>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 31.3 bits (70), Expect = 0.032 Identities = 36/173 (20%), Positives = 71/173 (41%), Gaps = 19/173 (10%) Query: 121 QEESQLKERILKRKNEKIILNVNFIGEEVLGEEEANARFEKY---SQALKSNYIQYISIK 177 Q+ S+ ++ + + EK+ F+ E+ + + Y S+ K Y + Sbjct: 118 QDLSEEEKNSMNSRGEKVPFASRFVFEKKRETPKLIINIKDYAINSEQSKEVYYEIGKGI 177 Query: 178 ITTIFSQINILDFEY-----SKKEIVKRLDALYALALEEEKKQGMPKFINLDMEEFRDLE 232 I S+ LD E+ S + D L++ +E K + K I+++ ++ Sbjct: 178 SLDIISKDKSLDPEFLNLIKSLSDDSDSSDLLFSQKFKE-KLELNNKSIDINF-----IK 231 Query: 233 LTVESFMESIAK-----FDLNAGIVLQAYIPDSYEYLKKLHAFSKERVLKGLK 280 + F + + F + VL+ Y PD +EY+ KL E++ + LK Sbjct: 232 ENLTEFQHAFSLAFSYYFAPDHRTVLELYAPDMFEYMNKLEKGGFEKISESLK 284
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 40.4 bits (94), Expect = 5e-06 Identities = 33/149 (22%), Positives = 54/149 (36%) Query: 2 KKNQKLTADKENLTKEKTDLTNKNAELQRQVKDLQDSKQVLENVKTDLTNENTKLKNEKT 61 + +A + L EK L + A+L++ ++ + L E L+ + Sbjct: 134 NFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQA 193 Query: 62 ELTEKNQRLTTEKTELNNKITGLSTEKDNLTRDKENLTAALSTAKGQAEQTSQKLNELER 121 EL + + T + KI L EK L K +L AL A + S K+ LE Sbjct: 194 ELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEA 253 Query: 122 RHAPYQKLEKLYEVFLEVKDRLNFNFVAT 150 A + + E LE + A Sbjct: 254 EKAALEARQAELEKALEGAMNFSTADSAK 282 Score = 31.6 bits (71), Expect = 0.003 Identities = 22/119 (18%), Positives = 38/119 (31%) Query: 6 KLTADKENLTKEKTDLTNKNAELQRQVKDLQDSKQVLENVKTDLTNENTKLKNEKTELTE 65 L A+K L K DL + LE K L +L+ Sbjct: 215 TLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMN 274 Query: 66 KNQRLTTEKTELNNKITGLSTEKDNLTRDKENLTAALSTAKGQAEQTSQKLNELERRHA 124 + + + L + L EK +L + L A + + + + + +LE H Sbjct: 275 FSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQ 333
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 35.2 bits (81), Expect = 2e-04 Identities = 24/146 (16%), Positives = 44/146 (30%), Gaps = 19/146 (13%) Query: 83 ELTHKNAALTEKTAELKTENDKLNHLVIALNNEQGSLKQERAQLQEERGFLEELCANLEK 142 + K L +K AE T ++N N K +L Sbjct: 201 QKYQKELNLDKKRAERLTVLARIN----RYENLSRVEKSRLDDFS-----------SLLH 245 Query: 143 ENQHLTDKLKKLESAQKNLENTNNQLRQSLENSNTQLAQAKEKIAIEKTELEREIACLKS 202 + + + E+ N + LE +++ AKE+ + + EI L Sbjct: 246 KQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEI--LDK 303 Query: 203 LEGMEAKSELDLHNRRLASANQDLKR 228 L + + L LA + + Sbjct: 304 LR--QTTDNIGLLTLELAKNEERQQA 327
>PF08280#M protein trans-acting positive regulator Length = 530 Score = 27.1 bits (60), Expect = 0.048 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 10/57 (17%) Query: 16 IMVFKRAKDKGLIPITEGFAPLKEGFL-----KSFKE----RCNVEFLENLDLLFLY 63 + +KR + IP T F LK+ F+ KS ++ C + F DL +LY Sbjct: 237 ALSWKRHQFSVTIPQTRIFQQLKKLFVYDSLKKSSRDIIETYCQLNFSAG-DLDYLY 292
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 30.8 bits (69), Expect = 0.014 Identities = 12/66 (18%), Positives = 29/66 (43%) Query: 285 ALESFTEKIKEAPNDSNAVNEAFDSLETELERVTENLSQKIDPVLERNEDYAQKALEYRE 344 A+E +K+ A ++ ++ +L + L ++ + + + AQ + +Y+E Sbjct: 190 AVEIAQKKLSAAQSEVVKMDGEIKTLNSRLSSSIHARDAEMKTLAGKRNELAQASAKYKE 249 Query: 345 FLESRK 350 E K Sbjct: 250 LDELVK 255
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 1045 bits (2703), Expect = 0.0 Identities = 354/569 (62%), Positives = 443/569 (77%), Gaps = 4/569 (0%) Query: 3 KISRKEYVSMYGPTTGDKVRLGDTDLIAEVEHDYTIYGEELKFGGGKTLREGMSQSN-NP 61 ++SR Y +M+GPT GDKVRL DT+L EVE D+T +GEE+KFGGGK +R+GM QS Sbjct: 4 RMSRAAYANMFGPTVGDKVRLADTELFIEVEKDFTTHGEEVKFGGGKVIRDGMGQSQVTR 63 Query: 62 SKEELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEAL 121 +D +ITNALI+D+ GI KADIG+KDG+IA IGK GN DMQ GV + VGP TE + Sbjct: 64 EGGAVDTVITNALILDHWGIVKADIGLKDGRIAAIGKAGNPDMQPGV--TIIVGPGTEVI 121 Query: 122 AGEGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKW 181 AGEG IVTAGG+D+HIHFI PQQI A SG+T M+GGGTGPA GT ATT TPG ++ Sbjct: 122 AGEGKIVTAGGMDSHIHFICPQQIEEALMSGLTCMLGGGTGPAHGTLATTCTPGPWHIAR 181 Query: 182 MLRAAEEYSMNLGFLAKGNASNDASLADQIEAGAIGFKIHEDWGTTPSAINHALDVADKY 241 M+ AA+ + MNL F KGNAS +L + + GA K+HEDWGTTP+AI+ L VAD+Y Sbjct: 182 MIEAADAFPMNLAFAGKGNASLPGALVEMVLGGATSLKLHEDWGTTPAAIDCCLSVADEY 241 Query: 242 DVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPASTN 301 DVQV IHTDTLNE+G VEDT+AAI GRT+H +HTEGAGGGHAPDII++ G+ N++P+STN Sbjct: 242 DVQVMIHTDTLNESGFVEDTIAAIKGRTIHAYHTEGAGGGHAPDIIRICGQPNVIPSSTN 301 Query: 302 PTIPFTVNTEAEHMDMLMVCHHLDKSIKEDVQFADSRIRPQTIAAEDTLHDMGIFSITSS 361 PT P+TVNT AEH+DMLMVCHHL +I ED+ FA+SRIR +TIAAED LHD+G FSI SS Sbjct: 302 PTRPYTVNTLAEHLDMLMVCHHLSPTIPEDIAFAESRIRKETIAAEDILHDIGAFSIISS 361 Query: 362 DSQAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISE 421 DSQAMGRVGEV RTWQTADK K++ GRLKEE GDNDNFR+KRY++KYTINPAIAHG+S Sbjct: 362 DSQAMGRVGEVAIRTWQTADKMKRQRGRLKEETGDNDNFRVKRYIAKYTINPAIAHGLSH 421 Query: 422 YVGSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPVYYREMFAH 481 +GS+EVGK ADLVLW+PAFFGVKP+M++ GG IA + MGD NASIPTPQPV+YR MF Sbjct: 422 EIGSLEVGKRADLVLWNPAFFGVKPDMVLLGGTIAAAPMGDPNASIPTPQPVHYRPMFGA 481 Query: 482 HGKAKYDANITFVSQAAYDKGIKEELGLERQVLPVKNCR-NITKKDMQFNDTTAHIEVNP 540 +G+++ ++++TFVSQA+ D G+ LG+ ++++ V+N R I K M N T HIEV+P Sbjct: 482 YGRSRTNSSVTFVSQASLDAGLAGRLGVAKELVAVQNTRGGIGKASMIHNSLTPHIEVDP 541 Query: 541 ETYHVFVDGKEVTSKPANKVSLAQLFSIF 569 ETY V DG+ +T +PA + +AQ + +F Sbjct: 542 ETYEVRADGELLTCEPATVLPMAQRYFLF 570
>FLAGELLIN#Flagellin signature. Length = 507 Score = 39.3 bits (91), Expect = 4e-05 Identities = 36/277 (12%), Positives = 77/277 (27%), Gaps = 7/277 (2%) Query: 51 SKLTSDSPTQQQAQTQAQNTASSDSKEATTLENTASTDNTTATTDEAYTTSTDTTVADAA 110 L D + S K T + A N + TDTT Sbjct: 165 KSLGLDGFNVNGPKEATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVP 224 Query: 111 KQVETDNTAVQNDEKTLKTDVAKVQADASTKDFDETTFKADQQAEQTAETDLQKAEKTFD 170 +V + Q + + A + KA A + + K Sbjct: 225 DKVYVNAANGQLTTDDAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVT 284 Query: 171 TDQSTLNTDLQDQTKTPTPPAKKDE------TSGTPSASGSSMASQLTKDTTMVNSLKSV 224 T + + + T +K T+G + +++ S T++VN + Sbjct: 285 FTIDTKTGNDGNGKVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTF 344 Query: 225 SVSGMNTTLSGVETMSQQTATISNLLSGNPNLGSVIPNAQGLNSAFSALESAQNTLKGYL 284 N + + + + ++ N + + A + + Sbjct: 345 DDKTKNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVST 404 Query: 285 NSSSATIGQLTNGSNAVVGALDKAINQVDMALADLSA 321 + + + ++D A+++VD + L A Sbjct: 405 LINEDAAAAKK-STANPLASIDSALSKVDAVRSSLGA 440
>LUXSPROTEIN#Bacterial autoinducer-2 (AI-2) production protein LuxS signature. Length = 171 Score = 225 bits (575), Expect = 6e-79 Identities = 57/145 (39%), Positives = 91/145 (62%), Gaps = 7/145 (4%) Query: 5 VESFNLDHTKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPNQDHMDMPSLHSLEHLVAEI 64 ++SF +DHT++ AP VRVA + GD I +D+RF PN+D + +H+LEHL A Sbjct: 3 LDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGF 62 Query: 65 IRNHA----SYVVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKAK---EVPAS 117 +RNH ++D SPMGC+TGFY++++ + ++ + M+DVLK + ++P Sbjct: 63 MRNHLNGDSVEIIDISPMGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVENQNKIPEL 122 Query: 118 NEKQCGWAANHTLEGAQNLARAFLD 142 NE QCG AA H+L+ A+ +A+ L+ Sbjct: 123 NEYQCGTAAMHSLDEAKQIAKNILE 147
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 44.8 bits (106), Expect = 5e-07 Identities = 24/184 (13%), Positives = 65/184 (35%), Gaps = 18/184 (9%) Query: 37 LAQQREFEKEVNEKRAQYQSYFKNLEQKEEALKERAKEQQAQFDDAVKQASVLALQDERA 96 + E + + + Q+ ++ QKE L ++ E+ + ++ ++ R Sbjct: 178 NVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRL 237 Query: 97 KIIEEARKNAFLEQQKGLELLQKELDEKSKQVQELHQKEAEIERLKRENNEAESRLKAEN 156 + + LE + + E EL ++++E+++ E A+ + Sbjct: 238 DDFSSLLHKQAIAKHAVLEQ-ENKYVEAV---NELRVYKSQLEQIESEILSAKEEYQLVT 293 Query: 157 EKKLNEKLDLEREKIEKALHEKNELKFKQQEEQLEMLRNELKNAQRKAELSSQQLQGEVQ 216 + + E ++K + +L + + +A +S +VQ Sbjct: 294 Q-------LFKNEILDK--LRQTTDNIGLLTLELAKNEERQQASVIRAPVS-----VKVQ 339 Query: 217 ELAI 220 +L + Sbjct: 340 QLKV 343
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 28.6 bits (63), Expect = 0.016 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 9/63 (14%) Query: 50 YNRVDDEPILNHERFMQPDYVLVIDPGLVFIENIFANEKEDTTYIITSYLSKEELFEKKP 109 ++R ++P E F P+ + + N+ A+EK D ++++ L E FEK P Sbjct: 293 HSRSGEQPKGFTESFKAPE---------LGVGNLGASEKSDVFLVVSTLLHCIEGFEKNP 343 Query: 110 ELK 112 E+K Sbjct: 344 EIK 346
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 35.3 bits (81), Expect = 7e-04 Identities = 12/33 (36%), Positives = 20/33 (60%) Query: 2 NDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGY 34 + + NA SG+ Q +++ SNNI++ N GY Sbjct: 1 SSLINNAMSGLNAAQAALNTASNNISSYNVAGY 33 Score = 33.0 bits (75), Expect = 0.004 Identities = 10/48 (20%), Positives = 20/48 (41%) Query: 557 IRHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKEAISLK 604 + ++ S VN NL Q+ Y NA+ + + I+++ Sbjct: 499 LSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINIR 546
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 47.4 bits (112), Expect = 1e-07 Identities = 46/230 (20%), Positives = 76/230 (33%), Gaps = 9/230 (3%) Query: 283 KRDKTLSKKKSEKTQTKTQTTAPSIAPENAPKIPLKTPPLMPLIGANPPNDNAPTPLEKE 342 KR++T+ T Q PS+ N + P+ P A TP E Sbjct: 987 KRNQTVDTTNIT-TPNNIQADVPSVPSNNEEIARVDEAPVPPPAPA--------TPSETT 1037 Query: 343 EKTKEVSDNKEKTKESSNSAQSAQNAQASDKASENKSTAPKETIKHFTQQLKQEIQEYKP 402 E E S + KT E + + AQ + A E KS T + Q E +E + Sbjct: 1038 ETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQT 1097 Query: 403 PMSKISMDLFPKELGKVEVIIQKVGKNLKVSVISHNNSLQTFLDNQQDLKNSLNALGFDG 462 +K + + +E KVE + + V +T + + + + Sbjct: 1098 TETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKE 1157 Query: 463 VDLSFSQDSSKEQPKESFKEPFREQELTPLKENALKSYQENTDNENQETS 512 + + EQP + + N S EN +N T+ Sbjct: 1158 PQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATT 1207 Score = 37.4 bits (86), Expect = 2e-04 Identities = 52/305 (17%), Positives = 90/305 (29%), Gaps = 24/305 (7%) Query: 20 KNEVKDAKNAP----KSASKDFSKILNQKISKDKTAPKESPNPNALKATPQDAKENAKAL 75 +N+ D N A N++I++ AP P P T + EN+K Sbjct: 988 RNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQE 1047 Query: 76 EKTPTLPHQHA------QKLAKDQQAPTLKDLLNHPKTHPTAKHEAQHETHEAFETNPKN 129 KT Q A + + +K + + + +T E ET Sbjct: 1048 SKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVE 1107 Query: 130 PNETLSKNEKKPNEVTSNAHQTNLPNKNPITPNHVNNANKTPTTPTYNAKEPKTLK---- 185 E +K EV Q + P + PT N KEP++ Sbjct: 1108 KEEKAKVETEKTQEVPKVTSQVS-PKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTA 1166 Query: 186 DIQTLSQKHDLNASNIQATTTPENKTPLNASDQFALKTTQTPTNHTLAKNDAKNTANLSS 245 D + +++ N +T N + T ++ + S Sbjct: 1167 DTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRS 1226 Query: 246 VLQSLEKKESHNKEHTTPQNNEKKTPPLKEALQMNAIKRDKTLSKKKSEKTQTKTQTTAP 305 V + HN E T +N++ T L + N + K Q Sbjct: 1227 V-----RSVPHNVEPATTSSNDRSTVALCDLTSTNTN----AVLSDARAKAQFVALNVGK 1277 Query: 306 SIAPE 310 +++ Sbjct: 1278 AVSQH 1282
>ACETATEKNASE#Acetate kinase family signature. Length = 400 Score = 91.4 bits (227), Expect = 2e-25 Identities = 41/99 (41%), Positives = 61/99 (61%), Gaps = 6/99 (6%) Query: 1 MEILVLNLGSSSIKFKLFGMKENKPLASGLAEKIGEEIGQLKIKSHLHHNDQELKEKLVI 60 M+ILV+N GSSS+K++L K+ LA GLAE+IG L N +++K K + Sbjct: 1 MKILVINCGSSSLKYQLIESKDGNVLAKGLAERIGINDSLLTHN----ANGEKIKIKKDM 56 Query: 61 KDNASGLLMIRENLT--KMGIIKDFNQIDAIGHRVVQGG 97 KD+ + ++ + L G+IKD ++IDA+GHRVV GG Sbjct: 57 KDHKDAIKLVLDALVNSDYGVIKDMSEIDAVGHRVVHGG 95
>ACETATEKNASE#Acetate kinase family signature. Length = 400 Score = 247 bits (631), Expect = 5e-84 Identities = 93/166 (56%), Positives = 121/166 (72%) Query: 2 DEKVMREIGNLSILAPLHNPANLAGIEFVQKAHPHIPQIAVFDTAFHATMPSYAYMYALP 61 + V++ I + LAPLHNPAN+ GI+ + P +P +AVFDTAFH TMP YAY+Y +P Sbjct: 105 TDDVLKAITDCIELAPLHNPANIEGIKACTQIMPDVPMVAVFDTAFHQTMPDYAYLYPIP 164 Query: 62 YELYEKYQIRRYGFHGTSHHYVAKEAAKFLNIAYEEFNAISLHLGNGSSVAAIQKGKSVD 121 YE Y KY+IR+YGFHGTSH YV++ AA+ LN E I+ HLGNGSS+AA++ GKS+D Sbjct: 165 YEYYTKYKIRKYGFHGTSHKYVSQRAAEILNKPIESLKIITCHLGNGSSIAAVKNGKSID 224 Query: 122 TSMGLTPLEGLIMGTRCGDIDPTVVEYTEQCANKSLEEVMKMLNHE 167 TSMG TPLEGL MGTR G IDP+++ Y + N S EEV+ +LN + Sbjct: 225 TSMGFTPLEGLAMGTRSGSIDPSIISYLMEKENISAEEVVNILNKK 270
>ACETATEKNASE#Acetate kinase family signature. Length = 400 Score = 122 bits (307), Expect = 1e-36 Identities = 47/117 (40%), Positives = 70/117 (59%), Gaps = 2/117 (1%) Query: 1 MRNIEARK-EKGDKEAKLAFEMCAYRIKKYIGAYMVVLKKVDAILFTGGLGENYSALRES 59 R++E + GDK A+LA + AYR+KK IG+Y + VD I+FT G+GEN +RE Sbjct: 283 FRDLEDAAFKNGDKRAQLALNVFAYRVKKTIGSYAAAMGGVDVIVFTAGIGENGPEIREF 342 Query: 60 VCEGLENLGIALCKPTNDNPGSGLVDLSQPNTKIQVLRIPTDEELEIALQAKKVLEK 116 + +GLE LG L K N G +S ++K+ V+ +PT+EE IA +K++E Sbjct: 343 ILDGLEFLGFKLDKEKNKVRGEE-AIISTADSKVNVMVVPTNEEYMIAKDTEKIVES 398
>SECA#SecA protein signature. Length = 901 Score = 28.3 bits (63), Expect = 0.013 Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 2/43 (4%) Query: 71 RIARKNLSKMSEEDFKKMREEVRK--ELEEKTKGLSDEEIKAK 111 ++ K ++ ++MR+ V +E + + LSDEE+K K Sbjct: 4 KLLTKVFGSRNDRTLRRMRKVVNIINAMEPEMEKLSDEELKGK 46
>PF01206#SirA family protein Length = 76 Score = 26.6 bits (59), Expect = 0.004 Identities = 7/22 (31%), Positives = 12/22 (54%) Query: 19 SGKEIEVLSTKPEMRIDISSFC 40 +G+ + V++T P D SF Sbjct: 31 AGEVLYVMATDPGSVKDFESFS 52
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 1896 bits (4913), Expect = 0.0 Identities = 1080/1182 (91%), Positives = 1108/1182 (93%), Gaps = 36/1182 (3%) Query: 1 MTNETINQQPQTEAAFNPQQFINNLQVAFLKLDNAVASFDPDQKPIVDKNDRDNRQAFDG 60 MTNETI+QQPQTEAAFNPQQFINNLQVAFLK+DNAVAS+DPDQKPIVDKNDRDNRQAF+G Sbjct: 1 MTNETIDQQPQTEAAFNPQQFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNRQAFEG 60 Query: 61 ISQLREEYSNKAIKNPTKKNQYFSDFINKSNDLINKDNLIDVESSTKSFQKFGDQRYRIF 120 ISQLREEYSNKAIKNPTKKNQYFSDFINKSNDLINKDNLIDVESSTKSFQKFGDQRYRIF Sbjct: 61 ISQLREEYSNKAIKNPTKKNQYFSDFINKSNDLINKDNLIDVESSTKSFQKFGDQRYRIF 120 Query: 121 TSWVSHQNDPSKINTRSIRNFMEHTIQPPISDDKEKAEFLKSAKQSFAGIIIGNQIRTDQ 180 TSWVSHQNDPSKINTRSIRNFME+ IQPPI DDKEKAEFLKSAKQSFAGIIIGNQIRTDQ Sbjct: 121 TSWVSHQNDPSKINTRSIRNFMENIIQPPILDDKEKAEFLKSAKQSFAGIIIGNQIRTDQ 180 Query: 181 KFMGVFDESLKERQEAEKNGEPTGGDWLDIFLSFIFDKKRSSDVKEAINQEPVPHVQPDI 240 KFMGVFDESLKERQEAEKNGEPTGGDWLDIFLSFIFDKK+SSDVKEAINQEPVPHVQPDI Sbjct: 181 KFMGVFDESLKERQEAEKNGEPTGGDWLDIFLSFIFDKKQSSDVKEAINQEPVPHVQPDI 240 Query: 241 ATTTTHIQGLPPESRDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNALS 300 ATTTT IQGLPPE+RDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNALS Sbjct: 241 ATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNALS 300 Query: 301 SVLMGSHNGIEPEKVSLLYAGNGGFGAKHDWNATVGYKDQQGNNVATIINVHMKNGSGLV 360 SVLMGSHNGIEPEKVSLLY GNGG GA+HDWNATVGYKDQQGNNVATIINVHMKNGSGLV Sbjct: 301 SVLMGSHNGIEPEKVSLLYGGNGGPGARHDWNATVGYKDQQGNNVATIINVHMKNGSGLV 360 Query: 361 IAGGEKGINNPSFYLYKEDQLTGSQRALSQEEILNKVDFMEFLAQNNAKLDNLSEKEKEK 420 IAGGEKGINNPSFYLYKEDQLTGSQRALSQEEI NK+DFMEFLAQNNAKLDNLSEKEKEK Sbjct: 361 IAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIQNKIDFMEFLAQNNAKLDNLSEKEKEK 420 Query: 421 FRNEIKDFQKDSKAYLDALGNDRIAFVSKKDTKHSALITEFGKGDLSYTLKDYGKKADKA 480 FR EIKDFQKDSKAYLDALGNDRIAFVSKKDTKHSALITEFG GDLSYTLKDYGKKADKA Sbjct: 421 FRTEIKDFQKDSKAYLDALGNDRIAFVSKKDTKHSALITEFGNGDLSYTLKDYGKKADKA 480 Query: 481 LDREKNVTLQGNLKHDGVMFVDYSNFKYTNASKNPNKGVGATNGVSHLDAGFNKVAVFNL 540 LDREKNVTLQG+LKHDGVMFVDYSNFKYTNASKNPNKGVG TNGVSHL+ GFNKVA+FNL Sbjct: 481 LDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEVGFNKVAIFNL 540 Query: 541 PDLNNLAITSFVRRNLEDKLTTKGLSLQEANKLIKDFLSSNKELVGKALNFNKAVAEAKS 600 PDLNNLAITSFVRRNLEDKLTTKGLS QEANKLIKDFLSSNKELVGK LNFNKAVA+AK+ Sbjct: 541 PDLNNLAITSFVRRNLEDKLTTKGLSPQEANKLIKDFLSSNKELVGKTLNFNKAVADAKN 600 Query: 601 TGNYDEVKKAQKDLEKSLRKREHLEKEVEKKLESKSGNKNKMEAKSQANSQKDEIFALIN 660 TGNYDEVKKAQKDLEKSLRKREHLEKEVEKKLESKSGNKNKMEAK+QANSQKDEIFALIN Sbjct: 601 TGNYDEVKKAQKDLEKSLRKREHLEKEVEKKLESKSGNKNKMEAKAQANSQKDEIFALIN 660 Query: 661 KEANRDARAIAYSQNLKGIKRELSDKLENINKDLKDFSKSFDEFKNGKNKDFSKAEETLK 720 KEANRDARAIAY+QNLKGIKRELSDKLEN+NK+LKDF KSFDEFKNGKNKDFSKAEETLK Sbjct: 661 KEANRDARAIAYAQNLKGIKRELSDKLENVNKNLKDFDKSFDEFKNGKNKDFSKAEETLK 720 Query: 721 ALKGSVKDLGINPEWISKVENLNAALNDFKNGKNKDFSKVTQAKSDLENSVKDVIINQKI 780 ALKGSVKDLGINPEWISKVENLNAALN+FKNGKNKDFSKVTQAKSDLENSVKDVIINQK+ Sbjct: 721 ALKGSVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSVKDVIINQKV 780 Query: 781 TDKVDDLNQAVSVAKATGDFSRVEQALADLKNFSKEQLAQQAQKNESFNVGKKSEIYQSV 840 TDKVD+LNQAVSVAKATGDFSRVEQALADLKNFSKEQLAQQAQKNES N KKSEIYQSV Sbjct: 781 TDKVDNLNQAVSVAKATGDFSRVEQALADLKNFSKEQLAQQAQKNESLNARKKSEIYQSV 840 Query: 841 KSGVNGTLVGNGLSGIEATALAKNFSDIKKELNEKFKNFNNNNNGLKNSTEPIYAKVNKK 900 K+GVNGTLVGNGLS EAT L+KNFSDIKKELN K NFNNNNN EPIYAKVNKK Sbjct: 841 KNGVNGTLVGNGLSQAEATTLSKNFSDIKKELNAKLGNFNNNNN-NGLKNEPIYAKVNKK 899 Query: 901 KTGQVASPEEPIYTQVAKKVNAKIDRLNQIASGLGGVGQAAGFPLKKHDKVDDLSKVGRS 960 K GQ AS EEPIY QVAKKVNAKIDRLNQIASGLG VGQAAGFPLK+HD Sbjct: 900 KAGQAASLEEPIYAQVAKKVNAKIDRLNQIASGLGVVGQAAGFPLKRHD----------- 948 Query: 961 VSPEPIYATIDDLGGPFPLKKHAKVDDLSKVGLSRNQELAQKIDNLNQAVLEAKAGFFGN 1020 KVDDLSKVGLSRNQELAQKIDNLNQAV EAKAGFFGN Sbjct: 949 -----------------------KVDDLSKVGLSRNQELAQKIDNLNQAVSEAKAGFFGN 985 Query: 1021 LERTVDKLKDSTKHNPMNLWAESAKKVPASLSAKLDNYATNSHTRINSNIQNGAINEKAT 1080 LE+T+DKLKDSTKHNPMNLW ESAKKVPASLSAKLDNYATNSH RINSNI+NGAINEKAT Sbjct: 986 LEQTIDKLKDSTKHNPMNLWVESAKKVPASLSAKLDNYATNSHIRINSNIKNGAINEKAT 1045 Query: 1081 GMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDKIGFNQKNMKDYSDSFKFSTKLNNAVKD 1140 GMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDKIGFNQKNMKDYSDSFKFSTKLNNAVKD Sbjct: 1046 GMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDKIGFNQKNMKDYSDSFKFSTKLNNAVKD 1105 Query: 1141 VKSGFTQFLSNAFSTG-YYCLARENAEHGIKNVNTKGGFQKS 1181 SGFTQFL+NAFST YYCLARENAEHGIKNVNTKGGFQKS Sbjct: 1106 TNSGFTQFLTNAFSTASYYCLARENAEHGIKNVNTKGGFQKS 1147
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 32.7 bits (74), Expect = 0.004 Identities = 37/183 (20%), Positives = 65/183 (35%), Gaps = 9/183 (4%) Query: 224 DEVCSPLRDEMVAMPSNDSVIQKPNIVAPYSLYRLKETNNANEAQPSPYATQTAPENSKE 283 D P +E +A + + P P N+ E++ Q A E + + Sbjct: 1006 DVPSVPSNNEEIARVDE-APVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQ 1064 Query: 284 KLIEELIANSQLIANEEEREKKLLAEKEKQEAELAKYKLKDLENQKKLKALEAELKKKNA 343 A S + AN + E + K+ + +E ++K K +K Sbjct: 1065 NREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAK----VETEKTQ 1120 Query: 344 KKPRVVEVPVSPQTSNSDETMRVVKEKENYNGLLVDKETTIKRSYEGTLISENSYSKKTP 403 + P+V VSP+ S ET++ E N V+ + +S T +K+T Sbjct: 1121 EVPKVTS-QVSPKQEQS-ETVQPQAEPARENDPTVNIKE--PQSQTNTTADTEQPAKETS 1176 Query: 404 LNP 406 N Sbjct: 1177 SNV 1179
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 37.4 bits (86), Expect = 6e-04 Identities = 42/242 (17%), Positives = 90/242 (37%), Gaps = 6/242 (2%) Query: 988 KNAKTEAEKKRCVKDLP-KDLQKKVLAKESVRVYLDCVSKAKTEAEKKECEKLLTPEARK 1046 + + E+ V + P ++ + V + ++KT + ++ T + R+ Sbjct: 1008 PSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNRE 1067 Query: 1047 LLEEAKESVKAYKDCVSRARNEKEKQECEKLLTPEAKKLLEQEVKKSVKAYLDCVSR-AR 1105 + +EAK +VKA A++ E +E + T E + ++E K V + Sbjct: 1068 VAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTS 1127 Query: 1106 NEKEKKECEKLLTPEARKFLENQALDCLKNAK----TEAEKKRCVKDLPKDLQKKVLAKE 1161 K+E + + P+A EN +K + T A+ ++ K+ ++++ V Sbjct: 1128 QVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTEST 1187 Query: 1162 SVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEEAKESVKAYLDCVSRARNEKEKKECE 1221 +V V N + + + K + SV++ V A + Sbjct: 1188 TVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTV 1247 Query: 1222 KL 1223 L Sbjct: 1248 AL 1249 Score = 35.0 bits (80), Expect = 0.004 Identities = 43/256 (16%), Positives = 85/256 (33%), Gaps = 17/256 (6%) Query: 1172 RARNEKEKKECEKLLTPEAKKLLEEAKESVKAYLDCVSRARNEKEKKECEKLLTPEARKL 1231 + NE+ + E + P A E E+V S+ + E+ E T + R++ Sbjct: 1011 PSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATET--TAQNREV 1068 Query: 1232 LEEAKESLKAYKDCLSQARNETERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSR-ARN 1290 +EAK ++KA A++ +E + + T E + ++E K V + Sbjct: 1069 AKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQ 1128 Query: 1291 EKEKQECEKLLTPEARKFLEKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKY 1350 KQE + + P+A E +++ + + + A E+ K Sbjct: 1129 VSPKQEQSETVQPQA------EPARENDPTVNIKEPQSQTNTTA--------DTEQPAKE 1174 Query: 1351 LQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKKAQNKQNQLSKTERLHQASEC 1410 E+ V + + +N Q N ++ NK + Sbjct: 1175 TSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNV 1234 Query: 1411 LDNLDDPTDQEAIEQC 1426 D+ + C Sbjct: 1235 EPATTSSNDRSTVALC 1250 Score = 34.7 bits (79), Expect = 0.005 Identities = 28/187 (14%), Positives = 69/187 (36%), Gaps = 4/187 (2%) Query: 630 RARNEKEKKECEKLLTPEARKKLEQQVLDCLKNAKTDEERKKCLKDLPKD--LQSDILAK 687 + NE+ + E + P A + +N+K + + + + + Q+ +AK Sbjct: 1011 PSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAK 1070 Query: 688 ESVKAYKDCVSQAKTEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSKAKNEAEKKE 747 E+ K + E ++ T E K+ E +E K + + + Sbjct: 1071 EAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVS 1130 Query: 748 CEKLLTPEAKKKLEEAKKSVKAYL--DCVSQAKTEAEKQECEKLLTPEAKKLLEQQALDC 805 ++ + + + E A+++ + SQ T A+ ++ K + ++ + + Sbjct: 1131 PKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVN 1190 Query: 806 LKNAKTE 812 N+ E Sbjct: 1191 TGNSVVE 1197 Score = 34.3 bits (78), Expect = 0.006 Identities = 42/242 (17%), Positives = 89/242 (36%), Gaps = 6/242 (2%) Query: 661 KNAKTDEERKKCLKDLPKDLQSDILAKESVKAYKDCVSQAKTEAEKKECEKLLTPEAKKL 720 + ++ E + + P + E+ + + Q EK E + T + Sbjct: 1008 PSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNRE 1067 Query: 721 LEEEAKESVKAYLDCVSKAKNEAEKKECEKLLT--PEAKKKLEEAKKSVKAYLDCVSQAK 778 + +EAK +VKA A++ +E KE + T +K E+AK + + Sbjct: 1068 VAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTS 1127 Query: 779 TEAEKQECEKLLTPEAKKLLEQQALDCLKNAK----TEAEKKRCVKDLPKDLQKKVLAKE 834 + KQE + + P+A+ E +K + T A+ ++ K+ ++++ V Sbjct: 1128 QVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTEST 1187 Query: 835 SVRVYLDCVSQAKTEAERKECEKLLTPEARKLLEEAKKSVKAYKDCVSRARNEKEKKECE 894 +V V + + + + K ++SV++ V A + Sbjct: 1188 TVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTV 1247 Query: 895 KL 896 L Sbjct: 1248 AL 1249 Score = 33.9 bits (77), Expect = 0.009 Identities = 45/256 (17%), Positives = 94/256 (36%), Gaps = 39/256 (15%) Query: 807 KNAKTEAEKKRCVKDLP-KDLQKKVLAKESVRVYLDCVSQAKTEAERKECEKLLTPEARK 865 + + E+ V + P ++ + V + ++KT + ++ T + R+ Sbjct: 1008 PSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNRE 1067 Query: 866 LLEEAKKSVKAYKDCVSRARNEKEKKECEKLLTPEARKLLEEAKKSVKAYLDCVSQAKTE 925 + +EAK +VKA A++ E KE + T E + +E K AK E Sbjct: 1068 VAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEK------------AKVE 1115 Query: 926 AEKKECEKLLTPEARKLLEEAKKSVKLFGLRISGKLSGKKRREIDSRPEARKLLENQALD 985 EK + E K + ++S K+ + +P+A EN Sbjct: 1116 TEKTQ-------------EVPKV---------TSQVSPKQEQSETVQPQAEPARENDPTV 1153 Query: 986 CLKNAK----TEAEKKRCVKDLPKDLQKKVLAKESVRVYLDCVSKAKTEAEKKECEKLLT 1041 +K + T A+ ++ K+ ++++ V +V V + + + Sbjct: 1154 NIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNS 1213 Query: 1042 PEARKLLEEAKESVKA 1057 + K + SV++ Sbjct: 1214 ESSNKPKNRHRRSVRS 1229
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 866 bits (2238), Expect = 0.0 Identities = 514/522 (98%), Positives = 516/522 (98%), Gaps = 1/522 (0%) Query: 1 MGQAFFKKIVNCFCLGYLFLSSVIEAAP-DIKNFNRGRVKVVNKKIAYLGDEKPITIWTS 59 MGQAFFKKIV CFCLGYLFLSS IEA DIKNFNRGRVKVVNKKIAYLGDEKPITIWTS Sbjct: 1 MGQAFFKKIVGCFCLGYLFLSSAIEAVALDIKNFNRGRVKVVNKKIAYLGDEKPITIWTS 60 Query: 60 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR 119 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR Sbjct: 61 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR 120 Query: 120 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL 179 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL Sbjct: 121 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL 180 Query: 180 ENLTNAMSNPQNLSNNKNLSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA 239 ENLTNAMSNPQNLSNNKNLSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA Sbjct: 181 ENLTNAMSNPQNLSNNKNLSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA 240 Query: 240 EETIKQRAKDKISIKTDKSQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD 299 EE ++QRAKDKISIKTDKSQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD Sbjct: 241 EEAVRQRAKDKISIKTDKSQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD 300 Query: 300 NFASAYLTVKLEYPQRHEVSSVIEEELKKREEAKRQRELIKQENLNTTAYINRVMMASNE 359 NFASAYLTVKLEYPQRHEVSSVIEEELKKREEAKRQRELIKQENLNTTAYINRVMMASNE Sbjct: 301 NFASAYLTVKLEYPQRHEVSSVIEEELKKREEAKRQRELIKQENLNTTAYINRVMMASNE 360 Query: 360 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF 419 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF Sbjct: 361 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF 420 Query: 420 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK 479 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK Sbjct: 421 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK 480 Query: 480 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK 521 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK Sbjct: 481 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK 522
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 118 bits (298), Expect = 7e-35 Identities = 44/205 (21%), Positives = 74/205 (36%), Gaps = 10/205 (4%) Query: 27 KLNKANRTFKRAFYL---SMALNVAAVTSIVMMMPLKKTDIFVYGIDRYTGEFKIVKRSD 83 KL A R+ K A+ + + AL A V ++ + PLK + +V +DR TGE I + Sbjct: 24 KLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIAAKLH 83 Query: 84 A-RQIVNSEAVVDSATSKFVSLLFGYSKNSLRDRKDQLMQYCDVSFQTQAMRMFNENIRQ 142 I EAV + +V G+ + + D +M Q + R + + Q Sbjct: 84 GDATITYDEAVRKYFLATYVRYREGWIAAAREEYFDAVMVMSARPEQDRWSRFYKTDNPQ 143 Query: 143 FVDKVRA-EAIISSNIQREKVKNSPLTRLTFFITIKITPDTMENYEYITKKQVTIYYDFA 201 + A + I + +F +T T TI Y Sbjct: 144 SPQNILANRTDVFVEI-KRVSFLGGNVAQVYFTKESVTGSNS----TKTDAVATIKYKVD 198 Query: 202 RGNSSQENLIINPFGFKVFDIQITD 226 S + + NP G++V + Sbjct: 199 GTPSKEVDRFKNPLGYQVESYRADV 223
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 29.0 bits (64), Expect = 0.028 Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 16/119 (13%) Query: 24 AINTALLPSEYKKLVALGFKKITTLYQRHDDKEITKEEKEFATNALREKLRNDRARAEQI 83 A+N AL+ +Y++ + K + D KE+ +++K EK + + +A++ Sbjct: 112 AVNFALMTRDYQEFL----KTKKLIVDAPDPKELEEQKKAL------EKEKEAKEQAQKA 161 Query: 84 QKNIEAFEKKNNSSVQKKAAKHRGLQELNETNANPLNDNPNGNSSTETKSNKDDNFDEM 142 QK+ K +++A L+ L +NP N + N N S K +++ D+M Sbjct: 162 QKD------KREKRKEERAKNRANLENLTNAMSNPQNLSNNKNLSELIKQQRENELDQM 214
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 32.9 bits (75), Expect = 0.008 Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 18/88 (20%) Query: 19 EVQKRQFQKIEELKADMQKGVNPFFKVLFDGGNRLFGFPETFIYSSI-------FILFVT 71 + K K+ EL+ +G+ +D F+ SI F + Sbjct: 301 DTAKAIKAKLAELQPFFPQGMK--VLYPYD--------TTPFVQLSIHEVVKTLFEAIML 350 Query: 72 IVLSVILF-QAYEPVLIVAIVIVLVALG 98 + L + LF Q LI I + +V LG Sbjct: 351 VFLVMYLFLQNMRATLIPTIAVPVVLLG 378
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 37.7 bits (87), Expect = 9e-05 Identities = 28/194 (14%), Positives = 57/194 (29%), Gaps = 13/194 (6%) Query: 234 EVRIKKQEVRIDSREIKREIKQEAIKEPKKANQ--STENAPTLEEKNYQKAERKLDAKEE 291 EV + Q V + I+ + P + + AP +E E Sbjct: 984 EVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAEN 1043 Query: 292 RRRLRDERKKAKATKKAMELEEKEKVHDERDERETEERRKALGMDQGNEKV------NAK 345 ++ + + K + A E + + + + + + + Q + K Sbjct: 1044 SKQ--ESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETK 1101 Query: 346 ENDQEIKQEATKKPSNENNATQQGENKPNSKEEKRRLKEERKKAKAEQRAREFEQRAKEH 405 E E +K E TQ+ + K+ E + R + KE Sbjct: 1102 ETAT---VEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEP 1158 Query: 406 QERDEKELEERRKA 419 Q + + + A Sbjct: 1159 QSQTNTTADTEQPA 1172
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 35.1 bits (80), Expect = 0.001 Identities = 37/216 (17%), Positives = 74/216 (34%), Gaps = 26/216 (12%) Query: 527 EDAEIVSKEVGEFTRQSKNYSTEKGQLV---------FGGSSSYSHEGRNLLTAQDIMNI 577 ++AE K E ++ K EK + ++ S E + + AQ ++ Sbjct: 141 KEAEAAEKAFQEAEQRRKEIEREKAETERQLKLAEAEEKRLAALSEEAKAVEIAQKKLSA 200 Query: 578 NSDEVIVIVTGAKATPLKLKANYWFKDKELLKRANLPIDLEVERQRVEE----------- 626 EV+ + K +L ++ +D E+ A +L + +E Sbjct: 201 AQSEVVKMDGEIKTLNSRLSSSIHARDAEMKTLAGKRNELAQASAKYKELDELVKKLSPR 260 Query: 627 ---PIQPTTEIETTPNQNKADLEPSNKGEKVENESNERNTNENNPTTPQELENSNLKESE 683 P+Q E T + A K ++V N + T Q + + S Sbjct: 261 ANDPLQNRPFFEATRRRVGAGKIREEKQKQVTASETRINRINADITQIQ---KAISQVSN 317 Query: 684 KDNESPITLENANENIEQGNHNEIDEILKKPLSEIS 719 N + A EN+++ +N ++ +K + Sbjct: 318 NRNAGIARVHEAEENLKKAQNNLLNSQIKDAVDATV 353
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 29.4 bits (66), Expect = 0.021 Identities = 8/61 (13%), Positives = 21/61 (34%), Gaps = 9/61 (14%) Query: 106 KASIAYIRD--------YEMRYVKARDEQGNLIPLKDKEGNLKHYSNG-EVIYENEKVPQ 156 + I ++ Y RY +++ ++ +G +H G V+ + + Sbjct: 236 SSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHAPTGTPVLVDGVRTMT 295 Query: 157 R 157 Sbjct: 296 V 296
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 31.6 bits (71), Expect = 0.011 Identities = 20/128 (15%), Positives = 44/128 (34%), Gaps = 9/128 (7%) Query: 435 NSTATQQENTKQNQAIEQNGTTQAKEPQSKQEPKKTLHPDE-------PWLDYDPKAHKG 487 N ++ T I QA P ++ DE P + Sbjct: 982 NPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVA 1041 Query: 488 LQERQKEEIQEKAQSNNSDEPWIEHGKRMQEKAKAHYQAMLEKEKAKELAKEQNNAQKEV 547 +Q+ + EK + + ++ + + ++AK++ +A + + + E Q Sbjct: 1042 ENSKQESKTVEKNEQDATET--TAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTE 1099 Query: 548 KKEMPTID 555 KE T++ Sbjct: 1100 TKETATVE 1107 Score = 30.0 bits (67), Expect = 0.029 Identities = 28/134 (20%), Positives = 48/134 (35%), Gaps = 7/134 (5%) Query: 384 KQQAKTL-KNLDSATQSVGVNAIK-EQNKANKNSEQPKNSQNEPRQETTNAQTNSTATQQ 441 KQ++KT+ KN AT++ N ++ K+N + N + ET QT T Sbjct: 1045 KQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETA 1104 Query: 442 ENTKQNQAIEQNGTTQAKEPQSKQEPKKTLHPDEPWLDYDPKAHKGLQERQKEEIQEKAQ 501 K+ +A + TQ + Q K + +P E ++ Q Sbjct: 1105 TVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPAR-----ENDPTVNIKEPQ 1159 Query: 502 SNNSDEPWIEHGKR 515 S + E + Sbjct: 1160 SQTNTTADTEQPAK 1173
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 28.1 bits (62), Expect = 0.006 Identities = 16/48 (33%), Positives = 27/48 (56%) Query: 46 SFQDPEKREEYIERLKKNHERKMILQDKQKEEQMRLYQAKKERESRQK 93 +FQ+ E+R + IER K ER++ L + +++ L + K E QK Sbjct: 149 AFQEAEQRRKEIEREKAETERQLKLAEAEEKRLAALSEEAKAVEIAQK 196
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 29.9 bits (67), Expect = 0.037 Identities = 18/145 (12%), Positives = 51/145 (35%), Gaps = 24/145 (16%) Query: 422 YDKTTDDYLKELSQ-FNQSDSNIKDNLKDMFADRETLEKDIKNAYDDLFNYPIDDVEAMT 480 + + ++ + S S++ ++D F + L + D Sbjct: 83 GLTARYEQMSKIDNMLSTSTSSLATQMQDFF-----------TSLQTLVSNAED-----P 126 Query: 481 SAIVSISAMNELLKVSHAINTLKERYNLIRTSNDLKILSLKEKMDIEKISKISSMLHKKA 540 +A ++ +E L + T + R + +++ +++I+ + + Sbjct: 127 AARQALIGKSEGL--VNQFKTTDQYL---RDQDK--QVNIAIGASVDQINNYAKQIASLN 179 Query: 541 KQLHALKNINEPKNPNDLIILEDLI 565 Q+ L + +PN+L+ D + Sbjct: 180 DQISRLTGVGAGASPNNLLDQRDQL 204
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 195 bits (496), Expect = 9e-65 Identities = 52/172 (30%), Positives = 84/172 (48%), Gaps = 18/172 (10%) Query: 56 GERPLFADRRAMKPNDLITIIVSEKASANYSSS----KDYKSASGGNSTPPRLTYNGLDE 111 G +PLF DRR D +TI++ E SA+ SSS +D K+ G ++ P L GL Sbjct: 61 GYQPLFEDRRPRNIGDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVPRYL--QGLFG 118 Query: 112 RKKKEAEYLDDKNNYNFTKSSNNTNFKGGGSQKKSEDLEIVLSARIIKVLENGNYFIYGN 171 + + E S F G G S L+ + +VL NGN + G Sbjct: 119 NARADVEA------------SGGNTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGE 166 Query: 172 KEVLVDGEKQILKVSGVIRPYDIERNNTIQSKFLADAKIEYTNLGHLSDSNK 223 K++ ++ + ++ SGV+ P I +NT+ S +ADA+IEY G+++++ Sbjct: 167 KQIAINQGTEFIRFSGVVNPRTISGSNTVPSTQVADARIEYVGNGYINEAQN 218
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 67.8 bits (165), Expect = 5e-14 Identities = 58/263 (22%), Positives = 94/263 (35%), Gaps = 27/263 (10%) Query: 168 QEEKEEVKETPQEEKPKDDETQESETPKD-EEVSKELETQEKLEIPKEEAQEEVKEETQE 226 E++ + +T P + + P + EE+++ E P ++ Sbjct: 985 VEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSE-------TT 1037 Query: 227 EQVKEQEPIKEETQEIKEEKQEETQDSPSVQELEAMQELVKEIQENS---NGQEDKEETQ 283 E V E + +T E E+ ET EA + Q N +G E KE Sbjct: 1038 ETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQT 1097 Query: 284 ENAEIPQDKEIQE---VVTEKTQVQELEIPKEKTQESAEALQ-ETQAQELEKQENAETPQ 339 + E +E V TEKTQ E+PK +Q S + Q ET + E + Sbjct: 1098 TETKETATVEKEEKAKVETEKTQ----EVPKVTSQVSPKQEQSETVQPQAEPARENDPTV 1153 Query: 340 DIEIPQAQEKETPKTQEDHYESIEDIPEPVMAKAMGEELPFLNEAVAKIPNNENDTETLK 399 +I+ PQ+Q T T++ E+ ++ +PV +V + P N T Sbjct: 1154 NIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGN----SVVENPENTTPATTQP 1209 Query: 400 ESNIKIPQEKEESDKTSSPLELR 422 N E K +R Sbjct: 1210 TVN----SESSNKPKNRHRRSVR 1228 Score = 64.3 bits (156), Expect = 5e-13 Identities = 40/192 (20%), Positives = 74/192 (38%), Gaps = 6/192 (3%) Query: 166 DVQEEKEEVKETPQEEKPK-DDETQESETPKDEEVSKELETQEKLEIPKEEAQEEVKEET 224 D E + +E +E K TQ +E + +KE +T E E E +E+ K ET Sbjct: 1057 DATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVET 1116 Query: 225 QEEQVKEQEPIKEETQEIKEEKQEETQDSPSVQELEAMQELVKEIQENSNGQEDKEETQE 284 ++ Q + P K+E+ E Q +KE Q +N D E+ + Sbjct: 1117 EKTQ---EVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAK 1173 Query: 285 NAEIPQDKEIQEVVTEKTQVQELEIPKEKTQESAEALQETQAQELEKQENAETPQDIEIP 344 ++ + E T T +E P+ T + + +++ K + + + +P Sbjct: 1174 ETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVR--SVP 1231 Query: 345 QAQEKETPKTQE 356 E T + + Sbjct: 1232 HNVEPATTSSND 1243 Score = 61.2 bits (148), Expect = 5e-12 Identities = 39/238 (16%), Positives = 77/238 (32%), Gaps = 18/238 (7%) Query: 148 EALAKEEPNNEEQLLPTLDVQEEKEEVKETPQEEKPKDDETQESETPKDEEVSKELETQE 207 E +A+ + P + + + + QE K + Q++ ++E+ + Sbjct: 1015 EEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETT--AQNREVAKEA 1072 Query: 208 KLEIPKEEAQEEVKEETQEEQVKEQEPIKEETQEIKEEKQ----EETQDSPSVQELEAMQ 263 K + EV + E + + KE KEEK E+TQ+ P V + + Sbjct: 1073 KSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPK 1132 Query: 264 ELVKEIQENSNGQEDKEETQENAEIPQDKEIQEVVTEKTQVQELEIPKEKTQESAEALQE 323 + E + + + N + PQ + TE+ P ++T + E Sbjct: 1133 QEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQ--------PAKETSSNVEQPVT 1184 Query: 324 TQAQELEKQENAETPQDIEIPQAQEKETPKTQE----DHYESIEDIPEPVMAKAMGEE 377 E P++ Q ++ H S+ +P V Sbjct: 1185 ESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSN 1242 Score = 52.0 bits (124), Expect = 4e-09 Identities = 48/228 (21%), Positives = 83/228 (36%), Gaps = 35/228 (15%) Query: 112 KKLGSNASELEPRQNLDPTQEILETNWDELENLGDLEALAKEEPNNEEQLLPTLDVQEEK 171 +K +A+E + +AKE +N + T +V + Sbjct: 1052 EKNEQDATETTAQNRE----------------------VAKEAKSNVKANTQTNEVAQSG 1089 Query: 172 EEVKETPQEEKPKDDETQESETPKDEEVSKELETQEKLEIPKEEAQEEVKEETQEEQVKE 231 E KET + ET+E+ T + EE +K ET++ E+PK +Q K+E E + Sbjct: 1090 SETKET------QTTETKETATVEKEEKAKV-ETEKTQEVPKVTSQVSPKQEQSETVQPQ 1142 Query: 232 QEPIKEE--TQEIKEEKQEETQDSPSVQELEAMQELVKEIQENSNGQEDKEETQENAEIP 289 EP +E T IKE + + + + Q + V++ S EN E Sbjct: 1143 AEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENT 1202 Query: 290 QDKEIQEVVTEKTQVQELEIPKEKTQESAEALQETQAQELEKQENAET 337 Q V ++ PK + + S ++ + T Sbjct: 1203 TPATTQPTVNSESS----NKPKNRHRRSVRSVPHNVEPATTSSNDRST 1246 Score = 46.6 bits (110), Expect = 2e-07 Identities = 45/238 (18%), Positives = 83/238 (34%), Gaps = 26/238 (10%) Query: 142 ENLGDLEALAKEEPNNEEQLLPTLDVQEEKEEVKETPQEEKPKDDETQESETPKDEEVSK 201 E +AKE +N + T +V + E KET + ET+E+ T + EE +K Sbjct: 1060 ETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKET------QTTETKETATVEKEEKAK 1113 Query: 202 ELETQEKLEIPKEEAQEEVKEETQEEQVKEQEPIKE-ETQEIKEEKQEETQDSPSVQEL- 259 ET++ E+PK +Q K+E E + EP +E + +E Q +T + ++ Sbjct: 1114 V-ETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPA 1172 Query: 260 -----EAMQELVKEIQENS---------NGQEDKEETQENAEIPQDKEIQEVVTEKTQVQ 305 Q + + N+ N + N+E + + + ++ Sbjct: 1173 KETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPH 1232 Query: 306 ELEIPKEKTQESAEALQETQAQELEKQENAETPQDIEIPQAQEKETPKTQEDHYESIE 363 +E + + + NA Q K H +E Sbjct: 1233 NVEPATTSSNDRSTV---ALCDLTSTNTNAVLSDARAKAQFVALNVGKAVSQHISQLE 1287
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.3 bits (65), Expect = 0.011 Identities = 9/18 (50%), Positives = 11/18 (61%) Query: 8 LILSGPSGAGKSTLTKYL 25 ++L G G GKSTL L Sbjct: 599 VVLEGTGGIGKSTLINTL 616
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 31.4 bits (71), Expect = 0.005 Identities = 37/207 (17%), Positives = 83/207 (40%), Gaps = 1/207 (0%) Query: 23 VLIPLLILSGSLTPHQSFQLGIAVLMGYVFGSFLIQFLSPLMSLESIAKISFGLIALSFL 82 V +P + + P + + A ++ + G+ + LS + ++ + + + Sbjct: 35 VSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSV 94 Query: 83 VCYFDSIPFFWLWIWRFIAGVASSALMILVAPLSLPYVKEHKKALVGGLIFSAVGIGSVF 142 + + F L + RFI G ++A LV + Y+ + + GLI S V +G Sbjct: 95 IGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGV 154 Query: 143 SGFVLPWISSYNIKWAWIFLGGSCLIAFILSLVGLKTRSLRKKSVKKEESAFKIPFHLWL 202 + I+ Y I W+++ L I + L+ L + +R K + + + Sbjct: 155 GPAIGGMIAHY-IHWSYLLLIPMITIITVPFLMKLLKKEVRIKGHFDIKGIILMSVGIVF 213 Query: 203 LLISCALNAIGFLPHTLFWVDYLIRHL 229 ++ +I FL ++ ++H+ Sbjct: 214 FMLFTTSYSISFLIVSVLSFLIFVKHI 240
>BONTOXILYSIN#Bontoxilysin signature. Length = 1196 Score = 34.5 bits (79), Expect = 0.002 Identities = 41/229 (17%), Positives = 73/229 (31%), Gaps = 28/229 (12%) Query: 240 IYSCFKKLSEKEIKPKDEEYISKRIEALDEIFKDS--------NTKFTPKIEVLQNKQSQ 291 I LS K++ K E SK I +I+ +++ I KQS Sbjct: 634 ISDSLLGLSFKDLNNKLYEIYSKNIVYFKKIYFSFLDQWWTEYYSQYFELIC--MAKQSI 691 Query: 292 EKLSEFVKEIIEKIDEKYPINEKFKQQFRTFRLNIGNLKKKIKNSLKYLEKTREDFERK- 350 VK+I++ + R + N + ++F K Sbjct: 692 LAQESLVKQIVQNKFTDLSKASIPPDTLKLIRETTEKTFIDLSNESQISMNRVDNFLNKA 751 Query: 351 ---------KESWIKEIENYCKNQKVLEFNYDVLLDNIKQICEKYIASHVVSDESKDMKS 401 +I +E Y N + + NI EK I + + ++ D K Sbjct: 752 SICVFVEDIYPKFISYMEKYINNINIKTREFIQRCTNINDN-EKSILINSYTFKTIDFKF 810 Query: 402 MMCQFYLEKIDLLFNSEIEQY---RYSDFLESARKFLWEDIKTLDEKSG 447 ++ I FNS++EQ S + + +++ SG Sbjct: 811 ----LDIQSIKNFFNSQVEQVMKEILSPYQLLLFASKGPNSNIIEDISG 855
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 58.5 bits (141), Expect = 3e-12 Identities = 60/263 (22%), Positives = 109/263 (41%), Gaps = 29/263 (11%) Query: 4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATL-AFTYLNESLEKRVRPIAQELNSPYVYE 62 ++GK I G A + I +A++ +QGA + A Y E LEK V + E + Sbjct: 6 IEGKIAFITGAA--QGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFP 63 Query: 63 LDVSKEEHFKVLYNSVKKDLGSLDFIVHSVAF--------APKEALEGSLLETSKSAFNT 114 DV + +++++G +D +V+ E E + S FN Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 115 AMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKYMAHYNVMGLAKAALESAVRYLAV 174 + +S Y + + ++ + +N A V S MA Y +KAA + L + Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPRTS-------MAAY---ASSKAAAVMFTKCLGL 173 Query: 175 DLGKHHIRVNALSAGPIRT-----LASSGIADFRMILKWNE---INAPLRKNVSLEEVGN 226 +L +++IR N +S G T L + ++I E PL+K ++ + Sbjct: 174 ELAEYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIAD 233 Query: 227 AGMYLLSSLSNGVSGEVHFVDAG 249 A ++L+S + ++ VD G Sbjct: 234 AVLFLVSGQAGHITMHNLCVDGG 256
>PF05844#YopD protein Length = 295 Score = 24.6 bits (53), Expect = 0.039 Identities = 12/65 (18%), Positives = 28/65 (43%), Gaps = 1/65 (1%) Query: 10 SVLKANNPHFDKIFEKHNQLDDDIKTAEQQNASDAEVSHMKKQKLKLKDEIHSMIIEYRE 69 L+A F+ + I++ Q + +V + Q ++E+++ I + + Sbjct: 197 VALRAAGRAFESRNGALQVANTVIQSFVQMANASVQVRQGESQASAREEEVNATIGQ-SQ 255 Query: 70 KQKSD 74 KQK + Sbjct: 256 KQKVE 260
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 32.6 bits (74), Expect = 0.002 Identities = 19/100 (19%), Positives = 33/100 (33%), Gaps = 9/100 (9%) Query: 222 WQSFRLG-DLFEKVSARFLGKGDKFKATSKSITDTHNIPL-----VYCKKGNNGIMYWGK 275 + F +G D ++ + + +KA +T P+ +Y G M W Sbjct: 69 YVGFEMGYDWLGRMPYKGSVENGAYKAQGVQLTAKLGYPITDDLDIY---TRLGGMVWRA 125 Query: 276 KGDFETYNNIISIIYNGVIATGLTYAHRDEVGILAESYFI 315 Y + V A G+ YA E+ E + Sbjct: 126 DTKSNVYGKNHDTGVSPVFAGGVEYAITPEIATRLEYQWT 165
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 27.8 bits (62), Expect = 0.029 Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 7/45 (15%) Query: 22 DRFKNALFTKEPGGTR-------MGESLRRIALNENISELARAFL 59 DR++ L PG R M +LR++ ++ +S ++ L Sbjct: 159 DRWETELNEALPGDARDTTTPASMAATLRKLLTSQRLSARSQRQL 203
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 223 bits (571), Expect = 3e-78 Identities = 63/147 (42%), Positives = 93/147 (63%) Query: 4 IGIYPGTFDPVTNGHIDIIHRSSELFEKLIVAVAHSSAKNPMFSLDERLKMMQLATKGFK 63 IYPG+FDP+T GH+DII R LF+++ VAV + K PMFS+ ERL+ + A Sbjct: 2 NAIYPGSFDPITFGHLDIIERGCRLFDQVYVAVLRNPNKQPMFSVQERLEQIAKAIAHLP 61 Query: 64 NVECVAFEGLLANLAKEYHCKVLVRGLRVVSDFEYELQMGYANKSLNHELETLYFMPTLQ 123 N + +FEGL N A++ ++RGLRV+SDFE ELQM NK+L +LET++ + + Sbjct: 62 NAQVDSFEGLTVNYARQRQAGAILRGLRVLSDFELELQMANTNKTLASDLETVFLTTSTE 121 Query: 124 NAFISSSIVRSIIAHKGDASHLVPKEI 150 +F+SSS+V+ + G+ H VP + Sbjct: 122 YSFLSSSLVKEVARFGGNVEHFVPSHV 148
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 134 bits (338), Expect = 6e-41 Identities = 38/202 (18%), Positives = 72/202 (35%), Gaps = 4/202 (1%) Query: 40 QSVFRLERNRLKIAYKLLGLMSFIALILAIVLISLLPLQKTEHHF--VDFLNQDKHYAII 97 + K+A+ + G+ +A + + +L PL+ E + VD + A Sbjct: 22 RDKLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIAAK 81 Query: 98 QRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQN 157 D +I+ +EA+ + + YV RE + ++ V + S+ R+ KT N Sbjct: 82 LHGDATITYDEAVRKYFLATYVRYREGWIAAAREEYFDAVMVMSARPEQDRWSRFYKTDN 141 Query: 158 SIYAQSHLEREVHI-VNIAIYQQDNNPIASVSIAAKLTNENKLVYEKRYKIVLSYLFDTP 216 Q+ L + V I +A V + + + + Y D Sbjct: 142 PQSPQNILANRTDVFVEIKRVSFLGGNVAQVYFTKESVTGSNST-KTDAVATIKYKVDGT 200 Query: 217 DFDYASMPKNPTGFKITRYSIT 238 KNP G+++ Y Sbjct: 201 PSKEVDRFKNPLGYQVESYRAD 222
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 32.4 bits (73), Expect = 0.003 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 196 KEKEEETIIIGDNTNAMKIIKKDIQKGYKALKSSQ--RKWYCLWACSKKSKLSLMPEEIF 253 K +EE+ II D A+ + Q + ALK + R + A K+SK +MP EIF Sbjct: 367 KIREEKQKIILDQAKAL-----ETQYVHNALKRNPVPRNYNYYQAPEKRSK-HIMPSEIF 420 Query: 254 NDKQFTYFKF 263 +D FTYF F Sbjct: 421 DDGTFTYFGF 430
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 87.5 bits (217), Expect = 2e-21 Identities = 46/180 (25%), Positives = 72/180 (40%), Gaps = 19/180 (10%) Query: 7 LITGVTGQDGSYLAEYLLNLGYEVHGLKRRSSSINTSRIDHLYEDLHSDHKRRFFLHYGD 66 L+TG G G ++++ LL G++V G+ + + S E L F H D Sbjct: 4 LVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQP---GFQFHKID 60 Query: 67 MTDSSNLIHLIATTKPTEIYNLAAQSHVKVSFETPEYTANADGIGTLRILEAMRILGLEK 126 + D + L A+ ++ + V+ S E P A+++ G L ILE R ++ Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQ- 119 Query: 127 KTRFYQASTSELYGEVLETPQNENTPF-------NPRSPYAVAKMYAFYITKNYREAYNL 179 AS+S +YG N PF +P S YA K + Y Y L Sbjct: 120 --HLLYASSSSVYGL------NRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGL 171
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 50.2 bits (120), Expect = 3e-09 Identities = 52/346 (15%), Positives = 108/346 (31%), Gaps = 54/346 (15%) Query: 5 ILITGAYGMVGQNTALYFKKNKPDV-----------TLLTPKKSELY-----------LL 42 L+TGA G +G + + + V L + EL L Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDLA 62 Query: 43 DKDNVQAYLKEYKPTGIIHCAGRVGGIVANMNDLSTYMVENLLMGLYLFSSALDLGIKKA 102 D++ + + R + ++ + Y NL L + I+ Sbjct: 63 DREGMTDLFASGHFERVFISPHR-LAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 103 INLASSCAYPKYAPNPLKESDLLNGSLEPTNEGYALAKLSVMKYCEYVSAEKGVFYKTLV 162 + +SS Y P D ++ + YA K + S G+ L Sbjct: 122 LYASSSSVYGLNRKMPFSTDDSVDHPVSL----YAATKKANELMAHTYSHLYGLPATGLR 177 Query: 163 PCNLYGEFDKFEEKIAHMIPGLIARMHTAKLKNEKNFAMWGDGTARREYLNAKDLARFIA 222 +YG + + P + T + K+ ++ G +R++ D+A I Sbjct: 178 FFTVYGPWGR---------PDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAII 228 Query: 223 LAYENIASIPS-----------------VMNVGSGVDYSIEEYYEMVAQVLDYKGVFVKD 265 + I + V N+G+ + +Y + + L + Sbjct: 229 RLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNML 288 Query: 266 LSKPVGMQQKLMDISK-QKALKWELEIPLEQGIKEAYEYYLELLEV 310 +P + + D + + + E ++ G+K +Y + +V Sbjct: 289 PLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDFYKV 334
>FLAGELLIN#Flagellin signature. Length = 507 Score = 284 bits (727), Expect = 5e-92 Identities = 130/519 (25%), Positives = 221/519 (42%), Gaps = 18/519 (3%) Query: 2 SFRINTNIAALTSHAVGVQNNRDLSSSLEKLSSGLRINKAADDSSGMAIADSLRSQSANL 61 + INTN +L + ++ LSS++E+LSSGLRIN A DD++G AIA+ S L Sbjct: 1 AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60 Query: 62 GQAIRNANDAIGMVQTADKAMDEQIKILDTIKTKAVQAAQDGQTLESRRALQSDIQRLLE 121 QA RNAND I + QT + A++E L ++ +VQA + +++Q +IQ+ LE Sbjct: 61 TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120 Query: 122 ELDNIANTTSFNGQQMLSGSFSNKEFQIGAYSNTTVKASIGSTSSDKIGHVRMETSSFSG 181 E+D ++N T FNG ++LS + Q+GA T+ + +G + Sbjct: 121 EIDRVSNQTQFNGVKVLSQDN-QMKIQVGANDGETITIDLQKIDVKSLGLDGFNVN---- 175 Query: 182 AGMLASAAAQNLTEVGLNFKQVNGVNDYKIETVRISTSAGTGIGALSEIINRFSNTLGVR 241 + ++ +FK V G + Y + + +G + + V Sbjct: 176 -----GPKEATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVN 230 Query: 242 ASYNVMATG----GTPVQSGTVRELTINGVEIGTVNDVHKNDADGRLTNAINSVKDRTGV 297 A+ + T T V + T E + K +G T V Sbjct: 231 AANGQLTTDDAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGD-TFDYKGVTFTIDT 289 Query: 298 EASMDIQGRINLHSIDGRAISVHAASASGQVFGGGNFAGISGTQHAVIGRLTLTRTDARD 357 + D G+++ +I+G +++ A + S D + Sbjct: 290 KTGNDGNGKVST-TINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKT 348 Query: 358 IIVSGVNFSHVGFHSAQGVAEYTVNLRAVRGIFDANVASAAGANANGAQAETNSQGIGAG 417 S ++ +G ++ TVN + + AG + + + Sbjct: 349 KNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINE 408 Query: 418 --VTSLKGAMIVMDMADSARTQLDKIRSDMGSVQMELVTTINNISVTQVNVKAAESQIRD 475 + K + DSA +++D +RS +G++Q + I N+ T N+ +A S+I D Sbjct: 409 DAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIED 468 Query: 476 VDFAEESANFSKYNILAQSGSFAMAQANAVQQNVLRLLQ 514 D+A E +N SK IL Q+G+ +AQAN V QNVL LL+ Sbjct: 469 ADYATEVSNMSKAQILQQAGTSVLAQANQVPQNVLSLLR 507
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 29.8 bits (67), Expect = 0.045 Identities = 14/29 (48%), Positives = 17/29 (58%) Query: 225 QEIKNELEKESYIISSIVKKSKKSPTPPP 253 +EIK EL + YI + KSKKS T P Sbjct: 431 EEIKKELIETGYIKFKKIYKSKKSKTSKP 459
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 38.9 bits (90), Expect = 4e-05 Identities = 25/137 (18%), Positives = 59/137 (43%), Gaps = 9/137 (6%) Query: 89 DQSKKEVAETQKEAENARDRANKSGIELEQEKQKT-SNIETNNQIKVEQE-----QQKTE 142 + SK+E +K ++A + ++ ++ K +N +TN + E +T+ Sbjct: 1042 ENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETK 1101 Query: 143 QEKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTEQEKQKTSNIETNNQIKVEQEK 202 + ++EK K +ET +V + + +++++E + + N+ +E Sbjct: 1102 ETATVEKEEKAK---VETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEP 1158 Query: 203 QKTNNTQKDLIKKAEQN 219 Q NT D + A++ Sbjct: 1159 QSQTNTTADTEQPAKET 1175 Score = 36.2 bits (83), Expect = 3e-04 Identities = 26/138 (18%), Positives = 51/138 (36%), Gaps = 2/138 (1%) Query: 89 DQSKKEVAETQKEAENARDRANKSGIELEQEKQKTSNIETNNQIKVEQEQQKTEQEKQKT 148 QS E ETQ K + ++ + +Q+ +QEQ +T Q + + Sbjct: 1086 AQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEP 1145 Query: 149 EQEKQKTSNIE--TNNQIKVEQEQQKTEQEKQKTEQEKQKTSNIETNNQIKVEQEKQKTN 206 +E T NI+ + +Q ++ EQ +++ + T N + E Sbjct: 1146 ARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPA 1205 Query: 207 NTQKDLIKKAEQNCQENH 224 TQ + ++ + H Sbjct: 1206 TTQPTVNSESSNKPKNRH 1223 Score = 31.2 bits (70), Expect = 0.008 Identities = 26/136 (19%), Positives = 48/136 (35%), Gaps = 4/136 (2%) Query: 83 NVCFADDQSKKEVAETQKEAENARDRANKSGIELEQEKQKTSNIETNNQIKVEQEQQKTE 142 N+ ++ + E AR +T+ N + + +K Sbjct: 996 NITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEK-- 1053 Query: 143 QEKQKTEQEKQ-KTSNIETNNQIKVEQEQQKTEQEKQKTEQEKQKTSNIETNNQIKVEQE 201 E+ TE Q + E + +K + + Q +T+ E Q T ET K E+ Sbjct: 1054 NEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETK-ETQTTETKETATVEKEEKA 1112 Query: 202 KQKTNNTQKDLIKKAE 217 K +T TQ+ ++ Sbjct: 1113 KVETEKTQEVPKVTSQ 1128
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 31.2 bits (70), Expect = 0.009 Identities = 32/216 (14%), Positives = 78/216 (36%), Gaps = 15/216 (6%) Query: 130 EQEKQKTEQEQQKTE---QERQKANKSGIELEQERQKTEQERQKT---NKSEIELANSQI 183 ++ K + EQ TE Q R+ A ++ ++ Q E + + E + Sbjct: 1046 QESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETAT 1105 Query: 184 KVEQEKQKANKSGIELEQQKQKTINTQRDLIKEQKDFIKETEQNCQEKHGQLFIKKTRIK 243 ++EK K + + ++ +++ + + + +N + + +T Sbjct: 1106 VEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTT 1165 Query: 244 TGIAGIAIEVEAECKTPKPT-----KTNQIPIQPKH-LPNSKQPRSQRGSKAQEFIAYLQ 297 A E + + P N + P++ P + QP S + + + Sbjct: 1166 ADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRH-R 1224 Query: 298 KELESLPYSQKAIAKQVNFYRPSSIAYLELDPRDFN 333 + + S+P++ + N S++A +L + N Sbjct: 1225 RSVRSVPHNVEPATTSSN--DRSTVALCDLTSTNTN 1258
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 294 bits (754), Expect = 6e-92 Identities = 104/441 (23%), Positives = 184/441 (41%), Gaps = 67/441 (15%) Query: 388 DLEHMNSFKEGEILVTDN-TDPDWEPCMKK-ASAVITNRGGRTCHAAIVAREIGVPAIVG 445 + + + E +++ ++ T D K+ T+ GGRT H+AI++R + +PA+VG Sbjct: 146 ETGSLATIAEETVIIAEDLTPSDTAQLNKQFVKGFATDIGGRTSHSAIMSRSLEIPAVVG 205 Query: 446 VSGATDSLYTGMEITVSCAEGE---------EGYVYAGIYEHEIERVELSNMQETQT--- 493 T+ + G + V EG E ++ E + + + Sbjct: 206 TKEVTEKIQHGDMVIVDGIEGIVIVNPTEEEVKAYEEKRAAFEKQKQEWAKLVGEPSTTK 265 Query: 494 -----KIYINIGNPEKAFSFSQLPNHGVGLARMEMIILNQIKAHPLALVDLHHKKSVKEK 548 ++ NIG P+ G+GL R E + +++ + P Sbjct: 266 DGAHVELAANIGTPKDVDGVLANGGEGIGLYRTEFLYMDRDQ-LPTE------------- 311 Query: 549 NEIENLMAGYANPKDFFVKKIAEGIGMISAAFYPKPVIVRTSDFKSNEYMRMLGGSSYEP 608 E Y K++ + KPV++RT D ++ + L P Sbjct: 312 ---EEQFEAY--------KEVVQ-------RMDGKPVVIRTLDIGGDKELSYL----QLP 349 Query: 609 NEENPMLGYRGASRYYSESYNEAFSWECEALALVREEMGLTNMKVMIPFLRTIEEGKKVL 668 E NP LG+R + F + AL N+KVM P + T+EE ++ Sbjct: 350 KELNPFLGFRAIRLCLE--KQDIFRTQLRALL---RASTYGNLKVMFPMIATLEELRQAK 404 Query: 669 EILRKNNLESGKNG------LEIYIMCELPVNVILADDFLSLFDGFSIGSNDLTQLTLGV 722 I+++ + G +E+ IM E+P + A+ F D FSIG+NDL Q T+ Sbjct: 405 AIMQEEKDKLLSEGVDVSDSIEVGIMVEIPSTAVAANLFAKEVDFFSIGTNDLIQYTMAA 464 Query: 723 DRDSELVSHVFDERNEAMLKMFKKAIEACKRHNKYCGICGQAPSDYPEVTEFLVKEGITS 782 DR +E VS+++ + A+L++ I+A K+ G+CG+ D L+ G+ Sbjct: 465 DRMNERVSYLYQPYHPAILRLVDMVIKAAHSEGKWVGMCGEMAGD-EVAIPLLLGLGLDE 523 Query: 783 ISLNPDSVIPTWNAVAKLEKE 803 S++ S++P + + KL KE Sbjct: 524 FSMSATSILPARSQLLKLSKE 544
>LCRVANTIGEN#Low calcium response V antigen signature. Length = 326 Score = 30.4 bits (68), Expect = 0.001 Identities = 15/33 (45%), Positives = 20/33 (60%) Query: 16 KRKRLLTELAELEAEIKVSSERRSSFNISLSPS 48 R +L ELAEL AE+K+ S ++ N LS S Sbjct: 149 ARSKLREELAELTAELKIYSVIQAEINKHLSSS 181
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 283 bits (726), Expect = 2e-79 Identities = 108/397 (27%), Positives = 181/397 (45%), Gaps = 14/397 (3%) Query: 2796 AGNNSILWLNELFAAKGGNPLFAPYYLQDNPTEHIVTLMKDITSALGMLSKPNLKNNSTD 2855 +G L L + +A + I + T+ L ++ K + Sbjct: 904 SGAQGRDLLQTLLI-DSHDAGYARTMIDATSANEITKQLNTATTTLNNIASLEHKTSGLQ 962 Query: 2856 ALQLSTYTQQMSRLAKLSNFASFDSTDFSERLSSLKNQRFADAIPNAMDVILKYSQRDKL 2915 L LS SRL LS + F++RL +LK+QRFA + +A +V+ +++ + + Sbjct: 963 TLSLSNAMILNSRLVNLSRRHTNHIDSFAKRLQALKDQRFAS-LESAAEVLYQFAPKYEK 1021 Query: 2916 KNNLWATGVGGVSFVENGTGTLYGVNVGYDRFIKG---VIVGGYAAYGYSGFYER--ITN 2970 N+WA +GG S G +LYG + G D ++ G IVGG+ +YGYS F + N Sbjct: 1022 PTNVWANAIGGTSLNSGGNASLYGTSAGVDAYLNGEVEAIVGGFGSYGYSSFSNQANSLN 1081 Query: 2971 SKSDNVDVGLYARAFIKKSELTFSVNETWGANKTQINSNDTLLSMINQSYKYNTWTTNAK 3030 S ++N + G+Y+R F + E F G++++ +N LL +NQSY Y ++ + Sbjct: 1082 SGANNTNFGVYSRIFANQHEFDFEAQGALGSDQSSLNFKSALLRDLNQSYNYLAYSAATR 1141 Query: 3031 VNYGYDFMFKNKSIILKPQIGLRYYYIGMTGLEGVMNNALYNQFKANADPSKKSVLTIDL 3090 +YGYDF F +++LKP +G+ Y ++G T + + S + + Sbjct: 1142 ASYGYDFAFFRNALVLKPSVGVSYNHLGSTNFKS----NSNQKVALKNGASSQHLFNASA 1197 Query: 3091 ALENRHYFNTNSYFYAIGGFGRDLLVNSMGDKLVRFIGNNTLSYRKGELYNTFASITTGG 3150 +E R+Y+ SYFY G ++ N V + R NT A + GG Sbjct: 1198 NVEARYYYGDTSYFYMNAGVLQEFA-NFGSSNAVSLNTFKVNATRNP--LNTHARVMMGG 1254 Query: 3151 EVRLFKSFYANAGVGARFGLDYKMINITGNIGMRLAF 3187 E++L K + N G L + + N+GMR +F Sbjct: 1255 ELKLAKEVFLNLGFVYLHNLISNIGHFASNLGMRYSF 1291 Score = 32.7 bits (74), Expect = 0.034 Identities = 15/110 (13%), Positives = 31/110 (28%), Gaps = 13/110 (11%) Query: 669 SYHFKNTNFLAGNFKFQGKTTIEKSVLSDASYTFDGANNTFNEDKFNGGSFNFNHAEQTN 728 SY NT+ + G F L+ + +K + G+ + Q+ Sbjct: 272 SYSTINTSKVTGEVNFNH--------LTVGDHNAA-QAGIIASNKTHIGTLDLW---QSA 319 Query: 729 AFNNNSFNGGSFNFNAKQVDFNGNVFNGGVFNFNNTPKASFTDDAFNVNN 778 N + G + + N + + + + N N Sbjct: 320 GLNIIAPPEGGYKDKPND-KPSNTTQNNAKNDKQESSQNNSNTQVINPPN 368
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 899 bits (2326), Expect = 0.0 Identities = 285/1038 (27%), Positives = 517/1038 (49%), Gaps = 40/1038 (3%) Query: 1 MYKTAINRPITTLMFALAIVFFGTMGFKKLSVALFPKIDLPTVVVTTTYPGASAEIIESK 60 M I RPI + A+ ++ G + +L VA +P I P V V+ YPGA A+ ++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VTDKIEEAVMGIDGIKKVTSTSSKNVSIVV-IEFELEKPNEEALNDVVNKISSVR-FDDS 118 VT IE+ + GID + ++STS S+ + + F+ + A V NK+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 119 NIKKPSINKFDTDSQAIISLFVSSSSVPAT--TLNDYAKNTIKPMLQKINGVGGVQLNGF 176 +++ I+ + S ++ S + T ++DY + +K L ++NGVG VQL G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG- 179 Query: 177 RERQIRIYADPTLMNKYNLTYADLFSTLKAENVEIDGGRIVNS------QRELSILINAN 230 + +RI+ D L+NKY LT D+ + LK +N +I G++ + Q SI+ Sbjct: 180 AQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 231 SYSVADVEKIQV-----GNHVRLGDIAKIEIGLEEDNTFASFKDKPGVILEIQKIAGANE 285 + + K+ + G+ VRL D+A++E+G E N A KP L I+ GAN Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 286 IEIVDRVYEALKHIQAISP-SYEIRPFLDTTSYIRTSIEDVKFDLVLGAILAVLVVFAFL 344 ++ + L +Q P ++ DTT +++ SI +V L +L LV++ FL Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 345 RNGTITLVSAISIPISIMGTFALIQWMGFSLNMLTMVALTLAIGIIIDDAIVVIENIHK- 403 +N TL+ I++P+ ++GTFA++ G+S+N LTM + LAIG+++DDAIVV+EN+ + Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 404 KLEMGMSKRKASYEGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQSFGITVALAIA 463 +E + ++A+ + + +I ALV I+ +L +VF+P+ G G ++ F IT+ A+A Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 464 LSYVVVVTIIPMVSSVVVNPRHS-------RFYVWSEPFFKALESRYTRLLQWVLNHKLI 516 LS +V + + P + + ++ P + F+ W F + YT + +L Sbjct: 480 LSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539 Query: 517 ISIAVVLVFVGSLFVASKLGMEFMLKEDRGRFLVWLKAKPGVSIDY----MTQKSKIFQK 572 + L+ G + + +L F+ +ED+G FL ++ G + + + Q + + K Sbjct: 540 YLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLK 599 Query: 573 AIEKHAEVEFTTLQVGY-GTTQNPFKAKIFVQLKPLKERKKEGELGQFELMSALRKELKS 631 + + E FT + G QN FV LKP +ER + ++ + EL Sbjct: 600 NEKANVESVFTVNGFSFSGQAQNA--GMAFVSLKPWEERNGDENS-AEAVIHRAKMELGK 656 Query: 632 MPEAKGLDTINLSEVSLLGGGGDSSPFQTFVFSHSQEAVDKSVANLKKFLLESPELKGKI 691 + + + N+ + L G ++ F + + D + L + + + Sbjct: 657 IRDGFVI-PFNMPAIVEL---GTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASL 712 Query: 692 EGYHTSTSESQPQLQLKILRQNANKYGVSAQTIGAVVSSAFSGTSQASVFKEDGKEYDMI 751 + E Q +L++ ++ A GVS I +S+A G + + F + G+ + Sbjct: 713 VSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGG-TYVNDFIDRGRVKKLY 771 Query: 752 IRVPDSKRVSVEDIKRLQVRNKYDKLMFLDALVEITETKSPSSISRYNRQRSVTVLAQPK 811 ++ R+ ED+ +L VR+ +++ A + RYN S+ + + Sbjct: 772 VQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAA 831 Query: 812 AGISLGEILTQVSKNTKEWLVEGANYRFTGEADNAKETNGEFLIALATAFVLIYMILAAL 871 G S G+ + + +N L G Y +TG + + + + +A +FV++++ LAAL Sbjct: 832 PGTSSGDAMALM-ENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAAL 890 Query: 872 YESILEPFIIMVTMPLSFSGAFFALGLVHQPLSMFSMIGLILLIGMVGKNATLLIDVANE 931 YES P +M+ +PL G A L +Q ++ M+GL+ IG+ KNA L+++ A + Sbjct: 891 YESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKD 950 Query: 932 -ERKKGLNIQEAILFAGKTRLRPILMTTIAMVCGMLPLALASGDGAAMKSPIGIAMSGGL 990 K+G + EA L A + RLRPILMT++A + G+LPLA+++G G+ ++ +GI + GG+ Sbjct: 951 LMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGM 1010 Query: 991 MISMVLSLLIVPVFYRLL 1008 + + +L++ VPVF+ ++ Sbjct: 1011 VSATLLAIFFVPVFFVVI 1028
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 50.2 bits (120), Expect = 2e-09 Identities = 22/69 (31%), Positives = 34/69 (49%) Query: 40 STGIVDSIKVTEGSVVKKGDVLLLLYNQDKQAQSDSTEQQLIFAKKQYQRYSKIGGAVDK 99 IV I V EG V+KGDVLL L +A + T+ L+ A+ + RY + +++ Sbjct: 103 ENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIEL 162 Query: 100 NTLEGYEFT 108 N L + Sbjct: 163 NKLPELKLP 171 Score = 31.0 bits (70), Expect = 0.005 Identities = 23/152 (15%), Positives = 50/152 (32%), Gaps = 25/152 (16%) Query: 70 QAQSDSTEQQLIFAKKQYQR--YSKIGGAVDKNTLEGYEFTYRRLESDYAYSIAVLNKTI 127 +++ S +++ + ++ K+ D L L + A + ++ Sbjct: 279 ESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGL---------LTLELAKNEERQQASV 329 Query: 128 LRAPFDGVIASKNIQVGEGVSANNTVLLRLVSHARKLVIE--FDSKYINAVKVG------ 179 +RAP + + GV L+ +V L + +K I + VG Sbjct: 330 IRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIK 389 Query: 180 -DTYTYSIDGDSNQHEAKITKIYP--TVDENT 208 + + Y+ G K+ I D+ Sbjct: 390 VEAFPYTRYGYL---VGKVKNINLDAIEDQRL 418
>OMS28PORIN#OMS28 porin signature. Length = 257 Score = 27.8 bits (61), Expect = 0.028 Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 11/112 (9%) Query: 25 NQTTELHHKNPYELLVATILSAQCTDARVNQITPKLFEKYPSVNDLAL-----ASLEEVK 79 N+ E+ K E A ++ + T QI + K P+ +L L A +E+VK Sbjct: 132 NKVVEMSKKAVQETQKAVSVAGEATFLIEKQI---MLNKSPNNKELELTKEEFAKVEQVK 188 Query: 80 EIIKSVSYFNNKSKHLISMAQKVIRDFKGVIPSTQKELMSLDGVGQKTANVV 131 E + + +++ + AQKV+ G+ PS + ++++ V + +NVV Sbjct: 189 ETLMASERALDET---VQEAQKVLNMVNGLNPSNKDQVLAKKDVAKAISNVV 237
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 100 bits (250), Expect = 1e-30 Identities = 25/77 (32%), Positives = 47/77 (61%) Query: 34 LICDYKNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKG 93 + D ++D+ + + ELG T++ + ++LR +GSV+ L AGE +D +NG +I +G Sbjct: 50 AMQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQG 109 Query: 94 EVMVFERNLAIRLNEIL 110 EV+V +R+ +I+ Sbjct: 110 EVVVVADKYGVRITDII 126
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 50.8 bits (121), Expect = 2e-09 Identities = 25/57 (43%), Positives = 29/57 (50%) Query: 83 APKPTLAGPQKPPTPPIPPTPPTPPKPIEKPKPEPKPKPKPEPKKPNHKHKALKKVE 139 P P +P PIP P P IEKPKP+PKPKPKP K + +K VE Sbjct: 62 QPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVE 118 Score = 44.6 bits (105), Expect = 2e-07 Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 8/70 (11%) Query: 84 PKPTLAGPQKPPTPPIPPTPPTPPKPIEKPKPEPKPKPKPEPKKPNHKHKALKKVEKVEE 143 P + P +P P P P P P E P KPKPKP+PK K V+KV+E Sbjct: 57 PPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKP--------KPVKKVQE 108 Query: 144 KKVVEEKKEE 153 + + K E Sbjct: 109 QPKRDVKPVE 118 Score = 38.8 bits (90), Expect = 1e-05 Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 1/72 (1%) Query: 87 TLAGPQKPPTPPIPPTPPTPPKPIEKPKPEPKPKPKPEPKKPNHKHKALKKVEKVEEKKV 146 T+ P P PP P E P+PEP P+P E K K K + KKV Sbjct: 48 TMVTPADLEPPQAVQPPPEPVVEPE-PEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKV 106 Query: 147 VEEKKEEKKIVE 158 E+ K + K VE Sbjct: 107 QEQPKRDVKPVE 118 Score = 38.0 bits (88), Expect = 3e-05 Identities = 16/54 (29%), Positives = 21/54 (38%) Query: 74 QDPSKNTPGAPKPTLAGPQKPPTPPIPPTPPTPPKPIEKPKPEPKPKPKPEPKK 127 Q +P P P P PKP KPKP+P K + +PK+ Sbjct: 59 QAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKR 112 Score = 38.0 bits (88), Expect = 3e-05 Identities = 42/218 (19%), Positives = 76/218 (34%), Gaps = 40/218 (18%) Query: 98 PIPPTPPTPPKPIEKPKPEPKPKPKPEPKKPNHKHKALKKVEKVEEKKVVEEKKEEKKIV 157 + P P P +PEP+P+P PEP K VV EK + K Sbjct: 54 DLEPPQAVQPPPEPVVEPEPEPEPIPEPPKE---------------APVVIEKPKPKPKP 98 Query: 158 EQKVEQKVEQKKIEEKKPVKKEFDPNQLSFLPKEVAPPRKENNKGLDNQTRRDIDELYGE 217 + K +KV+++ + KPV E P N T + Sbjct: 99 KPKPVKKVQEQPKRDVKPV--------------ESRPASPFENTAPARLTSSTATAATSK 144 Query: 218 EFGDLGTAEKDFIRNNLRDIGRITQKYLEYPQVAAYLGQDGTNAVEFYLHPNGDITDLKI 277 + + + RN + YP A L +G V+F + P+G + +++I Sbjct: 145 PVTSVASGPRALSRNQPQ-----------YPARAQALRIEGQVKVKFDVTPDGRVDNVQI 193 Query: 278 IIGSEYKMLDDNTLKTIQIAYKDYPRPKTKTLIRIRVR 315 + M + ++ + +P + ++ I + Sbjct: 194 LSAKPANMFEREVKNAMRRWRYEPGKPGSGIVVNILFK 231 Score = 30.7 bits (69), Expect = 0.005 Identities = 12/52 (23%), Positives = 16/52 (30%) Query: 75 DPSKNTPGAPKPTLAGPQKPPTPPIPPTPPTPPKPIEKPKPEPKPKPKPEPK 126 +P P + P P P P K E+PK + KP Sbjct: 72 EPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPAS 123
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 27.4 bits (61), Expect = 0.030 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 4/64 (6%) Query: 88 LQSYSVMLFFNLLLLTDILGFLPFSIYHHFMASLIFSTLFCGSLFLNSPLLGVIALVALS 147 L Y F L+L+ +LPFS S + + +L PLL V AL+A++ Sbjct: 45 LSDYYFEHFSKLMLIPAEQSYLPFSQ----ALSYVVDNVLLEFFYLCFPLLTVAALMAIA 100 Query: 148 SSLL 151 S ++ Sbjct: 101 SHVV 104
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 32.1 bits (73), Expect = 0.006 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 7/50 (14%) Query: 30 VAIVGESGSGKSSIANIIMRLNPR----FKPHNGEVLFETTNLLKESEAF 75 + I GESG+GK +A + R F N + L ESE F Sbjct: 163 LMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRD---LIESELF 209
>SECA#SecA protein signature. Length = 901 Score = 29.8 bits (67), Expect = 0.029 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%) Query: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRG 320 +V T + ++++ + L K L+ + A+I+A A V +AT++A RG Sbjct: 453 LVGTISIEKSELVSNELTKAGIKHNVLNAKFHANE--AAIVAQAGYPAAVTIATNMAGRG 510 Query: 321 LDI 323 DI Sbjct: 511 TDI 513
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 366 bits (940), Expect = e-128 Identities = 118/345 (34%), Positives = 190/345 (55%), Gaps = 26/345 (7%) Query: 19 AEKIGDIASVVGVRDNQLIGYGLVIGLNGTGDK-SGSKFTMQSISNMLESVNVKISADDI 77 +I DIAS+ RDNQLIGYGLV+GL GTGD S FT QS+ ML+++ + Sbjct: 28 TSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDSLRSSPFTEQSMRAMLQNLGITTQGGQS 87 Query: 78 KSKNVAAVMITASLPPFARQGDKIDIHISSIGDAKSIQGGTLVMTPLNAVDGNIYALAQG 137 +KN+AAVM+TA+LPPFA G ++D+ +SS+GDA S++GG L+MT L+ DG IYA+AQG Sbjct: 88 NAKNIAAVMVTANLPPFASPGSRVDVTVSSLGDATSLRGGNLIMTSLSGADGQIYAVAQG 147 Query: 138 AITSGNF-----------NNLLSANIINGATIEREVSYDLFHKNAMTLSLKNPNFKNAIQ 186 A+ F SA + NGA IERE+ + L L+NP+F A++ Sbjct: 148 ALIVNGFSAQGDAATLTQGVTTSARVPNGAIIERELPSKFKDSVNLVLQLRNPDFSTAVR 207 Query: 187 VQNTLNKV----FGNKVAIALDPKTIQITRPERLSMVEFLALVQEIPINYSAKNKIIVDE 242 V + +N +G+ +A D + I + +P + +A ++ + + K++++E Sbjct: 208 VADVVNAFARARYGDPIAEPRDSQEIAVQKPRVADLTRLMAEIENLTVETDTPAKVVINE 267 Query: 243 KSGTIVSGVDIIVHPIVVTSQDITLKITKEP--------LNDSKNTQDLDNNMSLDTAHN 294 ++GTIV G D+ + + V+ +T+++T+ P Q + M++ Sbjct: 268 RTGTIVIGADVRISRVAVSYGTLTVQVTESPQVIQPAPFSRGQTAVQPQTDIMAMQEGSK 327 Query: 295 TLSSNGKSITIAGVVKALQKIGVSAKGMVSILQALKKSGAISAEM 339 G + +V L IG+ A G+++ILQ +K +GA+ AE+ Sbjct: 328 VAIVEGPDLR--TLVAGLNSIGLKADGIIAILQGIKSAGALQAEL 370
>PF06580#Sensor histidine kinase Length = 349 Score = 29.8 bits (67), Expect = 0.015 Identities = 10/71 (14%), Positives = 25/71 (35%), Gaps = 13/71 (18%) Query: 281 IVLQNFLYNAIDAIEALEESEQ-GQVKIEAFIQNEFIVFTIIDNGKEVENKSALFEPFET 339 +++Q + N I + + Q G++ ++ N + + + G + Sbjct: 258 MLVQTLVENGI--KHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTK------- 308 Query: 340 TKLKGNGLGLA 350 + G GL Sbjct: 309 ---ESTGTGLQ 316
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 149 bits (377), Expect = 3e-49 Identities = 39/140 (27%), Positives = 74/140 (52%), Gaps = 1/140 (0%) Query: 5 EILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEEFADMFDDLAERIAQLGHH 64 L ++ +L+ K+H FHW VKG FF +H+ EE+Y+ A+ D +AER+ +G Sbjct: 15 NSLNTQLSNWFLLYSKLHRFHWYVKGPHFFTLHEKFEELYDHAAETVDTIAERLLAIGGQ 74 Query: 65 PLVTLSEALKLTRVKEETKTSFHSKDIFKEILGDYKHLEKEFKELSNTAEKEGDKVTVTY 124 P+ T+ E + + + + + ++ + ++ DYK + E K + AE+ D T Sbjct: 75 PVATVKEYTEHASITDGGNET-SASEMVQALVNDYKQISSESKFVIGLAEENQDNATADL 133 Query: 125 ADDQLAKLQKSIWMLEAHLA 144 + +++K +WML ++L Sbjct: 134 FVGLIEEVEKQVWMLSSYLG 153
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 428 bits (1102), Expect = e-147 Identities = 165/581 (28%), Positives = 278/581 (47%), Gaps = 81/581 (13%) Query: 10 RLILAIALSFLFITLYSYFFQKPNKTTTETTKQETTNNHTTTSPNAPNAQHFSVTQTIPQ 69 R +L IAL F+ ++ Q + + + T TTT+ + Q Q Sbjct: 5 RNLLVIALLFVSFMIW----QAWEQDKNPQPQAQQTTQTTTTAAGSAADQG---VPASGQ 57 Query: 70 ENLLSTISFEHARIEIDFLG-RIKQVYLKDKKYLTPKQKGFLEHVG--HLFSSKEN---- 122 L+ ++ + + I+ G ++Q L P L L + Sbjct: 58 GKLI-SVKTDVLDLTINTRGGDVEQALL-------PAYPKELNSTQPFQLLETSPQFIYQ 109 Query: 123 AQPPL--KELPLLAADKLKPLEVRFLDPTLNNKAFNTPYSASKTTLGPNEQLV--LTQDL 178 AQ L ++ P A+ +PL +N A G NE V D Sbjct: 110 AQSGLTGRDGPDNPANGPRPL-------------YNVEKDAYVLAEGQNELQVPMTYTDA 156 Query: 179 GALTIIKTLTFYDDLHYDLKIAFKSPNN------------------LIPSYVITNGYRPV 220 T KT Y + + + N L P + + Sbjct: 157 AGNTFTKTFVLKRG-DYAVNVNYNVQNAGEKPLEISSFGQLKQSITLPPHLDTGSSNFAL 215 Query: 221 ADLDSYTFSGVLLENNDKKIEKIE---DKDAKEIKRFSNTLFLSSVDRYFTTLLFTKDPQ 277 +TF G D+K EK + D + + S +++ + +YF T + Sbjct: 216 -----HTFRGAAYSTPDEKYEKYKFDTIADNENLNISSKGGWVAMLQQYFATAWIPHN-D 269 Query: 278 GFEALIDSEIGTKNPLGFISLKNEA-----------NLHGYIGPKDYRSLKAISPMLTDV 326 G + +G N + I K++ N ++GP+ + A++P L Sbjct: 270 GTNNFYTANLG--NGIAAIGYKSQPVLVQPGQTGAMNSTLWVGPEIQDKMAAVAPHLDLT 327 Query: 327 IEYGLITFFAKGVFVLLDYLYQFVGNWGWAIILLTIIVRLILYPLSYKGMVSMQKLKELA 386 ++YG + F ++ +F LL +++ FVGNWG++II++T IVR I+YPL+ SM K++ L Sbjct: 328 VDYGWLWFISQPLFKLLKWIHSFVGNWGFSIIIITFIVRGIMYPLTKAQYTSMAKMRMLQ 387 Query: 387 PKMKELQEKYKGEPQKLQAHMMQLYKKHGANPLGGCLPLILQIPVFFAIYRVLYNAVELK 446 PK++ ++E+ + Q++ MM LYK NPLGGC PL++Q+P+F A+Y +L +VEL+ Sbjct: 388 PKIQAMRERLGDDKQRISQEMMALYKAEKVNPLGGCFPLLIQMPIFLALYYMLMGSVELR 447 Query: 447 SSEWILWIHDLSIMDPYFILPLLMGASMYWHQSVTPNTMTDPMQAKIFKLLPLLFTIFLI 506 + + LWIHDLS DPY+ILP+LMG +M++ Q ++P T+TDPMQ KI +P++FT+F + Sbjct: 448 QAPFALWIHDLSAQDPYYILPILMGVTMFFIQKMSPTTVTDPMQQKIMTFMPVIFTVFFL 507 Query: 507 TFPAGLVLYWTTNNILSVLQQLIINKVLENKKRMHAQNKKE 547 FP+GLVLY+ +N+++++QQ +I + LE K+ +H++ KK+ Sbjct: 508 WFPSGLVLYYIVSNLVTIIQQQLIYRGLE-KRGLHSREKKK 547
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 31.4 bits (71), Expect = 0.008 Identities = 32/134 (23%), Positives = 53/134 (39%), Gaps = 25/134 (18%) Query: 216 LSIVGKPNAGKSSLLNAMLLEERA---LVSDIKGTTR-DTIEE-------------VIEL 258 + ++ +AGK++L ++L A L S KGTTR D + Sbjct: 6 IGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW 65 Query: 259 KGHKVRLIDTAGIRESADKIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFNLIDTLN 318 + KV +IDT G + ++ R SL L D + + ++ + L L Sbjct: 66 ENTKVNIIDTPGHMDFLAEVYR-----SLSVL---DGAILLISAKDGVQAQTRILFHALR 117 Query: 319 RAKKPCIVVLNKND 332 + P I +NK D Sbjct: 118 KMGIPTIFFINKID 131
>BINARYTOXINB#Binary toxin B family signature. Length = 764 Score = 32.3 bits (73), Expect = 0.003 Identities = 15/60 (25%), Positives = 22/60 (36%) Query: 155 SKNMGDLLAKAMPIERILKAYSVPVGSLENYEKIYYQNAFKPKVQITFDNNSDAEIKNAL 214 + N D L P + +A + G E + YQ + FD + IKN L Sbjct: 536 AVNPSDPLETTKPDMTLKEALKIAFGFNEPNGNLQYQGKDITEFDFNFDQQTSQNIKNQL 595
>LIPOLPP20#LPP20 lipoprotein precursor signature. Length = 175 Score = 293 bits (752), Expect = e-105 Identities = 174/175 (99%), Positives = 175/175 (100%) Query: 1 MKNQVKKILGMSVIAAMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK 60 MKNQVKKILGMSV+AAMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK Sbjct: 1 MKNQVKKILGMSVVAAMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK 60 Query: 61 YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRS 120 YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRS Sbjct: 61 YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRS 120 Query: 121 ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK 175 ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK Sbjct: 121 ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK 175
>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE signature. Length = 103 Score = 76.6 bits (188), Expect = 7e-22 Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 1/77 (1%) Query: 34 EQKGGEFSKLLKQSINELNNTQEQSDKALADMATGQIK-DLHQAAIAIGKAETSMKLMLE 92 Q F+ L +++ +++TQ + G+ L+ + KA SM++ ++ Sbjct: 27 PQPTISFAGQLHAALDRISDTQTAARTQAEKFTLGEPGVALNDVMTDMQKASVSMQMGIQ 86 Query: 93 VRNKAISAYKELLRTQI 109 VRNK ++AY+E++ Q+ Sbjct: 87 VRNKLVAAYQEVMSMQV 103
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 26.8 bits (59), Expect = 0.040 Identities = 9/38 (23%), Positives = 14/38 (36%) Query: 121 NVNAVVEMADLVEATRAYQANVAAFQSTKNMAQNAIGM 158 VN E +L + Y AN Q+ + I + Sbjct: 508 GVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 37.2 bits (86), Expect = 6e-05 Identities = 29/184 (15%), Positives = 80/184 (43%), Gaps = 12/184 (6%) Query: 108 NVELLKKLSPDLVVTFVG-NPKAVEHAKKFGISFLSFQETT--IAEAMQAMQ--AQATVL 162 N+ELL ++ P +V G P A+ +F + +A A +++ A L Sbjct: 88 NLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNL 147 Query: 163 EIDASKKFAKMQETLDFIKERLKGVKKKKGVELFHKAN----KISGHQAISSDILEKGGI 218 + A A+ ++ + +K R + + + L + + G ++ +IL++ GI Sbjct: 148 QSAAETHLAQYEDFIRSMKPRFVK-RGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGI 206 Query: 219 DN-FGLKYVKFGRADISVEKIVK-ENPEIIFIWWVSPLTPEDILNNPKFSTIKAIKNKQV 276 N + + +G +S++++ ++ +++ + + ++ P + + ++ + Sbjct: 207 PNAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGRF 266 Query: 277 YKLP 280 ++P Sbjct: 267 QRVP 270
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 34.2 bits (78), Expect = 6e-04 Identities = 30/184 (16%), Positives = 76/184 (41%), Gaps = 12/184 (6%) Query: 106 NVELLKKLSPDLVVTFVGNPKAVEHAKKF--GILFLSFQEKTIAEVMEDID---AQAKAL 160 N+ELL ++ P +V G + E + G F K + A L Sbjct: 88 NLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNL 147 Query: 161 EIDASKKLAKMQETLDFIKERLKGVKKKKGVELFHKAN----KISGHQALDSDILEKGGI 216 + A LA+ ++ + +K R + + + L + + G +L +IL++ GI Sbjct: 148 QSAAETHLAQYEDFIRSMKPRFVK-RGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGI 206 Query: 217 DN-FGLKYVKFGRADISVEKIVK-ENPEIIFIWWISPLSPEDVLNNPKFATIKAIKNKQV 274 N + + +G +S++++ ++ +++ + + ++ P + + ++ + Sbjct: 207 PNAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGRF 266 Query: 275 YKLP 278 ++P Sbjct: 267 QRVP 270
>TYPE3IMPPROT#Type III secretion system inner membrane P protein family signature. Length = 224 Score = 29.4 bits (66), Expect = 0.031 Identities = 9/23 (39%), Positives = 12/23 (52%) Query: 4 LRYKLLLFVFIGFWGLLVLNLFI 26 KL+LFV + W LL L + Sbjct: 195 TPIKLVLFVALDGWTLLSKGLIL 217