>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 59.2 bits (143), Expect = 8e-12 Identities = 32/169 (18%), Positives = 59/169 (34%), Gaps = 39/169 (23%) Query: 123 VVTNNHVIDGAKRIEILMA------------DGSKVVGELVGADTYSDLAVVKISSDKIK 170 ++TN HV+D + +G ++ DLA+VK S ++ Sbjct: 114 LLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGEGDLAIVKFSPNEQN 173 Query: 171 -------TVAEFADSTKLNVGEVAIAIGSPLG-TQYANSVTQGIVSSLSRTVTLKNENGE 222 A +++ + V + G P ++G ++ L Sbjct: 174 KHIGEVVKPATMSNNAETQVNQNITVTGYPGDKPVATMWESKGKITYLK----------- 222 Query: 223 TVSTNAIQTDAAINPGNSGGPLINIEGQVIGINSSKISSTPTGSNGNSG 271 A+Q D + GNSG P+ N + +VIGI+ + + N Sbjct: 223 ---GEAMQYDLSTTGGNSGSPVFNEKNEVIGIHWGGV-----PNEFNGA 263
>PF05272#Virulence-associated E family protein Length = 892 Score = 31.6 bits (71), Expect = 0.009 Identities = 24/87 (27%), Positives = 31/87 (35%), Gaps = 13/87 (14%) Query: 32 LIGANGAGKSTFLKILAGDIEPSTGHISLGPDERLSVLRQNHFDYEEERAIDVVIMGNEQ 91 L G G GKST + L G S H +G YE+ I + Sbjct: 601 LEGTGGIGKSTLINTLVGLDFFSDTHFDIG---------TGKDSYEQIAGIVAYELSE-- 649 Query: 92 LYNIMKEKDAIYMKADFS-EEDGVRAA 117 + DA +KA FS +D R A Sbjct: 650 -MTAFRRADAEAVKAFFSSRKDRYRGA 675
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 47.3 bits (112), Expect = 4e-09 Identities = 20/134 (14%), Positives = 46/134 (34%), Gaps = 11/134 (8%) Query: 4 RKENTKQAILKAMVMLLKTESFDDITTVKLSKRAGISRSSFYTHYKDKYEMID------- 56 + T+Q IL + L + + +++K AG++R + Y H+KDK ++ Sbjct: 8 EAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSE 67 Query: 57 -YYQQTFFHKLEYIFEKKYQNKEQAFLEVFEFLQREQLLSSLLSANGTKEIQA---FIIN 112 + + + V E E+ L+ K ++ Sbjct: 68 SNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQ 127 Query: 113 KVRLLITTDLQDKF 126 + + + + D+ Sbjct: 128 QAQRNLCLESYDRI 141
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 35.2 bits (81), Expect = 0.001 Identities = 24/161 (14%), Positives = 57/161 (35%), Gaps = 16/161 (9%) Query: 266 GLSQLTQATTLSDEKAKGIQSLIVGLPVLNQGIQQLNTELSTLQPPNLNADELGNSLGAI 325 L +S+E+ + SLI +Q +T + LN D+ + Sbjct: 169 KLPDEPYFQNVSEEEVLRLTSLIK---------EQFSTWQNQKYQKELNLDKKR-AERLT 218 Query: 326 AQAAKQVIAEETAAQNEELSALQA----TSVYQSLTAEQQGELAAALSQSDKSQTVSAAQ 381 A + + L + ++ + EQ+ + A ++ S + Sbjct: 219 VLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEA--VNELRVYKSQLE 276 Query: 382 TILSSVQTLSTSLQSLSQEDQSKQLEQLKEAVAQIANQSNQ 422 I S + + Q ++Q +++ L++L++ I + + Sbjct: 277 QIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLE 317
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 29.4 bits (66), Expect = 0.047 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 6/45 (13%) Query: 251 LFISSGLGGMSGAQGKAAEIAKAVAIIAEVDQSRIKTRHSQGWIS 295 L+I + G++GA G A A A IA++ + RH G++S Sbjct: 99 LYIGRIVAGITGATG-----AVAGAYIADITDGDERARHF-GFMS 137
>STREPTOPAIN#Streptopain (C10) cysteine protease family signature. Length = 398 Score = 709 bits (1831), Expect = 0.0 Identities = 398/398 (100%), Positives = 398/398 (100%) Query: 1 MNKKKLGVRLLSLLALGGFVLANPVFADQNFARNEKEAKDSAITFIQKSAAIKAGARSAE 60 MNKKKLGVRLLSLLALGGFVLANPVFADQNFARNEKEAKDSAITFIQKSAAIKAGARSAE Sbjct: 1 MNKKKLGVRLLSLLALGGFVLANPVFADQNFARNEKEAKDSAITFIQKSAAIKAGARSAE 60 Query: 61 DIKLDKVNLGGELSGSNMYVYNISTGGFVIVSGDKRSPEILGYSTSGSFDANGKENIASF 120 DIKLDKVNLGGELSGSNMYVYNISTGGFVIVSGDKRSPEILGYSTSGSFDANGKENIASF Sbjct: 61 DIKLDKVNLGGELSGSNMYVYNISTGGFVIVSGDKRSPEILGYSTSGSFDANGKENIASF 120 Query: 121 MESYVEQIKENKKLDTTYAGTAEIKQPVVKSLLDSKGIHYNQGNPYNLLTPVIEKVKPGE 180 MESYVEQIKENKKLDTTYAGTAEIKQPVVKSLLDSKGIHYNQGNPYNLLTPVIEKVKPGE Sbjct: 121 MESYVEQIKENKKLDTTYAGTAEIKQPVVKSLLDSKGIHYNQGNPYNLLTPVIEKVKPGE 180 Query: 181 QSFVGQHAATGCVATATAQIMKYHNYPNKGLKDYTYTLSSNNPYFNHPKNLFAAISTRQY 240 QSFVGQHAATGCVATATAQIMKYHNYPNKGLKDYTYTLSSNNPYFNHPKNLFAAISTRQY Sbjct: 181 QSFVGQHAATGCVATATAQIMKYHNYPNKGLKDYTYTLSSNNPYFNHPKNLFAAISTRQY 240 Query: 241 NWNNILPTYSGRESNVQKMAISELMADVGISVDMDYGPSSGSAGSSRVQRALKENFGYNQ 300 NWNNILPTYSGRESNVQKMAISELMADVGISVDMDYGPSSGSAGSSRVQRALKENFGYNQ Sbjct: 241 NWNNILPTYSGRESNVQKMAISELMADVGISVDMDYGPSSGSAGSSRVQRALKENFGYNQ 300 Query: 301 SVHQINRGDFSKQDWEAQIDKELSQNQPVYYQGVGKVGGHAFVIDGADGRNFYHVNWGWG 360 SVHQINRGDFSKQDWEAQIDKELSQNQPVYYQGVGKVGGHAFVIDGADGRNFYHVNWGWG Sbjct: 301 SVHQINRGDFSKQDWEAQIDKELSQNQPVYYQGVGKVGGHAFVIDGADGRNFYHVNWGWG 360 Query: 361 GVSDGFFRLDALNPSALGTGGGAGGFNGYQSAVVGIKP 398 GVSDGFFRLDALNPSALGTGGGAGGFNGYQSAVVGIKP Sbjct: 361 GVSDGFFRLDALNPSALGTGGGAGGFNGYQSAVVGIKP 398
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 54.8 bits (132), Expect = 3e-10 Identities = 35/144 (24%), Positives = 55/144 (38%), Gaps = 10/144 (6%) Query: 60 DISLTLAGEVTANNSSKVKIDSSKGEVKEVFVKKGDVVKVGQPLFSYETSQRLTAQSSEF 119 +I T G++T + SK VKE+ VK+G+ V+ G L +LTA +E Sbjct: 81 EIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLL------KLTALGAEA 134 Query: 120 DVQTKANQLQVAKTNAALKWETYNRKVNEINTLKSRYNTAPDESLLEQIRSAEDSVSQAL 179 D + Q + A L+ Y I K PDE + + E +L Sbjct: 135 DTL----KTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSL 190 Query: 180 SDAKTADSDVKTAQIELDKANATA 203 + + + Q EL+ A Sbjct: 191 IKEQFSTWQNQKYQKELNLDKKRA 214 Score = 39.4 bits (92), Expect = 2e-05 Identities = 28/180 (15%), Positives = 61/180 (33%), Gaps = 16/180 (8%) Query: 120 DVQTKANQLQVAKTNAALKWETYNRKVNEINTLKSRYNTAPDESL---LEQIRSAEDSVS 176 D + ++ +AK + Y VNE+ KS+ E L E + + Sbjct: 239 DFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKN 298 Query: 177 QALSDAKTADSDVKTAQIELDKANATATTEKGKLEYDTVKSDTAGTIVSLNTDLPNQSKS 236 + L + ++ +EL K + + +++ + + L Sbjct: 299 EILDKLRQTTDNIGLLTLELAKNEE-------RQQASVIRAPVSVKVQQLKVHTEGGVV- 350 Query: 237 KKENETFMEII-DKSKMLVKGNISEFDRDKLKIGQKVEV-IDRKDNSK--KWTGKVTQVG 292 ET M I+ + + V + D + +GQ + ++ ++ GKV + Sbjct: 351 -TTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNIN 409
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 83.0 bits (205), Expect = 1e-20 Identities = 31/128 (24%), Positives = 55/128 (42%), Gaps = 1/128 (0%) Query: 3 KILVVEDDDTISQVICEFLKANNYDPDCVFDGQAALDKWQTTSYDLIILDIMLPSLSGLE 62 ILV +DD I V+ + L YD + DL++ D+++P + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 63 VLKTIRKT-SDVPIIMLTALDDEYTQLVSFNHLISDYVTKPFSPLILIKRIENVLRVSTP 121 +L I+K D+P+++++A + T + + DY+ KPF LI I L Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 122 DEKRQIGD 129 + D Sbjct: 125 RPSKLEDD 132
>MECHCHANNEL#Bacterial mechano-sensitive ion channel signature. Length = 136 Score = 31.7 bits (72), Expect = 0.002 Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 8/62 (12%) Query: 10 VINGLIIVVVTSILLVLYFAMPIYYTKVKDKEVKCEFDQTSKQIKGKTVTEIRDILTKKI 69 V + LI+ ++ A+ + + KE +K+ +TEIRD+L ++ Sbjct: 82 VFDFLIVA------FAIFMAIKLINKLNRKKEEPAAAPAPTKEEV--LLTEIRDLLKEQN 133 Query: 70 NK 71 N+ Sbjct: 134 NR 135
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 41.6 bits (97), Expect = 9e-06 Identities = 28/157 (17%), Positives = 54/157 (34%), Gaps = 13/157 (8%) Query: 42 TADTDTDDESETPKKDKKSKETASQHDTQKDHKPSHTHPTPPSNDTKQTDQASSEATDKP 101 T +T T + ET +K+ K TQ+ P T P + +T Q +E + Sbjct: 1092 TKETQTTETKETATVEKEEKAKVETEKTQEV--PKVTSQVSPKQEQSETVQPQAEP-ARE 1148 Query: 102 NKDKNDTKQPDSSDQSTPSPKDQSSQKESQNKDGRPTPSPDQQKDQTPD--KTPEKSADK 159 N + K+P S +T D + + + + + + PE + Sbjct: 1149 NDPTVNIKEPQSQTNTTA---DTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPA 1205 Query: 160 TPEKGPEKATDKTPEPN-----RDAPKPIQPPLAAAP 191 T + + P+ R P ++P ++ Sbjct: 1206 TTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSN 1242
>PF05043#Transcriptional activator Length = 493 Score = 519 bits (1339), Expect = 0.0 Identities = 109/473 (23%), Positives = 217/473 (45%), Gaps = 20/473 (4%) Query: 34 ELSKALNISMLTLQTCLTNMQ-FMKEVGGITYKNGYITIWYHQHCGLQEVYQKALRHSQS 92 EL++ LN + ++ L++++ ++ + NG I ++ VY +HS Sbjct: 30 ELAELLNCTERAVKDDLSHVKSAFPDLIFHSSTNGIRIINT-DDSDIEMVYHHFFKHSTH 88 Query: 93 FKLLETLFFRDFNSLEELAEELFVSLSTLKRLIKKTNAYLMHTFGITILTSPVQVSGDEH 152 F +LE +FF + E + +E ++S S+L R+I + N + F + +PVQ+ G+E Sbjct: 89 FSILEFIFFNEGCQAESICKEFYISSSSLYRIISQINKVIKRQFQFEVSLTPVQIIGNER 148 Query: 153 QIRLFYLKYFSEAYKISEWPFGEILNLKNCERLLSLMIKEVDVRVNFTLFQHLKILSSVN 212 IR F+ +YFSE Y EWPF + + +LL L+ KE +N + + LK+L N Sbjct: 149 DIRYFFAQYFSEKYYFLEWPFEN-FSSEPLSQLLELVYKETSFPMNLSTHRMLKLLLVTN 207 Query: 213 LIRYYKGHSAVYDNKKTSQRFSQLIQSSLEFQDLSRLFHLKFGLYLDETTIAEMFSNHVN 272 L R GH D + + + + + +++ F ++ + LDE + ++F ++ Sbjct: 208 LYRIKFGHFMEVDKDSFNDQSLDFLMQAEGIEGVAQSFESEYNISLDEEVVCQLFVSYFQ 267 Query: 273 DQLEIGYAF--DSIKQDSPTGCRKVTNWVHLL----DELEIRLNLSVTNKYEVAVILHNT 326 I + +K+DS V HLL D++ ++ + + NK + LHNT Sbjct: 268 KMFFIDESLFMKCVKKDS-----YVEKSYHLLSDFIDQISVKYQIEIENKDNLIWHLHNT 322 Query: 327 TVLKEEDITANYLFFDYKKSYLNFYKQEHPHLYKAFVAGVEKLMRSEKEPISTELTNQLI 386 L +++ ++ FD K + + ++ P + + + + S+ + N L Sbjct: 323 AHLYRQELFTEFILFDQKGNTIRNFQNIFPKFVSDVKKELSHYLETLEVCSSSMMVNHLS 382 Query: 387 YAFFITWENSFLKVNQKDEKIRLLVI----ERSFNSVGNFLKKYVGEFFSITNFNELDAL 442 Y F ++ + + Q K+++LV+ + V L Y F + + EL+ Sbjct: 383 YTFITHTKHLVINLLQNQPKLKVLVMSNFDQYHAKFVAETLSYYCSNNFELEVWTELELS 442 Query: 443 TIDLEEIEKQYDVIVTDVMVGKSEELEIFFFHKMIPEAIIDKLNAFLNISFAD 495 LE + YD+I+++ ++ E + + + + ++I LNA + I + Sbjct: 443 KESLE--DSPYDIIISNFIIPPIENKRLIYSNNINTVSLIYLLNAMMFIRLDE 493
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 182 bits (463), Expect = 1e-53 Identities = 246/450 (54%), Positives = 281/450 (62%), Gaps = 32/450 (7%) Query: 35 NQTEVKANGDGNPREVIEDLAANNPAIQNIRLRYENKDLKARLENAMEVAGRDFKRAEEL 94 KA + + L DL+ LE AM + D + + L Sbjct: 122 KADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTL 181 Query: 95 EKAKQALEDQRKDLETKLKELQQDYDLAKESTSWDRQRLEKELEEKKEALELAIDQASRD 154 E K ALE ++ +LE L+ K + LE + Sbjct: 182 EAEKAALEARQAELEKALEGAMNF---------------STADSAKIKTLEAEKAALAAR 226 Query: 155 YHRATALEKELEEKKKALELAIDQASQDYNRANVLEKELETITREQEINRNLLGNAKLEL 214 + A I + LE + + E N ++ Sbjct: 227 KADLEKALEGAMNFSTADSAKIKTLEAEKAA---LEARQAELEKALEGAMNFSTADSAKI 283 Query: 215 DQLSSEKEQLTIEKAKLEEEKQISDASRQSLRRDLDASREAKKQVEKDLANLTAELDKVK 274 L +EK L EKA LE + Q+ +A+RQSLRRDLDASREAKKQ+E AE K++ Sbjct: 284 KTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLE-------AEHQKLE 336 Query: 275 EDKQISDASRQGLRRDLDASREAKKQVEKDLANLTAELDKVKEEKQISDASRQGLRRDLD 334 E +IS+ASRQ LRRDLDASREAKKQ+E AE K++E+ +IS+ASRQ LRRDLD Sbjct: 337 EQNKISEASRQSLRRDLDASREAKKQLE-------AEHQKLEEQNKISEASRQSLRRDLD 389 Query: 335 ASREAKKQVEKALEEANSKLAALEKLNKELEESKKLTEKEKAELQAKLEAEAKALKEQLA 394 ASREAKKQVEKALEEANSKLAALEKLNKELEESKKLTEKEKAELQAKLEAEAKALKE+LA Sbjct: 390 ASREAKKQVEKALEEANSKLAALEKLNKELEESKKLTEKEKAELQAKLEAEAKALKEKLA 449 Query: 395 KQAEELAKLRAGKASDSQTPDTKPGNKAVPGKGQAPQAGTKPNQNKAPMKETKRQLPSTG 454 KQAEELAKLRAGKASDSQTPD KPGNKAVPGKGQAPQAGTKPNQNKAPMKETKRQLPSTG Sbjct: 450 KQAEELAKLRAGKASDSQTPDAKPGNKAVPGKGQAPQAGTKPNQNKAPMKETKRQLPSTG 509 Query: 455 ETANPFFTAAALTVMATAGVAAVVKRKEEN 484 ETANPFFTAAALTVMATAGVAAVVKRKEEN Sbjct: 510 ETANPFFTAAALTVMATAGVAAVVKRKEEN 539 Score = 51.2 bits (122), Expect = 6e-09 Identities = 86/413 (20%), Positives = 143/413 (34%), Gaps = 50/413 (12%) Query: 1 MAKNNTNRHYSLRKLKTGTASVAVALTVLGAGFANQTEVKANGDGNPREVIEDLAANNPA 60 M KNNTNRHYSLRKLKTGTASVAVALTVLGAG T + + + Sbjct: 1 MTKNNTNRHYSLRKLKTGTASVAVALTVLGAGLVVNTNEVSAVATRSQTDTLEKVQER-- 58 Query: 61 IQNIRLRYENKDLKARLENAMEVAGRDFKRAEELEKAKQALEDQRKDLETKLKELQQDYD 120 + EN LK + + +EL + +++ + + L E Sbjct: 59 --ADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKAS--- 113 Query: 121 LAKESTSWDRQRLEKELEEKKEALELAIDQASRDYHRATALEKELEEKKKALELAIDQAS 180 +ELE +K LE A++ A +A K LE +K AL Sbjct: 114 ------------KIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLE 161 Query: 181 QDYNRANVLEKELETITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLEEEKQISDA 240 + L+ + + + LE EK +A Sbjct: 162 KA-------------------------------LEGAMNFSTADSAKIKTLEAEKAALEA 190 Query: 241 SRQSLRRDLDASREAKKQVEKDLANLTAELDKVKEDKQISDASRQGLRRDLDASREAKKQ 300 + L + L+ + + L AE + K + + +G A K Sbjct: 191 RQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKT 250 Query: 301 VEKDLANLTAELDKVKEEKQISDASRQGLRRDLDASREAKKQVEKALEEANSKLAALEKL 360 +E + A L A ++++ + + + K +E + + L Sbjct: 251 LEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNAN 310 Query: 361 NKELEESKKLTEKEKAELQAKLEAEAKALKEQLAKQAEELAKLRAGKASDSQT 413 + L + + K +L+A+ + + K A + L A + + Q Sbjct: 311 RQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQL 363
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 33.7 bits (77), Expect = 0.001 Identities = 28/155 (18%), Positives = 46/155 (29%), Gaps = 38/155 (24%) Query: 8 RMRPKTISEVIGQKHLVGEGKIIRRMVE-----ANRLSSMILYGPPGIGKTSIASAIAGT 62 R K + LVG ++ + ++++ G G GK +A A+ Sbjct: 124 RRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHDY 183 Query: 63 TRYAFRTF--------------------------NATIDSKKRLQEIAEEAKFSGGLVLL 96 + F A S R ++ + G L Sbjct: 184 GKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQ-------AEGGTLF 236 Query: 97 LDEIHRLDKTKQDFLLPLLENGTIIMIGATTENPF 131 LDEI + Q LL +L+ G +G T Sbjct: 237 LDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRS 271
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 59.7 bits (144), Expect = 6e-12 Identities = 37/90 (41%), Positives = 43/90 (47%) Query: 259 KSPEGEAGQPGEKAPEKSKEVTPAAEKPADKEANQTPERRNGNMAKTPVANNHRRLPATG 318 K E A KA + K + N K P+ R+LP+TG Sbjct: 450 KQAEELAKLRAGKASDSQTPDAKPGNKAVPGKGQAPQAGTKPNQNKAPMKETKRQLPSTG 509 Query: 319 EQANPFFTAAAVAVMTTAGVLAVTKRKENN 348 E ANPFFTAAA+ VM TAGV AV KRKE N Sbjct: 510 ETANPFFTAAALTVMATAGVAAVVKRKEEN 539
>STREPKINASE#Streptococcus streptokinase protein signature. Length = 440 Score = 815 bits (2106), Expect = 0.0 Identities = 389/440 (88%), Positives = 410/440 (93%) Query: 1 MKNYLSIGVIALLFALTFGTVKSVQAIAGYGWLPDRPPINNSQLVVSMAGIVEGTDKKVF 60 MKNYLS G+ ALLFALTFGTV SVQAIAG WL DRP +NNSQLVVS+AG VEGT++ + Sbjct: 1 MKNYLSFGMFALLFALTFGTVNSVQAIAGPEWLLDRPSVNNSQLVVSVAGTVEGTNQDIS 60 Query: 61 INFFEIDLTSQPAHGGKTEQGLSPKSKPFATDNGAMPHKLEKADLLKAIQKQLIANVHSN 120 + FFEIDLTS+PAHGGKTEQGLSPKSKPFATD+GAM HKLEKADLLKAIQ+QLIANVHSN Sbjct: 61 LKFFEIDLTSRPAHGGKTEQGLSPKSKPFATDSGAMSHKLEKADLLKAIQEQLIANVHSN 120 Query: 121 DGYFEVIDFASDATITDRNGKVYFADKDGSVTLPTQPVQEFLLKGHVRVRPYKEKPVQNQ 180 D YFEVIDFASDATITDRNGKVYFADKDGSVTLPTQPVQEFLL GHVRVRPYKEKP+QNQ Sbjct: 121 DDYFEVIDFASDATITDRNGKVYFADKDGSVTLPTQPVQEFLLSGHVRVRPYKEKPIQNQ 180 Query: 181 AKSVDVEYTVQFTPLNPDDDFRPGLKDTKLLKTLAIGDTITSQELLAQAQSILNKTHPGY 240 AKSVDVEYTVQFTPLNPDDDFRPGLKDTKLLKTLAIGDTITSQELLAQAQSILNK HPGY Sbjct: 181 AKSVDVEYTVQFTPLNPDDDFRPGLKDTKLLKTLAIGDTITSQELLAQAQSILNKNHPGY 240 Query: 241 TIYERDSSIVTHDNDIFRTILPMDQEFTYHVKNREQAYEINPKTGIKEKTNNTDLVSEKY 300 TIYERDSSIVTHDNDIFRTILPMDQEFTY VKNREQAY IN K+G+ E+ NNTDL+SEKY Sbjct: 241 TIYERDSSIVTHDNDIFRTILPMDQEFTYRVKNREQAYRINKKSGLNEEINNTDLISEKY 300 Query: 301 YVLKQGEKPYDPFDRSHLKLFTIKYVDVNTNELLKSEQLLTASERNLDFRDLYDPRDKAK 360 YVLK+GEKPYDPFDRSHLKLFTIKYVDV+TNELLKSEQLLTASERNLDFRDLYDPRDKAK Sbjct: 301 YVLKKGEKPYDPFDRSHLKLFTIKYVDVDTNELLKSEQLLTASERNLDFRDLYDPRDKAK 360 Query: 361 LLYNNLDAFDIMDYTLTGKVEDNHDKNNRVVTVYMGKRPKGAKGSYHLAYDKDLYTEEER 420 LLYNNLDAF IMDYTLTGKVEDNHD NR++TVYMGKRP+G SYHLAYDKD YTEEER Sbjct: 361 LLYNNLDAFGIMDYTLTGKVEDNHDDTNRIITVYMGKRPEGENASYHLAYDKDRYTEEER 420 Query: 421 KAYSYLRDTGTPIPDNPKDK 440 + YSYLR TGTPIPDNP DK Sbjct: 421 EVYSYLRYTGTPIPDNPNDK 440
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 33.7 bits (77), Expect = 7e-04 Identities = 10/30 (33%), Positives = 19/30 (63%) Query: 229 ALWSEHGNLVQTAQRLYIHRNSLQYKLDKF 258 AL + GN ++ A L ++RN+L+ K+ + Sbjct: 444 ALTATRGNQIKAADLLGLNRNTLRKKIREL 473
>PF05272#Virulence-associated E family protein Length = 892 Score = 34.7 bits (79), Expect = 6e-04 Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 9/56 (16%) Query: 34 IVFVGPSGCGKSTTLRMIAGLEDISEGELKIGGEVVNDKSPKDRDIAMVFQNYALY 89 +V G G GKST + + GL+ S+ IG +D Y Sbjct: 599 VVLEGTGGIGKSTLINTLVGLDFFSDTHFDIG---------TGKDSYEQIAGIVAY 645
>PF04605#Virulence-associated protein D (VapD) Length = 125 Score = 29.8 bits (67), Expect = 0.009 Identities = 8/44 (18%), Positives = 17/44 (38%), Gaps = 2/44 (4%) Query: 227 INGYKVTSWNDLTEAV-DLATRD-LGPSQTIKVTYKSHQRLKTV 268 + ++ L E + DL +D + +Q+LK + Sbjct: 80 FDITEIGEQYSLKETIQDLCAKDFHQKLKEFTEKTPKNQKLKDL 123
>ARGREPRESSOR#Bacterial arginine repressor signature. Length = 149 Score = 29.8 bits (67), Expect = 0.006 Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 11/85 (12%) Query: 1 MKKKERHEKILDILKVDGFIKVKDIIDEM-----NISDMTARRDLDTLADKGLL-IRTHG 54 M K +RH KI +I+ + +++D + N++ T RD+ L L+ + T+ Sbjct: 1 MNKGQRHIKIREIITANEIETQDELVDILKKDGYNVTQATVSRDIKEL---HLVKVPTNN 57 Query: 55 GAQYLDYSSAKDEGHEKTHTEKKVL 79 G+ YS D+ K+ L Sbjct: 58 GSYK--YSLPADQRFNPLSKLKRSL 80
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 32.0 bits (73), Expect = 0.005 Identities = 19/123 (15%), Positives = 43/123 (34%), Gaps = 8/123 (6%) Query: 372 LTAVSTAVCFLLSILLLPLVGIVPAAATAPALIIVGVMMVSSFLDVNWSKF--ADALPAF 429 L+ V V L PL+ + A A ++ G ++ + + K + Sbjct: 72 LSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPDIKKINPIEGAKRI 131 Query: 430 FAA-FFMALCYSISYGIAAAFIFYCLVK-----VVEGKTKDIHPIIWGATFLFIVNFIIL 483 F+ + SI + + + + ++K +++ T I I + +I Sbjct: 132 FSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITPLLGQILRQLMVIC 191 Query: 484 TIL 486 T+ Sbjct: 192 TVG 194
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 61.9 bits (150), Expect = 1e-14 Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 4/86 (4%) Query: 62 CLLARLDEKVVGLLNLSGEVLSQGQAEADVFMLVAKTYRGYGIGQLLLEIALDWAEENPY 121 L L+ +G + + E + VAK YR G+G LL A++WA+EN + Sbjct: 67 AFLYYLENNCIGRIKIRSNWNGYALIED---IAVAKDYRKKGVGTALLHKAIEWAKENHF 123 Query: 122 IESLKLDVQVRNTKAIYLYKKYGFRI 147 L L+ Q N A + Y K+ F I Sbjct: 124 C-GLMLETQDINISACHFYAKHHFII 148
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 41.9 bits (98), Expect = 3e-07 Identities = 13/65 (20%), Positives = 28/65 (43%) Query: 19 KETRRIARESMEIALLNLLETKPLGDITISELVTKAGVSRNAFYRNYTSKEAIIEQLLVG 78 K+ + R+ + L L + + ++ E+ AGV+R A Y ++ K + ++ Sbjct: 6 KQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWEL 65 Query: 79 VIRRI 83 I Sbjct: 66 SESNI 70
>THERMOLYSIN#Thermolysin metalloprotease (M4) family signature. Length = 544 Score = 40.0 bits (93), Expect = 1e-06 Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 3/78 (3%) Query: 69 NQPKTSQTSKKVKLSEDKAKSIALKDASVTEADAQMLSVTQDNEDGKAVYEIEFQNKDQE 128 + S ++ +D A + + + E L + D E + YE+ + Sbjct: 134 TEAAISIQQAEMIAKQDVADRVTKERPAAEEGKPTRLVIYPDEETPRLAYEVNVRFLTPV 193 Query: 129 ---YSYTIDANSGDIVEK 143 + Y IDA G ++ K Sbjct: 194 PGNWIYMIDAADGKVLNK 211
>PF03309#Bvg accessory factor Length = 271 Score = 29.7 bits (67), Expect = 0.012 Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 7/65 (10%) Query: 18 LLCIDIGGTSLKFALCHN----GQLSQQSSFPT--PSSLEKFYQLLDQEVARYSAYHFSG 71 LL ID+ T L ++ QQ T + ++ +D + A +G Sbjct: 2 LLAIDVRNTHTVVGLISGSGDHAKVVQQWRIRTEPEVTADELALTIDG-LIGDDAERLTG 60 Query: 72 IAISS 76 + S Sbjct: 61 ASGLS 65
>PF06580#Sensor histidine kinase Length = 349 Score = 182 bits (463), Expect = 2e-54 Identities = 70/324 (21%), Positives = 133/324 (41%), Gaps = 34/324 (10%) Query: 250 LSKAYRMQYNRSGDLLAYVAVRKSYLLAEAVRTVFVYGLVSLLLAWLLLQLL-FRVFRNY 308 L+ AYR R G L + + A + + V+ W LL + + Sbjct: 55 LTHAYRSFIKRQG-WLKLNMGQIILRVLPACVVIGMVWFVANTSIWRLLAFINTKPVAFT 113 Query: 309 IQQVSEITDTVEMVAAGDLSLTIDNSHMELELYHISEAINQMLASIKAYIDEVYVLEVEQ 368 + I V +V + M LY + +A ID+ + Sbjct: 114 LPLALSIIFNVVVV-----------TFMWSLLYF---GWHFFKNYKQAEIDQWK-MASMA 158 Query: 369 RDAQMRALQSQINPHFLYNTLEYIRMYALSCQQEELADVIYAFASLLRNNI--SQDKMTT 426 ++AQ+ AL++QINPHF++N L IR L + +++ + + L+R ++ S + + Sbjct: 159 QEAQLMALKAQINPHFMFNALNNIRALILE-DPTKAREMLTSLSELMRYSLRYSNARQVS 217 Query: 427 LKEELAFCEKYIYLYQMRYPDSFAYHVKIDESVADLAIPKFVIQPLVENYFVHGIDYSRH 486 L +EL + Y+ L +++ D + +I+ ++ D+ +P ++Q LVEN HGI Sbjct: 218 LADELTVVDSYLQLASIQFEDRLQFENQINPAIMDVQVPPMLVQTLVENGIKHGIAQLPQ 277 Query: 487 DNALSIKALDETDHLLIQVLDNGRGISQERLADMEKRLQEHQTTGNSSIGLQNVYLRLFH 546 + +K + + ++V + G L T ++ GLQNV RL Sbjct: 278 GGKILLKGTKDNGTVTLEVENTG-------------SLALKNTKESTGTGLQNVRERLQM 324 Query: 547 HFRDRVSWSMAKEPNGGFIIQIRI 570 + ++++ G + I Sbjct: 325 LYGTEAQIKLSEKQ-GKVNAMVLI 347
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 84.1 bits (208), Expect = 2e-19 Identities = 35/170 (20%), Positives = 62/170 (36%), Gaps = 10/170 (5%) Query: 3 KVLLVDDEYMILQGLTMIIDWQALGFEVVQTARSGKEALAYLTQYPVDVMISDVTMPGMT 62 +L+ DD+ I L + G++V + ++ D++++DV MP Sbjct: 5 TILVADDDAAIRTVLNQAL--SRAGYDVR-ITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 63 GLDLIEAAKTYHPQLQTLILSGYQEFSYVQKAMELETKGYLLKPVDKAELQAKMKQFKDW 122 DL+ K P L L++S F KA E YL KP D EL + + Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 123 LDAQQAESIRQEAYHDSLLTLWLTDELSEKEFQQLSQGLPAAALTGFTVL 172 + ++ L+ Q++ + L T T++ Sbjct: 122 PKRRPSKLEDDSQDGMPLVG-------RSAAMQEIYRVLARLMQTDLTLM 164
>ARGREPRESSOR#Bacterial arginine repressor signature. Length = 149 Score = 123 bits (311), Expect = 4e-39 Identities = 60/146 (41%), Positives = 92/146 (63%), Gaps = 2/146 (1%) Query: 1 MNKKETRHQLIRSLISETTIHTQQELQERLQKNGITITQATLSRDMKELNLVKVTSGNDT 60 MNK + RH IR +I+ I TQ EL + L+K+G +TQAT+SRD+KEL+LVKV + N + Sbjct: 1 MNKGQ-RHIKIREIITANEIETQDELVDILKKDGYNVTQATVSRDIKELHLVKVPTNNGS 59 Query: 61 HYEALAISQTRWEH-RLRFYMEDALVMLKIVQHQIILKTLPGLAQSFGSILDAMQIPEIV 119 + +L Q +L+ + DA V + H I+LKT+PG AQ+ G+++D + EI+ Sbjct: 60 YKYSLPADQRFNPLSKLKRSLMDAFVKIDSASHLIVLKTMPGNAQAIGALMDNLDWEEIM 119 Query: 120 ATVCGDDTCLIVCEDNEQAKACYETL 145 T+CGDDT LI+C ++ K + + Sbjct: 120 GTICGDDTILIICRTHDDTKVVQKKI 145
>ARGDEIMINASE#Bacterial arginine deiminase signature. Length = 409 Score = 578 bits (1492), Expect = 0.0 Identities = 191/410 (46%), Positives = 276/410 (67%), Gaps = 9/410 (2%) Query: 5 TPIHVYSEIGKLKKVLLHRPGKEIENLMPDYLERLLFDDIPFLEDAQKEHDAFAQALRDE 64 PI+++SEIG+LKKVLLHRPG+E+ENL P ++ LFDDIP+LE A++EH+ FA L++ Sbjct: 6 NPINIFSEIGRLKKVLLHRPGEELENLTPFIMKNFLFDDIPYLEVARQEHEVFASILKNN 65 Query: 65 GIEVLYLETLAAESLVTP-EIREAFIDEYLSEANIRGRATKKAIRELLMAIEDNQELIEK 123 +E+ Y+E L +E LV+ + FI +++ EA I+ T +++ ++ +I K Sbjct: 66 LVEIEYIEDLISEVLVSSVALENKFISQFILEAEIKTDFTINLLKDYFSSL-TIDNMISK 124 Query: 124 TMAGVQKSELPEIPASEKGLTDLVESNYPFAIDPMPNLYFTRDPFATIGTGVSLNHMFSE 183 ++GV EL +S L DLV F IDPMPN+ FTRDPFA+IG GV++N MF++ Sbjct: 125 MISGVVTEELKNYTSS---LDDLVNGANLFIIDPMPNVLFTRDPFASIGNGVTINKMFTK 181 Query: 184 TRNRETLYGKYIFTHHPIYGGGKVPMVYDRNETTRIEGGDELVLSKDVLAVGISQRTDAA 243 R RET++ +YIF +HP+Y VP+ +R E +EGGDELVL+K +L +GIS+RT+A Sbjct: 182 VRQRETIFAEYIFKYHPVYKE-NVPIWLNRWEEASLEGGDELVLNKGLLVIGISERTEAK 240 Query: 244 SIEKLLVNIFKQNLGFKKVLAFEFANNRKFMHLDTVFTMVDYDKFTIHPEIEGDLRVYSV 303 S+EKL +++FK F +LAF+ NR +MHLDTVFT +DY FT + +Y + Sbjct: 241 SVEKLAISLFKNKTSFDTILAFQIPKNRSYMHLDTVFTQIDYSVFTSFTSDDMYFSIYVL 300 Query: 304 TYDNE--ELHIVEEKGDLAELLAANLGVEKVDLIRCGGDNLVAAGREQWNDGSNTLTIAP 361 TY+ ++HI +EK + ++L+ LG K+D+I+C G +L+ REQWNDG+N L IAP Sbjct: 301 TYNPSSSKIHIKKEKARIKDVLSFYLG-RKIDIIKCAGGDLIHGAREQWNDGANVLAIAP 359 Query: 362 GVVVVYNRNTITNAILESKGLKLIKIHGSELVRGRGGPRCMSMPFEREDI 411 G ++ Y+RN +TN + E G+K+ +I SEL RGRGGPRCMSMP REDI Sbjct: 360 GEIIAYSRNHVTNKLFEENGIKVHRIPSSELSRGRGGPRCMSMPLIREDI 409
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 405 bits (1043), Expect = e-145 Identities = 141/315 (44%), Positives = 204/315 (64%), Gaps = 6/315 (1%) Query: 3 KQKIVVALGGNAIL--STDASAKAQQEALISTSKSLVKLIKEGHEVIVTHGNGPQVGNLL 60 +++V+ALGGNA+ S + + + T++ + ++I G+EV++THGNGPQVG+LL Sbjct: 2 GKRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLL 61 Query: 61 LQQAAADSEKN-PAMPLDTCVAMTEGSIGFWLVNALDNELQAQGIQKEVAAVVTQVIVDA 119 L A + PA P+D AM++G IG+ + AL NEL+ +G++K+V ++TQ IVD Sbjct: 62 LHMDAGQATYGIPAQPMDVAGAMSQGWIGYMIQQALKNELRKRGMEKKVVTIITQTIVDK 121 Query: 120 KDPAFENPTKPIGPFLTEEDAKKQMAESGASFKEDAGRGWRKVVPSPKPVGIKEANVIRS 179 DPAF+NPTKP+GPF EE AK+ E G KED+GRGWR+VVPSP P G EA I+ Sbjct: 122 NDPAFQNPTKPVGPFYDEETAKRLAREKGWIVKEDSGRGWRRVVPSPDPKGHVEAETIKK 181 Query: 180 LVDSGVVVVSAGGGGVPVVEDATSKTLTGVEAVIDKDFASQTLSELVDADLFIVLTGVDN 239 LV+ GV+V+++GGGGVPV+ + + GVEAVIDKD A + L+E V+AD+F++LT V+ Sbjct: 182 LVERGVIVIASGGGGVPVILED--GEIKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNG 239 Query: 240 VYVNFNKPDQAKLEEVTVSQMKEYITQDQFAPGSMLPKVEAAIAFVENKPNAKAIITSLE 299 + + + L EV V ++++Y + F GSM PKV AAI F+E +AII LE Sbjct: 240 AALYYGTEKEQWLREVKVEELRKYYEEGHFKAGSMGPKVLAAIRFIEW-GGERAIIAHLE 298 Query: 300 NIDNVLSANAGTQII 314 L GTQ++ Sbjct: 299 KAVEALEGKTGTQVL 313
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 153 bits (388), Expect = 2e-50 Identities = 58/157 (36%), Positives = 94/157 (59%), Gaps = 2/157 (1%) Query: 5 IGLYTGSFDPVTNGHLDIVKRASGLFDQIYVGIFDNPTKKSYFKLEVRKAMLTQALADFT 64 +Y GSFDP+T GHLDI++R LFDQ+YV + NP K+ F ++ R + +A+A Sbjct: 2 NAIYPGSFDPITFGHLDIIERGCRLFDQVYVAVLRNPNKQPMFSVQERLEQIAKAIAHLP 61 Query: 65 NVIVVTSHERLAIDVAKELRVTHLIRGLRNATDFEYEENLEYFNHLLAPNIETVYLISRN 124 N V + E L ++ A++ + ++RGLR +DFE E + N LA ++ETV+L + Sbjct: 62 NAQVDSF-EGLTVNYARQRQAGAILRGLRVLSDFELELQMANTNKTLASDLETVFLTTST 120 Query: 125 KWQALSSSRVRELIHFQSSLEGLVPQSVIAQV-EKMN 160 ++ LSSS V+E+ F ++E VP V A + ++ + Sbjct: 121 EYSFLSSSLVKEVARFGGNVEHFVPSHVAAALYDQFH 157
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 31.7 bits (72), Expect = 0.004 Identities = 13/76 (17%), Positives = 34/76 (44%), Gaps = 9/76 (11%) Query: 50 LAQSLKTKKNQLVGLLLPDISNPFF-PRLARGAEEYLKEKGYRVMLGNISDSEALEE--- 105 +++ L +Q+VG+ D N ++ L + E L + G++ +++D E + + Sbjct: 16 VSKRLLEAGHQVVGI---DNLNDYYDVSLKQARLELLAQPGFQFHKIDLADREGMTDLFA 72 Query: 106 --EYVHVLLQSNAAGI 119 + V + + + Sbjct: 73 SGHFERVFISPHRLAV 88
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 30.2 bits (68), Expect = 0.005 Identities = 42/160 (26%), Positives = 58/160 (36%), Gaps = 25/160 (15%) Query: 70 GLIIILWASMVHWVSASYCYLLLFSLLFSLF--DWRSQ------EYPFILWLFSFVSLLL 121 L+ + A + + LLL +L +L D P + F L Sbjct: 118 ALLSVAVAMTLAPGWGTLAALLLTWVLVALTFIDLDKMLLPDQLTLPLLWGGLLFNLLGG 177 Query: 122 FYSIN---------YLSLILLLLGLLAHLRPFSIGAGDFFYLASLALVLDLTSLIWLIQL 172 F S+ YL L L +G GDF LA+L L +L ++ L Sbjct: 178 FVSLGDAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLL 237 Query: 173 ASLAGITACLLL-------GIKRIPFIPYLSFGLFWIVLL 205 +SL G + L K IPF PYL+ WI LL Sbjct: 238 SSLVGAFMGIGLILLRNHHQSKPIPFGPYLAIA-GWIALL 276
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 151 bits (383), Expect = 1e-49 Identities = 49/154 (31%), Positives = 85/154 (55%), Gaps = 4/154 (2%) Query: 19 KKEASKNEKT--KAVLNQAVADLSVAASIVHQVHWYMRGPGFLYLHPKMDELLDSLNANL 76 K E +K +T + LN +++ + S +H+ HWY++GP F LH K +EL D + Sbjct: 2 KTENAKTNQTLVENSLNTQLSNWFLLYSKLHRFHWYVKGPHFFTLHEKFEELYDHAAETV 61 Query: 77 DEMSERLITIGGAPYSTLAEFSKHSKLDEAKGTYDKTVAQHLARLVEVYLYLSSLYQVGL 136 D ++ERL+ IGG P +T+ E+++H+ + + + + ++ + LV Y +SS + + Sbjct: 62 DTIAERLLAIGGQPVATVKEYTEHASITDGGN--ETSASEMVQALVNDYKQISSESKFVI 119 Query: 137 DITDEEGDAGTNDLFTAAKTEAEKTIWMLQAERG 170 + +E D T DLF E EK +WML + G Sbjct: 120 GLAEENQDNATADLFVGLIEEVEKQVWMLSSYLG 153
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 124 bits (312), Expect = 5e-41 Identities = 82/91 (90%), Positives = 87/91 (95%) Query: 1 MANKQDLIAKVAEATELTKKDSAAAVDAVFSTIEAFLAEGEKVQLIGFGNFEVRERAARK 60 MANKQDLIAKVAEATELTKKDSAAAVDAVFS + ++LA+GEKVQLIGFGNFEVRERAARK Sbjct: 1 MANKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARK 60 Query: 61 GRNPQTGAEIEIAASKVPAFKAGKALKDAVK 91 GRNPQTG EI+I ASKVPAFKAGKALKDAVK Sbjct: 61 GRNPQTGEEIKIKASKVPAFKAGKALKDAVK 91
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 28.0 bits (62), Expect = 0.026 Identities = 13/37 (35%), Positives = 18/37 (48%) Query: 119 KSEETEDYITDYVEGLVAAGLGAYQEDNLHMKVKLRS 155 K E +D YVE A Y E+N ++K+RS Sbjct: 48 KQYEDDDMDVSYVEEEGKAAFLYYLENNCIGRIKIRS 84
>PF06580#Sensor histidine kinase Length = 349 Score = 28.7 bits (64), Expect = 0.015 Identities = 19/109 (17%), Positives = 32/109 (29%), Gaps = 15/109 (13%) Query: 19 LVGLVLLSVFGWVVGITGGYIYLPYSYRWLSWGMDSFPNLLDSALSYYYFWTALVLFVIT 78 ++ + +S+ G V +T Y WL M A V+ Sbjct: 42 MIFNIAISLMGLV--LTHAYRSFIKRQGWLKLNMGQI---------ILRVLPACVVIG-- 88 Query: 79 FLALLVIILYPRIYTEVQLRHKNKKGTLLLKKSAIESYVATAIQTAGLM 127 + + R+ + K TL L S I + V + L Sbjct: 89 MVWFVANTSIWRLLAFIN--TKPVAFTLPLALSIIFNVVVVTFMWSLLY 135
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 85.3 bits (211), Expect = 2e-21 Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 1/119 (0%) Query: 2 IKILLVEDDLSLSNSIFDFLDD-FADVMQVFDGDEGLYEAESGIYDLILLDLMLPEKNGF 60 IL+ +DD ++ + L DV + +G DL++ D+++P++N F Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 61 QVLKELREKDIKIPVLIMTAKEGLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRT 119 +L +++ +PVL+M+A+ E GA DYL KPF L EL I L Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122
>PF06580#Sensor histidine kinase Length = 349 Score = 39.1 bits (91), Expect = 2e-05 Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 5/75 (6%) Query: 312 YGKIFYFQNQVNRSLRMDKALLKQLITILFDNAIKY----TDKNGIIEIIVKTTDKNLLI 367 + F+NQ+N ++ D + L+ L +N IK+ + G I + + + + Sbjct: 236 FEDRLQFENQINPAIM-DVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTL 294 Query: 368 SVIDNGPGITDEEKK 382 V + G K+ Sbjct: 295 EVENTGSLALKNTKE 309
>SECA#SecA protein signature. Length = 901 Score = 32.5 bits (74), Expect = 0.001 Identities = 25/131 (19%), Positives = 43/131 (32%), Gaps = 16/131 (12%) Query: 59 VDKIILIGGQNVDPKYYQEEKAAFDDDFSPERDTFE--LAIIKEAITLKKPILGICRGTQ 116 + + + D E + + E E LA E K+ ++G + Sbjct: 703 IPGLQERLKNDFDLDLPIAEWLDKEPELHEE-TLRERILAQSIEVYQRKEEVVG----AE 757 Query: 117 LMNVALGGNLNQHIDSHWQEAPSDFLSH--EMIIEPDSILYPIYGHKTLINSFHRQSLKT 174 +M G + Q +DS W+E H M I Y K + R+S Sbjct: 758 MMRHFEKGVMLQTLDSLWKE-------HLAAMDYLRQGIHLRGYAQKDPKQEYKRESFSM 810 Query: 175 VAKDLKVIARD 185 A L+ + + Sbjct: 811 FAAMLESLKYE 821
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 66.8 bits (163), Expect = 5e-15 Identities = 23/131 (17%), Positives = 50/131 (38%), Gaps = 2/131 (1%) Query: 3 VLIIEDDPMVDFIHRNYLEKLNLFDRIISSDSMKAVQSILTDYAIDLILLDIHITDGNGI 62 +L+ +DD + + L + + + + + + DL++ D+ + D N Sbjct: 6 ILVADDDAAIRTVLNQALSRAGY--DVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 63 QFLEKWRTQHIPCEVIIISAANDGNIIRDGFHLGIIDYLIKPFTFERFQESIQQFVTHRE 122 L + + V+++SA N G DYL KPF I + + + Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 123 HLANQQLEQAQ 133 ++ + +Q Sbjct: 124 RRPSKLEDDSQ 134
>MYCMG045#Hypothetical mycoplasma lipoprotein (MG045) signature. Length = 483 Score = 36.6 bits (84), Expect = 1e-04 Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 4/82 (4%) Query: 31 SGSQSDKLVIYNWGDYIDPALLKKFTKETGIEVQYETFDSNEAMYTKIKQGGTTYDIAVP 90 S S V+ N+ YI P LL++ + + + T+ SNE + TY +AV Sbjct: 21 SSCGSTTFVLANFESYISPLLLER--VQEKHPLTFLTYPSNEKLINGF--ANNTYSVAVA 76 Query: 91 SDYTIDKMIKENLLNKLDKSKL 112 S Y + ++I+ +LL+ +D S+ Sbjct: 77 STYAVSELIERDLLSPIDWSQF 98
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 32.1 bits (73), Expect = 8e-04 Identities = 30/141 (21%), Positives = 55/141 (39%), Gaps = 13/141 (9%) Query: 18 EKAEAAIYQFLEAIGENPNREGLLDTPKRVAKMYAEMFLGLGK---DPKEEFTAVFKEQH 74 E+ Q A+ NPN++ + +R+ + A+ L D E T + Q Sbjct: 21 ERGCRLFDQVYVAVLRNPNKQPMFSVQERL-EQIAKAIAHLPNAQVDSFEGLTVNYARQR 79 Query: 75 EDVVIVKDISFYSICEHHLVPFYGKAHIA------YLPSDGRVTGL-SKLARAVEVASKR 127 + I++ + S E L +A +L + + L S L + EVA Sbjct: 80 QAGAILRGLRVLSDFELELQMANTNKTLASDLETVFLTTSTEYSFLSSSLVK--EVARFG 137 Query: 128 PQLQERLTSQIADALVEALNP 148 ++ + S +A AL + +P Sbjct: 138 GNVEHFVPSHVAAALYDQFHP 158
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 33.2 bits (76), Expect = 0.001 Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 11/85 (12%) Query: 55 AIASLTKLVTAYLVLDKVKSGQLQLSDQVNLSDYAFELTKDRSLSNVPFDKK----TYSV 110 + S K+V VL +V +G QL ++ + + P +K +V Sbjct: 63 PMMSTFKVVLCGAVLARVDAGDEQLERKI-------HYRQQDLVDYSPVSEKHLADGMTV 115 Query: 111 QDLLTATLVASSNSAAIALAEKVAG 135 +L A + S NSAA L V G Sbjct: 116 GELCAAAITMSDNSAANLLLATVGG 140
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 31.3 bits (70), Expect = 0.003 Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 7/47 (14%) Query: 184 NKWYLFPYDWSLKLLEPMTRMRINSIPFGAEFVPDYSQIFISLFLGI 230 NK Y+ +W+ +P+T+ +IN+IP AEF+ + S I S +G+ Sbjct: 639 NKAYI---EWT----DPITKAKINTIPTSAEFIKNLSSIRRSSNVGV 678
>NISIN#Nisin signature. Length = 57 Score = 26.7 bits (58), Expect = 0.001 Identities = 17/32 (53%), Positives = 23/32 (71%), Gaps = 2/32 (6%) Query: 4 TIKDFDLDL-KTNKKDT-ATPYVGSRYLCTPG 33 + KDF+LDL +KKD+ A+P + S LCTPG Sbjct: 2 STKDFNLDLVSVSKKDSGASPRITSISLCTPG 33
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 73.7 bits (181), Expect = 2e-17 Identities = 30/130 (23%), Positives = 57/130 (43%), Gaps = 1/130 (0%) Query: 3 KILAIDDDKEILKLMKTALEIENYHVITCQEIELPIVFDDFKGYDLILLDIMMPNISGTE 62 IL DDD I ++ AL Y V + DL++ D++MP+ + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 63 FCYKIREE-VHSPIIFVSALDGDNEIVQALNIGGDDFIVKPFSLKQFVAKVNSHLKREER 121 +I++ P++ +SA + ++A G D++ KPF L + + + L +R Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 122 AKIKNEAEER 131 K E + + Sbjct: 125 RPSKLEDDSQ 134
>BACTRLTOXIN#Bacterial toxin signature. Length = 266 Score = 93.1 bits (231), Expect = 7e-25 Identities = 56/218 (25%), Positives = 96/218 (44%), Gaps = 24/218 (11%) Query: 37 TTNRHNLESLYKHDSNLIEADSIKNSPDIVTSHMLKYSVKDKNLSVF------FEKDWIS 90 T N++ LY D + + A +K S D +H L Y++ DK L + + ++ Sbjct: 45 TGTMGNMKYLY--DDHYVSATKVK-SVDKFLAHDLIYNISDKKLKNYDKVKTELLNEDLA 101 Query: 91 QEFKDKEVDIYAL---------SAQEVCECPGKRYEAFGGITLTN----SEKKEIKVPVN 137 +++KD+ VD+Y S V + G + +GGIT V V Sbjct: 102 KKYKDEVVDVYGSNYYVNCYFSSKDNVGKVTGGKTCMYGGITKHEGNHFDNGNLQNVLVR 161 Query: 138 VWDKSKQQPPMFITVNKPKVTAQEVDIKVRKLLIKKYDIYNNREQKYSKGTVTLDLNSGK 197 V++ + + +K VTAQE+DIK R LI K ++Y Y G + N+G Sbjct: 162 VYENKRNTISFEVQTDKKSVTAQELDIKARNFLINKKNLYEFNSSPYETGYIKFIENNGN 221 Query: 198 DIVFDLYYFGNGDF--NSMLKIYSNNERIDSTQFHVDV 233 +D+ F + L +Y++N+ +DS ++V Sbjct: 222 TFWYDMMPAPGDKFDQSKYLMMYNDNKTVDSKSVKIEV 259
>BACTRLTOXIN#Bacterial toxin signature. Length = 266 Score = 111 bits (280), Expect = 3e-32 Identities = 65/234 (27%), Positives = 101/234 (43%), Gaps = 35/234 (14%) Query: 8 NLRNLYSTYDPTEVKGKINEGPPFSGSLFYK--NIPYGNSSIELKVELNSVEKANFFSGK 65 N++ LY + + K K + + L Y + N ++K EL + + A + + Sbjct: 50 NMKYLYDDHYVSATKVK-SVDKFLAHDLIYNISDKKLKNYD-KVKTELLNEDLAKKYKDE 107 Query: 66 RVDIFTLEYSPPCNSNIKKNS----------YGGITLSDGNRID---KKNIPVNIFIDGV 112 VD++ Y C + K N YGGIT +GN D +N+ V ++ + Sbjct: 108 VVDVYGSNYYVNCYFSSKDNVGKVTGGKTCMYGGITKHEGNHFDNGNLQNVLVRVYENKR 167 Query: 113 QQKYSYTDISTVSTDKKEVTIQELDVKSRYYLQKHFNIYGFGDVKDFGRSSRFQSGFEEG 172 T V TDKK VT QELD+K+R +L N+Y F S +E G Sbjct: 168 N-----TISFEVQTDKKSVTAQELDIKARNFLINKKNLYEFNS-----------SPYETG 211 Query: 173 NIIFHLNSGERISYNLFDT--GHGDRESMLKKYSDNKTAYSDQLHIDIYLVKFN 224 I F N+G Y++ D+ L Y+DNKT S + I+++L N Sbjct: 212 YIKFIENNGNTFWYDMMPAPGDKFDQSKYLMMYNDNKTVDSKSVKIEVHLTTKN 265
>PF07212#Hyaluronoglucosaminidase Length = 336 Score = 549 bits (1416), Expect = 0.0 Identities = 286/373 (76%), Positives = 306/373 (82%), Gaps = 38/373 (10%) Query: 1 MAENIPLRVQFKRMKAAEWASSDVVLLEGEIGFETDTGFAKFGDGQNTFSKLKYLTGPKG 60 M E IPLRVQFKRM A EW SDV+LLE EIGFETDTG+AKFGDG+N FSKLKYL Sbjct: 1 MTETIPLRVQFKRMTAEEWTRSDVILLESEIGFETDTGYAKFGDGKNQFSKLKYL----- 55 Query: 61 PKGDTGLQGKTGGTGSRGPAGKPGTTDYDQLQNKPDLGAFAQKEETNSKITKLESSKADK 120 NKPDLGAFAQKEETNSKITKLESSKADK Sbjct: 56 --------------------------------NKPDLGAFAQKEETNSKITKLESSKADK 83 Query: 121 NAVYLKAESNAKLDEKLNLKGGVMTGQLQFKPN-SGIKPSSSVGGAINIDMSKSEGAAMV 179 NAVYLKAES +LD+KLNLKGGVMTGQLQFKPN SGIKPSSSVGGAINIDMSKSEGA +V Sbjct: 84 NAVYLKAESKIELDKKLNLKGGVMTGQLQFKPNKSGIKPSSSVGGAINIDMSKSEGAGVV 143 Query: 180 MYTNKDTTDGPLMILRSNKDTFDQSVQFVDYKGTTNAVNIVMRQPTTPNFSSALNITSAN 239 +Y+N DT+DGPLM LR+ K+TF+QS FVDY G TNAVNI MRQPTTPNFSSALNITS N Sbjct: 144 VYSNNDTSDGPLMSLRTGKETFNQSALFVDYSGKTNAVNIAMRQPTTPNFSSALNITSGN 203 Query: 240 EGGSAMQIRGVEKALGTLKITHENPSVDKEYDKNAAALSIDIVKKQKGGKGTAAQGIYIN 299 E GSAMQIRGVEKALGTLKITHENP+V+ YD+NAAALSIDIVKKQKGGKGTAAQGIYIN Sbjct: 204 ENGSAMQIRGVEKALGTLKITHENPNVEANYDENAAALSIDIVKKQKGGKGTAAQGIYIN 263 Query: 300 STSGTTGKLLRIRNLNDDKFYVKPDGGFYAKETSQIDGNLKLKDPIANDHAATKAYVDGE 359 STSGTTGKLLRIRNL DDKFYVK DGGFYAK+TSQIDGNLKLK+P A+DHAATKAYVD E Sbjct: 264 STSGTTGKLLRIRNLGDDKFYVKHDGGFYAKKTSQIDGNLKLKNPTADDHAATKAYVDSE 323 Query: 360 VEKLKALLAAKQM 372 V+KLKALL KQ+ Sbjct: 324 VKKLKALLMDKQV 336
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 33.4 bits (76), Expect = 0.006 Identities = 58/305 (19%), Positives = 108/305 (35%), Gaps = 30/305 (9%) Query: 679 LGTAFEGFGNGVKSALEGVGAVIESFGSAVRNVLDGVANILDSMGTAALNAGRGVK-EMA 737 G G + L G ++ +F + + L + +D + + G E+A Sbjct: 124 AGNILGGGAENIGDNLGKAGGILSTFQNFLGTALSSMK--IDELIKKQKSGGNVSSSELA 181 Query: 738 K-GIKMLVDL--SLGDLVATLAAVASGLGKMASSAGEMTTLGSAMSKVAN--GMTRLATS 792 K I+++ L ++ L + + + L + S L +K+ N + + Sbjct: 182 KASIELINQLVDTVASLNNNVNSFSQQLNTLGSVLSNTKHLNGVGNKLQNLPNLDNIGAG 241 Query: 793 ATIAITGLTVFATTMATIKTAVATLPPVLTMAASGFTTFTTQAVAAVTGLAAINAPITMF 852 ++G+ + + A A T AA+G TT+ + V + Sbjct: 242 LDT-VSGILSAISASFILSNADA---DTRTKAAAGVE-LTTKVLGNVGKGISQYIIAQRA 296 Query: 853 KAQLMTITPALAQAGAGFAAF--------VAQSSTFSTGLASAGPTIAAFNANLMSLSAT 904 L T A + +A + + + SL A Sbjct: 297 AQGLSTSAAAAGLIASAVTLAISPLSFLSIADKFKRANKIEEYSQRFKKLGYDGDSLLAA 356 Query: 905 ----TGVLVASIAGLSAVLSVVSAGFSQIGASATATVGQ-IQAFASSTTVVSSAF--ASM 957 TG + AS+ +S VL+ VS+G S A+ T+ VG + A + T + S AS Sbjct: 357 FHKETGAIDASLTTISTVLASVSSGIS--AAATTSLVGAPVSALVGAVTGIISGILEASK 414 Query: 958 QSMIQ 962 Q+M + Sbjct: 415 QAMFE 419 Score = 30.7 bits (69), Expect = 0.040 Identities = 39/241 (16%), Positives = 90/241 (37%), Gaps = 29/241 (12%) Query: 275 IEAIGKQLDKVD-FSKFASNLGKFLEGINIDKIVSNISSAISSVTSKVKEFWGGFKQTGA 333 ++ + + V+ FS+ + LG L ++ V +K++ Sbjct: 192 VDTVASLNNNVNSFSQQLNTLGSVLSNT----------KHLNGVGNKLQNLPNLDNIGAG 241 Query: 334 ISAFSGALKSVWGAL----KNVASAMSGGSWKNFGS-IVGGIVKHVSNFAKAIADVVGKM 388 + SG L ++ + + + + + ++G + K +S + A G Sbjct: 242 LDTVSGILSAISASFILSNADADTRTKAAAGVELTTKVLGNVGKGISQYIIAQRAAQGLS 301 Query: 389 EPGRLQSWIATFAAVGGGLKLFEKLTGQSVVGSFLDKISTKFGLFGKKAKEGTDQAANGS 448 IA+ + F + + + +++ S +F G +G A Sbjct: 302 TSAAAAGLIASAVTLAISPLSFLSIADKFKRANKIEEYSQRFKKLGY---DGDSLLAAFH 358 Query: 449 RKSGGIISQIFNGLGNIVKSAGTAISTAAKGIGTGIKTALSGAPPIISSLGTAISTVAQG 508 +++G I + + + T +++ + GI T+L GAP +S+L A++ + G Sbjct: 359 KETGAIDAS--------LTTISTVLASVSSGISAAATTSLVGAP--VSALVGAVTGIISG 408 Query: 509 I 509 I Sbjct: 409 I 409
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 27.3 bits (60), Expect = 0.038 Identities = 33/162 (20%), Positives = 62/162 (38%), Gaps = 10/162 (6%) Query: 2 AEETQTVETVEEQVVPEAKQPQ-DEKKYTDA-------DVDAIIDKKFAKWKSEQEAEKS 53 A ++T ETV E E+K + +E+ T+ +A + K +E S Sbjct: 1031 ATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGS 1090 Query: 54 EAKKMAKMNEKEKADYEKQKLLDELQELKNDKTRNELTAVARQMFAESEINVNDDVLGLV 113 E K+ KE A EK++ E + + +Q +E+ + Sbjct: 1091 ETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPAREND 1150 Query: 114 VTLDAE--QTKANVTTLANAFAKVIADDRKALVRQTTPSTGG 153 T++ + Q++ N T AK + + + V ++T G Sbjct: 1151 PTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTG 1192
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 30.9 bits (69), Expect = 0.014 Identities = 51/219 (23%), Positives = 90/219 (41%), Gaps = 17/219 (7%) Query: 50 YQRYADKEK--IDLSEARKRASELDISAYQKKAKELVAKAEK----LRREGKIVTRDDFT 103 YQ + +K +D + ++ + +K+AKE KA+K R+E + R + Sbjct: 122 YQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANLE 181 Query: 104 HQENADMSIYNLAMKTNALELLRLNIDLE---------MQELANGEHKLTKKFLDEGYRK 154 + NA + NL+ N EL++ + E MQE A + L++ + Sbjct: 182 NLTNAMSNPQNLSNNKNLSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQAE 241 Query: 155 ETEFQAGLLGLSVASQASVKSLADAVINANFKGAKWSDNIWDRQDK-LRSIISQSVQSAI 213 E Q +S+ + S KS D I + + W N+ R +K L I + Q Sbjct: 242 EAVRQRAKDKISIKTDKSQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKDN 301 Query: 214 LKGKNGLTIARDIRREFDVSASYAKRLAITEHARVQMEV 252 LT+ + + +VS+ + L E A+ Q E+ Sbjct: 302 FASAY-LTVKLEYPQRHEVSSVIEEELKKREEAKRQREL 339
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 37.4 bits (87), Expect = 1e-04 Identities = 21/81 (25%), Positives = 30/81 (37%), Gaps = 20/81 (24%) Query: 20 ADVLIDGKQIVKIASA-----------IECQEAQVIDASGLIVAPGLVDIHVHFREPGQT 68 AD+ + +I I A I +VI G IV G +D H+HF P Q Sbjct: 86 ADIGLKDGRIAAIGKAGNPDMQPGVTIIVGPGTEVIAGEGKIVTAGGMDSHIHFICPQQ- 144 Query: 69 HKEDIHTGALAAAAGGVTTVV 89 A G+T ++ Sbjct: 145 --------IEEALMSGLTCML 157
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 51.2 bits (122), Expect = 2e-10 Identities = 13/64 (20%), Positives = 30/64 (46%) Query: 5 RQIKKTKTAIYSAFIALLQKKEYSKITVRDMITLANVGRSTFYAHYESKEMLLKELCEEL 64 ++ ++T+ I + L ++ S ++ ++ A V R Y H++ K L E+ E Sbjct: 7 QEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELS 66 Query: 65 FHHL 68 ++ Sbjct: 67 ESNI 70
>LIPPROTEIN48#Mycoplasma P48 major surface lipoprotein signature. Length = 428 Score = 30.4 bits (68), Expect = 0.013 Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 11/122 (9%) Query: 15 KKTSYVTFFLMPILTTLLALSLSFSNNNQAKIGILDKDNSQISKQFIAQLKQNKKYDIFT 74 KK+ + L PI L A+++S NN+++ I +KD S+ + + K ++ Sbjct: 2 KKSKKILLGLSPIAAILPAVAVSCGNNDESNISFKEKDISKYTTTNANGKQVVKNAELLK 61 Query: 75 KIKKEHI--DHYLQDKSL-----EAVLTIDKGFS-DKVLQGKSQKL--NIRSIANSEITE 124 +K I + + DKS EA+ I+K + S S ++ Sbjct: 62 -LKPVLITDEGKIDDKSFNQSAFEALKAINKQTGIEINNVEPSSNFESAYNSALSAGHKI 120 Query: 125 WV 126 WV Sbjct: 121 WV 122
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 30.9 bits (70), Expect = 0.003 Identities = 15/76 (19%), Positives = 32/76 (42%), Gaps = 1/76 (1%) Query: 37 SYQDFLDVLLSLFQFVVIILVLFFYSATINLGEVLTFLTQTSWHWQILCYLVLYLMAIIE 96 S + ++ L S+ + V++ ++++ NL +L T L +L + +I Sbjct: 133 SIKSLVEFLKSILKVVLLSILIWII-IKGNLVTLLQLPTCGIECITPLLGQILRQLMVIC 191 Query: 97 MTLLVLILIFDVLLQK 112 V+I I D + Sbjct: 192 TVGFVVISIADYAFEY 207
>FLGFLGJ#Flagellar protein FlgJ signature. Length = 313 Score = 91.3 bits (226), Expect = 9e-23 Identities = 44/125 (35%), Positives = 63/125 (50%), Gaps = 8/125 (6%) Query: 23 SLTAAQAILESGWGKHA-------PHNALFGIKADSSWTGKSFDTKTQEEYQAGVVTDIV 75 L AQA LESGWG+ P LFG+KA +W G + T E Y+ G + Sbjct: 172 HLILAQAALESGWGQRQIRRENGEPSYNLFGVKASGNWKGPVTEITTTE-YENGEAKKVK 230 Query: 76 DRFRAYDSWDESIADHGQFLVDNPRYEAVIGETDYKKACYAIKAAGYATASSYVELLIQL 135 +FR Y S+ E+++D+ L NPRY AV ++ A++ AGYAT Y L + Sbjct: 231 AKFRVYSSYLEALSDYVGLLTRNPRYAAVTTAASAEQGAQALQDAGYATDPHYARKLTNM 290 Query: 136 IEEND 140 I++ Sbjct: 291 IQQMK 295
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 29.3 bits (65), Expect = 0.048 Identities = 30/157 (19%), Positives = 64/157 (40%), Gaps = 17/157 (10%) Query: 182 QAEIKASAQGLSQKYDDELRKLSAKITTTSSGTTEAYESKLAGLRAEFTR-----SNQGT 236 QA+ KA+ L+Q+ D + + + + TE + A ++AE R + + Sbjct: 80 QAKAKANRDALTQRLKDIVNEALRHNASRTPSATELAHANNAAMQAEDERLRLAKAEEKA 139 Query: 237 RTELESQISGLR----------AVQQSTASQI--SQEIRDREGAVSRVQQSLESYQRRMQ 284 R E E+ + + T Q+ ++ R A+S +++E Q+++ Sbjct: 140 RKEAEAAEKAFQEAEQRRKEIEREKAETERQLKLAEAEEKRLAALSEEAKAVEIAQKKLS 199 Query: 285 DAEENYSSLTHTVRGLQSDVGSPTGKIQSRLTQLAGQ 321 A+ + ++ L S + S + + LAG+ Sbjct: 200 AAQSEVVKMDGEIKTLNSRLSSSIHARDAEMKTLAGK 236
>PF07212#Hyaluronoglucosaminidase Length = 336 Score = 506 bits (1304), Expect = 0.0 Identities = 259/343 (75%), Positives = 287/343 (83%), Gaps = 15/343 (4%) Query: 1 MSENIPLRVQFKRMKAAEWARSDVILLESEIGFETDTGFARAGDGHNRFSDLGYISPLDY 60 M+E IPLRVQFKRM A EW RSDVILLESEIGFETDTG+A+ GDG N+FS L Y+ Sbjct: 1 MTETIPLRVQFKRMTAEEWTRSDVILLESEIGFETDTGYAKFGDGKNQFSKLKYL----- 55 Query: 61 NLLTNKPNIDGLATKVETAQKLQQ----KADKETVYTKAESKQELDKKLNLKGGVMTGQL 116 NKP++ A K ET K+ + KADK VY KAESK ELDKKLNLKGGVMTGQL Sbjct: 56 ----NKPDLGAFAQKEETNSKITKLESSKADKNAVYLKAESKIELDKKLNLKGGVMTGQL 111 Query: 117 KFKPAAT-VAYSSSTGGAVNIDLSSTRGAGVVVYSDNDTSDGPLMSLRTGKETFNQSALF 175 +FKP + + SSS GGA+NID+S + GAGVVVYS+NDTSDGPLMSLRTGKETFNQSALF Sbjct: 112 QFKPNKSGIKPSSSVGGAINIDMSKSEGAGVVVYSNNDTSDGPLMSLRTGKETFNQSALF 171 Query: 176 VDYKGTTNAVNIAMRQPTTPNFSSALNITSGNENGSAMQLRGSEKALGTLKITHENPSIG 235 VDY G TNAVNIAMRQPTTPNFSSALNITSGNENGSAMQ+RG EKALGTLKITHENP++ Sbjct: 172 VDYSGKTNAVNIAMRQPTTPNFSSALNITSGNENGSAMQIRGVEKALGTLKITHENPNVE 231 Query: 236 ADYDKNAAALSIDIVKKTNGA-GTAAQGIYINSTSGTTGKLLRIRNLSDDKFYVKSDGGF 294 A+YD+NAAALSIDIVKK G GTAAQGIYINSTSGTTGKLLRIRNL DDKFYVK DGGF Sbjct: 232 ANYDENAAALSIDIVKKQKGGKGTAAQGIYINSTSGTTGKLLRIRNLGDDKFYVKHDGGF 291 Query: 295 YAKETSQIDGNLKLKDPTANDHAATKAYVDKAISELKKLILKK 337 YAK+TSQIDGNLKLK+PTA+DHAATKAYVD + +LK L++ K Sbjct: 292 YAKKTSQIDGNLKLKNPTADDHAATKAYVDSEVKKLKALLMDK 334
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 49.3 bits (117), Expect = 7e-08 Identities = 49/287 (17%), Positives = 98/287 (34%), Gaps = 29/287 (10%) Query: 454 LTKESDETKKLKKEQEGLVESNKQLRDSVREGVQERKKGLESVKESTAAHQKLADEIIKL 513 T +S + K L+ E+ L L + + + +A + L E L Sbjct: 136 STADSAKIKTLEAEKAALAARKADLE-------KALEGAMNFSTADSAKIKTLEAEKAAL 188 Query: 514 AAKENKTAGEKQNLKNKIDQLNGSIDGLNLAYDKNSNSLSHNADQIKSRISAMEAESTWQ 573 A++ + + N + I L + + ++ + S Sbjct: 189 EARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKA----DLEKALEGAMNFS--- 241 Query: 574 TAQQNLLNIEQKRSEVSKKLAENAELRKKWNEEANVSDSVRKEKIAELTEEEGKLKNMQT 633 + I+ +E + A AEL K E A + KI L E+ L+ + Sbjct: 242 --TADSAKIKTLEAEKAALEARQAELEKA-LEGAMNFSTADSAKIKTLEAEKAALEAEKA 298 Query: 634 QLQEEYNKTSATQQAAADAMAAAEESGSARQVIAYENMSEAQRTAIDNMRTKYSELLETT 693 L+ + +A +Q+ + A+ E + +Q+ A E Q + R L+ + Sbjct: 299 DLEHQSQVLNANRQSLRRDLDASRE--AKKQLEAEHQKLEEQNKISEASRQSLRRDLDAS 356 Query: 694 TSIFDAIE----------QKTALSVEQMNANLEKNRAATEQWATNLE 730 +E + + S + + +L+ +R A +Q LE Sbjct: 357 REAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQVEKALE 403
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 33.0 bits (75), Expect = 0.001 Identities = 22/107 (20%), Positives = 27/107 (25%), Gaps = 8/107 (7%) Query: 233 VIAHLFAQVPTQPVP-----QTPPVQETPASQTAHESVHEQAEKAPEQPPMQPTSAPVAY 287 H ++P P P E P + + E PE P P APV Sbjct: 35 TSVHQVIELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVI 94 Query: 288 PPSMPKALTDLMSA---EQVTPDELVAVANIRGHFPPMTPIENFPSD 331 PK EQ D + F P S Sbjct: 95 EKPKPKPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSST 141
>TYPE3OMGPROT#Type III secretion system outer membrane G protein family signature. Length = 607 Score = 25.2 bits (55), Expect = 0.030 Identities = 9/24 (37%), Positives = 16/24 (66%) Query: 6 KRLKAERIASGMTQCEVAQSMGWK 29 K L +S +TQC++ +S+GW+ Sbjct: 562 KWLSQNNKSSYLTQCKMDKSLGWR 585
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 38.3 bits (89), Expect = 4e-05 Identities = 28/141 (19%), Positives = 59/141 (41%), Gaps = 13/141 (9%) Query: 52 SVIGVLFNLFGGVIADSFKR----KKIIITTNILCGTACLVLSFLTKEQWLVYAIVLTNV 107 + G+L +L +I ++ ++ I GT ++L+F T W+ + I+ V Sbjct: 253 AAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFAT-RGWMAFPIM---V 308 Query: 108 ILAFMSAFSSPSYKAFTKEIVKKDSISQLNSLLETTSTVIKVTVPMVAIFLYKLLGIHGV 167 +LA P+ +A V ++ QL L +++ + P++ +Y + Sbjct: 309 LLAS-GGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYA----ASI 363 Query: 168 LLLDGLSFLIAALLISFILPV 188 +G +++ A L LP Sbjct: 364 TTWNGWAWIAGAALYLLCLPA 384
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 47.4 bits (112), Expect = 3e-07 Identities = 48/313 (15%), Positives = 94/313 (30%), Gaps = 10/313 (3%) Query: 209 AKVAKQFLELDANRKQLQLDILVKDIDIAQERQTKDTEALAALQQDLASYYAKRQSMEED 268 + VA + + Q + D + + + + + + AL+ + + +E Sbjct: 41 SAVATRSQTDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEK 100 Query: 269 YQKFKQKKQVLSQESDQTQTTLLELTKLIADLEKQIELVKLESGQ---EAEKKAEAKKHL 325 +K + + + + + +L K + + E A K L Sbjct: 101 LRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADL 160 Query: 326 EQLQEQLDGFQAEEKQCTEQLLHIDQQLCDVKQQLNELSNALERFSSDPDQLMETLREEF 385 E+ E F + + L L + +L + FS+ ++TL E Sbjct: 161 EKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEK 220 Query: 386 VLLMQKEAALSNQLTALKAHLDKEKQARQHKAQEYQLLVTKLDQLNDESQKAQAHYKAQK 445 L ++A L L + + E L + +L + A A Sbjct: 221 AALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADS 280 Query: 446 EQVEMLLQNYQEGDKRVQELERDYQLNQERLFDLLDQ-------KKGKEARKASLESIQK 498 +++ L + +LE Q+ L KK EA LE K Sbjct: 281 AKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNK 340 Query: 499 SHSQFYAGVRAVL 511 +R L Sbjct: 341 ISEASRQSLRRDL 353 Score = 30.8 bits (69), Expect = 0.034 Identities = 38/243 (15%), Positives = 88/243 (36%), Gaps = 18/243 (7%) Query: 169 KYKTRKKETQIKLNQTQDNLDRLEDIIYELDTQLAPLEKQAKVAKQFLELDANRKQLQLD 228 + + + LE L+ + A LEK + A F ++ Sbjct: 229 DLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTA----DSAKIK 284 Query: 229 ILVKDIDIAQERQTKDTEALAALQ-------QDLASYYAKRQSMEEDYQKFKQKKQVLSQ 281 L + + + L +DL + ++ +E ++QK +++ ++ Sbjct: 285 TLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEA 344 Query: 282 ESDQTQTTLLELTKLIADLEKQIELVKLESGQEAEKKAEAKKHLEQLQEQLDGFQAEEKQ 341 + L + LE + + ++ E+ ++ + L+ LD + +KQ Sbjct: 345 SRQSLRRDLDASREAKKQLEAEHQKLE-------EQNKISEASRQSLRRDLDASREAKKQ 397 Query: 342 CTEQLLHIDQQLCDVKQQLNELSNALERFSSDPDQLMETLREEFVLLMQKEAALSNQLTA 401 + L + +L +++ EL + + + +L L E L +K A + +L Sbjct: 398 VEKALEEANSKLAALEKLNKELEESKKLTEKEKAELQAKLEAEAKALKEKLAKQAEELAK 457 Query: 402 LKA 404 L+A Sbjct: 458 LRA 460 Score = 30.4 bits (68), Expect = 0.044 Identities = 30/163 (18%), Positives = 54/163 (33%), Gaps = 8/163 (4%) Query: 676 ELEQISEELTRLVEQLKITEKEVAALQSDLIAKKEELTQLKLAGDQARLAEQRAQMAYQQ 735 LE L L+ + + AK + L K A E R + Sbjct: 145 TLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAA------LEARQAELEKA 198 Query: 736 LQEKQEDSKALLAALDQSQTTHSDESLLAEQARIEEALTAIAKKKNALTCDIDDIKENKD 795 L+ S A A + + +L A +A +E+AL A + I ++ K Sbjct: 199 LEGAMNFSTADSAKIKTLE--AEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKA 256 Query: 796 LIRQKTQNIHQALSQARLQERDLLNEKKFEQANQSRLRTQLKQ 838 + + + +AL A + K +A ++ L + Sbjct: 257 ALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKAD 299
>PF06580#Sensor histidine kinase Length = 349 Score = 44.1 bits (104), Expect = 7e-07 Identities = 30/187 (16%), Positives = 72/187 (38%), Gaps = 34/187 (18%) Query: 253 DETNRMMRMISDLL--NLSRIDNQVTQLAVEMTNFTAFITSILNRFDLVKNQHTGTGKVY 310 + M+ +S+L+ +L + + LA E+T +++ +F +++ ++ Sbjct: 191 TKAREMLTSLSELMRYSLRYSNARQVSLADELTVVDSYLQLASIQF---EDRLQFENQIN 247 Query: 311 EIVRDYPITSVWIEIDNDKMTQVIENILNNAIKYSPDGGKITVRMKTTDTQLIISISDQG 370 + D + + ++ ++EN + + I P GGKI ++ + + + + + G Sbjct: 248 PAIMDVQVPPMLVQT-------LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTG 300 Query: 371 LGIPKTDLPLIFDRFYRVDKARSRAQGGTGLGLAIAKEIIKQHHGF---IWAKSDYGKGS 427 K + TG GL +E ++ +G I GK Sbjct: 301 SLALKNT------------------KESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKV- 341 Query: 428 TFTIVLP 434 +++P Sbjct: 342 NAMVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 91.8 bits (228), Expect = 1e-23 Identities = 29/133 (21%), Positives = 65/133 (48%), Gaps = 1/133 (0%) Query: 3 KILIVDDEKPISDIIKFNLTKEGYDIVTAFDGREAVTIFEEEKPDLIILDLMLPELDGLE 62 IL+ DD+ I ++ L++ GYD+ + DL++ D+++P+ + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 63 VAKEIRKT-SHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTET 121 + I+K +P++++SA+++ + E GA DY+ KPF EL+ + L + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 122 IETAVAEENASSG 134 + + +++ Sbjct: 125 RPSKLEDDSQDGM 137
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 41.4 bits (97), Expect = 5e-06 Identities = 32/153 (20%), Positives = 56/153 (36%), Gaps = 9/153 (5%) Query: 17 LRRQKVVF---FVAFFGYVCAYLVRNNFKLMSNTIMVQNGWDKAQIAILLSCLTVSYGLA 73 LR +++ ++FF + ++ + ++N LT S G A Sbjct: 10 LRHNQILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPA--STNWVNTAFMLTFSIGTA 67 Query: 74 KFYMGALGDRVSLRKLFSISLGASALICILIGFFNSSMVVLGILLVLCGVVQGALAPA-S 132 G L D++ +++L + + + IGF S L I+ A PA Sbjct: 68 --VYGKLSDQLGIKRLLLFGIIINCFGSV-IGFVGHSFFSLLIMARFIQGAGAAAFPALV 124 Query: 133 QAMIANYFPNKTRGGAIAGWNISQNMGSALLPL 165 ++A Y P + RG A MG + P Sbjct: 125 MVVVARYIPKENRGKAFGLIGSIVAMGEGVGPA 157
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 99.7 bits (248), Expect = 1e-27 Identities = 68/252 (26%), Positives = 109/252 (43%), Gaps = 24/252 (9%) Query: 3 KVVLVTGCASGIGYAQARYFLKQGHHVYGVDKSDKPDLSGNFHFIKLDLSSELAPL---- 58 K+ +TG A GIG A AR QG H+ VD + + +E P Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 59 -----------FKVVPSVDILCNTAGILDAYKPLLDVSDEEVEHLFDINFFATVKLTRHY 107 + + +DIL N AG+L + +SDEE E F +N +R Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRP-GLIHSLSDEEWEATFSVNSTGVFNASRSV 127 Query: 108 LRRMVEKQSGVIINMCSIASFIAGGGGVAYTSSKHALAGFTRQLALDYAKDQIHIFGIAP 167 + M++++SG I+ + S + + AY SSK A FT+ L L+ A+ I ++P Sbjct: 128 SKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSP 187 Query: 168 GAVKTAM-----TANDFEP---GGLADWVARETPIGRWTKPDEVAELTGFLASGKARSMQ 219 G+ +T M + G + P+ + KP ++A+ FL SG+A + Sbjct: 188 GSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHIT 247 Query: 220 GEIVKIDGGWTL 231 + +DGG TL Sbjct: 248 MHNLCVDGGATL 259
>BACTRLTOXIN#Bacterial toxin signature. Length = 266 Score = 98.5 bits (245), Expect = 5e-27 Identities = 55/216 (25%), Positives = 96/216 (44%), Gaps = 20/216 (9%) Query: 35 LNYAYEIIPVDYTNC-NIDYLTTHDFYIDISSYKKKNF-SVDSEVESYITTKFTKNQKVN 92 + Y Y+ V T ++D HD +IS K KN+ V +E+ + K K++ V+ Sbjct: 51 MKYLYDDHYVSATKVKSVDKFLAHDLIYNISDKKLKNYDKVKTELLNEDLAKKYKDEVVD 110 Query: 93 IFGLPYIFTRYDVYY------------IYGGVTPSVNSNSENSKIVGNLLID--GVQQKT 138 ++G Y Y +YGG+T N ++ + N+L+ ++ T Sbjct: 111 VYGSNYYVNCYFSSKDNVGKVTGGKTCMYGGITKHEG-NHFDNGNLQNVLVRVYENKRNT 169 Query: 139 LINPIKIDKPIFTIQEFDFKIRQYLMQTYKIYDPN-SPYIKGQLEIAINGNKHESFNLYD 197 + ++ DK T QE D K R +L+ +Y+ N SPY G ++ N +++ Sbjct: 170 ISFEVQTDKKSVTAQELDIKARNFLINKKNLYEFNSSPYETGYIKFIENNGNTFWYDMMP 229 Query: 198 ATSS-STRSDIFKKYKDNKTINMKDFSHFDIYLWTK 232 A +S Y DNKT++ K +++L TK Sbjct: 230 APGDKFDQSKYLMMYNDNKTVDSKS-VKIEVHLTTK 264
>BINARYTOXINA#Clostridial binary toxin A signature. Length = 454 Score = 38.5 bits (89), Expect = 2e-05 Identities = 42/170 (24%), Positives = 70/170 (41%), Gaps = 27/170 (15%) Query: 88 INTSLDKAKGELSQLTPELRDQVAQLDAATHRLVIPWNIVVYRYVYETFLRDIGVSHADL 147 IN L + G L+ PEL +V ++ A IP N++VYR G L Sbjct: 295 INNYL-ISNGPLNNPNPELDSKVNNIENALKLTPIPSNLIVYRRS--------GPQEFGL 345 Query: 148 TSYYRNHQFDPHILCKIK---------LGTRYTKHSFMSTT--ALKNGAMTHRPVEVRIC 196 T + F+ KI+ G T +F+ST+ ++ A R + +RI Sbjct: 346 TLTSPEYDFN-----KIENIDAFKEKWEGKVITYPNFISTSIGSVNMSAFAKRKIILRIN 400 Query: 197 VKKGAKAAFVEPYSAVPSEVELLFPRGCQLEV--VGAYVSQDQKKLHIEA 244 + K + A++ E E+L G + ++ V +Y KL ++A Sbjct: 401 IPKDSPGAYLSAIPGYAGEYEVLLNHGSKFKINKVDSYKDGTVTKLILDA 450
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 46.3 bits (110), Expect = 2e-07 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 6/53 (11%) Query: 46 IAIKDGLIVALG-SGEPDAE-----LVGTQTIMRSYKGKIATPGIIDCHTHLV 92 I +KDG I A+G +G PD + +VG T + + +GKI T G +D H H + Sbjct: 88 IGLKDGRIAAIGKAGNPDMQPGVTIIVGPGTEVIAGEGKIVTAGGMDSHIHFI 140
>PF07212#Hyaluronoglucosaminidase Length = 336 Score = 30.0 bits (67), Expect = 0.021 Identities = 34/145 (23%), Positives = 58/145 (40%), Gaps = 22/145 (15%) Query: 242 GGQVMETVGIENMIGTLYT--EGPKLMAEVEAHTKSYDVDIIKAQLATSIEKKENIEVTL 299 G M+ G+E +GTL E P + A + + + +DI+K K++ + T Sbjct: 205 NGSAMQIRGVEKALGTLKITHENPNVEANYDENAAALSIDIVK--------KQKGGKGTA 256 Query: 300 ANGAVLQAKTAILALGAKWRNINVPGEDEFRNKGVTYCPHCDGPLFEGKDVAVIGGGNSG 359 A G + + + + RN+ +D+F K DG + K + GN Sbjct: 257 AQGIYINSTSGTTGKLLRIRNLG---DDKFYVKH-------DGGFYAKKTSQI--DGNLK 304 Query: 360 LEAALDLAGLAKHVYVLEFLPELKA 384 L+ A YV + +LKA Sbjct: 305 LKNPTADDHAATKAYVDSEVKKLKA 329
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 36.0 bits (83), Expect = 6e-04 Identities = 37/202 (18%), Positives = 66/202 (32%), Gaps = 34/202 (16%) Query: 476 PTPVTEDDILATLSKLSGIPLEKLTQADSKKYLNLEKELHKRVIGQDAAVTAISRAIRRN 535 P P +++ + + P + ++ + + ++G+ AA+ I R + R Sbjct: 103 PKPFDLTELIGIIGRALAEPKRRPSKLEDDSQDGMP------LVGRSAAMQEIYRVLAR- 155 Query: 536 QSGIRTGKRPIGSFMFLGPTGVGKTELAKALAEVLFDDEAALIRFDMSEYMEKFAASRLN 595 + + M G +G GK +A+AL + + +M+ S L Sbjct: 156 ---LMQTDLTL---MITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELF 209 Query: 596 GAPPGYVGYDEGGELTQKVRNKPYSV-------LLFDEVEKAHPDIFNVLLQVLDDGILT 648 G E G T L DE+ D LL+VL G T Sbjct: 210 GH--------EKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYT 261 Query: 649 ---DSRGRKVDFSNTIIIMTSN 667 + D I+ +N Sbjct: 262 TVGGRTPIRSDVR---IVAATN 280
>SUBTILISIN#Subtilisin serine protease family (S8) signature. Length = 326 Score = 106 bits (266), Expect = 5e-27 Identities = 50/226 (22%), Positives = 85/226 (37%), Gaps = 47/226 (20%) Query: 117 KAGKGAGTVVAVIDAGFDKNHEAWRLTDKTKARYQSKEDLEKAKKEHGITYGEWVNDKVA 176 +G G VAV+D G D +H DL KA+ G + + Sbjct: 36 NQTRGRGVKVAVLDTGCDADHP----------------DL-KARIIGGRNFTDDDEGDPE 78 Query: 177 YYHDYSKDGKTAVDQEHGTHVSGILSGNAPSETKEPYRLEGAMPEAQLLLMRVEIVNGLA 236 + DY+ HGTHV+G ++ + G PEA LL+++V G Sbjct: 79 IFKDYNG---------HGTHVAGTIAATENE-----NGVVGVAPEADLLIIKVLNKQGSG 124 Query: 237 DYARNYAQAIIDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGND 296 Y Q I A+ +I+MS G E +A A + + ++ +AGN+ Sbjct: 125 QYD-WIIQGIYYAIEQKVDIISMSLGGPED-----VPELHEAVKKAVASQILVMCAAGNE 178 Query: 297 SSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETAT 342 +T +G P + ++V + + D+ +E + Sbjct: 179 GDGDDRT----------DELGYPGCYNEVISVGAINFDRHASEFSN 214 Score = 80.3 bits (198), Expect = 4e-18 Identities = 37/139 (26%), Positives = 58/139 (41%), Gaps = 22/139 (15%) Query: 457 NATPKVLPTASGTK---LSRFSSWGLTADGNIKPDIAAPGQDILSSVANNKYAKLSGTSM 513 +V+ + S FS+ + D+ APG+DILS+V KYA SGTSM Sbjct: 192 GCYNEVISVGAINFDRHASEFSNSNN------EVDLVAPGEDILSTVPGGKYATFSGTSM 245 Query: 514 SAPLVAGIMGL-LQKQYETQYPDMTPSERLDLAKKVLMSSATALYDEDEKAYFSPRQQGA 572 + P VAG + L Q + D+T E L+ L + SP+ +G Sbjct: 246 ATPHVAGALALIKQLANASFERDLTEPE----LYAQLIKRTIPLGN-------SPKMEGN 294 Query: 573 GAVDAKKASA-ATMYVTDK 590 G + + ++ T + Sbjct: 295 GLLYLTAVEELSRIFDTQR 313
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 55.5 bits (133), Expect = 2e-10 Identities = 52/304 (17%), Positives = 103/304 (33%), Gaps = 23/304 (7%) Query: 44 ISLTQKTTATTSENWHHIDKDGLIPLGISLEAAKEEFKKEVEESRLSEAQKETYKQKIKT 103 I + + +E +D+ + P + + E E + +K T Sbjct: 1003 IQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETT 1062 Query: 104 APDKDKLLFTYHSEYMTAVKDLPASTESTTQPVEA-PVQETQASASDSMVTGDSTSVTTD 162 A +++ E + VK + E E Q T+ + ++ + V T+ Sbjct: 1063 AQNREVA-----KEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETE 1117 Query: 163 SPEETPSSESPVAPALSEA-----PAQPAESEEPSVAASSEETPSPSTPAAPETPEEPAA 217 +E P S V+P ++ A+PA +P+V ++ + +T + +E ++ Sbjct: 1118 KTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSS 1177 Query: 218 PSPSPESEEPSVAAPSEETPS-PETPE-EPAAPSQPAESEESSVAATTSPSPSTPAESET 275 P +E S E PE A +QP + ESS S + Sbjct: 1178 NVEQPVTES----TTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHN 1233 Query: 276 QTPPAVTKDSDKPSSAAEKPAASSLVSEQTVQQPTSKRSSDKKEEQEQSYSPNRSLSRQV 335 P + S+ A L S T + R+ + + ++ +S+ Sbjct: 1234 VEPATTS------SNDRSTVALCDLTSTNTNAVLSDARAKAQFVALNVGKAVSQHISQLE 1287 Query: 336 RAHE 339 +E Sbjct: 1288 MNNE 1291 Score = 41.6 bits (97), Expect = 5e-06 Identities = 20/119 (16%), Positives = 37/119 (31%) Query: 206 PAAPETPEEPAAPSPSPESEEPSVAAPSEETPSPETPEEPAAPSQPAESEESSVAATTSP 265 TP A PS S +A E P P P+ ++ + T Sbjct: 994 TTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEK 1053 Query: 266 SPSTPAESETQTPPAVTKDSDKPSSAAEKPAASSLVSEQTVQQPTSKRSSDKKEEQEQS 324 + E+ Q + + + + SE Q T + + E++E++ Sbjct: 1054 NEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKA 1112 Score = 39.3 bits (91), Expect = 3e-05 Identities = 21/109 (19%), Positives = 43/109 (39%), Gaps = 4/109 (3%) Query: 219 SPSPESEEPSVAAPSEETPSPETPEEPAAPSQPAESEESSVAATTSPSPSTPAESE---T 275 +P E +V + TP+ + P+ PS E A P+P+TP+E+ Sbjct: 982 NPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVA 1041 Query: 276 QTPPAVTKDSDKPSS-AAEKPAASSLVSEQTVQQPTSKRSSDKKEEQEQ 323 + +K +K A E A + V+++ + +++ + Sbjct: 1042 ENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGS 1090 Score = 38.9 bits (90), Expect = 4e-05 Identities = 26/179 (14%), Positives = 58/179 (32%), Gaps = 2/179 (1%) Query: 163 SPEETPSSESPVAPALSEAPAQPAESEEPSVAASSEETPSPSTPAAPETPEEPAAPSPSP 222 + TP++ P++ + A +E V + TPS +T E ++ + Sbjct: 995 TNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKN 1054 Query: 223 ESEEPSVAAPSEETPSPETPEEPAAPSQP--AESEESSVAATTSPSPSTPAESETQTPPA 280 E + A + E A A+S + T+ + T + + Sbjct: 1055 EQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKV 1114 Query: 281 VTKDSDKPSSAAEKPAASSLVSEQTVQQPTSKRSSDKKEEQEQSYSPNRSLSRQVRAHE 339 T+ + + + + SE Q R +D ++ S + + + + Sbjct: 1115 ETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAK 1173
>ADHESNFAMILY#Adhesin family signature. Length = 309 Score = 250 bits (640), Expect = 2e-84 Identities = 83/323 (25%), Positives = 144/323 (44%), Gaps = 34/323 (10%) Query: 1 MKKGFFLMAMVVSLVMIAGCDKSANPKQPTQGMSVVTSFYPMYAMTKEVSGDLNDVR-MI 59 MKK L+ + +S +++ C Q + VV + + +TK ++GD D+ ++ Sbjct: 1 MKKLGTLLVLFLSAIILVACASGKKDTTSGQKLKVVATNSIIADITKNIAGDKIDLHSIV 60 Query: 60 QSGAGIHSFEPSVNDVAAIYDADLFVYHSHTLE----AWARDLDPNLKKSKVDVFEASKP 115 G H +EP DV +ADL Y+ LE AW L N KK++ + A Sbjct: 61 PIGQDPHEYEPLPEDVKKTSEADLIFYNGINLETGGNAWFTKLVENAKKTENKDYFA--- 117 Query: 116 LTLDRVKGLEDMEVTQGIDPATLY--------DPHTWTDPVLAGEEAVNIAKELGRLDPK 167 V+ G+D L DPH W + A NIAK+L DP Sbjct: 118 -------------VSDGVDVIYLEGQNEKGKEDPHAWLNLENGIIFAKNIAKQLSAKDPN 164 Query: 168 HKDSYTKNAKAFKKEAEQLTEEYTQKFKKVR--SKTFVTQHTAFSYLAKRFGLKQLGISG 225 +K+ Y KN K + + ++L +E KF K+ K VT AF Y +K +G+ I Sbjct: 165 NKEFYEKNLKEYTDKLDKLDKESKDKFNKIPAEKKLIVTSEGAFKYFSKAYGVPSAYIWE 224 Query: 226 ISPEQEPSPRQLKEIQDFVKEYNVKTIFAEDNVNPKIAHAIAKSTGAKVKT---LSPLEA 282 I+ E+E +P Q+K + + +++ V ++F E +V+ + +++ T + + Sbjct: 225 INTEEEGTPEQIKTLVEKLRQTKVPSLFVESSVDDRPMKTVSQDTNIPIYAQIFTDSIAE 284 Query: 283 APSGNKTYLENLRANLEVLYQQL 305 +Y ++ NL+ + + L Sbjct: 285 QGKEGDSYYSMMKYNLDKIAEGL 307
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 37.4 bits (86), Expect = 2e-04 Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 2/88 (2%) Query: 226 IPKKDLSPSELAAAQAYWSQKQGRGARPSDYRPTPAPAPGRRKAPIPDVTPNPGQGHQPD 285 IP+ DL+P A A + P++ P P PG R P PD NP D Sbjct: 310 IPRPDLTPGSAEAPNAQPLPEVSPAENPAN-NPAPNENPGTRPNPEPDPDLNPDANPDTD 368 Query: 286 -NGGYHPAPPRPNDASQNKHQRDEFKGK 312 G P P D +H+++ +G+ Sbjct: 369 GQPGTRPDSPAVPDRPNGRHRKERKEGE 396
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 29.0 bits (65), Expect = 0.022 Identities = 9/16 (56%), Positives = 12/16 (75%) Query: 45 IIGASGSGKSLLAHAI 60 I G SG+GK L+A A+ Sbjct: 165 ITGESGTGKELVARAL 180
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 28.9 bits (64), Expect = 0.035 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Query: 7 IIIGGGPAGMMAAISSSYYGYKTLLIEKNRRLGKKLAGTGGGRCNVTNSGNLDVLM 62 + +G PAG+ ++Y K + + LG +LA RCN+ + G+ + M Sbjct: 140 VTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEY-NIRCNIVSPGSTETDM 194
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.8 bits (69), Expect = 0.003 Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 10/102 (9%) Query: 84 EETKQRELLEILVDEKNTEITRLYEQLKAKDAQLASKDEQMRVKDVQIAEKDKQLDQQQQ 143 E ++E + +E++ T + AK+A+ K + Q E + + Sbjct: 1041 AENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKA------NTQTNEVAQS--GSET 1092 Query: 144 LTAKAMADKETLKLELEE-AKAEANQARLQVEEVQAEVGPKK 184 + KET +E EE AK E + + +V +V ++V PK+ Sbjct: 1093 KETQTTETKETATVEKEEKAKVETEKTQ-EVPKVTSQVSPKQ 1133
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 28.3 bits (63), Expect = 0.032 Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 1/57 (1%) Query: 131 KNQKAWKKLQWKMGISIFLAIVSY-VGLILLSSYLQKFWLVYVAMGLFLPGFSWLVI 186 + Q+ ++Q M L +V+ V ILLS + K ++ M LP + +++ Sbjct: 161 QRQQMRSRIQQAMIYPCVLTVVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLM 217
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 27.1 bits (59), Expect = 0.014 Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 7/85 (8%) Query: 9 KQAQKLQKQMEQKQADLAAMQFTGKSAQDLVTA-----TFTGDKKLVGIDFKEAVVDPED 63 +QAQK QK +K+ + A + ++L A + +K L + ++ + + Sbjct: 156 EQAQKAQKDKREKRKEERAKNRA--NLENLTNAMSNPQNLSNNKNLSELIKQQRENELDQ 213 Query: 64 VETLQDMTTQAINDALTQIDETTKK 88 +E L+DM QA +AL QI+E KK Sbjct: 214 MERLEDMQEQAQANALKQIEELNKK 238
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 51.8 bits (124), Expect = 3e-09 Identities = 67/411 (16%), Positives = 148/411 (36%), Gaps = 46/411 (11%) Query: 30 SSFSMEEKLFNKHFVAITVINFIVYMVYYLFTVIIAFVATRELGAQTSQAGLATGIYILG 89 +S+S N+ + + +++F + + V + +A + + ++L Sbjct: 3 TSYSQSNLRHNQILIWLCILSFFSVLNEMVLNVSLPDIAN-DFNKPPASTNWVNTAFMLT 61 Query: 90 TLLARLIFGKQLEVFG-RRLVLRGGAIFYLLTTLAYFYMPTISMMYLVRFLNGFGYGVVS 148 + ++GK + G +RL+L G I + + + S++ + RF+ G G Sbjct: 62 FSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFP 121 Query: 149 TATNTIVTAYIPARKRGEGINFYGLSTSLAAAIGPFVGTFMLDNLHIDFRMI-------- 200 +V YIP RG+ G ++ +GP +G + +H + ++ Sbjct: 122 ALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIIT 181 Query: 201 ----------------------IVLCSVLIGCVVVGAFAFPVKNMSLNAEQL---AKTKS 235 I+L SV I ++ ++ + + ++ K Sbjct: 182 VPFLMKLLKKEVRIKGHFDIKGIILMSVGIVFFMLFTTSYSISFLIVSVLSFLIFVKHIR 241 Query: 236 WTVDSFIEK---KALFITAIAFLMGIAYASVLGFQKLYTSEI----HLTT--VGAYFFVV 286 D F++ K + GI + +V GF + + L+T +G+ Sbjct: 242 KVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFP 301 Query: 287 YALIITITRPAMGRLMDAKGDKWVLYPSYLFLAMGLFLLGSVSSGGSYLLSGALIG-FGY 345 + + I G L+D +G +VL FL++ + S+ ++ ++ G Sbjct: 302 GTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGG 361 Query: 346 GTFMSCGQAASI-QGVDEHRFNTAMSTYMIGLDLGLGAGPYLLGLIKDLAL 395 +F + + + + MS L G G ++G + + L Sbjct: 362 LSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSIPL 412 Score = 34.1 bits (78), Expect = 0.001 Identities = 35/196 (17%), Positives = 76/196 (38%), Gaps = 12/196 (6%) Query: 12 LKYIIFCFFCKMFMKIERSSFSMEEKLF-NKHFVAITVINFIVYMVYYLFTVIIAFVATR 70 + + F F K K+ L N F+ + I++ F ++ ++ Sbjct: 228 VSVLSFLIFVKHIRKVTDPFVDPG--LGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKD 285 Query: 71 ELGAQTSQAGLATGIYILGTLLARLIF----GKQLEVFGRRLVLRGGAIFYLLT--TLAY 124 T++ G + I ++ +IF G ++ G VL G F ++ T ++ Sbjct: 286 VHQLSTAEIG---SVIIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASF 342 Query: 125 FYMPTISMMYLVRFLNGFGYGVVSTATNTIVTAYIPARKRGEGINFYGLSTSLAAAIGPF 184 T M ++ G T +TIV++ + ++ G G++ ++ L+ G Sbjct: 343 LLETTSWFMTIIIVFVLGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIA 402 Query: 185 VGTFMLDNLHIDFRMI 200 + +L +D R++ Sbjct: 403 IVGGLLSIPLLDQRLL 418
>SECA#SecA protein signature. Length = 901 Score = 1053 bits (2725), Expect = 0.0 Identities = 394/903 (43%), Positives = 560/903 (62%), Gaps = 73/903 (8%) Query: 1 MANILRKVIENDKG-ELRKLEKIAKKVESYADQMASLSDRDLQGKTLEFKERYQKGETLE 59 + +L KV + LR++ K+ + + +M LSD +L+GKT EF+ R +KGE LE Sbjct: 2 LIKLLTKVFGSRNDRTLRRMRKVVNIINAMEPEMEKLSDEELKGKTAEFRARLEKGEVLE 61 Query: 60 QLLPEAFAVVREAAKRVLGLFPYRVQIMGGIVLHNGDVPEMRTGEGKTLTATMPVYLNAI 119 L+PEAFAVVREA+KRV G+ + VQ++GG+VL+ + EMRTGEGKTLTAT+P YLNA+ Sbjct: 62 NLIPEAFAVVREASKRVFGMRHFDVQLLGGMVLNERCIAEMRTGEGKTLTATLPAYLNAL 121 Query: 120 AGEGVHVITVNEYLSTRDATEMGEVYSWLGLSVGINLAAKSPAEKREAYNCDITYSTNSE 179 G+GVHV+TVN+YL+ RDA ++ +LGL+VGINL KREAY DITY TN+E Sbjct: 122 TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAYAADITYGTNNE 181 Query: 180 VGFDYLRDNMVVRQEDMVQRPLNFALVDEVDSVLIDEARTPLIVSGAVSSETNQLYIRAD 239 GFDYLRDNM E+ VQR L++ALVDEVDS+LIDEARTPLI+SG + ++Y R + Sbjct: 182 YGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSS-EMYKRVN 240 Query: 240 MFVKTLT------------SVDYVIDVPTKTIGLSDSGIDKAESYFNLS-------NLYD 280 + L + +D ++ + L++ G+ E +LY Sbjct: 241 KIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYS 300 Query: 281 IENVALTHFIDNALRANYIMLLDIDYVVSEDGEILIVDQFTGRTMEGRRFSDGLHQAIEA 340 N+ L H + ALRA+ + D+DY+V +DGE++IVD+ TGRTM+GRR+SDGLHQA+EA Sbjct: 301 PANIMLMHHVTAALRAHALFTRDVDYIV-KDGEVIIVDEHTGRTMQGRRWSDGLHQAVEA 359 Query: 341 KEGVRIQEESKTSASITYQNMFRMYKKLAGMTGTAKTEEEEFREVYNMRIIPIPTNRPIA 400 KEGV+IQ E++T ASIT+QN FR+Y+KLAGMTGTA TE EF +Y + + +PTNRP+ Sbjct: 360 KEGVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMI 419 Query: 401 RIDHTDLLYPTLESKFRAVVEDVKTRHAKGQPILVGTVAVETSDLISRKLVEAGIPHEVL 460 R D DL+Y T K +A++ED+K R AKGQP+LVGT+++E S+L+S +L +AGI H VL Sbjct: 420 RKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVL 479 Query: 461 NAKNHFKEAQIIMNAGQRGAVTIATNMAGRGTDIKLG----------------------- 497 NAK H EA I+ AG AVTIATNMAGRGTDI LG Sbjct: 480 NAKFHANEAAIVAQAGYPAAVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKA 539 Query: 498 ------EGVRELGGLCVIGTERHESRRIDNQLRGRSGRQGDPGESQFYLSLEDDLMRRFG 551 + V E GGL +IGTERHESRRIDNQLRGRSGRQGD G S+FYLS+ED LMR F Sbjct: 540 DWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDALMRIFA 599 Query: 552 SDRIKAFLDRMKLDEEDTVIKSGMLGRQVESAQKRVEGNNYDTRKQVLQYDDVMREQREI 611 SDR+ + ++ + + I+ + + + +AQ++VE N+D RKQ+L+YDDV +QR Sbjct: 600 SDRVSGMMRKLGM-KPGEAIEHPWVTKAIANAQRKVESRNFDIRKQLLEYDDVANDQRRA 658 Query: 612 IYANRRDVITANRDLGPEIKAMIKRTIDRAVDAHARSNR---KDAIDAIVTFARTSLVPE 668 IY+ R +++ + D+ I ++ + +DA+ I + + + Sbjct: 659 IYSQRNELLDVS-DVSETINSIREDVFKATIDAYIPPQSLEEMWDIPGLQERLKNDFDLD 717 Query: 669 EFIS--AKELRGLKDDQIKEKLYQRALAIYDQQLSKLRDQEAIIEFQKVLILMIVDNKWT 726 I+ + L ++ ++E++ +++ +Y ++ + E + F+K ++L +D+ W Sbjct: 718 LPIAEWLDKEPELHEETLRERILAQSIEVYQRKEEVVG-AEMMRHFEKGVMLQTLDSLWK 776 Query: 727 EHIDALDQLRNAVGLRGYAQNNPVVEYQAEGFKMFQDMIGAIEFDVTRTMMKAQIH-EQE 785 EH+ A+D LR + LRGYAQ +P EY+ E F MF M+ +++++V T+ K Q+ +E Sbjct: 777 EHLAAMDYLRQGIHLRGYAQKDPKQEYKRESFSMFAAMLESLKYEVISTLSKVQVRMPEE 836 Query: 786 RERASQRATTAAPQNIQSQQSANTDD-------------LPKVERNEACPCGSGKKFKNC 832 E Q+ A + Q QQ ++ DD KV RN+ CPCGSGKK+K C Sbjct: 837 VEELEQQRRMEAERLAQMQQLSHQDDDSAAAAALAAQTGERKVGRNDPCPCGSGKKYKQC 896 Query: 833 HGR 835 HGR Sbjct: 897 HGR 899
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 347 bits (891), Expect = e-120 Identities = 121/368 (32%), Positives = 193/368 (52%), Gaps = 23/368 (6%) Query: 7 RPTVARVNLQAIKENVASVQKHIPLGVKTYAVVKADAYGHGAVQVSKALLPQVDGYCVSN 66 RP A ++LQA+K+N++ V++ + ++VVKA+AYGHG ++ A+ DG+ + N Sbjct: 3 RPIQASLDLQALKQNLSIVRQAAT-HARVWSVVKANAYGHGIERIWSAI-GATDGFALLN 60 Query: 67 LDEALQLRQAGIDKEILIL-GVLLPNELELAVANAITVTIAS---LDWIALARLEKKECQ 122 L+EA+ LR+ G IL+L G +LE+ + +T + S L + ARL+ Sbjct: 61 LEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNARLKAP--- 117 Query: 123 GLKVHVKVDSGMGRIGLRSSKEVNLLIDSLKELGADVEGIFTHFATADEADDTKFNQQLQ 182 L +++KV+SGM R+G + + + + + +HFA A+ D + Sbjct: 118 -LDIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGIS--GAMA 174 Query: 183 FFKKLIAGLEDKPRLVHASNSATSIWHSDTIFNAVRLGIVSYGLNPSGS-DLSLPFPLQE 241 ++ GL SNSA ++WH + F+ VR GI+ YG +PSG L+ Sbjct: 175 RIEQAAEGL---ECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRP 231 Query: 242 ALSLESSLVHVKMISAGDTVGYGATYTAKKSEYVGTVPIGYADGWTRNM-QGFSVLVDGQ 300 ++L S ++ V+ + AG+ VGYG YTA+ + +G V GYADG+ R+ G VLVDG Sbjct: 232 VMTLSSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHAPTGTPVLVDGV 291 Query: 301 FCEIIGRVSMDQLTIRLPKA--YPLGTKVTLIGSNQQKNISTTDIANYRNTINYEVLCLL 358 +G VSMD L + L +GT V L G K I D+A T+ YE++C L Sbjct: 292 RTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWG----KEIKIDDVAAAAGTVGYELMCAL 347 Query: 359 SDRIPRIY 366 + R+P + Sbjct: 348 ALRVPVVT 355
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 67.7 bits (165), Expect = 3e-15 Identities = 55/265 (20%), Positives = 103/265 (38%), Gaps = 24/265 (9%) Query: 18 VACVNQHPKTAKETEQQRIVATSVAVVDICDRLNLDLVGVCDSKLYTL----PKRYDAVK 73 + A + RIVA V++ L + GV D+ Y L P D+V Sbjct: 20 PLLWQMNTAHAAAIDPNRIVALEWLPVELLLALGIVPYGVADTINYRLWVSEPPLPDSVI 79 Query: 74 RVGLPMNPDIELIASLKPTWILSPNSLQEDLEPKYQKLDTEYGFLNLRSVEG------MY 127 VGL P++EL+ +KP++++ P + L +G Sbjct: 80 DVGLRTEPNLELLTEMKPSFMV----WSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMAR 135 Query: 128 QSIDDLGNLFQRQQEAKELRQQYQDYYRAFQAKRKGK-KKPKVLILMGLPGSYLVATNQS 186 +S+ ++ +L Q A+ QY+D+ R+ + + + +P +L + P LV S Sbjct: 136 KSLTEMADLLNLQSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNS 195 Query: 187 YVGNLLDLAGGENVYQSDEKEFLSA--NPEDMLA-KEPDLILRTAHAIPDKVKVMFDKEF 243 +LD G N +Q + + S + + + A K+ D++ D +M Sbjct: 196 LFQEILDEYGIPNAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALM----- 250 Query: 244 AENDIWKHFTAVKEGKVYDLDNTLF 268 +W+ V+ G+ + F Sbjct: 251 -ATPLWQAMPFVRAGRFQRVPAVWF 274
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 28.2 bits (63), Expect = 0.043 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 5/76 (6%) Query: 255 LASVATSIVGVVSFLGL---IVPHMSRLLVGSKHQILIPFSALLGAFVFLLADTLGRSLA 311 + S A + +GL H S+L++ Q +PFS L V + L Sbjct: 29 VVSTALIVALSAMLMGLSDYYFEHFSKLMLIPAEQSYLPFSQALSYVVDNVLLEFF-YLC 87 Query: 312 YPLEISPAIIMSIVGG 327 +PL ++ A +M+I Sbjct: 88 FPL-LTVAALMAIASH 102
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 94.1 bits (234), Expect = 3e-24 Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 12/165 (7%) Query: 3 SLLIVEDEYLVRQGIRSLVDFSQFKIDRVNEAENGQLAWDLFQKEPYDIVLTDINMPKLN 62 ++L+ +D+ +R + + + + V N W D+V+TD+ MP N Sbjct: 5 TILVADDDAAIRTVLNQALSRAGY---DVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 63 GIQLAELIKQESPQTHLVFLTGYDDFNYALSALKLGADDYLLKPFSKADVEDMLGKLRKK 122 L IK+ P ++ ++ + F A+ A + GA DYL KPF D+ +++G + + Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPF---DLTELIGIIGRA 118 Query: 123 LELSKKTETIQELVEQPQKEVSAIAMAIHE------RLADSDLTL 161 L K+ + E Q + + A+ E RL +DLTL Sbjct: 119 LAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTL 163
>PF06580#Sensor histidine kinase Length = 349 Score = 182 bits (464), Expect = 1e-54 Identities = 57/203 (28%), Positives = 101/203 (49%), Gaps = 10/203 (4%) Query: 362 EKAIGQYRLQALASQINPHFLYNTLDTIIWMAEFNDSKRVVEVTKSLAKYFRLALNQGN- 420 + +L AL +QINPHF++N L+ I + D + E+ SL++ R +L N Sbjct: 155 ASMAQEAQLMALKAQINPHFMFNALNNIRALIL-EDPTKAREMLTSLSELMRYSLRYSNA 213 Query: 421 EYIRLADELDHVSQYLFIQKQRYGDKLSYEVQGLDVYADFVIPKLILQPLVENAIYHGIK 480 + LADEL V YL + ++ D+L +E Q D +P +++Q LVEN I HGI Sbjct: 214 RQVSLADELTVVDSYLQLASIQFEDRLQFENQINPAIMDVQVPPMLVQTLVENGIKHGIA 273 Query: 481 EVDRKGMIKVTVSDTAQHLMLTVWDNGKGIEDSSLTNSQSLLARGGVGLKNVDQRLKLHY 540 ++ + G I + + + L V + G ++ ++ G GL+NV +RL++ Y Sbjct: 274 QLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKEST-------GTGLQNVRERLQMLY 326 Query: 541 GEGYHMTIHSQSDQFTEIQLSLP 563 G + + + + + + +P Sbjct: 327 GTEAQIKLSEKQGKVNAM-VLIP 348
>PF03309#Bvg accessory factor Length = 271 Score = 31.7 bits (72), Expect = 0.003 Identities = 29/126 (23%), Positives = 43/126 (34%), Gaps = 14/126 (11%) Query: 5 LLGIDLGGTTIKFGILTAAGEVQE---KWAIETNILEGGKHIVPDIIASIKHRLDLYGLS 61 LL ID+ T G+++ +G+ + +W I T + D +A L G Sbjct: 2 LLAIDVRNTHTVVGLISGSGDHAKVVQQWRIRTE-----PEVTADELALTIDG--LIGDD 54 Query: 62 SADFVGIGMGSPGAVDRDTNTVTGAFNLNWKETQEVGSVVEKELGIPFAIDNDANVAALG 121 + G S V + V W V GIP +DN V A Sbjct: 55 AERLTGASGLS--TVPSVLHEVRVMLEQYWPNVPHVLIEPGVRTGIPLLVDNPKEVGA-- 110 Query: 122 ERWVGA 127 +R V Sbjct: 111 DRIVNC 116
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 186 bits (473), Expect = 4e-53 Identities = 102/477 (21%), Positives = 187/477 (39%), Gaps = 97/477 (20%) Query: 8 IRNVAIIAHVDHGKTTLVDELLKQSHTLDERKELQE--RAMDSNDLEKERGITILAKNTA 65 I N+ ++AHVD GKTTL + LL S + E + + D+ LE++RGITI T+ Sbjct: 3 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITS 62 Query: 66 VAYNDVRINIMDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLI 125 + + ++NI+DTPGH DF EV R + ++DG +L++ A +G QTR + + + Sbjct: 63 FQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIP 122 Query: 126 PIVVVNKIDKPSARP-------------------------------------AEVVDEVL 148 I +NKID+ + V E Sbjct: 123 TIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEGN 182 Query: 149 ELFIELGADDEQLE-----------------FPVVYASAINGTSSLSDDPADQEHTMAPI 191 + +E + LE FPV + SA N + + Sbjct: 183 DDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIG------------IDNL 230 Query: 192 FDTIIDHIPAPVDNSDEPLQFQVSLLDYNDFVGRIGIGRVFRGTVKVGDQVTLSKLDGTT 251 + I + + L +V ++Y++ R+ R++ G + + D V +S Sbjct: 231 IEVITNKFYSSTHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRIS----EK 286 Query: 252 KNFRVTKLFGFFGLERREIQEAKAGDLIAVSGMEDIFVGETITPTDCVEALPILRIDEPT 311 + ++T+++ E +I +A +G+++ + E + + + T + + P Sbjct: 287 EKIKITEMYTSINGELCKIDKAYSGEIVILQN-EFLKLNSVLGDTKLLPQRERIENPLPL 345 Query: 312 LQMTFLVNNSPFAGREGKWITSRKVEER--LLAELQT----DVSLRVDPTDSPDKWTVSG 365 LQ T + K ++R LL L D LR + + +S Sbjct: 346 LQTT---------------VEPSKPQQREMLLDALLEISDSDPLLRYYVDSATHEIILSF 390 Query: 366 RGELHLSILIETMRRE-GYELQVSRPEVIIKEIDGVKCEPFERVQIDTPEEYQGAII 421 G++ + + ++ + E+++ P VI E K E + I+ P A I Sbjct: 391 LGKVQMEVTCALLQEKYHVEIEIKEPTVIYMERPLKKAE--YTIHIEVPPNPFWASI 445 Score = 42.5 bits (100), Expect = 4e-06 Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 1/79 (1%) Query: 403 EPFERVQIDTPEEYQGAIIQSLSERKGDMLDMQMVGNGQTRLIFLIPARGLIGYSTEFLS 462 EP+ +I P+EY + +++D Q + N + L IPAR + Y ++ Sbjct: 537 EPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCIQEYRSDLTF 595 Query: 463 MTRGYGIMNHTFDQYLPVV 481 T G + Y Sbjct: 596 FTNGRSVCLTELKGYHVTT 614
>LIPPROTEIN48#Mycoplasma P48 major surface lipoprotein signature. Length = 428 Score = 30.4 bits (68), Expect = 0.012 Identities = 19/99 (19%), Positives = 31/99 (31%), Gaps = 10/99 (10%) Query: 147 FEQEDQLSKVKHLGAVTKVFKDANQMPESTQLE-AVKEYFSRDLKTLLFIGGSAGAHVFN 205 FE ++K + + N + S+ E A S K + G Sbjct: 83 FEALKAINKQTGI--------EINNVEPSSNFESAYNSALSAGHKIWVLNGFKHQQS-IK 133 Query: 206 QFISDHPELKQRYNIINITGDPHLNELSSHLYRVDYVTD 244 Q+I H E +R I I D + Y + + Sbjct: 134 QYIDAHREELERNQIKIIGIDFDIETEYKWFYSLQFNIK 172
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 47.4 bits (113), Expect = 5e-08 Identities = 42/191 (21%), Positives = 79/191 (41%), Gaps = 16/191 (8%) Query: 170 RKTVERAGIKVENIIISPLAMAKTILNEGEREFGATVIDMGGGQTTVASMRAQELQYTNI 229 R++ + AG + +I P+A A G+ V+D+GGG T VA + + Y++ Sbjct: 127 RESAQGAGAREVFLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNGVVYSSS 186 Query: 230 YAEGGEYITKDISKVLKTSLAI------AEALKFNFGQAEISEASITETVK-VDVV-GSE 281 GG+ + I ++ + AE +K G A + V+ ++ G Sbjct: 187 VRIGGDRFDEAIINYVRRNYGSLIGEATAERIKHEIGSAYPGDEVREIEVRGRNLAEGVP 246 Query: 282 EPVEVTERYLSEIISARIRHILDRVKQDLER------GRLLDLPGGIVLIGGGAIMPGVV 335 + + E + + I+ V LE+ + + G+VL GGGA++ + Sbjct: 247 RGFTLNSNEILEALQEPLTGIVSAVMVALEQCPPELASDISE--RGMVLTGGGALLRNLD 304 Query: 336 EIAQEIFGVTV 346 + E G+ V Sbjct: 305 RLLMEETGIPV 315
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 707 bits (1827), Expect = 0.0 Identities = 196/577 (33%), Positives = 325/577 (56%), Gaps = 32/577 (5%) Query: 1 MSFDGFFLHHLTNELKENLLYGRIQKVNQPFERELVLTIRNHRKNYKLLLSAHPVFGRVQ 60 M+ DG FL+ + +ELK ++ G+I KVNQP + E++L IR R ++KLL+S+ + R+ Sbjct: 1 MALDGIFLYSIIDELKNTIINGKIDKVNQPEKDEIILNIRKGRLSFKLLISSSSNYPRIH 60 Query: 61 ITQADFQNPQVPNTFTMIMRKYLQGAVIEQLEQIDNDRIIEIKVSNKNEIGDAIQATLII 120 +T NP F M++RKY+ A I + QI+ DRI+ I + +E+G +LII Sbjct: 61 LTDLTKPNPIKAPMFCMVLRKYISNAKIVDIHQINQDRIVVIDFESTDELGFNSIYSLII 120 Query: 121 EIMGKHSNIILVDRAENKIIESIKHVGFSQNSYRTILPGSTYIEPPKTAAVNPFTITD-- 178 EIMG+HSN+ L+ + +N I++SIKH+ N+YR+I PG Y+ PPK+ +NPF + Sbjct: 121 EIMGRHSNMTLIRKRDNIIMDSIKHITPDINTYRSIYPGIEYVYPPKSPKLNPFDFSYDM 180 Query: 179 VPLFEILQTQELTVKSLQQHFQGLGRDTAKELAELLTTDKLKR---------------FR 223 + F + +L + F G+ + + E+ L + + F+ Sbjct: 181 IENFTKENSLQLNDNIFSKIFTGVSKTLSSEICFRLKNNSIDLSLSNLKEIVEVCKDLFK 240 Query: 224 EFFARPTQANLTTASFAPVLF---------SDSHATFETLSDMLDHFYQDKAERDRINQQ 274 E + + N T + + V F +++ S +L++FY K + DR+ + Sbjct: 241 EIQSNKFEFNCYTKNNSFVGFYCLNLMSKEDYKKIQYDSSSKLLENFYYAKDKSDRLKSK 300 Query: 275 ASDLIHRVQTELDKNRNKLSKQEAELLATENAELFRQKGELLTTYLSLVPNNQDSVILDN 334 +SDL V +++ K L E+ ++F+ GELLT + + + L N Sbjct: 301 SSDLQKIVMNNINRCTKKDKILNNTLKKCEDKDIFKLYGELLTANIYALKKGLSHIELAN 360 Query: 335 YYT--GEKIEIALDKALTPNQNAQRYFKKYQKLKEAVKHLSGLIADTKQSITYFESVDYN 392 YY+ + ++I LD+ TP+QN Q Y+KKY KLK++ + + + ++ + Y SV N Sbjct: 361 YYSENYDTVKITLDENKTPSQNVQSYYKKYNKLKKSEEAANEQLLQNEEELNYLYSVLTN 420 Query: 393 LSQA-SIDDIEDIREELYQAGFLKSRQ--RDKRHKRKKPEQYLASDGTTILMVGRNNLQN 449 ++ A + D+IE+I++EL + G++K ++ + K+ K KP +++ DG I VG+NN+QN Sbjct: 421 INNADNYDEIEEIKKELIETGYIKFKKIYKSKKSKTSKPMHFISKDGIDIY-VGKNNIQN 479 Query: 450 EELTFKMAKKGELWFHAKDIPGSHVIIKDNLDPSDEVKTDAAELAAYYSKARLSNLVQVD 509 + LT K A K ++WFH K+IPGSHVI+K+ +D + +AA LAAYYSK++ S+ V VD Sbjct: 480 DYLTLKFANKHDIWFHTKNIPGSHVIVKNIMDIPESTLLEAANLAAYYSKSQNSSNVPVD 539 Query: 510 MIEAKKLHKPSGAKPGFVTYTGQKTLRVTPDQAKILS 546 E K + KP+GAKPG V Y+ +T+ VTP + + Sbjct: 540 YTEVKNVKKPNGAKPGMVIYSTNQTIYVTPTNPNLKN 576
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 31.3 bits (70), Expect = 0.007 Identities = 43/178 (24%), Positives = 81/178 (45%), Gaps = 20/178 (11%) Query: 25 KALKEDDADSLIALGEYLESIGFLPHAKRIYLQLADDYPELNINLAQIAAEDDAIEEAF- 83 + L E++ +S+ + GE + P A R + + P+L IN+ A + +E + Sbjct: 118 QDLSEEEKNSMNSRGEKV------PFASRFVFEKKRETPKLIINIKDYAINSEQSKEVYY 171 Query: 84 -----LYLDKVSKDS---PNYLSALLVMADLYDMEGLTEVAREKLLQAVGISPEPLVIFG 135 + LD +SKD P +L+ + ++D D + + +K + + ++ + + I Sbjct: 172 EIGKGISLDIISKDKSLDPEFLNLIKSLSD--DSDSSDLLFSQKFKEKLELNNKSIDINF 229 Query: 136 LAEIDMSLQH-FKEAIDYYAQLDNRQILELTGISTYQRIGRAYASLGKFEAAIEFLEK 192 + E QH F A YY D+R +LEL ++ + + G FE E L+K Sbjct: 230 IKENLTEFQHAFSLAFSYYFAPDHRTVLELYAPDMFEYMNK--LEKGGFEKISESLKK 285
>BACTRLTOXIN#Bacterial toxin signature. Length = 266 Score = 171 bits (435), Expect = 4e-55 Identities = 60/263 (22%), Positives = 122/263 (46%), Gaps = 32/263 (12%) Query: 1 MKKINIIKIVFIITVILISTISPIIKSDSKKD-----------ISNVKSDLLYAYTITPY 49 M K I V +I +++ +P + ++S+ D + ++ Y Y Sbjct: 1 MYKRLFISRVILIFALILVISTPNVLAESQPDPMPDDLHKSSEFTGTMGNMKYLYDDHYV 60 Query: 50 DYKNCR-VNFSTTHTL--NIDTQKYRGKDYYISSEMSYEASQKFKRDDHVDVFGLFYILN 106 + V+ H L NI +K + D + ++ + ++K+K D+ VDV+G Y +N Sbjct: 61 SATKVKSVDKFLAHDLIYNISDKKLKNYDKVKTELLNEDLAKKYK-DEVVDVYGSNYYVN 119 Query: 107 SHTGEY------------IYGGITPAQNNKVNHKLLGNLFIS-GESQQN-LNNKIILEKD 152 + +YGGIT + N ++ L N+ + E+++N ++ ++ +K Sbjct: 120 CYFSSKDNVGKVTGGKTCMYGGITKHEGNHFDNGNLQNVLVRVYENKRNTISFEVQTDKK 179 Query: 153 IVTFQEIDFKIRKYLMDNYKIYD-ATSPYVSGRIEIGTKDGKHEQIDLFDSPNEG-TRSD 210 VT QE+D K R +L++ +Y+ +SPY +G I+ +G D+ +P + +S Sbjct: 180 SVTAQELDIKARNFLINKKNLYEFNSSPYETGYIKFIENNGNTFWYDMMPAPGDKFDQSK 239 Query: 211 IFAKYKDNRIINMKNFSHFDIYL 233 Y DN+ ++ K+ +++L Sbjct: 240 YLMMYNDNKTVDSKS-VKIEVHL 261
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 136 bits (344), Expect = 1e-38 Identities = 70/231 (30%), Positives = 116/231 (50%), Gaps = 22/231 (9%) Query: 38 WEFLGKPMSYFIDYFANNAGLGYGLAIIIVTIIVRTLILPLGLYQSWKASYQS-EKMAFL 96 F+ +P+ + + + G +G +III+T IVR ++ PL KA Y S KM L Sbjct: 333 LWFISQPLFKLLKWIHSFVG-NWGFSIIIITFIVRGIMYPLT-----KAQYTSMAKMRML 386 Query: 97 KPVFEPINKRIKQANSQEEKMAAQTELMAAQRAHGINPLGGIGCLPLLIQMPFFSAMYFA 156 +P + + +R+ ++K E+MA +A +NPLGG C PLLIQMP F A+Y+ Sbjct: 387 QPKIQAMRERLG-----DDKQRISQEMMALYKAEKVNPLGG--CFPLLIQMPIFLALYYM 439 Query: 157 AQYTKGVSTSTFMG--IDLGSR--SLVLTAIIAALYFFQSWLSMMAVSEEQREQMKTMMY 212 + + + F DL ++ +L ++ FF +S V++ + +M Sbjct: 440 LMGSVELRQAPFALWIHDLSAQDPYYILPILMGVTMFFIQKMSPTTVTDPM---QQKIMT 496 Query: 213 TMPIMMIFMSFSLPAGVGLYWLVGGFFSIIQQ-LITTYLLKPRLHKQIKEE 262 MP++ P+G+ LY++V +IIQQ LI L K LH + K++ Sbjct: 497 FMPVIFTVFFLWFPSGLVLYYIVSNLVTIIQQQLIYRGLEKRGLHSREKKK 547
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 32.2 bits (73), Expect = 5e-04 Identities = 26/131 (19%), Positives = 47/131 (35%), Gaps = 29/131 (22%) Query: 35 EHIRLIPDTFLVALIDQEIVGYIEGPVVTTPILEDSLFHGVTKNPKTGGYIAITSLSIAK 94 ++ + ++ +G I+ + N GY I +++AK Sbjct: 58 SYVEEEGKAAFLYYLENNCIGRIK----------------IRSN--WNGYALIEDIAVAK 99 Query: 95 HFQQQGVGTALLAALKDLVVAQQRTGLILTCHDYLIS---YYEMNGFINQGISESQHGGT 151 ++++GVGTALL + GL+L D IS +Y + FI + + Sbjct: 100 DYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFIIGAVDTMLYSNF 159 Query: 152 --------LWY 154 WY Sbjct: 160 PTANEIAIFWY 170
>ACETATEKNASE#Acetate kinase family signature. Length = 400 Score = 31.3 bits (71), Expect = 0.008 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 9/55 (16%) Query: 304 IINDTII--IDDFA-----HHPTEIVATIDAARQKYPSKEIVAIFQPHTFTRTIA 351 +I D ++ I D H+P I I A Q P +VA+F F +T+ Sbjct: 103 LITDDVLKAITDCIELAPLHNPANIEG-IKACTQIMPDVPMVAVFDT-AFHQTMP 155
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 37.1 bits (86), Expect = 1e-04 Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 8/87 (9%) Query: 36 GVTRDRIYATGEWLNRQFSLIDTGGIDDVDAPFMEQIKHQAQIAMEEADVIVFVVSGKEG 95 G+T + +W N + ++IDT G D F+ ++ ++ D + ++S K+G Sbjct: 53 GITIQTGITSFQWENTKVNIIDTPGHMD----FLAEVYR----SLSVLDGAILLISAKDG 104 Query: 96 VTDADEYVSKILYRTNTPVILAVNKVD 122 V + L + P I +NK+D Sbjct: 105 VQAQTRILFHALRKMGIPTIFFINKID 131
>ACETATEKNASE#Acetate kinase family signature. Length = 400 Score = 502 bits (1293), Expect = e-180 Identities = 209/401 (52%), Positives = 281/401 (70%), Gaps = 7/401 (1%) Query: 3 KTIAINAGSSSLKWQLYQMPEEAVLAQGIIERIGLKDSISTVKYDGKKEEQILDIHDHTE 62 K + IN GSSSLK+QL + + VLA+G+ ERIG+ DS+ T +G+K + D+ DH + Sbjct: 2 KILVINCGSSSLKYQLIESKDGNVLAKGLAERIGINDSLLTHNANGEKIKIKKDMKDHKD 61 Query: 63 AVKILLNDLI--HFGIIAAYDEITGVGHRVVAGGELFKESVVVNDKVLEQIEELSVLAPL 120 A+K++L+ L+ +G+I EI VGHRVV GGE F SV++ D VL+ I + LAPL Sbjct: 62 AIKLVLDALVNSDYGVIKDMSEIDAVGHRVVHGGEYFTSSVLITDDVLKAITDCIELAPL 121 Query: 121 HNPGAAAGIRAFRDILPDITSVCVFDTSFHTSMAKHTYLYPIPQKYYTDYKVRKYGAHGT 180 HNP GI+A I+PD+ V VFDT+FH +M + YLYPIP +YYT YK+RKYG HGT Sbjct: 122 HNPANIEGIKACTQIMPDVPMVAVFDTAFHQTMPDYAYLYPIPYEYYTKYKIRKYGFHGT 181 Query: 181 SHKYVAQEAAKMLGRPLEELKLITAHIGNGVSITANYHGKSVDTSMGFTPLAGPMMGTRS 240 SHKYV+Q AA++L +P+E LK+IT H+GNG SI A +GKS+DTSMGFTPL G MGTRS Sbjct: 182 SHKYVSQRAAEILNKPIESLKIITCHLGNGSSIAAVKNGKSIDTSMGFTPLEGLAMGTRS 241 Query: 241 GDIDPAIIPYLIEQDPELKDAADVVNMLNKKSGLSGVSGISSDMRDI-EAGLQEDNPDAV 299 G IDP+II YL+E+ E A +VVN+LNKKSG+ G+SGISSD RD+ +A + + A Sbjct: 242 GSIDPSIISYLMEK--ENISAEEVVNILNKKSGVYGISGISSDFRDLEDAAFKNGDKRAQ 299 Query: 300 LAYNIFIDRIKKCIGQYFAVLNGADALVFTAGMGENAPLMRQDVIGGLTWFGMDIDPEKN 359 LA N+F R+KK IG Y A + G D +VFTAG+GEN P +R+ ++ GL + G +D EKN Sbjct: 300 LALNVFAYRVKKTIGSYAAAMGGVDVIVFTAGIGENGPEIREFILDGLEFLGFKLDKEKN 359 Query: 360 -VFGYRGDISTPESKVKVLVISTDEELCIARDVERL-KNTK 398 V G IST +SKV V+V+ T+EE IA+D E++ ++ K Sbjct: 360 KVRGEEAIISTADSKVNVMVVPTNEEYMIAKDTEKIVESLK 400
>OMPTIN#Omptin serine protease signature. Length = 317 Score = 28.0 bits (62), Expect = 0.012 Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 9/71 (12%) Query: 37 LLKHSHYLARHDQDNWLLFSHQL--REELSGARFYKVADNK-LYVEKGKKVLAFGQFKSH 93 K+S ++ D D ++ R ++ +Y VA N YV KV G + Sbjct: 217 TFKYSGWVESSDNDEHYDPGKRITYRSKVKDQNYYSVAVNAGYYVTPNAKVYVEGAWNRV 276 Query: 94 DFRKSASNGKG 104 N KG Sbjct: 277 T------NKKG 281
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 52.6 bits (126), Expect = 4e-12 Identities = 28/94 (29%), Positives = 50/94 (53%), Gaps = 4/94 (4%) Query: 9 RHKKLKGFTLLEMLLVILVISVLMLLFVPNLSKQKDRVTETGNAAVVKLVENQAELYELS 68 K +GFTLLE+++VI++I VL L VPNL K++ + + + +EN ++Y+L Sbjct: 3 ATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKLD 62 Query: 69 QGSKPSLSQ-LKA--DGSITEKQEKAY-QDYYDK 98 P+ +Q L++ + Y ++ Y K Sbjct: 63 NHHYPTTNQGLESLVEAPTLPPLAANYNKEGYIK 96
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 88.0 bits (218), Expect = 5e-22 Identities = 59/291 (20%), Positives = 118/291 (40%), Gaps = 20/291 (6%) Query: 4 SLLKGQGLADMLSGLG--FSDAILTQISLADRHGNIETTLVAIQHYLNQMARIRRKTVEV 61 +++G LAD + F ++ + G+++ L + Y Q ++R + + Sbjct: 113 KVMEGHSLADAMKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQA 172 Query: 62 ITYPLILLLFLFVMMLGLRRYLVPQLETQNQ---------------ITYFLNHFPAFFIG 106 + YP +L + ++ L +VP++ Q ++ + F + + Sbjct: 173 MIYPCVLTVVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLL 232 Query: 107 FCSGLILLFGMVWLRWRSQSRLKLYSRLSRYPFLGKLLKQYLTSYYAREWGTLIGQGLDL 166 + F + LR + + R+ + RL P +G++ + T+ YAR L + L Sbjct: 233 ALLAGFMAFRV-MLR-QEKRRVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPL 290 Query: 167 MTILDIMAIEKSSL-MKELAEDIRMSLLEGQAFHIKVATYPFFKKELSLMIEYGEIKSKL 225 + + I S+ + ++ EG + H + F + MI GE +L Sbjct: 291 LQAMRISGDVMSNDYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMIASGERSGEL 350 Query: 226 GAELEIYAQESWEQFFSQLYQVTQLIQPAIFLVVAVTIVMIYAAILLPIYQ 276 + LE A +F SQ+ L +P + + +A ++ I AIL PI Q Sbjct: 351 DSMLERAADNQDREFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPILQ 401 Score = 34.8 bits (80), Expect = 3e-04 Identities = 32/129 (24%), Positives = 60/129 (46%), Gaps = 6/129 (4%) Query: 154 REWGTLIGQGLDLMTILDIMAIE-KSSLMKELAEDIRMSLLEGQAFHIKVATYP-FFKKE 211 R+ TL+ + L LD +A + + + +L +R ++EG + + +P F++ Sbjct: 75 RQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSLADAMKCFPGSFERL 134 Query: 212 LSLMIEYGEIKSKLGAELEIYA--QESWEQFFSQLYQVTQLIQPAIFLVVAVTIVMIYAA 269 M+ GE L A L A E +Q S++ Q +I P + VVA+ +V I + Sbjct: 135 YCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQA--MIYPCVLTVVAIAVVSILLS 192 Query: 270 ILLPIYQNM 278 +++P Sbjct: 193 VVVPKVVEQ 201