PredictBias

identification of genomic and pathogenicity islands in prokaryotic genome
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A) Input parameters
Genomeseq_ful_lpl.gbThreshold dinucleotide bias2
Threshold codon bias4Threshold %GC bias3
E-value (RPSBlast)0.05Genome (non-pathogenic)
 
B) Compare a potential GI or PAI in related non-pathogenic sp. (phylogenetic tree)
Potential GI or PAI start    end  
Select Organism     
 
C) Potential GIs and PAIs in NC_004567 (download)
S.NoStartEndBiasVirulenceInsertion elementsPrediction
1lp_0001lp_0007Y        NNGenomic Island
LocusTagDNBiasCDNBias%GCBiasProduct
lp_0001314-0.367234chromosomal replication initiation protein DnaA
lp_0002317-0.471782DNA-directed DNA polymerase III subunit beta
lp_0004318-0.324487hypothetical protein
lp_0005219-0.270697DNA repair and genetic recombination protein
lp_0006416-0.504582DNA gyrase subunit B
lp_0007217-0.817334DNA gyrase subunit A
2lp_0030lp_0046Y        NYGenomic Island
LocusTagDNBiasCDNBias%GCBiasProduct
lp_0030312-1.874728pyridoxamine 5'-phosphate oxidase family
lp_0031314-1.948175cold shock protein CspL
lp_0032215-1.776607hypothetical protein
lp_0036314-1.560048*two-component system response regulator
lp_0037416-1.798052two-component system histidine protein kinase;
lp_0038417-2.680222regulator of two-component system, YycH family
lp_0039-118-2.975266regulator of two-component system, YycI family
lp_0041-117-3.023815Zn-dependent hydrolase, beta-lactamase
lp_0043-115-2.663496serine protease HtrA
lp_0045018-3.454695ribosomal RNA large subunit methyltransferase H
lp_0046-116-3.168945TetR family transcriptional regulator
3lp_0107lp_0114Y        NNGenomic Island
LocusTagDNBiasCDNBias%GCBiasProduct
lp_01070123.211179lactate racemization operon protein
lp_01080113.853042glycerol uptake facilitator protein
lp_0109-1104.505889lactate racemization operon protein LarE
lp_01111115.277259medium chain dehydrogenases/reductase
lp_01131154.597209hydroxyethylthiazole kinase
lp_01142164.303896phosphomethylpyrimidine kinase &
4lp_0298lp_0304Y        NNGenomic Island
LocusTagDNBiasCDNBias%GCBiasProduct
lp_0298623-0.765007ABC transporter permease
lp_0299627-0.860273ABC transporter ATP-binding protein
lp_03007280.105753membrane-bound protease, CAAX family
lp_03017280.166548membrane-bound protease, CAAX family
lp_03024241.316713extracellular transglycosylase
lp_03042221.811005extracellular transglycosylase
5lp_0373lp_0424Y        NNGenomic Island
LocusTagDNBiasCDNBias%GCBiasProduct
lp_0373219-1.580870cell surface protein precursor, LPXTG-motif cell
lp_0374828-6.524393extracellular protein, lysine-rich
lp_0375336-10.152526hypothetical protein
lp_0376334-8.760145membrane protein
lp_0377333-8.454695membrane protein
lp_0379635-9.961002hypothetical protein
lp_0381841-12.635815ankyrin repeat family protein
lp_03821042-11.726680membrane protein
lp_0383942-11.438423membrane protein
lp_0384528-7.914288hypothetical protein
lp_0385425-3.440748hypothetical protein
lp_0386122-0.138798NADH azoreductase
lp_03880220.649828hypothetical protein
lp_03910212.868628membrane protein
lp_0393-2173.588948galactoside O-acetyltransferase
lp_0394-1153.209540transport protein, major facilitator superfamily
lp_0395-2132.209577hydrolase, HAD superfamily, Cof family
lp_0396-1141.560024AraC family transcriptional regulator
lp_03971160.153750hydrolase, HAD superfamily, Cof family
lp_0399217-1.114127branched-chain (main: valine) amino acid
lp_0400221-4.129718Na(+)/H(+) antiporter
lp_0402834-8.820709hypothetical protein
lp_0403630-7.501983plantaricin biosynthesis protein PlnR
lp_0404431-10.221912bacteriocin immunity protein PlnL
lp_0405435-11.483833bacteriocin precursor peptide PlnK
lp_0406536-11.824545bacteriocin precursor peptide PlnJ
lp_0409636-12.198657bacteriocin immunity protein PlnM
lp_0410531-12.436752bacteriocin precursor peptide PlnN
lp_0411632-12.795535plantaricin biosynthesis protein PlnO
lp_0412532-11.788400bacteriocin immunity protein PlnP,membrane-bound
lp_0413729-11.409250plantaricin biosynthesis protein PlnQ
lp_0415728-10.864297plantaricin A precursor peptide, induction
lp_0416628-10.642931two-componet system histidine protein kinase
lp_0417322-8.066251two-component response regulator PlnC,activator
lp_0418117-6.376484two-component response regulator PlnD,repressor
lp_0419116-5.445214bacteriocin immunity protein PlnI,membrane-bound
lp_0421-116-4.230147bacteriocin precursor peptide PlnF
lp_0422-116-4.126830bacteriocin precursor peptide PlnE
lp_0423017-4.258039bacteriocin ABC-transporter, ATP-binding and
lp_0424019-3.357193bacteriocin ABC transporter, accessory factor
6lp_0473lp_0493Y        NNGenomic Island
LocusTagDNBiasCDNBias%GCBiasProduct
lp_04733141.443030lipoprotein
lp_04753181.398979hydrolase, HAD superfamily, Cof family
lp_0476213-0.995766metal-dependent phosphohydrolase, HD family
lp_0477216-1.958864lipoate-protein ligase A
lp_0479317-4.642809hypothetical protein
lp_0480219-5.952600DNA-directed RNA polymerase subunit delta
lp_0481223-6.719205CTP synthase
lp_0482334-9.350880Rgg/GadR/MutR family transcriptional activator
lp_0483435-8.694383lysine biosynthesis protein LysW
lp_0484533-8.756210ATP-dependent carboxylate-amine/thiol ligase
lp_0485634-8.753183hypothetical protein
lp_0486634-8.581206pyridoxal-phosphate-dependent aminotransferase
lp_0487734-8.993225N-acetyl-gamma-glutamyl-phosphate reductase
lp_0488632-8.888207bifunctional protein: acetyl-glutamate kinase;
lp_0489528-7.751859transketolase
lp_0490226-6.658289NADPH-dependent FMN reductase
lp_0491121-5.143732transketolase, pyrimidine-binding domain
lp_0492019-4.475269transport protein, major facilitator superfamily
lp_0493-116-3.153594hypothetical protein
7lp_0520lp_0527Y        NNGenomic Island
LocusTagDNBiasCDNBias%GCBiasProduct
lp_0520-3103.170605ATP-dependent RNA helicase
lp_0522-3134.005394holo-(acyl-carrier-protein) synthase
lp_0523-2144.312139alanine racemase
lp_0524-2153.976132toxin-antitoxin system, toxin component
lp_0525-2164.028256potassium uptake protein
lp_0526-2154.184296carbamoyl-phosphate synthase large subunit
lp_0527-1143.659104carbamoyl-phosphate synthase small subunit
8lp_0572lp_0589Y        NYGenomic Island
LocusTagDNBiasCDNBias%GCBiasProduct
lp_0572127-7.528936homoserine kinase
lp_0574229-8.025683*extracellular protein
lp_0575230-8.615774PTS system, mannose-specific EIIAB component
lp_0576232-8.992899PTS system, mannose-specific EIIC component
lp_0577332-9.345146PTS system, mannose-specific EIID component
lp_0578333-9.532376non-ribosomal peptide synthetase NpsA
lp_0579235-9.301537aspartate 1-decarboxylase
lp_0580024-6.197719metal-dependent phosphohydrolase, HD family
lp_0581-121-5.539529non-ribosomal peptide synthetase NpsB
lp_0582-117-3.3372714'-phosphopantetheinyl transferase
lp_0583-214-1.692942hypothetical protein
lp_0584-215-0.973052transport protein, major facilitator superfamily
lp_0585-2151.692802sigma54 activator, mannose PTS operon regulator
lp_0586-2173.229271PTS system, mannose-specific EIIAcomponent
lp_0587-1174.029962PTS system, mannose-specific EIIB component
lp_0588-2133.4166293-oxoacyl-ACP synthase
lp_0589-2133.002809acetyl-CoA carboxylase, biotin carboxyl carrier
9lp_0937lp_0946Y        NYGenomic Island
LocusTagDNBiasCDNBias%GCBiasProduct
lp_0937-111-3.388830membrane alanine aminopeptidase (aminopeptidase
lp_0938117-6.091374type I restriction-modification
lp_0939122-6.010440type I restriction-modification
lp_0940119-1.646178type I restriction-modification
lp_0941119-0.406596phage integrase
lp_09423190.805988type I restriction-modification
lp_09432151.081021type I restriction-modification
lp_09452162.226974histidine phosphatase superfamily protein
lp_09462150.838727mucus-binding protein, LPXTG-motif cell wall
10lp_0959lp_0971Y        NYGenomic Island
LocusTagDNBiasCDNBias%GCBiasProduct
lp_0959-1173.139508dipeptidase
lp_0960-1163.450198hypothetical protein
lp_0960a0163.243905hypothetical protein
lp_09610163.635178transposase, fragment
lp_0962-1153.159196ATP-dependent DNA helicase RecQ
lp_0963-1141.763683ribosomal large subunit pseudouridine synthase
lp_0965-2131.049207ArsR family transcriptional regulator
lp_0966-2141.560802NADPH-dependent FMN reductase
lp_0967-2141.470408hypothetical protein
lp_0968-2121.577962membrane protein
lp_0969-1131.185182membrane protein
lp_0970-2202.922938GNAT family acetyltransferase
lp_0971-1223.107800phosphoglycerate mutase family protein
11lp_1077lp_1085Y        NNGenomic Island
LocusTagDNBiasCDNBias%GCBiasProduct
lp_1077-2134.32926650S ribosomal protein L13
lp_1078-2135.04716130S ribosomal protein S9
lp_1079-1145.340572fatty acid-binding protein, DegV family
lp_1081-1145.627492hypothetical protein
lp_1082-1135.335371malate / lactate dehydrogenase
lp_10830135.359276transketolase
lp_1084-1154.102225shikimate 5-dehydrogenase
lp_1085-1193.630021phospho-2-dehydro-3-deoxyheptonate aldolase /
12lp_1158lp_1235Y        NYGenomic Island
LocusTagDNBiasCDNBias%GCBiasProduct
lp_1158-2143.741266lysozyme
lp_1159-1143.706044extracellular protein, membrane-bound
lp_1160-1153.130801cold shock protein CspP
lp_1161-1183.847855oxidoreductase, NAD-dependent
lp_1162-1173.608006ATP-dependent RNA helicase
lp_11630193.342945*nucleotide-binding protein, universal stress
lp_1164-1192.987469PTS system, cellobiose-specific EIIC component
lp_1165-1141.878802cell surface hydrolase
lp_1165a-2162.962234hypothetical protein
lp_1166-1161.881803hypothetical protein
lp_11680162.414622hypothetical protein
lp_11690120.438019glutamate dehydrogenase
lp_1171215-2.426831serine-type D-Ala-D-Ala carboxypeptidase
lp_1173117-3.974862UDP-N-acetylglucosamine 2-epimerase
lp_1174025-7.473364ribonuclease BN family protein
lp_1175130-8.886638glycerol uptake facilitator protein
lp_1176234-10.601663UDP-galactopyranose mutase
lp_1177337-11.111885polysaccharide biosynthesis protein
lp_1178337-10.605824glycosyltransferase, family 1 (GT1)
lp_1179436-10.891800oligosaccharide transporter (flippase)
lp_1180432-10.618120glycosyltransferase
lp_1181331-10.117509acyltransferase/acetyltransferase
lp_1182230-9.783198polysaccharide biosynthesis protein, chain
lp_1183228-9.246132glycosyltransferase, family 1 (GT1)
lp_1184123-8.102395glycosyltransferase
lp_1185221-6.813375polysaccharide polymerase
lp_1186222-5.706228glucose-1-phosphate thymidylyltransferase
lp_1187118-4.163545glycosylhydrolase
lp_1188016-1.580496dTDP-4-dehydrorhamnose 3,5-epimerase
lp_1189015-0.409651dTDP-glucose 4,6-dehydratase
lp_11901201.654711dTDP-4-dehydrorhamnose reductase
lp_1191-2230.618177transposase, fragment
lp_1192-218-0.118626transposase, fragment
lp_1193-217-1.756056transposase, fragment
lp_1194-219-2.134666transposase, fragment
lp_1195-219-3.308117transposase, fragment
lp_1196-221-4.088140integrase/recombinase
lp_1197-124-5.011469polysaccharide biosynthesis protein, chain
lp_1198029-6.681284polysaccharide biosynthesis protein,regulator
lp_1199032-8.428078polysaccharide biosynthesis
lp_1200034-10.440175UDP N-acetyl glucosamine 4-epimerase, NAD
lp_1201038-11.860403priming glycosyltransferase, polyprenyl
lp_1202139-12.646641glycosyltransferase, family 1 (GT1)
lp_1203135-12.305780polysaccharide biosynthesis protein
lp_1204332-11.313211polysaccharide polymerase
lp_1205230-10.097540oligosaccharide transporter (flippase)
lp_1206326-8.079798glycosyltransferase, family 1 (GT1)
lp_1207527-5.592873polysaccharide biosynthesis protein
lp_1210321-3.510581hypothetical protein
lp_1211-216-1.890758hypothetical protein
lp_1213-2160.097454transposase, fragment
lp_1214-2181.064460transposase, fragment
lp_1215-1171.786999glycosyltransferase, family 2 (GT2)
lp_1216-1183.173189glycosyltransferase, family 2 (GT2)
lp_12190152.593436UDP-galactopyranose mutase
lp_12200160.901143polysaccharide biosynthesis protein
lp_1221115-1.426299polysaccharide biosynthesis protein
lp_1225115-2.668885polysaccharide biosynthesis protein
lp_1226014-3.145323O-acetyltransferase
lp_1227014-3.900545glycosyltransferase
lp_1228015-3.989814AraC family transcriptional regulator
lp_1229115-2.850261mannose-specific adhesin, LPXTG-motif cell wall
lp_1230018-1.736370MarR family transcriptional regulator
lp_1231021-0.660195oligosaccharide transporter (flippase)
lp_12332260.848831priming
lp_12341251.579121hypothetical protein
lp_12352232.502944hypothetical protein
13lp_1245lp_1264Y        NNGenomic Island
LocusTagDNBiasCDNBias%GCBiasProduct
lp_12450213.020809L-2-hydroxyisocaproate dehydrogenase
lp_12471213.690033transport protein
lp_12481244.368972glycerol-3-phosphate cytidylyltransferase
lp_12490205.145016gluconate transport protein
lp_12500195.391798gluconokinase
lp_12510185.3268296-phosphogluconate dehydrogenase
lp_1253-1174.875886glutathione reductase
lp_1255-2164.159968peptide chain release factor 3
lp_1256-1163.120561extracellular protein
lp_12570181.814305hypothetical protein
lp_12580211.180147LysR family transcriptional regulator
lp_12592220.242182anion exporter, TauE/SafE family
lp_1260324-0.087987membrane protein
lp_1261324-0.006763oligopeptide ABC transporter substrate binding
lp_12624200.460338oligopeptide ABC transporter permease
lp_12633180.759857oligopeptide ABC transporter permease
lp_12643180.166640oligopeptide ABC transporter ATP-binding
14lp_1289lp_1295Y        NNGenomic Island
LocusTagDNBiasCDNBias%GCBiasProduct
lp_12890233.731648purine/pyrimidine phosphoribosyltransferase
lp_1290-2213.735095purine/pyrimidine permease
lp_1291-2234.000552hypothetical protein
lp_1292-2224.752767GNAT family acetyltransferase
lp_1293-3163.791556metallo-phosphoesterase
lp_1295-2173.479868manganese transport protein MntH, Nramp
15lp_1336lp_1357Y        NNGenomic Island
LocusTagDNBiasCDNBias%GCBiasProduct
lp_1336019-3.452782bifunctional protein: ABC transporter
lp_1339123-4.330636protein-methionine-sulfoxide reductase
lp_1341124-5.351560MerR family transcriptional regulator
lp_1342124-4.489580short-chain
lp_1343119-4.321944transport protein, EamA family
lp_1346120-4.553984aspartate-semialdehyde dehydrogenase
lp_1347017-4.057544hypothetical protein
lp_1348-115-3.721231hypothetical protein
lp_1350-216-3.472122NADH:flavin oxidoreductase
lp_1351-317-3.712474thioredoxin-fold protein, DsbA family,FrnE-like
lp_1352-117-3.259830MarR family transcriptional regulator
lp_1353-118-2.771809hydrolase, HAD superfamily, Cof family
lp_1354-220-3.610221hypothetical protein
lp_1354a-117-2.547332peptide pheromone precursor
lp_1355-115-2.090632two-component system histidine protein kinase;
lp_1356117-1.299995two-component system response regulator
lp_1357218-0.761486extracellular protein, membrane-anchored
16lp_1431lp_1449Y        NNGenomic Island
LocusTagDNBiasCDNBias%GCBiasProduct
lp_14310163.652945membrane protein
lp_1433-1151.755244phosphohydrolase, MutT/NudX family
lp_1435-1152.205488membrane protein
lp_1436-2141.969298riboflavin synthase, alpha chain
lp_1437-1121.8145493,4-dihydroxy-2-butanone 4-phosphate synthase
lp_1438-1141.115588riboflavin synthase, beta chain
lp_1439-1173.652559nucleotidyltransferase superfamily protein
lp_1440-1184.504769hypothetical protein
lp_14420194.138521Crp/FNR family transcriptional regulator
lp_14432234.911817TetR family transcriptional regulator
lp_14453235.082792NADH peroxidase
lp_14464244.217330cell surface protein, CscB family
lp_14475251.500651cell surface protein precursor, CscD
lp_14483260.552858cell surface protein precursor
lp_1449224-0.301382cell surface protein, CscB family
17lp_1485lp_1495Y        NNGenomic Island
LocusTagDNBiasCDNBias%GCBiasProduct
lp_1485225-1.477568hypothetical protein
lp_1486022-0.801598hypothetical protein
lp_1487125-0.449309two-component system response regulator, LuxR
lp_14882250.533036two-component system histidine protein kinase;
lp_14891262.740894hypothetical protein
lp_14901263.041069hypothetical protein
lp_14911284.070628molybdopterin-guanine dinucleotide biosynthesis
lp_14920183.831154molybdopterin precursor synthase MoaC
lp_1493-1163.461855molybdopterin-guanine dinucleotide biosynthesis
lp_14940163.441376molybdopterin biosynthesis protein MoeA
lp_1495-1153.005144molybdopterin biosynthesis protein MoaB
18lp_1690lp_1703Y        NNGenomic Island
LocusTagDNBiasCDNBias%GCBiasProduct
lp_1690021-6.056151membrane protein
lp_1692525-8.559646membrane protein
lp_1693522-7.161931transcription regulator, N-terminal fragment
lp_1693a520-6.247504transcription regulator, C-terminal fragment
lp_1694420-5.917955hypothetical protein
lp_1695420-4.591049membrane protein
lp_1696319-4.180223cyclopropane-fatty-acyl-phospholipid synthase
lp_1697118-2.844082adherence protein, chitin-binding domain
lp_1698-124-1.099715antibiotic biosynthesis monooxygenase family
lp_1699022-0.299174hypothetical protein
lp_1700025-0.363189membrane protein
lp_17011250.481581nucleotide-binding protein, universal stress
lp_17021221.191254membrane protein
lp_17032221.995211diacylglycerol kinase family protein
19lp_1717lp_1733Y        NNGenomic Island
LocusTagDNBiasCDNBias%GCBiasProduct
lp_1717-2133.619947hypothetical protein
lp_1718-2133.528587membrane protein
lp_1721-292.8123814-aminobutyrate aminotransferase
lp_1722-1101.6503304-aminobutanoate transport protein
lp_1723-1101.745722hydrolase, HAD superfamily, Cof family
lp_1724-1102.59364323S rRNA methylase
lp_17260121.895832hypothetical protein
lp_1729-1141.989046carbohydrate/proton transporter
lp_1730-1143.080829maltose phosphorylase
lp_1731-2214.589120aldose 1-epimerase
lp_1732-1153.965076isopentenyl diphosphate delta-isomerase
lp_1733-1143.031228phosphomevalonate kinase
20lp_1797lp_1812Y        NNGenomic Island
LocusTagDNBiasCDNBias%GCBiasProduct
lp_17970173.055175GNAT family acetyltransferase
lp_17980172.798889membrane protein
lp_17991213.713552hypothetical protein
lp_18001212.658799RNA-binding protein
lp_18011212.819137galactose-1-phosphate uridylyltransferase, HIT
lp_18030232.401721transport protein, major facilitator subfamily
lp_1805-1212.922311hypothetical protein
lp_1806-1213.374748hypothetical protein
lp_1807-2223.878346membrane protein
lp_1809-1243.997643membrane protein
lp_1811-2203.117962amino acid transport protein
lp_1812-1203.206794lipoprotein
21lp_1843lp_1850Y        NYGenomic Island
LocusTagDNBiasCDNBias%GCBiasProduct
lp_18433151.644319aldose 1-epimerase family protein
lp_18453151.860394ATP-dependent Hsl protease, ATP-binding subunit
lp_18462162.929432ATP-dependent protease HslV
lp_18473162.969964integrase/recombinase, XerC/CodV family
lp_18482142.548988glucose-inhibited division protein GidC
lp_18502141.721248DNA topoisomerase
22lp_1868lp_1882Y        NNGenomic Island
LocusTagDNBiasCDNBias%GCBiasProduct
lp_18681193.014670DegV family protein
lp_18690162.654360dihydrofolate reductase
lp_18700172.418361thymidylate synthase
lp_18710161.945110ABC transporter, ATP-binding protein, ChvD
lp_18721171.513370hypothetical protein
lp_18732171.609906tRNA nucleotidyltransferase/poly(A) polymerase
lp_1874-1150.840042dihydrodipicolinate reductase
lp_1876117-0.025260hydrolase, HAD superfamily, Cof family
lp_1877319-0.257754hypothetical protein
lp_1879423-0.142908DNA-binding protein
lp_18802150.564188hypothetical protein
lp_18811121.415707ribosome-associated GTPase
lp_18822121.18398130S ribosomal protein S1
23lp_2396lp_2457Y        NYGenomic Island
LocusTagDNBiasCDNBias%GCBiasProduct
lp_2396318-0.743258extracellular protein
lp_2397522-1.054672prophage P2a protein 59; extracellular
lp_2399625-2.927730prophage P2a protein 58, holin
lp_2400422-4.433174prophage P2a protein 57
lp_2401422-4.608672prophage P2a protein 56, lysin
lp_2402427-6.964175prophage P2a protein 55
lp_2403327-6.958630prophage P2a protein 54
lp_2404425-6.496093prophage P2a protein 53
lp_2405324-6.361950prophage P2a protein 52
lp_2406426-6.213966prophage P2a protein 51
lp_2407525-5.860253prophage P2a protein 50
lp_2408525-5.406598prophage P2a protein 49
lp_2409624-4.836693prophage P2a protein 48; tape measure protein
lp_2410524-3.261181prophage P2a protein 47
lp_2411523-3.344490prophage P2a protein 46
lp_2412525-2.714310prophage P2a protein 45
lp_2413522-2.944389prophage P2a protein 44
lp_2414621-3.576640prophage P2a protein 43; head-tail joining
lp_2415521-4.751209prophage P2a protein 42
lp_2416521-4.536043prophage P2a protein 41
lp_2417622-4.913758prophage P2a protein 40; major capsid protein
lp_2418624-5.484371prophage P2a protein 39; scaffold protein
lp_2419625-4.749728prophage P2a protein 38; minor head protein
lp_2420624-3.941776prophage P2a protein 37; portal protein
lp_2423629-3.210470prophage P2a protein 34; terminase small subunit
lp_2424732-4.104329prophage P2a protein 33
lp_2425330-2.427475prophage P2a protein 32
lp_2426228-2.689775**prophage P2a protein 31; phage ArpU family
lp_2427126-3.803595prophage P2a protein 30
lp_2428124-3.309768prophage P2a protein 29
lp_2429222-1.439481prophage P2a protein 28
lp_2430321-2.609042prophage P2a protein 27
lp_2431421-2.892396prophage P2a protein 26
lp_2432520-1.936877prophage P2a protein 25
lp_2433422-2.029165prophage P2a protein 24; endodeoxyribonuclease
lp_2434324-3.337203prophage P2a protein 23
lp_2435223-3.452782prophage P2a protein 22
lp_2436224-2.343853prophage P2a protein 21
lp_2437226-2.874420prophage P2a protein 20, replication protein
lp_2439227-4.952280prophage P2a protein 18
lp_2440726-5.371915prophage P2a protein 17
lp_2441828-3.879472prophage P2a protein 16
lp_24421033-4.687927prophage P2a protein 15
lp_2443A833-6.375363hypothetical protein
lp_2443B732-5.659305hypothetical protein
lp_2444432-4.666850prophage P2a protein 13
lp_2445433-6.326173prophage P2a protein 12
lp_2446433-9.289852prophage P2a protein 11
lp_2447434-9.911835prophage P2a protein 10, phage Cro/CI family
lp_2448634-10.150376prophage P2a protein 9, phage Cro/CI family
lp_2449635-11.016624prophage P2a protein 8
lp_2450533-9.792389prophage P2a protein 7; extracellular protein
lp_2451432-9.599268prophage P2a protein 6; endonuclease
lp_2452433-9.271936*prophage P2a protein 5
lp_2453331-8.993528**prophage P2a protein 4; AAA ATPase
lp_2454028-7.637582prophage P2a protein 3; DNA adenine methylase
lp_2455-120-3.673980prophage P2a protein 2, integrase
lp_2457020-3.148763*prophage P2b protein 24
24lp_2470lp_2488eY        NYGenomic Island
LocusTagDNBiasCDNBias%GCBiasProduct
lp_2470-117-3.489166prophage P2b protein 11, head-to-tail joining
lp_2471-117-3.795556prophage P2b protein 10
lp_2472-116-3.942915prophage P2b protein 9
lp_2473020-5.592322prophage P2b protein 8, helicase
lp_2474125-7.130431prophage P2b protein 7, DNA replication
lp_2475230-8.853376prophage P2b protein 6
lp_2476227-7.335074prophage P2b protein 5
lp_2477024-6.385103prophage P2b protein 4
lp_2479116-4.509626prophage P2b protein 2, phage Cro/CI family
lp_2480524-1.015113prophage P2b protein 1, integrase
lp_2482629-0.219756hypothetical protein
lp_2483730-0.267921hypothetical protein
lp_2484732-0.626062MarR family transcriptional regulator
lp_2485836-0.841892hypothetical protein
lp_24861143-0.101181mucus-binding protein, LPXTG-motif cell wall
lp_2488857-8.342935hypothetical protein
lp_2488a964-7.596667hypothetical protein
lp_2488b1164-7.419245hypothetical protein
lp_2488c1357-6.929049hypothetical protein
lp_2488d525-1.238066hypothetical protein
lp_2488e217-1.018852hypothetical protein
25lp_2550lp_2556Y        NNGenomic Island
LocusTagDNBiasCDNBias%GCBiasProduct
lp_2550-2173.015838O-acetyltransferase
lp_2551-3173.775200histidinol-phosphate aminotransferase
lp_2552-1183.854054phosphoribosyl-ATP pyrophosphatase
lp_25530164.107964phosphoribosyl-AMP cyclohydrolase
lp_2554-1163.702098Imidazole glycerol phosphate synthase cyclase
lp_25560173.095695phosphoribosylformimino-5-aminoimidazole
26lp_2569lp_2600Y        NNGenomic Island
LocusTagDNBiasCDNBias%GCBiasProduct
lp_25692131.698475hypothetical protein
lp_25702112.890024aspartate-semialdehyde dehydrogenase
lp_25723143.247113penicillin V acylase family protein
lp_25731121.241421hypothetical protein
lp_25740120.725266membrane protein
lp_25750121.252497transporter, MMPL family
lp_2578-1111.037883cell surface adherence protein,collagen-binding
lp_25790140.969282GNAT family acetyltransferase
lp_25800150.453324sulfatase, alkaline phosphatase
lp_2582-1141.861516glycerophosphodiester phosphodiesterase
lp_25850153.132294ferredoxin NAD(P) reductase
lp_2586-1163.291132cell surface hydrolase
lp_2588-1142.182101cell surface adherence protein,collagen-binding
lp_2589-2150.223096polyphosphate:nucleotide phosphotransferase,PPK2
lp_2590-115-0.332229nitroreductase family 1 protein
lp_2591-117-1.827436purine nucleosidase
lp_2593-219-3.008904ribonuclease H
lp_2594-219-3.747120sugar transport protein
lp_2595-221-3.831402bifunctional protein: transcription regulator;
lp_2596-221-3.970121formate acetyltransferase activating enzyme
lp_2597-119-3.682842DeoR family transcriptional regulator
lp_2598019-3.521218formate C-acetyltransferase
lp_2599115-3.074639DeoR family transcriptional regulator
lp_2600014-3.326163transaldolase
27lp_2636lp_2648Y        NNGenomic Island
LocusTagDNBiasCDNBias%GCBiasProduct
lp_26362101.696433extracellular protein
lp_26382120.963337membrane protein
lp_26412150.014383hypothetical protein
lp_2642117-1.432076membrane protein
lp_2643119-1.765052lipoate-protein ligase
lp_2645224-2.901726cell wall hydrolase/muramidase
lp_2647131-6.831882PTS
lp_2648-122-3.578790PTS system, N-acetylglucosamine-specific EIID
28lp_2841lp_2847Y        NNGenomic Island
LocusTagDNBiasCDNBias%GCBiasProduct
lp_28414152.113961membrane protein
lp_28425172.489283LysR family transcriptional regulator
lp_28433152.217430poly(glycerol-phosphate)
lp_28445172.362406poly(glycerol-phosphate)
lp_28457223.044224extracellular transglycosylase, with LysM
lp_28474182.457060extracellular transglycosylase, with LysM
29lp_2858lp_2878Y        NNGenomic Island
LocusTagDNBiasCDNBias%GCBiasProduct
lp_28582181.656578ABC transporter, ATP-binding protein,N-terminal
lp_28602181.508240endonuclease III
lp_28613201.011340galactoside O-acetyltransferase
lp_28622210.418842signal peptidase I
lp_28631172.117813signal peptidase I
lp_28640191.080160membrane protein
lp_2865-121-1.691775GNAT family acetyltransferase
lp_2866-123-2.809443membrane protein
lp_2867019-1.725422hypothetical protein
lp_2868019-1.426989phosphoglycerate mutase family protein
lp_2870221-2.928292hypothetical protein
lp_2871118-1.805190LysR family transcriptional regulator
lp_28721180.019993NAD(P)-dependent oxidoreductase, atypical SDR
lp_28730141.103255alcohol dehydrogenase
lp_2874012-0.480381short-chain dehydrogenase
lp_2876014-0.991760hypothetical protein
lp_2877013-0.943712nucleotide-binding protein, universal stress
lp_2878-218-3.682842maltose O-acetyltransferase
30lp_3088lp_3093Y        NNGenomic Island
LocusTagDNBiasCDNBias%GCBiasProduct
lp_30883180.328624two-component system histidine protein kinase;
lp_30894231.056803auto-inducing peptide
lp_30903221.050041TetR family transcriptional regulator
lp_30914241.630623short-chain
lp_30924211.632742succinate-semialdehyde dehydrogenase (NAD(P)+)
lp_30934181.756085lysozyme/muramidase, glycoside hydrolase family
31lp_3108lp_3161Y        NNGenomic Island
LocusTagDNBiasCDNBias%GCBiasProduct
lp_31083141.620678short-chain
lp_31103141.089000short-chain dehydrogenase
lp_31113141.069131acetyltransferase
lp_31124150.152972short-chain dehydrogenase
lp_3113414-0.032942MerR family transcriptional regulator
lp_31143120.584749mucus-binding protein, LPXTG-motif cell wall
lp_3115012-1.469529cell surface protein precursor
lp_3116-111-0.672177cell surface protein, CscB family
lp_3117-211-0.855373cell surface protein, CscC family
lp_3119-3120.884298TetR family transcriptional regulator
lp_31200112.463293GTP-binding translation elongation factor LepA
lp_31221112.040277Na(+)/H(+) antiporter
lp_31232143.200329NADH pyrophosphatase, Nudix family
lp_31242131.997138LysR family transcriptional regulator
lp_31252141.478291fumarate reductase, flavoprotein subunit
lp_3127215-0.802297mucus-binding protein, LPXTG-motif cell wall
lp_3128025-5.496529DNA-binding ferritin-like protein, DPS family
lp_3129126-5.741225hypothetical protein
lp_3130128-5.510060hypothetical protein
lp_3131227-5.074847transcription antiterminator, BglB family
lp_3132227-5.2269796-phospho-beta-glucosidase
lp_3133230-5.611830PTS system, beta-glucosides-specific EIIBCA
lp_3134128-5.499706extracellular protein
lp_3135129-5.752759transketolase
lp_3136228-6.283591SgaT/UlaA family sugar-specific permease
lp_3137227-6.532405PTS system transporter subunit IIB
lp_3138225-5.651775bifunctional protein: transcriptional
lp_3139119-2.447047membrane protein
lp_3141-118-0.979461hypothetical protein
lp_31420190.027410Type 1 glutamine amidotransferase (GATase1)-like
lp_3143-1180.606396hypothetical protein
lp_3144-116-0.005531oxidoreductase, C-terminal fragment
lp_3145-115-1.727234oxidoreductase, N-terminal fragment
lp_3150-115-2.239702malate dehydrogenase
lp_3155-119-3.931990cell surface protein, ErfK family
lp_3158018-4.401229short-chain
lp_3159116-4.427856bile acid 7-alpha-dehydratase
lp_3160013-4.016635multidrug transport protein, major facilitator
lp_3161014-3.042204hypothetical protein
32lp_3195lp_3215Y        NNGenomic Island
LocusTagDNBiasCDNBias%GCBiasProduct
lp_31953161.598253membrane protein
lp_31963151.460740GTP-binding protein/GTPase, Obg family, YchF
lp_31972180.232517hypothetical protein
lp_31980150.608950chromosome partitioning protein
lp_3199-213-0.001264chromosome partitioning ATPase
lp_3200-2150.393555Chromosome partitioning protein, DNA-binding
lp_3201-218-0.591668methyltransferase, cell division protein GidB
lp_3204-120-0.832650pyrimidine nucleoside transport protein
lp_3205-1210.071986cell surface hydrolase
lp_3206221-0.345952LysR family transcriptional regulator
lp_3207221-0.045665PLP-dependent aminotransferase
lp_3209319-0.185505cystine ABC transporter, substrate binding
lp_32104220.152887cystine ABC transporter permease
lp_3211220-0.349018cystine ABC transporter ATP-binding protein
lp_3214013-2.142683cystathionine ABC transporter, substrate binding
lp_3215-217-3.214735hypothetical protein
33lp_3371lp_3385Y        NNGenomic Island
LocusTagDNBiasCDNBias%GCBiasProduct
lp_33713170.136459hypothetical protein
lp_33723180.284874hypothetical protein
lp_33732180.409621hypothetical protein
lp_3374221-0.033708purine-cytosine transport protein
lp_3375527-3.276351hypothetical protein
lp_3377423-4.535459prophage P3 protein 13
lp_3378424-3.191105prophage P3 protein 12
lp_3379422-3.524026prophage P3 protein 11, DNA replication
lp_3380422-4.159441prophage P3 protein 10
lp_3381321-3.701389prophage P3 protein 9
lp_3382319-3.619422prophage P3 protein 8, DNA primase/helicase
lp_3383522-2.464143prophage P3 protein 7, DNA replication
lp_3384421-5.511727prophage P3 protein 6
lp_3385220-5.518287prophage P3 protein 5
34lp_3410lp_3430Y        NYGenomic Island
LocusTagDNBiasCDNBias%GCBiasProduct
lp_3410018-3.292385membrane protein
lp_3411018-3.480296extracellular protein
lp_3412019-3.589755cell surface protein, CscB family
lp_3413115-3.302385cell surface protein precursor
lp_3414114-2.921206cell surface protein, CscB family
lp_3415117-2.161984AraC family transcriptional regulator
lp_3416222-0.823567MarR family transcriptional regulator
lp_3417221-0.080813TetR family transcriptional regulator
lp_34181230.036637phosphoenolpyruvate carboxykinase
lp_3419522-0.566712hypothetical protein
lp_3420422-0.307677glutamate decarboxylase
lp_3421623-1.152469extracellular
lp_3422116-0.833370hypothetical protein
lp_3423116-1.355283hypothetical protein
lp_3425-1110.378374*hypothetical protein
lp_3426-1120.646872hypothetical protein
lp_3427-1152.013420metal-dependent hydrolase, C-terminal domain
lp_3427a-2143.202489metal-dependent hydrolase, N-terminal domain
lp_3429-2182.577976TetR family transcriptional regulator
lp_3430-1183.066609peroxidase
35lp_3492lp_3500Y        NYGenomic Island
LocusTagDNBiasCDNBias%GCBiasProduct
lp_3492-219-3.539439thiamin biosynthesis lipoprotein ApbE
lp_3493020-3.5514503-dehydroquinate dehydratase
lp_3494020-3.549842shikimate 5-dehydrogenase
lp_3495019-3.272576LysR family transcriptional regulator
lp_3496019-3.288853transposase
lp_3497323-3.089922shikimate transport protein
lp_3498424-3.227064shikimate 5-dehydrogenase
lp_3499322-3.484060shikimate 5-dehydrogenase
lp_3500216-2.573959short-chain dehydrogenase
36lp_3509lp_3548Y        NNGenomic Island
LocusTagDNBiasCDNBias%GCBiasProduct
lp_3509-119-4.379260N-acetylglucosamine kinase
lp_3510022-5.966985PTS-associated protein
lp_3512227-6.2826046-phospho-beta-glucosidase
lp_3513227-6.771374PTS system, beta-glucosides-specific EIIBCA
lp_3514130-7.478605transcription antiterminator, BlgB family
lp_3516231-7.383300transcription regulator and PTS system, EIIA
lp_3517429-5.498063cystathionine beta-lyase
lp_3518327-4.514558PTS system fructose-specific EIIBC component
lp_3519227-4.229308PTS system fructose-specific EIIA component
lp_3520221-3.258313PTS system glucose-specific transporter subunit
lp_3521220-3.073657RpiR family transcriptional regulator
lp_3522119-2.464461PTS system sucrose-specific transporter subunit
lp_3523016-2.372592N-acetylmuramic acid 6-phosphate etherase
lp_3524-114-1.941393PTS-associated protein
lp_3525-115-1.9749436-phospho-beta-glucosidase
lp_3526015-2.3545046-phospho-beta-glucosidase
lp_3527-113-2.430309PTS system beta-glucoside-specific transporter
lp_3529-112-2.814272transcription antiterminator, BlgB family
lp_3530014-3.859164trehalose phosphorylase
lp_3531117-4.887020LacI family transcriptional regulator
lp_3533018-3.913717carbohydrate symporter, GPH
lp_3534019-3.833093alpha-glucosidase
lp_3535125-4.745343hypothetical protein
lp_3536124-4.556700choloylglycine hydrolase
lp_3537122-3.422964hydrolase, HAD superfamily, Cof family
lp_3538123-4.820528transketolase
lp_3539225-6.994332transaldolase
lp_3540224-6.756828PTS system, ascorbate-specific EIIC component
lp_3541322-6.316304PTS system, lactose/cellobiose-specific EIIB
lp_3542223-6.333656PTS system, mannitol-specific EIIA component
lp_3543223-6.501687bifunctional protein: transcription regulator;
lp_3544124-5.474096phosphohydrolase, possibly 2-phosphoglycolate
lp_3545224-3.761456D-arabitol-phosphate dehydrogenase
lp_3546224-4.213662PTS system, galactitol-specific EIIC component
lp_3547223-4.115988PTS system, galactitol-specific EIIB component
lp_3548122-3.470477PTS system, galactitol-specific EIIA component
37lp_3558lp_3623Y        NYGenomic Island
LocusTagDNBiasCDNBias%GCBiasProduct
lp_3558116-3.236908GntR family transcriptional regulator
lp_3559116-2.947320RpiR family transcriptional regulator
lp_3560120-3.231265hypothetical protein
lp_3561219-2.643770lipase/esterase
lp_3562115-3.059408lipase/esterase
lp_3563014-3.504554sodium-coupled N-acetylneuraminate transporter
lp_3565015-2.054692Na(+)/H(+) antiporter
lp_3566018-0.713014N-acetylglucosamine 2-epimerase
lp_3567115-0.387985bifunctional protein: N-acetyl mannosamine
lp_3568118-0.886893N-acetylneuraminate lyase
lp_3569218-1.315419transposase
lp_3570220-1.722466transposase
lp_3571324-2.840284N-acetylmannosamine-6-phosphate 2-epimerase
lp_3572226-4.325833FAD-dependent pyridine nucleotide-disulfide
lp_3573227-5.876278pyrimidine dimer DNA glycosylase
lp_3575127-6.563669membrane protein
lp_3576126-8.178086hypothetical protein
lp_3577126-8.166777membrane protein
lp_3578125-8.694439catalase
lp_3579127-8.659001RNA polymerase (RNAP)-binding regulatory
lp_3580225-7.170066two-component system response regulator;
lp_3581126-6.204694two-component system histidine protein kinase;
lp_3581a126-4.539013auto-inducing peptide (AIP) precursor
lp_3582226-4.108539auto-inducing peptide (AIP) export/modification
lp_3583227-3.799707ATP-dependent Clp protease ATP-binding subunit
lp_3586325-3.546518NAD-independent L-lactate dehydrogenase
lp_3587124-3.856914pyruvate oxidase
lp_3588-123-3.668976Rrf2 family transcriptional regulator
lp_3589-122-3.716181pyruvate oxidase
lp_3590017-3.770683hypothetical protein
lp_3591017-2.934719membrane protein
lp_3592118-3.792999rhamnulose-1-phosphate aldolase
lp_3593115-4.491340L-rhamnose isomerase
lp_3594018-5.066525L-rhamnose mutarotase
lp_3595018-5.043727rhamnulokinase
lp_3596020-5.173329beta-rhamnose transporter, major facilitator
lp_3597119-6.578101AraC family transcriptional regulator
lp_3598121-5.332331DeoR family transcriptional regulator
lp_3599121-5.173340PTS system, galactitol-specific EIIA component
lp_3600324-4.768258PTS system, galactitol-specific EIIB component
lp_3601424-4.835275PTS system, galactitol-specific EIIC component
lp_3602426-5.302742hypothetical protein
lp_3603527-5.314422sugar-phosphate aldolase
lp_3604426-5.042348major facilitator superfamily myo-inositol
lp_3605425-5.185151myo-inositol 2-dehydrogenase-like (promiscuous)
lp_3606325-5.572353myo-inositol 2-dehydrogenase (promiscuous)
lp_3607226-5.1440742-keto-myo-inositol dehydratase (promiscuous)
lp_3608227-4.791249myo-inositol 2-dehydrogenase-like (promiscuous)
lp_3611225-4.281990major facilitator superfamily myo-inositol
lp_3612124-4.587997myo-inositol 2-dehydrogenase-like (promiscuous)
lp_3613223-3.887968hypothetical protein
lp_3614124-3.737970oxidoreductase, medium chain
lp_3615225-4.463176inosine-uridine nucleoside N-ribohydrolase
lp_3617028-6.360840transaldolase
lp_3618030-6.139822PTS system, glucitol/sorbitol-specific EIIA
lp_3619028-5.989846PTS system, glucitol/sorbitol-specific EIIB
lp_3620027-6.252094PTS system, glucitol/sorbitol-specific EIIC
lp_3621226-6.114220sorbitol operon activator
lp_3622222-5.004767sorbitol operon transcription
lp_3623218-3.010982sorbitol-6-phosphate 2-dehydrogenase
38lp_3649lp_3656Y        NNGenomic Island
LocusTagDNBiasCDNBias%GCBiasProduct
lp_3649421-3.556681GntR family transcriptional regulator
lp_3650225-7.092684regulator, Fis family
lp_3652226-7.244492PTS system, glucitol/sorbitol-specific EIIA
lp_3653223-5.915377PTS system, glucitol/sorbitol-specific EIIB
lp_3654221-6.170713PTS system, glucitol/sorbitol-specific EIIC
lp_3655118-5.189919sorbitol operon activator
lp_3656-117-3.767384sorbitol operon transcription

 
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