEGRQQGHKQGYQEGL 76 Query: 97 ----------AEVVLAAKVASLEQLMGNLLAPIAEQDTQIEKAVIYLVEHIARKVIQREL 146 A+ A A ++QL+ + D+ I ++ + AR+VI + Sbjct: 77 AQGLEQGLAEAKSQQAPIHARMQQLVSEFQTTLDALDSVIASRLMQMALEAARQVIGQTP 136 Query: 147 VTDSAQIASVLRDALKLLPMGAQNVRIFINPQDFLLVKAM--RERHEESWKIVEDEDLLP 204 D++ + ++ L+ P+ + ++ ++P D V M W++ D L P Sbjct: 137 TVDNSALIKQIQQLLQQEPLFSGKPQLRVHPDDLQRVDDMLGATLSLHGWRLRGDPTLHP 196 Query: 205 GGCRIETEHSRIDASVETR 223 GGC++ + +DASV TR Sbjct: 197 GGCKVSADEGDLDASVATR 215
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 300 bits (769), Expect = e-103 Identities = 105/336 (31%), Positives = 205/336 (61%) Query: 3 ERAMVAKLSKVEKAAVLLLSLGETDAAQVLRHMGPKEVQKVGVAMAQMRNVHREQVEEVM 62 E V+ L+ +KAA+LL+S+G +++V +++ +E++ + +A++ + E + V+ Sbjct: 8 EILDVSALTGKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKDNVL 67 Query: 63 SEFVDIVGDQTSLGVGSDGYIRKMLTQALGEDKANGLIDRILLGGNTSGLDSLKWMEPRA 122 EF +++ Q + G Y R++L ++LG KA +I+ + + + ++ +P Sbjct: 68 LEFKELMMAQEFIQKGGIDYARELLEKSLGTQKAVDIINNLGSALQSRPFEFVRRADPAN 127 Query: 123 VADVIRFEHPQIQAIVVAYLDADQAGEVLGHFDHKVRLDIILRVSSLNTVQPAALKELNQ 182 + + I+ EHPQ A++++YLD +A +L +V+ ++ R++ ++ P ++E+ + Sbjct: 128 ILNFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVREVER 187 Query: 183 ILEKQFSGNANTSRTTLGGIKRAADIMNFLDSSIEGSLMDSIREVDEDLSVQIEDLMFVF 242 +LEK+ + ++ T+ GG+ +I+N D E +++S+ E D +L+ +I+ MFVF Sbjct: 188 VLEKKLASLSSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEIKKKMFVF 247 Query: 243 NNLSDVDDRGIQALLREVSSDVLVLALKGSDEGIKEKIFKNMSKRASELLRDDLEAKGPV 302 ++ +DDR IQ +LRE+ L ALK D ++EKIFKNMSKRA+ +L++D+E GP Sbjct: 248 EDIVLLDDRSIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDMEFLGPT 307 Query: 303 RVSDVETAQKEILTIARRMAEAGEIVLGGKGGEEMI 338 R DVE +Q++I+++ R++ E GEIV+ G E+++ Sbjct: 308 RRKDVEESQQKIVSLIRKLEEQGEIVISRGGEEDVL 343 Score = 28.6 bits (64), Expect = 0.033 Identities = 20/122 (16%), Positives = 47/122 (38%), Gaps = 16/122 (13%) Query: 121 RAVADVIRFEHPQIQAIVVAYLDADQAGEVLGHFDHKVRLDIILRVSSLNTVQPAALKEL 180 + + DV Q AI++ + ++ + +V + + + ++ L T+ + Sbjct: 7 KEILDVSALTGKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITS---ELK 63 Query: 181 NQILEKQFSGNANTSRTTLGGI-------------KRAADIMNFLDSSIEGSLMDSIREV 227 + +L + GGI ++A DI+N L S+++ + +R Sbjct: 64 DNVLLEFKELMMAQEFIQKGGIDYARELLEKSLGTQKAVDIINNLGSALQSRPFEFVRRA 123 Query: 228 DE 229 D Sbjct: 124 DP 125
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 515 bits (1328), Expect = e-180 Identities = 197/576 (34%), Positives = 299/576 (51%), Gaps = 40/576 (6%) Query: 27 LENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTLTAA 86 LE L+ + +I L+V +A+VAI A+VLW++ PDYR L+ +L+ D I+ LT Sbjct: 13 LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQM 72 Query: 87 NINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFMEATR 146 NI Y SGA+ V +D V R++LAQ G+ + +GFE+LD+++ G SQF E Sbjct: 73 NIPYRFANGSGAIEVPADKVHELRLRLAQQGLPK-GGAVGFELLDQEK-FGISQFSEQVN 130 Query: 147 YRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEPSQV 206 Y+R LEGELARTI L VK ARVHLA+PK S+FVR+ + PSASV V L GR+L+ Q+ Sbjct: 131 YQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQI 190 Query: 207 MAIINLVATSVPELSKSQITVVDQKGALLSDQAENSELTMAGKQFDYSRRMEGMLTQRVQ 266 A+++LV+++V L +T+VDQ G LL+ Q+ S + Q ++ +E + +R++ Sbjct: 191 SAVVHLVSSAVAGLPPGNVTLVDQSGHLLT-QSNTSGRDLNDAQLKFANDVESRIQRRIE 249 Query: 267 NILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPA----LRSEQSVNEQRSSSSSSG 322 IL PI+GN A+V+A +DF+ E T E ++P+ A LRS Q ++ + G Sbjct: 250 AILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPG 309 Query: 323 GVPGALSNQPPGPATAPQTAGGGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPYPA 382 GVPGALSNQP P AP P N Q +T + + P Sbjct: 310 GVPGALSNQPAPPNEAPIAT--------------PPTNQQNAQNTPQTSTSTNSNSAGPR 355 Query: 383 DKRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVTRAPWSAADLAR 442 + T N+E+DR+I HTK G + RLSVAVVV+ + P +A + + Sbjct: 356 STQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADG-----KPLPLTADQMKQ 410 Query: 443 FTRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASFYSQPWFWDIVKQAVGVIFILI 502 L ++A+GF RGD+++V+N PFS+ E F+ Q F D + A + +L+ Sbjct: 411 IEDLTREAMGFSDKRGDTLNVVNSPFSAV-DNTGGELPFWQQQSFIDQLLAAGRWLLVLV 469 Query: 503 LVF----GVLRPVLNNIT-NGKRKELAGFGGDAELGGMGGLDGELSNDRVSLGGPQSILL 557 + + +RP L K + ++ LS D + L Sbjct: 470 VAWILWRKAVRPQLTRRVEEAKAAQEQAQVRQE---TEEAVEVRLSKDEQLQQRRANQRL 526 Query: 558 PSPTEGYDAQLNAIKSLVAEDPGRVAQVVKEWINTD 593 G + I+ + DP VA V+++W++ D Sbjct: 527 -----GAEVMSQRIREMSDNDPRVVALVIRQWMSND 557
>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE signature. Length = 103 Score = 77.0 bits (189), Expect = 6e-22 Identities = 39/92 (42%), Positives = 52/92 (56%) Query: 20 QMDAMSAPKPVSGAQEAGASSFADMLGQAVNKVAQTQQASSQLANAFEVGKSGVDLTDVM 79 Q+ A + + SFA L A+++++ TQ A+ A F +G+ GV L DVM Sbjct: 12 QLQATAMSARAQESLPQPTISFAGQLHAALDRISDTQTAARTQAEKFTLGEPGVALNDVM 71 Query: 80 ISSQKASVSFQALTQVRNKLVQAYQDIMQMPV 111 QKASVS Q QVRNKLV AYQ++M M V Sbjct: 72 TDMQKASVSMQMGIQVRNKLVAAYQEVMSMQV 103
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 495 bits (1276), Expect = e-175 Identities = 178/479 (37%), Positives = 256/479 (53%), Gaps = 20/479 (4%) Query: 5 VLLVEDDRSLREALGETLELAGYDYKAVGSAEEALVAAEATPFSLVISDVNMPGMDGHQL 64 +L+ +DD ++R L + L AGYD + +A A LV++DV MP + L Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 65 LSLLRSRHPQLPVLLMTAHGAVERAVDAMRQGAADYLVKPFEPKALIALVAR------HA 118 L ++ P LPVL+M+A A+ A +GA DYL KPF+ LI ++ R Sbjct: 66 LPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKRR 125 Query: 119 LGRLEPAERDGP--IAVEPASIQLLNLASRVAKSDSTVLISGESGTGKEVLARFIHQNSP 176 +LE +DG + A ++ + +R+ ++D T++I+GESGTGKE++AR +H Sbjct: 126 PSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHDYGK 185 Query: 177 RADKPFIAINCAAIPDNMLEATLFGHEKGSFTGAIAAQAGKFEQADGGTILLDEISEMPL 236 R + PF+AIN AAIP +++E+ LFGHEKG+FTGA G+FEQA+GGT+ LDEI +MP+ Sbjct: 186 RRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDMPM 245 Query: 237 GLQAKLLRVLQEREVERVGARKPIVLDIRVVATTNRDLAGEVAAGRFREDLFYRLSVFPL 296 Q +LLRVLQ+ E VG R PI D+R+VA TN+DL + G FREDL+YRL+V PL Sbjct: 246 DAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLNVVPL 305 Query: 297 AWQALRQRTADILPLAERLLAKHVNKMKHAPVRLSAEAQQCLVSYPWPGNVRELDNAVQR 356 LR R DI L + + K R EA + + ++PWPGNVREL+N V+R Sbjct: 306 RLPPLRDRAEDIPDLVRHFVQQ-AEKEGLDVKRFDQEALELMKAHPWPGNVRELENLVRR 364 Query: 357 ALILQQGGVIQAQDFCLSGPVTSLPVAASVEAA--------VAVTGTTVAENAGAGVSPE 408 L VI + AA AV A G + Sbjct: 365 LTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFGDALP 424 Query: 409 SVGALGDDLRRHEFQMIIDTLRSERGRRKEAAERLGISPRTLRYKLAQMRDAGMDVEAY 467 G L E+ +I+ L + RG + +AA+ LG++ TLR K +R+ G+ V Sbjct: 425 PSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKK---IRELGVSVYRS 480
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 38.8 bits (90), Expect = 6e-05 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 3/69 (4%) Query: 2 SFNTAISGIHAANKRLEVAGNNIANVGTLGFKSSRAQFSALYASAQLGAGQHAVGDGVRL 61 N A+SG++AA L A NNI++ G+ A S G VG+GV + Sbjct: 3 LINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTT-IMAQANSTLGAGGW--VGNGVYV 59 Query: 62 ASVQQNFNQ 70 + VQ+ ++ Sbjct: 60 SGVQREYDA 68 Score = 34.9 bits (80), Expect = 8e-04 Identities = 12/41 (29%), Positives = 18/41 (43%) Query: 540 LEGSNVVLADELIALIQAQTAYQANSKAISTEVTLMQTLIQ 580 S V L +E L + Q Y AN++ + T + LI Sbjct: 504 QSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALIN 544
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 38.8 bits (90), Expect = 4e-05 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 4/70 (5%) Query: 2 SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGNTSVGSGVR 61 N +SGL AA +L+ NNI++ G+ A + VG+GV Sbjct: 3 LINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANST----LGAGGWVGNGVY 58 Query: 62 TAAVSQQFSQ 71 + V +++ Sbjct: 59 VSGVQREYDA 68 Score = 36.9 bits (85), Expect = 2e-04 Identities = 15/47 (31%), Positives = 23/47 (48%) Query: 395 ITGQALEESNVDLTMELVNLIKAQSNYQANAKTISTQSTIMQTTIQM 441 ++ Q S V+L E NL + Q Y ANA+ + T + I I + Sbjct: 499 LSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 34.5 bits (79), Expect = 9e-05 Identities = 8/38 (21%), Positives = 21/38 (55%) Query: 107 NVNVVEEMADMISASRSFQTNAEIMNTAKSMMQKVLTL 144 VN+ EE ++ + + NA+++ TA ++ ++ + Sbjct: 508 GVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545 Score = 28.0 bits (62), Expect = 0.013 Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 14/72 (19%) Query: 8 NIAGSAMSAQTTRLNTTASNIANAETVSSSMDQTYRARHPVFATVMQGQQSTGGSLFQDQ 67 N A S ++A LNT ++NI++ + T + Q + S Sbjct: 5 NNAMSGLNAAQAALNTASNNISSYNVAGYTRQ-----------TTIMAQAN---STLGAG 50 Query: 68 GEAGQGVQVNGI 79 G G GV V+G+ Sbjct: 51 GWVGNGVYVSGV 62
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 45.4 bits (107), Expect = 3e-08 Identities = 16/70 (22%), Positives = 28/70 (40%) Query: 21 QAAWDIVGESGVRGMSLRECARRANVSHAAPAHHFGSLENLLAEVVADGYERMADVIIAV 80 A + + GV SL E A+ A V+ A HF +L +E+ + ++ + Sbjct: 18 DVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELELEY 77 Query: 81 QQELDDTLLG 90 Q + L Sbjct: 78 QAKFPGDPLS 87
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 79.7 bits (196), Expect = 7e-20 Identities = 56/226 (24%), Positives = 101/226 (44%), Gaps = 22/226 (9%) Query: 7 VLITGASSGIGAVYAERFARRGHNLVTVARDKARLDALAARLREENGVAVEVIQADLTRS 66 ITGA+ GIG A A +G ++ V + +L+ + + L+ E E AD+ S Sbjct: 11 AFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAE-ARHAEAFPADVRDS 69 Query: 67 ADLTALETRLREDTN-IDVLINNAGIAQSGGFVQQNAESIDKLVALNIVALTRLAAAVAP 125 A + + R+ + ID+L+N AG+ + G + E + ++N + + +V+ Sbjct: 70 AAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSK 129 Query: 126 RFAQSGSGSIVNLGSVVGLAPEFGMSVYGATKAYVLFLSQGMNVELAPKGVYVQAVLPAA 185 SGSIV +GS P M+ Y ++KA + ++ + +ELA + V P + Sbjct: 130 YMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPGS 189 Query: 186 TRTE----IWE----------------RAGIDLNTIAEVMDVDELV 211 T T+ +W + GI L +A+ D+ + V Sbjct: 190 TETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAV 235
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 92.8 bits (230), Expect = 2e-24 Identities = 51/188 (27%), Positives = 82/188 (43%), Gaps = 10/188 (5%) Query: 7 RTAIVTGASSGIGRATAEALARAGYTVFGTSRKIGDSDAQVSMLTC----------NVTA 56 + A +TGA+ GIG A A LA G + + VS L +V Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 57 DDSVRALVAAVLAQTGRIDLLVNNAGIGMLGGAEEFSIPQVQALFDVNLFGVMRMTNAVL 116 ++ + A + + G ID+LVN AG+ G S + +A F VN GV + +V Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128 Query: 117 PSMRQRGQGRIINIGSVLGLIPAPYSAHYSAVKHALEGYSESLDHEIRAFNVRVSVIEPA 176 M R G I+ +GS +P A Y++ K A +++ L E+ +N+R +++ P Sbjct: 129 KYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPG 188 Query: 177 YVRTVFDQ 184 T Sbjct: 189 STETDMQW 196
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 105 bits (262), Expect = 2e-29 Identities = 80/253 (31%), Positives = 123/253 (48%), Gaps = 14/253 (5%) Query: 3 LEGKIAVVTGASKGIGAGIAKALGAEGARVI-VNYATGKADADAVVAWIAEHGGSAFAVQ 61 +EGKIA +TGA++GIG +A+ L ++GA + V+Y K + VV+ + A A Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEK--VVSSLKAEARHAEAFP 63 Query: 62 ADMSQSADVIRLFETVGTKYGALDILVNNAGVAVFQMIDDLTEEAFHTQFNLNVLGYLLA 121 AD+ SA + + + + G +DILVN AGV +I L++E + F++N G A Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 122 VREAVKLLGP--TGSIINISSILSTDPYLASSVYAATKGAVDTLTFALARELGARGIRVN 179 R K + +GSI+ + S + P + + YA++K A T L EL IR N Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCN 183 Query: 180 SILPGHTNTPATHGHFAGELGE---------KILAGTPLGRFGEPEDIAPLAVFLASQDS 230 + PG T T +A E G G PL + +P DIA +FL S + Sbjct: 184 IVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQA 243 Query: 231 HWVTGESIRASGG 243 +T ++ GG Sbjct: 244 GHITMHNLCVDGG 256
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 90.9 bits (225), Expect = 4e-24 Identities = 65/254 (25%), Positives = 114/254 (44%), Gaps = 19/254 (7%) Query: 3 VIVITGGSRGIGASAAEHVARRGMGVILTYNANPEAAATVVERIAQAGGKAVALRLDVAD 62 + ITG ++GIG + A +A +G + + NPE VV + A A DV D Sbjct: 10 IAFITGAAQGIGEAVARTLASQGAHI-AAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 63 VGSFEAFRASVCSVLQEVWGVATLSGLVNNAGYGLFNPLETVSEAQFDGLFNVHLKGPFF 122 A + +E+ + LVN AG + ++S+ +++ F+V+ G F Sbjct: 69 S---AAIDEITARIEREM---GPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFN 122 Query: 123 LTQTLLPLMA--ENASIVNLTSATTRVATAGVAPYAAFKGGLEVLTRYMAVEFGERRIRA 180 ++++ M + SIV + S V +A YA+ K + T+ + +E E IR Sbjct: 123 ASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRC 182 Query: 181 NAVSPGAIRTELGGGL--NDEFEAMLAAQTA--------LGRVGEPQDVARVIAMLLSEE 230 N VSPG+ T++ L ++ + + L ++ +P D+A + L+S + Sbjct: 183 NIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQ 242 Query: 231 AGWINAQTIEVAGG 244 AG I + V GG Sbjct: 243 AGHITMHNLCVDGG 256
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 61.2 bits (148), Expect = 5e-14 Identities = 33/161 (20%), Positives = 56/161 (34%), Gaps = 8/161 (4%) Query: 6 REAILLAARNIAQSQGYNGLNFRDLAAQVGIKPASIYYHFPSKADLGVAVARRYWQD-GA 64 R+ IL A + QG + + ++A G+ +IY+HF K+DL + + G Sbjct: 13 RQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGE 72 Query: 65 AALETISAETPDPGEALQRFPEVFRRSLEVENRLCLGTFVGAETDNLPPEMTEEMQLFAQ 124 LE + DP L+ S E R L + EM Q Sbjct: 73 LELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQRN 132 Query: 125 VNIAWLSKLLVAAKVC-------APSDSEVRAQAIFSAVAG 158 + + ++ K C A + A + ++G Sbjct: 133 LCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISG 173
>adhesinmafb#Neisseria meningitidis: adhesin MafB signature. Length = 467 Score = 27.3 bits (60), Expect = 0.010 Identities = 12/45 (26%), Positives = 18/45 (40%) Query: 53 AAGFSGSLIVAEFESQSAAKAWAEADPFVAAGVYANVVVKPFKQV 97 G GS+ E ++ A W + +P A V A V +V Sbjct: 278 VIGGLGSVAGFEKNTREAVDRWIQENPNAAETVEAVFNVAAAAKV 322
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 105 bits (263), Expect = 2e-28 Identities = 39/116 (33%), Positives = 63/116 (54%) Query: 4 LLLIDDDQELCELLSSWLSQEGFQVRACHDGNSARKALADAAPAAVVLDVMLPDGSGLEL 63 +L+ DDD + +L+ LS+ G+ VR + + + +A VV DV++PD + +L Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 64 LKQLRAEHPDLPVVMLSARGEPLDRILGLELGADDYLAKPCDPRELTARLRAVLRR 119 L +++ PDLPV+++SA+ + I E GA DYL KP D EL + L Sbjct: 66 LPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
>NEISSPPORIN#Neisseria sp. porin signature. Length = 348 Score = 29.2 bits (65), Expect = 0.008 Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 1/20 (5%) Query: 1 MRKTLIALMFATALPTIAMA 20 M+K+LIAL A ALP AMA Sbjct: 1 MKKSLIALTLA-ALPVAAMA 19
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 27.1 bits (60), Expect = 0.011 Identities = 13/45 (28%), Positives = 20/45 (44%) Query: 1 MDTIRRFSSFAEFYPFYLAEHSSATSRRLHFVGTSLVIFLLAFGV 45 +DT R EF P +L + SRR V ++ FL+ + Sbjct: 29 LDTPVREKDENEFLPAHLELIETPVSRRPRLVAYFIMGFLVIAFI 73
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 83.7 bits (207), Expect = 7e-21 Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 1/120 (0%) Query: 2 KLLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVAQFNHDLAVIDLGLPGIGGLD 61 +LV +D+A +R L L+ AG+ V +NA +A + DL V D+ +P D Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 LIRQLRALGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEE-LEARLNALLRRSS 120 L+ +++ P+L+++A+ + ++ GA DY+ KPF E + AL Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124
>ENTSNTHTASED#Enterobactin synthetase component D signature. Length = 234 Score = 107 bits (268), Expect = 1e-30 Identities = 68/227 (29%), Positives = 115/227 (50%), Gaps = 17/227 (7%) Query: 17 LLRHWPLPQALPGAVLVSGHFDPLKLADGDFQRCELQMP--ASIQRSVAKRQTEFLAGRL 74 L H+PLP A G L FD + D L +P ++ + KR+ E LAGR+ Sbjct: 2 LTSHFPLPFA--GHRLHIVDFDASSFREHD----LLWLPHHDRLRSAGRKRKAEHLAGRI 55 Query: 75 CAREAMRQLDGRLHVPAVGEDRAPVWPSDVCGSITHSTGWAAAVVAHKQQWRGLGLDTEN 134 A A+R++ G VP +G+ R P+WP + GSI+H A AV++ + +G+D E Sbjct: 56 AAVHALREV-GVRTVPGMGDKRQPLWPDGLFGSISHCATTALAVISR----QRIGIDIEK 110 Query: 135 LLSHDRASRLAGEILTAAELAEMAAGPEDQIALRVTLTFSIKEALFKALYPIVHKRFYFE 194 ++S A+ LA I+ + E + A L +TL FS KE+++KA + F Sbjct: 111 IMSQHTATELAPSIIDSDERQILQAS-LLPFPLALTLAFSAKESVYKA-FSDRVTLPGFN 168 Query: 195 DAQLLEWSADGHARLQLLIDLSSEWHAGKELDGQFSVQDDHLLSLVA 241 A++ +A H L LL ++ A + + ++ +D+ +++LV+ Sbjct: 169 SAKVTSLTA-THISLHLLPAFAAT-MAERTVRTEWFQRDNSVITLVS 213
>2FE2SRDCTASE#Ferric iron reductase signature. Length = 262 Score = 76.2 bits (187), Expect = 1e-18 Identities = 60/229 (26%), Positives = 95/229 (41%), Gaps = 30/229 (13%) Query: 34 DDPRP--VMTLPDLLRPERLDQILLT----VYGPQ-LMPDQLPVLVSQWAKFYFMQLIPP 86 D+P P MTL P L +L +Y Q +M + L+S WA++Y ++PP Sbjct: 47 DEPAPLNAMTLAQWSSPNVLSSLLAVYSDHIYRNQPMMIRENKPLISLWAQWYIGLMVPP 106 Query: 87 VLVASLVHDWHWPLQLEQVALALDERGVPSGI-------RLAGEGSVWRGIAVDPFQRFA 139 +++A L + + E E G + + A S P R Sbjct: 107 LMLALLTQEKALDVSPEHFHAEFHETGRVACFWVDVCEDKNATPHS--------PQHRME 158 Query: 140 GLLDDNLQPFITSLSAYGGLSAAVLWSSAGDYLEGCLAQLATCSDASLAAGL--ALLSEK 197 L+ L P + +L A G ++ ++WS+ G + L ++ + L AL EK Sbjct: 159 TLISQALVPVVQALEATGEINGKLIWSNTGYLINWYLTEMKQLLGEATVESLRHALFFEK 218 Query: 198 KRPDGRTNPLFQTVRYVPQARGGEPRRQRRVCCLSHRVEWVGRCEHCPL 246 +G NPL++TV R G RR CC +R+ V +C C L Sbjct: 219 TLTNGEDNPLWRTV----VLRDG--LLVRRTCCQRYRLPDVQQCGDCTL 261
>PF06580#Sensor histidine kinase Length = 349 Score = 37.9 bits (88), Expect = 8e-05 Identities = 19/107 (17%), Positives = 34/107 (31%), Gaps = 25/107 (23%) Query: 431 VQNLVSNALRHA------DNEVRISYRLEAQQCRIDVDDDGPGVPEQAWDQIFTPFMRID 484 VQ LV N ++H ++ + + ++V++ G + + Sbjct: 260 VQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKE---------- 309 Query: 485 DSRTRASGGHGLGLSIVR-RIIHWHEGRALIGHSVSLGGACFSLTWP 530 G GL VR R+ + A I S G + P Sbjct: 310 --------STGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 79.5 bits (196), Expect = 3e-19 Identities = 31/146 (21%), Positives = 63/146 (43%), Gaps = 1/146 (0%) Query: 9 HVLIVEDDQRLAELTSDYLQNHGLRVSIEGDGALAAARIIAEQPDLVILDLMLPGEDGFS 68 +L+ +DD + + + L G V I + A I A DLV+ D+++P E+ F Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 69 ICRSVRDRYDG-PILMLTARTDDTDHIEGLDTGADDFVCKPVHPRVLLARIKALLRRSEA 127 + ++ P+L+++A+ I+ + GA D++ KP L+ I L + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 128 PQVPAAELRRLVFGPLVVDNALREAW 153 + + + A++E + Sbjct: 125 RPSKLEDDSQDGMPLVGRSAAMQEIY 150
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 26.9 bits (59), Expect = 0.038 Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 4/45 (8%) Query: 54 IEGTKTPIGGAAGAVVGGVGGSAIGGGRGSIVAAVIGAVAGGLLG 98 I+ + T I +V G+ +A S+V A + A+ G + G Sbjct: 364 IDASLTTISTVLASVSSGISAAA----TTSLVGAPVSALVGAVTG 404
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 28.9 bits (64), Expect = 0.017 Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 17/86 (19%) Query: 84 SAKGQQLAARPFAAMTFFWPTLERQVRIEGRVEKVSAQESDAYYQVRPLGSRLGAWASPQ 143 S +GQ +++ + F E ++ + ++ + Q+ A Q+ L +R G+WA Sbjct: 580 SQQGQPVSSETYG---FLNRLTEAKITLSQQLNTLQQQQESAKAQLSILINRSGSWAD-- 634 Query: 144 SRVIADRDELEGLIRQTEQRFADTRP 169 + RQ+ QRF TRP Sbjct: 635 ------------VARQSLQRFDSTRP 648
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 55.7 bits (134), Expect = 9e-11 Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 9/80 (11%) Query: 212 TAVLILGHADTSGPTDANQKISQERAQSVAAIFRLSGLERNRLSQRGMGAVMPRAAN--D 269 +V++LG+ D G NQ +S+ RAQSV G+ +++S RGMG P N D Sbjct: 253 GSVVVLGYTDRIGSDAYNQGLSERRAQSVVDYLISKGIPADKISARGMGESNPVTGNTCD 312 Query: 270 SLQGR-------ALNRRVEI 282 +++ R A +RRVEI Sbjct: 313 NVKQRAALIDCLAPDRRVEI 332
>CHANNELTSX#Nucleoside-specific channel-forming protein Tsx signature. Length = 294 Score = 291 bits (746), Expect = e-100 Identities = 150/308 (48%), Positives = 191/308 (62%), Gaps = 26/308 (8%) Query: 20 LFAAAAALPCTSVLAAPATAEDSAQGEALSPPASPKEGKGAYFSDWFNQDLTLIGSKDIS 79 L AA A + ++ AA A D Q Y SDW++Q + ++GS Sbjct: 5 LLAAGAVVALSTTFAAGAAENDKPQ----------------YLSDWWHQSVNVVGSYHTR 48 Query: 80 FGPKPNDDIYLEYEYFGRKGPFELYGYVDVPKILGIGNDNDKGVWDHGSPLFMEHEPRIS 139 FGP+ +D YLEYE F +K F+ YGY+D P G GN KG+W+ GSPLFME EPR S Sbjct: 49 FGPQIRNDTYLEYEAFAKKDWFDFYGYIDAPVFFG-GNSTAKGIWNKGSPLFMEIEPRFS 107 Query: 140 IDYLAGRSLAVGPFKEWYVAFDWIYDHGSNTANRANTLYSGLGTDIDTHSRVNLSANFYG 199 ID L L+ GPFKEWY A ++IYD G N + +T Y GLGTDIDT ++LS N Y Sbjct: 108 IDKLTNTDLSFGPFKEWYFANNYIYDMGRNDSQEQSTWYMGLGTDIDTGLPMSLSLNVYA 167 Query: 200 RYQWENYGASNEYSWDGYRAQLKYIVPISTFDNGASLTYIGFTNFDFGSDLKNDP----- 254 +YQW+NYGASNE WDGYR ++KY VP++ G SL+YIGFTNFD+GSDL +D Sbjct: 168 KYQWQNYGASNENEWDGYRFKVKYFVPLTDL-WGGSLSYIGFTNFDWGSDLGDDNFYDLN 226 Query: 255 ---ARTGNSTVATNVLLYAFTHLRFTLVGRYFHNGGNWQDGSELNFGDGNFRARSDGWGY 311 ART NS ++++L + H +++V RYFHNGG W D ++LNFGDG F RS GWG Sbjct: 227 GKHARTSNSIASSHILALNYAHWHYSIVARYFHNGGQWADDAKLNFGDGPFSVRSTGWGG 286 Query: 312 YAGVGYQF 319 Y VGY F Sbjct: 287 YFVVGYNF 294
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 94.0 bits (233), Expect = 4e-25 Identities = 69/245 (28%), Positives = 112/245 (45%), Gaps = 18/245 (7%) Query: 4 LKQKRAVITGAGSGIGAAIARAYAAEGARLVLGDRDADSLAKIAAECRQLGAQVQECVAD 63 ++ K A ITGA GIG A+AR A++GA + D + + L K+ + + + AD Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 64 VGSVDGAQASVDACVEQFGGIDILVNNAGMLTQARCVDLTLDMWNDMLRIDLTSVFVASQ 123 V + G IDILVN AG+L L+ + W ++ T VF AS+ Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 124 RALPHMIAQRWGRIINVASQLGIKGGAELTHYAAAKAGVIGFSKSLALEVAKDNVLVNAI 183 +M+ +R G I+ V S + YA++KA + F+K L LE+A+ N+ N + Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 184 APGPIETPL--------------VAGISSAWKTAKAAELPLGRFGLAEEVAPVAVLLASE 229 +PG ET + + G +KT +PL + ++A + L S Sbjct: 186 SPGSTETDMQWSLWADENGAEQVIKGSLETFKTG----IPLKKLAKPSDIADAVLFLVSG 241 Query: 230 PGGNL 234 G++ Sbjct: 242 QAGHI 246
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 124 bits (313), Expect = 8e-37 Identities = 78/254 (30%), Positives = 122/254 (48%), Gaps = 11/254 (4%) Query: 4 KVAVITGAASGIGQALVVAFARQGVAVAGGFYPADPHDPDETRRLVAEAGGECLMLPLDV 63 K+A ITGAA GIG+A+ A QG +A Y + + + E P DV Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAE--AFPADV 66 Query: 64 TFTESVDDLAAQAVKAFGRIDYAVANAGLLRRAPLLEMTDERWNEMLDVDLTGVMRTFRA 123 + ++D++ A+ + G ID V AG+LR + ++DE W V+ TGV R+ Sbjct: 67 RDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRS 126 Query: 124 AVRHM--GEGGALVAISSIAGGVYGWQDHSHYAAAKAGVPGLCRSLAVELAAKGIRCNAV 181 ++M G++V + S GV + YA++KA + L +ELA IRCN V Sbjct: 127 VSKYMMDRRSGSIVTVGSNPAGV-PRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 182 IPGLIETP--QSL----DSTNSLGPEGLAQAAKAIPLGRVGRADEVAALVRFLCSDEASY 235 PG ET SL + + L IPL ++ + ++A V FL S +A + Sbjct: 186 SPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGH 245 Query: 236 LTGQSIVIDGGLTV 249 +T ++ +DGG T+ Sbjct: 246 ITMHNLCVDGGATL 259
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 37.1 bits (86), Expect = 1e-04 Identities = 33/160 (20%), Positives = 60/160 (37%), Gaps = 13/160 (8%) Query: 47 LPEIGRHFSWSEVEQAEIATWV---AVGTAVVALAIGPLVDRLGRRVGIIFTVSGSAICS 103 LP + R S A + A+ A +G L DR GRR ++ +++G+A+ Sbjct: 28 LPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDY 87 Query: 104 ALTAIGGAWGKSPLILIRSLGGLGYAEETVNATYLSEIYAASDDPRLTKRRGFIYSLVQG 163 A+ A L + R + G+ A V Y+++I + + GF+ + Sbjct: 88 AIMATAPFL--WVLYIGRIVAGITGATGAVAGAYIADITDGDER---ARHFGFMSACFGF 142 Query: 164 GWPVGALIAAGLTAVLLPVIGWQGCFVFAAIPAIVIAILA 203 G G ++ L+ F AA + + Sbjct: 143 GMVAGPVLGG-----LMGGFSPHAPFFAAAALNGLNFLTG 177
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 27.2 bits (60), Expect = 0.022 Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%) Query: 1 MRRLLIAMMLTLLAGCAQQQQPPKDDSLYQDLGQRAG 37 M++ IA+ + L Q PKD++ Y G + G Sbjct: 1 MKKTAIAIAVALAGFATVAQAAPKDNTWY--TGAKLG 35
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 426 bits (1096), Expect = e-148 Identities = 174/478 (36%), Positives = 245/478 (51%), Gaps = 51/478 (10%) Query: 4 SVIVVDDEAPIRQAVEQWLTLSGFEVQVFARAEECLAHLPEHFPGVVLTDVRMPGMSGLE 63 +++V DD+A IR + Q L+ +G++V++ + A + +V+TDV MP + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 64 LLTRLQGADRDLPVILLTGHGDVPMAVEAMREGAYDFLEKPFSPETLISNLRRALEKRQL 123 LL R++ A DLPV++++ A++A +GAYD+L KPF LI + RAL + + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK- 123 Query: 124 VLENRRLHEQADARTRLDATLLGVSPGMQTLRRQVLELAQLPVNVIIRGETGSGKELVAR 183 R + + ++ L+G S MQ + R + L Q + ++I GE+G+GKELVAR Sbjct: 124 -----RRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVAR 178 Query: 184 CLHDFGPRAARPFVALNCAAIPEHLFEAELFGHESGAFTGAQGKRIGRLEYADGGTVFLD 243 LHD+G R PFVA+N AAIP L E+ELFGHE GAFTGAQ + GR E A+GGT+FLD Sbjct: 179 ALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLD 238 Query: 244 EIESMPMAQQVKLLRVLQDKRLERLGSNQSIDVDLRIIAATKPDLLEEARAGRFREDLAY 303 EI MPM Q +LLRVLQ +G I D+RI+AAT DL + G FREDL Y Sbjct: 239 EIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYY 298 Query: 304 RLNVAELRLPPLRERLEDIAQLFSHFARAAAERVGREAPALDAARLSLLLGHDWPGNVRE 363 RLNV LRLPPLR+R EDI L HF + A + G + D L L+ H WPGNVRE Sbjct: 299 RLNVVPLRLPPLRDRAEDIPDLVRHFVQQAE-KEGLDVKRFDQEALELMKAHPWPGNVRE 357 Query: 364 LANAAERQAL---------------------------------------GLEQALPQPDT 384 L N R +E+ + Q Sbjct: 358 LENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFA 417 Query: 385 QW-----QGHSLAARQEAFEAQCLRASLARHKGDIKAVLNELQLPRRTLNEKMQRHAL 437 + E + A+L +G+ + L L R TL +K++ + Sbjct: 418 SFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGV 475
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 88.0 bits (218), Expect = 3e-20 Identities = 29/118 (24%), Positives = 57/118 (48%), Gaps = 2/118 (1%) Query: 675 VLMVEDNQDIGTYTRPMLEQLGFQVLWVSSAAEALKELSGNPENFHVVFSDIAMPGMSGL 734 +L+ +D+ I T L + G+ V S+AA + ++ +V +D+ MP + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGD--GDLVVTDVVMPDENAF 63 Query: 735 ELYAEIEARYPWMPVVLTTGYSTEFATIAQDETQRFDLLQKPYSRDDLAAILHKAVSR 792 +L I+ P +PV++ + +T I E +D L KP+ +L I+ +A++ Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 121 bits (304), Expect = 3e-32 Identities = 80/353 (22%), Positives = 142/353 (40%), Gaps = 52/353 (14%) Query: 3 VGIDLGTTNSLVAVWRDGSSELVTNALGETLTPSVVGLDDDGQ------ILVGKAARERL 56 + IDLGT N+L+ V G +V N PSVV + D VG A++ L Sbjct: 13 LSIDLGTANTLIYVKGQG---IVLN------EPSVVAIRQDRAGSPKSVAAVGHDAKQML 63 Query: 57 QTHPEKTAALFKRYMGSAQEIRLGSATYRPEELSSLVLKSLKADVERAFGEPVTEAVISV 116 P AA+ G + + E++ +K + +F P ++ V Sbjct: 64 GRTPGNIAAIRPMKDGVIADF------FVTEKMLQHFIKQVH---SNSFMRPSPRVLVCV 114 Query: 117 PAYFSDAQRKATRIAGELAGLKVEKLINEPTAAALAYGLHQKEGETSFLVFDLGGGTFDI 176 P + +R+A R + + AG + LI EP AAA+ GL E S +V D+GGGT ++ Sbjct: 115 PVGATQVERRAIRESAQGAGAREVFLIEEPMAAAIGAGLPVSEATGS-MVVDIGGGTTEV 173 Query: 177 SILELFDGVMEVRASAGDNFLGGEDFDQVMVEHFVNLHRDEPDFPSTELIAPALRREAER 236 +++ L V + +GG+ FD+ ++ + + + AER Sbjct: 174 AVISLNGVV-----YSSSVRIGGDRFDEAIINYVRRNY---------GSLIG--EATAER 217 Query: 237 VRRALG----QDGSADFVLRHADREW----RKTITQEQMSDFYAPLLNRLRAPAERALRD 288 ++ +G D + +R + T+ ++ + L + + AL Sbjct: 218 IKHEIGSAYPGDEVREIEVRGRNLAEGVPRGFTLNSNEILEALQEPLTGIVSAVMVALEQ 277 Query: 289 ARIR-VADLDE--ILLVGGTTRMPLIRKLAASLFGRFPSIALNPDEIVAQGAA 338 +D+ E ++L GG + + +L G +A +P VA+G Sbjct: 278 CPPELASDISERGMVLTGGGALLRNLDRLLMEETGIPVVVAEDPLTCVARGGG 330
>SECA#SecA protein signature. Length = 901 Score = 30.2 bits (68), Expect = 0.025 Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 16/110 (14%) Query: 106 EQQQLAMEHGQAERFQQLVLLECLNDSARRVELIKAAFQHLRWLTVWQSIHISSY-QQHA 164 ++++ + F++ V+L+ L DS + L AA +LR Q IH+ Y Q+ Sbjct: 748 QRKEEVVGAEMMRHFEKGVMLQTL-DSLWKEHL--AAMDYLR-----QGIHLRGYAQKDP 799 Query: 165 LAEAILREAFEAFSALIESGQH--ARFIEELQTLEQQPWLTELERREHLQ 212 E RE+F F+A++ES ++ + ++Q + E+E E + Sbjct: 800 KQEYK-RESFSMFAAMLESLKYEVISTLSKVQVRMPE----EVEELEQQR 844
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 35.6 bits (82), Expect = 4e-04 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 7/82 (8%) Query: 82 IGGWLMGLYADYKGRKAALMASVLLMCFGSLIIALTPGYESIGVGAPILLVFARLLQGLS 141 IG + G +D G K L+ +++ CFGS+I + + S+ L+ AR +QG Sbjct: 64 IGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSL-------LIMARFIQGAG 116 Query: 142 VGGEYGTSATYLSEMATKERRG 163 ++ KE RG Sbjct: 117 AAAFPALVMVVVARYIPKENRG 138
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 144 bits (364), Expect = 4e-40 Identities = 104/427 (24%), Positives = 191/427 (44%), Gaps = 31/427 (7%) Query: 2 TSLNQTPPAIRSILFALMMAVLLSALDQTIVAVSMPAISAQFRDI-DLLAWVISAYMVSL 60 TS +Q+ IL L + S L++ ++ VS+P I+ F WV +A+M++ Sbjct: 3 TSYSQSNLRHNQILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTF 62 Query: 61 TVAVPIYGKLGDLYGRRKLMLFGLGIFTLASLFCGLAQSM-EQLVLARVLQGIGAGGMVS 119 ++ +YGKL D G ++L+LFG+ I S+ + S L++AR +QG GA + Sbjct: 63 SIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPA 122 Query: 120 VSQAIIADIVPPRERGRYQGYFSSMYAVASVAGPVLGGLMTEYLSWRWVFLINLPLGAAA 179 + ++A +P RG+ G S+ A+ GP +GG++ Y+ W +L+ +P+ Sbjct: 123 LVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWS--YLLLIPM---I 177 Query: 180 LIVAYRTLVGLPVPQ--RKPIIDYLGTVLMIIGLTALLLGITEIGQGHGLGDAEVQLLLG 237 I+ L+ L + K D G +LM +G+ +L T L Sbjct: 178 TIITVPFLMKLLKKEVRIKGHFDIKGIILMSVGIVFFMLFTTSYSISF----------LI 227 Query: 238 TALLTLAIFVWYERRTAEPLLPMHLFTNK---SAVLCWCTVFFTSFQAISLIVLMPLRYQ 294 ++L+ IFV + R+ +P + L N VLC +F T + ++P + Sbjct: 228 VSVLSFLIFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGT---VAGFVSMVPYMMK 284 Query: 295 TVTG-GGADSAALHLLPLAIGMPMGAYFAGRRTAHTGRYKPLILTGALLMPVAILGMAFT 353 V A+ ++ + P + + + Y G G L + G + V+ L +F Sbjct: 285 DVHQLSTAEIGSVIIFPGTMSVIIFGYIGGILVDRRGPLYVLNI-GVTFLSVSFLTASFL 343 Query: 354 PPQSLIVMSLFMVLTGVATGMQFPTSLVGT--QNSVQPRDMGVATSTTNLFRSLGGAVGV 411 + M++ +V V G+ F +++ T +S++ ++ G S N L G+ Sbjct: 344 LETTSWFMTIIIVF--VLGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGI 401 Query: 412 ALMSALL 418 A++ LL Sbjct: 402 AIVGGLL 408
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 152 bits (384), Expect = 2e-48 Identities = 81/208 (38%), Positives = 124/208 (59%) Query: 1 MVRRTKEEAQITRSQILEAAEQAFYERGVARTTLADIATLAGVTRGAIYWHFNNKADLVQ 60 M R+TK+EAQ TR IL+ A + F ++GV+ T+L +IA AGVTRGAIYWHF +K+DL Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60 Query: 61 AMLDSLQEPLDEMAQASQSEEEEDPLGCMRNLLIHLFHELALDPKTRRINEILFHKCEFT 120 + + + + E+ Q++ DPL +R +LIH+ + + R + EI+FHKCEF Sbjct: 61 EIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFV 120 Query: 121 DEMCDFRRQRQDNAIQCHDRITLGLNNAVRQGQLPKRLDTARAAVALFAYVNGIIYQWLL 180 EM ++ +++ ++ +DRI L + + LP L T RAA+ + Y++G++ WL Sbjct: 121 GEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLF 180 Query: 181 VPDSFSLPAEAEQLVDVCLDMLRFSPTL 208 P SF L EA V + L+M PTL Sbjct: 181 APQSFDLKKEARDYVAILLEMYLLCPTL 208
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 42.1 bits (99), Expect = 2e-06 Identities = 32/135 (23%), Positives = 50/135 (37%), Gaps = 26/135 (19%) Query: 55 PGRTTAF-RVAEVRPQVNGIILKRLFTEGGDVKAGQQLYQIDPAVYEANANSAKATLQSA 113 G+ T R E++P N I+ + + EG V+ G L ++ EA+ +++L A Sbjct: 87 NGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQA 146 Query: 114 KSMSDRYK----------------------QLVSEQAVSRQEYDTALASTQEAQAALQTA 151 + RY+ Q VSE+ V R T+L Q + Q Sbjct: 147 RLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRL---TSLIKEQFSTWQNQKY 203 Query: 152 QINLRYTKVLAPISG 166 Q L K A Sbjct: 204 QKELNLDKKRAERLT 218
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1293 bits (3347), Expect = 0.0 Identities = 665/1034 (64%), Positives = 825/1034 (79%), Gaps = 4/1034 (0%) Query: 1 MSKFFIDRPIFAWVIALVIMLVGALSISSLPINQYPSIAPPAIGIQVTYPGASAQTVQDT 60 M+ FFI RPIFAWV+A+++M+ GAL+I LP+ QYP+IAPPA+ + YPGA AQTVQDT Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFNQGTNPDTAQVQVQNKLNLATPLLPQ 120 V QVIEQ +NGIDNL Y+SS S+S GS+TIT TF GT+PD AQVQVQNKL LATPLLPQ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 121 EVQQQGIRVTKAVKNFLMVIGLVSEDGSMGKEDLANYIVSNMQDPISRTSGVGDFQVFGS 180 EVQQQGI V K+ ++LMV G VS++ ++D+++Y+ SN++D +SR +GVGD Q+FG+ Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 181 QYAMRIWLDPAKLNNFQLTPVDVKDAITAQNVQVSSGQLGGLPSISGQQLNATIIGKTRL 240 QYAMRIWLD LN ++LTPVDV + + QN Q+++GQLGG P++ GQQLNA+II +TR Sbjct: 181 QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240 Query: 241 QTAEQFGNIFLKVNTDGSQVRLKDVATVGLGAENYSTDSQFDGKPASGLAIKLATGANAL 300 + E+FG + L+VN+DGS VRLKDVA V LG ENY+ ++ +GKPA+GL IKLATGANAL Sbjct: 241 KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300 Query: 301 DTAKAIRATVSSLEPFFPPGMKVVYPYDTTPVVSESINGVVHTLIEAIVLVFLVMYLFLQ 360 DTAKAI+A ++ L+PFFP GMKV+YPYDTTP V SI+ VV TL EAI+LVFLVMYLFLQ Sbjct: 301 DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360 Query: 361 NFRATIITTMTVPVVLLGTFGILAAFGFTINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 N RAT+I T+ VPVVLLGTF ILAAFG++INTLTMFGMVLAIGLLVDDAIVVVENVERVM Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 Query: 421 EEEKLSPRDATIKSMTQIQGALVGIALVLSAVLLPMAFFGGSTGVIYKQFSITIVSAMAL 480 E+KL P++AT KSM+QIQGALVGIA+VLSAV +PMAFFGGSTG IY+QFSITIVSAMAL Sbjct: 421 MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480 Query: 481 SVVVALIFTPALCATMLKPIDHEKHGQPKRGFFGWFNRTFDRSVLSYERGVGNMLKHKWP 540 SV+VALI TPALCAT+LKP+ +H + K GFFGWFN TFD SV Y VG +L Sbjct: 481 SVLVALILTPALCATLLKPV-SAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539 Query: 541 AYLGYILICAGMVFMFMRIPAAFLPEEDQGVIFAQIQTPAGSSTERTQEVIDQMREYLLT 600 L Y LI AGMV +F+R+P++FLPEEDQGV IQ PAG++ ERTQ+V+DQ+ +Y L Sbjct: 540 YLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLK 599 Query: 601 KESGAVKSVFSVNGFNFAGRGQSSAIAFVMLKPWEERDS-NNSVFELAKRAQGYFFSLRD 659 E V+SVF+VNGF+F+G+ Q++ +AFV LKPWEER+ NS + RA+ +RD Sbjct: 600 NEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRD 659 Query: 660 AMVFAVVPPSVLELGNATGFDVYLQDQGGVGHDKLMEARNQFLGMAAQSKI-LAGVRPNG 718 V P+++ELG ATGFD L DQ G+GHD L +ARNQ LGMAAQ L VRPNG Sbjct: 660 GFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNG 719 Query: 719 LNDEPQYQLIIDDERASALGITLSDINNTLSIALGGSYVNDFIDRGRVKKVYIQGDAGAR 778 L D Q++L +D E+A ALG++LSDIN T+S ALGG+YVNDFIDRGRVKK+Y+Q DA R Sbjct: 720 LEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFR 779 Query: 779 MTPEDLKKWYVRNSAGEMVPFSAFASGKWSYGSPKLSRYNGVAAEEVLGTPAPGYSSGDA 838 M PED+ K YVR++ GEMVPFSAF + W YGSP+L RYNG+ + E+ G APG SSGDA Sbjct: 780 MLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDA 839 Query: 839 MNEVEALAKKLPQGIGISWTGLSYEERLSGSQAPALYALSLLVVFLCLAALYESWSIPIA 898 M +E LA KLP GIG WTG+SY+ERLSG+QAPAL A+S +VVFLCLAALYESWSIP++ Sbjct: 840 MALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVS 899 Query: 899 VILVVPLGVIGALMATSLRGLSNDVFFQVGLLVTVGLAAKNAILIVEFAKELHE-QGKSL 957 V+LVVPLG++G L+A +L NDV+F VGLL T+GL+AKNAILIVEFAK+L E +GK + Sbjct: 900 VMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGV 959 Query: 958 VDAAIEACRMRLRPIIMTSMAFILGVVPLAISSGAGSGSQHSIGTGVIGGMITAVILAIF 1017 V+A + A RMRLRPI+MTS+AFILGV+PLAIS+GAGSG+Q+++G GV+GGM++A +LAIF Sbjct: 960 VEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIF 1019 Query: 1018 WVPLFFVTVSGLFK 1031 +VP+FFV + FK Sbjct: 1020 FVPVFFVVIRRCFK 1033
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 36.0 bits (83), Expect = 2e-04 Identities = 70/390 (17%), Positives = 138/390 (35%), Gaps = 56/390 (14%) Query: 76 IGGWLFGRVADKHGRKNSMLISVTMMCAGSLIIACLPTYASIGAWAPALLLMARLLQGLS 135 IG ++G+++D+ G K +L + + C GS+I ++ S+ L+MAR +QG Sbjct: 64 IGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSL-------LIMARFIQGAG 116 Query: 136 VGG----EYGTTATYMSEVALRGQRGFYASFQYVT-----LIGGQLL------------- 173 A Y+ + G S + IGG + Sbjct: 117 AAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPM 176 Query: 174 -AVLTVVILQQFLTTEELRDYGWRIPFVIGAGAAVIALLLRRTLNETT------------ 220 ++TV L + L E + I +I ++ +L T + Sbjct: 177 ITIITVPFLMKLLKKEVRIKGHFDIKGIILMSVGIVFFMLFTTSYSISFLIVSVLSFLIF 236 Query: 221 TAESRQDKDAGSIAALFKHHAAAFITVLGYTAGGSLI-FYTFTTYMQKYLVNTGGMEAKT 279 R+ D L K+ + G G++ F + YM K + A+ Sbjct: 237 VKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDV--HQLSTAEI 294 Query: 280 ASYIMTGALFLYMCMQPFFGMLADRIGRRNSMLLFGALGTLCTVPILMTLKTTTNPFIAF 339 S I+ + G+L DR G + + ++ + L+TT+ F+ Sbjct: 295 GSVIIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSW-FMTI 353 Query: 340 VLITLALAIVSFYTSISGLVKAEMFPPQVRALGVGL-------AYAVANAVFGG--SAEW 390 +++ + + T IS +V + + + G+ L + A+ GG S Sbjct: 354 IIVFVLGGLSFTKTVISTIVSSSLKQQEA-GAGMSLLNFTSFLSEGTGIAIVGGLLSIPL 412 Query: 391 VALKLKSAGMENSFYWYVTAMMAVAFLFSL 420 + +L ++ S Y Y ++ + + + Sbjct: 413 LDQRLLPMEVDQSTYLYSNLLLLFSGIIVI 442
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 53.3 bits (128), Expect = 7e-10 Identities = 36/155 (23%), Positives = 69/155 (44%), Gaps = 2/155 (1%) Query: 26 LPDVAADLGVSIPGAGWLVTGYALGVAVGAPFMAMATAKLPRKAALVTLMGIFIIGNLLC 85 LPD+A D W+ T + L ++G + +L K L+ + I G+++ Sbjct: 37 LPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIG 96 Query: 86 ALA-SDYNVLMFARVVTALCHGAFFGIGSVVAAGLVPANRRASAVALMFTGLTLANVLGV 144 + S +++L+ AR + AF + VV A +P R A L+ + + + +G Sbjct: 97 FVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGP 156 Query: 145 PLGTALGQYAGWRSTFWAVTVIGVIALIGLIRFLP 179 +G + Y W S + +I +I + L++ L Sbjct: 157 AIGGMIAHYIHW-SYLLLIPMITIITVPFLMKLLK 190 Score = 29.8 bits (67), Expect = 0.018 Identities = 39/201 (19%), Positives = 71/201 (35%), Gaps = 16/201 (7%) Query: 196 LRGAGIWLSLTMTALFSASMFTLFTYIAPLLGEVTGVSPNGVTWTLLLIGLGLTAGNVIG 255 LR I + L + + FS + P + P W L + G + Sbjct: 10 LRHNQILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVY 69 Query: 256 GKMADRRLSSTLIGVFVSMAVISTILSWTSAALIPTEITLFLWAVAAFAAVPALQINVVT 315 GK++D+ L+ + + +++ + + I A AA PAL + VV Sbjct: 70 GKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVV- 128 Query: 316 FGKAAPNLVSTLNIGAFNV-------GNALGAWVGGSVIAHGLG---LTSVPLAAAVLAV 365 A + AF + G +G +GG +IAH + L +P+ + Sbjct: 129 ----ARYIPKENRGKAFGLIGSIVAMGEGVGPAIGG-MIAHYIHWSYLLLIPMITIITVP 183 Query: 366 LALLITLITFRQTGNPDLAHA 386 + + R G+ D+ Sbjct: 184 FLMKLLKKEVRIKGHFDIKGI 204
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 31.1 bits (70), Expect = 0.003 Identities = 19/88 (21%), Positives = 29/88 (32%), Gaps = 2/88 (2%) Query: 45 PPVKAKDPVKPPVKKTDPVKPPVKPPVKTTDPVKPPVKPPVKTTNPVEPPVKPPVKTTDP 104 P +A P PV + +P P+ P + KP K +P K + Sbjct: 56 EPPQAVQPPPEPVVEPEPEPEPI--PEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRD 113 Query: 105 VKPPVKPQVKPSTSEPVAQTVPPVPAAS 132 VKP P + A+ A+ Sbjct: 114 VKPVESRPASPFENTAPARLTSSTATAA 141 Score = 30.7 bits (69), Expect = 0.004 Identities = 19/96 (19%), Positives = 34/96 (35%) Query: 34 PVSIKPKVNVKPPVKAKDPVKPPVKKTDPVKPPVKPPVKTTDPVKPPVKPPVKTTNPVEP 93 V P+ V+P + + +PP + ++ P P PVK + P + PVE Sbjct: 60 AVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVES 119 Query: 94 PVKPPVKTTDPVKPPVKPQVKPSTSEPVAQTVPPVP 129 P + T P + ++ + P Sbjct: 120 RPASPFENTAPARLTSSTATAATSKPVTSVASGPRA 155 Score = 30.3 bits (68), Expect = 0.006 Identities = 19/87 (21%), Positives = 28/87 (32%) Query: 62 PVKPPVKPPVKTTDPVKPPVKPPVKTTNPVEPPVKPPVKTTDPVKPPVKPQVKPSTSEPV 121 P + PP +P P P KP K KP K Q +P Sbjct: 57 PPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKP 116 Query: 122 AQTVPPVPAASSRLDKLLAVVNTATGV 148 ++ P P ++ +L + TA Sbjct: 117 VESRPASPFENTAPARLTSSTATAATS 143
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 28.6 bits (64), Expect = 0.032 Identities = 42/243 (17%), Positives = 84/243 (34%), Gaps = 26/243 (10%) Query: 55 WALVGALFIAFCGLGWWSFQQVSLMEQQLVATQESFARISEEAAGRLQDI---------S 105 + ++G L IAF + V+ +L + S I +++I Sbjct: 62 YFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRS-KEIKPIENSIVKEIIVKEGESVRK 120 Query: 106 GKVVAT-ESLSSDGEALKQRIKLLEAQLEDQDKQ-----REGVEGQQGSLDKRLEQMAAQ 159 G V+ +L ++ + LK + LL+A+LE Q E + + L Sbjct: 121 GDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVS 180 Query: 160 TAQQQTENAQMQEQLKSVVAELAALKTALPDLKTAQAEQGKLDAQIKSVAADVAALKKQG 219 + + ++EQ + + + L +AE+ + A+I K + Sbjct: 181 EEEVLRLTSLIKEQFSTWQNQKYQKELNL---DKKRAERLTVLARINRYENLSRVEKSRL 237 Query: 220 NPSAAVERLEQELMVLKS---EQENTPAPSAGGNTAEFDAFRAQVTRSINTLNSQIQNLS 276 + L + + K EQEN A + + Q+ I + + Q ++ Sbjct: 238 D---DFSSLLHKQAIAKHAVLEQENKYV-EAVNELRVYKSQLEQIESEILSAKEEYQLVT 293 Query: 277 QQL 279 Q Sbjct: 294 QLF 296
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 116 bits (292), Expect = 4e-32 Identities = 83/367 (22%), Positives = 134/367 (36%), Gaps = 70/367 (19%) Query: 1 MKILVTGASGFIGGRFARFALEQGMSVR----IN-----GRRADAVEHLVRRGAEFIQGD 51 MK LVTGA+GFIG ++ LE G V +N + +E L + G +F + D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 52 LADPYLVRALCDD--VEAVVHCAGSVGM---WGRRQDFVQGNVQLTENIVEGCLKQRVRR 106 LAD + L E V + + + N+ NI+EGC +++ Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 107 LVHLSSPSIYFNGHSRRD-ITEDQVPRRFHNHYAATKYLAEQKVFGAEE-FGLEVIALRP 164 L++ SS S+Y G +R+ + D + YAATK E +GL L Sbjct: 121 LLYASSSSVY--GLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGL-- 176 Query: 165 RFVT-----GAGDNSIFPRLLHMQRKKRLSIVGNGLNMVDFTSMQNLNEALLSSL----- 214 RF T G D ++F M K + + G DFT + ++ EA++ Sbjct: 177 RFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPH 236 Query: 215 -----------LATGSALGKAYNISNGTPVPLWDAINYVMRQMQLPQVTRYRSYGLAYSA 263 A A + YNI N +PV L D I + + + Sbjct: 237 ADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLP------- 289 Query: 264 AAINEAACMLWPGRPEPTLSRLGMQVMNKDFTLDIGRARHYLDYQPQVSLWTALDEFCGW 323 L PG T + D + + P+ ++ + F W Sbjct: 290 ---------LQPGDVLETSA-------------DTKALYEVIGFTPETTVKDGVKNFVNW 327 Query: 324 WQAQHPI 330 ++ + + Sbjct: 328 YRDFYKV 334
>PF05272#Virulence-associated E family protein Length = 892 Score = 32.4 bits (73), Expect = 0.002 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 20/103 (19%) Query: 14 SHILRGLSFDVKVGEVTCLLGRNGVGKTTLLRVLMGLLPSKEGSVQWEGKTITQLKTHQR 73 H+ R + K L G G+GK+TL+ L+GL + T + T + Sbjct: 583 GHVARVMEPGCKFDYSVVLEGTGGIGKSTLINTLVGL--------DFFSDTHFDIGTGKD 634 Query: 74 VHAGIAYVPQGREIFGRLTVEENLLMGLSRFPGAEAKEVPAFI 116 + IA G + E L ++ F A+A+ V AF Sbjct: 635 SYEQIA---------GIVAYE---LSEMTAFRRADAEAVKAFF 665
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 37.2 bits (86), Expect = 1e-05 Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 1/63 (1%) Query: 81 RHTVEHSVYVRADQRGKGLGPRLMAALIERARDCDKHMMVAAIESGNAASIALHDRLGFK 140 +E + V D R KG+G L+ IE A++ ++ + N ++ + + F Sbjct: 89 YALIED-IAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFI 147 Query: 141 ITG 143 I Sbjct: 148 IGA 150
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 26.8 bits (59), Expect = 0.037 Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 2/43 (4%) Query: 90 RAEVQKLMVLPQARGRGLGRQLMEEVEQTAVKHKRGLLHLDTE 132 A ++ + V R +G+G L+ + + A + L E Sbjct: 89 YALIEDIAVAKDYRKKGVGTALLHKAIEWA--KENHFCGLMLE 129
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 1120 bits (2900), Expect = 0.0 Identities = 427/567 (75%), Positives = 488/567 (86%), Gaps = 2/567 (0%) Query: 2 KISRQAYADMFGPTVGDKVRLADTELWIEVEKDFTTYGEEVKFGGGKVIRDGMGQGQLL- 60 ++SR AYA+MFGPTVGDKVRLADTEL+IEVEKDFTT+GEEVKFGGGKVIRDGMGQ Q+ Sbjct: 4 RMSRAAYANMFGPTVGDKVRLADTELFIEVEKDFTTHGEEVKFGGGKVIRDGMGQSQVTR 63 Query: 61 AAEVVDTLITNALIIDHWGIVKADVGIKNGRIAAIGKAGNPDIQPDVTIAVGAATEVIAG 120 VDT+ITNALI+DHWGIVKAD+G+K+GRIAAIGKAGNPD+QP VTI VG TEVIAG Sbjct: 64 EGGAVDTVITNALILDHWGIVKADIGLKDGRIAAIGKAGNPDMQPGVTIIVGPGTEVIAG 123 Query: 121 EGMILTAGGVDTHIHFICPQQIEEALMSGVTTMIGGGTGPATGTNATTVTPGPWHMARML 180 EG I+TAGG+D+HIHFICPQQIEEALMSG+T M+GGGTGPA GT ATT TPGPWH+ARM+ Sbjct: 124 EGKIVTAGGMDSHIHFICPQQIEEALMSGLTCMLGGGTGPAHGTLATTCTPGPWHIARMI 183 Query: 181 QASDSFPMNIGFTGKGNVSLPGPLIEQVKAGAIGLKLHEDWGTTPAAIDNCLSVADEYDV 240 +A+D+FPMN+ F GKGN SLPG L+E V GA LKLHEDWGTTPAAID CLSVADEYDV Sbjct: 184 EAADAFPMNLAFAGKGNASLPGALVEMVLGGATSLKLHEDWGTTPAAIDCCLSVADEYDV 243 Query: 241 QVAIHTDTLNESGFVETTLAAFKNRTIHTYHTEGAGGGHAPDIIKACGSPNVLPSSTNPT 300 QV IHTDTLNESGFVE T+AA K RTIH YHTEGAGGGHAPDII+ CG PNV+PSSTNPT Sbjct: 244 QVMIHTDTLNESGFVEDTIAAIKGRTIHAYHTEGAGGGHAPDIIRICGQPNVIPSSTNPT 303 Query: 301 RPFTRNTIDEHLDMLMVCHHLDPSIAEDVAFAESRIRRETIAAEDILHDLGAFSMLSSDS 360 RP+T NT+ EHLDMLMVCHHL P+I ED+AFAESRIR+ETIAAEDILHD+GAFS++SSDS Sbjct: 304 RPYTVNTLAEHLDMLMVCHHLSPTIPEDIAFAESRIRKETIAAEDILHDIGAFSIISSDS 363 Query: 361 QAMGRVGEVIMRTWQTADKMKKQRGPLPQDGPGNDNFRAKRYIAKYTINPAITHGISHEV 420 QAMGRVGEV +RTWQTADKMK+QRG L ++ NDNFR KRYIAKYTINPAI HG+SHE+ Sbjct: 364 QAMGRVGEVAIRTWQTADKMKRQRGRLKEETGDNDNFRVKRYIAKYTINPAIAHGLSHEI 423 Query: 421 GSIEVGKWADLVLWRPAFFGVKPTLILKGGAIAASLMGDANASIPTPQPVHYRPMFASFG 480 GS+EVGK ADLVLW PAFFGVKP ++L GG IAA+ MGD NASIPTPQPVHYRPMF ++G Sbjct: 424 GSLEVGKRADLVLWNPAFFGVKPDMVLLGGTIAAAPMGDPNASIPTPQPVHYRPMFGAYG 483 Query: 481 SSLHATSLTFISQAAFDAGVPESLGLKKQIGVVKGCR-TVQKKDLIHNDYLPDIEVDPQT 539 S +S+TF+SQA+ DAG+ LG+ K++ V+ R + K +IHN P IEVDP+T Sbjct: 484 RSRTNSSVTFVSQASLDAGLAGRLGVAKELVAVQNTRGGIGKASMIHNSLTPHIEVDPET 543 Query: 540 YQVKADGVLLWCEPADVLPMAQRYFLF 566 Y+V+ADG LL CEPA VLPMAQRYFLF Sbjct: 544 YEVRADGELLTCEPATVLPMAQRYFLF 570
>PF06580#Sensor histidine kinase Length = 349 Score = 31.0 bits (70), Expect = 0.008 Identities = 25/112 (22%), Positives = 40/112 (35%), Gaps = 29/112 (25%) Query: 270 MLQNLIGNALQHGAASHE----ITVTVTGAEKAVILVVHNEGKPIAEDAIGTIFDPLVRS 325 ++Q L+ N ++HG A I + T V L V N G ++ Sbjct: 259 LVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKN------------ 306 Query: 326 TEENSETRGTSTSLGLGLFIVKEVVNAHGG---SITVTSTIGEGTTFNVVLP 374 T S G GL V+E + G I ++ G+ V++P Sbjct: 307 ---------TKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAM-VLIP 348
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 50.9 bits (122), Expect = 3e-09 Identities = 50/221 (22%), Positives = 94/221 (42%), Gaps = 43/221 (19%) Query: 11 GIDFGTSNSTVGWQRPGMESLIALEDDKITL--PSVVFFNMEERRPVYGRLALHEYLEGY 68 ID GT+N+ LI ++ I L PSVV + A+ G+ Sbjct: 14 SIDLGTANT-----------LIYVKGQGIVLNEPSVVAIRQDRAGSPKSVAAV-----GH 57 Query: 69 EGRLM--RSLKSLLGSKLIKHDTSVLGTAMPFKDLLALFIGELKKRAEQTAGREFEQVVL 126 + + M R+ ++ + +K V+ + +L FI ++ + R +V++ Sbjct: 58 DAKQMLGRTPGNIAAIRPMKD--GVIADFFVTEKMLQHFIKQVHSNS---FMRPSPRVLV 112 Query: 127 GRPVHFVDDDAQADQEAEDTLAEVARKIGFKDVSFQFEPIAAAFDYESTIQDEELVLIVD 186 PV + +A +E+ A+ G ++V EP+AAA + + ++VD Sbjct: 113 CVPVGATQVERRAIRES-------AQGAGAREVFLIEEPMAAAIGAGLPVSEATGSMVVD 165 Query: 187 IGGGTSDFSLVRLSPERRQHDDRQQDILATGGVHIGGTDFD 227 IGGGT++ +++ L+ ++ + V IGG FD Sbjct: 166 IGGGTTEVAVISLN-----------GVVYSSSVRIGGDRFD 195
>PF05272#Virulence-associated E family protein Length = 892 Score = 32.7 bits (74), Expect = 0.002 Identities = 15/87 (17%), Positives = 26/87 (29%), Gaps = 20/87 (22%) Query: 44 LTLLGPSGSGKTTSLMMLAGFETPTAGEILLGGRAINNVPPHKRDIGMVFQNYALFPHMT 103 + L G G GK+T + L G + + +G +D Sbjct: 599 VVLEGTGGIGKSTLINTLVGLDFFSDTHFDIG---------TGKDSYEQIAGIVA---YE 646 Query: 104 VAENLAFPLSVRGMSKTDVGEKVKKAL 130 ++E + + D E VK Sbjct: 647 LSE-------MTAFRRADA-EAVKAFF 665
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 61.4 bits (149), Expect = 2e-13 Identities = 33/116 (28%), Positives = 50/116 (43%), Gaps = 2/116 (1%) Query: 2 IRVLVAEDHTIVREGIKQLIGLARDLQVVGEASNGEQLLETLRHVACEVVLLDISMPGVN 61 +LVA+D +R + Q + A V SN L + ++V+ D+ MP N Sbjct: 4 ATILVADDDAAIRTVLNQALSRA-GYDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 62 GLEAIPRILALTNPPAILVLSMHNEAQMAARALKVGAAGYATKDSDPALLLTAIRR 117 + +PRI +LV+S N A +A + GA Y K D L+ I R Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117
>PF06580#Sensor histidine kinase Length = 349 Score = 41.0 bits (96), Expect = 1e-05 Identities = 29/132 (21%), Positives = 58/132 (43%), Gaps = 16/132 (12%) Query: 537 IASAIEWQARRFEARTQIPCLVQVPDNLPALSDARATGMFRILQEALTNVMRHARAH--- 593 + S ++ + +FE R Q Q+ PA+ D + M ++Q + N ++H A Sbjct: 225 VDSYLQLASIQFEDRLQFE--NQIN---PAIMDVQVPPM--LVQTLVENGIKHGIAQLPQ 277 Query: 594 --TVEISLTLQDGMMCMSIADDGQGFVIESGRAVSFGLVGMRERVLMLGG---RLELDSE 648 + + T +G + + + + G + + + GL +RER+ ML G +++L + Sbjct: 278 GGKILLKGTKDNGTVTLEVENTGSLALKNTKESTGTGLQNVRERLQMLYGTEAQIKLSEK 337 Query: 649 VGEGTTLRAYIP 660 G IP Sbjct: 338 QG-KVNAMVLIP 348
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 32.7 bits (74), Expect = 0.002 Identities = 38/205 (18%), Positives = 59/205 (28%), Gaps = 25/205 (12%) Query: 21 ALPALAADPAPAPAKDAA-AEAPVERAPLLSRSQE-------DAIALERQLPRE------ 66 A A P PAPA + E E + S++ E + A R++ +E Sbjct: 1018 ARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVK 1077 Query: 67 --------DQQQLQAGDDSFLALWKPANTEAPEGAVIIVPGDAESPDWPDAVGPLRRKFP 118 Q + + + A E E A + E P V P + + Sbjct: 1078 ANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSE 1137 Query: 119 DVGWSSLSITLPDPLDNTPGAREPDAAPAD-ANTAKATDAPKEPP--KDATATAKDPAAE 175 V + DP N + AD AK T + E P + T + E Sbjct: 1138 TVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVE 1197 Query: 176 AEALAAAETAKAAADEALDKAQAER 200 T + + R Sbjct: 1198 NPENTTPATTQPTVNSESSNKPKNR 1222
>PF06580#Sensor histidine kinase Length = 349 Score = 39.1 bits (91), Expect = 3e-05 Identities = 23/103 (22%), Positives = 35/103 (33%), Gaps = 25/103 (24%) Query: 363 LLSNAIRHGLS----GSVITVTLATHEDEVLLAVRNAGDGIDAEHLPRLFDRFYRVHVSR 418 L+ N I+HG++ G I + V L V N G Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKN---------------- 306 Query: 419 ARQQGGTGLGLAIVRSIMSL---HEGQVTVRSEPGQFTTFSLI 458 + TG GL VR + + E Q+ + + G+ LI Sbjct: 307 --TKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLI 347
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 83.0 bits (205), Expect = 1e-20 Identities = 31/119 (26%), Positives = 61/119 (51%), Gaps = 1/119 (0%) Query: 2 RILVVEDEPKTAEYMHQGLTESGYVVDIANTGLDGLYLAQHQAYDVVILDVNLPEMDGWE 61 ILV +D+ ++Q L+ +GY V I + D+V+ DV +P+ + ++ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 VLSRLRKT-VNTRIMMVTARGRLEEKVKGLEMGADDYLVKPFEFPELLARVRTLMRRSE 119 +L R++K + +++++A+ +K E GA DYL KPF+ EL+ + + + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 41.0 bits (96), Expect = 8e-06 Identities = 52/313 (16%), Positives = 103/313 (32%), Gaps = 35/313 (11%) Query: 59 EQGHGNEAKKPDAAASESSHEEEEEGHIELTAEQIKAAGIELTSAE---PRQMSTTVTFP 115 E E K PD ++ EEE L EQ + E ++ + +T Sbjct: 161 ELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVL 220 Query: 116 GEIRFDEDRTAHVVPRVSGVVEAVKVDLG--QAVKKGQVLAVIASQQISDQRSELNAAQR 173 I E+ + R+ + AV + + V A ++ +S+L + Sbjct: 221 ARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIES 280 Query: 174 RQELARLTLQREKKLWEDRISAEQDYLQARQDFQEADINLANARQKISAIGASTHPSAGS 233 A+ Q +L+++ I Q + + LA ++ Sbjct: 281 EILSAKEEYQLVTQLFKNEIL--DKLRQTTDNIGLLTLELAKNEERQQ------------ 326 Query: 234 RYELIAPFDAVVVE-KHLGIGEMVSEASNAFTLS-DLSRVWATFGVAPRDLDKVVVGRPV 291 + AP V + K G +V+ A + + + T V +D+ + VG+ Sbjct: 327 ASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNA 386 Query: 292 IISAPDLN----ARVEGRVGYVG--SLLGEQTRAAA-VRVTL-------ANPQGAWRPGL 337 II + G+V + ++ ++ V +++ N G+ Sbjct: 387 IIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVIISIEENCLSTGNKNIPLSSGM 446 Query: 338 FVSVEVAAEQSSV 350 V+ E+ SV Sbjct: 447 AVTAEIKTGMRSV 459 Score = 39.0 bits (91), Expect = 3e-05 Identities = 21/115 (18%), Positives = 42/115 (36%), Gaps = 13/115 (11%) Query: 112 VTFPGEIRFDEDRTAHVVPRVSGVVEAVKVDLGQAVKKGQVLAVIASQQISDQRSELNAA 171 T G++ + P + +V+ + V G++V+KG VL + + ++ Sbjct: 84 ATANGKLTHSGRSKE-IKPIENSIVKEIIVKEGESVRKGDVLLKLTALG---AEADTLKT 139 Query: 172 QRRQELARLTLQR---------EKKLWEDRISAEQDYLQARQDFQEADINLANAR 217 Q ARL R KL E ++ E + ++ +L + Sbjct: 140 QSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQ 194
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 801 bits (2070), Expect = 0.0 Identities = 235/1066 (22%), Positives = 438/1066 (41%), Gaps = 61/1066 (5%) Query: 5 LIQFAIEQRIVVMLAVLLMAGLGIASYQKLPIDAVPDITNVQVQINTSAPGFSPLETEQR 64 + F I + I + +++ G + +LP+ P I V ++ + PG + Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 65 ITFAIETNMAGLPGLQQTRSLSRS-GLSQVTVIFEDGTDLFFARQLVNERLQIAKDQLPE 123 +T IE NM G+ L S S S G +T+ F+ GTD A+ V +LQ+A LP+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 124 GVDTMMGPISTGLGEIFLWTVEAREGALKEDGTPYTPTDLRVIQDWIIKPQLRNVPGVAE 183 V + +L D T D+ +K L + GV + Sbjct: 121 EVQQQGISVEKSSS-SYLMVA-----GFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGD 174 Query: 184 INTIGGFARQYQIAPDPKKLAAYKLTLNDLVAALERNNANVGAGYIERGGE------QLL 237 + G +I D L YKLT D++ L+ N + AG + Sbjct: 175 VQLFGA-QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNAS 233 Query: 238 IRAPGQLGTVDDIANIVI-ANVQGTPIRISSVAEVGIGKEMRSGAATENGREVVLGTVFM 296 I A + ++ + + N G+ +R+ VA V +G E + A NG+ + + Sbjct: 234 IIAQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKL 293 Query: 297 LIGENSRTVSQAVAAKLAEINRTLPQGVEAVTVYDRTTLVEKAIATVKKNLIEGAILVIV 356 G N+ ++A+ AKLAE+ PQG++ + YD T V+ +I V K L E +LV + Sbjct: 294 ATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFL 353 Query: 357 ILFLFLGNIRAALITAMVIPLAMLFTFTGMFTNKVSANLMSLG--ALDFGIIVDGAVVIV 414 +++LFL N+RA LI + +P+ +L TF + S N +++ L G++VD A+V+V Sbjct: 354 VMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVV 413 Query: 415 ENAIRRLAHAQQKHGRMLTRSERFHEVFAAAREARRPLIFGQLIIMVVYLPIFALTGVEG 474 EN R + + + + + L+ +++ V++P+ G G Sbjct: 414 ENVERVMMEDK---------LPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTG 464 Query: 475 KMFHPMAFTVVIALLGAMILSVTFVPAAIAMFVTGKVKEEE----GFVMRTAR------Q 524 ++ + T+V A+ ++++++ PA A + E GF Sbjct: 465 AIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVN 524 Query: 525 RYAPILSWVLGHRSIAFGMAFVLIVLSGFTASRMGSEFIPSLSEGDFALQALRVPGTSL- 583 Y + +LG + +++ R+ S F+P +G F G + Sbjct: 525 HYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQE 584 Query: 584 -TQSVDMQQRLEKAIIEKVPEVQRVFARTGTAEIAADPMPPNISDSYVMLKPQSEWPDPD 642 TQ V + Q + + + V+ VF G + N ++V LKP E + Sbjct: 585 RTQKV-LDQVTDYYLKNEKANVESVFTVNG---FSFSGQAQNAGMAFVSLKPWEERNGDE 640 Query: 643 KSRETLIADLQKAAASVPGSNYELSQPIQLRFNELVSGVRSDVA-VKVFGDDMNVLNQTA 701 S E +I + + EL + D + G + L Q Sbjct: 641 NSAEAVIHRAKMELGKIRDGFVIPFNM--PAIVELGTATGFDFELIDQAGLGHDALTQAR 698 Query: 702 AKIAATLQKVPGA-SEVKVEQTTGLPVLTINIDRDKAARYGLNVADVQDAIAIALGGRQA 760 ++ + P + V+ + +D++KA G++++D+ I+ ALGG Sbjct: 699 NQLLGMAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYV 758 Query: 761 GTLYEGDRRFDMVVRLSEQLRTDVDGLSSLLIPVPAVTGSSAGNQQISFIALSQVASLDL 820 + R + V+ + R + + L V + G + S + Sbjct: 759 NDFIDRGRVKKLYVQADAKFRMLPEDVDKL--YVRSANG--------EMVPFSAFTTSHW 808 Query: 821 VLGPNQISRENGKRVVIVSANVRGRDLGSFVEEAGTTIDN-GVQIPAGYWTSWGGQFEQL 879 V G ++ R NG + + G+ +A ++N ++PAG W G Q Sbjct: 809 VYGSPRLERYNGLPSMEIQGEAAP---GTSSGDAMALMENLASKLPAGIGYDWTGMSYQE 865 Query: 880 QSAAKRLQIVVPVALLLVLALLFMMFNNLKDGLLVFTGIPFALTGGVMALWLRDIPLSIS 939 + + + +V ++ ++V L ++ + + V +P + G ++A L + + Sbjct: 866 RLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVY 925 Query: 940 AGVGFIALSGVAVLNGLVMIAFIRSLRE-QGHSLHDAINEGALTRLRPVLMTALVASLGF 998 VG + G++ N ++++ F + L E +G + +A RLRP+LMT+L LG Sbjct: 926 FMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGV 985 Query: 999 IPMALATGTGAEVQRPLATVVIGGILSSTALTLLVLPALYQWAHRR 1044 +P+A++ G G+ Q + V+GG++S+T L + +P + R Sbjct: 986 LPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFVVIRRC 1031
>BACINVASINB#Salmonella/Shigella invasin protein B signature. Length = 593 Score = 33.6 bits (76), Expect = 0.006 Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 5/75 (6%) Query: 14 TGAMAGFVLGAIVGIAAVAYVSLTVATCGFGGFLLAMAVGLAGNAIASIGESIGSAFSSP 73 T MAG ++GAIV A+ V + VA G G A L +GE+I + Sbjct: 402 TAEMAGSIVGAIVAAIAMVAVIVVVAVVGKGA-----AAKLGNALSKMMGETIKKLVPNV 456 Query: 74 AGQIESASPNVFING 88 Q+ +F G Sbjct: 457 LKQLAQNGSKLFTQG 471
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 98.0 bits (244), Expect = 9e-26 Identities = 39/123 (31%), Positives = 64/123 (52%), Gaps = 2/123 (1%) Query: 1 MAGRSILIVDDEAPIREMIAVALEMAGYDCIEAENSQQAHAIIVDRKPDLILLDWMLPGT 60 M G +IL+ DD+A IR ++ AL AGYD N+ I DL++ D ++P Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 61 SGIELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAV 120 + +L R+K + D+P+++++A+ I+ E GA DY+ KPF EL+ + Sbjct: 61 NAFDLLPRIK--KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRA 118 Query: 121 LRR 123 L Sbjct: 119 LAE 121
>PF06580#Sensor histidine kinase Length = 349 Score = 31.8 bits (72), Expect = 0.005 Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 25/99 (25%) Query: 329 LIFNAVKY----TPAEGVIRIRWWADERGAHLSVQDSGIGIETKHLPRLTERFYRVDTSR 384 L+ N +K+ P G I ++ D L V+++G + K+ Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTG-SLALKNTKE------------ 309 Query: 385 ASNTGGTGLGLAIVKHVLLRHRGN---LEINSVLGKGSV 420 TG GL V+ L G ++++ GK + Sbjct: 310 -----STGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNA 343
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 86.8 bits (215), Expect = 2e-21 Identities = 32/167 (19%), Positives = 69/167 (41%), Gaps = 6/167 (3%) Query: 1 MSKVSVLVVDDATFIRDLVKKGLRNYFPGIHTEDAVNGRKAQTLLGKEAFDLILCDWEMP 60 M+ ++LV DD IR ++ + L G N + DL++ D MP Sbjct: 1 MTGATILVADDDAAIRTVLNQALS--RAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMP 58 Query: 61 EMSGLELLTWCRQQDNYLRTVPFIMVTSRGDKENVVQAIQAGVTDFVGKPFTNEQLLTKV 120 + + +LL ++ L P ++++++ ++A + G D++ KPF +L+ + Sbjct: 59 DENAFDLLPRIKKARPDL---PVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGII 115 Query: 121 KKALAKVGKLDAVMSTAPARMNSPLNDSLSALTGGKAEVVRSAPAAA 167 +ALA+ + + + + S +A+ + R Sbjct: 116 GRALAEPKRRPSKLEDDSQDGMPLVGRS-AAMQEIYRVLARLMQTDL 161
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.8 bits (67), Expect = 0.035 Identities = 12/93 (12%), Positives = 27/93 (29%), Gaps = 15/93 (16%) Query: 159 EAAWPVLQERIKRVEKLADELYTLEKKDIGAINHSIERLRLQARKLELDGRLDAAAQADM 218 E V + R+ L + AI L + + +E L Sbjct: 227 ENLSRVEKSRLDDFSSLLHK---------QAIAKH-AVLEQENKYVEAVNELRV-----Y 271 Query: 219 AAERAELDARYKVIEARLDGLHQAFDRDSLTAR 251 ++ ++++ + + Q F + L Sbjct: 272 KSQLEQIESEILSAKEEYQLVTQLFKNEILDKL 304