>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 31.0 bits (70), Expect = 0.013 Identities = 18/101 (17%), Positives = 40/101 (39%), Gaps = 11/101 (10%) Query: 287 EVINYIATNMGDNIREIEG-AIINLNVFKTLMKEEITLDLAKSI-----LKDLIKE-KRE 339 ++ +Y+A+N+ D + + G + L + M I LD D+I + K + Sbjct: 153 DISDYVASNVKDTLSRLNGVGDVQLFGAQYAM--RIWLDADLLNKYKLTPVDVINQLKVQ 210 Query: 340 NINFD--TIVEIVSKELNIKQSDIKSKSRVTNIVEARRIII 378 N + + + I +++R N E ++ + Sbjct: 211 NDQIAAGQLGGTPALPGQQLNASIIAQTRFKNPEEFGKVTL 251
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 41.1 bits (96), Expect = 8e-06 Identities = 43/235 (18%), Positives = 81/235 (34%), Gaps = 32/235 (13%) Query: 302 NKEKLSSEIYNSDGTKSLVTINFTKQIPQGGNQTTWNATATITDANGVVQNTAMGTLTFD 361 NK ++ +D + + T + W T ++ V A G + FD Sbjct: 340 NKGDVAIGATVTDAS----AVLATDY-KISFDNNQWQVTRLASNTTFTVTPDANGKVAFD 394 Query: 362 GSGRLVTNTLTSVGNVALNFLGDGDANVYNGITSSAN-SKKDFVIKADGYAEGNLSKYSV 420 G T T + L + D N+ IT A + D Sbjct: 395 GLELTFTGTPAVNDSFTLKPVSDAIVNMDVLITDEAKIAMASEEDAGDS----------- 443 Query: 421 DDRGNIMANFD---NSRSFIVAKIALYHFQNEQGVSKVGDNLYEATPNSGEAFFYKNKAG 477 D N A D NS++ AK + + S +G+ +S G Sbjct: 444 -DNRNGQALLDLQSNSKTVGGAKSFNDAYASLV--SDIGNKTATLKTSS-------ATQG 493 Query: 478 ETIYGSQILSNKLEMSNVDLGQALSEVIVTQKAYEASAKSITTSDEMIQTAIQMK 532 + +Q+ + + +S V+L + + Q+ Y A+A+ + T++ + I ++ Sbjct: 494 NVV--TQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINIR 546
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 196 bits (499), Expect = 7e-57 Identities = 108/447 (24%), Positives = 189/447 (42%), Gaps = 86/447 (19%) Query: 3 KIRNIAVIAHVDHGKTTMVDELLKQSGTFNE--HQNLGERVMDSNDIERERGITILSKNT 60 KI NI V+AHVD GKTT+ + LL SG E + G D+ +ER+RGITI + T Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 61 AIRYKDTKINIIDTPGHADFGGEVERVLKMVDGVLLLVDAQEGVMPQTKFVVKKALSLGL 120 + ++++TK+NIIDTPGH DF EV R L ++DG +LL+ A++GV QT+ + +G+ Sbjct: 62 SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGI 121 Query: 121 RPIVVVNKIDKPAGDPDRVINEIFDLFVA----------------------------LDA 152 I +NKID+ D V +I + A ++ Sbjct: 122 PTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEG 181 Query: 153 NDEQLE--------------------------FPVVYAAAKNGYAKLKLSDENKDMQPLF 186 ND+ LE FPV + +AKN N + L Sbjct: 182 NDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKN----------NIGIDNLI 231 Query: 187 ETILSHVPAPSGSDENSLQLQVFTLDYDNYVGKIGIARIFNGKISKNQNVMLAKADGTKT 246 E I + + + ++ L +VF ++Y ++ R+++G + +V ++ K Sbjct: 232 EVITNKFYSSTHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRIS----EKE 287 Query: 247 TGRISKLIGFMGLERTDINEAGTGDIVAIAGFDA---LDVGDSVVDPNNPHPLDPLHIEE 303 +I+++ + E I++A +G+IV + +GD+ + P +PL Sbjct: 288 KIKITEMYTSINGELCKIDKAYSGEIVILQNEFLKLNSVLGDTKLLPQRERIENPL---- 343 Query: 304 PTLSVVFSVNDGPLAGTEGKHVTSNKIDERLANEMKTNIAMKYENIGEGKFKVSGRGELQ 363 P L + + +++ Y + + +S G++Q Sbjct: 344 PLLQTTVEPSKPQQREMLLDALLE------ISDSDPL--LRYYVDSATHEIILSFLGKVQ 395 Query: 364 ITILAENMRRE-GYEFLLGRPEVIVKE 389 + + ++ + E + P VI E Sbjct: 396 MEVTCALLQEKYHVEIEIKEPTVIYME 422 Score = 41.8 bits (98), Expect = 7e-06 Identities = 20/80 (25%), Positives = 29/80 (36%), Gaps = 1/80 (1%) Query: 396 EPYELLVIDAPDDTTGTVIEKLGKRKAEMVSMNPTGDGQTRIEFEIPARGLIGFRSQFLT 455 EPY I AP + K A +V + + + EIPAR + +RS Sbjct: 537 EPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCIQEYRSDLTF 595 Query: 456 DTKGEGVMNHSFLEFRPLSG 475 T G V + +G Sbjct: 596 FTNGRSVCLTELKGYHVTTG 615
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.5 bits (63), Expect = 0.043 Identities = 9/70 (12%), Positives = 19/70 (27%) Query: 20 EALWRAQSDEVDAGRSFAEEERKFDGGSEAQRAENLAQTGKTSSQRECEKKTKFEIIACT 79 E +R + + A AE AQ G + + + + Sbjct: 751 EIYFRPEQELRLVETGVQGRLWALLTREGAPAAEGAAQKGYSVNTTFVTIADLVQALGAD 810 Query: 80 RSKNEALRQR 89 K+ + + Sbjct: 811 PGKSSPMLEG 820
>BORPETOXINA#Bordetella pertussis toxin A subunit signature. Length = 269 Score = 31.3 bits (70), Expect = 0.004 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 7/60 (11%) Query: 237 KLFLDESGQKELQARYERGGEGHGHFKAYLNELIWD--YFKDAREKFEH---YQNNPGEV 291 +++L+ Q+ ++A ER G G GHF Y+ E+ D ++ A FE+ Y +N G + Sbjct: 95 EVYLEHRMQEAVEA--ERAGRGTGHFIGYIYEVRADNNFYGAASSYFEYVDTYGDNAGRI 152
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 34.8 bits (80), Expect = 7e-04 Identities = 30/146 (20%), Positives = 64/146 (43%), Gaps = 7/146 (4%) Query: 196 KNIRVGIIGRVNVGKSSLLNALVKESRAV--VSDV-AGTTIDPVNEIYEHDGRVFEFVDT 252 K I +G++ V+ GK++L +L+ S A+ + V GTT + G + T Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 253 AGIRKRGKIEGIERYA----LNRTEKILEETDVALLVLDSSEPLTELDERIAGIASKFEL 308 + + K+ I+ L + L D A+L++ + + + + K + Sbjct: 62 SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGI 121 Query: 309 GVIIVLNKWDKSSEEFDELCKEIKDR 334 I +NK D++ + + ++IK++ Sbjct: 122 PTIFFINKIDQNGIDLSTVYQDIKEK 147
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 78.4 bits (193), Expect = 8e-18 Identities = 49/325 (15%), Positives = 111/325 (34%), Gaps = 52/325 (16%) Query: 73 NDYIIKFKHVSKEDVVSALSLFSENIK---------------YTVYSD----RILLITTE 113 N +I K+ D+V L+ S ++ + + +++ Sbjct: 268 NTKVIYLKYAKASDLVEVLTGISSTMQSEKQAAKPVAALDKNIIIKAHGQTNALIVTAAP 327 Query: 114 SQYEIINNLINGLDTSYQLRQLSFTIISTDNTKLKEIGPRIESLLNPLDHFY---FKIIT 170 + +I LD + I + +G + + + F I T Sbjct: 328 DVMNDLERVIAQLDIRRPQVLVEAIIAEVQDADGLNLGIQWANKNAGMTQFTNSGLPIST 387 Query: 171 NVLTVDSTKVNKDSVTS----------------------LINLLKEKGVSDLLYNPRVTL 208 + + + +S L+ L +D+L P + Sbjct: 388 AIAGANQYNKDGTVSSSLASALSSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVT 447 Query: 209 IDNKDSVIESVIKTPIQKSSIEIQNNQRMTTNQVDYQDVGLKLYITNVLITNDSVSFTLD 268 +DN ++ + P+ S + N V+ + VG+KL + + DSV ++ Sbjct: 448 LDNMEATFNVGQEVPVLTGSQTTSGDN--IFNTVERKTVGIKLKVKPQINEGDSVLLEIE 505 Query: 269 LYIENLLDDT------LTPRISSRHLKTNVYLTDSNSFLIGGINSKETIKSTKTIPFVEN 322 + ++ D L ++R + V + + ++GG+ K + +P + + Sbjct: 506 QEVSSVADAASSTSSDLGATFNTRTVNNAVLVGSGETVVVGGLLDKSVSDTADKVPLLGD 565 Query: 323 IPILGDITTYKSEKTTDYSFSIFIT 347 IP++G + S+K + + +FI Sbjct: 566 IPVIGALFRSTSKKVSKRNLMLFIR 590 Score = 34.1 bits (78), Expect = 0.001 Identities = 12/66 (18%), Positives = 29/66 (43%), Gaps = 2/66 (3%) Query: 4 ISSITGKNIVISGNVDTNFDVFLPTLDLSNTDTFSKLLKDILNVNGLDYLIQDSVLLIYN 63 +S K ++I +V V + D+ N + + + +L+V G + ++ +L Sbjct: 46 VSKNLNKTVIIDPSVRGTITVR--SYDMLNEEQYYQFFLSVLDVYGFAVINMNNGVLKVV 103 Query: 64 PTVEDK 69 + + K Sbjct: 104 RSKDAK 109
>FIMBRIALPAPE#Escherichia coli: P pili tip fibrillum papE protein signature. Length = 173 Score = 33.1 bits (75), Expect = 0.002 Identities = 26/116 (22%), Positives = 50/116 (43%), Gaps = 17/116 (14%) Query: 460 IKQTSNTGNKATYKGNIVTPDQSIIDVDV------VETTTQTGSRVQDVTYSYTYKTPKG 513 + Q + + T+KG ++ P ++ + +V ++ Q+G +D T G Sbjct: 18 MSQHVHAADNLTFKGKLIIPACTVQNAEVNWGDIEIQNLVQSGGNQKDFTVDMNCPYSLG 77 Query: 514 SSKFSTGYVNTIGSDNRVNNSIPKDGTSSSGGNS-----SSPGNGGSGSSTTTPTQ 564 + K TI S+ + NSI TS++ G+ + N G G++ T +Q Sbjct: 78 TMKV------TITSNGQTGNSILVPNTSTASGDGLLIYLYNSNNSGIGNAVTLGSQ 127
>RTXTOXINC#Gram-negative bacterial RTX toxin-activating protein C signature. Length = 170 Score = 27.2 bits (60), Expect = 0.019 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 2/35 (5%) Query: 28 NQEKYIKDLNLVG--DWNIQTERYFIDFILTAGNN 60 N+ KY+ D+ + DW ++FID+I G+N Sbjct: 66 NEIKYLNDVTSLVAEDWTSGDRKWFIDWIAPFGDN 100
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 39.1 bits (91), Expect = 7e-05 Identities = 34/152 (22%), Positives = 60/152 (39%), Gaps = 21/152 (13%) Query: 605 ELALKLKIAALVVAFLLLWFYFSALVSALVMGIIV-FGVLLTLFIFAIFGINLSIFGVFG 663 E+ L A ++V ++ F + + + L+ I V +L T I A FG +++ +FG Sbjct: 339 EVVKTLFEAIMLVFLVMYLFLQN-MRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFG 397 Query: 664 LILASAVGIDYMI--------FALNDSLSEKERIY-----------GILCAFVTSFISFF 704 ++LA + +D I + D L KE GI FI Sbjct: 398 MVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMA 457 Query: 705 TLSFSQTAALSVFGLSVSLCVLIYGLCASVLS 736 S A F +++ + + L A +L+ Sbjct: 458 FFGGSTGAIYRQFSITIVSAMALSVLVALILT 489 Score = 33.3 bits (76), Expect = 0.004 Identities = 28/160 (17%), Positives = 62/160 (38%), Gaps = 21/160 (13%) Query: 594 SSLNESLTQAKELALKLKIAALVVAFLLLWFYF-SALVSALVMGIIVFGVLLTLFIFAIF 652 + ++ + A L + VV FL L + S + VM ++ G++ L +F Sbjct: 859 TGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLF 918 Query: 653 GINLSIFGVFGLI----LASAVGIDYMIFALNDSLSE------------KERIYGILCAF 696 ++ + GL+ L++ I + FA + E + R+ IL Sbjct: 919 NQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTS 978 Query: 697 VTSFISFFTLSFSQTA-ALSVFGLSVSLCVLIYGLCASVL 735 + + L+ S A + + + + ++ G+ ++ L Sbjct: 979 LAFILGVLPLAISNGAGSGAQNAVGI---GVMGGMVSATL 1015 Score = 32.1 bits (73), Expect = 0.010 Identities = 33/173 (19%), Positives = 71/173 (41%), Gaps = 17/173 (9%) Query: 218 YQAFSKQKNESESLYMSALSLSLTAMFLMLA--FRNLRI-FYVIFIAAFGFSVAFAGTLL 274 + S Q+ S + + +++S +FL LA + + I V+ + G L Sbjct: 858 WTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATL 917 Query: 275 CLGELNILTILISTSLIG-------LMFDYVLHWLSKNEGEAIR---ADSIKNMLKIFLL 324 + ++ ++ + IG L+ ++ L + EG+ + +++ L+ L+ Sbjct: 918 FNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKD-LMEKEGKGVVEATLMAVRMRLRPILM 976 Query: 325 GLLITLSGYLAFTFSN---LKLLKEVALFSAFALVTAFLASYFFMPLVFEGVK 374 L + G L SN V + +V+A L + FF+P+ F ++ Sbjct: 977 TSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFVVIR 1029
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 352 bits (905), Expect = e-123 Identities = 111/351 (31%), Positives = 183/351 (52%), Gaps = 1/351 (0%) Query: 7 EKTEEATPKKIEDAKKDGNVPKSQDLAGFVTLVIAIGVLLAMLNFMKEQIISLYIYYSKF 66 EKTE+ TPKKI DA+K G V KS+++ +V +L+ + ++ E L + ++ Sbjct: 4 EKTEQPTPKKIRDARKKGQVAKSKEVVSTALIVALSAMLMGLSDYYFEHFSKLMLIPAEQ 63 Query: 67 IGQPLTLPTVKMIVVNTFARSLLMILPVCICVAIAGVIANVMQFGFIFTAKPIMPNFGKI 126 P + + +V N + P+ A+ + ++V+Q+GF+ + + I P+ KI Sbjct: 64 SYLPFS-QALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPDIKKI 122 Query: 127 NPLKGLKNLFSMKKVIDSIKIVLKVSIVFGVGFYFFLQFIKELPHTLFFSMFDQLAWLKE 186 NP++G K +FS+K +++ +K +LKV ++ + + + L + L + Sbjct: 123 NPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITPLLGQ 182 Query: 187 KLIILVSVMLFILFVIGLIDLLIVRFQYFKDLRMSKQEIKDEYKQMEGDPQVKGRIRQAQ 246 L L+ + VI + D +QY K+L+MSK EIK EYK+MEG P++K + RQ Sbjct: 183 ILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKRRQFH 242 Query: 247 MRAAKRRMMQNIPQADVVITNPTHYAVAIRYDKSRDEAPIILAKGVDFLALQIKKIAVEN 306 R M +N+ ++ VV+ NPTH A+ I Y + P++ K D ++KIA E Sbjct: 243 QEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKIAEEE 302 Query: 307 GVQIYENPPLARELYKICEVDDTIPAHLFRAVAEVLSFVYMSNKQKFKDKL 357 GV I + PLAR LY VD IPA A AEVL ++ N +K ++ Sbjct: 303 GVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLERQNIEKQHSEM 353
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 42.7 bits (100), Expect = 2e-06 Identities = 41/224 (18%), Positives = 79/224 (35%), Gaps = 17/224 (7%) Query: 60 QTIKAPKQADEVV----KETKPKPKKESEEDKQETTNKPVVPDEPLPTPSLPTPPKEEPK 115 QT + + E ETK E EE + T K + P T + P +E+ + Sbjct: 1081 QTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEK--TQEVPKVTSQVS-PKQEQSE 1137 Query: 116 PEPKKSEPKPEISKPSEESKEDVKPESKPEPKPTPKPVEKPKPKEPNIKDLFSDIDPTKL 175 ++EP E + P+ KE + P ++P + T Sbjct: 1138 TVQPQAEPARE-NDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTE------STTVN 1190 Query: 176 KKDDGIKKTENKVQSRKKSEASSSKAAKEASDIIKSLKIDQNPTAPKSQSTGTYDPLMGA 235 + ++ EN + + +S + K + +S++ P + +T + D A Sbjct: 1191 TGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVR--SVPHNVEPATTSSNDRSTVA 1248 Query: 236 ITKQIQRRWQSYKADSANLAKVKVMIDQSGNFSYEILELSYNEE 279 + + +D+ A+ V ++ S I +L N E Sbjct: 1249 LCDLTSTNTNAVLSDARAKAQF-VALNVGKAVSQHISQLEMNNE 1291 Score = 40.8 bits (95), Expect = 6e-06 Identities = 45/258 (17%), Positives = 83/258 (32%), Gaps = 37/258 (14%) Query: 39 KKYTDDKDAIMDVVMVDREIDQTIKAPKQADEV------VKETKPKPKKES------EED 86 K D + V +E +KA Q +EV KET+ KE+ E+ Sbjct: 1053 KNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKA 1112 Query: 87 KQETTNKPVVPD-----EPLPTPSLPTPPKEEPKPEP----------KKSEPKPEISKPS 131 K ET VP P S P+ EP E ++ + +P+ Sbjct: 1113 KVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPA 1172 Query: 132 EESKEDVKP--ESKPEPKPTPKPVEKPKPKEPNIKDLFSDIDPTKLKKDDGIKKTENK-- 187 +E+ +V+ VE P+ P + PT + K ++ Sbjct: 1173 KETSSNVEQPVTESTTVNTGNSVVENPENTTP------ATTQPTVNSESSNKPKNRHRRS 1226 Query: 188 VQSRKKSEASSSKAAKEASDIIKSLKIDQNPTAPKSQSTGTYDPLMGAITKQIQRRWQSY 247 V+S + ++ ++ + S + N A S + + + K + + Sbjct: 1227 VRSVPHNVEPATTSSNDRSTVALCDLTSTNTNAVLSDARAKAQFVALNVGKAVSQHISQL 1286 Query: 248 KADSANLAKVKVMIDQSG 265 + ++ V V Sbjct: 1287 EMNNEGQYNVWVSNTSMN 1304
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 112 bits (281), Expect = 2e-32 Identities = 37/115 (32%), Positives = 56/115 (48%), Gaps = 9/115 (7%) Query: 61 SVYFDFDKFNIKADQQGVVSSNASVFNQADAQALSIKVEGNCDEWGTDEYNYALGLKRAK 120 V F+F+K +K + Q + S + D + S+ V G D G+D YN L +RA+ Sbjct: 220 DVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQ 279 Query: 121 SAKDALVRNGVSADRIAVVSFGESNPVCTDKT---------KACDAQNRRADFKV 166 S D L+ G+ AD+I+ GESNPV + C A +RR + +V Sbjct: 280 SVVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEV 334
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 80.2 bits (198), Expect = 1e-21 Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 1/76 (1%) Query: 8 AVALGYNRSKDNAPRVLASGAGEIANRIIDLAKEHDIPIKEDPDLI-EILSKVEVDQEIP 66 A+ + Y R + P V + +A+E +PI + L + VD IP Sbjct: 268 AIGILYKRGETPLPLVTFKYTDAQVQTVRKIAEEEGVPILQRIPLARALYWDALVDHYIP 327 Query: 67 PNLYKAVAEIFSFLYK 82 +A AE+ +L + Sbjct: 328 AEQIEATAEVLRWLER 343
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 42.5 bits (100), Expect = 2e-06 Identities = 61/342 (17%), Positives = 126/342 (36%), Gaps = 26/342 (7%) Query: 61 VVIAPFSGILVDKFSPKPMLVIMMAVETISVFMLLFIDSLDFLWLLLLIIFVRNGTGGMY 120 AP G L D+F +P+L++ +A + ++ L L++ ++ G G Sbjct: 57 FACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIV----AGITGAT 112 Query: 121 FQVEMSVLPKILSKENLKLANEIHSIIWAVSYTAGMGLAGVYIHFFGIKSAFLLDGILYI 180 V + + I + S + AG L G + F + F L Sbjct: 113 GAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGG-LMGGFSPHAPFFAAAALNG 171 Query: 181 LSFGFLYFLNLQSLKPEFIEKPLKML-KNGLVYLKENRLIVHLIFLHA-FVGITAYD--- 235 L+F FL +S K E +PL+ N L + R + + L A F + Sbjct: 172 LNFLTGCFLLPESHKGE--RRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVP 229 Query: 236 -ALIALLADYKYA-NLLSTSLVIGLLNTSRSISLMFAPAILSKFINKNTLI---FVYIGQ 290 AL + + ++ + + + + S++ ++ + + + + G Sbjct: 230 AALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGT 289 Query: 291 GLGIIIWALSLWNFYLSLIGIIFAGFCTSSLWSYTYTMLQQNCKKEFYGRVIAYNDMIFL 350 G ++ +A W + ++ + G +L ML + +E G++ Sbjct: 290 GYILLAFATRGWMAFPIMVLLASGGIGMPAL----QAMLSRQVDEERQGQLQGSLAA--- 342 Query: 351 GFSALISFIIGLLYDIGFSVEMIASFMGSLFFVGAFYYHIVL 392 ++L S + LL+ ++ I ++ G + GA Y + L Sbjct: 343 -LTSLTSIVGPLLFTAIYAAS-ITTWNGWAWIAGAALYLLCL 382
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 28.0 bits (62), Expect = 0.009 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 4/57 (7%) Query: 1 MR-KGFTLIAAIFFLVVAASISTLALSIASTSARQSSEIYL-REQAQLVAQAAAEYA 55 MR +GFTL+ + L++ + + L S S+ L R +AQL + + Sbjct: 1 MRQRGFTLLEMMLILLLMGVSAGMVLLAFPASRDDSAAQTLARFEAQL--RFVQQRG 55
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 30.6 bits (69), Expect = 0.004 Identities = 11/25 (44%), Positives = 19/25 (76%), Gaps = 2/25 (8%) Query: 3 MKKTKK--AFTLIELIIVITVLGVI 25 M+ T K FTL+E+++VI ++GV+ Sbjct: 1 MRATDKQRGFTLLEIMVVIVIIGVL 25
>PF02370#M protein repeat Length = 168 Score = 31.2 bits (70), Expect = 0.008 Identities = 24/116 (20%), Positives = 53/116 (45%), Gaps = 7/116 (6%) Query: 177 KKQIAYSFFVEENLEQR-LLKLIDYVIEEIEANKLQKEIKNKVHSKIDKTNKEYFLKEQL 235 + Y + EN + R IEE+E + +K+ + + K ++ +++ +EQ Sbjct: 45 ENDPQYRALMGENQDLRKREGQYQDKIEELEKERKEKQERPERREKFERQHQDKHYQEQQ 104 Query: 236 KQIQAELGADTSREEELEEYRKKLDTKKKFMAED------AYKEIKKQIDKLSRMH 285 K+ Q E + +++L + ++ D ++ + D A KE++ + KL H Sbjct: 105 KKHQQEQQQLEAEKQKLAKEKQISDASRQGLNRDLEASRAAKKELEPKHQKLGTEH 160
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 29.0 bits (64), Expect = 0.036 Identities = 17/49 (34%), Positives = 27/49 (55%) Query: 331 EDMKEAQKRLEKLIEQEKRTQKMLDKNRKYDKELKQNTRKNLEELRAMM 379 ++++E +K LEK E +++ QK R+ KE + R NLE L M Sbjct: 139 KELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANLENLTNAM 187
>ARGDEIMINASE#Bacterial arginine deiminase signature. Length = 409 Score = 32.1 bits (73), Expect = 0.004 Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 10/89 (11%) Query: 124 LSYVLKQDADIEIKFINSNDESPQSLTNAMQTARAQGFNYFIAALTSNGANIMNSLVLSN 183 +S VL +E KFI+ + T+ YF + N + M S V++ Sbjct: 76 ISEVLVSSVALENKFISQFILEAEIKTDFTINLLKD---YFSSLTIDNMISKMISGVVTE 132 Query: 184 ELIYIPSV-------HSSFVITPKPNLIF 205 EL S + F+I P PN++F Sbjct: 133 ELKNYTSSLDDLVNGANLFIIDPMPNVLF 161
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 358 bits (919), Expect = e-120 Identities = 144/551 (26%), Positives = 260/551 (47%), Gaps = 51/551 (9%) Query: 8 KRLLLAALLSIVFFIVYDFFMPKRVLLEQNQTTMSQTIDQNKAPNTNQNTPKSNENL--A 65 +R LL L V F+++ + + Q T +++ + + Sbjct: 4 QRNLLVIALLFVSFMIWQAW--------EQDKNPQPQAQQTTQTTTTAAGSAADQGVPAS 55 Query: 66 SNETIATIKGLSYEAKIDKLG-RISKFYLTEEKYKTEDGDKIELVSQNPLPLELRFN--- 121 + ++K + I+ G + + L + +L+ +P + + Sbjct: 56 GQGKLISVKTDVLDLTINTRGGDVEQALLPAYPKELNSTQPFQLLETSPQFIYQAQSGLT 115 Query: 122 -----DNTLNADAFKVAYSSDASEIDASSEPKTIKLTQIL-DGVTITKNIKFYPNGRYEV 175 DN N DA + + +T G T TK G Y V Sbjct: 116 GRDGPDNPANGPRPLYNVEKDAYVLAEGQNELQVPMTYTDAAGNTFTKTFVLKR-GDYAV 174 Query: 176 EVNL------SKSVDYFI------TPGFRPNIAVDS-----YTVHGVMLRNTDDSLNIIE 218 VN K ++ + P++ S +T G D+ + Sbjct: 175 NVNYNVQNAGEKPLEISSFGQLKQSITLPPHLDTGSSNFALHTFRGAAYSTPDEKYEKYK 234 Query: 219 ---DGDAKEVKNYANTTIAAASDRYYTTLFYSFEKPFEVAVDKDASNN--------PILF 267 D + + + A +Y+ T + + N + Sbjct: 235 FDTIADNENLNISSKGGWVAMLQQYFATAWIPHNDGTNNFYTANLGNGIAAIGYKSQPVL 294 Query: 268 VKASEN--LKLGGYIGPKEHKILSSMDERLNDVIEYGWFTFIAKPMFAFLNFLHNYIGNW 325 V+ + + ++GP+ ++++ L+ ++YGW FI++P+F L ++H+++GNW Sbjct: 295 VQPGQTGAMNSTLWVGPEIQDKMAAVAPHLDLTVDYGWLWFISQPLFKLLKWIHSFVGNW 354 Query: 326 GWAIVVLTLVIRIVLFPLTYKGMLSMNKLKELAPKVKELQTKYKDDKQKMQVHMMELYKK 385 G++I+++T ++R +++PLT SM K++ L PK++ ++ + DDKQ++ MM LYK Sbjct: 355 GFSIIIITFIVRGIMYPLTKAQYTSMAKMRMLQPKIQAMRERLGDDKQRISQEMMALYKA 414 Query: 386 HGANPMGGCLPILLQIPVFFAIYRVLLNAIELKGAPWIVWIHDLSVMDPYFVLPILMGLT 445 NP+GGC P+L+Q+P+F A+Y +L+ ++EL+ AP+ +WIHDLS DPY++LPILMG+T Sbjct: 415 EKVNPLGGCFPLLIQMPIFLALYYMLMGSVELRQAPFALWIHDLSAQDPYYILPILMGVT 474 Query: 446 MFLQQKLTPTTFADPMQEKVMKFLPLIFTFFFVTFPAGLTLYWFVNNVCSVVQQVFVNKL 505 MF QK++PTT DPMQ+K+M F+P+IFT FF+ FP+GL LY+ V+N+ +++QQ + + Sbjct: 475 MFFIQKMSPTTVTDPMQQKIMTFMPVIFTVFFLWFPSGLVLYYIVSNLVTIIQQQLIYRG 534 Query: 506 FEKHKKSAEVK 516 EK + K Sbjct: 535 LEKRGLHSREK 545
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 40.1 bits (94), Expect = 1e-05 Identities = 41/209 (19%), Positives = 74/209 (35%), Gaps = 18/209 (8%) Query: 155 IVTVQKSSISNLRKAVNLAGVQLD----NIVLSGYASAIATLTKDEKELGAALVDMGGAT 210 +V V + R+A+ + ++ A+AI + G+ +VD+GG T Sbjct: 111 LVCVPVGATQVERRAIRESAQGAGAREVFLIEEPMAAAIGAGLPVSEATGSMVVDIGGGT 170 Query: 211 CNLVVHSGNSIRYNEFLPVGSANITNDL------SMALHTPLPKAEEIKLGYG-ALINKS 263 + V S N + Y+ + +G + + AE IK G A Sbjct: 171 TEVAVISLNGVVYSSSVRIGGDRFDEAIINYVRRNYGSLIGEATAERIKHEIGSAYPGDE 230 Query: 264 VDLIELP---ILGDETKSHEVSLDIISNVIYARAEETLMVLAKMLEDSG---YKDSIGAG 317 V IE+ + + ++ + I + + + LE D G Sbjct: 231 VREIEVRGRNLAEGVPRGFTLNSNEILEALQEPLTGIVSAVMVALEQCPPELASDISERG 290 Query: 318 IILTGGMTKLEGIRDLASAIFDKMPVRIA 346 ++LTGG L + L +PV +A Sbjct: 291 MVLTGGGALLRNLDRLLME-ETGIPVVVA 318
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 36.0 bits (83), Expect = 3e-04 Identities = 52/211 (24%), Positives = 84/211 (39%), Gaps = 23/211 (10%) Query: 193 QIINANQSDIKIDEKELKDLWETNKNNYMTKTIYG-LETYFIESNKNDVNQTTLSDYYNE 251 IN KI LK + +YG L T I + K ++ L++YY+E Sbjct: 310 NNINRCTKKDKILNNTLKKC-----EDKDIFKLYGELLTANIYALKKGLSHIELANYYSE 364 Query: 252 NKERYKGSDDKIKSFDEVKTEVIKDYNIEKSKTDALKKYTSIKKAELATNEFVSVNEDNA 311 N + K + D+ K+ + K YN K +A + + EL V N +NA Sbjct: 365 NYDTVKITLDENKTPSQNVQSYYKKYNKLKKSEEAANEQLLQNEEELNYLYSVLTNINNA 424 Query: 312 TFSLDEIKGAKVGEVIKPFTYKDGYLIVRV----KSITPPQPMSFEQARAMVLEIYKDKK 367 + DEI E IK + GY+ + K +PM F + + + K+ Sbjct: 425 D-NYDEI------EEIKKELIETGYIKFKKIYKSKKSKTSKPMHFISKDGIDIYVGKNNI 477 Query: 368 KKENLTTMAKESLQNFKGTDIGFISRDINSS 398 + + LT L+ DI F +++I S Sbjct: 478 QNDYLT------LKFANKHDIWFHTKNIPGS 502
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 90.7 bits (225), Expect = 2e-23 Identities = 36/117 (30%), Positives = 58/117 (49%) Query: 3 RILLVEDDEILLDLISEYLSENGYDVTTSDNAKEALDLAYEQNFDLLILDVKLPQGDGFS 62 IL+ +DD + ++++ LS GYDV + NA + DL++ DV +P + F Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 63 LLSSLRELGVSAPSIFTTSLNTIDDLEKGYKSGCDDYLKKPFELKELLIRIQALLKR 119 LL +++ P + ++ NT K + G DYL KPF+L EL+ I L Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 87.1 bits (216), Expect = 3e-26 Identities = 39/87 (44%), Positives = 51/87 (58%) Query: 3 KAEFIQAVADKAGLSKKDTLKVVDATLETIQAVLEKGDTISFIGFGTFGTADRAARKARV 62 K + I VA+ L+KKD+ VDA + + L KG+ + IGFG F +RAARK R Sbjct: 4 KQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGRN 63 Query: 63 PGTKKVIDVPASKAVKFKVGKKLKEAV 89 P T + I + ASK FK GK LK+AV Sbjct: 64 PQTGEEIKIKASKVPAFKAGKALKDAV 90
>FLAGELLIN#Flagellin signature. Length = 507 Score = 56.2 bits (135), Expect = 3e-10 Identities = 60/344 (17%), Positives = 112/344 (32%), Gaps = 23/344 (6%) Query: 11 QTLNDYQKNMTGVNKSYKQLSNGLKIQDPYDGAATYNDAMRLDYEATTLTQVVDATGKSV 70 LN Q ++ + + ++LS+GL+I D AA A R LTQ + Sbjct: 15 NNLNKSQSSL---SSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQASRNANDGI 71 Query: 71 NFSKNTDNALQEFEKQLENFKTKVVQAASSVHSKTSLEALANDLQGIKNHLVNIAN-TSV 129 + ++ T+ AL E L+ + VQA + +S + L+++ +++Q + ++N T Sbjct: 72 SIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEIDRVSNQTQF 131 Query: 130 NGQFLFSGSAVDTKPIDGAGKYQGNRDYMKTSAGAQVELPYNIPGYDLFLGKDGDYSKIL 189 NG + S + GA + ++ + L Sbjct: 132 NGVKVLSQDNQMKIQV-GANDGETITIDLQKIDVKSLGL-----------------DGFN 173 Query: 190 TTNVRLADQTRTDISYAPKFLNDNSKIKNMIGLNYASDSVVRSDGSYNGTINPDYDFLDN 249 + A S+ D + + V +D + + Y N Sbjct: 174 VNGPKEATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAAN 233 Query: 250 SNVNFPDTYFFMQGKKPDGTTFTSKFKMSANTTMAGLMEKIGMEFGNTKTTKVVDVSINN 309 + D T T+ + A K G F T +D N Sbjct: 234 GQLTTDDAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGN 293 Query: 310 DGQFNIKDLTKGNQTIDFHMVAATSVAPNRGAIAQNNALDTVNS 353 DG + T + + + T+ A N A ++ + S Sbjct: 294 DGNGKVST-TINGEKVTLTVADITAGAANVDAATLQSSKNVYTS 336 Score = 37.3 bits (86), Expect = 2e-04 Identities = 25/201 (12%), Positives = 52/201 (25%), Gaps = 6/201 (2%) Query: 565 NAYKEALSKTKGTVETTLDDRGRMVLTDKTKSVTNIEVTMHDAKNSDKFDGDSTGRDTAG 624 +D + SV N + T D + + + + Sbjct: 305 GEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTF------DDKTKNESAKLSDL 358 Query: 625 NAGHPQGKGSVFSFNENNALTIDEPSTSVFQDLDNMIEAVRKGYYRADANSNDPRNTGMQ 684 A + S + N I+ G Sbjct: 359 EANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINEDAAAAKKSTA 418 Query: 685 GALQRLDHLIDHANKELTKIGSQSRLLTATKERAEVMKVNVQTVKNDVIDADYAESYLKF 744 L +D + + + +G+ + N+ + ++ + DADYA Sbjct: 419 NPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIEDADYATEVSNM 478 Query: 745 TQLSLSYQATLQASAKINQLS 765 ++ + QA A+ NQ+ Sbjct: 479 SKAQILQQAGTSVLAQANQVP 499
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 106 bits (265), Expect = 4e-27 Identities = 55/284 (19%), Positives = 116/284 (40%), Gaps = 36/284 (12%) Query: 127 SSNSVFFRADDYIFDQIKEAISKIDKSLEQVTFKLTITETNLKDIKDLGTN----LKGLL 182 +N++ A + + ++ I+++D QV + I E D +LG G+ Sbjct: 317 QTNALIVTAAPDVMNDLERVIAQLDIRRPQVLVEAIIAEVQDADGLNLGIQWANKNAGMT 376 Query: 183 KPLNHGDLAYYINL-----------ITSPYITNSNIIKNDDRAFFG-----ILNFLDTNG 226 + N G L + ++S + + F+ +L L ++ Sbjct: 377 QFTNSG-LPISTAIAGANQYNKDGTVSSSLASALSSFNGIAAGFYQGNWAMLLTALSSST 435 Query: 227 ITKIISSPVLTAKNHTEVYFSSVQNIPYLVSKTDISNLNYQKTDSYEYKDIGLKINLKPI 286 I+++P + ++ E F+ Q +P L S N ++ E K +G+K+ +KP Sbjct: 436 KNDILATPSIVTLDNMEATFNVGQEVPVLTGSQTTSGDN--IFNTVERKTVGIKLKVKPQ 493 Query: 287 ILSDHIDFDLHLILEDILSQ--------STSLTPIVSKKELKSSYSLKRGDVLVLSGINK 338 I + L +E +S S+ L + + + ++ + G+ +V+ G+ Sbjct: 494 INEGD---SVLLEIEQEVSSVADAASSTSSDLGATFNTRTVNNAVLVGSGETVVVGGLLD 550 Query: 339 TTTSKQRNGVPILKDIWFLKYLFS--VEQDSEINSVLTLTIQII 380 + S + VP+L DI + LF ++ S+ N +L + +I Sbjct: 551 KSVSDTADKVPLLGDIPVIGALFRSTSKKVSKRNLMLFIRPTVI 594
>cloacin#Cloacin signature. Length = 551 Score = 54.3 bits (130), Expect = 6e-10 Identities = 32/68 (47%), Positives = 33/68 (48%), Gaps = 5/68 (7%) Query: 288 NTTPGGGGSSGGGSSGGTGGGSSGGNNGGSSG---GTGGGSSGGNNQGNGGQGGGQGNNG 344 N P G G GG S G+G S GG SG GGGS GN GNG GGG G G Sbjct: 21 NGGPTGLGVGGGASD-GSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGG 79 Query: 345 N-SENATP 351 N S A P Sbjct: 80 NLSAVAAP 87 Score = 46.6 bits (110), Expect = 1e-07 Identities = 25/67 (37%), Positives = 31/67 (46%), Gaps = 6/67 (8%) Query: 292 GGGGSSGGGSSGG-TGGGSSGGNNGGSSGGT-----GGGSSGGNNQGNGGQGGGQGNNGN 345 G S+ G +GG TG G GG + GS + GGGS G + G G G G NGN Sbjct: 11 TGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGN 70 Query: 346 SENATPG 352 S + Sbjct: 71 SGGGSGT 77 Score = 41.2 bits (96), Expect = 7e-06 Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 8/84 (9%) Query: 292 GGGGSSGGGSSGGT--GGGSSGGNNGGSSGGTGGGSS-----GGNNQGNG-GQGGGQGNN 343 G G ++G S+ G GG + G GG+S G+G S GG+ G G G G GN Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 344 GNSENATPGNIDYGELEERTADLA 367 G + N+ G+ G L A +A Sbjct: 66 GGNGNSGGGSGTGGNLSAVAAPVA 89 Score = 40.1 bits (93), Expect = 2e-05 Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 2/42 (4%) Query: 287 DNTTPGGGGSSGGGSSGGTGGGSSGGNN--GGSSGGTGGGSS 326 +N GGG SG GG+G G+ GGN GG SG G S+ Sbjct: 42 ENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSA 83 Score = 33.5 bits (76), Expect = 0.002 Identities = 12/43 (27%), Positives = 14/43 (32%) Query: 279 DPSKDKDKDNTTPGGGGSSGGGSSGGTGGGSSGGNNGGSSGGT 321 +P GGG G G G GG SG S+ Sbjct: 44 NPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAA 86 Score = 30.8 bits (69), Expect = 0.014 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%) Query: 292 GGGGSSGGGSSGGTGGG-SSGGNNGGSSGGTGGGSSGGNNQGNGGQG 337 GG G GG +G +GGG +GGN + G + G GG Sbjct: 58 GGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 29.7 bits (66), Expect = 0.029 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%) Query: 302 SGGTGGGSSGGNNGGSSGGTGGGSSGGNNQGNGGQGGGQGNNGN 345 SGG G G + G + +SG GG +G G G G + N Sbjct: 2 SGGDGRGHNTGAHS-TSGNINGGPTGLGVGGGASDGSGWSSENN 44
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 28.2 bits (63), Expect = 0.033 Identities = 12/50 (24%), Positives = 24/50 (48%) Query: 98 EILKDDIFINEIKKEEKEEKEQKEEKQENFRDKFKAEYRTNDGHYVRSRA 147 +L D ++ IK + + E+ E + D F + + + D Y++ RA Sbjct: 79 LVLDDPELVDGIKGKIENEQMNAEYALKEVSDMFVSMFESMDNEYMKERA 128
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 138 bits (350), Expect = 1e-40 Identities = 76/347 (21%), Positives = 142/347 (40%), Gaps = 44/347 (12%) Query: 7 KIVITGGAGFIGSALAHYFDENYKDAHVLVVDKFRN--DETFSNGNLKSFGHFKNLLGFK 64 K ++TG AGFIG ++ E V+ +D + D + L+ GF+ Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQ--VVGIDNLNDYYDVSLKQARLELLAQ----PGFQ 55 Query: 65 GEIYAGDINNPSTLEKI-KSFCPDVIYHEAAISDT--TVKEQDELIKTNVNAFVNLLDIC 121 + D+ + + + S + ++ +++ +N+ F+N+L+ C Sbjct: 56 --FHKIDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGC 113 Query: 122 ESLGAK-MIYASSGATYG-NAKSP-QTVGECEAPNNVYGFSKLSMDNINKIYAK-RGVSV 177 + ++YASS + YG N K P T + P ++Y +K + + + Y+ G+ Sbjct: 114 RHNKIQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPA 173 Query: 178 VGLRYFNVFGKGEFFKNKTASMVLQFGLQILAGKTPRLFEGSDQIKRDFVYIKDIIDANI 237 GLR+F V+G + + +F +L GK+ ++ ++KRDF YI DI +A I Sbjct: 174 TGLRFFTVYGP----WGRPDMALFKFTKAMLEGKSIDVY-NYGKMKRDFTYIDDIAEAII 228 Query: 238 KALD--------------------APSGVYNAATGKARSFQDIADILQREIGVNLGNEYI 277 + D AP VYN D L+ +G+ + Sbjct: 229 RLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNML 288 Query: 278 KNPFIGSYQFHTEADVAPAREAFGFSATWSLEEAIKDYLPEIKRIYK 324 G T AD E GF+ ++++ +K+++ + YK Sbjct: 289 P-LQPGDVL-ETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDFYK 333
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 35.2 bits (81), Expect = 6e-04 Identities = 43/207 (20%), Positives = 74/207 (35%), Gaps = 54/207 (26%) Query: 188 VLMIGPPGVGKTLVAKAV---AGEANVPFFYQNGASF-----------VQIYVGMGAKRV 233 +++ G G GK LVA+A+ N PF N A+ + GA+ Sbjct: 163 LMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTR 222 Query: 234 RE-LFSKAKSYAPSIIFIDEIDAVGKSRGGTRNDEREATLNQLLTEMDGFEDNSG----- 287 F +A+ +F+DEI G + + L ++L + + + G Sbjct: 223 STGRFEQAEG---GTLFLDEI--------GDMPMDAQTRLLRVLQQGE-YTTVGGRTPIR 270 Query: 288 --VIVIAATNRIEMID-EALLRSGRFDRRIF-------LSMPDFNDR---VAILNTYLKD 334 V ++AATN+ D + + G F ++ L +P DR + L + Sbjct: 271 SDVRIVAATNK----DLKQSINQGLFREDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQ 326 Query: 335 KKCDVSAEDIARMSVGFSGAALSTLVN 361 + AE F AL + Sbjct: 327 Q-----AEKEGLDVKRFDQEALELMKA 348
>PF04183#IucA / IucC family Length = 580 Score = 27.9 bits (62), Expect = 0.034 Identities = 9/30 (30%), Positives = 17/30 (56%), Gaps = 3/30 (10%) Query: 34 LLRAKGLDEAKFYDFARVVAQICENYRKKF 63 L+ G+ E +FY +++A + +Y KK Sbjct: 495 LMVRLGVPERRFY---QLLAAVLSDYMKKH 521
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 24.3 bits (52), Expect = 0.047 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 3/47 (6%) Query: 12 ELENDINVYDFLAQNGYELKFIALERDGEILPKKLWRERFMSEGKAY 58 E++N I+ +FLAQN +L ++ E++ E ++ + F + KAY Sbjct: 392 EIQNKIDFMEFLAQNNAKLDNLS-EKEKEKFRTEI--KDFQKDSKAY 435
>PF06580#Sensor histidine kinase Length = 349 Score = 31.0 bits (70), Expect = 0.002 Identities = 11/43 (25%), Positives = 26/43 (60%), Gaps = 3/43 (6%) Query: 68 AKTLKFKEEIDLID---ELYNISFEDLLKFVKNIDESLDEIFI 107 A+ + +E+ ++D +L +I FED L+F I+ ++ ++ + Sbjct: 213 ARQVSLADELTVVDSYLQLASIQFEDRLQFENQINPAIMDVQV 255
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 29.3 bits (65), Expect = 0.041 Identities = 25/132 (18%), Positives = 69/132 (52%), Gaps = 7/132 (5%) Query: 248 NIKTLQQEVNDIDENSKKIDEISKLTTQNVENFKKVLSEFNANAQNTAQTSKYVENKTFA 307 N +++ D++++ +K + + K + +E+ ++ A AQ +Q +++ FA Sbjct: 603 NYDEVKKAQKDLEKSLRKREHLEKEVEKKLESKSGNKNKMEAKAQANSQ-----KDEIFA 657 Query: 308 IIAKISQIAYKTKVYSDLIN--EQGYSEEIRDLAQSLLDWYENESISEHNQNKNFDKSKE 365 +I K + + Y+ + ++ S+++ ++ ++L D+ ++ ++ +NK+F K++E Sbjct: 658 LINKEANRDARAIAYAQNLKGIKRELSDKLENVNKNLKDFDKSFDEFKNGKNKDFSKAEE 717 Query: 366 LTASLNNEIKPL 377 +L +K L Sbjct: 718 TLKALKGSVKDL 729
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 223 bits (571), Expect = 3e-71 Identities = 96/408 (23%), Positives = 193/408 (47%), Gaps = 8/408 (1%) Query: 1 MKFYEIEYIK-DGKRQKMSLKANSKNDVKNRANIQGMI-VKIKETQVSSINNYFLDLQEK 58 M Y + + GK+ + + +A+S + +G++ + + E + + L + Sbjct: 1 MAQYHYQALDAQGKKCRGTQEADSARQARQLLRERGLVPLSVDENRGDQQKSGSTGLSLR 60 Query: 59 FNKIFSSSKVKIPALVATIRQLSVMTNAGISIHDGIKETANATEDKRLKTIFQTLDEDLN 118 S+S L RQL+ + A + + + + A +E L + + + Sbjct: 61 RKIRLSTS-----DLALLTRQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVM 115 Query: 119 QGASLTQSIENFQEELGDVTVAMVRLGESTGNMADALSKLASILQEVWDNQQKFKKAIRY 178 +G SL +++ F + AMV GE++G++ L++LA ++ + + ++A+ Y Sbjct: 116 EGHSLADAMKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIY 175 Query: 179 PITVICSIILAFIVLMTSVVPQFREIFSQLNADLPLPTKILLNIEYIMSNYGIYIIVVLV 238 P + I +L++ VVP+ E F + LPL T++L+ + + +G ++++ L+ Sbjct: 176 PCVLTVVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLALL 235 Query: 239 TFVFLLKRQYSNDENFRDKVDKYLLKVYLVGKIIFFANMSRFNLIFTELVRAGLPIADAL 298 R E R + LL + L+G+I N +R+ + L + +P+ A+ Sbjct: 236 AGFMAF-RVMLRQEKRRVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAM 294 Query: 299 DTAVVTVSNQDIRNKLTAVKVLVGRGISLTEAFRQTGLYEGMLIQMIGAGEQSGSLDDMT 358 + +SN R++L+ V G+SL +A QT L+ M+ MI +GE+SG LD M Sbjct: 295 RISGDVMSNDYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMIASGERSGELDSML 354 Query: 359 QKVTDYYRVKFNDIIDNISNYIEPILLIFIAAMVLLLALGIFMPMWDM 406 ++ D +F+ + EP+L++ +AA+VL + L I P+ + Sbjct: 355 ERAADNQDREFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPILQL 402
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 157 bits (398), Expect = 1e-43 Identities = 64/289 (22%), Positives = 133/289 (46%), Gaps = 18/289 (6%) Query: 202 NAGLITVTATPSQLKRVEKYIDEMQKRLKKQVIIDVSIISVELNNEYKQGVDWSKFELGF 261 + VTA P + +E+ I ++ R + QV+++ I V+ + G+ W+ G Sbjct: 317 QTNALIVTAAPDVMNDLERVIAQLDIR-RPQVLVEAIIAEVQDADGLNLGIQWANKNAGM 375 Query: 262 NTYIGNSRNNPSSSA---TWTNKGNSLSDGFGRTLN----IAANLNFSLDGMINFLETNG 314 + + ++ A + G S + A + ++ L ++ Sbjct: 376 TQFTNSGLPISTAIAGANQYNKDGTVSSSLASALSSFNGIAAGFYQGNWAMLLTALSSST 435 Query: 315 KTKVISSPKVTTLNNQQALISVGDNINYRVQQKTDNGNSNSDRLTTTYKQYSVFIGILLN 374 K ++++P + TL+N +A +VG + +T +G D + T ++ +V GI L Sbjct: 436 KNDILATPSIVTLDNMEATFNVGQEVPVLTGSQTTSG----DNIFNTVERKTV--GIKLK 489 Query: 375 LLPEVSDNNKIMLRINPSLSNFKYAEDDTRQNALREIAPDTVQKKLSTVVQVDSGDTIIL 434 + P++++ + ++L I +S+ D + ++ + ++ V V SG+T+++ Sbjct: 490 VKPQINEGDSVLLEIEQEVSSV----ADAASSTSSDLGATFNTRTVNNAVLVGSGETVVV 545 Query: 435 GGLIGQTKGKNNTSVPLLSDIPLIGGVFKSTRDNIKTTELIFVITPHVV 483 GGL+ ++ VPLL DIP+IG +F+ST + L+ I P V+ Sbjct: 546 GGLLDKSVSDTADKVPLLGDIPVIGALFRSTSKKVSKRNLMLFIRPTVI 594
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 29.4 bits (66), Expect = 0.029 Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 3/33 (9%) Query: 51 NILMIGSTGVGKTEIAR---RLSKMMGLPFIKV 80 +++ G +G GK +AR K PF+ + Sbjct: 162 TLMITGESGTGKELVARALHDYGKRRNGPFVAI 194
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 35.5 bits (81), Expect = 0.002 Identities = 28/122 (22%), Positives = 49/122 (40%), Gaps = 9/122 (7%) Query: 660 GVPISVNNGTIETTTRLYGLTTNFTNTFTDKAGNKAAPVTDKITLDNSIKVQFARDNDGD 719 G+P SVN + + L TN + TD +++ ++ V+ A N Sbjct: 336 GLPPSVNLNAVAKASGTVDLPMRLTNEARGNTTTLSVVSTDGVSVPKAVPVRMAAYNATT 395 Query: 720 GLIDSITTPSGSPSTQSDLDIYLPNNTKPGSNINVTISTPTIPSVTTTVRYTISDDGLTA 779 GL + +T PS + + + P + P N N + +TP +P + +G T Sbjct: 396 GLYE-VTVPSTTAEAPPLILTWTPAS--PPGNQNPSSTTPVVP------KPVPVYEGATL 446 Query: 780 VP 781 P Sbjct: 447 TP 448
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 28.6 bits (64), Expect = 0.021 Identities = 18/111 (16%), Positives = 43/111 (38%), Gaps = 12/111 (10%) Query: 91 FSVFDVVMMSANARLGIFERPSKKYEMIALDVLKTLNLESFKDKIYTDLSGGERQMVLIA 150 F D+V++ + + + AL ++KI+ ++S +R ++ Sbjct: 245 FVFEDIVLLDDRSIQRVLREIDGQELAKALKS----VDIPVQEKIFKNMS--KRAASMLK 298 Query: 151 RALAQRSKVMLLDEPTANLDFGNQMRVLKEIKKLAKQGYIIILTSHQPEQV 201 + D + Q +++ I+KL +QG I+I + + + Sbjct: 299 EDMEFLGPTRRKDVEES------QQKIVSLIRKLEEQGEIVISRGGEEDVL 343
>PF05211#Neuraminyllactose-binding hemagglutinin Length = 260 Score = 26.9 bits (59), Expect = 0.008 Identities = 10/23 (43%), Positives = 16/23 (69%) Query: 52 MQKIDTQFALESLEVYQKIADDM 74 MQ+ID + ++LE YQK A ++ Sbjct: 232 MQEIDKKLTQKNLESYQKDAKEL 254
>ENTEROVIROMP#Enterobacterial virulence outer membrane protein signature. Length = 171 Score = 27.6 bits (61), Expect = 0.030 Identities = 25/133 (18%), Positives = 47/133 (35%), Gaps = 6/133 (4%) Query: 74 YYSGTFYSLNKALSALYADAKVKEWFDYA-GLPYHFKLELDASKNGV-SPQTLKRSDEII 131 + +GT + ++ YA + + + G ++ E D S GV T Sbjct: 16 FTAGTSVAATSTVTGGYAQSDAQGQMNKMGGFNLKYRYEEDNSPLGVIGSFTYTEKSRTA 75 Query: 132 NTYKNVRSVYDGASIKATASINLKAYSYTFSGES---ISVDPYVISNINEHAH-FKFGAT 187 ++ ++ Y G + IN A Y G Y + + F +GA Sbjct: 76 SSGDYNKNQYYGITAGPAYRINDWASIYGVVGVGYGKFQTTEYPTYKHDTSDYGFSYGAG 135 Query: 188 TQINEIISIPIDA 200 Q N + ++ +D Sbjct: 136 LQFNPMENVALDF 148
>adhesinb#Adhesin B signature. Length = 310 Score = 28.7 bits (64), Expect = 0.026 Identities = 11/32 (34%), Positives = 18/32 (56%) Query: 1 MRKLKFFLLALVATVFLTGCGDDKGADKAAAS 32 M+K +F +L L+A V L C K + + +S Sbjct: 1 MKKCRFLVLLLLAFVGLAACSSQKSSTETGSS 32
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 48.0 bits (114), Expect = 5e-10 Identities = 17/58 (29%), Positives = 37/58 (63%) Query: 2 KRRAYTLLELIFIVVILGILSTVAIPRLFFSRSDATISNAKTQLAAIRSGISLKYNDN 59 K+R +TLLE++ ++VI+G+L+++ +P L ++ A A + + A+ + + + DN Sbjct: 6 KQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKLDN 63
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 128 bits (324), Expect = 5e-38 Identities = 65/276 (23%), Positives = 117/276 (42%), Gaps = 37/276 (13%) Query: 7 FFAVFTFVLGICVGSFSNVLIYRLPK------------------------NESINFPASH 42 + F+ + +GSF NV+I+RLP ++ P S Sbjct: 14 LYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRSYFNPDDEGVDEPPYNLMVPRSC 73 Query: 43 CPNCDHKLNFYHNVPIFSWIFLGGKCAFCKQKISLIYPAIELVSGILFLICFFKECGEIL 102 CP+C+H + N+P+ SW++L G+C C+ IS YP +EL++ +L + Sbjct: 74 CPHCNHPITALENIPLLSWLWLRGRCRGCQAPISARYPLVELLTALLSVAVAMT------ 127 Query: 103 SIETLLYALFLGLCFIMLLALSVIDIRYKAVPDPLLFAALFFAFIYALMLFIVKGNFAQI 162 + L L +L+AL+ ID+ +PD L L+ ++ L+ V A + Sbjct: 128 -LAPGWGTLAALLLTWVLVALTFIDLDKMLLPDQLTLPLLWGGLLFNLLGGFVSLGDA-V 185 Query: 163 LNLFLFALIFWVLRFVVSFAIKKEAMGSADIFIAAIIGAILPAKLALVAIYLAALFTLPV 222 + L+ W L + KE MG D + A +GA L + + + L++L + Sbjct: 186 IGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSLVGAFM 245 Query: 223 YALVQK-----KGYELAFVPFLSLGLLIAYAFKEQI 253 + + + F P+L++ IA + + I Sbjct: 246 GIGLILLRNHHQSKPIPFGPYLAIAGWIALLWGDSI 281
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 39.1 bits (91), Expect = 3e-06 Identities = 12/30 (40%), Positives = 24/30 (80%) Query: 1 MHKNKGFTVIELIFVIIAVGILAAMIIPRL 30 K +GFT++E++ VI+ +G+LA++++P L Sbjct: 4 TDKQRGFTLLEIMVVIVIIGVLASLVVPNL 33
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 62.9 bits (153), Expect = 3e-13 Identities = 24/113 (21%), Positives = 54/113 (47%), Gaps = 7/113 (6%) Query: 2 KILIVENEIYLAGSMASKLADFGYDCEIAKSVKEALKF---ENFDVVLLSTTLPGQDFYP 58 IL+ +++ + + L+ GYD I + ++ + D+V+ +P ++ + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 59 VIEKFKSS----IIILLIAYINSDTVLKPIQAGAVDYIQKPFMIEELVRKIKH 107 ++ + K + ++++ A T +K + GA DY+ KPF + EL+ I Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117 Score = 31.7 bits (72), Expect = 0.003 Identities = 7/27 (25%), Positives = 16/27 (59%) Query: 270 TELSKKLGISRKSLWEKRKKYDVSKKK 296 + + LG++R +L +K ++ VS + Sbjct: 453 IKAADLLGLNRNTLRKKIRELGVSVYR 479
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 48.2 bits (115), Expect = 4e-08 Identities = 40/168 (23%), Positives = 63/168 (37%), Gaps = 39/168 (23%) Query: 1 MRIAIINGTIVNSDEKFKANILIENGKIAKIGSEKF------------EADKVIDATNKL 48 + I N I++ KA+I +++G+IA IG +VI K+ Sbjct: 68 VDTVITNALILDHWGIVKADIGLKDGRIAAIGKAGNPDMQPGVTIIVGPGTEVIAGEGKI 127 Query: 49 VMPGLIDMHVHFRDPGQEYKDDIISGSEAAVAGGVTTCLCMANTNPVNDNASIT------ 102 V G +D H+HF P Q E A+ G+T + T P + + T Sbjct: 128 VTAGGMDSHIHFICPQQ---------IEEALMSGLTC-MLGGGTGPAHGTLATTCTPGPW 177 Query: 103 --RAMIEKAKNCGLIDLLPI--AAISKGLGGNEIVEMGDLIEAGAVAF 146 MIE A D P+ A KG + +++ GA + Sbjct: 178 HIARMIEAA------DAFPMNLAFAGKGNASLP-GALVEMVLGGATSL 218
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 42.5 bits (100), Expect = 1e-06 Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 6/96 (6%) Query: 115 IETARLKAELKAGKIVVVAGFQGI---DEKGNITTL-GRGGSDLSAVALAGALDADLCEI 170 +E +K ++ G IV+ +G G+ E G I + DL+ LA ++AD+ I Sbjct: 174 VEAETIKKLVERGVIVIASGGGGVPVILEDGEIKGVEAVIDKDLAGEKLAEEVNADIFMI 233 Query: 171 FTDVDGVYTTDPRIEKKAKKLEQISYDEMLELASAG 206 TDV+G +K + L ++ +E+ + G Sbjct: 234 LTDVNGAALYYGT--EKEQWLREVKVEELRKYYEEG 267
>PF06580#Sensor histidine kinase Length = 349 Score = 31.0 bits (70), Expect = 0.006 Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 15/85 (17%) Query: 269 QRIIDNTIINAIKYSPKESEILINLSFENERIKLSVQDFGKGIKDVKKVWKRYVREDEIQ 328 Q +++N I + I P+ +IL+ + +N + L V++ G + Sbjct: 261 QTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLAL------------KNTK 308 Query: 329 GGFGLGLNIVSEICQKHGILYGVDS 353 G GL V E Q +LYG ++ Sbjct: 309 ESTGTGLQNVRERLQ---MLYGTEA 330
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 86.4 bits (214), Expect = 8e-22 Identities = 27/107 (25%), Positives = 49/107 (45%) Query: 2 KILLLEDDLGFQESVCEFLQTLGYEVTAVSDGQEACDLIEKNFYHLFILDIKVPGVNGHE 61 IL+ +DD + + + L GY+V S+ I L + D+ +P N + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 VIKYIRSLNPNAPIMITTSLVDIGDMAIGYELGCNEYLKKPFELAEL 108 ++ I+ P+ P+++ ++ E G +YL KPF+L EL Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTEL 111
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 145 bits (368), Expect = 4e-43 Identities = 70/334 (20%), Positives = 130/334 (38%), Gaps = 41/334 (12%) Query: 1 MKILITGGAGYIGSHVVKALLKQGKDEITIIDNLCKGSQKALE----ALQKIGNFKFINA 56 MK L+TG AG+IG HV K LL+ G ++ IDNL +L+ L F+F Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAG-HQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKI 59 Query: 57 NLED--DLSEIFANGKFDAIIHFAAFIEVFESMSEPLKYYLNNTANVARVLRYAKTYNVN 114 +L D ++++FA+G F+ + + V S+ P Y +N +L + + Sbjct: 60 DLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQ 119 Query: 115 KFIFSSTAAVYGEPDVAEVSETTPT-IPINPYGRSKLMSEQIIKDYAASNKNFKFAILRY 173 +++S+++VYG S P++ Y +K +E + Y+ LR+ Sbjct: 120 HLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSH-LYGLPATGLRF 178 Query: 174 FNVAGADEEGLIGQNYPNATHLIKVAVQTILGKRESMGIFGDDYATKDGTCVRDYIHVSD 233 F V G G T + + +S+ ++ G RD+ ++ D Sbjct: 179 FTVYG--PWGRPDMALFKFTKAML--------EGKSIDVYN------YGKMKRDFTYIDD 222 Query: 234 LADAHISALEYIGQN----------------GSETFNVGYGRGFSVKEVIETAKKVSEVN 277 +A+A I + I +N+G + + I+ + + Sbjct: 223 IAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIE 282 Query: 278 FKVQNAPRRDGDPAILISNASKLRSLTSWKPKRD 311 K P + GD ++ L + + P+ Sbjct: 283 AKKNMLPLQPGDVLETSADTKALYEVIGFTPETT 316
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 515 bits (1329), Expect = 0.0 Identities = 201/350 (57%), Positives = 244/350 (69%), Gaps = 16/350 (4%) Query: 1 MKILVTGTAGFIGFHLANALVKRGDEVVGYDVINDYYDVNLKLERLKTAGFDTSEIDYGK 60 MK LVTG AGFIGFH++ L++ G +VVG D +NDYYDV+LK RL+ Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLA---------- 50 Query: 61 LITSKTHPNLKFIKADLADEKTMKELFAKEKFDVVVNLAAQAGVRYSLINPKAYIDSNIT 120 P +F K DLAD + M +LFA F+ V + VRYSL NP AY DSN+T Sbjct: 51 ------QPGFQFHKIDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLT 104 Query: 121 GFVNILECCRHNEIKNLVYASSSSVYGLNENMPFSTHEAVNHPISLYAATKKSNEMMAHT 180 GF+NILE CRHN+I++L+YASSSSVYGLN MPFST ++V+HP+SLYAATKK+NE+MAHT Sbjct: 105 GFLNILEGCRHNKIQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHT 164 Query: 181 YSHLFNVPTTGLRFFTVYGPWGRPDMALFLFVDAALKDKTIDVFNYGKMKRDFTYVDDIV 240 YSHL+ +P TGLRFFTVYGPWGRPDMALF F A L+ K+IDV+NYGKMKRDFTY+DDI Sbjct: 165 YSHLYGLPATGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIA 224 Query: 241 KGIIKCIDNPAKPNPAWDAKHPDPATSKAPFKVYNIGNNSPVELMDYIKAVEIKIGREIK 300 + II+ D + W + PA S AP++VYNIGN+SPVELMDYI+A+E +G E K Sbjct: 225 EAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAK 284 Query: 301 KNFLPLQAGDVPATFADVNDLVADFDYKPNTKVNDGVAKFVEWYCEFYGV 350 KN LPLQ GDV T AD L + P T V DGV FV WY +FY V Sbjct: 285 KNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDFYKV 334
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 69.7 bits (170), Expect = 3e-16 Identities = 63/259 (24%), Positives = 112/259 (43%), Gaps = 21/259 (8%) Query: 3 LKGKKGLIVGVANAKSIAYGIAEACHAQGAQ-MAFTYLNDALKKRVEPIAEEFGSKFVYE 61 ++GK I G A + I +A +QGA A Y + L+K V + E + Sbjct: 6 IEGKIAFITGAA--QGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFP 63 Query: 62 LDVNNPAHLDGLADRIKKDLGEIDFVVHAVAYAPKEALEGEFVNTTKEAFDIAMGTSVYS 121 DV + A +D + RI++++G ID +V+ + + + E ++ + Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIH----SLSDEEWEATFSVNSTG 119 Query: 122 LLSLTRAVLPVLK--EGGSVLTLTYLGGPKFVPHYNV--MGVAKAALESSVRYLAHDLGA 177 + + +R+V + GS++T+ P VP ++ +KAA + L +L Sbjct: 120 VFNASRSVSKYMMDRRSGSIVTVG--SNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAE 177 Query: 178 KNIRVNAISAGPIKT-----LAASGIGDFRMILRYNE---VNSPLKRNVTTEDVGNSAMY 229 NIR N +S G +T L A G ++I E PLK+ D+ ++ ++ Sbjct: 178 YNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLF 237 Query: 230 LLSDLASGVTGEVHYVDCG 248 L+S A +T VD G Sbjct: 238 LVSGQAGHITMHNLCVDGG 256
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 78.7 bits (194), Expect = 4e-19 Identities = 35/112 (31%), Positives = 57/112 (50%) Query: 2 RILIVEDEVTLNKTIAEGLQEFGYQTDSSENFKDAEYYIGIRNYDLVLTDWMLQDGDGVD 61 IL+ +D+ + + + L GY + N +I + DLV+TD ++ D + D Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 LINIIKHKSPRTSVVVLSAKDDKESEIKALRAGADDYIKKPFDFDILVARLE 113 L+ IK P V+V+SA++ + IKA GA DY+ KPFD L+ + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116
>PF06580#Sensor histidine kinase Length = 349 Score = 37.9 bits (88), Expect = 5e-05 Identities = 19/98 (19%), Positives = 39/98 (39%), Gaps = 11/98 (11%) Query: 286 IKLDLKPEILNLKIQTSLLTHIVQNFVQNAIKFSPKNSTITISSKLIKNKFIIEVIDEGI 345 + + P I+++++ L+ +V+N +++ I P+ I + +EV + G Sbjct: 242 FENQINPAIMDVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGS 301 Query: 346 GIDESKDLFAPFKRYGDKGGAGLGLFLVKGAAQALGGE 383 ++ K G GL V+ Q L G Sbjct: 302 LALKN-----------TKESTGTGLQNVRERLQMLYGT 328
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 35.5 bits (82), Expect = 3e-04 Identities = 20/55 (36%), Positives = 29/55 (52%) Query: 114 EEATFGAIAAKNLLHNIAECVTIDIGGGSTELARISKGKIIDTLSLDIGTVRLKE 168 EE AI A + + +DIGGG+TE+A IS ++ + S+ IG R E Sbjct: 142 EEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNGVVYSSSVRIGGDRFDE 196
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 94.6 bits (235), Expect = 1e-28 Identities = 30/85 (35%), Positives = 48/85 (56%) Query: 14 GLFKSYDELMDISVDFIAELGTTTVSINELLKFEAGSVIDLEKPAGESVELYINNRIFGK 73 G + D +MDI V ELG T ++I ELL+ GSV+ L+ AGE +++ IN + + Sbjct: 49 GAMQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQ 108 Query: 74 GEVMVYEKNLAIRINEILDSKSVIQ 98 GEV+V +RI +I+ ++ Sbjct: 109 GEVVVVADKYGVRITDIITPSERMR 133
>SSPAMPROTEIN#Salmonella surface presentation of antigen gene type M signature. Length = 147 Score = 29.7 bits (66), Expect = 0.022 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 2/60 (3%) Query: 309 FSNVRKMDILIKREIHIKKVLNNQIESKVKELEETNRHLQRISKYDYLTNALNRQYFIAR 368 ++ +RK I ++R+I ++ QI+ K ELE+ Q SKY +L N Q +I R Sbjct: 69 YALLRKQSI-VRRQIKDLELQIIQIQEKRSELEKKREEFQEKSKY-WLRKEGNYQRWIIR 126
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 48.7 bits (116), Expect = 2e-08 Identities = 39/167 (23%), Positives = 68/167 (40%), Gaps = 1/167 (0%) Query: 12 VIALAFCAFIFNTTEFVPVPLLSDIAKDFDMSTADTGLIITIYAWSVTILSLPLMLLTAN 71 +I L +F E V L DIA DF+ A T + T + + +I + L+ Sbjct: 16 LIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQ 75 Query: 72 LERRSLLLKVFIVFVVAHTLCTFAWN-FKILIIARLMIAIAHAIFWAITASLAVRLAPIN 130 L + LLL I+ + + F +LI+AR + A F A+ + R P Sbjct: 76 LGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKE 135 Query: 131 KSSQALGLLALGTSLAMILGLPLGRILGDALGWRVTFGLIGIFAVGV 177 +A GL+ ++ +G +G ++ + W + I + V Sbjct: 136 NRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITV 182
>56KDTSANTIGN#Rickettsia 56kDa type-specific antigen protein signature. Length = 533 Score = 27.2 bits (60), Expect = 0.024 Identities = 11/19 (57%), Positives = 13/19 (68%) Query: 68 GYKIAPGVYAHLGLLYLNN 86 G IAPG A LG++YL N Sbjct: 80 GMTIAPGFRAELGVMYLRN 98
>FRAGILYSIN#Fragilysin metallopeptidase (M10C) enterotoxin signature. Length = 405 Score = 27.3 bits (60), Expect = 0.049 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%) Query: 1 MKNVFKFGTVLLTAALFAGCASESSRVVET 30 MKNV K +L TAAL A C++E+ + + Sbjct: 9 MKNV-KLLLMLGTAALLAACSNEADSLTTS 37
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 36.6 bits (84), Expect = 2e-04 Identities = 42/234 (17%), Positives = 87/234 (37%), Gaps = 50/234 (21%) Query: 271 AVVDEYKNNKFKDRIDLEQFMDMISNKVFRQSLIVHSKTYESIANKQIGPSDINKIHVVA 330 A+ + Y + K E+ NK ++ +SI N + K Sbjct: 33 AMNEHYTESDIKRNHKTEK------NKTEKEKF------KDSINN-------LVKTEFTN 73 Query: 331 DFIKKDNQWQDSYGAMPQDI-SWLCEVFYKMYPASINLSQ--ILEILPEDK--------- 378 + + K Q QD +P+D+ E+ ++Y I+L + L+ L E++ Sbjct: 74 ETLDKIQQTQDLLKKIPKDVLEIYSELGGEIYFTDIDLVEHKELQDLSEEEKNSMNSRGE 133 Query: 379 -LIVYSAFV--------RILTNSSDAMILKDEQKNIEYRPGH----------SRLSQKLI 419 + S FV +++ N D I ++ K + Y G L + + Sbjct: 134 KVPFASRFVFEKKRETPKLIINIKDYAINSEQSKEVYYEIGKGISLDIISKDKSLDPEFL 193 Query: 420 NYVRYFLNHKNNADVVFANKFSISRKLNNIDYYILLLLDGKNSLEDVAAKTLKF 473 N ++ + +++D++F+ KF +LNN I + + + + + Sbjct: 194 NLIKSLSDDSDSSDLLFSQKFKEKLELNNKSIDINFIKENLTEFQHAFSLAFSY 247
>TYPE3IMQPROT#Type III secretion system inner membrane Q protein family signature. Length = 86 Score = 56.3 bits (136), Expect = 2e-14 Identities = 21/81 (25%), Positives = 39/81 (48%) Query: 3 STLVSLGVETFKIALYISLPMLLSGLIAGLIISIFQATTQINETTLSFVPKILLVVVVII 62 LV G + + L +S + I GL++ +FQ TQ+ E TL F K+L V + + Sbjct: 2 DDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLF 61 Query: 63 FLMPWMISMMVEFTTRMLDFI 83 L W +++ + +++ Sbjct: 62 LLSGWYGEVLLSYGRQVIFLA 82
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 29.4 bits (66), Expect = 0.041 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 3/44 (6%) Query: 37 LMLAIVAGIDLSKIPAMIGVGF-SGTFKSIGIVIIFGTIIGTVL 79 LM ++ + + +P I G SG ++GI ++ G + T+L Sbjct: 975 LMTSLAFILGV--LPLAISNGAGSGAQNAVGIGVMGGMVSATLL 1016
>PHPHLIPASEA1#Bacterial phospholipase A1 protein signature. Length = 289 Score = 217 bits (554), Expect = 2e-71 Identities = 87/242 (35%), Positives = 132/242 (54%), Gaps = 14/242 (5%) Query: 88 NALGIELYKFNYLLPVTYAKNVP--------NDERKSVETKFQISLAKPLFYDLFGLRES 139 N + Y NYL+ + + + E KFQ+SLA PL+ + G Sbjct: 48 NPFTLYPYDTNYLIYTQTSDLNKEAIASYDWAENARKDEVKFQLSLAFPLWRGILGPNSV 107 Query: 140 LVAAYTQTSWWQITRT--SAPFRETNYQPEIFLNFASPKYLEQIGVKSLKFGLLHESNGR 197 L A+YTQ SWWQ++ + S+PFRETNY+P++FL FA+ ++ ++ G H+SNGR Sbjct: 108 LGASYTQKSWWQLSNSEESSPFRETNYEPQLFLGFATDYRFAGWTLRDVEMGYNHDSNGR 167 Query: 198 DGSNSRSWNRAYVQSDFVFGKLSISPRAWMVVGNKGDNKDILKYIGHGDVRLSYNLNDHI 257 SRSWNR Y + G + + W VVGN DN DI KY+G+ +++ Y+L D + Sbjct: 168 SDPTSRSWNRLYTRLMAENGNWLVEVKPWYVVGNTDDNPDITKYMGYYQLKIGYHLGDAV 227 Query: 258 FSLMLRNNLHFDKTNKGAAEISYMFPIFSTGVYGYLQYFTGYGESLIDYNRHTDKFGLGF 317 + +++ T G AE+ +PI V Y Q ++GYGESLIDYN + + G+G Sbjct: 228 L--SAKGQYNWN-TGYGGAELGLSYPITKH-VRLYTQVYSGYGESLIDYNFNQTRVGVGV 283 Query: 318 VI 319 ++ Sbjct: 284 ML 285
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 126 bits (319), Expect = 9e-34 Identities = 67/291 (23%), Positives = 120/291 (41%), Gaps = 27/291 (9%) Query: 168 DHFFKAEAARVNESRIASLKEAKLASVQKKIDSMSEILNSLEDKDELMKKSEEASNLGSL 227 ++F+ A+ R+ S V I+ ++ L + + + + G L Sbjct: 285 ENFYYAKDKS---DRLKSKSSDLQKIVMNNINRCTKKDKILNNTLKKCEDKDIFKLYGEL 341 Query: 228 LLANLGNFKGYEREICLKDF---DGNEIKLTLSD--TPKNSANEFYTRSKKFRAKALGVE 282 L AN+ K I L ++ + + +K+TL + TP + +Y + K + Sbjct: 342 LTANIYALKKGLSHIELANYYSENYDTVKITLDENKTPSQNVQSYYKKYNKLKKSEEAAN 401 Query: 283 IEKRNLKEKIEFFEGLKSLLKEASSLYELE----------ILSPKNKAKQRERHIKDVSE 332 + +E++ + + + + A + E+E + K K ++ S+ Sbjct: 402 EQLLQNEEELNYLYSVLTNINNADNYDEIEEIKKELIETGYIKFKKIYKSKKS---KTSK 458 Query: 333 NAEIFYVREFKILVGRNEKGNINL-LDLAKKDDIWLHLKDSPSAHVIIKTNKSRVPEDVL 391 I VG+N N L L A K DIW H K+ P +HVI+K +PE L Sbjct: 459 PMHFISKDGIDIYVGKNNIQNDYLTLKFANKHDIWFHTKNIPGSHVIVKNIMD-IPESTL 517 Query: 392 EMAAKFCVEFS-VKGAGRYEVDYTKRENLKRENGAN---VTYTNYKTIIIN 438 AA +S + + VDYT+ +N+K+ NGA V Y+ +TI + Sbjct: 518 LEAANLAAYYSKSQNSSNVPVDYTEVKNVKKPNGAKPGMVIYSTNQTIYVT 568 Score = 52.9 bits (127), Expect = 1e-09 Identities = 31/147 (21%), Positives = 64/147 (43%), Gaps = 8/147 (5%) Query: 14 SNFTKINQAKRINDMAILIEFNGE--KIIFDLNKSNSAIYKDDEQKEAKIYQAPFDNVLK 71 K+NQ ++ +++ + I K++ + + I+ D K I F VL+ Sbjct: 22 GKIDKVNQPEK-DEIILNIRKGRLSFKLLISSSSNYPRIHLTDLTKPNPIKAPMFCMVLR 80 Query: 72 KRFNASHIKSVECLKDNRILKF-ICTQSGSYKSENFVLYLEFTGRFTNAVITD-ENNVII 129 K + + I + + +RI+ + + + L +E GR +N + +N+I+ Sbjct: 81 KYISNAKIVDIHQINQDRIVVIDFESTDELGFNSIYSLIIEIMGRHSNMTLIRKRDNIIM 140 Query: 130 EALRHID---NSYRKIETGEILKELPA 153 ++++HI N+YR I G P Sbjct: 141 DSIKHITPDINTYRSIYPGIEYVYPPK 167
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 26.1 bits (57), Expect = 0.038 Identities = 21/98 (21%), Positives = 35/98 (35%) Query: 9 SNFINQNAPVVSQVHANQQARFDMQSLMAAELASQQSEEIKEVRPMEESYKIDPEKEHER 68 + +N N V +A Q L QS + + P E YK P + Sbjct: 282 TGEVNFNHLTVGDHNAAQAGIIASNKTHIGTLDLWQSAGLNIIAPPEGGYKDKPNDKPSN 341 Query: 69 QKNEEEASEFESEKQNSRDGDEENLDNTADNEEIVPSE 106 ++ + QN+ + N N+A EI P++ Sbjct: 342 TTQNNAKNDKQESSQNNSNTQVINPPNSAQKTEIQPTQ 379
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 30.3 bits (68), Expect = 0.017 Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 14/96 (14%) Query: 95 PLAGSLCIAIGYAVIIA--YVLKALTQALTGSFMSVDTNVWFNSFALQD-YSVLPYHFII 151 PL G + I + +A Y+L + F +W + + QD Y +LP ++ Sbjct: 419 PLGGCFPLLIQMPIFLALYYMLMGSVELRQAPFA-----LWIHDLSAQDPYYILP--ILM 471 Query: 152 VVGTLLTLFFGAKSIEKTNQ----IMMPLFFVLFSI 183 V ++ Q MP+ F +F + Sbjct: 472 GVTMFFIQKMSPTTVTDPMQQKIMTFMPVIFTVFFL 507
>BINARYTOXINB#Binary toxin B family signature. Length = 764 Score = 28.5 bits (63), Expect = 0.017 Identities = 18/63 (28%), Positives = 28/63 (44%) Query: 109 ITKCSACHDDYANGIIGPSLLTKSENEIYTMINAYKNKEKVNVLMRDLVKKMDDSEIRNL 168 IT+ D + I L + IYT+++ K K+N+L+RD D + I Sbjct: 576 ITEFDFNFDQQTSQNIKNQLAELNATNIYTVLDKIKLNAKMNILIRDKRFHYDRNNIAVG 635 Query: 169 AKE 171 A E Sbjct: 636 ADE 638
>SECGEXPORT#Protein-export SecG membrane protein signature. Length = 110 Score = 41.5 bits (97), Expect = 4e-08 Identities = 24/101 (23%), Positives = 50/101 (49%), Gaps = 1/101 (0%) Query: 3 LIFLILQFALAVIITIAVLLQKSSSIGLGAYSGSNESLFGAKGPAGFLAKFTFIVGILFI 62 L+ + L A+ ++ I + K + +G +G++ +LFG+ G F+ + T ++ LF Sbjct: 5 LLVVFLIVAIGLVGLIMLQQGKGADMGASFGAGASATLFGSSGSGNFMTRMTALLATLFF 64 Query: 63 LNTLALGYFY-NKDLKRSIIDSVDSKSLVIPKSNDVPSAPS 102 + +L LG NK K S +++ + + P+ P+ Sbjct: 65 IISLVLGNINSNKTNKGSEWENLSAPAKTEQTQPAAPAKPT 105
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 33.6 bits (76), Expect = 4e-04 Identities = 13/43 (30%), Positives = 18/43 (41%) Query: 124 SLREVLTPFELAFKYYFHADYRDFFAFYGAEEAPGMDYVSSQD 166 +L E F LAF YYF D+R Y + M+ + Sbjct: 233 NLTEFQHAFSLAFSYYFAPDHRTVLELYAPDMFEYMNKLEKGG 275
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 28.6 bits (64), Expect = 0.039 Identities = 25/191 (13%), Positives = 62/191 (32%), Gaps = 31/191 (16%) Query: 209 LLINTVLFLPFFLGFLA--WVLTKDGFAYDANGVVSLMPYKYAIN--LIEMPIVGILLLV 264 L + ++ + ++ + + +S + + + P++ + L+ Sbjct: 38 LSAMLMGLSDYYFEHFSKLMLIPAEQSYLPFSQALSYVVDNVLLEFFYLCFPLLTVAALM 97 Query: 265 GVVLVLVGIFQGAF---TKSIR-------------GIFAYGVGV-----TLAVTALFLIT 303 + + Q F ++I+ IF+ V L V L ++ Sbjct: 98 AI---ASHVVQYGFLISGEAIKPDIKKINPIEGAKRIFSIKSLVEFLKSILKVVLLSILI 154 Query: 304 GLNGTAFYPSFSDLS-SSLT--IKNASSSHYTLGVMAYVSLLVPVVLAYIIVVWRAIDSK 360 + + L + L V+ V +V + Y ++ I Sbjct: 155 WIIIKGNLVTLLQLPTCGIECITPLLGQILRQLMVICTVGFVVISIADYAFEYYQYIKEL 214 Query: 361 KITQDEIKNDH 371 K+++DEIK ++ Sbjct: 215 KMSKDEIKREY 225
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 35.2 bits (81), Expect = 7e-04 Identities = 31/176 (17%), Positives = 64/176 (36%), Gaps = 8/176 (4%) Query: 69 QKARLMSNHERIDELISEIDTLKAKIAQKDEAEDAMERVINELKESIGTANERAKNNEAN 128 ++ R I+ L + ++ +E+ + R+ + +KE T + E N Sbjct: 149 EQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELN 208 Query: 129 F---TATLAELNQNKNALVEASERENRLKRDMAVLRNEIEAKENSLKEQEANLLKVKNEL 185 A + N S E D + L ++ ++++ EQE ++ NEL Sbjct: 209 LDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNEL 268 Query: 186 NLEFSNLA---NKIFE--EKSANFTQNSQNSLDLLLKPLKEQISTFQERVNAVHDE 236 + S L ++I E+ TQ +N + L+ + I + + Sbjct: 269 RVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEER 324
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 38.1 bits (88), Expect = 2e-05 Identities = 39/185 (21%), Positives = 81/185 (43%), Gaps = 7/185 (3%) Query: 7 ITGASSGIGAAVAKAFARRGENLILIARRGELLKELKSEIAKFANVDVVIELCDLSKQEN 66 ITGA+ GIG AVA+ A +G ++ + E L+++ S + A D+ Sbjct: 13 ITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPA-DVRDSAA 71 Query: 67 ALSLWQKLEK--FELKALINNAGFGDYNKVGEQNLEKITQMINLNIISLVTLSTLFTKKY 124 + ++E+ + L+N AG + + E+ ++N + S +K Sbjct: 72 IDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSKYM 131 Query: 125 KDKDT-QLINISSIGGYKIVPNAVTYCASKFFVSAFSEGLYHELAQDKQAKMQAKVLAPA 183 D+ + ++ + S + Y +SK F++ L ELA + ++ +++P Sbjct: 132 MDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELA---EYNIRCNIVSPG 188 Query: 184 ATKTE 188 +T+T+ Sbjct: 189 STETD 193
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 35.0 bits (80), Expect = 0.001 Identities = 29/149 (19%), Positives = 46/149 (30%), Gaps = 20/149 (13%) Query: 493 GLYPYTARYLKHFNNHFSTIGINGMNELLRNFTNDKENISTKFGRDFAIEMVEFLRDKIR 552 R + N + ++ N L T E+ + K D+ + + DK Sbjct: 119 NGNAKAHRDVSSEENRYFSVEKNEYPTKLNGKTVTTEDQTQKRREDYYMPRL----DKFV 174 Query: 553 TFQEETGNLYNLEATPAEGTT---YRFAKEDKKRYPDIIQAGGGENIYYTNST--QLPAN 607 T E P E +T D+ +YP ++ G G Y L N Sbjct: 175 T-----------EVAPIEASTASSDAGTYNDQNKYPAFVRLGSGSQFIYKKGDNYSLILN 223 Query: 608 FTDDAYEALDLQDDLQTSYTGGTVFHLYM 636 + L L D T GT + + Sbjct: 224 NHEVGGNNLKLVGDAYTYGIAGTPYKVNH 252
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 34.3 bits (78), Expect = 0.003 Identities = 38/175 (21%), Positives = 67/175 (38%), Gaps = 21/175 (12%) Query: 518 EAKEKFNLALHEVNLLFSEIRIKEEELKSLKTELADVDRRLESYNSAKQI-EELLSPLES 576 A ++ L +E E E L+ + ++ +S E LE+ Sbjct: 271 GAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEA 330 Query: 577 EFASLSDELDDKKAEFSKLTRVVSQNEALQEYLSTPEKPPFFIFQQIFKTEAFEKYNDEA 636 E L ++ +A L R + + ++ + EA + +E Sbjct: 331 EHQKLEEQNKISEASRQSLRRDLDASREAKK-----------------QLEAEHQKLEEQ 373 Query: 637 LKVGEINRQIAEQNLKASKQNGESKEKNEARLNELNSEIAGLESRAAELGTKINL 691 K+ E +RQ ++L AS+ E+K++ E L E NS++A LE EL L Sbjct: 374 NKISEASRQSLRRDLDASR---EAKKQVEKALEEANSKLAALEKLNKELEESKKL 425
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 45.3 bits (107), Expect = 1e-06 Identities = 73/347 (21%), Positives = 126/347 (36%), Gaps = 81/347 (23%) Query: 295 AKIESVYGGVGNDNVNLQNGAETVEIFGGSGNDGITVNNSTVSGRAIKNDEGRIIRYEAI 354 +IES + G G+D V L A + I+ G G+D + + Sbjct: 610 IRIES-HLGDGDDKVFL--SAGSANIYAGKGHDVVYYD---------------------- 644 Query: 355 KGGDGVDTISIQNESKVRGNIYGNAGQDNIS--LEGGAKVYGAIYGDTKTMNDIYEKQV- 411 K G TI ++ AG ++ L G KV + + + ++ Sbjct: 645 KTDTGYLTIDGTKATE--------AGNYTVTRVLGGDVKVLQEVVKEQEVSVGKRTEKTQ 696 Query: 412 ----------NPALDIVDSGADIDTITLSGAGTSAKHIFAGDGDDKIVVKDGAKVTGEVR 461 L D+ ++ + GT+ F G I GA + Sbjct: 697 YRSYEFTHINGKNLTETDNLYSVEELI----GTTRADKFFGSKFTDIF--HGADGDDLIE 750 Query: 462 GDEGDDKITVSDNQTYVSAINGRGGDDTILVENGANVDGIVGRWGNDSITVTGKGTTVKE 521 G++G+D++ G G+DT+ G D + G GND + + G Sbjct: 751 GNDGNDRLY------------GDKGNDTL--SGGNGDDQLYGGDGNDKL-IGVAG---NN 792 Query: 522 YIHGDDGNDTIKVLDGAVVKGDIEGNAGNDIIEIDGGAN--KEGFVGGKIISGDGDDTVT 579 Y++G DG+D +V ++ K + G GND + GA+ G + G G+D Sbjct: 793 YLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKGGYGNDIYR 852 Query: 580 IRNMNLNKVDNDYNKNVKVDTGTGNDTVNLYNVTVNDTNIWTKEGND 626 + Y ++ D G D ++L ++ D + +EGND Sbjct: 853 YL--------SGYGHHIIDDDGGKEDKLSLADIDFRDV-AFKREGND 890 Score = 37.6 bits (87), Expect = 3e-04 Identities = 56/249 (22%), Positives = 92/249 (36%), Gaps = 48/249 (19%) Query: 417 IVDSGADIDTITLSGAGTSAKHIFAGDGDDKI---------VVKDGAK--------VTGE 459 I D D AG++ +I+AG G D + + DG K VT Sbjct: 612 IESHLGDGDDKVFLSAGSA--NIYAGKGHDVVYYDKTDTGYLTIDGTKATEAGNYTVTRV 669 Query: 460 VRGDEGDDKITVSDNQTYV-----------SAINGRGGDDTILVENGANVDGIVGRWGND 508 + GD + V + + V G + +N +V+ ++G D Sbjct: 670 LGGDVKVLQEVVKEQEVSVGKRTEKTQYRSYEFTHINGKNLTETDNLYSVEELIGTTRAD 729 Query: 509 SITVTGKGTTVKEYIHGDDGNDTIKVLDGAVV----KGD--IEGNAGNDIIEIDGGANKE 562 G+ + HG DG+D I+ DG KG+ + G G+D ++ GG + Sbjct: 730 KF----FGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDD--QLYGGDGND 783 Query: 563 GFVGGK----IISGDGDDTVTIRNMNLNKVDNDYNKNVKVDTGTGNDTVNLYNVTVNDTN 618 +G + GDGDD ++ +L K N D G++ +L + D Sbjct: 784 KLIGVAGNNYLNGGDGDDEFQVQGNSLAK--NVLFGGKGNDKLYGSEGADLLDGGEGDDL 841 Query: 619 IWTKEGNDT 627 + GND Sbjct: 842 LKGGYGNDI 850
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 37.6 bits (87), Expect = 4e-04 Identities = 56/274 (20%), Positives = 92/274 (33%), Gaps = 29/274 (10%) Query: 904 INTGADKDHVVINNSALTHAVVDTDKGDDDVDIEEGTTFNYNIINTSE---GNDTIT--I 958 + D D V ++ + + KG D V ++ T I T GN T+T + Sbjct: 613 ESHLGDGDDKVFLSAGSAN--IYAGKGHDVVYYDKTDTGYLTIDGTKATEAGNYTVTRVL 670 Query: 959 NRDPGDARITFQSSALNTGDGNDTVKVTNTTFLKLADGNPSAIDTGN------GDDTITI 1012 D + + ++ G + + + F + N + D G Sbjct: 671 GGDVKVLQEVVKEQEVSVGKRTEKTQYRSYEFTHINGKNLTETDNLYSVEELIGTTRADK 730 Query: 1013 KDGTIFQDFSYIAAGNGVDTITLESGAKFNQANVYADAGDDIIN--------VNGAEFKG 1064 G+ F D + +G D I G +Y D G+D ++ G Sbjct: 731 FFGSKFTDIFH--GADGDDLIEGNDG----NDRLYGDKGNDTLSGGNGDDQLYGGDGNDK 784 Query: 1065 ENAYNHNAGVHGGAGDDKIFVNSGKFDNAKVEGDAGNDTIHIKSGARFENASIYGDSIDG 1124 N ++GG GDD+ V + G GND ++ GA + D + G Sbjct: 785 LIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKG 844 Query: 1125 LTTGNDTIIVEKGATLINTTINGGAGYDTLKIAD 1158 GND G + + G D L +AD Sbjct: 845 -GYGNDIYRYLSGYGH-HIIDDDGGKEDKLSLAD 876 Score = 30.7 bits (69), Expect = 0.045 Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 13/97 (13%) Query: 528 GGGNDEITAGDNLTLSNHSGIHGDWGNNGSAGTGSDDGDDIIKIGK-NLTMSGG---SVI 583 G+D I D + ++GD GN+ +G +GDD + G N + G + + Sbjct: 743 ADGDDLIEGNDG-----NDRLYGDKGNDTLSG---GNGDDQLYGGDGNDKLIGVAGNNYL 794 Query: 584 SGGGGNDEITIGDKANISNSTIDSGAGKDEIYMTNGT 620 +GG G+DE + + N + G G D++Y + G Sbjct: 795 NGGDGDDEFQVQGNSLAKN-VLFGGKGNDKLYGSEGA 830
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 28.2 bits (62), Expect = 0.030 Identities = 28/130 (21%), Positives = 57/130 (43%), Gaps = 15/130 (11%) Query: 61 KSVTPKVVEKIHGLKYEPFHLKTKG----DYGEVASKVFAVLIVMDEAKGVGLFDENSL- 115 + +TPK + ++ L HL + D G V S + +L+ +D+A+ G D++ L Sbjct: 438 RRITPKKLRELSDLLRT--HLSSAATKQLDMGGVLSDLDTMLVALDKAEREGGVDKDQLK 495 Query: 116 -FKKAKFAYYKAYHDK-KERWSDGKDAEGFLKTGLEAAGVSKADYEKELANPKVTELLKK 173 F Y+ D K R D K+ + E + ++++ + P + + K Sbjct: 496 SFNSLILKTYRVIEDYVKGREGDTKN------SSTEVSPYHRSNFMLSIVEPSLQRIQKH 549 Query: 174 WDESYDVAKI 183 D+++ + I Sbjct: 550 LDQTHSFSDI 559
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 79.9 bits (197), Expect = 1e-19 Identities = 28/112 (25%), Positives = 54/112 (48%) Query: 10 KTSVLVVEDDDMARELIISGLKPYCEQVIGACNGQDGVEKFKKQGFDIVMSDIHMPVLNG 69 ++LV +DD R ++ L V N D+V++D+ MP N Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 70 FEMMNEMKRTKPHQKFIVFTSYDSDENLIKSMEEGAMLFLKKPIDMKDLRAM 121 F+++ +K+ +P +V ++ ++ IK+ E+GA +L KP D+ +L + Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGI 114
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 86.8 bits (215), Expect = 3e-21 Identities = 45/181 (24%), Positives = 74/181 (40%), Gaps = 22/181 (12%) Query: 7 LITGITGQDGSYLAEFLLKKGYIVHGIKRRTSLFNTDRIDHLYQDPH--------VDNRN 58 L+TG G G ++++ LL+ G+ V GI N Y D + Sbjct: 4 LVTGAAGFIGFHVSKRLLEAGHQVVGIDN----LND------YYDVSLKQARLELLAQPG 53 Query: 59 FFLHYGDMTDSMNLTRIIQEVQPDEIYNLAAMSHVQVSFETPEYVANADGTGTLRLLEAI 118 F H D+ D +T + + ++ V+ S E P A+++ TG L +LE Sbjct: 54 FQFHKIDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGC 113 Query: 119 RILGLEKKTKIYQASTSELYGKVQETPQSETTPF-YPRSPYAVAKMYAYWITVNYREAYG 177 R ++ + AS+S +YG ++ P S +P S YA K + Y YG Sbjct: 114 RHNKIQ---HLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYG 170 Query: 178 I 178 + Sbjct: 171 L 171
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 80.6 bits (199), Expect = 3e-19 Identities = 60/371 (16%), Positives = 129/371 (34%), Gaps = 73/371 (19%) Query: 6 KIYLAGHKGLVGSAIVRNLKSKGYENI----ITRTHS-------------------ELDL 42 K + G G +G + + L G++ + + + ++DL Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 43 MDQKAVCEFFEKEKPEYVVLAAAKVGGIVANSTYRADFIYENLQIQNNVIHQSYLHKVKK 102 D++ + + F E V ++ ++ + A + NL N++ +K++ Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHA-YADSNLTGFLNILEGCRHNKIQH 120 Query: 103 LLFLGSTCIYPKNAPQPMSEDVLLTSPLEYTNEPYAIAKIAGMKMCESYNLQYGTNFISV 162 LL+ S+ +Y N P S D + P+ YA K A M +Y+ YG + Sbjct: 121 LLYASSSSVYGLNRKMPFSTDDSVDHPVS----LYAATKKANELMAHTYSHLYGLPATGL 176 Query: 163 MPTNLYGPNDNFDLETSHVLPALIRKIHLAKLLSEEKFGEVVKDLKVRDINEAMVYLDKF 222 +YGP D+ L + + K Sbjct: 177 RFFTVYGPWGRPDM----ALFKFTKAMLEGK----------------------------- 203 Query: 223 GISKDRVEIWGTGEPRREFLHSEDMADACVFLLENRDFKDIYDKNSKEIRNTH------I 276 ++++ G+ +R+F + +D+A+A + L + D Sbjct: 204 -----SIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVY 258 Query: 277 NIGTGKDISINELANFVKNIIGFKGELYFNDNKPDGTMLKLTDPSKLHS-LGWKHKVELE 335 NIG + + + +++ +G + + +P + D L+ +G+ + ++ Sbjct: 259 NIGNSSPVELMDYIQALEDALGIEAKKNMLPLQPGDVLETSADTKALYEVIGFTPETTVK 318 Query: 336 YGIKTLYEWYL 346 G+K WY Sbjct: 319 DGVKNFVNWYR 329
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 106 bits (265), Expect = 4e-28 Identities = 66/357 (18%), Positives = 119/357 (33%), Gaps = 56/357 (15%) Query: 13 TVLVTGHTGFKGSWLVYWLSQMGAKVIGY-ALEAPTSPN-----HIGLLNPDIISVTGDI 66 LVTG GF G + L + G +V+G L + L P D+ Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 67 RDLDGLNQIFSKYKPDIVFHLAAQPIVRISYEKPIETYETNVIGTLKVFEACRKNNAKAI 126 D +G+ +F+ + VF + VR S E P ++N+ G L + E CR N + + Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 127 VNITSDKAYENKEWVWGYRENDPMGGYD-------PYSSSKGCADLLTSSYRNSYFNTKD 179 + Y + V+G P D Y+++K +L+ +Y + Y Sbjct: 122 L-------YASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLY----- 169 Query: 180 YKKTHNTLLVTCRAGNVIGGG---DWAKDRLITDVMVSASQGKKISIRNP-NATRPWQHV 235 R V G D A + ++ +GK I + N R + ++ Sbjct: 170 -----GLPATGLRFFTVYGPWGRPDMALFKFTKAML----EGKSIDVYNYGKMKRDFTYI 220 Query: 236 LECISGYLHIGQKLLEERVEYSGAWNFGPSNDRSICVEEVIKNIKKH----WNKIDYEIS 291 + + +L + W + + NI + Sbjct: 221 DDIAEAII----RLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALE 276 Query: 292 QDLGQPHEANLLKL----------DCSKAYALLKWKDVWGSETTFEKTAKWYKAYYE 338 LG + N+L L D Y ++ + + + WY+ +Y+ Sbjct: 277 DALGIEAKKNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDFYK 333
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 75.2 bits (185), Expect = 1e-17 Identities = 61/338 (18%), Positives = 128/338 (37%), Gaps = 70/338 (20%) Query: 1 MKILLAGSTGFLGRCLLESFIKNGHEVIALKRSTS--NTNIIDKNL-----NDIKFYNVD 53 MK L+ G+ GF+G + + ++ GH+V+ + + ++ L +F+ +D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 54 ---EVALRDIFKNNKVDIVVNTVTNYG-----KNNNSVSEIVMTNLMFGLELLE------ 99 + D+F + + V + +N ++ ++ +NL L +LE Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYAD---SNLTGFLNILEGCRHNK 117 Query: 100 ---------NSI--NNTKAFINTDTLLYRNINAYAFSK--AQLVDWMIYLSNKNTKI--I 144 +S+ N K +TD + ++ YA +K +L M + + + Sbjct: 118 IQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANEL---MAHTYSHLYGLPAT 174 Query: 145 NVRLEHMYGPFGGHNNFICWLVGQLRQNVQKVKLTSGLQKRDFIYIDDVVSAYEVIIKNI 204 +R +YGP+G + + + + G KRDF YIDD+ A + I Sbjct: 175 GLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVI 234 Query: 205 SKFQ---------------DYEEFELGTGNSIEVKVFIEKVYKEILKQQNINTKLLFGAI 249 Y + +G + +E+ +I+ + + + N Sbjct: 235 PHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKN-------- 286 Query: 250 AYRENENMDMK---ANIQKLVS-FGWKPEVSIESGIKK 283 + D+ A+ + L G+ PE +++ G+K Sbjct: 287 -MLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKN 323
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 178 bits (453), Expect = 1e-55 Identities = 81/359 (22%), Positives = 145/359 (40%), Gaps = 52/359 (14%) Query: 1 MRYLITGGCGFLGTNIASRILEQGDELIIFDSLYRYGSYQNK----EWLGTKGKFVFVYG 56 M+YL+TG GF+G +++ R+LE G +++ D+L Y K E L G F F Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPG-FQFHKI 59 Query: 57 DIRNINDIEQTIKIYKPDVIFHLAGQVAMTTSIENPRMDFEINAVGSFNLINAVRLYSPD 116 D+ + + + +F ++A+ S+ENP + N G N++ R Sbjct: 60 DLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQ 119 Query: 117 STVIYSSTNKVYGNLNQYKYKETDTRYECIDRPNGFNEEVALDFHSPYGVSKGSADQYML 176 ++Y+S++ VYG + + D+ +D P S Y +K + + Sbjct: 120 -HLLYASSSSVYGLNRKMPFSTDDS----VDHP-----------VSLYAATKKANELMAH 163 Query: 177 DFTRIYGVKTAVFRHSSMFG--GRQFATYDQGWIGWFVQKAVEIKINTLKEPFTISGNGK 234 ++ +YG+ R +++G GR + F + +E + + GK Sbjct: 164 TYSHLYGLPATGLRFFTVYGPWGRPDMALFK-----FTKAMLE------GKSIDVYNYGK 212 Query: 235 QVRDLLYASDCVDLYLMASHKIDEIKGQ----------------VFNIGGGIQNSYSLLE 278 RD Y D + + I Q V+NIG + L++ Sbjct: 213 MKRDFTYIDDIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNS--SPVELMD 270 Query: 279 LFSFLEQELNIKMKYKQLPPRESDQKIFVADINKVKKLIGWEPKISKEEGVKKMIEWVL 337 LE L I+ K LP + D AD + ++IG+ P+ + ++GVK + W Sbjct: 271 YIQALEDALGIEAKKNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYR 329
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 27.9 bits (62), Expect = 0.039 Identities = 10/16 (62%), Positives = 13/16 (81%) Query: 32 ITGASGSGKSLFAKSL 47 ITG SG+GK L A++L Sbjct: 165 ITGESGTGKELVARAL 180
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 28.3 bits (63), Expect = 0.028 Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%) Query: 43 ILGQSGSGKSTLANLISFSEPKSGGK-IYIN 72 I G+SG+GK +A + + G + IN Sbjct: 165 ITGESGTGKELVARALHDYGKRRNGPFVAIN 195
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 33.7 bits (77), Expect = 0.001 Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 16/105 (15%) Query: 107 SKSNILLVGPTGSGKTLMAQTL---ARFLDVP-IAI-CDA--TSLTEAGYVGEDVENILT 159 + +++ G +G+GK L+A+ L + + P +AI A L E+ G + T Sbjct: 159 TDLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGH-EKGAFT 217 Query: 160 RLLQAANGDVKKAEQGIVFVDEID--------KIARMSENRSITR 196 + G ++AE G +F+DEI ++ R+ + T Sbjct: 218 GAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTT 262
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 459 bits (1183), Expect = e-165 Identities = 184/338 (54%), Positives = 245/338 (72%), Gaps = 2/338 (0%) Query: 3 LDQVIGFFSSDMGIDLGTANTLVLVKDKGIIINEPSVVAVRREKYGKQK-ILAVGHAAKE 61 L + G FS+D+ IDLGTANTL+ VK +GI++NEPSVVA+R+++ G K + AVGH AK+ Sbjct: 2 LKKFRGMFSNDLSIDLGTANTLIYVKGQGIVLNEPSVVAIRQDRAGSPKSVAAVGHDAKQ 61 Query: 62 MVGKTPGDIEAIRPMRDGVIADFDMTERMIRYFIEKTHKRKSF-LRPRIIISVPYGLTQV 120 M+G+TPG+I AIRPM+DGVIADF +TE+M+++FI++ H PR+++ VP G TQV Sbjct: 62 MLGRTPGNIAAIRPMKDGVIADFFVTEKMLQHFIKQVHSNSFMRPSPRVLVCVPVGATQV 121 Query: 121 ERKAVRESALSAGAREVFLIEEPMAAAIGANLPVREPQGNLVVDIGGGTTEIGVVSLGGL 180 ER+A+RESA AGAREVFLIEEPMAAAIGA LPV E G++VVDIGGGTTE+ V+SL G+ Sbjct: 122 ERRAIRESAQGAGAREVFLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNGV 181 Query: 181 VISKSIRTAGDKIDISIVNYIKEKYNLLIGERTGEEIKIAVGSAVQLEKELSVVVKGRDQ 240 V S S+R GD+ D +I+NY++ Y LIGE T E IK +GSA ++ + V+GR+ Sbjct: 182 VYSSSVRIGGDRFDEAIINYVRRNYGSLIGEATAERIKHEIGSAYPGDEVREIEVRGRNL 241 Query: 241 VSGLLSRVELTSEDVREAMREPLKEIADALKTVLEMMPPDLAGDIVETGIVLTGGGALIR 300 G+ L S ++ EA++EPL I A+ LE PP+LA DI E G+VLTGGGAL+R Sbjct: 242 AEGVPRGFTLNSNEILEALQEPLTGIVSAVMVALEQCPPELASDISERGMVLTGGGALLR 301 Query: 301 GLDKFLSDIVKLPVFVADEPLLAVARGTGKALEEIGLL 338 LD+ L + +PV VA++PL VARG GKALE I + Sbjct: 302 NLDRLLMEETGIPVVVAEDPLTCVARGGGKALEMIDMH 339
>SECFTRNLCASE#Bacterial translocase SecF protein signature. Length = 333 Score = 31.0 bits (70), Expect = 0.018 Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 3/62 (4%) Query: 375 EIANRSIKSKIITTSITTVTSFLVQLNTIAIIVLGVYMIQDTHLTMGGLIAAVMLSSRAI 434 ++ N S+ + T +T +T+ L + +++ G +I+ M + SS + Sbjct: 244 DVMNLSVNETLSRTVMTGMTTLLA---LVPMLIWGGDVIRGFVFAMVWGVFTGTYSSVYV 300 Query: 435 AP 436 A Sbjct: 301 AK 302
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 300 bits (769), Expect = 5e-99 Identities = 96/462 (20%), Positives = 208/462 (45%), Gaps = 9/462 (1%) Query: 35 ILNSVDDIKSNLQTKNYDAYDLKFMSSLSEAVLAKAPSTSKKILYTVAITMFWLLVWASW 94 + + I+ L T + + +F+ + E + + + Y + + + + Sbjct: 18 VWSETWKIRKQLDTPVREKDENEFLPAHLELIETPVSRRPRLVAYFIMGFLVIAFILSVL 77 Query: 95 AQIDEITRGSGKIIPSGKNQAIQNLEGGIVDQIFVKEGDEVKKDQILIRLDNKNFTSSYG 154 Q++ + +GK+ SG+++ I+ +E IV +I VKEG+ V+K +L++L + Sbjct: 78 GQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTL 137 Query: 155 ESKLRLDELQAKFMRLDAEANDKDFDYDEARDANNSKAIR--------YELSLHSSNIDH 206 +++ L + + + R + + + + + SL Sbjct: 138 KTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFST 197 Query: 207 LNEQIGILTEQIHQRQSELVELKNKISQTQNSYNLVLKEKAIMEPIFKKGLVSEVEYIQL 266 Q + ++++E + + +I++ +N + + K +++ ++ Sbjct: 198 WQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQ 257 Query: 267 QRRVNDLRGELDAAVLAVPRVESTIKEAKNKIEEAKLAFKNNAKKELNEVSAEIARINES 326 + + + EL + ++ES I AK + + FKN +L + + I + Sbjct: 258 ENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLE 317 Query: 327 QISLSDRVERTYVRSPVNGIVSKMMVHTVSGVIKPGENIAEIVPLEDKLVAEVKVKPADV 386 +R + + +R+PV+ V ++ VHT GV+ E + IVP +D L V+ D+ Sbjct: 318 LAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDI 377 Query: 387 AFLRPGLDTMVKFTAYDFSIYGGLKGKVTQISADTETNEKTGESYYLVRIETEKNYLGSE 446 F+ G + ++K A+ ++ YG L GKV I+ D +++ G + V I E+N L + Sbjct: 378 GFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVFN-VIISIEENCLSTG 436 Query: 447 EKPLRIKVGMIVSADIITGKKTILDYLLKPILKAKQNALTER 488 K + + GM V+A+I TG ++++ YLL P+ ++ +L ER Sbjct: 437 NKNIPLSSGMAVTAEIKTGMRSVISYLLSPLEESVTESLRER 478
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 93.0 bits (231), Expect = 2e-22 Identities = 79/313 (25%), Positives = 135/313 (43%), Gaps = 51/313 (16%) Query: 13 VNIGTIGHVDHGKTTLTAAI---SAVLSRKGLAELKDYDNIDNAPEEKERGITIATSHIE 69 +NIG + HVD GKTTLT ++ S ++ G + DN E++RGITI T Sbjct: 4 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGT-TRTDNTLLERQRGITIQTGITS 62 Query: 70 YETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLSRQVGVP 129 ++ E +D PGH D++ + + +DGAIL++SA DG QTR R++G+P Sbjct: 63 FQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIP 122 Query: 130 YIVVFMNKAD----------------MVDDAELLELVEMEIRELLNEYNFP--------G 165 I F+NK D + + + + VE+ + + G Sbjct: 123 TI-FFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEG 181 Query: 166 DD---TPIVSGSALKALE----EAKAGQDGEW------SAK----IMELMDAVDSYIPTP 208 +D +SG +L+ALE E+ + SAK I L++ + + + Sbjct: 182 NDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSS 241 Query: 209 VRATDKDLLMPIEDVFSISGRGTVVTGRIEKGVIKVGDTIEIVG---IKPTQTTTVTGVE 265 +L + + R + R+ GV+ + D++ I IK T+ T E Sbjct: 242 THRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKIKITEMYTSINGE 301 Query: 266 MFRKEMDQGEAGD 278 ++D+ +G+ Sbjct: 302 --LCKIDKAYSGE 312
>SECETRNLCASE#Bacterial translocase SecE signature. Length = 127 Score = 29.5 bits (66), Expect = 3e-04 Identities = 15/49 (30%), Positives = 29/49 (59%) Query: 3 KIINYIKLSKLEIMKVIYPTKEQIRNAFFAVFIVVAVVSLFLALVDVIM 51 + + + ++ E+ KVI+PT+++ + V V AV+SL L +D I+ Sbjct: 67 ATVAFAREARTEVRKVIWPTRQETLHTTLIVAAVTAVMSLILWGLDGIL 115
>SECA#SecA protein signature. Length = 901 Score = 1117 bits (2891), Expect = 0.0 Identities = 456/908 (50%), Positives = 598/908 (65%), Gaps = 58/908 (6%) Query: 1 MISSVFRKIFGTKNDREVKKYIRRVAQINALEPTYEKMSDDELKIKFNELKAQVVEEKVT 60 M+ + K+FG++NDR +++ + V INA+EP EK+SD+ELK K E +A++ E+ Sbjct: 1 MLIKLLTKVFGSRNDRTLRRMRKVVNIINAMEPEMEKLSDEELKGKTAEFRARL-EKGEV 59 Query: 61 LDEILNDVFAIVREASKRVLKMRHFDVQLIGGMVLNEGRIAEMKTGEGKTLVATLPVILN 120 L+ ++ + FA+VREASKRV MRHFDVQL+GGMVLNE IAEM+TGEGKTL ATLP LN Sbjct: 60 LENLIPEAFAVVREASKRVFGMRHFDVQLLGGMVLNERCIAEMRTGEGKTLTATLPAYLN 119 Query: 121 AMSGKGVHVVTVNDYLAKRDATQMGELYNFLGLSVDVILSGGYDDNVRQAAYNADITYGT 180 A++GKGVHVVTVNDYLA+RDA L+ FLGL+V + L G ++ AY ADITYGT Sbjct: 120 ALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPA-KREAYAADITYGT 178 Query: 181 NSEFGFDYLRDNMKFEAGQKVQRGHNFVIVDEVDSILIDEARTPLIISGPTNRTLDGYIR 240 N+E+GFDYLRDNM F ++VQR ++ +VDEVDSILIDEARTPLIISGP + + Y R Sbjct: 179 NNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKR 238 Query: 241 ADQVAKQLTRGTPADPNVPGSKPTGDFIVDEKNRTIMITEAGISKAEKLF-------GVE 293 +++ L R D + G F VDEK+R + +TE G+ E+L E Sbjct: 239 VNKIIPHLIRQEKEDSE--TFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGE 296 Query: 294 NLYNLENAILSHHLDQALKAHNLFEKDVHYVVKDGEVVIVDEFTGRLSEGRRFSEGLHQA 353 +LY+ N +L HH+ AL+AH LF +DV Y+VKDGEV+IVDE TGR +GRR+S+GLHQA Sbjct: 297 SLYSPANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQA 356 Query: 354 LEAKEGVKIQEESQTLADTTYQNYFRMYKKLAGMTGTAQTEATEFSQIYNLDVISIPTNV 413 +EAKEGV+IQ E+QTLA T+QNYFR+Y+KLAGMTGTA TEA EFS IY LD + +PTN Sbjct: 357 VEAKEGVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNR 416 Query: 414 PVIRIDSNDLIYKTQNEKFKAVIDEIKKAHEKGQPVLVGTASIERSEVLHEMLKKVGIPH 473 P+IR D DL+Y T+ EK +A+I++IK+ KGQPVLVGT SIE+SE++ L K GI H Sbjct: 417 PMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKH 476 Query: 474 SVLNAKNHEKEAEIIAQAGVKGAVTIATNMAGRGVDIRI--------------------- 512 +VLNAK H EA I+AQAG AVTIATNMAGRG DI + Sbjct: 477 NVLNAKFHANEAAIVAQAGYPAAVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEK 536 Query: 513 --------DDEVRNLGGLYIIGTERHESRRIDNQLRGRAGRQGDPGMSRFYLSLEDNLLR 564 D V GGL+IIGTERHESRRIDNQLRGR+GRQGD G SRFYLS+ED L+R Sbjct: 537 IKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDALMR 596 Query: 565 IFGSDRIKAIMDRLGIDEGESIESRMVTRAVENAQKKVESLHFEARKHLLEYDDVANEQR 624 IF SDR+ +M +LG+ GE+IE VT+A+ NAQ+KVES +F+ RK LLEYDDVAN+QR Sbjct: 597 IFASDRVSGMMRKLGMKPGEAIEHPWVTKAIANAQRKVESRNFDIRKQLLEYDDVANDQR 656 Query: 625 KTIYKYRDELLDKNYDMSEKIAQNRKEYAANLLDTAEIFHGGLKDDFDIKNLCSIILADC 684 + IY R+ELLD + D+SE I R++ +D A I L++ +DI L + D Sbjct: 657 RAIYSQRNELLDVS-DVSETINSIREDVFKATID-AYIPPQSLEEMWDIPGLQERLKNDF 714 Query: 685 GEEIDESELKGLEYD----ELIEKLAQIFEARYNEKMSVLNEDQRKEIEKILYLQVLDNA 740 ++ +E E + L E++ Y K V+ + + EK + LQ LD+ Sbjct: 715 DLDLPIAEWLDKEPELHEETLRERILAQSIEVYQRKEEVVGAEMMRHFEKGVMLQTLDSL 774 Query: 741 WREHLYQMDILKTGIGLRGYNQKDPLVEYKKESYNLFMELVSRLKSESVKTLQVVRFKSR 800 W+EHL MD L+ GI LRGY QKDP EYK+ES+++F ++ LK E + TL V+ + Sbjct: 775 WKEHLAAMDYLRQGIHLRGYAQKDPKQEYKRESFSMFAAMLESLKYEVISTLSKVQVRMP 834 Query: 801 EEQEEQARMM---------LEASQNAENENLSYNNQGEDENFTPEKKIPRNAPCPCGSGK 851 EE EE + ++ + ++++ + T E+K+ RN PCPCGSGK Sbjct: 835 EEVEELEQQRRMEAERLAQMQQLSHQDDDSAAAAALAAQ---TGERKVGRNDPCPCGSGK 891 Query: 852 KYKDCHGK 859 KYK CHG+ Sbjct: 892 KYKQCHGR 899
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 29.1 bits (65), Expect = 0.038 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 6/74 (8%) Query: 95 GFIMGVMLYYVLRLKDETALIAGLALALSSTAIVLKTLNDSGDVSKIYGRKALGILLFQD 154 G+ + L Y L +IA LA +S +V+ L S D Y + +LF Sbjct: 140 GYTQWLSLLYAL------PVIALTGLAFASLGMVVTALAPSYDYFIFYQTLVITPILFLS 193 Query: 155 IAVIPILLMIDMFS 168 AV P+ + +F Sbjct: 194 GAVFPVDQLPIVFQ 207
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 62.3 bits (151), Expect = 8e-13 Identities = 30/163 (18%), Positives = 57/163 (34%), Gaps = 26/163 (15%) Query: 94 KTTSLGSGVIISNDGYIVTNNHVIEDSDQIVVTLA-----------NGGKEYKAKLIGSD 142 T + SGV++ ++TN HV++ + L G ++ Sbjct: 99 TGTFIASGVVV-GKDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYS 157 Query: 143 PKTDLAVVKIEA--------NGLNAITFADSSKLLDADVVFAIGNPFGVGESITQGIVSG 194 + DLA+VK + T +++++ + G P + T G Sbjct: 158 GEGDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYPGDKPVA-TMWESKG 216 Query: 195 LNKDNIGLNQYENFIQTDASINPGNSGGALVDSRGYLVGINSA 237 G +Q D S GNSG + + + ++GI+ Sbjct: 217 KITYLKG-----EAMQYDLSTTGGNSGSPVFNEKNEVIGIHWG 254
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 95.7 bits (238), Expect = 5e-25 Identities = 34/137 (24%), Positives = 63/137 (45%), Gaps = 3/137 (2%) Query: 2 TRILMIEDDMELAEILTEYLENYDIEVITAEEPYIGLSTLNTSKFDLVILDLTLPGMDGL 61 IL+ +DD + +L + L +V + DLV+ D+ +P + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 62 EVCKEIRK-NHNIPIIISSARHDITDKVNALDNGADDYLPKPYDPQELLARIKSHL--RR 118 ++ I+K ++P+++ SA++ + A + GA DYLPKP+D EL+ I L + Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 119 QNVTPLNESKNLNKDLV 135 + + L + LV Sbjct: 124 RRPSKLEDDSQDGMPLV 140
>BINARYTOXINB#Binary toxin B family signature. Length = 764 Score = 30.8 bits (69), Expect = 0.010 Identities = 19/113 (16%), Positives = 45/113 (39%), Gaps = 10/113 (8%) Query: 31 YKNKKETLILNEVKSLKEIKMGIYMKARMNGLDSISSLTKEKGVHACIVLKNGEKIYKDF 90 + + I +E + + ++K + + + ++ H + + + E I K Sbjct: 74 IPSSELENIPSENQYFQSAIWSGFIKVKKSDEYTFAT---SADNHVTMWVDDQEVINKAS 130 Query: 91 DCQKIDKSKNVNLISGKVAIFEKIQYMDDNTTDELSHADIFLVGKDIKAEILS 143 + K + L G++ KIQY +N T++ ++ K E++S Sbjct: 131 NSNK------IRLEKGRLYQI-KIQYQRENPTEKGLDFKLYWTDSQNKKEVIS 176
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 630 bits (1626), Expect = 0.0 Identities = 262/1036 (25%), Positives = 467/1036 (45%), Gaps = 42/1036 (4%) Query: 1 MIKTAINRPITTLMIFLSLVVFGIYSLKTMNVNLYPQVNIPIVKI-TTYANGDMNYIKTK 59 M I RPI ++ + L++ G ++ + V YP + P V + Y D ++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 60 ITQKIEDEISSIEGIKKIYSTSF-DNLSVVSIEFELNKDLESATNDVRDKMQKAR----- 113 +TQ IE ++ I+ + + STS +++ F+ D + A V++K+Q A Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 114 VGANYEIEKLNGLSSSVFSLFITRLDGNETK--LMQEIDDVAKPFLERISGVSKVKTNGF 171 I SS + + T+ + + K L R++GV V+ G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 172 LEPAVKILLDRFKLDKNALSANEVANLIKVENLKAPLGKIENE------QIQMAIKSNFS 225 + A++I LD L+K L+ +V N +KV+N + G++ Q+ +I + Sbjct: 181 -QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 226 AKSIDEIRNLTIK-----QGVFLKDIASVDLSYKDANEAAIMDKKSGVLLGLELAPDANA 280 K+ +E +T++ V LKD+A V+L ++ N A ++ K LG++LA ANA Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 281 LTVIALAKSKLDQFKSLLGSEYDVKIAYDKSEVIQKHIDQTAFDMILGILLTIVIVYLFL 340 L K+KL + + V YD + +Q I + + I+L +++YLFL Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 341 RNFSITIISVVAIPTSIVATFFIINALGYDINRLSLIALTLGIGIFIDDAIVVTENIASK 400 +N T+I +A+P ++ TF I+ A GY IN L++ + L IG+ +DDAIVV EN+ Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 401 LKDEP-NALKASFAGIKEIAFSVFAISLVLLCVFVPIAFMSGIVGKYFNSFAMSVAAGIV 459 + ++ +A+ + +I ++ I++VL VF+P+AF G G + F++++ + + Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 460 ISFFVSIFLVPTLSARFVNA-------KQSGFFLKSEPFFEALENFYEKILALALKFKLI 512 +S V++ L P L A + + GFF F+ N Y + L Sbjct: 480 LSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539 Query: 513 FLAITLVVVVCSFTLAKFVGGDFMPSEDNSEFNIYFKLDPSLSLQASKDKLKD--KISLI 570 +L I ++V L + F+P ED F +L + + ++ L L Sbjct: 540 YLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLK 599 Query: 571 NADPQVAYAYFILGYTDAKQ-PYLVKAYVRLKELKDRVNHE-RQNAIMQSFRDRLKS--D 626 N V + + G++ + Q A+V LK ++R E A++ + L D Sbjct: 600 NEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRD 659 Query: 627 DMSVIVADLPVVEGGDVQPVKLTITSENGKELEKFVPK----ISKMLKEINDATDVNSPE 682 + +VE G + + G + + + V Sbjct: 660 GFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNG 719 Query: 683 EDLLKRVQISIDEDKAKRLILDKASVASAVYSAFSQNEVSVFENENGKEYELYMRLDDKF 742 + + ++ +D++KA+ L + + + + +A V+ F + G+ +LY++ D KF Sbjct: 720 LEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDF-IDRGRVKKLYVQADAKF 778 Query: 743 RSDTDDILKTKIRSKEGFFVTLGDVATISFEQKPASISRFNRADEIKFLANTKNNAPLNS 802 R +D+ K +RS G V T + + R+N ++ Sbjct: 779 RMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSS-G 837 Query: 803 VANEISKKLDEILPANFKYKFLGFVELMDDTNASFIFTVSASAVLIYMVLAALYESFLLP 862 A + + L LPA Y + G + V+ S V++++ LAALYES+ +P Sbjct: 838 DAMALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIP 897 Query: 863 FLIMLAMPLAFCGVVIGLFISGNPFSLFVMVGVILLFGMVGKNAILVVDFANHF-ANNGI 921 +ML +PL GV++ + ++ MVG++ G+ KNAIL+V+FA G Sbjct: 898 VSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGK 957 Query: 922 EANEAVKMAAKKRLRAVLMTTFAMIFAMLPLALGRGAGFEANSPMAISIIFGLISSTLLS 981 EA MA + RLR +LMT+ A I +LPLA+ GAG A + + I ++ G++S+TLL+ Sbjct: 958 GVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLA 1017 Query: 982 LLVVPVLFAWVYNLDK 997 + VPV F + K Sbjct: 1018 IFFVPVFFVVIRRCFK 1033
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 38.3 bits (89), Expect = 2e-05 Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 10/87 (11%) Query: 5 IILMIFGIFSFASEEIFADFEVYAKQSSKLAFEG---------SGKVDKIFVDVSSHVKK 55 +M F + +F + E+ A + KL G + V +I V V+K Sbjct: 62 YFIMGFLVIAFILS-VLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRK 120 Query: 56 GDVLAILDQSSLEIALKKAKNDLELAK 82 GDVL L E K ++ L A+ Sbjct: 121 GDVLLKLTALGAEADTLKTQSSLLQAR 147 Score = 32.1 bits (73), Expect = 0.002 Identities = 33/217 (15%), Positives = 75/217 (34%), Gaps = 28/217 (12%) Query: 53 VKKGDV--LAILDQSSLEIALKKAKNDLELAKNASEFAKNTLSKFTQVRNVTSKQEFD-E 109 + K + A+L+Q E +A N+L + K+ E ++ + + Q F E Sbjct: 244 LHKQAIAKHAVLEQ---ENKYVEAVNELRVYKSQLEQIESEILS-AKEEYQLVTQLFKNE 299 Query: 110 VKYKFDEAILRVQSAQIAILNAQDRLKKAVLKAPFDGVIASKNV-ELGESASPLQPAFVL 168 + K + + + + ++R + +V++AP + V G + + V+ Sbjct: 300 ILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVI 359 Query: 169 NSEEAKILIA--IDEKYANLVKVGDTFKFKLDATSEEK----EVKIALIYPE-------- 214 E+ + + + K + VG K++A + K+ I + Sbjct: 360 VPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLG 419 Query: 215 ----IKRETRKFYAQAYDTG--LKPGMFGQGKVIIGE 245 + + + L GM ++ G Sbjct: 420 LVFNVIISIEENCLSTGNKNIPLSSGMAVTAEIKTGM 456
>PF06580#Sensor histidine kinase Length = 349 Score = 29.1 bits (65), Expect = 0.036 Identities = 9/53 (16%), Positives = 22/53 (41%), Gaps = 5/53 (9%) Query: 289 NKFGIAFKWKIFDFFATSKMSQAQKIALDEARLNLEYKRRENETKLKNLQSEI 341 N + F W + +F ++ +D+ ++ E +L L+++I Sbjct: 123 NVVVVTFMWSLL-YFGWHFFKNYKQAEIDQWKM----ASMAQEAQLMALKAQI 170
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 253 bits (648), Expect = 2e-87 Identities = 109/239 (45%), Positives = 161/239 (67%), Gaps = 1/239 (0%) Query: 5 LSLAVLFCVVFGADPALPTINLSLNSPANAEQLVNSLNVLLILTALALAPSLIFMMTSFL 64 ++ +L+ + A LP I S P + + L+ +T+L P+++ MMTSF Sbjct: 7 VAPVLLWLITPLAFAQLPGIT-SQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFT 65 Query: 65 RLVIVFSFLRQAMGTQQVPPSTVLISLAMVLTFFIMEPVGQKSYNDGIKPYIAEQIGYEE 124 R++IVF LR A+GT PP+ VL+ LA+ LTFFIM PV K Y D +P+ E+I +E Sbjct: 66 RIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQE 125 Query: 125 MLDKSLKPFKEFMVKNTREKDLALFFRIRNLQNPANIEEIPLSIAMSAFMISELKTSFEI 184 L+K +P +EFM++ TRE DL LF R+ N E +P+ I + A++ SELKT+F+I Sbjct: 126 ALEKGAQPLREFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVTSELKTAFQI 185 Query: 185 AFLLYLPFLVIDMVVSSVLMAMGMMMLPPVMISLPFKLLIFVLVDGWNLLIGNLVKSFH 243 F +++PFL+ID+V++SVLMA+GMMM+PP I+LPFKL++FVLVDGW LL+G+L +SF+ Sbjct: 186 GFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSFY 244
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 69.2 bits (169), Expect = 1e-15 Identities = 34/123 (27%), Positives = 55/123 (44%), Gaps = 14/123 (11%) Query: 124 VRLPAAMLFDKDSAEISGEDAKLFLKRIGMIVAKMPNEVKVDIIGHTDNIEPNKDSAYKN 183 L + +LF+ + A + E + + P + V ++G+TD I AY Sbjct: 215 FTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGS---DAY-- 269 Query: 184 NWQLSTARALSVVEQLSSDGVPQNRLIASGKASFDPIATNNTEEGR---------AKNNR 234 N LS RA SVV+ L S G+P +++ A G +P+ N + + A + R Sbjct: 270 NQGLSERRAQSVVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRR 329 Query: 235 VEI 237 VEI Sbjct: 330 VEI 332
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 49.2 bits (117), Expect = 6e-09 Identities = 11/42 (26%), Positives = 25/42 (59%) Query: 220 EMSNVQLVEEMTDLITGQRAYEANSKAITTSDSMLEIVNGLK 261 +S V L EE +L Q+ Y AN++ + T++++ + + ++ Sbjct: 505 SISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINIR 546 Score = 45.3 bits (107), Expect = 1e-07 Identities = 10/35 (28%), Positives = 19/35 (54%) Query: 4 SLYTAATGMIAQQTQIDVTSHNIANVNTYGYKKNR 38 + A +G+ A Q ++ S+NI++ N GY + Sbjct: 3 LINNAMSGLNAAQAALNTASNNISSYNVAGYTRQT 37
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 35.3 bits (81), Expect = 2e-04 Identities = 11/40 (27%), Positives = 19/40 (47%) Query: 3 NGYYQATAGMVTQFNRLNVISNNLANVNTIGYKRNDVVIG 42 + A +G+ LN SNN+++ N GY R ++ Sbjct: 2 SLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMA 41
>FLAGELLIN#Flagellin signature. Length = 507 Score = 54.3 bits (130), Expect = 1e-10 Identities = 39/155 (25%), Positives = 65/155 (41%), Gaps = 10/155 (6%) Query: 16 YLDQAKNSEKKALNAISANSEI---KASGANLQIAESLLSQTNVLNEGLANANDMIGMLQ 72 L+++++S A+ +S+ I K A IA S L + NAND I + Q Sbjct: 16 NLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQASRNANDGISIAQ 75 Query: 73 IADSTLLNLSKSTDRIGELSSKLTNPTLSANEQKGIKGEINALRSAMSDSVKEAKFNGKN 132 + L ++ + R+ ELS + TN T S ++ K I+ EI + + +FNG Sbjct: 76 TTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEIDRVSNQTQFNGVK 135 Query: 133 VFDAELGFFAGESTKSINLGTNALLNVKDDGSNAD 167 V ++ I +G N + D D Sbjct: 136 VLS-------QDNQMKIQVGANDGETITIDLQKID 163
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 59.9 bits (145), Expect = 4e-12 Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 7/75 (9%) Query: 226 LSSSVLFDKGSAVLKEEVKEELKATLSKYFDVLLNDKDIASNIDQIIIEGFTDSDGSYIY 285 L S VLF+ A LK E + L S+ ++ D +++ G+TD GS Y Sbjct: 217 LKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDG-------SVVVLGYTDRIGSDAY 269 Query: 286 NLELSQKRAYAVMEF 300 N LS++RA +V+++ Sbjct: 270 NQGLSERRAQSVVDY 284