>AUTOINDCRSYN#Autoinducer synthesis protein signature. Length = 216 Score = 28.3 bits (63), Expect = 0.023 Identities = 16/72 (22%), Positives = 25/72 (34%), Gaps = 1/72 (1%) Query: 14 VGKTTTCVNLAASMAATRRKVLVIDLDPQGNATMGSGVDKYDVERTAYELLIED-APIGE 72 V T + + R++ L+ T G D+YD T Y I+D I Sbjct: 7 VNHTLLSETKSGELFTLRKETFKDRLNWAVQCTDGMEFDQYDNNNTTYLFGIKDNTVICS 66 Query: 73 VIIPETSGGYHL 84 + ET + Sbjct: 67 LRFIETKYPNMI 78
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 74.3 bits (182), Expect = 1e-18 Identities = 27/173 (15%), Positives = 60/173 (34%), Gaps = 17/173 (9%) Query: 1 MKTRDRIIHSATELFNDQGERNITTNHIAAHLGISPGNLYYHFRNKEDIIHSIFDQYARH 60 +TR I+ A LF+ QG + + IA G++ G +Y+HF++K D+ I++ + Sbjct: 10 QETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESN 69 Query: 61 LSESFTPARSDEIKLENLMGYLDAIFYLMWQFRFFYANLPDILSRD----------EPLQ 110 + E + + L I + + ++ +Q Sbjct: 70 IGE--LELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQ 127 Query: 111 QKYLKAQEQLRAAVVALLRSLREGGIINVSDEDLPDLGQTI----KMVVTCWI 159 Q + + L+ E ++ +D + ++ W+ Sbjct: 128 QAQRNLCLESYDRIEQTLKHCIEAKML-PADLMTRRAAIIMRGYISGLMENWL 179
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 103 bits (258), Expect = 2e-27 Identities = 77/345 (22%), Positives = 127/345 (36%), Gaps = 51/345 (14%) Query: 2 IVVTGGAGFIGSNLVKQLNAQGRTDVVVIDDLTDGTKFVNLVDLTIADYMDKDEFQARIV 61 +VTG AGFIG ++ K+L G VV ID+L D V+L + Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGH-QVVGIDNLNDY-YDVSLKQARLELLAQPGFQ---FH 57 Query: 62 SGD-EFEEW------DGGIEVIFHEGACSAT--TEWNGKFIMEVNYEYSKDLFHYCIERE 112 D E G E +F A + N + N ++ C + Sbjct: 58 KIDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNK 117 Query: 113 IP-FIYASSAATYGG-RNDNFIEDPKFEQPLNVYGYSKQLFDQYVRRWMPEINSQVVGLK 170 I +YASS++ YG R F D + P+++Y +K+ + + GL+ Sbjct: 118 IQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLR 177 Query: 171 YFNVYGPREQHKGSMASVAFHLNTQVKKGENPKLFEGCDGFPNGGQMRDFIYVDDVCKVN 230 +F VYGP + MA F + +G++ ++ G RDF Y+DD+ + Sbjct: 178 FFTVYGPWG--RPDMA--LFKFTKAMLEGKSIDVYN------YGKMKRDFTYIDDIAEAI 227 Query: 231 LWFWLNPQHSG------------------IFNCGTGRAEPFQNVAEAVIKHHQKGA-IEY 271 + H+ ++N G + +A+ A Sbjct: 228 IRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNM 287 Query: 272 IPFPDHLKGRYQSFTQADMTKLRG-VGYDAEFKTVAEGVADYMAW 315 +P G T AD L +G+ E TV +GV +++ W Sbjct: 288 LPLQ---PGDVL-ETSADTKALYEVIGFTPE-TTVKDGVKNFVNW 327
>OUTRMMBRANEA#Outer membrane protein A signature. Length = 346 Score = 336 bits (864), Expect = e-117 Identities = 168/368 (45%), Positives = 218/368 (59%), Gaps = 28/368 (7%) Query: 1 MNKSILAVLVSGLLVSGAVQAAAQDNTWYAGGKAGWSKFFDVDQKQVVSDTLGALQNTST 60 M K+ +A+ V+ + QAA +DNTWY G K GWS++ D N T Sbjct: 1 MKKTAIAIAVALAGFATVAQAAPKDNTWYTGAKLGWSQYHDTGFIN---------NNGPT 51 Query: 61 SKDTLGLGAFAGYQLNPNLGFEFGYDWFGKYTSSGELSGVRVEGEAKSQMIQTTMKIGFP 120 ++ LG GAF GYQ+NP +GFE GYDW G+ G + G K+Q +Q T K+G+P Sbjct: 52 HENQLGAGAFGGYQVNPYVGFEMGYDWLGRMPYKGSVEN----GAYKAQGVQLTAKLGYP 107 Query: 121 VNDALDLYGRIGGGYAWTNSELSAQTATDFIKDTGNKHGAVFVGALGAEYAIDRDWAARL 180 + D LD+Y R+GG ++ + + G V A G EYAI + A RL Sbjct: 108 ITDDLDIYTRLGGMVWRADT-------KSNVYGKNHDTGVSPVFAGGVEYAITPEIATRL 160 Query: 181 EYQYTTPLGDTSLDRSGIEMDNGMLAFAMIYRFGQQGGEVAAPAPAPAAAPAPAVVVVPK 240 EYQ+T +GD G DNGML+ + YRFGQ AP A APAPA V K Sbjct: 161 EYQWTNNIGD--AHTIGTRPDNGMLSLGVSYRFGQG-----EAAPVVAPAPAPAPEVQTK 213 Query: 241 TFSLSSDVLFEFNKATLKPAASQALDNLFSQIVAANPKDGVATVIGHTDRIGSDAYNQAL 300 F+L SDVLF FNKATLKP ALD L+SQ+ +PKDG V+G+TDRIGSDAYNQ L Sbjct: 214 HFTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGL 273 Query: 301 SEQRARSVADYLIAKGLFADKVRVEGRGKSSPITGNNCSS-GSKPALIACLAPDRRVEVR 359 SE+RA+SV DYLI+KG+ ADK+ G G+S+P+TGN C + + ALI CLAPDRRVE+ Sbjct: 274 SERRAQSVVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 333 Query: 360 LEGVSQPV 367 ++G+ V Sbjct: 334 VKGIKDVV 341
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 42.8 bits (101), Expect = 2e-06 Identities = 28/120 (23%), Positives = 46/120 (38%), Gaps = 21/120 (17%) Query: 13 LVMGAAGYIGSYLVPHLQELGYRVIA---------GARRPCRL----PPGVEFRLAD--S 57 LV GAAG+IG ++ L E G++V+ + + RL PG +F D Sbjct: 4 LVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDLAD 63 Query: 58 LKPITLLPALAGIDTVFYLVHAMGA------GADFHRLEQQGVKNFAAAARAAGVRRIIY 111 + +T L A + VF H + + G N R ++ ++Y Sbjct: 64 REGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHLLY 123
>PF06580#Sensor histidine kinase Length = 349 Score = 28.7 bits (64), Expect = 0.044 Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 6/43 (13%) Query: 325 LENLIGNALRHA------AGRVTLSMARQQDHYLLEVADDGAG 361 ++ L+ N ++H G++ L + LEV + G+ Sbjct: 260 VQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSL 302
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 67.9 bits (166), Expect = 3e-15 Identities = 26/130 (20%), Positives = 58/130 (44%), Gaps = 5/130 (3%) Query: 17 MQR--ILFVEDDPEIGQLISSWLARHDMEVLLEPRGDLALARVEAEQPDLVLLDIMLPGQ 74 M IL +DD I +++ L+R +V + + A DLV+ D+++P + Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 75 DGLSLCRDLRPRFAG-PIVMLTSLDSDMNQILSLELGANDYILKTTPPPVLLARLR--VQ 131 + L ++ P++++++ ++ M I + E GA DY+ K L+ + + Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 132 FRQQGQQAPQ 141 ++ + Sbjct: 121 EPKRRPSKLE 130
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 147 bits (373), Expect = 9e-46 Identities = 78/255 (30%), Positives = 126/255 (49%), Gaps = 11/255 (4%) Query: 5 LQGKRVLITGAGRGIGLAIARLFAAQGAELWLAGRDEAALSRLADELGAEFGVPCHYLCV 64 ++GK ITGA +GIG A+AR A+QGA + + L ++ L AE + Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFP-A 64 Query: 65 DVAQPQAVKQAFQQLFAQTRQLDVLVNNAGILEEGLLGMVNQAQLEQTFSHNTFSVVYCS 124 DV A+ + ++ + +D+LVN AG+L GL+ ++ + E TFS N+ V S Sbjct: 65 DVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 125 QYTARLMQRSGGGSIINLASLMGRVGAAGLCSYAGSKAAVIGITQSLAKELAASRIRVNA 184 + ++ M GSI+ + S V + +YA SKAA + T+ L ELA IR N Sbjct: 125 RSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNI 184 Query: 185 IAPGFIDTEMAHAIPDDKFAERLA----------SIAMGRIGTPDEVAKVALFLASDLAS 234 ++PG +T+M ++ D+ I + ++ P ++A LFL S A Sbjct: 185 VSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAG 244 Query: 235 YVTGQVIGVDGGMTV 249 ++T + VDGG T+ Sbjct: 245 HITMHNLCVDGGATL 259
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 78.3 bits (193), Expect = 2e-18 Identities = 73/352 (20%), Positives = 133/352 (37%), Gaps = 49/352 (13%) Query: 14 RVLVTGHTGFKGSWLTIWLHRLGAEVTGI-SLAPPSTPNLFEAAEVAKICRHHIC----- 67 + LVTG GF G ++ L G +V GI +L +L +A R + Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQA-------RLELLAQPGF 54 Query: 68 -----DICVPGQFGPLILESQPEVVFHLAAQSLVRGGYAEPARTFETNLMGSVYLLDALR 122 D+ L E VF + VR P ++NL G + +L+ R Sbjct: 55 QFHKIDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCR 114 Query: 123 SSDSVKSVVMVTTDKVYSNLESIWPYRETDRLGGH--DPYSASKAASELVITSYRDAFLA 180 + ++ ++ ++ VY + P+ D + H Y+A+K A+EL+ +Y + Sbjct: 115 HNK-IQHLLYASSSSVYGLNRKM-PFSTDDSV-DHPVSLYAATKKANELMAHTYSHLY-- 169 Query: 181 ARGVAVATARAGNVIGGGDWS-ADRLIPDAVRAWQVGQTLAIRSPQAV-RPWQHVLEPIA 238 G+ R V G W D + +A G+++ + + + R + ++ + Sbjct: 170 --GLPATGLRFFTVY--GPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAE 225 Query: 239 AYMVLAQRLYHEPRLAGAYNFGPDSRDAASVAQ--VVNL------------AALSFGLCQ 284 A + RL A AAS+A V N+ AL L Sbjct: 226 AII----RLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGI 281 Query: 285 EAWRLVGDPGPHETGWLALETAKARHALNILPRWSLPQAIEQTMCWYRDWYQ 336 EA + + P + + +T + P ++ ++ + WYRD+Y+ Sbjct: 282 EAKKNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDFYK 333
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 39.4 bits (92), Expect = 5e-05 Identities = 13/34 (38%), Positives = 15/34 (44%) Query: 743 IAGLVTQYGGANSHMAIRCAEFGIPAAIGCGEQL 776 + G T GG SH AI IPA +G E Sbjct: 177 VKGFATDIGGRTSHSAIMSRSLEIPAVVGTKEVT 210
>ARGDEIMINASE#Bacterial arginine deiminase signature. Length = 409 Score = 29.4 bits (66), Expect = 0.031 Identities = 18/117 (15%), Positives = 39/117 (33%), Gaps = 8/117 (6%) Query: 194 RGDSASANQLADSLFADESQSGGEVVLVGAGPGDPGLLTLHALRQMQQADVVVYDRLVSD 253 R ++ S +LA SLF + ++ + +L P + + L + V Sbjct: 236 RTEAKSVEKLAISLFKN--KTSFDTILAFQIPKNRSYMHLDTVFTQIDYSVFTSFTSDDM 293 Query: 254 EVMALVRRDARRIFVGKQAGNHCVPQEGINQLLLDEAKKGQ-RVVRLKGGDPFIFGR 309 V + + H ++ + +L + +++ GGD R Sbjct: 294 YFSIYVLT-----YNPSSSKIHIKKEKARIKDVLSFYLGRKIDIIKCAGGDLIHGAR 345
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 133 bits (335), Expect = 3e-36 Identities = 100/401 (24%), Positives = 183/401 (45%), Gaps = 9/401 (2%) Query: 17 LLALGLATLLPMLAGSMASMLLPALGADFAVPFASLQWVLVAYLLGLTCLTVVAGRLGDR 76 L+ L + + +L + ++ LP + DF P AS WV A++L + T V G+L D+ Sbjct: 16 LIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQ 75 Query: 77 FGRRRLLLWGMGLFVLASLLCAQA-STIGWLLAARVLQGGGAACMLVLSLAMVGQLVSPA 135 G +RLLL+G+ + S++ S L+ AR +QG GAA L + +V + + Sbjct: 76 LGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKE 135 Query: 136 RRGRGMGLLGTLSACGTALGPSFGGLLLDVAGWQPAFLALLPIGLLALVCGLFGLPRDAA 195 RG+ GL+G++ A G +GP+ GG++ W ++L L+P+ + V L L + Sbjct: 136 NRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHW--SYLLLIPMITIITVPFLMKLLKKEV 193 Query: 196 CTEGERLNLASLSLLLVALLCYGLALTSTGALALWLGGGALLATAWLVRSELGAAAPLLP 255 +G ++ + L+ V ++ + L TS L + ++L+ V+ P + Sbjct: 194 RIKGH-FDIKGIILMSVGIVFFMLFTTSYSISFLIV---SVLSFLIFVKHIRKVTDPFVD 249 Query: 256 LALLGTRRLRGGLAASALVAGIMVLTLLIGPFYLQGVFGLDPFTSG-LLISGGPLLAALT 314 L G+ ++ G + + + P+ ++ V L G ++I G + + Sbjct: 250 PGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIF 309 Query: 315 GLPAGWLVDRVGAITVVRLGLLLMSGAAALLAVLSPALGPLGYLLPILLLTAGYALFQTA 374 G G LVDR G + V+ +G+ +S + + L + I+ + G + +T Sbjct: 310 GYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFL-LETTSWFMTIIIVFVLGGLSFTKTV 368 Query: 375 NNSAVMGGSGGQARGAVAGLLTLARNLGQLTGAAGLGALFA 415 ++ V Q GA LL L + TG A +G L + Sbjct: 369 ISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLS 409
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 29.8 bits (67), Expect = 0.021 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 3/36 (8%) Query: 49 TPKNILMIGPTGVGKTEIAR---RLAKLANAPFIKV 81 T +++ G +G GK +AR K N PF+ + Sbjct: 159 TDLTLMITGESGTGKELVARALHDYGKRRNGPFVAI 194
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 33.9 bits (77), Expect = 8e-04 Identities = 24/152 (15%), Positives = 44/152 (28%), Gaps = 8/152 (5%) Query: 56 DAPTIEEQVKANKPKAQNNGLPQ---EKWSYIERLENKQVDI-TEPPPQPGVLPPPPAET 111 + T+E++ KA + +P+ + E+ E Q P V P Sbjct: 1102 ETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQ 1161 Query: 112 MTLQPEKLPQPVPTDIPQPGTPIGQVQPYKPQPVQPAKPATGAPVASAQEQVIDRKAE-- 169 + QP P+ + P P A+ Q V + Sbjct: 1162 TNTTADT-EQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTP-ATTQPTVNSESSNKP 1219 Query: 170 RDRMERELRAELERERAEAAKAKAATPPATAD 201 ++R R +R+ + + A D Sbjct: 1220 KNRHRRSVRSVPHNVEPATTSSNDRSTVALCD 1251 Score = 32.0 bits (72), Expect = 0.003 Identities = 25/122 (20%), Positives = 37/122 (30%), Gaps = 12/122 (9%) Query: 117 EKLPQPVPTDIPQPGTPIGQVQPYKPQ-----------PVQPAKPATGAPVASAQEQVID 165 EK Q V T I P P PV P PAT + + Sbjct: 986 EKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSK 1045 Query: 166 RKAERDRMERELRAELERERAEAAK-AKAATPPATADNERYMMQCAALRSQDSAESLKAR 224 ++++ + E + E AK AK+ T NE +Q + A Sbjct: 1046 QESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETAT 1105 Query: 225 IA 226 + Sbjct: 1106 VE 1107
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 181 bits (461), Expect = 1e-56 Identities = 83/351 (23%), Positives = 140/351 (39%), Gaps = 48/351 (13%) Query: 1 MKVLVTGGCGYIGSHTCLALQAAGMEPVVVDNLCNSKAGVL--ARIAAISGCEPRFYQGD 58 MK LVTG G+IG H L AG + V +DNL + L AR+ ++ +F++ D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 59 IRDPALLDRIFSEQRIDAVIHFAALKAVGESTRLPLAYYENNLSGTLVLLQAMQRAGVHN 118 + D + +F+ + V AV S P AY ++NL+G L +L+ + + + Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 119 LVFSSSATVYGDPANTPIREDFP-RSATNPYGRSKLIIEEI------LEDLQRAEPHWSM 171 L+++SS++VYG P D + Y +K E + L L Sbjct: 121 LLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGL-------PA 173 Query: 172 TLLRYFNPVGAHESGTMGEDPQGIPNNLMPFLTQVAIGRRDCLSIFGNDYPTVDGTGVRD 231 T LR+F G P G P+ + T+ A+ + ++ G RD Sbjct: 174 TGLRFFTVYG----------PWGRPDMALFKFTK-AMLEGKSIDVYN------YGKMKRD 216 Query: 232 YIHVMDLAEGHVKALQHCA---------------SKGGVHVYNLGTGQGQSVLQMVAAFE 276 + ++ D+AE ++ S VYN+G ++ + A E Sbjct: 217 FTYIDDIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALE 276 Query: 277 AASGRPLPYRIEPRRPGDIAECWADPAKAERELGWRAQRDLAAMCADSWRW 327 A G + P +PGD+ E AD +G+ + + + W Sbjct: 277 DALGIEAKKNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNW 327
>PF05272#Virulence-associated E family protein Length = 892 Score = 31.2 bits (70), Expect = 0.010 Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 17/64 (26%) Query: 24 PGVKALDNVNLRVRPHSVHALMGENGAGKSTLLKCLFGIYEKDQGKIFFKGQEINFTSSK 83 PG K D + L G G GKSTL+ L G+ FF + + K Sbjct: 591 PGCKF-DYSVV---------LEGTGGIGKSTLINTLVGLD-------FFSDTHFDIGTGK 633 Query: 84 EALE 87 ++ E Sbjct: 634 DSYE 637
>ARGDEIMINASE#Bacterial arginine deiminase signature. Length = 409 Score = 416 bits (1072), Expect = e-146 Identities = 140/412 (33%), Positives = 229/412 (55%), Gaps = 13/412 (3%) Query: 1 MSKFYVGSEVGQLRRVMLHRPNLSLKRLTPSNCQDLLFDDVLSVERAGQEHDKFAQVLRD 60 ++ + SE+G+L++V+LHRP L+ LTP ++ LFDD+ +E A QEH+ FA +L++ Sbjct: 5 LNPINIFSEIGRLKKVLLHRPGEELENLTPFIMKNFLFDDIPYLEVARQEHEVFASILKN 64 Query: 61 QNVEVFLLTNLLAETLDVPEA-KTWLLQHQVSDYRLGTSFA-NDVRCFLADMPHRELARI 118 VE+ + +L++E L A + + + + + T F N ++ + + + + Sbjct: 65 NLVEIEYIEDLISEVLVSSVALENKFISQFILEAEIKTDFTINLLKDYFSSLTIDNMISK 124 Query: 119 LSGGLTYSEMPYSGVNMVVGMHAPTDFIIEPLPNHLFTRDTSCWVYGGVSINPMAKAARR 178 + G+ E+ ++ ++ FII+P+PN LFTRD + GV+IN M R+ Sbjct: 125 MISGVVTEELKNYTSSLDDLVNGANLFIIDPMPNVLFTRDPFASIGNGVTINKMFTKVRQ 184 Query: 179 RETNHVKAIYRWHPQFAGQDFIKYFGDEDRDYDNSTIEGGDVLVIGRGSVLIGMSERTTP 238 RET + I+++HP + + + + +++EGGD LV+ +G ++IG+SERT Sbjct: 185 RETIFAEYIFKYHPVYKE-NVPIWLNRWEE----ASLEGGDELVLNKGLLVIGISERTEA 239 Query: 239 QGVEHLARGLFK-HGQAKQVIAMQLPKHRSCMHLDTVMTHMDIDTFSVYPEVIRKDVNCW 297 + VE LA LFK ++A Q+PK+RS MHLDTV T +D F+ + + + Sbjct: 240 KSVEKLAISLFKNKTSFDTILAFQIPKNRSYMHLDTVFTQIDYSVFTSFTSDD-MYFSIY 298 Query: 298 SLTPGG-ATGMNIKEEGY-FVTAIEKALGVDQLKLI-TTGGDTFEAEREQWNDANNVLTV 354 LT ++ ++IK+E + LG ++ +I GGD REQWND NVL + Sbjct: 299 VLTYNPSSSKIHIKKEKARIKDVLSFYLG-RKIDIIKCAGGDLIHGAREQWNDGANVLAI 357 Query: 355 RPGVVVGYERNTYTNEKYDKAGITVLPIPGEELGRGRGGARCMSCPMERDGI 406 PG ++ Y RN TN+ +++ GI V IP EL RGRGG RCMS P+ R+ I Sbjct: 358 APGEIIAYSRNHVTNKLFEENGIKVHRIPSSELSRGRGGPRCMSMPLIREDI 409
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 379 bits (976), Expect = e-135 Identities = 138/314 (43%), Positives = 190/314 (60%), Gaps = 14/314 (4%) Query: 1 MKKPTVVVALGGNALLRRGEPLEADIQRKNIATAAKTIA-LIAQEYNVVLVHGNGPQVGL 59 M K VV+ALGGNAL +RG+ + N+ A+ IA +IA+ Y VV+ HGNGPQVG Sbjct: 1 MGK-RVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGS 59 Query: 60 LALQNSA---YTKVSPYPLDVLGAESQGMIGYMLIQELKNLMPSR----NVTALLTQVQV 112 L L A + P+DV GA SQG IGYM+ Q LKN + R V ++TQ V Sbjct: 60 LLLHMDAGQATYGIPAQPMDVAGAMSQGWIGYMIQQALKNELRKRGMEKKVVTIITQTIV 119 Query: 113 DPKDPAFANPTKFIGPVYEEAEARTLAEEKHWVVKAD-GKFFRRVVPSPLPQRIVEGDAI 171 D DPAF NPTK +GP Y+E A+ LA EK W+VK D G+ +RRVVPSP P+ VE + I Sbjct: 120 DKNDPAFQNPTKPVGPFYDEETAKRLAREKGWIVKEDSGRGWRRVVPSPDPKGHVEAETI 179 Query: 172 ETLIAQGHLIICTGGGGIPVTWDGQSLTGIEAVIDKDMSAAYLAKQIKADALLILTDADA 231 + L+ +G ++I +GGGG+PV + + G+EAVIDKD++ LA+++ AD +ILTD + Sbjct: 180 KKLVERGVIVIASGGGGVPVILEDGEIKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNG 239 Query: 232 VYLDWGKPTQRPLRITSPDELAGVK----FDAGSMGPKVEASCEFVKATGGMVGIGSLED 287 L +G ++ LR +EL F AGSMGPKV A+ F++ G I LE Sbjct: 240 AALYYGTEKEQWLREVKVEELRKYYEEGHFKAGSMGPKVLAAIRFIEWGGERAIIAHLEK 299 Query: 288 GLAILKGEAGTNIV 301 + L+G+ GT ++ Sbjct: 300 AVEALEGKTGTQVL 313
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 67.8 bits (165), Expect = 1e-15 Identities = 49/251 (19%), Positives = 92/251 (36%), Gaps = 20/251 (7%) Query: 3 ALVTGCGRRLGFYLCEQLVAAGWQVTG-SYRSERPELA----RLRALGVELVQADFAREE 57 A +TG + +G + L + G + Y E+ E + A E AD Sbjct: 11 AFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDSA 70 Query: 58 EVGKLIEALAVHQDLALVIHNASAFEPQAADPAAQLAQFDQFYRVHMAAPFQLNRALASQ 117 + ++ + ++ N + + +++ + V+ F +R+++ Sbjct: 71 AIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSKY 130 Query: 118 LARNANAGIIHITDIYIHAPAPQFASYVATKAGAHSLAMSFARELAP-AVRVNTIEPGPI 176 + + I+ + P A+Y ++KA A ELA +R N + PG Sbjct: 131 MMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPGST 190 Query: 177 -------LFLDEHGDAWR-----QQVLAKTPLAREGGLEPIWQAVQLLM--QNDYMTGAS 222 L+ DE+G + PL + I AV L+ Q ++T + Sbjct: 191 ETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHITMHN 250 Query: 223 IRVDGGRGLAV 233 + VDGG L V Sbjct: 251 LCVDGGATLGV 261
>PF06580#Sensor histidine kinase Length = 349 Score = 36.4 bits (84), Expect = 2e-04 Identities = 25/134 (18%), Positives = 51/134 (38%), Gaps = 15/134 (11%) Query: 287 ICQMLEENSRRLQTLIERLLDFNRLSQQEVFTLTPVALAPLLSELS-AEYRLALES---- 341 I ++ E+ + + ++ L + R S + L EL+ + L L S Sbjct: 182 IRALILEDPTKAREMLTSLSELMRYS----LRYSNARQVSLADELTVVDSYLQLASIQFE 237 Query: 342 KQISVHLPTDPITLQAEPYRLRLILDNLFSNAVSYG----ASGGQIWIRAGQDGNGSWLE 397 ++ +P + + +++ L N + +G GG+I ++ +D LE Sbjct: 238 DRLQFENQINPAIMDVQV--PPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLE 295 Query: 398 VANEGPAIPLAERE 411 V N G +E Sbjct: 296 VENTGSLALKNTKE 309
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 374 bits (963), Expect = e-129 Identities = 143/476 (30%), Positives = 229/476 (48%), Gaps = 62/476 (13%) Query: 2 SRILLVDDDASLLKLMSMRLRSQGYEVDTADSAEGALDRLRQQRADLVLSDLRMAGMDGL 61 + IL+ DDDA++ +++ L GY+V +A + DLV++D+ M + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 62 ALFERIQSQWLGLPVIIMTAHGTIPDAIQATRSGVFSFLTKPIDKDELFATIEHALSLTR 121 L RI+ LPV++M+A T AI+A+ G + +L KP D EL I AL+ + Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 122 PKQRQ-----DWQSLILTRNPQMEQLLIQAGSIAAMEVPVLIMGPSGSGKGVMTQALHQA 176 + + ++ R+ M+++ + ++ ++I G SG+GK ++ +ALH Sbjct: 124 RRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHDY 183 Query: 177 SSRRDKPLHVINCAALPWAALDLQLFG-EDG--------QSGLFEQAKGATLFLDEIGDL 227 RR+ P IN AA+P ++ +LFG E G +G FEQA+G TLFLDEIGD+ Sbjct: 184 GKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDM 243 Query: 228 SESLQAKLLQVLQEYGQGTP---------EVRVISSSHQDLVAAMEEGRFREDLFYRLNV 278 Q +LL+VLQ+ G+ T +VR+++++++DL ++ +G FREDL+YRLNV Sbjct: 244 PMDAQTRLLRVLQQ-GEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLNV 302 Query: 279 ANITLPPLSARSEDIPLLARQALDDYRSRHGDCAALGFSPEALALLAAAGWPGNVRQLCS 338 + LPPL R+EDIP L R + ++ F EAL L+ A WPGNVR+L + Sbjct: 303 VPLRLPPLRDRAEDIPDLVRHFVQ--QAEKEGLDVKRFDQEALELMKAHPWPGNVRELEN 360 Query: 339 VVEQLASLCCSPVIGA------------------------------------AMVESALS 362 +V +L +L VI ++ Sbjct: 361 LVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFG 420 Query: 363 GGSGGIPSFNEARAEFEKEYLIRLLRTTEGNVTLAANMAGRNRTDFYKLLNRHGIE 418 ++ AE E ++ L T GN AA++ G NR K + G+ Sbjct: 421 DALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGVS 476
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 81.0 bits (200), Expect = 5e-20 Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 1/118 (0%) Query: 2 RILIVEDEKTLAGQLAEQLRLSGFVTDLCHDGNEAGFLGETEPYDAIILDLGLPGRDGLS 61 IL+ +D+ + L + L +G+ + + D ++ D+ +P + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 VLKEWRSKGIDTPVLVLTARGQLHEKIEGLNAGADDYLTKPFQVAELVARV-HALVRR 118 +L + D PVLV++A+ I+ GA DYL KPF + EL+ + AL Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122
>PF06580#Sensor histidine kinase Length = 349 Score = 31.8 bits (72), Expect = 0.005 Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 20/70 (28%) Query: 351 LLENAFKW------SAGRLRISSAELGGWITLRIEDDGPGMSEDQIAKAVLRGVRLDEKV 404 L+EN K G++ + + G +TL +E+ G ++ Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTK-------------- 308 Query: 405 PGSGLGLNIV 414 +G GL V Sbjct: 309 ESTGTGLQNV 318
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 32.1 bits (72), Expect = 0.016 Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 1/102 (0%) Query: 271 RLENKLKPGTDIETLQGP-ANPLLASMGKLGRDYLHQLMELEVPQIEAFVDIEEMDGKGN 329 R E + K ++E L +NP S K + + Q E E+ Q+E D++E Sbjct: 169 RKEERAKNRANLENLTNAMSNPQNLSNNKNLSELIKQQRENELDQMERLEDMQEQAQANA 228 Query: 330 IKLLHAIQKDVLELAERGAGQFDLDASHHKSPLDPADGSLQI 371 +K + + K E A R + + KS P D S+++ Sbjct: 229 LKQIEELNKKQAEEAVRQRAKDKISIKTDKSQKSPEDNSIEL 270
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 32.9 bits (75), Expect = 0.008 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 7/54 (12%) Query: 929 DDEVVTEAAALAADLSTAQQEEAPQPSIFTF------PKGARPGTLLHSLFETI 976 + + EAA LAA S +Q P +T P GA+PG +++S +TI Sbjct: 513 PESTLLEAANLAAYYSKSQNSSN-VPVDYTEVKNVKKPNGAKPGMVIYSTNQTI 565
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 97.6 bits (243), Expect = 2e-25 Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 1/127 (0%) Query: 4 SSTHILVVDDHSEIRDLLKRFLEQHGLRVSCARDGKEMKRLLEEREFDLLVLDLMMPGED 63 + ILV DD + IR +L + L + G V + + R + + DL+V D++MP E+ Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 64 GLTLCRELRA-KSSLPIIMLTAMGEETDRIIGLEMGADDYLAKPFNPRELLARIKAVMRR 122 L ++ + LP+++++A I E GA DYL KPF+ EL+ I + Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 123 TQVEPQP 129 + P Sbjct: 122 PKRRPSK 128
>PF06580#Sensor histidine kinase Length = 349 Score = 33.7 bits (77), Expect = 0.001 Identities = 20/108 (18%), Positives = 41/108 (37%), Gaps = 27/108 (25%) Query: 364 VLQNLIGNAIKYA-------GSAEVSLERTDSELVIRVCDQGPGIDPARLEDVFKPFVRL 416 ++Q L+ N IK+ G + + + + + V + G Sbjct: 259 LVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSL---------------- 302 Query: 417 DEARNTESGSVGLGLA-IARTLVHQHGGELTLH-NREQGGLEARISLP 462 +NT+ + G GL + L +G E + + +QG + A + +P Sbjct: 303 -ALKNTKEST-GTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLIP 348
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 75.4 bits (185), Expect = 5e-17 Identities = 36/177 (20%), Positives = 66/177 (37%), Gaps = 31/177 (17%) Query: 90 QALGSGVIIDAKKGYVITNAHVVHEADEIKVNLK------------DGREYAAKKIGEDK 137 + SGV++ K ++TN HVV LK +G A + Sbjct: 101 TFIASGVVVG--KDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSG 158 Query: 138 QSDIALLQIKAE-------DLVQ-IKFADSDELRVGDYALAIGNPFGLGQTVTSGIVSAL 189 + D+A+++ ++V+ +++ E +V G P V+ + Sbjct: 159 EGDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYPGDKP-------VATM 211 Query: 190 GRSGLNIENLEN-FIQTDAAINSGNSGGALLNLRGELIGINTAILGPNGGNIGIGFA 245 S I L+ +Q D + GNSG + N + E+IGI+ + N + Sbjct: 212 WESKGKITYLKGEAMQYDLSTTGGNSGSPVFNEKNEVIGIHWGGVPNE-FNGAVFIN 267
>PF06580#Sensor histidine kinase Length = 349 Score = 30.6 bits (69), Expect = 0.001 Identities = 8/28 (28%), Positives = 15/28 (53%), Gaps = 2/28 (7%) Query: 28 RDAGRLEQELKKAHKELESYQGQINTHF 55 D ++ ++A +L + + QIN HF Sbjct: 149 IDQWKMASMAQEA--QLMALKAQINPHF 174
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 51.7 bits (124), Expect = 2e-09 Identities = 49/205 (23%), Positives = 79/205 (38%), Gaps = 17/205 (8%) Query: 169 RNIEKCVEKVGLRVDQLIFSALASSYAVLTEDEKELGVCVVDIGGGTMDMSLFTGGALRH 228 R I + + G R LI +A++ + G VVDIGGGT ++++ + + + Sbjct: 124 RAIRESAQGAGAREVFLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNGVVY 183 Query: 229 TKVIPYAGSTVTSDI------AYAFGTPPLDAEAIKVRYGCALGRLVSKEDNIEVPS--- 279 + + G I Y AE IK G A + IEV Sbjct: 184 SSSVRIGGDRFDEAIINYVRRNYGSLIGEATAERIKHEIGSAYPG--DEVREIEVRGRNL 241 Query: 280 VGGRPAR-SLQRQTLAEVIEPRYTELLSMVNDELVRVQSELKAQGVKHQLAAGVVLTGGA 338 G P +L + E ++ T ++S V L + EL + + G+VLTGG Sbjct: 242 AEGVPRGFTLNSNEILEALQEPLTGIVSAVMVALEQCPPELASDISE----RGMVLTGGG 297 Query: 339 AQIEGIVECAEQIFQSQVRVGE-PM 362 A + + + V V E P+ Sbjct: 298 ALLRNLDRLLMEETGIPVVVAEDPL 322
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 30.6 bits (69), Expect = 0.009 Identities = 11/87 (12%), Positives = 30/87 (34%), Gaps = 13/87 (14%) Query: 69 EAREQLAMLAAQVGTMQGQLGRLNALGERLTEKADLDPEEFNFKELPPMGGPSYDADLEV 128 E + ++ + QL ++ + E+ L + + ++ Sbjct: 256 EQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQL-------------FKNEILD 302 Query: 129 SLNELQDSMKHLSQQLSSREEQLSVLE 155 L + D++ L+ +L+ EE+ Sbjct: 303 KLRQTTDNIGLLTLELAKNEERQQASV 329
>SECA#SecA protein signature. Length = 901 Score = 1336 bits (3458), Expect = 0.0 Identities = 663/906 (73%), Positives = 767/906 (84%), Gaps = 7/906 (0%) Query: 1 MISTLLTKIIGSRNDRTLKALRKIVKQINAMEPQFEALSDAQLQAKTAEYRQRLEQGETL 60 M+ LLTK+ GSRNDRTL+ +RK+V INAMEP+ E LSD +L+ KTAE+R RLE+GE L Sbjct: 1 MLIKLLTKVFGSRNDRTLRRMRKVVNIINAMEPEMEKLSDEELKGKTAEFRARLEKGEVL 60 Query: 61 EQLLPEAFATVREASRRVFGMRHFDVQLIGGMVLNSNRIAEMKTGEGKTLTATLPAYLNA 120 E L+PEAFA VREAS+RVFGMRHFDVQL+GGMVLN IAEM+TGEGKTLTATLPAYLNA Sbjct: 61 ENLIPEAFAVVREASKRVFGMRHFDVQLLGGMVLNERCIAEMRTGEGKTLTATLPAYLNA 120 Query: 121 LSGRGVHVVTVNDYLAKRDAEANRPLFAFLGMTVDCNVPGMDASQKRDAYAADITYGTNN 180 L+G+GVHVVTVNDYLA+RDAE NRPLF FLG+TV N+PGM A KR+AYAADITYGTNN Sbjct: 121 LTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAYAADITYGTNN 180 Query: 181 EFGFDYLRDNMAFSPEQRVQRPLNYALVDEVDSVLIDEARTPLIISGPAEDSSELYIRVN 240 E+GFDYLRDNMAFSPE+RVQR L+YALVDEVDS+LIDEARTPLIISGPAEDSSE+Y RVN Sbjct: 181 EYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVN 240 Query: 241 KLIPLLVKQDKEDSEEYTGDGHYTVDEKNRQALLTENGQIFVEELLKKEGLLAEDDSLFS 300 K+IP L++Q+KEDSE + G+GH++VDEK+RQ LTE G + +EELL KEG++ E +SL+S Sbjct: 241 KIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYS 300 Query: 301 ATNISLLHHVNAGLRAHTLFERNVDYIVQKDEIVIVDEHTGRTMPGRRWSDGLHQAVEAK 360 NI L+HHV A LRAH LF R+VDYIV+ E++IVDEHTGRTM GRRWSDGLHQAVEAK Sbjct: 301 PANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAK 360 Query: 361 EGVKIQNENQTLASITFQNYFRLYDKLAGMTGTADTEAFEFQQIYGLDTVVIPTNKPMVR 420 EGV+IQNENQTLASITFQNYFRLY+KLAGMTGTADTEAFEF IY LDTVV+PTN+PM+R Sbjct: 361 EGVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIR 420 Query: 421 KDMGDLVYLTANEKYAAIIEDIRGCVERGQPVLVGTVSIENSELLSGILTKENIPHKVLN 480 KD+ DLVY+T EK AIIEDI+ +GQPVLVGT+SIE SEL+S LTK I H VLN Sbjct: 421 KDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLN 480 Query: 481 AKFHAMEAEIVAQAGQTGAVTIATNMAGRGTDIVLGGNWQAEIAQLENPTEAQIAELKAA 540 AKFHA EA IVAQAG AVTIATNMAGRGTDIVLGG+WQAE+A LENPT QI ++KA Sbjct: 481 AKFHANEAAIVAQAGYPAAVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKAD 540 Query: 541 WQVRHDAVLAAGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSMEDTLMRIFAS 600 WQVRHDAVL AGGLHIIGTERHESRRIDNQLRGRSGRQGD GSSRFYLSMED LMRIFAS Sbjct: 541 WQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDALMRIFAS 600 Query: 601 DRVTGMMKKLGMEEGEAIEHPWVTKAIENAQRKVEGRNFDIRKSLLEFDDVANDQRKVVY 660 DRV+GMM+KLGM+ GEAIEHPWVTKAI NAQRKVE RNFDIRK LLE+DDVANDQR+ +Y Sbjct: 601 DRVSGMMRKLGMKPGEAIEHPWVTKAIANAQRKVESRNFDIRKQLLEYDDVANDQRRAIY 660 Query: 661 EQRNELLDTSDISETIHVIRDDVYGAIIDEYIPPQSLEEMWDVPGLEARLKSDFALDLPL 720 QRNELLD SD+SETI+ IR+DV+ A ID YIPPQSLEEMWD+PGL+ RLK+DF LDLP+ Sbjct: 661 SQRNELLDVSDVSETINSIREDVFKATIDAYIPPQSLEEMWDIPGLQERLKNDFDLDLPI 720 Query: 721 QQWLAEDDKLYEEKLRERILDEATKLYAHKEELVGKEVLRNFEKAVMLQTLDGLWKEHLA 780 +WL ++ +L+EE LRERIL ++ ++Y KEE+VG E++R+FEK VMLQTLD LWKEHLA Sbjct: 721 AEWLDKEPELHEETLRERILAQSIEVYQRKEEVVGAEMMRHFEKGVMLQTLDSLWKEHLA 780 Query: 781 AMDHLRQGIHLRGYAQKNPKQEYKRESFDLFTQMLETLKRDVVSILSRVQVQ-ERDVEAM 839 AMD+LRQGIHLRGYAQK+PKQEYKRESF +F MLE+LK +V+S LS+VQV+ +VE + Sbjct: 781 AMDYLRQGIHLRGYAQKDPKQEYKRESFSMFAAMLESLKYEVISTLSKVQVRMPEEVEEL 840 Query: 840 EEQQRQQAEAAPRTYTHAAADNQLADDEAQAEAAPVTFVRDEQKVGRNDPCPCGSGKKYK 899 E+Q+R +AE A D+ A AA + E+KVGRNDPCPCGSGKKYK Sbjct: 841 EQQRRMEAERL------AQMQQLSHQDDDSAAAAALAAQTGERKVGRNDPCPCGSGKKYK 894 Query: 900 HCHGQL 905 CHG+L Sbjct: 895 QCHGRL 900
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 371 bits (953), Expect = e-132 Identities = 253/290 (87%), Positives = 264/290 (91%) Query: 1 MLLITDVFHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYLGYFNPETLPQ 60 M L+ ++ H LPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEY YFNP+ Sbjct: 1 MALLLELAHGLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRSYFNPDDEGV 60 Query: 61 QEERYNLMVPRSACPHCGHAITAMENIPLLSWLWLKGRCRECQAPISVRYPLVELLTALL 120 E YNLMVPRS CPHC H ITA+ENIPLLSWLWL+GRCR CQAPIS RYPLVELLTALL Sbjct: 61 DEPPYNLMVPRSCCPHCNHPITALENIPLLSWLWLRGRCRGCQAPISARYPLVELLTALL 120 Query: 121 SLVVAATFAPGWGLLAALLLTWVLVALTFIDLDKMLLPDQLTLPLLWGGLLFNLAGGFIP 180 S+ VA T APGWG LAALLLTWVLVALTFIDLDKMLLPDQLTLPLLWGGLLFNL GGF+ Sbjct: 121 SVAVAMTLAPGWGTLAALLLTWVLVALTFIDLDKMLLPDQLTLPLLWGGLLFNLLGGFVS 180 Query: 181 LADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL 240 L DAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL Sbjct: 181 LGDAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL 240 Query: 241 VGAFIGIGLILLRNHHQNKPIPFGPYLAIAGWIALLWGDTITRWYLTTFL 290 VGAF+GIGLILLRNHHQ+KPIPFGPYLAIAGWIALLWGD+ITRWYLT FL Sbjct: 241 VGAFMGIGLILLRNHHQSKPIPFGPYLAIAGWIALLWGDSITRWYLTNFL 290
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 396 bits (1020), Expect = e-139 Identities = 114/405 (28%), Positives = 219/405 (54%), Gaps = 9/405 (2%) Query: 16 AFRWSGVNRKGQKVSGELQADSINTVKAELRKQGVNVTKV--------SKKSQGLFSKGG 67 + + ++ +G+K G +ADS + LR++G+ V S GL + Sbjct: 3 QYHYQALDAQGKKCRGTQEADSARQARQLLRERGLVPLSVDENRGDQQKSGSTGLSLRRK 62 Query: 68 AKIKPMDIAVVSRQITTMLSAGVPLVQSLQIIARSHEKAAMRELMGQIAADVETGTPMSE 127 ++ D+A+++RQ+ T+++A +PL ++L +A+ EK + +LM + + V G +++ Sbjct: 63 IRLSTSDLALLTRQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSLAD 122 Query: 128 ALRRHPRHFDDLYCDLVEAGEQSGALETIYDRIATYREKSEALKSKIKKAMFYPTMVILV 187 A++ P F+ LYC +V AGE SG L+ + +R+A Y E+ + ++S+I++AM YP ++ +V Sbjct: 123 AMKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVLTVV 182 Query: 188 AIVVTSILLLFVIPQFEDIFKSFGAELPIFTQFVIGISRFMQNWWYVIFGGIALAIFLYV 247 AI V SILL V+P+ + F LP+ T+ ++G+S ++ + + + + Sbjct: 183 AIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLALLAGFMAF- 241 Query: 248 RAWRASQKVKDNTDKFILTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALVSAAGAS 307 R +K + + + +L +P++G I AR+ARTLS ++ +PL+ A+ + Sbjct: 242 RVMLRQEKRRVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAMRISGDVM 301 Query: 308 GNYVYRTAVMAIRNEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIF 367 N R + + V G+ ++ A+ LFP M+ M+ GE SG +D ML + A Sbjct: 302 SNDYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMIASGERSGELDSMLERAADNQ 361 Query: 368 EQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVVAMYLPIFKLGSVI 412 ++E + L EPL++V + +V +V+A+ PI +L +++ Sbjct: 362 DREFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPILQLNTLM 406
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 43.3 bits (102), Expect = 4e-08 Identities = 13/30 (43%), Positives = 22/30 (73%) Query: 1 MKKQSGFTLIELMIVVAIVAILAAIALPAY 30 KQ GFTL+E+M+V+ I+ +LA++ +P Sbjct: 4 TDKQRGFTLLEIMVVIVIIGVLASLVVPNL 33
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 31.0 bits (70), Expect = 0.012 Identities = 52/224 (23%), Positives = 81/224 (36%), Gaps = 41/224 (18%) Query: 23 VLLTGEVGTGKTTVSRCLLQQLPAETEIAYILN-----PSLTERDLLAAICDEFQLAYGQ 77 +++TGE GTGK V+R L +N L E +L F A + Sbjct: 163 LMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTR 222 Query: 78 DAGLKQLFDLIRDHLLANLAAGKRSVVLVDEAQHLLPGVLEQLRLLTNLETDE------- 130 G + A ++ L DE + Q RLL L+ E Sbjct: 223 STGRFEQ-------------AEGGTLFL-DEIGDMPMDA--QTRLLRVLQQGEYTTVGGR 266 Query: 131 ---KKLLQVVLIGQPELQQMLRQPLLRQ-LAQRITA-RYHLLPLS--CQDVDAYVRFRLQ 183 + +++V +L+Q + Q L R+ L R+ L PL +D+ VR +Q Sbjct: 267 TPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQ 326 Query: 184 VA---GCVQPIFTPRAIQTL--HRLSGGIPRLINLICDRALIAA 222 A G F A++ + H G + L NL+ R Sbjct: 327 QAEKEGLDVKRFDQEALELMKAHPWPGNVRELENLV-RRLTALY 369
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 42.9 bits (101), Expect = 9e-07 Identities = 18/115 (15%), Positives = 40/115 (34%), Gaps = 8/115 (6%) Query: 50 ITPEVSGKIIKIAVKDNQLVKAGEEIFTLDPEPYRIALDNALAALAKAKSDL--DKAEHE 107 I P + + +I VK+ + V+ G+ + L ++L +A+ + + Sbjct: 99 IKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSR 158 Query: 108 ASRRSGLSRSVISAEAVDEARLNAQAM------KAAYQVAQANLEQARWSLAKTR 156 + + L + E + + + K + Q Q +L K R Sbjct: 159 SIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKR 213
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 63.7 bits (155), Expect = 4e-13 Identities = 50/176 (28%), Positives = 72/176 (40%), Gaps = 8/176 (4%) Query: 34 FIQLVSALDFM---MIMPLGPDLSRALDIS---PTYIGYLGGGYALAAALSSLLCARYID 87 I ALD + +IMP+ P L R L S + G L YAL + + D Sbjct: 9 VILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSD 68 Query: 88 RFDRKQVALLSLLGVTLSTWACTLAWNMESLFFTRLLAGIFAGPATSIAMAIVVDATPVP 147 RF R+ V L+SL G + A + L+ R++AGI G ++A A + D T Sbjct: 69 RFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGI-TGATGAVAGAYIADITDGD 127 Query: 148 QRGRAMALVMGAFSLSAIAGVPLGLALAMLKGWSAPFYVVGGLGLCVSVMVSMRLP 203 +R R + F +AG LG + APF+ L + LP Sbjct: 128 ERARHFGFMSACFGFGMVAGPVLGGLMGGF-SPHAPFFAAAALNGLNFLTGCFLLP 182
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 70.9 bits (173), Expect = 3e-15 Identities = 35/235 (14%), Positives = 82/235 (34%), Gaps = 7/235 (2%) Query: 56 EQAKQIQQQKSQPKPQKVEKEKDKEDTDIAKRELAQQQERLRIAETKRKEAEEATRKAEA 115 E+ Q + P ++ + ++ E+A+ E +E AE Sbjct: 986 EKRNQTVDTTNITTPNNIQADVPSVPSNNE--EIARVDEAPVPPPAPATPSETTETVAEN 1043 Query: 116 EKQKKVAEQKQAEEKAQKAEEARKLEEQKAKKVEAERKAAEEESKALALKKKKEQEKKEA 175 KQ+ +K ++ + + R++ ++ V+A + E K+ + E KE Sbjct: 1044 SKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKET 1103 Query: 176 ----EEKQAKADAAKKAEAEKKAKQEAEKKAKAEADKKAKAEAEKKAKAEADKKAKEAKE 231 +E++AK + K E K Q + K+ ++E + AE ++ + K +++ Sbjct: 1104 ATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQ-AEPARENDPTVNIKEPQSQT 1162 Query: 232 EAAKKAKADAEKKAKAEADKQAKIAAERKRKAAEEAKLQKEMEDMMQQQLAAEAN 286 + A++ + + + E + +N Sbjct: 1163 NTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSN 1217 Score = 65.9 bits (160), Expect = 1e-13 Identities = 30/211 (14%), Positives = 69/211 (32%), Gaps = 13/211 (6%) Query: 56 EQAKQIQQQKSQPK-PQKVEKEKDKEDTDIAKRELAQQQERLRIAETKRKEAEEATRKAE 114 +++K +++ + +E KE AK + + +A++ E +E Sbjct: 1046 QESKTVEKNEQDATETTAQNREVAKE----AKSNVKANTQTNEVAQSG-SETKETQTTET 1100 Query: 115 AEKQKKVAEQKQAEEKAQKAEEARKLEEQKAK--KVEAERKAAE---EESKALALKKKKE 169 E E+K E + E + + K + E + AE E + +K+ + Sbjct: 1101 KETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQS 1160 Query: 170 QEKKEAEEKQAKADAAKKAEAEKKAKQEAEKKAKAEADKKAK--AEAEKKAKAEADKKAK 227 Q A+ +Q + + E + + A + +E+ K K Sbjct: 1161 QTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPK 1220 Query: 228 EAKEEAAKKAKADAEKKAKAEADKQAKIAAE 258 + + + E + D+ + Sbjct: 1221 NRHRRSVRSVPHNVEPATTSSNDRSTVALCD 1251 Score = 64.3 bits (156), Expect = 4e-13 Identities = 29/208 (13%), Positives = 73/208 (35%), Gaps = 9/208 (4%) Query: 91 QQQERLRIAETKRKEAEEATRKAE-AEKQKKVAEQKQAEEKAQKAEEARKLEEQKAKKVE 149 + ++R + +T + + + E A E + Sbjct: 984 EVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAEN 1043 Query: 150 AERKAAEEESKALALKKKKEQEKKEAEEKQAKADAAKKAEAEKKAKQEAEKKAKAEADKK 209 +++++ E + Q ++ A+E ++ A + ++ E ++ E + Sbjct: 1044 SKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKET 1103 Query: 210 AKAEAEKKAKAEADKKAKEAK---EEAAKKAKAD-----AEKKAKAEADKQAKIAAERKR 261 A E E+KAK E +K + K + + K+ +++ AE + + K + Sbjct: 1104 ATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTN 1163 Query: 262 KAAEEAKLQKEMEDMMQQQLAAEANARS 289 A+ + KE ++Q + + Sbjct: 1164 TTADTEQPAKETSSNVEQPVTESTTVNT 1191 Score = 59.7 bits (144), Expect = 1e-11 Identities = 33/248 (13%), Positives = 80/248 (32%), Gaps = 8/248 (3%) Query: 55 NEQAKQIQQQKSQPKPQKVEKEKDKEDTDIAKRELAQQQERLRIAETK----RKEAEEAT 110 NE+ ++ + P E + + +K+E ++ + A R+ A+EA Sbjct: 1014 NEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAK 1073 Query: 111 RKAEAE-KQKKVAEQKQAEEKAQK--AEEARKLEEQKAKKVEAERKAAEEESKALALKKK 167 +A + +VA+ ++ Q +E +E+++ KVE E+ E + K Sbjct: 1074 SNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKT-QEVPKVTSQVSPK 1132 Query: 168 KEQEKKEAEEKQAKADAAKKAEAEKKAKQEAEKKAKAEADKKAKAEAEKKAKAEADKKAK 227 +EQ + + + + ++ Q + K+ + E+ Sbjct: 1133 QEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTG 1192 Query: 228 EAKEEAAKKAKADAEKKAKAEADKQAKIAAERKRKAAEEAKLQKEMEDMMQQQLAAEANA 287 + E + + R+ + ++ + A + Sbjct: 1193 NSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDL 1252 Query: 288 RSQAASAA 295 S +A Sbjct: 1253 TSTNTNAV 1260 Score = 43.9 bits (103), Expect = 8e-07 Identities = 18/130 (13%), Positives = 46/130 (35%), Gaps = 1/130 (0%) Query: 171 EKKEAEEKQAKADAAKKAEAEKKAKQEAEKKAKAEADKKAKAEAEKKAKAEADKKAKEAK 230 +A+ ++ + A ++ +E + AE K+ +K ++A Sbjct: 1001 NNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSET-TETVAENSKQESKTVEKNEQDAT 1059 Query: 231 EEAAKKAKADAEKKAKAEADKQAKIAAERKRKAAEEAKLQKEMEDMMQQQLAAEANARSQ 290 E A+ + E K+ +A+ Q A+ + E + + ++++ A+ Sbjct: 1060 ETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKT 1119 Query: 291 AASAAAQGEV 300 +V Sbjct: 1120 QEVPKVTSQV 1129
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 115 bits (290), Expect = 8e-31 Identities = 99/405 (24%), Positives = 163/405 (40%), Gaps = 24/405 (5%) Query: 4 IKGQASLWVLVMTVTLAVAGFSLPSPVLAPLLLDPAQGMLTPAASDWSRKVWLGVIMGLY 63 +K L V++ TV L G L PVL LL D L + + G+++ LY Sbjct: 1 MKPNRPLIVILSTVALDAVGIGLIMPVLPGLLRD-----LVHSNDVTAH---YGILLALY 52 Query: 64 PLFQLVGAPWLGKLSDRHGRKPVLTLCLVGVLVGYALMALGIAWRSLPLLLLSRVVEGFF 123 L Q AP LG LSDR GR+PVL + L G V YA+MA L +L + R+V G Sbjct: 53 ALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATA---PFLWVLYIGRIVAGIT 109 Query: 124 NGDIAIVQAMAADMSTAKTKARSFAWINIGMNLGWVVGPMIGGYAAVVSGDYSLAA--WL 181 A+ A AD++ +AR F +++ G V GP++GG G +S A + Sbjct: 110 GATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLM----GGFSPHAPFFA 165 Query: 182 AVAMTLVNLLLVLWLLPNRPAAARS----EQPAPALSSRQLLLQPALLPYFVLTLLSYGA 237 A A+ +N L +LLP R E P S R + + + Sbjct: 166 AAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLV 225 Query: 238 VQLYFTYFNVWLVERLAWDPVQLAQA-AVLVSVPMILGSWLGSRLARHWRGSSLGVVGHL 296 Q+ + ++ +R WD + + A + + + + +A ++G + Sbjct: 226 GQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMI 285 Query: 297 VMAAGMLMFVLPGHWWGLALTFIPTGIGMSLGELATSVAVSNRSHAEQQGQAMGLYRGL- 355 G ++ W + G +G A +S + E+QGQ G L Sbjct: 286 ADGTGYILLAFATRGWMAFPIMVLLASG-GIGMPALQAMLSRQVDEERQGQLQGSLAALT 344 Query: 356 AVGSEILAVVVGSLVLLAGTEWPFYLAALCSLLCAIGFYGLRRAA 400 ++ S + ++ ++ + T W + + L + LRR Sbjct: 345 SLTSIVGPLLFTAIYAASITTWNGWAWIAGAALYLLCLPALRRGL 389
>PF07675#Cleaved Adhesin Length = 1358 Score = 29.3 bits (65), Expect = 0.023 Identities = 13/34 (38%), Positives = 18/34 (52%) Query: 70 AYLYDPVQEQIQVGDPLAVAPLSRLLAEVQAHQM 103 Y PV +QIQ G+P P+S L A Q ++ Sbjct: 315 RSNYLPVIKQIQAGEPSPYQPVSNLTATAQGQKV 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 31.3 bits (71), Expect = 0.010 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 3/51 (5%) Query: 3 ILLIEDDAMLSTALSRGLNEQGITPAQLTHCKELATLPTLLRQQSFDVVIC 53 IL+ +DDA + T L++ L+ G + ATL + D+V+ Sbjct: 6 ILVADDDAAIRTVLNQALSRAGY---DVRITSNAATLWRWIAAGDGDLVVT 53
>ACETATEKNASE#Acetate kinase family signature. Length = 400 Score = 495 bits (1277), Expect = e-178 Identities = 176/402 (43%), Positives = 263/402 (65%), Gaps = 14/402 (3%) Query: 5 VLILNCGSSSLKFAVMDAETGEDMLSGLAECFNLDDARIKWKLHGVKGEAMLGAGAAHQE 64 +L++NCGSSSLK+ +++++ G + GLAE ++D+ + +G K + H++ Sbjct: 3 ILVINCGSSSLKYQLIESKDGNVLAKGLAERIGINDSLLTHNANGEKIKIKKDM-KDHKD 61 Query: 65 ALDHIVGHILPQD----PTLAEQLVAIGHRIVHGGEQFSRSVRIDDGVIAGIEAAIPFAP 120 A+ ++ ++ D ++E + A+GHR+VHGGE F+ SV I D V+ I I AP Sbjct: 62 AIKLVLDALVNSDYGVIKDMSE-IDAVGHRVVHGGEYFTSSVLITDDVLKAITDCIELAP 120 Query: 121 LHNPAHLIGIRAALKVFPALAEKNVAVFDTAFHQTLPQEAYLYALPYKLYKENGIRRYGA 180 LHNPA++ GI+A ++ P + VAVFDTAFHQT+P AYLY +PY+ Y + IR+YG Sbjct: 121 LHNPANIEGIKACTQIMPDV--PMVAVFDTAFHQTMPDYAYLYPIPYEYYTKYKIRKYGF 178 Query: 181 HGTSHRFIAEETAKALGKPLAELNIINCHLGNGASVCAIRGGESVDTSMGLTPLEGLAMG 240 HGTSH+++++ A+ L KP+ L II CHLGNG+S+ A++ G+S+DTSMG TPLEGLAMG Sbjct: 179 HGTSHKYVSQRAAEILNKPIESLKIITCHLGNGSSIAAVKNGKSIDTSMGFTPLEGLAMG 238 Query: 241 TRSGDIDPAVVFFMHDQLGYSVEQINHTLTRESGLLGMTEASSDCRYVTTNYAT--DAGA 298 TRSG IDP+++ ++ ++ S E++ + L ++SG+ G++ SSD R + D A Sbjct: 239 TRSGSIDPSIISYLMEKENISAEEVVNILNKKSGVYGISGISSDFRDLEDAAFKNGDKRA 298 Query: 299 KRALDVFTYRVAKYVGAYAAAMDGRLDALVFTGGIGENAAMVREMVLARLALFGFKIDKE 358 + AL+VF YRV K +G+YAAAM G +D +VFT GIGEN +RE +L L GFK+DKE Sbjct: 299 QLALNVFAYRVKKTIGSYAAAMGG-VDVIVFTAGIGENGPEIREFILDGLEFLGFKLDKE 357 Query: 359 ANNAAVLGGEGPITAEGSRL-ALVMPTNEELVIARDALSLVG 399 N G E I+ S++ +V+PTNEE +IA+D +V Sbjct: 358 KNKVR--GEEAIISTADSKVNVMVVPTNEEYMIAKDTEKIVE 397
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 64.1 bits (156), Expect = 5e-13 Identities = 56/186 (30%), Positives = 78/186 (41%), Gaps = 22/186 (11%) Query: 35 VDDGKSTLIGRLLHDSQQIYEDQLKALESDSQKLGTTGEKLDLALLVDGLQAEREQGITI 94 VD GK+TL LL++S I E S GTT D ER++GITI Sbjct: 12 VDAGKTTLTESLLYNSGAITE-------LGSVDKGTT--------RTDNTLLERQRGITI 56 Query: 95 DVAYRYFSTAKRKFIISDTPGHEQYTRNMATGASTCDLAIILIDARKGVLDQTRRHSFIA 154 F K I DTPGH + + S D AI+LI A+ GV QTR Sbjct: 57 QTGITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHAL 116 Query: 155 SLLGIKQFVVAVNKMDLVEFSQEVFERISAEYREFAKKLSVDTIHIVPVSALDGDNVVNP 214 +GI + +NK+D + +S Y++ +KLS + + V V N Sbjct: 117 RKMGIPT-IFFINKID------QNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNF 169 Query: 215 SDKLAW 220 ++ W Sbjct: 170 TESEQW 175
>adhesinmafb#Neisseria meningitidis: adhesin MafB signature. Length = 467 Score = 29.3 bits (65), Expect = 0.002 Identities = 12/46 (26%), Positives = 16/46 (34%) Query: 52 ADAGFTGSTVIAEFASQADAKAWADADPYVAAGVYAKVTIKPFKKV 97 A G GS E ++ W +P A V A + KV Sbjct: 277 AVIGGLGSVAGFEKNTREAVDRWIQENPNAAETVEAVFNVAAAAKV 322
>CABNDNGRPT#NodO calcium binding signature. Length = 479 Score = 96.2 bits (239), Expect = 6e-22 Identities = 43/142 (30%), Positives = 57/142 (40%), Gaps = 11/142 (7%) Query: 4842 NDKADVLIGGDGNDILFGQGGDDFLFGGAGNDILFGGAGNDTLYGESGNDTLYGGSGNDT 4901 D D + I +G + G GN + G + G SGND L G S ++ Sbjct: 301 TDTFDFSGYSNNQRINLNEGSFSDVGGLKGNVSIAHGVTIENAIGGSGNDILVGNSADNI 360 Query: 4902 LYGGSGDDTLSGGLGNDILVGGLGNDILKGDGGADTFTWLQGDTAAGSVAKDYVVDFSKA 4961 L GG+G+D L GG G D L GG G D G D+ A D++ DF Sbjct: 361 LQGGAGNDVLYGGAGADTLYGGAGRDTFVYGSGQDSTV----------AAYDWIADFQ-K 409 Query: 4962 EGDKLDLSDLLDHDGSRNQNDL 4983 DK+DLS + D Sbjct: 410 GIDKIDLSAFRNEGQLSFVQDQ 431 Score = 58.8 bits (142), Expect = 4e-10 Identities = 36/124 (29%), Positives = 53/124 (42%), Gaps = 5/124 (4%) Query: 4220 TTQDSVVGTSGNDYIVSVKGGGDYFVGGAGNDVLVGGNSVSGDTLDGGTGNDILVAGLGG 4279 + V G GN I + +GG+GND+LVG ++ + L GG GND+L G G Sbjct: 320 GSFSDVGGLKGNVSIAHGVTI-ENAIGGSGNDILVGNSA--DNILQGGAGNDVLYGGAGA 376 Query: 4280 DTLFGGAGTDLAVLMGSRANYVIERRSDGGFNFLVKENGVTISKSLYDIELVQFDDGIYQ 4339 DTL+GGAG D + D +F + + +S + +L D Sbjct: 377 DTLYGGAGRD--TFVYGSGQDSTVAAYDWIADFQKGIDKIDLSAFRNEGQLSFVQDQFTG 434 Query: 4340 FNQT 4343 Q Sbjct: 435 KGQE 438
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 49.8 bits (119), Expect = 7e-09 Identities = 24/130 (18%), Positives = 49/130 (37%), Gaps = 16/130 (12%) Query: 180 MHGRKVLIVDDSSTARNLVRETLGQLGLEVIECQDGLQALNLL-KGWCDAGKKVTDEILL 238 M G +L+ DD + R ++ + L + G +V + + G D L Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGD----------L 50 Query: 239 MITDAEMPEMDGYRLTHEIRS-DARMSDLFITLNTSLSGNFNEAMVKKVGCDRFISKFQP 297 ++TD MP+ + + L I+ + L ++ + +A + G ++ K Sbjct: 51 VVTDVVMPDENAFDLLPRIKKARPDLPVLVMSAQNTFM-TAIKAS--EKGAYDYLPK-PF 106 Query: 298 DLLVGVAQER 307 DL + Sbjct: 107 DLTELIGIIG 116
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.7 bits (66), Expect = 0.011 Identities = 14/29 (48%), Positives = 16/29 (55%) Query: 41 LVGASGSGKSTLLGLLAGLDLPSQGDIEI 69 L G G GKSTL+ L GLD S +I Sbjct: 601 LEGTGGIGKSTLINTLVGLDFFSDTHFDI 629
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 46.7 bits (111), Expect = 5e-08 Identities = 27/150 (18%), Positives = 45/150 (30%), Gaps = 21/150 (14%) Query: 1 MKILITGGTGFIGRRLVAHL-KVAHEVLV----------------LTRQGSRAYDLLGHD 43 MK L+TG GFIG + L + H+V+ L + D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 44 VKLLDSLDRLDNLNDVDAVINLAGEPIANGRWSERRKQLLCDSRWLLTEQLVDLVKLSDT 103 + + + L + V R+S DS +++ + Sbjct: 61 LADREGMTDLFASGHFERVFISPHR--LAVRYSLENPHAYADSNLTGFLNILEGCR--HN 116 Query: 104 PPRVLINASAIGWYGRQGDEPLDEQCQTPH 133 + L+ AS+ YG P H Sbjct: 117 KIQHLLYASSSSVYGLNRKMPFSTDDSVDH 146
>SUBTILISIN#Subtilisin serine protease family (S8) signature. Length = 326 Score = 212 bits (541), Expect = 5e-68 Identities = 106/306 (34%), Positives = 146/306 (47%), Gaps = 28/306 (9%) Query: 82 PDAKRYASAETLPYGIPMVQAPQLSDAAAGE-VLVCIIDSGYSGGHPDLP---HGAQVQG 137 K+ +P G+ M+QAP + + G V V ++D+G HPDL G + Sbjct: 11 QVIKQEQQVNEIPRGVEMIQAPAVWNQTRGRGVKVAVLDTGCDADHPDLKARIIGGRNFT 70 Query: 138 SNDAGTGSWSSDENGHGTHVAGTIAAVGGNDQGVVGVLPNQSVPLQIVKVFGANGWAYSS 197 +D G D NGHGTHVAGTIAA N+ GVVGV P L I+KV G Sbjct: 71 DDDEGDPEIFKDYNGHGTHVAGTIAATE-NENGVVGVAPE--ADLLIIKVLNKQGSGQYD 127 Query: 198 NLVGALN-ACKQGMSNRGFTHMVINMSLGGSVPSKTEEQAFNQAYGQNVLSVAAAGNAG- 255 ++ + A +Q + +I+MSLGG +A +A +L + AAGN G Sbjct: 128 WIIQGIYYAIEQKVD-------IISMSLGGPEDVPELHEAVKKAVASQILVMCAAGNEGD 180 Query: 256 ----NTSKSYPASYGSVVSVAAIDANKQLAYFSQRNDQVELAAPGVSVLSTVPTG-YAYY 310 YP Y V+SV AI+ ++ + FS N++V+L APG +LSTVP G YA + Sbjct: 181 GDDRTDELGYPGCYNEVISVGAINFDRHASEFSNSNNEVDLVAPGEDILSTVPGGKYATF 240 Query: 311 SGTSMATPHVVGVAALVWSQR-----LECSNDQLRQTLRSSAQDLGALGRDNSYGYGLVQ 365 SGTSMATPHV G AL+ + + +L L LG G GL+ Sbjct: 241 SGTSMATPHVAGALALIKQLANASFERDLTEPELYAQLIKRTIPLG--NSPKMEGNGLLY 298 Query: 366 AKAAAD 371 A + Sbjct: 299 LTAVEE 304
>FLGFLIJ#Flagellar FliJ protein signature. Length = 147 Score = 32.1 bits (72), Expect = 0.003 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Query: 407 QMRRWGQIPEAKPDAWFEQVAK-AVYQPEVYRQAAEALIAEGKLKAQDFPDFASEQGYRG 465 Q+ +W Q + ++W E+ + +Q RQ+ AL+AE +L + +FA R Sbjct: 86 QLNQWTQKVDIALNSWREKKQRLQAWQTLQERQSTAALLAENRLDQKKMDEFAQRAAMRK 145 Query: 466 PQ 467 P+ Sbjct: 146 PE 147
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 25.0 bits (54), Expect = 0.050 Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 2/42 (4%) Query: 13 LEIKQLIIDSLNLEGLTPDDIDSQAPLFGDGLGLDSIDALEL 54 + + L TP+DI Q L GLDS+ + L Sbjct: 230 FTCENIRKQIAELLQETPEDITDQEDLL--DRGLDSVRIMTL 269
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 36.0 bits (83), Expect = 6e-04 Identities = 25/147 (17%), Positives = 58/147 (39%), Gaps = 17/147 (11%) Query: 634 LLLVAIALVGGLLWARF-GWRKGGRILLISGFSLGSGLALLAACGQPLTLFGVLAMSLIF 692 L+ ++ +V L A + W ++L+ + L Q ++ ++ + Sbjct: 875 LVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTI 934 Query: 693 GIG-------IDYSLFFAYSGGDPLRQ------RSTMFAILLANLTTQLSFGLLALSHTS 739 G+ ++++ G + + R + IL+ +L L LA+S+ + Sbjct: 935 GLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGA 994 Query: 740 ---AIAGFGLVLSGGIFTAFLLSPLVL 763 A G+ + GG+ +A LL+ + Sbjct: 995 GSGAQNAVGIGVMGGMVSATLLAIFFV 1021
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 107 bits (268), Expect = 3e-30 Identities = 72/248 (29%), Positives = 117/248 (47%), Gaps = 15/248 (6%) Query: 5 VLVTGASKGIGRAIALKLAADGFSIVVHYHSDRAGAEATLASLQAAGGQGRLLQFDIADR 64 +TGA++GIG A+A LA+ G + + + E ++SL+A D+ D Sbjct: 11 AFITGAAQGIGEAVARTLASQG-AHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDS 69 Query: 65 QGCRVQLESDMAEHGAYYGVVCNAGIIRDGAFPALTDEEWDGVLHTNLDGFYNLLKPCIM 124 E G +V AG++R G +L+DEEW+ N G +N + + Sbjct: 70 AAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRS-VS 128 Query: 125 PMIGLRRGGRIVTISSVSGLMGNRGQVNYSAAKAGIMGATKALALELAKRKITVNCVAPG 184 + RR G IVT+ S + Y+++KA + TK L LELA+ I N V+PG Sbjct: 129 KYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPG 188 Query: 185 LIDTGM-----VDEEVKAEAMK--------LIPLKRMGQADEVAGLVSYLMSDIAGYVTR 231 +T M DE + +K IPLK++ + ++A V +L+S AG++T Sbjct: 189 STETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHITM 248 Query: 232 QVISINGG 239 + ++GG Sbjct: 249 HNLCVDGG 256
>PF02370#M protein repeat Length = 168 Score = 27.8 bits (61), Expect = 0.044 Identities = 11/49 (22%), Positives = 25/49 (51%) Query: 275 QNDRSQHKNKDQCMKQLKAKLYELEIQKQNAEKQALEETKSDIGWGSQI 323 + + + + +++ +Q + K Y+ + +K E+Q LE K + QI Sbjct: 79 KEKQERPERREKFERQHQDKHYQEQQKKHQQEQQQLEAEKQKLAKEKQI 127
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 29.4 bits (66), Expect = 0.022 Identities = 8/29 (27%), Positives = 14/29 (48%) Query: 205 DITPQPIGVVTLYPGISAEVIANILQQPV 233 I P + V YPG A+ + + + Q + Sbjct: 37 TIAPPAVSVSANYPGADAQTVQDTVTQVI 65
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 41.7 bits (98), Expect = 8e-06 Identities = 38/168 (22%), Positives = 65/168 (38%), Gaps = 18/168 (10%) Query: 1 MLEIKQKLATLLAQLNEGLVERDEAMK--LALLSLLAGEN--ILLVGPPGTAKSLISRQV 56 + + +Q LV R AM+ +L+ L + +++ G GT K L++R + Sbjct: 121 EPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARAL 180 Query: 57 AKALKDDDKEGVSHFEYLLTKFSTPEEIFG-----PLSISKLKEDRFERNTAGYLPSVQV 111 K + V+ + + E+FG RFE+ G L Sbjct: 181 HDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTL----- 235 Query: 112 AFLDEIFKASSSILNALLTILNERIYH--NGAAVQKVPLRSLIAASNE 157 FLDEI LL +L + Y G + +R ++AA+N+ Sbjct: 236 -FLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVR-IVAATNK 281
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 28.6 bits (64), Expect = 0.048 Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 4/91 (4%) Query: 372 RLSLLCTLILGTLVLLAALQPPEMIIWLNLL--AFGGLQAVFLWPLVLGLYWS--RANGP 427 R LC + L + LA P+ + + L G + L G + RA+ Sbjct: 2 RYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADER 61 Query: 428 GALASMVCGILCYAILSQWEIKPAGLHAIVP 458 + S +LC A+L++ + L + Sbjct: 62 FPMMSTFKVVLCGAVLARVDAGDEQLERKIH 92
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 27.5 bits (61), Expect = 0.021 Identities = 7/30 (23%), Positives = 17/30 (56%) Query: 122 IESDKAGVIKAILVENGQAVEFDEPLFIIE 151 I+ + ++K I+V+ G++V + L + Sbjct: 99 IKPIENSIVKEIIVKEGESVRKGDVLLKLT 128
>PF06580#Sensor histidine kinase Length = 349 Score = 39.8 bits (93), Expect = 2e-05 Identities = 16/102 (15%), Positives = 39/102 (38%), Gaps = 21/102 (20%) Query: 379 LIDNALRY----TQAQGEIAVEARQEGHRVRVDIRDNGPGIPTAALSRLCERFFRVNPQQ 434 L++N +++ G+I ++ ++ V +++ + G Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLAL---------------KNT 307 Query: 435 GDGVGLGMAIV-SRIAQLHCADLDIH-NRPEGGLEVSVLLPA 474 + G G+ V R+ L+ + I + +G + VL+P Sbjct: 308 KESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLIPG 349
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 83.0 bits (205), Expect = 1e-20 Identities = 31/124 (25%), Positives = 61/124 (49%), Gaps = 1/124 (0%) Query: 2 RILLVEDDVMLGDGMVDALRSSGYTVDWLQQGLPALSVLKSEEFAALILDLNLPDIDGIS 61 IL+ +DD + + AL +GY V + + + ++ D+ +PD + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 LLRKLRREGQTLPVLILTARDALDDRVLGLDAGSDDYMVKPFALQELNARL-RALVRRSK 120 LL ++++ LPVL+++A++ + + G+ DY+ KPF L EL + RAL + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 121 GQAQ 124 ++ Sbjct: 125 RPSK 128
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 81.6 bits (201), Expect = 2e-20 Identities = 54/200 (27%), Positives = 90/200 (45%), Gaps = 4/200 (2%) Query: 3 LEGKLVLLTGASGGIGEALAQELAAQGAHLLLHGRRASALERLRKELPHPERHQTVI-AD 61 +EGK+ +TGA+ GIGEA+A+ LA+QGAH+ LE++ L RH AD Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 62 LGSPQERAKLLQHPALD-EGLDVLINNAGCNQFAWLEDQSSEQVERQLLLNVEAPIQLTR 120 + ++ + +D+L+N AG + + S E+ E +N +R Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 121 MLLP--RLRKPAVIMNVGSSFGAIGYAGYSVYCASKFALRGFSEALGRELEGTGIQVLHF 178 + R+ I+ VGS+ + + Y +SK A F++ LG EL I+ Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 179 APRATRTRLNSEAAYEMNAE 198 +P +T T + + N Sbjct: 186 SPGSTETDMQWSLWADENGA 205
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 49.2 bits (117), Expect = 2e-09 Identities = 35/200 (17%), Positives = 59/200 (29%), Gaps = 18/200 (9%) Query: 23 RAALAEATLTLLLKGGYGAATVDAVAKQAGVAKKTLYRFAANRDDLVAQAVRSWTDAFQP 82 R + + L L + G + ++ +AK AGV + +Y ++ DL ++ Sbjct: 13 RQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGE 72 Query: 83 AFEQDAAHPGALGEMLEQGLQAIASQVLSAQAVGMFRLLQHEFAGRDALLAAYQENGIAR 142 + L+ I VL + R L E Sbjct: 73 LELEYQ---AKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQA 129 Query: 143 GRATLAAWLQRQQQLGWLRELDTAQTSDLLLAMTMAEPLRQMALG---------LLAPGS 193 R R +Q L + +L A M + G L AP S Sbjct: 130 QRNLCLESYDRIEQT-----LKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQS 184 Query: 194 DIRARIAAA-VALVLPGLVR 212 + A VA++L + Sbjct: 185 FDLKKEARDYVAILLEMYLL 204
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 31.2 bits (70), Expect = 0.017 Identities = 39/243 (16%), Positives = 77/243 (31%), Gaps = 20/243 (8%) Query: 348 QDISNSSGQLNQQAKSSHNMAEKSSQGLARQQNEISQIATAVHEMSATAVEVASNAEQTA 407 QD + ++ Q + AK KS+ Q NE++Q + E T + + E+ Sbjct: 1056 QDATETTAQNREVAK-----EAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEE 1110 Query: 408 DA---ARSSSSSCEHGKQVIARNQRSITDLATQVKQASGIIQELEKNAQEINTILSTIQG 464 A + + QV + ++S T K Q + + Sbjct: 1111 KAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQ 1170 Query: 465 IAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLSQRTHSSTVEIRSMIETLQR---N 521 A++T+ + V + T +T + E+ + Sbjct: 1171 PAKETS--------SNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNR 1222 Query: 522 TQGAVSTMHEGQLLAQNSVEDANDATQALEQITASINQISD-MATQISSAAEEQRAVTDE 580 + +V ++ A S D + T + +SD A A +AV+ Sbjct: 1223 HRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTNAVLSDARAKAQFVALNVGKAVSQH 1282 Query: 581 VSR 583 +S+ Sbjct: 1283 ISQ 1285
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 50.8 bits (121), Expect = 2e-08 Identities = 48/363 (13%), Positives = 109/363 (30%), Gaps = 43/363 (11%) Query: 27 QVEELLQSVPKTDTPENQKLRESYQQAL----QFAREAQRYREQGKAYQQILIDYPKESA 82 E+ ++ T +K++E + + KA + + +E + Sbjct: 36 NTNEVSAVATRSQTDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELS 95 Query: 83 RLKESLHNYQPQPRPALSSLKEEALRQAIGLSSNRQLNLRKERQGVMDSLNQLESTGQEY 142 KE L S ++E R+A + + LE+ Sbjct: 96 NAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGA--MNFSTADSAKIKTLEAEKAAL 153 Query: 143 HLRVDELRKQLQQTRTLLDRLSFSSESDRLQDAQQLVTRLKEQSLSDRIQMLELEQLSAQ 202 R +L K L+ S ++ L+ + + ++ L ++ + Sbjct: 154 AARKADLEKALEGAMNFSTADS--AKIKTLEAEKAALEA-RQAELEKALEGAMNFSTADS 210 Query: 203 QRNDLGKLRLQELNLAITDEDEWQTSLLNQQNQLRRDKTEQALAESERLRKQLTSDMPLL 262 + + L D ++ + + E + L + L Sbjct: 211 AKIKTLEAEKAALAARKADLEK-----ALEGAMNFSTADSAKIKTLEAEKAALEARQAEL 265 Query: 263 LEQQQQNQALSIQLGALEDQIERVQDEQRVIDKNLSSLNDLVNSVREQLEWLQISNAYGE 322 + + A +I+ ++ E+ ++ + L Q+ NA + Sbjct: 266 EKALEGAMN---FSTADSAKIKTLEAEKAALEAEKADLEHQ----------SQVLNANRQ 312 Query: 323 NLRSKLSDLPAYFPLDKLESAIVNARMAKYQYETEQDALKDPRQMRDQLLATDEVALDRA 382 +LR L +R AK Q E E L++ ++ + + LD + Sbjct: 313 SLRRDLDA----------------SREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDAS 356 Query: 383 QQA 385 ++A Sbjct: 357 REA 359
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 35.5 bits (82), Expect = 3e-04 Identities = 38/165 (23%), Positives = 62/165 (37%), Gaps = 50/165 (30%) Query: 182 AVLACLPELQEWDKPVG--VIDIGASAMTFAALVKGEVIYSRLQNFGGDQYSQALASF-- 237 A+ A LP + G V+DIG A + V+YS GGD++ +A+ ++ Sbjct: 148 AIGAGLPV----SEATGSMVVDIGGGTTEVAVISLNGVVYSSSVRIGGDRFDEAIINYVR 203 Query: 238 --YNLSLDD--AEQAKLQ-GKLPVDHE--------------------------LDVLLPH 266 Y + + AE+ K + G E L+ L Sbjct: 204 RNYGSLIGEATAERIKHEIGSAYPGDEVREIEVRGRNLAEGVPRGFTLNSNEILEALQEP 263 Query: 267 MNALLQQVRRNVQLFCSSSGHRELSR------LVLTGGGSLLPGL 305 + ++ V ++ C EL+ +VLTGGG+LL L Sbjct: 264 LTGIVSAVMVALEQ-CPP----ELASDISERGMVLTGGGALLRNL 303
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 246 bits (629), Expect = 6e-74 Identities = 100/409 (24%), Positives = 186/409 (45%), Gaps = 44/409 (10%) Query: 358 VPWEQALDIILKVRGLDKRLDNNILLVAPAEEIAAREKQQL-------ESRNQVADLA-P 409 + W A D++ V L+K + L + + A E+ SR ++ + Sbjct: 199 LSWASAADVVKLVTELNKDTSKSALPGSMVANVVADERTNAVLVSGEPNSRQRIIAMIKQ 258 Query: 410 LYTE--------YLQINYAKASEVAALLSSESTKLLSSKGA------------VSVDERT 449 L + + + YAKAS++ +L+ S+ + S K A + +T Sbjct: 259 LDRQQATQGNTKVIYLKYAKASDLVEVLTGISSTMQSEKQAAKPVAALDKNIIIKAHGQT 318 Query: 450 NVLVVKDTADVISNIKRMLDILDIPVKQVVIEARMVTIDDGFDEALGVRWGVTKNDGHGN 509 N L+V DV+++++R++ LDI QV++EA + + D LG++W Sbjct: 319 NALIVTAAPDVMNDLERVIAQLDIRRPQVLVEAIIAEVQDADGLNLGIQWA--------- 369 Query: 510 STSGTIEGNDSSGNNNGGSTITRPGVDDRLNVNLPVTNAAGTLAFQVARLADGTLLDLEL 569 + + + +SG + + V+ + +A + A G + L Sbjct: 370 NKNAGMTQFTNSGLPISTAIAGANQYNKDGTVSSSLASALSSFNGIAAGFYQGNW-AMLL 428 Query: 570 SALEKESKAEIIASPRVTTANQKPALIEQGTEIPYVESSSSG-----ATSVTFKKAVLSL 624 +AL +K +I+A+P + T + A G E+P + S + +V K + L Sbjct: 429 TALSSSTKNDILATPSIVTLDNMEATFNVGQEVPVLTGSQTTSGDNIFNTVERKTVGIKL 488 Query: 625 KVTPQITPDNRVILDLTVTQDTKGETVPTGTGD-AVSINAQSITTQVLVNNGETLVLGGI 683 KV PQI + V+L++ + + + + D + N +++ VLV +GET+V+GG+ Sbjct: 489 KVKPQINEGDSVLLEIEQEVSSVADAASSTSSDLGATFNTRTVNNAVLVGSGETVVVGGL 548 Query: 684 YQQTIKSDVSKVPLLGDIPGLGVLFRKTTSENKKRELLIFVTPKIVTDA 732 +++ KVPLLGDIP +G LFR T+ + KR L++F+ P ++ D Sbjct: 549 LDKSVSDTADKVPLLGDIPVIGALFRSTSKKVSKRNLMLFIRPTVIRDR 597 Score = 55.7 bits (134), Expect = 5e-10 Identities = 36/172 (20%), Positives = 74/172 (43%), Gaps = 8/172 (4%) Query: 318 SLNFQDIPVRTVLQLIADFNNLNLVTTDSVSGNITLR-LDGVPWEQALDI---ILKVRGL 373 S +F+ ++ + ++ N ++ SV G IT+R D + EQ +L V G Sbjct: 31 SASFKGTDIQEFINTVSKNLNKTVIIDPSVRGTITVRSYDMLNEEQYYQFFLSVLDVYGF 90 Query: 374 DK-RLDNNILLVAPAEEIAAREKQQLESRNQVADLAPLYTEYLQINYAKASEVAALLSSE 432 ++N +L V +++ A + S + T + + A ++A LL Sbjct: 91 AVINMNNGVLKVVRSKD-AKTAAVPVASDAAPGIGDEVVTRVVPLTNVAARDLAPLLRQL 149 Query: 433 STKLLSSKGAVSVDERTNVLVVKDTADVISNIKRMLDILDIPVKQVVIEARM 484 + + G+V E +NVL++ A VI + +++ +D + V+ + Sbjct: 150 NDN--AGVGSVVHYEPSNVLLMTGRAAVIKRLLTIVERVDNAGDRSVVTVPL 199
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 31.7 bits (72), Expect = 0.001 Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 16/87 (18%) Query: 36 DHEIERRSGADIGWVFDVEGEEGFR----------IREEKVIGDLSEQQGIVLATGGGAI 85 D E +R + GW+ + G+R E + I L E+ IV+A+GGG + Sbjct: 138 DEETAKRLAREKGWIVKEDSGRGWRRVVPSPDPKGHVEAETIKKLVERGVIVIASGGGGV 197 Query: 86 KSRETRNKLSARGIVVYLETTIEKQLA 112 ++ +E I+K LA Sbjct: 198 PVILEDGEIKG------VEAVIDKDLA 218
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 30.3 bits (68), Expect = 0.015 Identities = 12/67 (17%), Positives = 15/67 (22%) Query: 378 ADSQAAATQVAPAEPAVTPNATAQTAQPANTAKAQPTPAASKPVAKPVAVEPVAGPAPKV 437 + EP P A K +P P K V +P P Sbjct: 68 PPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESRPAS 127 Query: 438 ALTPAAT 444 A Sbjct: 128 PFENTAP 134
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 36.3 bits (84), Expect = 2e-04 Identities = 33/148 (22%), Positives = 61/148 (41%), Gaps = 10/148 (6%) Query: 240 ITRELGLEEKLA---GVLMGTAAALEIPFMLLAGHYTQRFGKRPMMLLAVLAGVGFYVGL 296 + R+L + G+L+ A ++ + G + RFG+RP++L+++ G V Sbjct: 31 LLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLA---GAAVDY 87 Query: 297 VTLSSQHALIALQLLNAIFIGIVAGIG---MSYFQDLMPGRAGVATTLFANSIRTGSIMA 353 +++ L L + I GI G +Y D+ G F ++ ++A Sbjct: 88 AIMATAPFLWVL-YIGRIVAGITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVA 146 Query: 354 GAIAGTVAEIWSFHGVFMVAMGLALLAL 381 G + G + +S H F A L L Sbjct: 147 GPVLGGLMGGFSPHAPFFAAAALNGLNF 174 Score = 29.4 bits (66), Expect = 0.026 Identities = 37/186 (19%), Positives = 65/186 (34%), Gaps = 7/186 (3%) Query: 3 LLTAARNRTDPVSLSFLAVTFMTGVAVALQVPTL-SLFLAEEVQVRPFLVGLFYTVNAVI 61 L + R ++ L F V L +F + +G+ ++ Sbjct: 199 PLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGIL 258 Query: 62 GILISQWLGHRSDNKGDRKRLILRCCFAGVVLSLLFAWNRQYWLLVSLGVLLASLAATAS 121 L + + +R ++ A +L A+ + W+ + VLLAS Sbjct: 259 HSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLAS-GGIGM 317 Query: 122 PQLFALAREYADSRNKRADMFSSVLRAQFSLAWVIGPPIA---FALAIGYGFEVMYLASA 178 P L A+ D + L A SL ++GP + +A +I ++A A Sbjct: 318 PALQAMLSRQVDEERQGQ--LQGSLAALTSLTSIVGPLLFTAIYAASITTWNGWAWIAGA 375 Query: 179 VAYLLC 184 YLLC Sbjct: 376 ALYLLC 381
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 75.1 bits (184), Expect = 3e-18 Identities = 52/206 (25%), Positives = 89/206 (43%), Gaps = 8/206 (3%) Query: 11 LKDKVILVTGAGDGIGREAALTYAAHGATVILLGRTSAKLEAVYDQIEAAGHPLPAIVPV 70 ++ K+ +TGA GIG A T A+ GA + + KLE V ++A P Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEAR-HAEAFPA 64 Query: 71 DLKGATKSHYLGMAETFAQQFGRLDGVLFNAGLLGTLSPFEHIQEQEWDEVMQVNVKSEF 130 D++ + + ++ G +D ++ AG+L + ++EW+ VN F Sbjct: 65 DVRDSAAIDE--ITARIEREMGPIDILVNVAGVL-RPGLIHSLSDEEWEATFSVNSTGVF 121 Query: 131 LLTQALLPLIRQTAKEQGDASIVYTSSSVGRNGRAYWGTYAISKFAIEGMMEVLADELEN 190 ++++ + + G SIV S+ R YA SK A + L EL Sbjct: 122 NASRSVSKYMM--DRRSG--SIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAE 177 Query: 191 TGVRVNTLNPGGTRTKMRASAFPAED 216 +R N ++PG T T M+ S + E+ Sbjct: 178 YNIRCNIVSPGSTETDMQWSLWADEN 203
>FLAGELLIN#Flagellin signature. Length = 507 Score = 37.7 bits (87), Expect = 1e-04 Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 10/95 (10%) Query: 272 DAQTQQMAAAMTQMASTAHEIARNIQDSNGQVSEARSRCQHTDKQLAQTE---QRIEQLA 328 DA Q +A T + +RN D S Q T+ L + QR+ +L+ Sbjct: 43 DAAGQAIANRFTSNIKGLTQASRNAND-------GISIAQTTEGALNEINNNLQRVRELS 95 Query: 329 RQAELAFNSAVELASESERIGSVMGEIQGIADQTN 363 QA NS +L S + I + EI +++QT Sbjct: 96 VQATNGTNSDSDLKSIQDEIQQRLEEIDRVSNQTQ 130
>PF05272#Virulence-associated E family protein Length = 892 Score = 31.2 bits (70), Expect = 0.004 Identities = 12/32 (37%), Positives = 19/32 (59%) Query: 33 LRGANGVGKTTLLKILAGLLTPTRGHTNLPSG 64 L G G+GK+TL+ L GL + H ++ +G Sbjct: 601 LEGTGGIGKSTLINTLVGLDFFSDTHFDIGTG 632
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 441 bits (1136), Expect = e-154 Identities = 163/480 (33%), Positives = 245/480 (51%), Gaps = 42/480 (8%) Query: 9 SALSLLIVDDEPGMRSFLAKALARRFAQIETAASVEEAEALRCRLHFDLIIADIRLPGRS 68 + ++L+ DD+ +R+ L +AL+R + ++ DL++ D+ +P + Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 69 GIEWHEAIDPATRRSDIIFMTGFGDMETALKALRLGASDFILKPFNLDQMVQAVDRVIER 128 + I A ++ M+ TA+KA GA D++ KPF+L +++ + R + Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 129 RQMERENLLLRREVSKLFPPTLIGDSAKTRELKTLIARVASSNAAVLVEGESGTGKELVA 188 + + E L+G SA +E+ ++AR+ ++ +++ GESGTGKELVA Sbjct: 122 PKRRPS----KLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVA 177 Query: 189 RALHQLSGRM-GAFVPLNCASIAPELLESELFGHVQGAFTGARKGRDGLFRVAHQGTLFL 247 RALH R G FV +N A+I +L+ESELFGH +GAFTGA+ G F A GTLFL Sbjct: 178 RALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFL 237 Query: 248 DEIGEMPLAMQASLLRALEQKAIRPVGAERELSVDVRIVAATNRNLKAEVEAGRFREDLF 307 DEIG+MP+ Q LLR L+Q VG + DVRIVAATN++LK + G FREDL+ Sbjct: 238 DEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLY 297 Query: 308 YRLNVVALPVAPLRERIDDIPALVHHFTRQLTAEMGMGALHWTHEDVVAMQAYPWPGNVR 367 YRLNVV L + PLR+R +DIP LV HF +Q + G+ + E + M+A+PWPGNVR Sbjct: 298 YRLNVVPLRLPPLRDRAEDIPDLVRHFVQQA-EKEGLDVKRFDQEALELMKAHPWPGNVR 356 Query: 368 ELRNLIERCLLL------------------------------------GKPPAEYWQSAK 391 EL NL+ R L + E + Sbjct: 357 ELENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYF 416 Query: 392 PAESARGEEGYPLEWALAEVEKAHILQVVASHDGNKSAASRVLGVARKTLERKFKEWAIE 451 + + LAE+E IL + + GN+ A+ +LG+ R TL +K +E + Sbjct: 417 ASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGVS 476
>PF01540#Adhesin lipoprotein Length = 475 Score = 32.8 bits (74), Expect = 0.005 Identities = 38/205 (18%), Positives = 88/205 (42%), Gaps = 9/205 (4%) Query: 375 ELAQLGRQFDAMLDQQAAHQQQLARSADELEQKVAERTQSLEQKTAELEHHIHMLTQARQ 434 ELA++ + D L ++ ++ A+ +L +K+ ++ +LE + + ++ Sbjct: 226 ELAEIKAEDDKKLAEENQKIKEGAKELLKLSEKIQSFADTIALTITKLERKFQIDEKFKK 285 Query: 435 QLLISEKLAALGELCAGVAHEINNPLAVILGNVELMKLELGEAAEPVSEELALVLAQIER 494 QL+ + EL + E+ V + + EL E + L ++++ E Sbjct: 286 QLI------STIELLNKKSVEVKTFATVNTIKKDFLLSELESFKEFNTSWLEKIVSEWEE 339 Query: 495 I-RAITRSLLQYSRPGDYETAPVWQHLTPIIEESLTLVRSALR-QQQVNL-VADLRAQQP 551 + +A ++ L + D + A Q + +EE + A + VN +A+L + Sbjct: 340 VKKAWSKELAEIKAEDDKKLAEENQKIKNGVEELKKINNEAFELSKTVNKTIAELEKKFK 399 Query: 552 IEADRQQLLQVLINLLVNASHALGE 576 I+ ++ L+ + L++ S + E Sbjct: 400 IDVSFKEQLKNFADDLLDKSRQIDE 424
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 37.6 bits (87), Expect = 5e-06 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 11/66 (16%) Query: 64 ALVDDYLAALFVRPDRQGRGVGHALLQE----AKSKGARLHARVFVE--NDLAVRFYRRH 117 AL++D + V D + +GVG ALL + AK + + N A FY +H Sbjct: 90 ALIED----IAVAKDYRKKGVGTALLHKAIEWAKENHF-CGLMLETQDINISACHFYAKH 144 Query: 118 GFVIEG 123 F+I Sbjct: 145 HFIIGA 150
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 38.9 bits (90), Expect = 1e-04 Identities = 56/312 (17%), Positives = 115/312 (36%), Gaps = 13/312 (4%) Query: 210 RAREEQQKLAAIGQRLGDVALMDEATREQWVSQQVSLATSLKH-EQQQQQLMQDLRDLNG 268 + + L A L E E ++ + + +K E ++ L +L Sbjct: 138 ADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEK 197 Query: 269 RIAAQLQACQEGEAALAAAEAAHGAAAPEREEFARAEQAQVARADH---------DELAR 319 + + A + EA A A + + +A + + + E A Sbjct: 198 ALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAA 257 Query: 320 LTLEVQQQEKALAELGPELGKLEEQTQQSALTEQQLLAKKIAAEREWGALQPELKRAQEL 379 L + EKAL + + + L A+K E + L + + Sbjct: 258 LEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRD 317 Query: 380 DTRIREKQQQLQKIQQEGAQEREVQLTLEQGWRQQRQQVEQLKAQHQQWGAWLEEHKELA 439 RE ++QL+ Q+ ++ ++ Q R+ + K Q + LEE +++ Sbjct: 318 LDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKIS 377 Query: 440 PVARQWQPLLTAMQDWAEDADRLQQLLTLREHKLRALRQLQHQLEQGQQERDYWQRE-QE 498 +R Q L + E ++++ L KL AL +L +LE+ ++ + + E Q Sbjct: 378 EASR--QSLRRDLDASREAKKQVEKALEEANSKLAALEKLNKELEESKKLTEKEKAELQA 435 Query: 499 RLQQQQHELQEQ 510 +L+ + L+E+ Sbjct: 436 KLEAEAKALKEK 447 Score = 38.1 bits (88), Expect = 2e-04 Identities = 65/401 (16%), Positives = 125/401 (31%), Gaps = 27/401 (6%) Query: 679 ELETRAEQLTQRWQQLGGAELLGHPLPLRQRPIEWNELMSTLLGRGQSLEQGLARSQQQL 738 +L + L +L EL LR+ +E S + + + Sbjct: 75 DLSFNNKALKDHNDELTE-ELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAM 133 Query: 739 REAQQGQQQLQAVRQQLSQLTSQHQQFEQQWQEADRQRIALEGEVKAMGEQETTLRQRLE 798 + +++ + + + L ++ E+ + A A ++K + ++ L R Sbjct: 134 NFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQA 193 Query: 799 QGGSRLDEQMGGQPWRQWLGSQQWHEWQRACEAWLHGQSEWERLTGEIASLTPALSAQEA 858 + L+ M E + E + + + EA Sbjct: 194 ELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEA 253 Query: 859 RLQTQRELLHKLERDYKEHEQQRQGLVTSRATCLGGEEIAQVEIRWQQRLQQLASELETM 918 +LE+ + T E A +E Q Sbjct: 254 EKAALEARQAELEKALEGAMNFSTADSAKIKTLEA--EKAALEAEKADLEHQSQVLNANR 311 Query: 919 QGAARAL---RERQTELKTRLSHLEQEKQVSSRRRREVLGRWAAHASSLGIAEYDLRRL- 974 Q R L RE + +L+ LE++ ++S R+ + A + E + ++L Sbjct: 312 QSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLE 371 Query: 975 ---------LAMSPDELKARRAALQALEDARAEARTRLTERQRALALEESKRDRYREHHP 1025 +L A R A + +E A EA ++L ++ E + + Sbjct: 372 EQNKISEASRQSLRRDLDASREAKKQVEKALEEANSKLAALEKLNKELEESKKLTEKEKA 431 Query: 1026 ELAALAPQELDSRLTALEAHCRALDEQLFQCKSTLAQAEAA 1066 EL A LEA +AL E+L + LA+ A Sbjct: 432 ELQA-----------KLEAEAKALKEKLAKQAEELAKLRAG 461 Score = 37.0 bits (85), Expect = 5e-04 Identities = 43/314 (13%), Positives = 87/314 (27%), Gaps = 7/314 (2%) Query: 135 TDVASGQVFSGSKRELQDRIDELVGLSWEQFRRAVILPQGEFAAFLKSSADERSALLERM 194 T+ S L+ + E + + +F + + + L Sbjct: 37 TNEVSAVATRSQTDTLEKVQERADKFEIE---NNTLKLKNSDLSFNNKALKDHNDELTEE 93 Query: 195 TGTELYSAISIQTH--ERAREEQQKLAAIGQRLGDVALMDEATREQWVSQQVSLATSLKH 252 E+A + Q+ A + + + A Sbjct: 94 LSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAAL 153 Query: 253 EQQQQQLMQDLRDLNGRIAAQLQACQEGEAALAAAEAAHGAAAPEREEFARAEQAQVARA 312 ++ L + L A + EA AA EA E A A+ Sbjct: 154 AARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKI 213 Query: 313 DHDELARLTLEVQQQ--EKALAELGPELGKLEEQTQQSALTEQQLLAKKIAAEREWGALQ 370 E + L ++ EKAL + + + L A++ E+ Sbjct: 214 KTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAM 273 Query: 371 PELKRAQELDTRIREKQQQLQKIQQEGAQEREVQLTLEQGWRQQRQQVEQLKAQHQQWGA 430 + ++ L+ + + + +V Q R+ + K Q + Sbjct: 274 NFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQ 333 Query: 431 WLEEHKELAPVARQ 444 LEE +++ +RQ Sbjct: 334 KLEEQNKISEASRQ 347 Score = 33.1 bits (75), Expect = 0.008 Identities = 51/349 (14%), Positives = 111/349 (31%), Gaps = 10/349 (2%) Query: 460 DRLQQLLTLREHKLRALRQLQHQLEQGQQERDYWQREQERLQQQQHELQEQQWEGRLVKA 519 + L + +L +L +++ + + EL+ ++ + Sbjct: 71 LKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADL----E 126 Query: 520 QEQWQGQTEQLGQLRQLLELADYGHNHGEQHGRLQQEIAQLEQALGKLAILGDELTPARE 579 + ++ L + L++ + + L + Sbjct: 127 KALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKA 186 Query: 580 RLALQRDEARHALEQSRAIASFEQHRHILRDGEPCPLCGAEEHPYHQSQPQVAGILGQLA 639 L ++ E ALE + S I A + ++ + Sbjct: 187 ALEARQAELEKALEGAMN-FSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADS 245 Query: 640 ERVRSLELEWERLNHQYIQCESERQELARQLAVRQQHLPELETRAEQLTQRWQQLGGAE- 698 ++++LE E L + + E + + LE L L Sbjct: 246 AKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQ 305 Query: 699 -LLGHPLPLRQRPIEWNELMSTLLGRGQSLEQGLARSQQQLREAQQGQQQLQAVRQQLSQ 757 L + LR+ E L Q LE+ S+ + ++ L A R+ Q Sbjct: 306 VLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRR---DLDASREAKKQ 362 Query: 758 LTSQHQQFEQQWQEADRQRIALEGEVKAMGEQETTLRQRLEQGGSRLDE 806 L ++HQ+ E+Q + ++ R +L ++ A E + + + LE+ S+L Sbjct: 363 LEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQVEKALEEANSKLAA 411
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 755 bits (1950), Expect = 0.0 Identities = 278/571 (48%), Positives = 400/571 (70%), Gaps = 2/571 (0%) Query: 1 MISGILASPGIAFGKALLLKEDEIVINQGKIAAEQIDAEINRFLEARTKSAAQLEAIKEM 60 I+GI AS G+A KA + E + I K + + EI + A KS +L AIK+ Sbjct: 4 KITGIAASSGVAIAKAFIHLEPNVDIE--KTSITDVSTEIEKLTAALEKSKEELRAIKDQ 61 Query: 61 AGRTFGEEKEAIFEGHIMLLEDEELEGDIRSFIKDNKATADKAIYEVIEQYAKMMAELDD 120 + G +K IF H+++L+D EL I+ I++ + A+ A+ EV + + M +D+ Sbjct: 62 TEASMGADKAEIFAAHLLVLDDPELVDGIKGKIENEQMNAEYALKEVSDMFVSMFESMDN 121 Query: 121 PYLRERATDFRDIGTRLVKNVLGIAVVNLSTIDEEVILVAKDLTPSETAQINLKYVLGFV 180 Y++ERA D RD+ R++ +++G+ +L+TI EE +++A+DLTPS+TAQ+N ++V GF Sbjct: 122 EYMKERAADIRDVSKRVLGHLIGVETGSLATIAEETVIIAEDLTPSDTAQLNKQFVKGFA 181 Query: 181 TDIGGRTSHTSIMARSLELPAIVGTNDITERVKNGDVLVLDAINNQIIINPTAEQLNEAK 240 TDIGGRTSH++IM+RSLE+PA+VGT ++TE++++GD++++D I +I+NPT E++ + Sbjct: 182 TDIGGRTSHSAIMSRSLEIPAVVGTKEVTEKIQHGDMVIVDGIEGIVIVNPTEEEVKAYE 241 Query: 241 QFQAQFQAEKDELAKLKDLPAITLDGHQVEVCANIGTVKDTEGAIRNGAEGVGLYRTEFL 300 + +A F+ +K E AKL P+ T DG VE+ ANIGT KD +G + NG EG+GLYRTEFL Sbjct: 242 EKRAAFEKQKQEWAKLVGEPSTTKDGAHVELAANIGTPKDVDGVLANGGEGIGLYRTEFL 301 Query: 301 FMDRDALPTEDEQFKAYKEVAEAMPDQPIIVRTMDIGGDKELPYMNFPKEMNPFLGWRAV 360 +MDRD LPTE+EQF+AYKEV + M +P+++RT+DIGGDKEL Y+ PKE+NPFLG+RA+ Sbjct: 302 YMDRDQLPTEEEQFEAYKEVVQRMDGKPVVIRTLDIGGDKELSYLQLPKELNPFLGFRAI 361 Query: 361 RIFFDRADIMHAQLRAILRASAFGKLRIMFPMIISVEEFRSLKATVETLKAELRAEGKAF 420 R+ ++ DI QLRA+LRAS +G L++MFPMI ++EE R KA ++ K +L +EG Sbjct: 362 RLCLEKQDIFRTQLRALLRASTYGNLKVMFPMIATLEELRQAKAIMQEEKDKLLSEGVDV 421 Query: 421 DESIEVGIMIETPAAAVMAHHLAKEVDFFSIGTNDLTQYTLAVDRGNEMISAMYNPLSPS 480 +SIEVGIM+E P+ AV A+ AKEVDFFSIGTNDL QYT+A DR NE +S +Y P P+ Sbjct: 422 SDSIEVGIMVEIPSTAVAANLFAKEVDFFSIGTNDLIQYTMAADRMNERVSYLYQPYHPA 481 Query: 481 VLTLIKMVIDASHAEGKWTGMCGELAGDERATLLLLGMGLDEFSMSAISVPRIKKLIRNT 540 +L L+ MVI A+H+EGKW GMCGE+AGDE A LLLG+GLDEFSMSA S+ + + Sbjct: 482 ILRLVDMVIKAAHSEGKWVGMCGEMAGDEVAIPLLLGLGLDEFSMSATSILPARSQLLKL 541 Query: 541 NFEDVKAMADQALSFATAAEIEACVDNFIKQ 571 + E++K A +AL TA E+E V + Sbjct: 542 SKEELKPFAQKALMLDTAEEVEQLVKKTYLK 572
>OMPTIN#Omptin serine protease signature. Length = 317 Score = 29.6 bits (66), Expect = 0.020 Identities = 26/104 (25%), Positives = 34/104 (32%), Gaps = 23/104 (22%) Query: 109 LLATLNQRLS----EQKERHAGGNKWVGTGGSSPFGHGGF-------HPEGVRMGGEGQH 157 LL N RL Q+ R++ + GGS + P G R G Q Sbjct: 140 LLNEPNYRLGLMAGYQESRYS----FTARGGSYIYSSEEGFRDDIGSFPNGERAIGYKQR 195 Query: 158 GKAVKVWEARHYRNFSDDSPLGQRAIQLALRKLRRWVRKGNPDE 201 K + YR +D LG K WV + DE Sbjct: 196 FKMPYIGLTGSYRY--EDFELG------GTFKYSGWVESSDNDE 231
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 31.6 bits (72), Expect = 0.010 Identities = 13/24 (54%), Positives = 17/24 (70%) Query: 522 GSLEVGKLADMVVLSANPLKVKPE 545 GSLEVGK AD+V+ + VKP+ Sbjct: 424 GSLEVGKRADLVLWNPAFFGVKPD 447
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 29.4 bits (65), Expect = 0.043 Identities = 30/146 (20%), Positives = 57/146 (39%), Gaps = 9/146 (6%) Query: 216 QSASLSFEAFLAQQAELQAACSARLAQAERREKAAARSVQKVRE-QAARRASQGRR--ER 272 +A+ + + F + LQ + A E AAA ++ +A R+A + R Sbjct: 184 LTAAYNVKLFTEAISSLQIRMNTLTAAKASIEAAAANKAREQAAAEAKRKAEEQARQQAA 243 Query: 273 GSQAKIL-LDFKAEQAGKSLGKVLDRHQRGHSAQLEACAEAAAALAAVQPLVMQWPAGSE 331 A + + G+ L + +G ++ +A ++A A L V + P+ Sbjct: 244 IRAANTYAMPANGSVVATAAGRGLIQVAQGAASLAQAISDAIAVLGRV---LASAPSVMA 300 Query: 332 GKGAAQPLVITAARHRRWHDQQVDLV 357 A+ L ++ +W DQ D V Sbjct: 301 VGFAS--LTYSSRTAEQWQDQTPDSV 324
>STREPTOPAIN#Streptopain (C10) cysteine protease family signature. Length = 398 Score = 27.0 bits (59), Expect = 0.027 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 9/68 (13%) Query: 6 NKERHMKRIAILFGLLCGSVLLANPVFANDSAQLQCEAQAAAKKLAGAAKTSFVGKCVKD 65 NK++ R+ L L G +LANPVFA+ + A +K A + +F+ K Sbjct: 2 NKKKLGVRLLSLLAL--GGFVLANPVFADQNF-------ARNEKEAKDSAITFIQKSAAI 52 Query: 66 AAGAATGE 73 AGA + E Sbjct: 53 KAGARSAE 60
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 71.4 bits (175), Expect = 7e-15 Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 4/121 (3%) Query: 963 RLRVLVVDDNHANQVLLRQQLKHLGHEVSVRGNGAEALRAIQNQDFELIITDCQMPLMDG 1022 +LV DD+ A + +L Q L G++V + N A R I D +L++TD MP + Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 1023 FELTRRLRARGHTLPIWGFTAHATARERERCLAAGMDECLYKPI----GLARLRTALASL 1078 F+L R++ LP+ +A T + G + L KP + + ALA Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122 Query: 1079 E 1079 + Sbjct: 123 K 123
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 58.3 bits (141), Expect = 2e-11 Identities = 38/230 (16%), Positives = 80/230 (34%), Gaps = 37/230 (16%) Query: 93 LIAQNNLKTAEADLASRRAQLKIKQAQLKQNELSWRRQQQMFRQEASSRADLESAEALLA 152 L +N A +L ++QL+ ++++ + ++ Q+F+ E L + Sbjct: 255 LEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILD--KLRQTTDNIG 312 Query: 153 VTKAELQSAQAEVENAQIKVERTKTELGYNRIQAPMDGTVVSI-VTRQGQTLAASQTVPT 211 + EL + + + I+ AP+ V + V +G + ++ T Sbjct: 313 LLTLELAKNEERQQASVIR--------------APVSVKVQQLKVHTEGGVVTTAE---T 355 Query: 212 LLKLA-NLETMTVKAQISEADVTRVKAGMPVYFTLMGDPDTRYHGTLRTVEL-APTNINE 269 L+ + +T+ V A + D+ + G + P TRY + V+ I + Sbjct: 356 LMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIED 415 Query: 270 QATSTTTTSNAAVYYYALFDVP-------NPDHTLRVAMTTQVTIVLGER 312 Q + + + + N + L M I G R Sbjct: 416 QRL--------GLVFNVIISIEENCLSTGNKNIPLSSGMAVTAEIKTGMR 457 Score = 52.5 bits (126), Expect = 1e-09 Identities = 30/178 (16%), Positives = 70/178 (39%), Gaps = 14/178 (7%) Query: 4 TPQQRKIALLA-LVLLLAIGWLIWPSKTPEPVLTAQVTRQDVEQTVLASGVLQAIEQV-D 61 TP R+ L+A ++ + I VE A+G L + + Sbjct: 51 TPVSRRPRLVAYFIMGFLVIAFILSVLGQ------------VEIVATANGKLTHSGRSKE 98 Query: 62 VGAQVSGQVTYLAVEAGQKVKQGDLLAEIDPLIAQNNLKTAEADLASRRAQLKIKQAQLK 121 + + V + V+ G+ V++GD+L ++ L A+ + ++ L R + Q + Sbjct: 99 IKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSR 158 Query: 122 QNELSWRRQQQMFRQEASSRADLESAEALLAVTKAELQSAQAEVENAQIKVERTKTEL 179 EL+ + ++ + E L ++ K + + Q + ++ +++ + E Sbjct: 159 SIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAER 216
>OUTRSURFACE#Outer surface protein signature. Length = 273 Score = 26.4 bits (58), Expect = 0.047 Identities = 11/37 (29%), Positives = 20/37 (54%) Query: 42 SSKMRRKSLSLSEEERSAQGTLDAKAIISELITTLQH 78 S K+ K + ++E + +G L AK + E T L++ Sbjct: 111 SRKVSSKDKTSTDEMFNEKGELSAKTMTRENGTKLEY 147
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.0 bits (67), Expect = 0.006 Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 8/80 (10%) Query: 5 EQKVEAMEQVEAQPVEPTDVDSEVTAEQARIAELEAQLDAAQQASLEERERAIRAVAEME 64 +Q+ + +E+ E E T + EV E + Q + Q+ E +E E Sbjct: 1045 KQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKE-- 1102 Query: 65 NLRRRAAQDVEKAHKFALEK 84 VEK K +E Sbjct: 1103 ------TATVEKEEKAKVET 1116
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 134 bits (338), Expect = 1e-36 Identities = 78/387 (20%), Positives = 148/387 (38%), Gaps = 82/387 (21%) Query: 5 IGIDLGTTNSCVAILDGDHARVIENAEGDRTTPSIIAYADDGE------ILVGQPAKRQA 58 + IDLGT N+ + + ++ N PS++A D VG AK+ Sbjct: 13 LSIDLGTANTLIYVKGQG---IVLN------EPSVVAIRQDRAGSPKSVAAVGHDAKQML 63 Query: 59 ITNPKNTLFAIKRLIGRRFEDDEVQRDLEIMPYAIAKADNGDAWVEVKGKKMAPPQISAE 118 P N + AI+ + K +A ++ + Sbjct: 64 GRTPGN-IAAIRPM---------------------------------KDGVIADFFVTEK 89 Query: 119 VLKK-MKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLDVKRIINEPTAAAF 177 +L+ +K+ + P ++ VP +R+A +++ + AG +I EP AAA Sbjct: 90 MLQHFIKQVHSNSFMRPSPRVLVCVPVGATQVERRAIRESAQGAGAREVFLIEEPMAAAI 149 Query: 178 AYGVNKVKGERKVAVYDLGGGTFDISIIEIDEVEGETTFEVLATNGNTHLGGEDFDNRVI 237 G+ V V D+GGGT ++++I ++ V + + +GG+ FD +I Sbjct: 150 GAGL-PVSEATGSMVVDIGGGTTEVAVISLNGV---------VYSSSVRIGGDRFDEAII 199 Query: 238 NYLVEEFKREQGIDLRKDQLALQRLKDAAEKAKIELSSA----QQTDVNLPYITADATGP 293 NY+ + G + AE+ K E+ SA + ++ + P Sbjct: 200 NYVRRNYGSLIG-------------EATAERIKHEIGSAYPGDEVREIEVRGRNLAEGVP 246 Query: 294 KHMNIKVTRAKLESLVEDMVKDSLEPVRVALKDSG--LAVGEIDD-VILVGGQTRMPMVQ 350 + + + LE+L ++ + + V VAL+ LA + ++L GG + + Sbjct: 247 RGFTLN-SNEILEAL-QEPLTGIVSAVMVALEQCPPELASDISERGMVLTGGGALLRNLD 304 Query: 351 KAVADFFGKEPRKDVNPDEAVAMGAAI 377 + + + G +P VA G Sbjct: 305 RLLMEETGIPVVVAEDPLTCVARGGGK 331
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 73.7 bits (181), Expect = 3e-16 Identities = 67/364 (18%), Positives = 129/364 (35%), Gaps = 19/364 (5%) Query: 16 ALGSVFSLRMLGMFMVLPVLTTY--GMSLAGASEALIGLAIGIYGMTQALFQIPFGLLSD 73 L +V L +G+ +++PVL + + A G+ + +Y + Q G LSD Sbjct: 10 ILSTVA-LDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSD 68 Query: 74 KVGRKPLIVGGLLMFALGSVIAALTHSIWGVILGRALQG-SGAISAAVMALLSDLTREQN 132 + GR+P+++ L A+ I A +W + +GR + G +GA A A ++D+T Sbjct: 69 RFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADITDGDE 128 Query: 133 RTKAMAFIGVSFGITFAIAMVTGPLITHALG-LSGLFWLIALLALGGIAVTLWLVPTPSG 191 R + F+ FG MV GP++ +G S A AL G+ P Sbjct: 129 RARHFGFMSACFG----FGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPES 184 Query: 192 HLLNRESGMVKGGMRTVLTNPRLLKLNFGILCVHTLLMSSFVALPLLLESAGLPRDSQWQ 251 H R + L +M +P L W Sbjct: 185 HKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWD 244 Query: 252 AYLVTMLIA-------FVSVVPFIIYAEKRRKMKRVFQICVLVMLVAELVLWQSGLQLWG 304 A + + +A + A + + + + + L+ + + + W Sbjct: 245 ATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFAT--RGWM 302 Query: 305 LLAGLQIFFIGFNVMEALLPSLISKESPPGYKGTAMGIYSTSQFIGVAIGGSLGGLLYSL 364 + + + L +++S++ +G G + + +G L +Y+ Sbjct: 303 AFPIM-VLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAA 361 Query: 365 GGGT 368 T Sbjct: 362 SITT 365 Score = 39.4 bits (92), Expect = 2e-05 Identities = 28/144 (19%), Positives = 58/144 (40%), Gaps = 12/144 (8%) Query: 38 YGMSLAGASEALIGLAIGIYGMTQALFQI-PFGLLSDKVGRKPLIVGGLLMFALGSVIAA 96 +G IG+++ +G+ +L Q G ++ ++G + ++ G++ G ++ A Sbjct: 236 FGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLA 295 Query: 97 LTHSIWGVILGRALQGSGAI-SAAVMALLSDLTREQNRTKAMAFIGVSFGITFAIAMVTG 155 W L SG I A+ A+LS E+ + + G +T ++ + G Sbjct: 296 FATRGWMAFPIMVLLASGGIGMPALQAMLSRQVDEERQGQLQ---GSLAALT-SLTSIVG 351 Query: 156 PLI------THALGLSGLFWLIAL 173 PL+ +G W+ Sbjct: 352 PLLFTAIYAASITTWNGWAWIAGA 375
>SALSPVBPROT#Salmonella virulence plasmid 65kDa B protein signature. Length = 591 Score = 28.6 bits (63), Expect = 0.031 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 4/35 (11%) Query: 43 ARLGLISPLFLPPPAQVLQQFATLAGPQGFMDATL 77 A L LI+P FLP + L Q +GP G TL Sbjct: 10 ATLALITPPFLPKGGKALSQ----SGPDGLASITL 40
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1287 bits (3333), Expect = 0.0 Identities = 692/1032 (67%), Positives = 848/1032 (82%), Gaps = 2/1032 (0%) Query: 1 MARFFIDRPIFAWVIALVIMLAGSLAIIKLPVAQYPSIAPPAVGISASYPGASAKTVEDS 60 MA FFI RPIFAWV+A+++M+AG+LAI++LPVAQYP+IAPPAV +SA+YPGA A+TV+D+ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VTQIIEQNMTGLDHLLYMSSQSDSSGRVSVTLTFQPGTDPDIAQVQVQNKLQQAMSLLPQ 120 VTQ+IEQNM G+D+L+YMSS SDS+G V++TLTFQ GTDPDIAQVQVQNKLQ A LLPQ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 121 EVQQQGIRVQKTSSSFLMVAAFISKDGAMTNDDLADYVVANIKEPLSRLDGVGDITLFGS 180 EVQQQGI V+K+SSS+LMVA F+S + T DD++DYV +N+K+ LSRL+GVGD+ LFG+ Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 181 QYSMRVWLDPNKLNRVQMTPGDVQAAIKAQNTQVAFGKLGGTPAVSDQRFTATIMGQTRL 240 QY+MR+WLD + LN+ ++TP DV +K QN Q+A G+LGGTPA+ Q+ A+I+ QTR Sbjct: 181 QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240 Query: 241 STVEEFNDILLRVNQDGSKVRLKDVARVELAGESYDAEALYNGQSTAAVAIKLATGANAL 300 EEF + LRVN DGS VRLKDVARVEL GE+Y+ A NG+ A + IKLATGANAL Sbjct: 241 KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300 Query: 301 DTAEKVRGKLNELSTYFPANMEIVYPYDTTPFVKISIEEVVQTLVEAIFLVFCVMYLFLQ 360 DTA+ ++ KL EL +FP M+++YPYDTTPFV++SI EVV+TL EAI LVF VMYLFLQ Sbjct: 301 DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360 Query: 361 NFRATLIPTIAVPVVLLGTFGVMSAFGFSINTLTMFGLVLAIGLLVDDAIVVVENVERLM 420 N RATLIPTIAVPVVLLGTF +++AFG+SINTLTMFG+VLAIGLLVDDAIVVVENVER+M Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 Query: 421 SEEDLSPLEATRKSMTQITGALVGIALVLSAVFVPMAFFGGSTGAIYRQFSLTIVSAMVL 480 E+ L P EAT KSM+QI GALVGIA+VLSAVF+PMAFFGGSTGAIYRQFS+TIVSAM L Sbjct: 421 MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480 Query: 481 SVLVALILTPALCATLLKPIKHGEFGAKRGFFGWFNRAFDASANRYQSGVRKVVKQGVRY 540 SVLVALILTPALCATLLKP+ K GFFGWFN FD S N Y + V K++ RY Sbjct: 481 SVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRY 540 Query: 541 GIIYAAMLAVLAILFMRMPTSFLPEEDQGVIMSMVQLPVGATKQRTEVVLADMRDYFMKN 600 +IYA ++A + +LF+R+P+SFLPEEDQGV ++M+QLP GAT++RT+ VL + DY++KN Sbjct: 541 LLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKN 600 Query: 601 EKDNVDSVLTVAGFSFAGSGQNSGMAFIKLKDWKERNTPDRSANAIIGRAMGYLFSIKEA 660 EK NV+SV TV GFSF+G QN+GMAF+ LK W+ERN + SA A+I RA L I++ Sbjct: 601 EKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDG 660 Query: 661 QVFAFNLPPIPELGTATGFDFFLQDRAGVGHDKLMAARNQLLGMAAQDP-NLVRVRPNGM 719 V FN+P I ELGTATGFDF L D+AG+GHD L ARNQLLGMAAQ P +LV VRPNG+ Sbjct: 661 FVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGL 720 Query: 720 EDTPQLDIKIDYEKALAQGLSISDINSTLSSAWGSAYVNDFVDRGRVKKVYLQADAPFRM 779 EDT Q +++D EKA A G+S+SDIN T+S+A G YVNDF+DRGRVKK+Y+QADA FRM Sbjct: 721 EDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRM 780 Query: 780 NPEDLKLWYVRNSAGQMVPFSAFASTDWSFGSPRLERYNGVPAMEIVGEAAPGKSTGDAM 839 PED+ YVR++ G+MVPFSAF ++ W +GSPRLERYNG+P+MEI GEAAPG S+GDAM Sbjct: 781 LPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAM 840 Query: 840 AAIEQMVKQLPEGIGIEWTGLSYQERQAGSQAPALYAISLLVVFLCLAALYESWSIPFSV 899 A +E + +LP GIG +WTG+SYQER +G+QAPAL AIS +VVFLCLAALYESWSIP SV Sbjct: 841 ALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSV 900 Query: 900 MLVVPLGVLGAIVAATLRGLENDVYFQVGLLTTIGLSAKNAILIVEFAKELYDR-GMGLS 958 MLVVPLG++G ++AATL +NDVYF VGLLTTIGLSAKNAILIVEFAK+L ++ G G+ Sbjct: 901 MLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVV 960 Query: 959 EAVVEAARLRLRPILMTSLAFILGVLPLVISTGAGASSRNAIGTGVMGGMISATVLAIFF 1018 EA + A R+RLRPILMTSLAFILGVLPL IS GAG+ ++NA+G GVMGGM+SAT+LAIFF Sbjct: 961 EATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFF 1020 Query: 1019 VPLFFVLVMRYF 1030 VP+FFV++ R F Sbjct: 1021 VPVFFVVIRRCF 1032 Score = 64.5 bits (157), Expect = 2e-12 Identities = 53/328 (16%), Positives = 123/328 (37%), Gaps = 13/328 (3%) Query: 724 QLDIKIDYEKALAQGLSISDINSTLSSA----WGSAYVNDFVDRGRVKKVYLQADAPFRM 779 + I +D + L+ D+ + L G+ + A F+ Sbjct: 183 AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFK- 241 Query: 780 NPEDLKLWYVR-NSAGQMVPFSAFASTDWSFGSPR-LERYNGVPAMEIVGEAAPGKSTGD 837 NPE+ +R NS G +V A + + + R NG PA + + A G + D Sbjct: 242 NPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALD 301 Query: 838 AMAAIEQMVKQL----PEGIGIEWT-GLSYQERQAGSQAPALYAISLLVVFLCLAALYES 892 AI+ + +L P+G+ + + + + + + ++++VFL + ++ Sbjct: 302 TAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQN 361 Query: 893 WSIPFSVMLVVPLGVLGAIVAATLRGLENDVYFQVGLLTTIGLSAKNAILIVE-FAKELY 951 + VP+ +LG G + G++ IGL +AI++VE + + Sbjct: 362 MRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMM 421 Query: 952 DRGMGLSEAVVEAARLRLRPILMTSLAFILGVLPLVISTGAGASSRNAIGTGVMGGMISA 1011 + + EA ++ ++ ++ +P+ G+ + ++ M + Sbjct: 422 EDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALS 481 Query: 1012 TVLAIFFVPLFFVLVMRYFTKHSTKQAR 1039 ++A+ P +++ + + Sbjct: 482 VLVALILTPALCATLLKPVSAEHHENKG 509
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.4 bits (66), Expect = 0.034 Identities = 25/176 (14%), Positives = 44/176 (25%), Gaps = 32/176 (18%) Query: 69 DLRIAALNVEAYEARYRIQRAAQLPTLAANGSGTRQQGSDDLSSTGQGTISSQYGANIGI 128 L A L Y+ R +LP L Q S++ I Q+ Sbjct: 142 SLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQF------ 195 Query: 129 TSYELDLFGRIQSLKDQALENYLAQVETQRSTQIALIASVANAYLNLLADQELLALSEAT 188 +N Q E + A +V + E Sbjct: 196 ----------------STWQNQKYQKELNLDKKRAERLTV----------LARINRYENL 229 Query: 189 LATEQESYGLTEHKYRLGAASEMELAQGRTALESAKVSLAQYQRQVKQDRNGLALL 244 E+ A ++ + + A L Y+ Q++Q + + Sbjct: 230 SRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSA 285
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 175 bits (445), Expect = 3e-54 Identities = 79/358 (22%), Positives = 147/358 (41%), Gaps = 48/358 (13%) Query: 1 MKILVTGGAGFIGSAVVRHIIQNTNDSVLNLDKLT--YAGNL-ESLASVASSERYAFEQV 57 MK LVTG AGFIG V + +++ + V+ +D L Y +L ++ + + + F ++ Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQ-VVGIDNLNDYYDVSLKQARLELLAQPGFQFHKI 59 Query: 58 DICNRAELERVFAQHQPDAVMHLAAESHVDRSITGPADFIETNIVGTYMLLEVARAYWNG 117 D+ +R + +FA + V V S+ P + ++N+ G +LE R Sbjct: 60 DLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHN--- 116 Query: 118 LDEVRKAAFRFHHISTDEVYGDLPHPDEVALGVALPLFTETTPYAPSSPYSASKASSDHL 177 +++ + S+ VYG +P T+ + P S Y+A+K +++ + Sbjct: 117 --KIQHLLYA----SSSSVYGLNRK---------MPFSTDDSVDHPVSLYAATKKANELM 161 Query: 178 VRAWRRTYGLPTVVTNCSNNYGPYHFPEKLIPLVILNSLDGKPLPVYGKGDQIRDWLYVE 237 + YGLP YGP+ P+ + L+GK + VY G RD+ Y++ Sbjct: 162 AHTYSHLYGLPATGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYID 221 Query: 238 DHARALYTVV------------------TTGVIGETYNIGGHNEKQNLEVVHTICDLLDE 279 D A A+ + + YNIG + + ++ + + D L Sbjct: 222 DIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGI 281 Query: 280 MVPKTGSYHDQITYVADRPGHDRRYAIDASKMSVELAWQPQETFESGIRKTVQWYLDN 337 K + +PG + D + + + P+ T + G++ V WY D Sbjct: 282 EAKK--------NMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDF 331
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 41.3 bits (97), Expect = 3e-06 Identities = 43/204 (21%), Positives = 76/204 (37%), Gaps = 42/204 (20%) Query: 1 MHILLFGKNGQVGWELQRALAPLG-RITAVDF--DSTD------------------YCGD 39 M L+ G G +G+ + + L G ++ +D D D + D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 40 FSKPAGVAETVRQVKPDVIVNAAAHTAVDKA-ESEREFAELLNIT---SVAAIAREAEAL 95 + G+ + + + + AV + E+ +A+ N+T ++ R + Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADS-NLTGFLNILEGCRHNKI- 118 Query: 96 GAWLVHYSTDYVFDGSGERPWLETD-VTAPLNVYGETKLAGEQAAALCSRHL------IF 148 L++ S+ V+ + + P+ D V P+++Y TK A E A S HL Sbjct: 119 -QHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYS-HLYGLPATGL 176 Query: 149 RTSWVYAARGA------NFAKTML 166 R VY G F K ML Sbjct: 177 RFFTVYGPWGRPDMALFKFTKAML 200
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 103 bits (259), Expect = 3e-27 Identities = 79/355 (22%), Positives = 129/355 (36%), Gaps = 42/355 (11%) Query: 7 LITGVTGQDGSYLAEFLLEKGYEVHGIKRRASQFNTQRVDHIYKDPH--------EENVD 58 L+TG G G ++++ LLE G++V GI N Y D Sbjct: 4 LVTGAAGFIGFHVSKRLLEAGHQVVGI----DNLND------YYDVSLKQARLELLAQPG 53 Query: 59 FKLHYGDLTDSSNLTRIIAEVQPDEVYNLGAQSHVAVSFDSPEYTADVDAIGTLRLLEAI 118 F+ H DL D +T + A + V+ + V S ++P AD + G L +LE Sbjct: 54 FQFHKIDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGC 113 Query: 119 RFLGLTKKTRFYQASTSELYGLVQEIPQRETTPF-YPRSPYAVAKMYAYWITVNYREAYG 177 R + AS+S +YGL +++P +P S YA K + Y YG Sbjct: 114 RHNKI---QHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYG 170 Query: 178 MYACNGILFNHESPRRGETFVTRKITRGLANIAQGLEKCLYMGNMDSLRDWGHARDYVKM 237 + A F P K T+ + +G +Y RD+ + D + Sbjct: 171 LPATGLRFFTVYGPWGRPDMALFKFTK---AMLEGKSIDVY-NYGKMKRDFTYIDDIAEA 226 Query: 238 QWMMLQQEQPEDFVIATGVQYSVREFIKIAAAELGIELSFIGSG--VDEKAVVSAISGDK 295 + VI E AA+ + IG+ V+ + A+ Sbjct: 227 IIRLQD-------VIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALED-- 277 Query: 296 APALKVGDIIVCVDPRYFRPAEVETLLGDPSNAKNKLGWEPETTLAEMVQEMVAY 350 AL + + +P +V D +G+ PETT+ + V+ V + Sbjct: 278 --ALGIEAKKNMLPL---QPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNW 327
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 61.0 bits (148), Expect = 1e-12 Identities = 44/188 (23%), Positives = 65/188 (34%), Gaps = 26/188 (13%) Query: 23 RILVTGANGFVGKAVCEHLLRCGANVKGA--------VRSRPFASYQVQAPSLT------ 68 + LVTGA GF+G V + LL G V G V + + P Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 69 ADANWTALL---QQVDVVVHCAARVHVMADTATDPLAAFRAVNTEGSLALARQAAEAGVK 125 AD L + V R+ V + +P A+ N G L + ++ Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAV-RYSLENP-HAYADSNLTGFLNILEGCRHNKIQ 119 Query: 126 RFIFISSIKVNGERTEPGKPFDENVQSP-PEDPYGRSKYEAEQGLMALA--KECDMAVTI 182 ++ SS V G + PF + P Y +K E LMA + T Sbjct: 120 HLLYASSSSVYGLNRKM--PFSTDDSVDHPVSLYAATKKANE--LMAHTYSHLYGLPATG 175 Query: 183 IRPPLIYG 190 +R +YG Sbjct: 176 LRFFTVYG 183
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 56.7 bits (137), Expect = 1e-10 Identities = 59/324 (18%), Positives = 115/324 (35%), Gaps = 53/324 (16%) Query: 291 VMVTGAGGSIGSELCRQILRCRPSTLVLFELSEYALYVLHKNLREQCQREGIETDLVPLL 350 +VTGA G IG + +++L + + L++Y L + E + G + Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQF----HK 58 Query: 351 GSVQRQHRLKTVMQSFKIQTVYHTAA-------------YKHVPLVEF-NIIEGVR-NNV 395 + + + + S + V+ + Y L F NI+EG R N + Sbjct: 59 IDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKI 118 Query: 396 FGTLYAAQAAIEAGVETFVLISTDKAVRPTNTMGASKRLAELILQALTREKHNTRFCMVR 455 LYA+ +++ + D P + A+K+ EL+ + + +R Sbjct: 119 QHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYS-HLYGLPATGLR 177 Query: 456 FGNVLGSSGS---VVPLFRQQIDKGGPITL-THPDIIRYFMTIPEAAQLVIQA------- 504 F V G G + F + + +G I + + + R F I + A+ +I+ Sbjct: 178 FFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPHA 237 Query: 505 -----------GAMGEGGDVFVLDMGQPVRIMELAKRMIRLSGLTLRDEQRP--DGDI-- 549 A V+ + PV +M+ + + G+ + P GD+ Sbjct: 238 DTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLPLQPGDVLE 297 Query: 550 -------AIEVTGLRPGEKLYEEL 566 EV G P + + + Sbjct: 298 TSADTKALYEVIGFTPETTVKDGV 321
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 562 bits (1449), Expect = 0.0 Identities = 224/334 (67%), Positives = 266/334 (79%), Gaps = 1/334 (0%) Query: 1 MHYLVTGAAGFIGSAVSQRLCQQGHTVIGIDNLNDYYEVSLKESRLARLASESNFVFRKI 60 M YLVTGAAGFIG VS+RL + GH V+GIDNLNDYY+VSLK++RL LA + F F KI Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLA-QPGFQFHKI 59 Query: 61 DLADREGMAKLFTHERFDRVIHLAAQAGVRYSLENPFAYADSNLIGHLAILEGCRHTGVK 120 DLADREGM LF F+RV + VRYSLENP AYADSNL G L ILEGCRH ++ Sbjct: 60 DLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQ 119 Query: 121 HLVYASSSSVYGMNGKMPFATTDAVDHPISLYAASKKANELMAHTYSHLYGIPTTGLRFF 180 HL+YASSSSVYG+N KMPF+T D+VDHP+SLYAA+KKANELMAHTYSHLYG+P TGLRFF Sbjct: 120 HLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFF 179 Query: 181 TVYGPWGRPDMALFKFTKAMLAGQPIDVYNNGQLSRDFTYIDDIVEGILRISDVVPVANP 240 TVYGPWGRPDMALFKFTKAML G+ IDVYN G++ RDFTYIDDI E I+R+ DV+P A+ Sbjct: 180 TVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPHADT 239 Query: 241 DWQSEKGSPADSSAPYRIFNIGNGSPVKLMSFIDALEKALGIEAIKNMMPMQAGDVYATW 300 W E G+PA S APYR++NIGN SPV+LM +I ALE ALGIEA KNM+P+Q GDV T Sbjct: 240 QWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLPLQPGDVLETS 299 Query: 301 ADTDDLFKATGYRPAMSVEQGVQAFVDWYKNYYK 334 ADT L++ G+ P +V+ GV+ FV+WY+++YK Sbjct: 300 ADTKALYEVIGFTPETTVKDGVKNFVNWYRDFYK 333
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 61.0 bits (148), Expect = 1e-12 Identities = 26/124 (20%), Positives = 50/124 (40%), Gaps = 11/124 (8%) Query: 181 VLVADDSSVARKQVQRALEAIGVQCVLAKDGREALNMLLEMSKNGPIKDQIALVISDIEM 240 +LVADD + R + +AL G + + + LV++D+ M Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAA--------GDGDLVVTDVVM 57 Query: 241 PEMDGYTFTAEIRNNPNLKDLHVILHTSLSGVFNQAMVQKVGANNFIAK-FQPDELAKAV 299 P+ + + I+ DL V++ ++ + + GA +++ K F EL + Sbjct: 58 PDENAFDLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGII 115 Query: 300 QGAL 303 AL Sbjct: 116 GRAL 119
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 33.8 bits (77), Expect = 2e-04 Identities = 10/38 (26%), Positives = 18/38 (47%) Query: 99 NVNMVEEMADMINASRSYQTNVQVADSAKKMLQQTLNL 136 VN+ EE ++ + Y N QV +A + +N+ Sbjct: 508 GVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 47.3 bits (112), Expect = 7e-08 Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 7/93 (7%) Query: 2 SFNNALSGVNAAQKDLNVTANNIANVNTTGFKESRAEFADVYANSIFVNAKTQVGNGVAT 61 NNA+SG+NAAQ LN +NNI++ N G+ A + + A VGNGV Sbjct: 3 LINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMA---QANSTLGAGGWVGNGVYV 59 Query: 62 GAVAQQFHQGALQFTNNALDLSIQGNGFFVTSD 94 V +++ F N L + + Sbjct: 60 SGVQREYD----AFITNQLRAAQTQSSGLTARY 88 Score = 39.2 bits (91), Expect = 3e-05 Identities = 11/49 (22%), Positives = 25/49 (51%) Query: 396 SIKSSALEQSNVDLTSQLVNLITAQRNFQANSRSLEVNSSLQQTILQIR 444 + + S V+L + NL Q+ + AN++ L+ +++ ++ IR Sbjct: 498 QLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINIR 546
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 30.2 bits (68), Expect = 0.019 Identities = 35/159 (22%), Positives = 68/159 (42%), Gaps = 12/159 (7%) Query: 49 FNFAMPDMLASGMLNKADIGMLW--TLFYITYGCSKFFSGIISDRANPRYFMGLGLMATG 106 N ++PD+ + NK W T F +T+ G +SD+ + + G++ Sbjct: 33 LNVSLPDI--ANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINC 90 Query: 107 VINILFGLSSSLWLFAALWVANAFFQGWG---WPPCSKLLTSWY-SRSERGFWWSAWNTA 162 +++ + S F +L + F QG G +P ++ + Y + RG + + Sbjct: 91 FGSVIGFVGHS---FFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSI 147 Query: 163 HNVGGALIPLIVSTLALQHGWRYGMIVPGLIAILAGLFL 201 +G + P I +A W Y +++P +I I+ FL Sbjct: 148 VAMGEGVGPAIGGMIAHYIHWSYLLLIP-MITIITVPFL 185
>PF06580#Sensor histidine kinase Length = 349 Score = 35.6 bits (82), Expect = 4e-04 Identities = 34/144 (23%), Positives = 61/144 (42%), Gaps = 13/144 (9%) Query: 366 LRPRQLDDMSLEQAVRGLLRELELERRGIVTRLEWQLA-DAGLSDAQRVTLFRVCQEGLN 424 LR +SL + + L+L RL+++ + + D Q + + Q + Sbjct: 208 LRYSNARQVSLADELTVVDSYLQLASIQFEDRLQFENQINPAIMDVQVPPM--LVQTLVE 265 Query: 425 NVVKHANASS-----VTIRAHRQGERLTLLLEDDGCGLPEHRTP-QGYGLLGIRERVQAL 478 N +KH A + ++ + +TL +E+ G ++ G GL +RER+Q L Sbjct: 266 NGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKESTGTGLQNVRERLQML 325 Query: 479 GG---ALQLSCVHG-TQLTVTLPG 498 G ++LS G V +PG Sbjct: 326 YGTEAQIKLSEKQGKVNAMVLIPG 349
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 73.3 bits (180), Expect = 1e-17 Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 5/117 (4%) Query: 2 IKIALIDDHQIVRSGFAQLLNLEPDLRVVAEFGSAAEALAGLPGSGVQLCVCDISMPDQS 61 I + DD +R+ Q L+ V +AA + L V D+ MPD++ Sbjct: 4 ATILVADDDAAIRTVLNQALSRA-GYDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 62 GLDLLKRLPS---GLAVVMLSVHDSPALIEQALQAGAKGFLSKRCSPDELIAAVRTA 115 DLL R+ L V+++S ++ +A + GA +L K ELI + A Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRA 118
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 34.9 bits (80), Expect = 6e-04 Identities = 35/144 (24%), Positives = 56/144 (38%), Gaps = 2/144 (1%) Query: 8 VLLLLCGLLLLT-LAIAVLNTLVPLWLAHDNLPTWQVGMVSSAYFSGNLLGTLLAGVLIK 66 +L+ LC L + L VLN +P N P V++A+ +GT + G L Sbjct: 15 ILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSD 74 Query: 67 RYGFNRSYYLASALFAIGCVGLGITLGFWSWLGW-RFLAGIGCAMIWVVVESALMCSGNA 125 + G R + G V + F+S L RF+ G G A +V + Sbjct: 75 QLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPK 134 Query: 126 RNRGRLLAAYMMVYYLGTVLGQLL 149 NRG+ + +G +G + Sbjct: 135 ENRGKAFGLIGSIVAMGEGVGPAI 158 Score = 31.4 bits (71), Expect = 0.006 Identities = 25/154 (16%), Positives = 57/154 (37%), Gaps = 8/154 (5%) Query: 6 RPVLLLLCGLLLLTLAIAVLNTLVPLWLAHDN-LPTWQVGMVSSAYFSGNLLGTL---LA 61 P ++ + ++ +A ++VP + + L T ++G S F G + + + Sbjct: 256 IPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIG--SVIIFPGTMSVIIFGYIG 313 Query: 62 GVLIKRYGFNRSYYLASALFAIGCVGLGITLGFWSWL-GWRFLAGIG-CAMIWVVVESAL 119 G+L+ R G + ++ + L SW + +G + V+ + + Sbjct: 314 GILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFTKTVISTIV 373 Query: 120 MCSGNARNRGRLLAAYMMVYYLGTVLGQLLVSKL 153 S + G ++ +L G +V L Sbjct: 374 SSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGL 407
>ECOLIPORIN#E.coli/Salmonella-type porin signature. Length = 383 Score = 113 bits (285), Expect = 9e-31 Identities = 98/373 (26%), Positives = 147/373 (39%), Gaps = 39/373 (10%) Query: 1 MKKTILAIAIPALFAS-AANAAVVYDKDGTTFDVYGRVQANYYGDHNTADSTAASGYKDV 59 MK+ +LA+ IPAL A+ AA+AA +Y+KDG D+YG+V +Y S Sbjct: 1 MKRKVLALVIPALLAAGAAHAAEIYNKDGNKLDLYGKVDGLHY----------FSDDSSK 50 Query: 60 DGELVGSSRLGWSGKIALNNTWSGIAKTEWQVS---AENSANKFDSRHIYVGFDGTQYGK 116 DG+ R+G+ G+ +N+ +G + E+ V E +R + G YG Sbjct: 51 DGDQT-YMRVGFKGETQINDQLTGYGQWEYNVQANTTEGEGANSWTRLAFAGLKFGDYGS 109 Query: 117 IIFGQTDTAFYDVLEPTDIFNEWG-----DAGNFYDGRQEGQVIYSNT-----YGGFKGK 166 +G+ YDV TD+ E+G A N+ GR G Y NT G Sbjct: 110 FDYGRNYGVLYDVEGWTDMLPEFGGDSYTYADNYMTGRANGVATYRNTDFFGLVDGLNFA 169 Query: 167 LSYQTNDDKAVKVTDVGQGIKETAVYGADVKRNYGYAAAAGYDFDFGLGLNAGYSYSDLE 226 L YQ ++ G+ + YD G A Y+ SD Sbjct: 170 LQYQGKNESQSADDVNIGTNNRNNGDDIRYDNGDGFGISTTYDIGMGFSAGAAYTTSDRT 229 Query: 227 NTK-----TNNTGDKKE-WALGAHYAINGFYFAGVYTQG------DLSYDNTTGGDKDKG 274 N + T GDK + W G Y N Y A +Y++ + GG +K Sbjct: 230 NEQVNAGGTIAGGDKADAWTAGLKYDANNIYLATMYSETRNMTPYGKTDKGYDGGVANKT 289 Query: 275 RGYELAASYNVD--AWTFLAGYNFKEAKVNSNTAGAEYKDLLDETLLGVQYAFTSKLKAY 332 + +E+ A Y D ++ K + N + KDL+ +G Y F Y Sbjct: 290 QNFEVTAQYQFDFGLRPAVSFLMSKGKDLTYNNVNGDDKDLVKYADVGATYYFNKNFSTY 349 Query: 333 TEYKIQGIDKLDD 345 +YKI +D D Sbjct: 350 VDYKINLLDDDDP 362
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 343 bits (882), Expect = e-116 Identities = 122/458 (26%), Positives = 218/458 (47%), Gaps = 26/458 (5%) Query: 19 PEHLEFVDDGAAAVLLSTPT--RARALLWACFLFFMSAIVWAAWAELDEVTVGQGKVIPS 76 P HLE L+ TP R R + + F + A + + +++ V GK+ S Sbjct: 43 PAHLE---------LIETPVSRRPRLVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHS 93 Query: 77 RQLQVIQNLEGGIVKEIFVKEGDIVEKGQPLLRIDDTRFRSDFREREQELVTLKGDIARL 136 + + I+ +E IVKEI VKEG+ V KG LL++ +D + + L+ + + R Sbjct: 94 GRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRY 153 Query: 137 RSEIQSVVVKTGPNLGWREQVVVDKQPIDFPD--GFENVFAEYAAREKSVQDERLNNLNN 194 + +S+ + P + PD F+NV E R S+ E+ + N Sbjct: 154 QILSRSIELNKLP-------------ELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQN 200 Query: 195 QLYILGQQIEQKEQETIELNAKIRTVARSVDLARQELNISRPLAKEGIVPQVELIKLERQ 254 Q Y +++K E + + A+I + + L+ L + + + +++ E + Sbjct: 201 QKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENK 260 Query: 255 VNEMQGELESNRLLIPKLDSVLRETISKRNDIALKFRADSQTELNERQGKLSQLSEGQVG 314 E EL + + +++S + + + F+ + +L + + L+ Sbjct: 261 YVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAK 320 Query: 315 LRDRVDRTSVIAPLKGTIKKLKINTLGGVVQPGMDLMEIVPLEDTLLVEAKVSPKDIAFL 374 +R + + AP+ +++LK++T GGVV LM IVP +DTL V A V KDI F+ Sbjct: 321 NEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFI 380 Query: 375 RPGLEAVVKITAYDFTIYGGLHGKVEQISADSIQDEDGNSFYLVRVRTEKSYLGDELNAL 434 G A++K+ A+ +T YG L GKV+ I+ D+I+D+ + V + E++ L + Sbjct: 381 NVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVIISIEENCLSTGNKNI 440 Query: 435 PIIPGMLASADIITGKKSVLDYLLKPILRAKQSALRER 472 P+ GM +A+I TG +SV+ YLL P+ + +LRER Sbjct: 441 PLSSGMAVTAEIKTGMRSVISYLLSPLEESVTESLRER 478
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 98.5 bits (245), Expect = 4e-22 Identities = 54/143 (37%), Positives = 68/143 (47%), Gaps = 12/143 (8%) Query: 4046 HAIGSDFGDSITGNSLDNILSGGDGDDLLYGMGGKDTLVGGKGNDVLDGGSGNDTLYGEA 4105 IG+ D G+ +I G DGDDL+ G G D L G KGND L GG+G+D LYG Sbjct: 721 ELIGTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGD 780 Query: 4106 GDDTLIGGIGNDILQGGDGKD------------LLIGGLGSDTMTGGAGSDTFKWLAGDA 4153 G+D LIG GN+ L GGDG D +L GG G+D + G G+D GD Sbjct: 781 GNDKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDD 840 Query: 4154 DGSTDKITDFTLGNPTSGGDVLD 4176 D G ++D Sbjct: 841 LLKGGYGNDIYRYLSGYGHHIID 863 Score = 38.8 bits (90), Expect = 6e-04 Identities = 24/73 (32%), Positives = 31/73 (42%) Query: 4080 KDTLVGGKGNDVLDGGSGNDTLYGEAGDDTLIGGIGNDILQGGDGKDLLIGGLGSDTMTG 4139 + T + GK D + L G D G DI G DG DL+ G G+D + G Sbjct: 701 EFTHINGKNLTETDNLYSVEELIGTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYG 760 Query: 4140 GAGSDTFKWLAGD 4152 G+DT GD Sbjct: 761 DKGNDTLSGGNGD 773
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 400 bits (1029), Expect = e-135 Identities = 150/379 (39%), Positives = 205/379 (54%), Gaps = 24/379 (6%) Query: 344 NVQAQQEISNTTGAREKTLRVDGPAPQGDFANIIYQSAVMEKVLEKVKLVAQSDCTVLIL 403 + R L D D ++ +SA M+++ + + Q+D T++I Sbjct: 111 LIGIIGRALAEPKRRPSKLEDDSQ----DGMPLVGRSAAMQEIYRVLARLMQTDLTLMIT 166 Query: 404 GETGTGKELIAQAIHALSARHDHEMVKVNCAAIPTGLIESDLFGHEKGAFTGALTQRIGR 463 GE+GTGKEL+A+A+H R + V +N AAIP LIES+LFGHEKGAFTGA T+ GR Sbjct: 167 GESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGR 226 Query: 464 FERAHKGTLFLDEVGDMPLDLQPKLLRVLQEHELERVGNSNPIAIDVRLVAATNCDLLSM 523 FE+A GTLFLDE+GDMP+D Q +LLRVLQ+ E VG PI DVR+VAATN DL Sbjct: 227 FEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQS 286 Query: 524 VKNKRFRSDLYYRLNVFPIELPPLRERREDIPLLVNFFIKKIAKRMRRTITSIPADAMKM 583 + FR DLYYRLNV P+ LPPLR+R EDIP LV F+++ A++ + +A+++ Sbjct: 287 INQGLFREDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQ-AEKEGLDVKRFDQEALEL 345 Query: 584 LVSLPWYGNIRELENIIERAVVMTRGHVL-------------NLSPDELLPLKGFHKIET 630 + + PW GN+RELEN++ R + V+ SP E + + Sbjct: 346 MKAHPWPGNVRELENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSIS 405 Query: 631 LVYDEPARELFREPLPALPQG---DEAQGEDERVSIIRALKACNGIVAGERGAAQRLGMK 687 +E R+ F ALP D E E I+ AL A G AA LG+ Sbjct: 406 QAVEENMRQYFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQI---KAADLLGLN 462 Query: 688 RTTLLSKMKRLGISAKDPR 706 R TL K++ LG+S Sbjct: 463 RNTLRKKIRELGVSVYRSS 481
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 360 bits (925), Expect = e-127 Identities = 143/305 (46%), Positives = 191/305 (62%), Gaps = 10/305 (3%) Query: 1 MAIPTLNNYAMP--SQWKANKVDWSLDPKRAALLIHDMQEYFTAFYGENSPLIAALTERL 58 MAIP + Y MP S NKV W DP RA LLIHDMQ YF + + + L+ + Sbjct: 1 MAIPAIQPYQMPTASDMPQNKVSWVPDPNRAVLLIHDMQNYFVDAFTAGASPVTELSANI 60 Query: 59 AAVRKQCKALGIPVFYTAQPKDQSPEDRALLNDMWGPGLNKSPELQQVVAALRPERDDTV 118 ++ QC LGIPV YTAQP Q+P+DRALL D WGPGLN P ++++ L PE DD V Sbjct: 61 RKLKNQCVQLGIPVVYTAQPGSQNPDDRALLTDFWGPGLNSGPYEEKIITELAPEDDDLV 120 Query: 119 LVKWRYSAFQRSELEQMLKALGRDQLIIGGIYGHIGCMMTACDAFMRDIQPFFLADGVAD 178 L KWRYSAF+R+ L +M++ GRDQLII GIY HIGC++TAC+AFM DI+ FF+ D VAD Sbjct: 121 LTKWRYSAFKRTNLLEMMRKEGRDQLIITGIYAHIGCLVTACEAFMEDIKAFFVGDAVAD 180 Query: 179 FSLADHQMALDYVATRCGKVIPCEEVL-----ALAPVAASAAQTNPLLTNPLLTYEGLKA 233 FSL HQMAL+Y A RC + + +L A A V ++A T + T E ++ Sbjct: 181 FSLEKHQMALEYAAGRCAFTVMTDSLLDQLQNAPADVQKTSANTGKK---NVFTCENIRK 237 Query: 234 RLLSHIDEDEGEFDPDENLIDYGLDSVRIMALLTEWRAAGVELGFVDLAKLPTLNGWWRL 293 ++ + E + E+L+D GLDSVRIM L+ +WR G E+ FV+LA+ PT+ W +L Sbjct: 238 QIAELLQETPEDITDQEDLLDRGLDSVRIMTLVEQWRREGAEVTFVELAERPTIEEWQKL 297 Query: 294 IEAKL 298 + + Sbjct: 298 LTTRS 302
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 256 bits (654), Expect = 4e-88 Identities = 110/253 (43%), Positives = 152/253 (60%), Gaps = 13/253 (5%) Query: 7 GKRVWVTGAGRGIGCEVATQFVAAGAAVVGLDLAF-----------LEADYPYATRLLDI 55 GK ++TGA +GIG VA + GA + +D EA + A D+ Sbjct: 8 GKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPA-DV 66 Query: 56 GDSKAVNACCAALLAD-GGLDVLVNGAGVLRLGPTETLSDDDWHDCMTVNASGVFYLLRA 114 DS A++ A + + G +D+LVN AGVLR G +LSD++W +VN++GVF R+ Sbjct: 67 RDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRS 126 Query: 115 LVPHFKEQRRGAIVTIGSNAAHVPRMQMAAYCASKAAVTSLTQTVGLELAPFGVRANLVS 174 + + ++R G+IVT+GSN A VPR MAAY +SKAA T+ +GLELA + +R N+VS Sbjct: 127 VSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVS 186 Query: 175 PGSTDTPMLRGMLPSEEAMARTIAGLPEQFKLGIPLRKVATPAEIAHTVLFLASDLASHI 234 PGST+T M + E + I G E FK GIPL+K+A P++IA VLFL S A HI Sbjct: 187 PGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHI 246 Query: 235 TLQDLVVDGGATL 247 T+ +L VDGGATL Sbjct: 247 TMHNLCVDGGATL 259
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 34.0 bits (78), Expect = 5e-04 Identities = 34/173 (19%), Positives = 63/173 (36%), Gaps = 12/173 (6%) Query: 27 PFSAQSHSPNSFLEQRNDLALSSAA---FVVANPRTGEVLSERNANRVMPIASITKLMTA 83 H+ LEQ + + + +G L+ A+ P+ S K++ Sbjct: 14 TLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADERFPMMSTFKVVLC 73 Query: 84 LVVLDANQR----LSEMLTVTMAD-VDRLKGTGSRLAVGSRLSRADMLHIALMSSENRAA 138 VL L + D VD + LA G ++ ++ A+ S+N AA Sbjct: 74 GAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADG--MTVGELCAAAITMSDNSAA 131 Query: 139 SALARNY--PGGQRAFIEAMNAKARMLGMWSTQFSDSTGLTPRNVSSAHDLAK 189 + L P G AF+ + L W T+ +++ R+ ++ +A Sbjct: 132 NLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPASMAA 184
>CABNDNGRPT#NodO calcium binding signature. Length = 479 Score = 64.2 bits (156), Expect = 5e-12 Identities = 47/165 (28%), Positives = 64/165 (38%), Gaps = 11/165 (6%) Query: 3369 LYLDGLTAGDHVLGLSAESSAGGATISSPLDTVTIHTQAGH-TLLGSDQGDWMFGSAGDD 3427 + L+ + D S A G TI +G+ L+G+ + + G AG+D Sbjct: 315 INLNEGSFSDVGGLKGNVSIAHGVTIE------NAIGGSGNDILVGNSADNILQGGAGND 368 Query: 3428 RLLGGKGDDILTGGAGSDLFVWQQGDAGNAGQPAIDTITDFHPEEGDRIDLADLLKGVTD 3487 L GG G D L GGAG D FV+ G D I DF D+IDL+ Sbjct: 369 VLYGGAGADTLYGGAGRDTFVYGSGQDSTVAAY--DWIADFQK-GIDKIDLSAFRNEGQL 425 Query: 3488 SSVDGLL-GHLQASVTSVSNGLSDVNLSVSPAGDGQVTQQITLKG 3531 S V G Q + S NL + AG V + + G Sbjct: 426 SFVQDQFTGKGQEVMLQWDAANSITNLWLHEAGHSSVDFLVRIVG 470
>SECA#SecA protein signature. Length = 901 Score = 57.6 bits (139), Expect = 4e-12 Identities = 17/21 (80%), Positives = 20/21 (95%) Query: 171 RVGRNDPCPCGSGKKFKKCCG 191 +VGRNDPCPCGSGKK+K+C G Sbjct: 878 KVGRNDPCPCGSGKKYKQCHG 898
>OMS28PORIN#OMS28 porin signature. Length = 257 Score = 30.1 bits (67), Expect = 0.020 Identities = 47/190 (24%), Positives = 81/190 (42%), Gaps = 19/190 (10%) Query: 299 EHYDHQMHGHSRETDQVVTAVTEMSSTAQEVAASASNAATATSDAARESDAARGVVGTAI 358 EH D + + + DQV A+ ++ ++V++ ++ + +DA GVV + Sbjct: 40 EHSDQKDNKKLDQKDQVNQALDTINKVTEDVSSKLEGVRESSLELVESNDA--GVVKKFV 97 Query: 359 NSINRLVGEVHTASGVIEQLAQETAKIGSVVEVIRGIAEQTNLLALNAAIEAARAGEQGR 418 S++ L+ +V + V Q A AK +V AE N +E ++ Q Sbjct: 98 GSMS-LMSDVAKGTVVASQEATIVAKCSGMV------AE-----GANKVVEMSKKAVQET 145 Query: 419 GFAV-VADEVRSLAGRTQQSTKEIN----EMLQRLQGGVKQAVDVMQASEERSQETVQEA 473 AV VA E L + K N E+ + V+Q + + ASE ETVQEA Sbjct: 146 QKAVSVAGEATFLIEKQIMLNKSPNNKELELTKEEFAKVEQVKETLMASERALDETVQEA 205 Query: 474 SHIATSLDSM 483 + ++ + Sbjct: 206 QKVLNMVNGL 215
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 45.4 bits (107), Expect = 2e-06 Identities = 66/326 (20%), Positives = 114/326 (34%), Gaps = 11/326 (3%) Query: 276 AAEKNRLSELALKARQELAGKRRL-LAEEKQRAIYLADEVEQLTNREKLLTDELESAAEH 334 +A R L+ QE A K + K + L+ + L + LT+EL +A E Sbjct: 41 SAVATRSQTDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEK 100 Query: 335 LAKVMAAVSLQ-KKIEMYRADLAELVDKLEQQQAIVEEIHGQLLEVEERKELAQAEVDSL 393 L K ++S + KI+ A A+L LE ++ +E K A L Sbjct: 101 LRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADL 160 Query: 394 KTQLADYQQALDIQQTRAIQYRQAVQALETAREQCELPGLGAEQASDTLHQFRAAEQSLT 453 + L + ALE + + E GA S A ++L Sbjct: 161 EKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTAD---SAKIKTLE 217 Query: 454 SRVLGAEQQLALAKAAVAEHEAAL-ALLLSIAPETVREAAWPTAQALLKRHIEDKARIAQ 512 + + A + A+ A I +AA QA L++ +E Sbjct: 218 AEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMN--F 275 Query: 513 GQGLRAALARLEKESESQQALLRLRDELQQASGQLIASQDELEIFLEAQRTRQEELSEQQ 572 A + LE E + +A + Q A++ L L+A R +++L + Sbjct: 276 STADSAKIKTLEAEKAALEAEKADLEHQSQVLN---ANRQSLRRDLDASREAKKQLEAEH 332 Query: 573 AEVNQRRASLEHQGTQLGRDISELTK 598 ++ ++ E L RD+ + Sbjct: 333 QKLEEQNKISEASRQSLRRDLDASRE 358 Score = 38.5 bits (89), Expect = 2e-04 Identities = 41/313 (13%), Positives = 96/313 (30%), Gaps = 38/313 (12%) Query: 344 LQKKIEMYRADLAELVDKLEQQQAIVEEIHGQLLEVEERKELAQAEVDSLKTQLADYQQA 403 L+ K + L D ++ + +L + ++ +++ L+ + AD ++A Sbjct: 69 LKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKA 128 Query: 404 LDIQQTRAIQYRQAVQALETAREQCELPGLGAEQASDTLHQFRAAEQSLTSRVLGAEQQL 463 L+ + ++ LE + L + + ++ + L Sbjct: 129 LEGAMNFSTADSAKIKTLEAEKAA-------LAARKADLEKALEGAMNFSTADSAKIKTL 181 Query: 464 ALAKAAVAEHEAALALLLSIAPETVREAAWPTAQALLKRHIEDKARIAQGQGLRAALARL 523 KAA+ +A L L + + A + L Sbjct: 182 EAEKAALEARQAELEKAL-------------------------EGAMNFSTADSAKIKTL 216 Query: 524 EKESESQQALLRLRDELQQASGQLIASQDELEIFLEAQRTRQEELSEQQAEVNQRRASLE 583 E E + L L + + +T + E + +A + +LE Sbjct: 217 EAEKAA------LAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALE 270 Query: 584 HQGTQLGRDISELTKLAPRWLKSFEKLEQLREQSGLPLTTAEELSSGMQSVLDKEREFEQ 643 D +++ L + L QS + + L + + + +++ E Sbjct: 271 GAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEA 330 Query: 644 ESNRIAAQKQALE 656 E ++ Q + E Sbjct: 331 EHQKLEEQNKISE 343 Score = 36.6 bits (84), Expect = 8e-04 Identities = 52/319 (16%), Positives = 103/319 (32%), Gaps = 21/319 (6%) Query: 781 AREKRIEQLDLEREGLIE---GYAKAAFEQQKYHRLYGHFRDFIGQHLDIAFRPDPEAEV 837 A + ++L E E K+ E+ + + + + L+ A Sbjct: 82 ALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGA-----MNFS 136 Query: 838 QAKQHEQRKL---QETIAECDKQLSDAKAAAAQLTRHIQLVQGMLPCAHLFAETD---LA 891 A + + L + +A L A A + L E L Sbjct: 137 TADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELE 196 Query: 892 ARLEAAHADVEALKQAEAFIAKHGKALEKLETMVQVLRQDPQDLA-ALQAAYDEVSDLLA 950 LE A A + AL + ++ + + + A A + A Sbjct: 197 KALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKA 256 Query: 951 EQKRRCYALDQLVARLPHFAYQDAQDLLGKASEMSERLKEKLKAAELAARTAGEQHKQIA 1010 + R L++ + +F+ D+ + + E K L+A + + Sbjct: 257 ALEARQAELEKALEGAMNFSTADSAKI-----KTLEAEKAALEAEKADLEHQSQVLNANR 311 Query: 1011 QRHTEALQLRTALNSSVEAKRQTLTEFEQELAAMGLTLSDDMEEKARAHKKEIEELLIRT 1070 Q L +EA+ Q L E + A +L D++ +R KK++E + Sbjct: 312 QSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDA-SREAKKQLEAEHQKL 370 Query: 1071 RSRRTSAEAQLQVTKREIE 1089 + +EA Q +R+++ Sbjct: 371 EEQNKISEASRQSLRRDLD 389
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 28.0 bits (62), Expect = 0.011 Identities = 10/65 (15%), Positives = 26/65 (40%) Query: 68 KPYDDALHIHLLIIFPRYQGRQLGSAVMARLHHEAASEGRLRVTLSSFSANQRAIGFYRR 127 ++ I + + Y+ + +G+A++ + A + L + N A FY + Sbjct: 84 SNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAK 143 Query: 128 LGYQV 132 + + Sbjct: 144 HHFII 148
>AUTOINDCRSYN#Autoinducer synthesis protein signature. Length = 216 Score = 27.5 bits (61), Expect = 0.023 Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 4/49 (8%) Query: 101 LLLQYIGHTLWHAGCRRVVLSVSRLNPRALRFYRRSGWQYRGPNPKHAE 149 L L I ++ G + VS L +RSGW R +E Sbjct: 123 LFLSMINYSK-DKGYDGIYTIVSH---PMLTILKRSGWGIRVVEQGLSE 167
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 43.0 bits (101), Expect = 9e-08 Identities = 26/127 (20%), Positives = 43/127 (33%), Gaps = 13/127 (10%) Query: 30 YEPGERTTTEI----------EQAQILASFVSADNRVMLVLSEHDEIAGFIVGIGQPANR 79 +E G T TE E + S+V + + + + G I +N Sbjct: 30 FENGVWTYTEERFSKPYFKQYEDDDMDVSYVEEEGKAAFLYYLENNCIGRI---KIRSNW 86 Query: 80 NKHVLYCFIGIQHSATGQGFGKKMMSALEAWARAHGFTRMELSVMYHNARACALYRACGF 139 N + L I + +G G ++ WA+ + F + L N AC Y F Sbjct: 87 NGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHF 146 Query: 140 EVEGVKR 146 + V Sbjct: 147 IIGAVDT 153
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 116 bits (293), Expect = 5e-38 Identities = 34/89 (38%), Positives = 56/89 (62%) Query: 4 TKADIAEHLFTQLGMSKREAKDMVEAFFEEIRQALERGEQVKISGFGNFDLREKNQRPGR 63 K D+ + ++K+++ V+A F + L +GE+V++ GFGNF++RE+ R GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGR 62 Query: 64 NPKTGEDIPISARRVVTFRPGQKLKARVE 92 NP+TGE+I I A +V F+ G+ LK V+ Sbjct: 63 NPQTGEEIKIKASKVPAFKAGKALKDAVK 91
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 75.3 bits (185), Expect = 7e-16 Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 2/117 (1%) Query: 1073 QGMRVLLVEDHEVNRVLISMQLTQLGARVISAANGQLALDILQHETVDLVLTDLQMPVMD 1132 G +L+ +D R +++ L++ G V +N + DLV+TD+ MP + Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 1133 GAELCRQLRDSPRWQHLPTYVITADLSEQAAAQLASCGCRGHLDKPLLLKDLANLLR 1189 +L +++ LP V++A + A + + G +L KP L +L ++ Sbjct: 62 AFDLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 397 bits (1021), Expect = e-142 Identities = 145/314 (46%), Positives = 200/314 (63%), Gaps = 8/314 (2%) Query: 1 MKQRIVLALGGNALGNNLP-----EQMKAVQSTAGTIADLIAQGHEVVVTHGNGPQVGMI 55 M +R+V+ALGGNAL E M V+ TA IA++IA+G+EVV+THGNGPQVG + Sbjct: 1 MGKRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSL 60 Query: 56 QQAFEVAARHDPKAPHLPMSVCVALSQGYIGYDLQNALREALLARGIHKPVATLVTQVEV 115 + A + P PM V A+SQG+IGY +Q AL+ L RG+ K V T++TQ V Sbjct: 61 LLHMD-AGQATYGIPAQPMDVAGAMSQGWIGYMIQQALKNELRKRGMEKKVVTIITQTIV 119 Query: 116 DKNDPAFLDPSKPIGGFFSKEEAEAL-MAKGERLKEDAGRGYRRVVASPKPIDIIEKETV 174 DKNDPAF +P+KP+G F+ +E A+ L KG +KED+GRG+RRVV SP P +E ET+ Sbjct: 120 DKNDPAFQNPTKPVGPFYDEETAKRLAREKGWIVKEDSGRGWRRVVPSPDPKGHVEAETI 179 Query: 175 SAMLAAGQVVITVGGGGIPVLREGNHLRGASAVIDKDWASARLAELIDADMLIILTAVEK 234 ++ G +VI GGGG+PV+ E ++G AVIDKD A +LAE ++AD+ +ILT V Sbjct: 180 KKLVERGVIVIASGGGGVPVILEDGEIKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNG 239 Query: 235 VAINFGKPDVQWLDQLSVADANSFIAQGQFAKGSMLPKVEAALSFATSMAGRRSLITLLE 294 A+ +G QWL ++ V + + +G F GSM PKV AA+ F G R++I LE Sbjct: 240 AALYYGTEKEQWLREVKVEELRKYYEEGHFKAGSMGPKVLAAIRFIEW-GGERAIIAHLE 298 Query: 295 KAADGIAGKTGTLI 308 KA + + GKTGT + Sbjct: 299 KAVEALEGKTGTQV 312
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 43.2 bits (102), Expect = 2e-06 Identities = 38/165 (23%), Positives = 64/165 (38%), Gaps = 28/165 (16%) Query: 4 LIKHGVLVDAQGEYRQDLLIENGVI--LERAA--DIQPD------GETELIDASGCYVMP 53 +I + +++D G + D+ +++G I + +A D+QP TE+I G V Sbjct: 71 VITNALILDHWGIVKADIGLKDGRIAAIGKAGNPDMQPGVTIIVGPGTEVIAGEGKIVTA 130 Query: 54 GGIDVHTHF----NIDVGIARSCDDFFSGTRAAACGGTTTIVDHMGFGPAGCNLHHQLAR 109 GG+D H HF I+ + G A G T P ++ + Sbjct: 131 GGMDSHIHFICPQQIEEALMSGLTCMLGGGTGPAHGTLATTCT-----PGPWHIARMIE- 184 Query: 110 YHDYAAEQAVIDYSFHGVVQHVDDAILHEMAAMVQEEGISSFKLY 154 AA+ ++ +F G L EM G +S KL+ Sbjct: 185 ----AADAFPMNLAFAGKGNASLPGALVEMV----LGGATSLKLH 221
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 393 bits (1010), Expect = e-133 Identities = 139/374 (37%), Positives = 206/374 (55%), Gaps = 35/374 (9%) Query: 271 LIGESKPMRALKKLLHRIALSPSSVLVCGESGTGKEVVARAIHRLSPRRDKPFIAINCAA 330 L+G S M+ + ++L R+ + ++++ GESGTGKE+VARA+H RR+ PF+AIN AA Sbjct: 139 LVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAA 198 Query: 331 IPEQLLESELFGYVKGAFTGASSTGKQGLIQAAQQGTLFLDEIGDMPLTMQAKLLRVLEL 390 IP L+ESELFG+ KGAFTGA + G + A+ GTLFLDEIGDMP+ Q +LLRVL+ Sbjct: 199 IPRDLIESELFGHEKGAFTGAQTRST-GRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQ 257 Query: 391 REVTPIGASRPVPVDIRIIAATHQHLEQYIAEGKFREDLFYRLNVIPIHLPPLREREGDV 450 E T +G P+ D+RI+AAT++ L+Q I +G FREDL+YRLNV+P+ LPPLR+R D+ Sbjct: 258 GEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLNVVPLRLPPLRDRAEDI 317 Query: 451 ALLTHYFLNLHTSRIGLLYPGLSPEVMALLEGYRWPGNVRELSNLIEYLVNVVQAGEVIE 510 L +F+ + GL E + L++ + WPGNVREL NL+ L + +VI Sbjct: 318 PDLVRHFVQQ-AEKEGLDVKRFDQEALELMKAHPWPGNVRELENLVRRLT-ALYPQDVIT 375 Query: 511 SILLPPNILRNQRSGADEPPRSAVQIARMPLSPDPYSHGVLADPALSPAAANPASATGTP 570 ++ + + +P SP + ++S A Sbjct: 376 REIIENELR-----------------SEIPDSPIEKAAARSGSLSISQAV---------- 408 Query: 571 WSSPEASLPEPAAGQVERGLTPPLGENGLENMEKQMIEETLLR-LGNKKLAAQALGIGIA 629 E ++ + A + L + L ME +I L GN+ AA LG+ Sbjct: 409 ----EENMRQYFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRN 464 Query: 630 TLYRKIKKYEIAVQ 643 TL +KI++ ++V Sbjct: 465 TLRKKIRELGVSVY 478
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 31.9 bits (72), Expect = 0.010 Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 4/75 (5%) Query: 285 ALRSIFFATTEMKKEVTYQGA----EPRKVGHAAVLGGGLMGGGIAFVTATKAGVPVRIK 340 AL+ FA+ E EV YQ A +P V A+ G L GG A + T AGV + Sbjct: 996 ALKDQRFASLESAAEVLYQFAPKYEKPTNVWANAIGGTSLNSGGNASLYGTSAGVDAYLN 1055 Query: 341 DVASSGIGNAMRYSY 355 + +G Y Y Sbjct: 1056 GEVEAIVGGFGSYGY 1070
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 34.4 bits (79), Expect = 5e-04 Identities = 38/160 (23%), Positives = 64/160 (40%), Gaps = 27/160 (16%) Query: 12 YLGSQILGQGPLIEGLL----IALLCEGHVLIEGAPGLAKT---RAVKALAGAVEGRFTR 64 G ++G+ ++ + + + ++I G G K RA+ G F Sbjct: 134 QDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVA 193 Query: 65 IQFTPDLLPADLTGSEVFHPQDASFV---------FQP---GPLFNHLVLADEINRAPAK 112 I +P DL SE+F + +F F+ G LF DEI P Sbjct: 194 INMAA--IPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLF-----LDEIGDMPMD 246 Query: 113 VQSALLEAMAEHQIT-VGKKSWRLSPLFMVAATQNPIEQE 151 Q+ LL + + + T VG ++ S + +VAAT ++Q Sbjct: 247 AQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQS 286
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 29.6 bits (66), Expect = 0.014 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 2/51 (3%) Query: 81 AQSEAMKTAAKAAGLAVMASGKSRKAEP-QPQPEPAPTPAPIVEVKAVPAP 130 A+ E KT + + S K ++E QPQ EPA P V +K + Sbjct: 1112 AKVETEKTQ-EVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQ 1161
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 96.7 bits (240), Expect = 4e-26 Identities = 68/258 (26%), Positives = 112/258 (43%), Gaps = 19/258 (7%) Query: 5 IALITGASRGLGKQAALALAARSIDLIITYRSQADEAAAVVAEATALGVKAHALPLDVAD 64 IA ITGA++G+G+ A LA++ I ++ VV+ A A A P DV D Sbjct: 10 IAFITGAAQGIGEAVARTLASQGAH-IAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 65 SSSFAAFASQVREQLGAWQRQ--QIDFLVNNAGIGIHATIEQTTEQQFDTLFNIHLKGVF 122 ++ + E +R+ ID LVN AG+ I ++++++ F+++ GVF Sbjct: 69 -------SAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVF 121 Query: 123 FLTQQLLPLIRD--GGRILNLSSGLTRFALPGYAAYAAMKGGVEVLTRYLAKELGPRGIA 180 ++ + + D G I+ + S AAYA+ K + T+ L EL I Sbjct: 122 NASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIR 181 Query: 181 VNVVAPGAIETDFGGGVVRDNQAVNDFIASQTA-------LGRVGQPEDIGGVIAALLSP 233 N+V+PG+ ETD + D I L ++ +P DI + L+S Sbjct: 182 CNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSG 241 Query: 234 DSRWINAQRIEASGGMFL 251 + I + GG L Sbjct: 242 QAGHITMHNLCVDGGATL 259
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 109 bits (273), Expect = 6e-31 Identities = 72/263 (27%), Positives = 119/263 (45%), Gaps = 21/263 (7%) Query: 3 ITQKVIAITGAGRGLGRAIALSLAEQGAQLALIDVNRTDLEVTEAEVRSRDGQCALFVCN 62 I K+ ITGA +G+G A+A +LA QGA +A +D N LE + +++ F + Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 63 VASEPEVEATFAAIQGQFGALHGLINCAGILRDGMLIKVKEGALTEKMSLAQWQSVIDVN 122 V ++ A I+ + G + L+N AG+LR G L +S +W++ VN Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPG---------LIHSLSDEEWEATFSVN 116 Query: 123 LTGTFLCGREGAALMATGGEGGVIINISSIARAGNIGQSNYAASKAGVASLVVTWGKELA 182 TG F R + M G ++ S+ A + YA+SKA G ELA Sbjct: 117 STGVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELA 176 Query: 183 RHGIRVMGIAPGVFATDMTAAMKPEAMARMQQ----------AIPVGTLGQAAQLAQTVH 232 + IR ++PG TDM ++ + Q IP+ L + + +A V Sbjct: 177 EYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVL 236 Query: 233 FILAND--YLSGRMIELDGGLRL 253 F+++ +++ + +DGG L Sbjct: 237 FLVSGQAGHITMHNLCVDGGATL 259
>cloacin#Cloacin signature. Length = 551 Score = 30.8 bits (69), Expect = 0.011 Identities = 37/165 (22%), Positives = 62/165 (37%), Gaps = 13/165 (7%) Query: 177 FISGAGSTDVLVVMARTGGEGAKGISA--FMVPAQTPGVSYGKAEEKMGWNSQPTREV-- 232 F G + D ++ + G A +S + P Q + + W++ E Sbjct: 261 FTQGGNTRDAVIRFPKDSGHNAVYVSVSDVLSPDQVKQRQDEENRRQQEWDATHPVEAAE 320 Query: 233 -NFSAVRIPARYRLGQEGEGFKF--AMQALDGGRINIATCSVGTAQQALDDALAHVQQRQ 289 N+ AR L Q E QA N + A + L DA+A ++Q Sbjct: 321 RNYER----ARAELNQANEDVARNQERQAKAVQVYNSRKSELDAANKTLADAIAEIKQFN 376 Query: 290 QFGHPISEFQSVQFRLADMATELAAARLLVRQAAARLDAGAPDKS 334 +F H +++A + + A + +QAA DA A +KS Sbjct: 377 RFAHDPMAGGHRMWQMAGLKAQRAQTDVNNKQAA--FDAAAKEKS 419
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 32.1 bits (73), Expect = 0.007 Identities = 14/48 (29%), Positives = 23/48 (47%) Query: 578 ILAPMHGIVVALQVEAGQPVSKGQPLLVLEAMKMEHVLKADRDGVIEA 625 I + IV + V+ G+ V KG LL L A+ E + +++A Sbjct: 99 IKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQA 146
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 30.7 bits (69), Expect = 0.002 Identities = 18/56 (32%), Positives = 24/56 (42%) Query: 134 LISALVVDEGARGRGVGTDLLVAAEERARAQGCSQLELSSSLKREGAHRFYLAQGY 189 LI + V + R +GVGT LL A E A+ L L + A FY + Sbjct: 91 LIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHF 146
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.8 bits (69), Expect = 0.005 Identities = 18/109 (16%), Positives = 36/109 (33%), Gaps = 6/109 (5%) Query: 93 ADGQEGERKTWQARWNEEAARLATAR-TKAEQEAREEEQRRQAEIDEVRDHAQEQLAQAQ 151 E K Q +E A + K E E +E + +++ ++ ++ QA+ Sbjct: 1085 VAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAE 1144 Query: 152 A----DAAAAGIESGRLRDKPAAW-QPEQVSAPAIPALPKEARQPNNLP 195 D E + A QP + ++ + E+ N Sbjct: 1145 PARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGN 1193
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 25.9 bits (57), Expect = 0.028 Identities = 7/44 (15%), Positives = 16/44 (36%), Gaps = 4/44 (9%) Query: 20 RKRLRQLREHLGLSRPKFAEILGIPPTTL----KNYELNYREIS 59 + ++ K A++LG+ TL + ++ S Sbjct: 438 YPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGVSVYRSS 481
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 120 bits (304), Expect = 8e-40 Identities = 52/88 (59%), Positives = 64/88 (72%) Query: 2 NKSQLIDKIADGADISKAAAGRALDAFIDAVGEALKEGDQVALVGFGTFAVRERAARSGR 61 NK LI K+A+ +++K + A+DA AV L +G++V L+GFG F VRERAAR GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGR 62 Query: 62 NPQTGATIEIAAGKVPAFKAGKALKDAV 89 NPQTG I+I A KVPAFKAGKALKDAV Sbjct: 63 NPQTGEEIKIKASKVPAFKAGKALKDAV 90
>BACINVASINB#Salmonella/Shigella invasin protein B signature. Length = 593 Score = 33.6 bits (76), Expect = 0.003 Identities = 46/174 (26%), Positives = 73/174 (41%), Gaps = 23/174 (13%) Query: 203 EIDLLQVEKRIRSRVKKQMEKSQREYYLNEQMKAIQKELGELEDSPDEFEALNRKIEEAG 262 ++ L Q+E R+ V + M +SQ+E + + K Q LGE +++ D +EA +K + A Sbjct: 98 DVSLSQLESRLA--VWQAMIESQKEMGI-QVSKEFQTALGEAQEATDLYEASIKKTDTAK 154 Query: 263 MPEDAREK----AQAELAKLKMMSPMSA-----------EATVVRSYVDWMVQVPWKARS 307 DA K AQ +L L P A EAT + +D KA + Sbjct: 155 SVYDAATKKLTQAQNKLQSLDPADPGYAQAEAAVEQAGKEATEAKEALDKATDATVKAGT 214 Query: 308 KVKKDLGKAQEVLD-----ADHYGLEKVKDRILEYLAVQARVNKLKGPILCLVG 356 K KA +L A+ +V + L+ AR+ L + +VG Sbjct: 215 DAKAKAEKADNILTKFQGTANAASQNQVSQGEQDNLSNVARLTMLMAMFIEIVG 268
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 107 bits (268), Expect = 9e-30 Identities = 73/256 (28%), Positives = 112/256 (43%), Gaps = 10/256 (3%) Query: 53 LSNKVAIITGASSGIGRASAILFAREGASIVVGARRQPELDLLVEEIRHEGGQAVSLAGD 112 + K+A ITGA+ GIG A A A +GA I +L+ +V ++ E A + D Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 113 VKNETYARALVDLALTRFGGLDIAFNNAGITGTPGSVPALELAQWQETLDTNLTSAFVGA 172 V++ + G +DI N AG+ PG + +L +W+ T N T F + Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVL-RPGLIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 173 KYQIPAMQARGGGSLIFTSTFVGHTLGLPGMAAYAASKAGLIGLTQVLAAEYGAQGVRVN 232 + M R GS++ + MAAYA+SKA + T+ L E +R N Sbjct: 125 RSVSKYMMDRRSGSIVTVGSNPAGVPRT-SMAAYASSKAAAVMFTKCLGLELAEYNIRCN 183 Query: 233 ALLPGGTDTPMGRAFTDTPESLAFVQNMHA--------LKRLAQPEEIARSALYLASDAS 284 + PG T+T M + V LK+LA+P +IA + L+L S + Sbjct: 184 IVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQA 243 Query: 285 SFTTGIALLADGGVSI 300 T L DGG ++ Sbjct: 244 GHITMHNLCVDGGATL 259
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 76.9 bits (189), Expect = 7e-19 Identities = 38/192 (19%), Positives = 66/192 (34%), Gaps = 4/192 (2%) Query: 65 DAPAKAAPAPAPTVQHVQKVQQVQKVPQKAKPLPTPKKPP---LKPVKKSVKPVVKPLKN 121 APA +V V + P P + P P PVV Sbjct: 39 QVIELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPK 98 Query: 122 RTPPVQPAKVMPVSSPQPPVTAPAPATTATATQASGGSTSQSPAHKAGGGAGNSAPIARD 181 P +P V V P+ V + + + S A A ++ + Sbjct: 99 PKPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTA-TAATSKPVTSVASGP 157 Query: 182 ARLNNPEPQYPYESRRRGEEGRVILNVRVTAEGTAASVEVDKSSGYRRLDMTARKTVSRW 241 L+ +PQYP ++ EG+V + VT +G +V++ + + + + RW Sbjct: 158 RALSRNQPQYPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAKPANMFEREVKNAMRRW 217 Query: 242 KFIPAKQNNVAV 253 ++ P K + V Sbjct: 218 RYEPGKPGSGIV 229
>SECFTRNLCASE#Bacterial translocase SecF protein signature. Length = 333 Score = 29.0 bits (65), Expect = 0.015 Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 6/80 (7%) Query: 158 IYHALLAIGAAGQSSLDKVAGP-VGEALIMTG-FGLAVALPAVLIYNFFVRRNRLRLAAL 215 + AL A+ A + + + GP V L+ T + L A ++ Y + + L A+ Sbjct: 124 VETALTAVDPALKITSFESVGPKVSGELVWTAVWSLLAATVVIMFYIWVRFEWQFALGAV 183 Query: 216 EEFGHDLFTLL----VTGFE 231 HD+ + V + Sbjct: 184 VALVHDVLLTVGLFAVLQLK 203
>ENTSNTHTASED#Enterobactin synthetase component D signature. Length = 234 Score = 95.9 bits (238), Expect = 5e-26 Identities = 67/202 (33%), Positives = 99/202 (49%), Gaps = 15/202 (7%) Query: 23 PLPGAAHLALQRVCFDPAAFTPACYDAAGMVLPASLQRAAPKRLGEFLAGRLAARRALHP 82 PLP A H L V FD ++F +D + L+ A KR E LAGR+AA AL Sbjct: 7 PLPFAGH-RLHIVDFDASSFRE--HDLLWLPHHDRLRSAGRKRKAEHLAGRIAAVHALRE 63 Query: 83 FGLGQQLVSIGAAREPCWPAGFEGSISHSLLQGRGMALCAVRPGQAGMGLDLEGWLAEGQ 142 G+ +G R+P WP G GSISH +A+ + + +G+D+E +++ Sbjct: 64 VGVRTVPG-MGDKRQPLWPDGLFGSISHC--ATTALAVISRQR----IGIDIEKIMSQHT 116 Query: 143 ASELWPGITSGEEWARLAAAARSVGLSRAEALTLIFSAKESLFKALYPRVGRYFDFLDAR 202 A+EL P I +E L A+ L ALTL FSAKES++KA + F A+ Sbjct: 117 ATELAPSIIDSDERQILQASLLPFPL----ALTLAFSAKESVYKA-FSDRVTLPGFNSAK 171 Query: 203 WLTMTEQTLTLELVGGLTPTLP 224 ++T ++L L+ T+ Sbjct: 172 VTSLTATHISLHLLPAFAATMA 193
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 73.8 bits (181), Expect = 4e-17 Identities = 58/276 (21%), Positives = 110/276 (39%), Gaps = 33/276 (11%) Query: 44 PKRVVVLSEIDLDSALTLGLQPVGTVNGRGQSTLPRYLLQQAGKEIAV-VGDLDNPNLEK 102 P R+V L + ++ L LG+ P G + ++ + + + VG PNLE Sbjct: 35 PNRIVALEWLPVELLLALGIVPYGVADTINYR---LWVSEPPLPDSVIDVGLRTEPNLEL 91 Query: 103 LIDLEPDLILTGQ---TKPELLALLKEIAPTVV-----TGNWGDSWKEIFNRSAHVLNRD 154 L +++P ++ PE+LA IAP ++ A +LN Sbjct: 92 LTEMKPSFMVWSAGYGPSPEMLA---RIAPGRGFNFSDGKQPLAMARKSLTEMADLLNLQ 148 Query: 155 AEAKTFLAQYDARLQQARSKLAKHQGERLSIVRW-NPKGPSYMHSGTFASSVVEEMGL-- 211 + A+T LAQY+ ++ + + K L + +P+ + +++E G+ Sbjct: 149 SAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGIPN 208 Query: 212 --TRPTHQIGDKTPHSPALSLESLNLL-DGDWLVIGTLSASGDAVDAMKQAEQTPAFQQL 268 T+ G S A+S++ L D D L D M TP +Q + Sbjct: 209 AWQGETNFWG-----STAVSIDRLAAYKDVDVLCFDH-----DNSKDMDALMATPLWQAM 258 Query: 269 GAIKSKRFGAVDGSLWTSTGGPQAALKVIDDVEQLL 304 +++ RF V ++W G +A+ + ++ + Sbjct: 259 PFVRAGRFQRVP-AVWF-YGATLSAMHFVRVLDNAI 292
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 52.7 bits (126), Expect = 1e-10 Identities = 20/98 (20%), Positives = 40/98 (40%), Gaps = 2/98 (2%) Query: 4 QPRQQRSQEVATRIEQATLALLREQGFAALNTNAIAARAGVGIKSLYHLYPNKEAIICRL 63 + +Q +QE I L L +QG ++ + IA AGV ++Y + +K + + Sbjct: 3 RKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI 62 Query: 64 AMDWLAAVCEAQAEI--RQQADDWPQTLAMLDQALDAL 99 + + E + E + D +L L++ Sbjct: 63 WELSESNIGELELEYQAKFPGDPLSVLREILIHVLEST 100
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 36.3 bits (84), Expect = 4e-04 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 6/56 (10%) Query: 559 AAGSDDAFRASQRISLAEMLAAYTINGARAVRQGEITGSIEAGKSADFIVLDRDLF 614 G +D FR + I A YTIN A A GS+E GK AD ++ + F Sbjct: 393 ETGDNDNFRVKRYI------AKYTINPAIAHGLSHEIGSLEVGKRADLVLWNPAFF 442
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 128 bits (323), Expect = 2e-38 Identities = 74/251 (29%), Positives = 121/251 (48%), Gaps = 14/251 (5%) Query: 3 KVALITGARGGIGSAITTALLAQGYRIIATHSSPNGA-AAHDWYGEQGFRPDQVRLLALD 61 K+A ITGA GIG A+ L +QG I A +P + + D Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEA---FPAD 65 Query: 62 VADTAMCRDTLGRLLQDEGRVDVLVNNAGITRDGAFKRMTPEQWFEVIHTNLCSLYNVTQ 121 V D+A + R+ ++ G +D+LVN AG+ R G ++ E+W N ++N ++ Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 122 PLFDAMCEQRDARIINISSVNGQKGQFGQVNYSAAKAGMLGFTKALAAEGARFGVTVNAI 181 + M ++R I+ + S + Y+++KA + FTK L E A + + N + Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 182 APGYTATPMVEAIRTD----------ILDSIKADIPMRRLAKPEEIAAAVVFLASEAGAY 231 +PG T T M ++ D L++ K IP+++LAKP +IA AV+FL S + Sbjct: 186 SPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGH 245 Query: 232 ITGETLAINGG 242 IT L ++GG Sbjct: 246 ITMHNLCVDGG 256
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 38.6 bits (90), Expect = 1e-05 Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 13/80 (16%) Query: 1 MKIALIGASGFVGTAILNEAVSRGHHVTAI-----VRDVS------KVAAHPQVTAVAVD 49 MK + GA+GF+G + + GH V I DVS ++ A P +D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 50 AQDSQALAKVLKGH--DRVI 67 D + + + +RV Sbjct: 61 LADREGMTDLFASGHFERVF 80
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 63.3 bits (154), Expect = 6e-13 Identities = 26/126 (20%), Positives = 50/126 (39%), Gaps = 5/126 (3%) Query: 121 QRIEVLVVDDSRTSRHRTMAQ-LRKQLLQVHEASHAREALAQLEQNPAIRLVLVDYYMPE 179 +LV DD R + Q L + V S+A + LV+ D MP+ Sbjct: 2 TGATILVADDDAAIR-TVLNQALSRAGYDVRITSNAATLWRWIAAGD-GDLVVTDVVMPD 59 Query: 180 IDGISLVRMLRERYSKQQLAIIGISVSDKRGLSARYLKQGANDFLNQPFEPEELQCRVSH 239 + L+ +++ + ++ + + A ++GA D+L +PF+ EL + Sbjct: 60 ENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKA--SEKGAYDYLPKPFDLTELIGIIGR 117 Query: 240 NLEALE 245 L + Sbjct: 118 ALAEPK 123 Score = 51.8 bits (124), Expect = 2e-09 Identities = 22/103 (21%), Positives = 46/103 (44%), Gaps = 4/103 (3%) Query: 2 KQKILIVEDSLTIRRMLIQAIAQQTGLEIDAFDTLEGA-RHCRGEEYVVALVDLTLPDAP 60 IL+ +D IR +L QA+++ G ++ R + + + D+ +PD Sbjct: 3 GATILVADDDAAIRTVLNQALSRA-GYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 61 SGEAVKVLLER--GLPVVILTADISEEKRAAWLEAGVLDYVMK 101 + + + + + LPV++++A + E G DY+ K Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPK 104
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 35.2 bits (81), Expect = 0.001 Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 4/107 (3%) Query: 181 RIDPLIGRDQELNRTIQVLCR--RRKNNPLLVGEAGVGKTAIAEGLAYRIVKGDVPEV-I 237 PL+GR + +VL R + ++ GE+G GK +A L + + P V I Sbjct: 135 DGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAI 194 Query: 238 AGSTIYSLDMGSLLAGTKYRGDFEKRLKVLLKQIERQEGAILFIDEI 284 + I + S L G + +G F + E+ EG LF+DEI Sbjct: 195 NMAAIPRDLIESELFGHE-KGAFTGAQTRSTGRFEQAEGGTLFLDEI 240
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 332 bits (854), Expect = e-111 Identities = 131/383 (34%), Positives = 196/383 (51%), Gaps = 29/383 (7%) Query: 154 CNQLTLIRDLGRSRRDQGVLRDSLRQMKGEGERLRQHEKLLGDQLVGQSAVIRGLREQIN 213 + L DL G ++ + E Q G LVG+SA ++ + + Sbjct: 99 YDYLPKPFDLTELIGIIGRALAEPKRRPSKLEDDSQD----GMPLVGRSAAMQEIYRVLA 154 Query: 214 QAGQHKLTVLIQGETGSGKEVVARLVHQCSDRANKPFVAINCAAIPENLIESELFGYQKG 273 + Q LT++I GE+G+GKE+VAR +H R N PFVAIN AAIP +LIESELFG++KG Sbjct: 155 RLMQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKG 214 Query: 274 AFSGALANKTGLVAQANGGTLFLDEVGDMPAAMQAKLLRVLETRSYRPLGAEQEYHSDFR 333 AF+GA TG QA GGTLFLDE+GDMP Q +LLRVL+ Y +G SD R Sbjct: 215 AFTGAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVR 274 Query: 334 LIAATHQPLTRHVEEGQFRADLYHRLCQCLLLIAPLREHMDDVPLLCQHFMAQFAAQDGK 393 ++AAT++ L + + +G FR DLY+RL L + PLR+ +D+P L +HF+ Q ++G Sbjct: 275 IVAATNKDLKQSINQGLFREDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQA-EKEGL 333 Query: 394 TLVGLQRKFLKQLQTYDFPGNVRELRNLLEVACAHTRHGE-------------------- 433 + ++ L+ ++ + +PGNVREL NL+ A Sbjct: 334 DVKRFDQEALELMKAHPWPGNVRELENLVRRLTALYPQDVITREIIENELRSEIPDSPIE 393 Query: 434 ----EVGLEALPPELRERVSALLPSSMDDYNHIRDLRRAMQQYEASVIEARLRHFQGNRM 489 G ++ + E + S D R + + E +I A L +GN++ Sbjct: 394 KAAARSGSLSISQAVEENMRQYFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQI 453 Query: 490 LVAESLNIPKRTLDHKCQKLEVN 512 A+ L + + TL K ++L V+ Sbjct: 454 KAADLLGLNRNTLRKKIRELGVS 476
>ARGDEIMINASE#Bacterial arginine deiminase signature. Length = 409 Score = 29.0 bits (65), Expect = 0.034 Identities = 11/58 (18%), Positives = 27/58 (46%), Gaps = 2/58 (3%) Query: 104 RLRAYLGAITPEQSLQQVLGNRPTEQLDEWLTSDEPVVPADDPRTLAADPLLALQQER 161 L+ Y ++T + + +++ TE+L + +S + +V + DP+ + R Sbjct: 108 LLKDYFSSLTIDNMISKMISGVVTEELKNYTSSLDDLVNGANL--FIIDPMPNVLFTR 163
>PF07201#Hypersensitivity response secretion protein HrpJ Length = 293 Score = 27.5 bits (61), Expect = 0.016 Identities = 10/51 (19%), Positives = 26/51 (50%), Gaps = 6/51 (11%) Query: 22 TLEQLEEGLEKLSAIVSERQQDEAAERQAREEHLR------KINEYAEMLK 66 TL+ + + E+++ + SER++ +R+ + R ++N+Y + Sbjct: 45 TLQSIADMAEEVTFVFSERKELSLDKRKLSDSQARVSDVEEQVNQYLSKVP 95
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 114 bits (286), Expect = 6e-37 Identities = 33/89 (37%), Positives = 55/89 (61%), Gaps = 1/89 (1%) Query: 2 TKSDLIEQLAASRMHMPAKDVEAAIKEILEQMASTLQNGDRIEIRGFGSFSLHYRAPRVG 61 K DLI ++A + KD AA+ + ++S L G+++++ GFG+F + RA R G Sbjct: 3 NKQDLIAKVAE-ATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKG 61 Query: 62 RNPKTGDKVELTGKYVPHFKPGKELRERV 90 RNP+TG+++++ VP FK GK L++ V Sbjct: 62 RNPQTGEEIKIKASKVPAFKAGKALKDAV 90
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 28.3 bits (63), Expect = 0.028 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 5/54 (9%) Query: 114 YHLAVRSDDPVEIRQWDDVRALGEEGIILINHGSGAI---ERLQALQGL--IID 162 + V S DP + + ++ L E G+I+I G G + ++G+ +ID Sbjct: 161 WRRVVPSPDPKGHVEAETIKKLVERGVIVIASGGGGVPVILEDGEIKGVEAVID 214
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 39.2 bits (91), Expect = 1e-05 Identities = 41/175 (23%), Positives = 58/175 (33%), Gaps = 23/175 (13%) Query: 6 TLLCLLCVSPALLAGTPTRIVSLTPHLTELLFTIGAGDRIVATDDASDY------PPEVK 59 + L + A P RIV+L ELL +G VA D +Y PP Sbjct: 19 SPLLWQMNTAHAAAIDPNRIVALEWLPVELLLALGIVPYGVA--DTINYRLWVSEPPLPD 76 Query: 60 RLPQVANYRSINLEALLAQKPDLIV--AWRSAQSRMLAPVEQLGIPVFYSEPTDFASLAT 117 + V NLE L KP +V A MLA + F A Sbjct: 77 SVIDVGLRTEPNLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARK 136 Query: 118 EMRVLGKTLG---VGQTANAEADAYL----ARLAALGQR------YGKPKHIKVF 159 + + L +T A+ + ++ R G R P+H+ VF Sbjct: 137 SLTEMADLLNLQSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVF 191
>FLAGELLIN#Flagellin signature. Length = 507 Score = 149 bits (377), Expect = 1e-43 Identities = 85/210 (40%), Positives = 120/210 (57%) Query: 2 AMYINTNTSSLNAQRNLMNTNKSLDTSYTRLASGLRINTAKDDAAGLQISNRLTSQINGL 61 A INTN+ SL Q NL + SL ++ RL+SGLRIN+AKDDAAG I+NR TS I GL Sbjct: 1 AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60 Query: 62 DQGNRNANDGISVAQTAEGAMDEVTSMLQRMRTLAQQSSNGSNNTDDRVALQQEYDQLIT 121 Q +RNANDGIS+AQT EGA++E+ + LQR+R L+ Q++NG+N+ D ++Q E Q + Sbjct: 61 TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120 Query: 122 EIDRISEDTTFGGQKLLDGKYKGTFQVGADAGQTISFKMTSAFSIKGIATATKGSATVAS 181 EIDR+S T F G K+L + QVGA+ G+TI+ + + + Sbjct: 121 EIDRVSNQTQFNGVKVLSQDNQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEA 180 Query: 182 TATADKYTVSKLTTAATTTSVSSIKTASGA 211 T K + +T T ++ Sbjct: 181 TVGDLKSSFKNVTGYDTYAVGANKYRVDVN 210 Score = 108 bits (271), Expect = 9e-29 Identities = 74/296 (25%), Positives = 122/296 (41%), Gaps = 5/296 (1%) Query: 5 INTNTSSLNAQRNLMNTNKSLDTSYTRLASGLRINTAKDDAAGLQISNRLTSQINGLDQG 64 +T ++ + + N L T + + + AG + + I G +G Sbjct: 216 TDTTAPTVPDKVYVNAANGQLTTDDAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEG 275 Query: 65 NRNANDGISVAQTAEGAMDEVTSMLQRMRTLAQQSSNGSNNTDDRVALQQEYDQLITEID 124 + G++ + D + + + A D + Sbjct: 276 DTFDYKGVTFTIDTKTGNDGNGKVSTTINGEKVTLTVADIT-----AGAANVDAATLQSS 330 Query: 125 RISEDTTFGGQKLLDGKYKGTFQVGADAGQTISFKMTSAFSIKGIATATKGSATVASTAT 184 + + GQ D K K +D + K S ++ G + + A Sbjct: 331 KNVYTSVVNGQFTFDDKTKNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAG 390 Query: 185 ADKYTVSKLTTAATTTSVSSIKTASGAQLAMANLDFMIKAVDSKRAELGAVQNRFDSTIR 244 + + +T + + +A++D + VD+ R+ LGA+QNRFDS I Sbjct: 391 KTMFIDKTASGVSTLINEDAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAIT 450 Query: 245 NQSNVSENLSAARSRIRDADFATETANLTKQNILQQAASSILAQANQRPQSALSLL 300 N N NL++ARSRI DAD+ATE +N++K ILQQA +S+LAQANQ PQ+ LSLL Sbjct: 451 NLGNTVTNLNSARSRIEDADYATEVSNMSKAQILQQAGTSVLAQANQVPQNVLSLL 506
>PF05272#Virulence-associated E family protein Length = 892 Score = 34.7 bits (79), Expect = 6e-04 Identities = 12/32 (37%), Positives = 17/32 (53%) Query: 35 IVFVGPSGCGKSTLLRMIAGLEDITSGELTIG 66 +V G G GKSTL+ + GL+ + IG Sbjct: 599 VVLEGTGGIGKSTLINTLVGLDFFSDTHFDIG 630
>MALTOSEBP#Maltose binding protein signature. Length = 396 Score = 476 bits (1226), Expect = e-170 Identities = 237/386 (61%), Positives = 292/386 (75%) Query: 8 SLIGLATLGVACSATAAIDEGQLTIWINGDKGYNGLAEVGKKFEAETGIKVTVAHPDQVE 67 +L L T+ + SA A I+EG+L IWINGDKGYNGLAEVGKKFE +TGIKVTV HPD++E Sbjct: 11 ALSALTTMMFSASALAKIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLE 70 Query: 68 VKFQQAAATGNGPDIFFWAHDRYGEWVKAGLLVPVTPNAATKAKFEQFAWDAMTVDGKTY 127 KF Q AATG+GPDI FWAHDR+G + ++GLL +TP+ A + K F WDA+ +GK Sbjct: 71 EKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLI 130 Query: 128 GYPVAVEAVSLIYNKDLLPEPPKTFEEIAKIDETLKKNGKRAIMWAYDTPYFSYPLVAAN 187 YP+AVEA+SLIYNKDLLP PPKT+EEI +D+ LK GK A+M+ PYF++PL+AA+ Sbjct: 131 AYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAAD 190 Query: 188 GGYAFKKTATGYDVKDTGVANAGAKAGVGYISEMIKSGHLEKGIDYGVMDAKFNKGEVAM 247 GGYAFK YD+KD GV NAGAKAG+ ++ ++IK+ H+ DY + +A FNKGE AM Sbjct: 191 GGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAM 250 Query: 248 MINGPWAWSNLDKSGIKYGVAPLPTLKGKPAKAFVGVLGATINAASPNKDLAIEFLENYL 307 INGPWAWSN+D S + YGV LPT KG+P+K FVGVL A INAASPNK+LA EFLENYL Sbjct: 251 TINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYL 310 Query: 308 LTDAGLAPVNADKPLGAVALKSFQKTLESDPHIKATMQNAQNGEPMPSVPEMSRFWSSFE 367 LTD GL VN DKPLGAVALKS+++ L DP I ATM+NAQ GE MP++P+MS FW + Sbjct: 311 LTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVR 370 Query: 368 TALKNVTSGRQSVDEALDTAAKRIVQ 393 TA+ N SGRQ+VDEAL A RI + Sbjct: 371 TAVINAASGRQTVDEALKDAQTRITK 396
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 56.4 bits (136), Expect = 6e-11 Identities = 74/370 (20%), Positives = 135/370 (36%), Gaps = 34/370 (9%) Query: 3 LALFALTLSAFAIGTTEFVIVGLIPTIAEQLNVSLPSA---GLLVSLYALGVAIGAPVLT 59 + L + L A IG +I+ ++P + L S G+L++LYAL APVL Sbjct: 9 VILSTVALDAVGIG----LIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLG 64 Query: 60 ALTGKVPRKWLLVGLMALFTAGNLLAWQAPGYESLIVARILTGLAHGVFFSVGSTIATGL 119 AL+ + R+ +L+ +A + AP L + RI+ G+ G+ IA Sbjct: 65 ALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADIT 124 Query: 120 VAKEKAASAIAIMFSGLTIALVTGVPLGTWIGQVFGWRETFLVVSLLGLVAMVGSLLLIP 179 E+A M + +V G LG +G F + L + + L+P Sbjct: 125 DGDERAR-HFGFMSACFGFGMVAGPVLGGLMGGF-SPHAPFFAAAALNGLNFLTGCFLLP 182 Query: 180 SNLPKGAASTLREQLSVLTKKPLLLVYAKTALGYGGAFTAFTFLAPILQQVS-------- 231 + R L PL + A A F+ ++ QV Sbjct: 183 E-----SHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFG 237 Query: 232 ----GFSAGAVSLILLVYGVSVAVGNIW-GGKLADKMGPLPALKLLFAGLALVLLVLTFT 286 + A + + L +G+ ++ G +A ++G AL L ++L F Sbjct: 238 EDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFA 297 Query: 287 APHP-VLAVLTVLVWGAFAFGNVPGLQVLVVKQAEQHTPRAVDVASGLNIAAFNVGIALG 345 ++ +L G +P LQ ++ +Q ++ G A ++ +G Sbjct: 298 TRGWMAFPIMVLLASGGIG---MPALQAMLSRQVDEERQGQ---LQGSLAALTSLTSIVG 351 Query: 346 SVIGGLVVEH 355 ++ + Sbjct: 352 PLLFTAIYAA 361
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 46.9 bits (111), Expect = 4e-09 Identities = 23/102 (22%), Positives = 39/102 (38%), Gaps = 9/102 (8%) Query: 64 LLAAIAAEGRLFCVAEQEGAVVGFLTARIDINETIPFLSKEPICRIGTVVVDEGRRSQGI 123 ++ + EG+ + E +G + R + N + E I V + R +G+ Sbjct: 56 DVSYVEEEGKAAFLYYLENNCIGRIKIRSNWNG---YALIEDI------AVAKDYRKKGV 106 Query: 124 GKALIAHCDEWGKAHGAHQIRLEVMSFNERAKALYEALGFKM 165 G AL+ EW K + + LE N A Y F + Sbjct: 107 GTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFII 148
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 34.1 bits (78), Expect = 3e-04 Identities = 12/43 (27%), Positives = 21/43 (48%) Query: 63 AALGGLAYKLYQDWQAQQSSPAQPTQPTQPLDTLQGNALDARA 105 AL +++ ++Q W+ ++ Q Q TQ T G+A D Sbjct: 10 IALLFVSFMIWQAWEQDKNPQPQAQQTTQTTTTAAGSAADQGV 52
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 51.0 bits (122), Expect = 4e-09 Identities = 42/182 (23%), Positives = 77/182 (42%), Gaps = 5/182 (2%) Query: 15 RSARIMTLACLIVFMAQMATTVYLPSLPVVMTDLAMTRQGAELSISLFVIGAALPVLFWG 74 R +I+ C++ F + + V SLP + D + F++ ++ +G Sbjct: 11 RHNQILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYG 70 Query: 75 AAADRYGRRLPLALSLLLFVGLSLLLATT-SQGPLLLILRTLQGVAAGGAAIIARILVRD 133 +D+ G + L +++ S++ S LL++ R +QG G AA A ++V Sbjct: 71 KLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGA--GAAAFPALVMVVV 128 Query: 134 HWHGDELARRLSVLSIAFITALGG--GQWIGGLISRYAHWQLGFVLMAGVGVLALLLMSS 191 + + R + I I A+G G IGG+I+ Y HW ++ + LM Sbjct: 129 ARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKL 188 Query: 192 LP 193 L Sbjct: 189 LK 190
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 36.4 bits (84), Expect = 2e-04 Identities = 25/131 (19%), Positives = 53/131 (40%), Gaps = 2/131 (1%) Query: 38 DIAEALGLGMDTLAWLTLLPLWLIGGGVLLTPALRSRTGPRQLLGAALLLLGMGSAMRFE 97 DIA + W+ + G + L + G ++LL +++ GS + F Sbjct: 39 DIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFV 98 Query: 98 AASGA-LLIASAALCGLGSALVQGVLPGLIKQAFA-QKVPLVMGIFSACMMGGGALGASL 155 S LLI + + G G+A ++ ++ + + G+ + + G +G ++ Sbjct: 99 GHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAI 158 Query: 156 TPQLAARLDWS 166 +A + WS Sbjct: 159 GGMIAHYIHWS 169
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 28.7 bits (64), Expect = 0.006 Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 6/79 (7%) Query: 33 TGMNGQQALAFTALNLPFGLAILLGMAMLAPLPTHWRLPGITLL-----LAGSALATLQL 87 TGM+ Q+ L+ ++ ++ LA L W +P +L + G LA Sbjct: 859 TGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLF 918 Query: 88 GGNWLNPLAIWSLHALLGL 106 + + L +GL Sbjct: 919 NQK-NDVYFMVGLLTTIGL 936
>FLGFLIJ#Flagellar FliJ protein signature. Length = 147 Score = 26.7 bits (58), Expect = 0.044 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%) Query: 123 WRLAQVSLTRWQALHGRPSRVALWPQSRFTPAPEMEDWAARHPWR 167 WR + L WQ L R S AL ++R +M+++A R R Sbjct: 101 WREKKQRLQAWQTLQERQSTAALLAENRLD-QKKMDEFAQRAAMR 144
>PF05272#Virulence-associated E family protein Length = 892 Score = 31.6 bits (71), Expect = 0.003 Identities = 9/21 (42%), Positives = 12/21 (57%) Query: 29 VLTLMGPSGCGKSSLLAALAG 49 + L G G GKS+L+ L G Sbjct: 598 SVVLEGTGGIGKSTLINTLVG 618
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 62.7 bits (152), Expect = 4e-14 Identities = 34/175 (19%), Positives = 65/175 (37%), Gaps = 8/175 (4%) Query: 41 MARP----ASFDREQVLEIALNAFWDTGFSNTGIAALVERMGLKPSSLYGAFSSKEGLFM 96 MAR A R+ +L++AL F G S+T + + + G+ ++Y F K LF Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60 Query: 97 EVLQRYSAQSLAQIEQILGST-ASPLAGVQALLDAVARDAIASEAHRGCLLVNTLLEIGR 155 E+ + + + PL+ ++ +L V + +E R L+ + Sbjct: 61 EIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTV-TEERRRLLMEIIFHKCEF 119 Query: 156 HHPLIQETASSHLAEVELR--VSAALRQAQVAGELAAGRDVDATAALLMTMVWGL 208 + + +E + L+ A L A A ++ + GL Sbjct: 120 VGEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGL 174
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 77.0 bits (189), Expect = 1e-19 Identities = 29/146 (19%), Positives = 52/146 (35%), Gaps = 8/146 (5%) Query: 6 TDKRRQILDAALALCAEDGLQGAATARIAKAAGVANGTLFHHFPSKEVLIQSLYQDIKLR 65 + R+ ILD AL L ++ G+ + IAKAAGV G ++ HF K L +++ + Sbjct: 10 QETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESN 69 Query: 66 LGAAITEADAALP--LKEQARHYWSQAMAWMQAHPHELKFVLGFFHSPLLA------RPL 117 +G E A P R + + FH + Sbjct: 70 IGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQA 129 Query: 118 RSQILSDTLRFLPRLLAQGQASGELM 143 + + ++ + + L + L Sbjct: 130 QRNLCLESYDRIEQTLKHCIEAKMLP 155
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.3 bits (65), Expect = 0.012 Identities = 9/20 (45%), Positives = 14/20 (70%) Query: 33 IEGPNGVGKTSLLRLLTGLS 52 +EG G+GK++L+ L GL Sbjct: 601 LEGTGGIGKSTLINTLVGLD 620
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 62.6 bits (152), Expect = 3e-13 Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 16/125 (12%) Query: 143 TVELSSGLLFGSGSAFMSTNADPVLNTLSSILKQV---DNYVRVRGYTDNQQINNEIFRS 199 L S +LF A + L+ L S L + D V V GYTD I ++ + Sbjct: 214 HFTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDR--IGSDAY-- 269 Query: 200 NWTLSAARAEAVLTALIAKGIAPQRLAYEAYGEFSPFTDNSTEQGR---------LQNRK 250 N LS RA++V+ LI+KGI +++ GE +P T N+ + + +R+ Sbjct: 270 NQGLSERRAQSVVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRR 329 Query: 251 VVVAI 255 V + + Sbjct: 330 VEIEV 334
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 61.4 bits (149), Expect = 2e-12 Identities = 25/135 (18%), Positives = 51/135 (37%), Gaps = 7/135 (5%) Query: 2 AVKVLVVDDSSFFRRRVSEIITQDPMLTVIDTAQNGREAVDKAIQLRPDVITMDIEMPVM 61 +LV DD + R +++ +++ N D++ D+ MP Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVR--ITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 62 DGISAVREIMAKCP-TPILMFSSLTHEGAKATLDALDAGALDFLPKKF--EDIARDKDEA 118 + + I P P+L+ S+ + A + GA D+LPK F ++ A Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSA--QNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRA 118 Query: 119 VRLLQQRVKEISRKR 133 + ++R ++ Sbjct: 119 LAEPKRRPSKLEDDS 133
>PF06580#Sensor histidine kinase Length = 349 Score = 46.8 bits (111), Expect = 2e-07 Identities = 19/105 (18%), Positives = 35/105 (33%), Gaps = 23/105 (21%) Query: 423 TLKKEIELVMV---------GEETDLDKNLVEALADPLVH------LVRNSCDHGVEMPD 467 +L E+ +V + + + A+ D V LV N HG+ Sbjct: 217 SLADELTVVDSYLQLASIQFEDRLQFENQINPAIMDVQVPPMLVQTLVENGIKHGIA--- 273 Query: 468 VREKAGKPRQGTITLSASQQGDHILLCIEDDGAGMDPEKLKSIAI 512 P+ G I L ++ + L +E+ G+ +S Sbjct: 274 -----QLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKESTGT 313
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 89.5 bits (222), Expect = 4e-24 Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 3/105 (2%) Query: 6 KILIVDDFSTMRRIIKNLLRDLGFNNTHEADDGNTALPMLKNGDFQFVVTDWNMPGMQGI 65 IL+ DD + +R ++ L G++ + T + GD VVTD MP Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 66 DLLKAIRVDDKLKHLPVLMVTAEAKREQIIEAAQAGVNGYIVKPF 110 DLL I+ LPVL+++A+ I+A++ G Y+ KPF Sbjct: 64 DLLPRIKKAR--PDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPF 106
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 350 bits (900), Expect = e-122 Identities = 106/347 (30%), Positives = 187/347 (53%), Gaps = 7/347 (2%) Query: 7 ERTEQPTGKRLQQAREKGQIARSKELGTASVLLAAVFGLLMVKESLAGAMVKVLTMGFTL 66 E+TEQPT K+++ AR+KGQ+A+SKE+ + ++++A L+ + + K++ + Sbjct: 4 EKTEQPTPKKIRDARKKGQVAKSKEVVSTALIVALSAMLMGLSDYYFEHFSKLML----I 59 Query: 67 DREQAFDP--NAMMTMLPALLRELLHPLGLLFMLVAIAAFVGNILMGGMNFSSEAMLPKW 124 EQ++ P A+ ++ +L E + L + A+ A +++ G S EA+ P Sbjct: 60 PAEQSYLPFSQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPDI 119 Query: 125 SKLSPLNGIKRMFGVQSLVELVKSIAKVVFISLFAWWMLSSQFNHLLNLSLEGYPGGIID 184 K++P+ G KR+F ++SLVE +KSI KVV +S+ W ++ LL L G Sbjct: 120 KKINPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITPL 179 Query: 185 ALDLLLWMLIILCCALIPIVAIDVPFQQWNHMRQLKMTKQEVKDEFKDSEGKPEVKGRIR 244 +L +++I + I D F+ + ++++LKM+K E+K E+K+ EG PE+K + R Sbjct: 180 LGQILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKRR 239 Query: 245 RLQMEMAMRRMMGDVPKADVVITNPTHYSVALKYDTAKPGSAPKVVAKGTDEIAMKIREI 304 + E+ R M +V ++ VV+ NPTH ++ + Y + P V K TD +R+I Sbjct: 240 QFHQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGE-TPLPLVTFKYTDAQVQTVRKI 298 Query: 305 AREYEIPVMPSPALTRAIYHATEIGHEIPEGLFAAVAQVLAYVYQLK 351 A E +P++ L RA+Y + H IP A A+VL ++ + Sbjct: 299 AEEEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLERQN 345
>TYPE3IMRPROT#Type III secretion system inner membrane R protein family signature. Length = 261 Score = 126 bits (319), Expect = 2e-37 Identities = 83/233 (35%), Positives = 132/233 (56%), Gaps = 1/233 (0%) Query: 1 MTYTTALIMEWLSSIVWPLARVSGLLMVMAVFGSRLTPARVRISLALALTLMIAPLLPPM 60 + T+ + WL+ WPL RV L+ + R P RV++ LA+ +T IAP LP Sbjct: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA- 60 Query: 61 PKIELFSVGSFLVLGQQLLIGVALGLMTQFLMESFVMAGQIIAMQTSLGFATLVDPMNGQ 120 + +FS + + QQ+LIG+ALG QF + AG+II +Q L FAT VDP + Sbjct: 61 NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 Query: 121 SAPVVGQFYLMLATLVFLAVDGHLIMLRMVVLSFDTLPVSDSGLSLPSIRDLIGFLGVMY 180 + PV+ + MLA L+FL +GHL ++ ++V +F TLP+ L+ + L +++ Sbjct: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 Query: 181 QASLVMALSAIVALLLINFAFGVMTRAAPQLNIFSIGFAVSMMSGLLILWLTI 233 L++AL I LL +N A G++ R APQL+IF IGF +++ G+ ++ + Sbjct: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALM 233
>TYPE3IMQPROT#Type III secretion system inner membrane Q protein family signature. Length = 86 Score = 52.8 bits (127), Expect = 5e-13 Identities = 21/73 (28%), Positives = 37/73 (50%) Query: 4 ETFIDVFREALWLVTIMVCAVILPSLCVGLLVAIFQAATSINEQTLSFLPRLIVTLFALG 63 + + +AL+LV I+ + + +GLLV +FQ T + EQTL F +L+ L Sbjct: 2 DDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLF 61 Query: 64 AGAHWGLQSLMDF 76 + W + L+ + Sbjct: 62 LLSGWYGEVLLSY 74
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 280 bits (719), Expect = 5e-98 Identities = 137/242 (56%), Positives = 182/242 (75%), Gaps = 3/242 (1%) Query: 13 LLVGLLSLLILCSPLALAQDGMSAVTIKTMADGSQEYSLTLQVLALMTALSFLPAIVIMM 72 LL LL L +PLA AQ + +T + + G Q +SL +Q L +T+L+F+PAI++MM Sbjct: 4 LLSVAPVLLWLITPLAFAQ--LPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMM 61 Query: 73 TSFTRIIIVLGILRQAIGLQQSPSNQVLIGIALFMSFFIMSPVLDRINNEALQPYLAETI 132 TSFTRIIIV G+LR A+G +P NQVL+G+ALF++FFIMSPV+D+I +A QP+ E I Sbjct: 62 TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKI 121 Query: 133 QAKEALEKAELPIHQFMLAQTRIKDLNTFMEIANV-QVDKPADVPLRVLIPAFVTSELKT 191 +EALEK P+ +FML QTR DL F +AN + P VP+R+L+PA+VTSELKT Sbjct: 122 SMQEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVTSELKT 181 Query: 192 AFQIGFMLFLPFLVIDLVVASILMAMGMMMLSPMLVSLPFKLMLFVMVDGWNLILGSLAN 251 AFQIGF +F+PFL+IDLV+AS+LMA+GMMM+ P ++LPFKLMLFV+VDGW L++GSLA Sbjct: 182 AFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQ 241 Query: 252 SF 253 SF Sbjct: 242 SF 243
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 53.5 bits (128), Expect = 5e-11 Identities = 24/111 (21%), Positives = 48/111 (43%), Gaps = 4/111 (3%) Query: 27 YRQLLESAATIAGRDGIAALSLNAVAYEAGVSKGGLLHHFPNKQALIFALFARLLAIMEE 86 + +L+ A + + G+++ SL +A AGV++G + HF +K L ++ + + E Sbjct: 13 RQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGE 72 Query: 87 AISALMAAD-KTAYGRFTRAYLHYLSAPELTDTQESRQLMVLSLAMPDEPV 136 A +H L + T+E R+L++ + E V Sbjct: 73 LELEYQAKFPGDPLSVLREILIHVLESTV---TEERRRLLMEIIFHKCEFV 120
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 812 bits (2098), Expect = 0.0 Identities = 305/1034 (29%), Positives = 517/1034 (50%), Gaps = 29/1034 (2%) Query: 3 LSDISVRRPLVAVVLSALLTVFGLVAFSKLTVREMPDVQTPSVSITTMYEGAAPAVMESQ 62 +++ +RRP+ A VL+ +L + G +A +L V + P + P+VS++ Y GA ++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 63 VTKPIEDQLSGISGIKNINSVT-RKGRSVITVEFKLGWNMVEGISDVRDAISRARPKLPD 121 VT+ IE ++GI + ++S + G IT+ F+ G + V++ + A P LP Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 122 EVDEPLVTKDNGNGDVAVWLNFSSTQMDRTA--MTDYANRVLVDPLSLVDGVSEVSLSGD 179 EV + ++ + + + F S T ++DY + D LS ++GV +V L G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 180 LTQVMYVRLRPADMAARGVTVADVQDALKRENIELPGGEIRN------NSMTMAVQIARL 233 + + L + +T DV + LK +N ++ G++ + ++ Sbjct: 181 QYAMR-IWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 234 YHTAADFQALQVRTATNGQSIYLADIADVEVGAKNEDSAYQRNGRESLGIGIVAQSTANP 293 + +F + +R ++G + L D+A VE+G +N + + NG+ + G+GI + AN Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 294 LAVAQGVEKKMAEMQRFLPEGAALEVDYDSTIFIKQAIDEVYETLAICAVLVVAVLYLFL 353 L A+ ++ K+AE+Q F P+G + YD+T F++ +I EV +TL +LV V+YLFL Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 354 GQGRTTLIPAITVPVSLISAFIGAWYLGFSINLITLLALILAIGLVVDDAIVVVENIHHH 413 R TLIP I VPV L+ F G+SIN +T+ ++LAIGL+VDDAIVVVEN+ Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 414 LQ-RGEQPLLAAWHGTREVGFAVIATTAVLVMVFVPIAFMDGMVGRLFTEFAILLSLAVL 472 + P A ++ A++ VL VF+P+AF G G ++ +F+I + A+ Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 473 FSSLIALTLTPAMGSWLMRSVDR-----PNRLTAALDRGLGWVETHYRRLLGWMLHHSRW 527 S L+AL LTPA+ + L++ V + HY +G +L + Sbjct: 480 LSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539 Query: 528 TPLVLVLCLGGIGALFAQLPTSLTPTEDRGVLYVFVKGAEGTSIERMKRNMQQVEAAIMP 587 L+ L + G+ LF +LP+S P ED+GV ++ G + ER ++ + QV + Sbjct: 540 YLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLK 599 Query: 588 LLGKGVVQAMSFSTPAFGRGGDQTGMAIIQLTDWAERD---ETATEFAKSLSGRLAGIPD 644 V + + +F GMA + L W ER+ +A L I D Sbjct: 600 NEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRD 659 Query: 645 VMIRTFQP------GFRGGSTAAVQFVLQGSDYAELYQQGLALKEAAAQS-GLMETPDLD 697 + F G G + G + L Q L AAQ + + + Sbjct: 660 GFVIPFNMPAIVELGTATGFDFELI-DQAGLGHDALTQARNQLLGMAAQHPASLVSVRPN 718 Query: 698 YAEKTPELQVTIERDRANQLGIPVSTVASSLQALLGGISQTTYVDRGEEYDVYLRANQRD 757 E T + ++ +++++A LG+ +S + ++ LGG ++DRG +Y++A+ + Sbjct: 719 GLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKF 778 Query: 758 FNGVSDLSRIYLKAANGEMVTLSTLATVKQVASPQRLNHYQRQKAVTLTADLAPGHTLGE 817 D+ ++Y+++ANGEMV S T V RL Y ++ + + APG + G+ Sbjct: 779 RMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGD 838 Query: 818 ALDYLDGWASANLPSGMTVDYAGESKDYRDNQGEMVMVFGLALLVVYLVLVAQFESMLTP 877 A+ ++ ++ LP+G+ D+ G S R + + + ++ +VV+L L A +ES P Sbjct: 839 AMALMEN-LASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIP 897 Query: 878 AVVMVTVPLGIFGGLLGLWLTGQEMSIYSQIGMIMLIGMVTKNGILIVEFINQLRQR-GE 936 VM+ VPLGI G LL L Q+ +Y +G++ IG+ KN ILIVEF L ++ G+ Sbjct: 898 VSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGK 957 Query: 937 GFDEAIIAGSVRRLRPILMTSLTAIIGAVPLMLSMGAGYESRMSVGTVVFFGLSLATLVT 996 G EA + RLRPILMTSL I+G +PL +S GAG ++ +VG V G+ ATL+ Sbjct: 958 GVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLA 1017 Query: 997 LLLVPAIYHLLAKR 1010 + VP + ++ + Sbjct: 1018 IFFVPVFFVVIRRC 1031
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 46.4 bits (110), Expect = 1e-07 Identities = 29/190 (15%), Positives = 62/190 (32%), Gaps = 17/190 (8%) Query: 98 LDAGKQQAELAEQSASVRDESRKLRDMRRLVARG--AITTSELEGQEATVAQAQARADAA 155 ++A + Q + E ++ +LV + +L + Sbjct: 262 VEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKN 321 Query: 156 KYELSLRTLLAPFDGSVS-LIDLSEGALVNSGDTLLHL-DELAKLRLDLAVPERYLSLLR 213 + + AP V L +EG +V + +TL+ + E L + V + + + Sbjct: 322 EERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFIN 381 Query: 214 PGMAVTATSSAWPDQSFRGVLETLDS----RVSNDTQNIKARVII---------PNPDGQ 260 G A+P + ++ + + + + + VII N + Sbjct: 382 VGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVIISIEENCLSTGNKNIP 441 Query: 261 LRPGMLLNVE 270 L GM + E Sbjct: 442 LSSGMAVTAE 451 Score = 42.5 bits (100), Expect = 2e-06 Identities = 27/151 (17%), Positives = 51/151 (33%), Gaps = 19/151 (12%) Query: 66 RSVVISPEVTGRIVKIAVRSGQQVKQGDVLIALDAGKQQAELAEQSASVRDE------SR 119 RS I P + +I V+ G+ V++GDVL+ L A +A+ + +S+ + Sbjct: 95 RSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQ 154 Query: 120 KLRDMRRLVARGAIT-------TSELEGQEATVAQ------AQARADAAKYELSLRTLLA 166 L L + + E + + + + + EL+L A Sbjct: 155 ILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRA 214 Query: 167 PFDGSVSLIDLSEGALVNSGDTLLHLDELAK 197 ++ I+ E L L Sbjct: 215 ERLTVLARINRYENLSRVEKSRLDDFSSLLH 245
>OUTRMMBRANEA#Outer membrane protein A signature. Length = 346 Score = 374 bits (961), Expect = e-132 Identities = 141/352 (40%), Positives = 194/352 (55%), Gaps = 25/352 (7%) Query: 4 MAPSLIAIAMAAMG----ATAAHAADDIYFGAGAGAAHFNGLNKIGGGGYAGTEDAAAAN 59 M + IAIA+A G A AA + Y GA G + ++ I G E+ A Sbjct: 1 MKKTAIAIAVALAGFATVAQAAPKDNTWYTGAKLGWSQYHDTGFINNNG-PTHENQLGAG 59 Query: 60 AFVGYNFTENFGTEFGYQYAGR----GNTDGLRYENQGATLSGIARLPLGGDFSAFAE-G 114 AF GY G E GY + GR G+ + Y+ QG L+ P+ D + G Sbjct: 60 AFGGYQVNPYVGFEMGYDWLGRMPYKGSVENGAYKAQGVQLTAKLGYPITDDLDIYTRLG 119 Query: 115 GAYW---AHTDGLGTS-DTKVSPLAGLGVTYKVNDALDLQARYRYMWDVADLHAGDAPDD 170 G W ++ G + DT VSP+ GV Y + + + Y++ ++ D H Sbjct: 120 GMVWRADTKSNVYGKNHDTGVSPVFAGGVEYAITPEIATRLEYQWTNNIGDAHT------ 173 Query: 171 VRYKSNQSVATLEAVYHPFRTSYVAPAPAPVVEEAPAPAPQVVEKNFALNSDVLFAFGKD 230 + + + + +L Y + APVV APAPAP+V K+F L SDVLF F K Sbjct: 174 IGTRPDNGMLSLGVSYR-----FGQGEAAPVVAPAPAPAPEVQTKHFTLKSDVLFNFNKA 228 Query: 231 SLKPEGVAALNGLYQQIVEFQPKDGNAVVVGYTDRIGSDAYNQKLSEARARTVANFLVSK 290 +LKPEG AAL+ LY Q+ PKDG+ VV+GYTDRIGSDAYNQ LSE RA++V ++L+SK Sbjct: 229 TLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSVVDYLISK 288 Query: 291 GMAASKVAVEGRGEANPVTGTKCNGVKAKAQLISCLAPDRRVEVRVSGVQEV 342 G+ A K++ G GE+NPVTG C+ VK +A LI CLAPDRRVE+ V G+++V Sbjct: 289 GIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEVKGIKDV 340
>OUTRMMBRANEA#Outer membrane protein A signature. Length = 346 Score = 402 bits (1035), Expect = e-143 Identities = 144/344 (41%), Positives = 192/344 (55%), Gaps = 21/344 (6%) Query: 5 MAPALIALAIAAMG-TSTAQAA---NDWYTGIGAGWAYGHD---LNDFGKDADKDATALS 57 M IA+A+A G + AQAA N WYTG GW+ HD +N+ G + A Sbjct: 1 MKKTAIAIAVALAGFATVAQAAPKDNTWYTGAKLGWSQYHDTGFINNNGPTHENQLGA-G 59 Query: 58 LFGGYNFNDNFGAELGYLYAG----KGGVDGVDFKTQGATLSGLARLPLGDIFSVFAEGG 113 FGGY N G E+GY + G KG V+ +K QG L+ P+ D ++ G Sbjct: 60 AFGGYQVNPYVGFEMGYDWLGRMPYKGSVENGAYKAQGVQLTAKLGYPITDDLDIYTRLG 119 Query: 114 AYF------NHVNGNGSSDNGTAPLAGLGVTAKLSDLIDLQARYRYMWNLGDEQKTWETN 167 ++V G + D G +P+ GV ++ I + Y++ N+GD T T Sbjct: 120 GMVWRADTKSNVYGK-NHDTGVSPVFAGGVEYAITPEIATRLEYQWTNNIGDAH-TIGTR 177 Query: 168 MSVATLELVMHPNRSTYVAPVAAPAPEPVPEPVVVDKNFALSSDVLFAFGKSTLKPEGVA 227 L L + R AP P P P V K+F L SDVLF F K+TLKPEG A Sbjct: 178 PDNGMLSLGV-SYRFGQGEAAPVVAPAPAPAPEVQTKHFTLKSDVLFNFNKATLKPEGQA 236 Query: 228 ALNTLYQQIVDVQPKDGSAVVVGYTDRIGSDAYNLKLSEARARTVADFLVGKGLPAGKVA 287 AL+ LY Q+ ++ PKDGS VV+GYTDRIGSDAYN LSE RA++V D+L+ KG+PA K++ Sbjct: 237 ALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSVVDYLISKGIPADKIS 296 Query: 288 IEGRGEANPVTGTQCNGIKAKAQLISCLAPDRRVEVRVTGVQQV 331 G GE+NPVTG C+ +K +A LI CLAPDRRVE+ V G++ V Sbjct: 297 ARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEVKGIKDV 340
>OUTRMMBRANEA#Outer membrane protein A signature. Length = 346 Score = 343 bits (882), Expect = e-120 Identities = 140/343 (40%), Positives = 188/343 (54%), Gaps = 27/343 (7%) Query: 10 IALALAATGAQAAP-DNDWYAGVGGGWAIAHDLG---DFGKDASKDATALSLFGGYNFTE 65 +ALA AT AQAAP DN WY G GW+ HD G + G A FGGY Sbjct: 10 VALAGFATVAQAAPKDNTWYTGAKLGWSQYHDTGFINNNGPTHENQLGA-GAFGGYQVNP 68 Query: 66 NLGAELGYLSTGDW----DVQGNDFSSQGATLSVIGRLPLGDIFSVFAEGGGYVYHVKSI 121 +G E+GY G V+ + +QG L+ P+ D ++ GG V+ + Sbjct: 69 YVGFEMGYDWLGRMPYKGSVENGAYKAQGVQLTAKLGYPITDDLDIYTRLGGMVWRADTK 128 Query: 122 NGG-----DNNLAPLAGLGLTAKLHDWVDIQARYRYMVRVGDDPDNDKVGSGTQRWVSDI 176 + D ++P+ G+ + + + Y++ +GD + T D Sbjct: 129 SNVYGKNHDTGVSPVFAGGVEYAITPEIATRLEYQWTNNIGD--------AHTIGTRPDN 180 Query: 177 STATLELVIHPNRSKPVEPAPAPMVVPPPPPAPEPVDQTFNLSSDVLFAFGKAELKPEGM 236 +L + + AP+V P P PAPE + F L SDVLF F KA LKPEG Sbjct: 181 GMLSLGVSYRF-----GQGEAAPVVAPAPAPAPEVQTKHFTLKSDVLFNFNKATLKPEGQ 235 Query: 237 QALESLYQQIADVKPKDGNAVVMGYTDRIGSDANNQALSEARASTVANFLIGKGLPADKV 296 AL+ LY Q++++ PKDG+ VV+GYTDRIGSDA NQ LSE RA +V ++LI KG+PADK+ Sbjct: 236 AALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSVVDYLISKGIPADKI 295 Query: 297 SIQGNGESNPVTGSQCDAIKARAALIDCLAPDRRVEVRVTGTQ 339 S +G GESNPVTG+ CD +K RAALIDCLAPDRRVE+ V G + Sbjct: 296 SARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEVKGIK 338
>CHANNELTSX#Nucleoside-specific channel-forming protein Tsx signature. Length = 294 Score = 30.4 bits (68), Expect = 8e-04 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 7/73 (9%) Query: 35 GDSTAEMLLKCGEPMLREELTR-------NEENQFGNLMQVKYGERWTYNFGKNEFMRFV 87 G+STA+ + G P+ E R N + FG + + + Y+ G+N+ Sbjct: 84 GNSTAKGIWNKGSPLFMEIEPRFSIDKLTNTDLSFGPFKEWYFANNYIYDMGRNDSQEQS 143 Query: 88 TVRNGVITDIENG 100 T G+ TDI+ G Sbjct: 144 TWYMGLGTDIDTG 156
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 52.6 bits (126), Expect = 4e-10 Identities = 46/197 (23%), Positives = 84/197 (42%), Gaps = 3/197 (1%) Query: 138 IRYGDWLLPGVIGMNLMFSGLFGVGF-VIVRYRKNGVLKRLRATPLSAAEFLCAQLLSRI 196 + Y +L G++ + M + F + R + + T L + + ++ Sbjct: 63 VSYTAFLAAGMVATSAMTAATFETIYAAFGRMEGQRTWEAMLYTQLRLGDIVLGEMAWAA 122 Query: 197 LITLVVSLLVFLVAYFLLGVPLLGSGWLLLLIALLGGASMASLGLLVAARIQNEELASGL 256 + + +VA L L + L +IAL G A ASLG++V A + + Sbjct: 123 TKAALAGAGIGVVAAALGYTQWLSLLYALPVIALTGLA-FASLGMVVTALAPSYDYFIFY 181 Query: 257 LNVISMPMMFLSGVWFSLEGAPAWLQQLAAWLPLSQIIAAARAVMLEGAGWAEVAAPLGW 316 ++ P++FLSG F ++ P Q A +LPLS I R +ML +V +G Sbjct: 182 QTLVITPILFLSGAVFPVDQLPIVFQTAARFLPLSHSIDLIRPIMLGHPV-VDVCQHVGA 240 Query: 317 VLLFTLCCITLGSALFK 333 + ++ + L +AL + Sbjct: 241 LCIYIVIPFFLSTALLR 257
>INFPOTNTIATR#Macrophage infectivity potentiator signature. Length = 233 Score = 145 bits (367), Expect = 8e-46 Identities = 77/200 (38%), Positives = 113/200 (56%), Gaps = 10/200 (5%) Query: 10 KASYGIGRNMGDQLAQQAFAGLDI--PALQQGLADALNGLEFAVSRDDINDA---FQV-I 63 K SY IG ++G Q G+DI L +G+ D ++G + ++ + + D FQ + Sbjct: 33 KLSYSIGADLGKNFKNQ---GIDINPDVLAKGMQDGMSGAQLILTEEQMKDVLSKFQKDL 89 Query: 64 TARMQEEQEAVAKAAAAEGEAFLADNAKRAEVKTTESGLQYEVLVEGNGAVPVAGQSVRV 123 A+ E A+ A+G+AFL+ N + + SGLQY+++ G GA P +V V Sbjct: 90 MAKRSAEFNKKAEENKAKGDAFLSANKSKPGIVVLPSGLQYKIIDAGTGAKPGKSDTVTV 149 Query: 124 HYHGTFTHGGVFDSSVARGQPAEFPVTGVIAGWVEALQLMPVGSKWKLYIPQDLAYGARG 183 Y GT G VFDS+ G+PA F V+ VI GW EALQLMP GS W++++P DLAYG R Sbjct: 150 EYTGTLIDGTVFDSTEKAGKPATFQVSQVIPGWTEALQLMPAGSTWEVFVPADLAYGPRS 209 Query: 184 AGS-IPPYSALVFEVELLDI 202 G I P L+F++ L+ + Sbjct: 210 VGGPIGPNETLIFKIHLISV 229
>THERMOLYSIN#Thermolysin metalloprotease (M4) family signature. Length = 544 Score = 28.1 bits (62), Expect = 0.045 Identities = 10/35 (28%), Positives = 20/35 (57%) Query: 124 TVIGHELTHVLAQHSNERLSRSQLTGLGLAAADIA 158 V+GHELTH + ++ + +++ + A +DI Sbjct: 366 DVVGHELTHAVTDYTAGLVYQNESGAINEAMSDIF 400
>PF06580#Sensor histidine kinase Length = 349 Score = 30.2 bits (68), Expect = 0.016 Identities = 22/106 (20%), Positives = 33/106 (31%), Gaps = 26/106 (24%) Query: 327 LVYNAIHY----TPAGRKITVEWRKQGAMALFAVQDEGEGIPPEHLARLTERFYRVDKAR 382 LV N I + P G KI ++ K V++ G Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKN---------------- 306 Query: 383 SRHTGGSGLGLAIVKHALSH---HDCQLDIESRVGLGSRFSFLIPG 425 +G GL V+ L + Q+ + + G LIPG Sbjct: 307 --TKESTGTGLQNVRERLQMLYGTEAQIKLSEKQG-KVNAMVLIPG 349
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 92.6 bits (230), Expect = 6e-24 Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 2/119 (1%) Query: 4 RILVVEDEAPIREMLCFVLEQKGYETVEAEDFADGLAKVREPYPELIVLDWMMPGGSGIQ 63 ILV +D+A IR +L L + GY+ + A + +L+V D +MP + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 64 FIKQLKQDEVTRQIPVVMLTARGEEEDKVRGLEAGADDYITKPFSPKELTARLHAVMRR 122 + ++K + +PV++++A+ ++ E GA DY+ KPF EL + + Sbjct: 65 LLPRIK--KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 261 bits (669), Expect = 3e-83 Identities = 106/316 (33%), Positives = 148/316 (46%), Gaps = 39/316 (12%) Query: 280 ISLLIEGETGSGKEHLVRELHGQSSRRAQPLVCVNCGALPAELVEAELFGYVGGAFSGAR 339 ++L+I GE+G+GKE + R LH RR P V +N A+P +L+E+ELFG+ GAF+GA Sbjct: 161 LTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGA- 219 Query: 340 SQGSQGYLRAAHGGILMLDEIGELPLLAQTRLLRVLQERAVTPVGSHRPEAVDFWLVSAS 399 S G A GG L LDEIG++P+ AQTRLLRVLQ+ T VG P D +V+A+ Sbjct: 220 QTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAAT 279 Query: 400 HRDLAAMVAAGTFREDLYYRICGWRQQLAPLRAWP---ARERQALISRLLAEMDPALRLT 456 ++DL + G FREDLYYR+ +L PLR + + + E R Sbjct: 280 NKDLKQSINQGLFREDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKEGLDVKRFD 339 Query: 457 DEAEGQLLAHPLPGNVRQLKQALEVACVLAEGQGWIEPAHLHLPTVAVAPAATMAVA--- 513 EA + AHP PGNVR+L+ + L I + + P + + A Sbjct: 340 QEALELMKAHPWPGNVRELENLVRRLTALYPQ-DVITREIIENELRSEIPDSPIEKAAAR 398 Query: 514 -------------------------------GSTLREQNRQRVQQTLTECDGNVSEAARR 542 L E + LT GN +AA Sbjct: 399 SGSLSISQAVEENMRQYFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADL 458 Query: 543 LGISRTTLYRALREAG 558 LG++R TL + +RE G Sbjct: 459 LGLNRNTLRKKIRELG 474
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 77.9 bits (192), Expect = 7e-19 Identities = 30/149 (20%), Positives = 65/149 (43%), Gaps = 3/149 (2%) Query: 7 LVIEDDERIGSILAELVSSTPGFSLLGRAESLTQADLMMRAAQPQLLLVDISLPDGSGLE 66 LV +DD I ++L + +S G+ + + + A L++ D+ +PD + + Sbjct: 7 LVADDDAAIRTVLNQALSRA-GYDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 67 WVNRLRSHNREAYVIMVTASCDVETIQQALNQGVQDYIIKPLRLFRIQQSLDEILTLHRR 126 + R++ + V++++A T +A +G DY+ KP L + + L +R Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 127 ICERGSLEQSDLDRLMGKVRPQGREVRDT 155 + + D L+G+ +E+ Sbjct: 125 RPSKLEDDSQDGMPLVGR-SAAMQEIYRV 152
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 67.2 bits (164), Expect = 3e-15 Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 3/116 (2%) Query: 3 SQFTIVIADDHPLFRGALYQAVHMAIDDAQLLEADSIDSLAHLLGEHPEVDLLLLDLKMP 62 + TI++ADD R L QA ++ + + +L + DL++ D+ MP Sbjct: 2 TGATILVADDDAAIRTVLNQA--LSRAGYDVRITSNAATLWRWIAAGD-GDLVVTDVVMP 58 Query: 63 GANGFSGLAHLRGQYPDLPIVVVSASEEPTIIQQVLRLGALGFIPKSAPMKELVNA 118 N F L ++ PDLP++V+SA + GA ++PK + EL+ Sbjct: 59 DENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGI 114
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 69.7 bits (170), Expect = 5e-17 Identities = 42/204 (20%), Positives = 77/204 (37%), Gaps = 21/204 (10%) Query: 3 KGRLTRDNILQTAFEQASQQGLESLTIGSLASACEMSKSGLFAHFQSRDNLQIAVLEYAA 62 + + TR +IL A SQQG+ S ++G +A A +++ ++ HF+ + +L + E + Sbjct: 8 EAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSE 67 Query: 63 EVFRERVIQPVRQQQHGSQRAKLTALLQAWLAW-----NQCFAGRCMFLDAWTSAQEGEV 117 E ++ + G + L +L L + +F + V Sbjct: 68 SNIGELELEYQ-AKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVV 126 Query: 118 QQAARRLVRFWLDYLARQVVQGQSEGEWHSDMDPWRAVYRLYGLY--------LADQVFN 169 QQA R L D + + + +D+ RA + G A Q F+ Sbjct: 127 QQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQSFD 186 Query: 170 ALDLCQDPARHFWPEVETLLDGWR 193 AR + V LL+ + Sbjct: 187 LKKE----ARDY---VAILLEMYL 203
>CHLAMIDIAOM6#Chlamydia cysteine-rich outer membrane protein 6 signature. Length = 547 Score = 28.1 bits (62), Expect = 0.015 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 4/39 (10%) Query: 110 PGDQLVLDVEFLKERRGIAKFTGVATVN--GEVVCTAEL 146 PG+ + VEF +RG + T +ATV+ G TA + Sbjct: 272 PGEHRTITVEFCPLKRG--RATNIATVSYCGGHKNTASV 308
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 28.3 bits (63), Expect = 0.049 Identities = 10/59 (16%), Positives = 25/59 (42%), Gaps = 1/59 (1%) Query: 70 TNALVLKDPYVGFARVAQLLDTTPQPATDIHPSAVIAADVQLGERVAIGANAVIESGVV 128 TNAL++ + +++ + A+I A+VQ + + +G ++ + Sbjct: 318 TNALIVTAAPDVMNDLERVIAQLDIRRPQVLVEAII-AEVQDADGLNLGIQWANKNAGM 375
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 29.4 bits (66), Expect = 0.013 Identities = 19/68 (27%), Positives = 25/68 (36%), Gaps = 14/68 (20%) Query: 120 AEAISQL-RAGKVVIFSAGTGNPFFTT-------------DSAACLRGIEIEADVVLKAT 165 AE I +L G +VI S G G P D A E+ AD+ + T Sbjct: 176 AETIKKLVERGVIVIASGGGGVPVILEDGEIKGVEAVIDKDLAGEKLAEEVNADIFMILT 235 Query: 166 KVDGVFTD 173 V+G Sbjct: 236 DVNGAALY 243
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 28.0 bits (62), Expect = 0.049 Identities = 13/67 (19%), Positives = 29/67 (43%), Gaps = 7/67 (10%) Query: 206 VFIGQSTRIYDRETGE--IHYGRVPAGSVVVSGSLPSKCGKYS----LYAAV-IVKKVDA 258 VF+ + G ++Y + G + + G+ ++ G Y+ L V ++++V Sbjct: 623 VFLSAGSANIYAGKGHDVVYYDKTDTGYLTIDGTKATEAGNYTVTRVLGGDVKVLQEVVK 682 Query: 259 KTRAKVG 265 + VG Sbjct: 683 EQEVSVG 689
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 28.7 bits (64), Expect = 0.047 Identities = 19/77 (24%), Positives = 35/77 (45%) Query: 298 QFSKTEVATITKVYGVIMTLVGAALGGVLVMRFGTLRILFLGALLTASTNLLFALLNEVG 357 Q S E+ ++ G + ++ +GG+LV R G L +L +G + + L + L E Sbjct: 288 QLSTAEIGSVIIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETT 347 Query: 358 HNLELLTLIISLDNLSA 374 + ++ L LS Sbjct: 348 SWFMTIIIVFVLGGLSF 364
>CHANNELTSX#Nucleoside-specific channel-forming protein Tsx signature. Length = 294 Score = 101 bits (252), Expect = 3e-27 Identities = 93/297 (31%), Positives = 145/297 (48%), Gaps = 27/297 (9%) Query: 6 KTLIAAGLLAAAATP--AFAADYSGDIHKNDYKWMQFNVMHTIDQRPFTTGAEDYNDTYF 63 KTL+AAG + A +T A AA+ + +D+ NV+ + R G + NDTY Sbjct: 3 KTLLAAGAVVALSTTFAAGAAENDKPQYLSDWWHQSVNVVGSYHTR---FGPQIRNDTYL 59 Query: 64 EMEFGGRSGLFDLYGYVDVFDIFDSRHSDK---HKGQNLFMKFAPRMSLDALTGKDLSFG 120 E E + FD YGY+D F + K +KG LFM+ PR S+D LT DLSFG Sbjct: 60 EYEAFAKKDWFDFYGYIDAPVFFGGNSTAKGIWNKGSPLFMEIEPRFSIDKLTNTDLSFG 119 Query: 121 PVQEVYIAS--LNNIGDNQMENM----IGLGADVQVPWFGKVGMNLYARHATENQFFTEE 174 P +E Y A+ + ++G N + +GLG D+ + +N+YA++ +N + Sbjct: 120 PFKEWYFANNYIYDMGRNDSQEQSTWYMGLGTDIDTGLPMSLSLNVYAKYQWQN-YGASN 178 Query: 175 EGEWNGYWFAMNWFKPFYTFSNGSFVSYQGY--LDYAFDL------DTHNRADRTSDNLA 226 E EW+GY F + +F P GS +SY G+ D+ DL D + + RTS+++A Sbjct: 179 ENEWDGYRFKVKYFVPLTDLWGGS-LSYIGFTNFDWGSDLGDDNFYDLNGKHARTSNSIA 237 Query: 227 TFHGIYWHSDRYAVGYGLKYFMDAYGTKDGSTAYDGT---PWKSSGFSHYFSVTYKF 280 + H + + + +YF + D + G +S+G+ YF V Y F Sbjct: 238 SSHILALNYAHWHYSIVARYFHNGGQWADDAKLNFGDGPFSVRSTGWGGYFVVGYNF 294
>PF07520#Virulence protein SrfB Length = 1041 Score = 31.9 bits (72), Expect = 0.003 Identities = 27/107 (25%), Positives = 42/107 (39%), Gaps = 8/107 (7%) Query: 112 RIFLPMLSAMTSDE----RDSVLGPCSGLW--IHGKAFSRTPHARFQPALQTPWFHIRSH 165 R+ L + +A + E R V G + + + K + T +P L W Sbjct: 497 RVILSLPTATSVQEQAMIRSRVSGALTLVKEMLGTKDGTSTIAVEGKPELLVDWDEASCT 556 Query: 166 HLVGLYDENRHAYILRRRLWQTMTAMMERHPDPAGAILPTLKQANQD 212 LV LY E + R + + + PDPAG P+L+ A D Sbjct: 557 QLVYLYSELTQKFDGRIDTF--LDLKGQPRPDPAGGESPSLRLACID 601
>SALSPVBPROT#Salmonella virulence plasmid 65kDa B protein signature. Length = 591 Score = 231 bits (591), Expect = 5e-68 Identities = 118/226 (52%), Positives = 156/226 (69%), Gaps = 1/226 (0%) Query: 702 MMPPPPPPVAATGEGKKSAKKWATVEISKADEALRYYSAQGYTLLNNYLRDRPYKQREAI 761 MMPPPPPP G + KWA VE SK +ALRYYSAQGY+++N YLR Y + +A Sbjct: 365 MMPPPPPPPMMGGNSSRPKSKWAIVEESKQIQALRYYSAQGYSVINKYLRGDDYPETQAK 424 Query: 762 DTLLSRSYLNDEPTSASEFDQAMKAYVADVEAGLAKLPASPDLDFVYRGLALDKPELAAL 821 +TLLSR YL+ S EF AM Y+ D+ GL+ LP + D VYRGL LDKP L+ + Sbjct: 425 ETLLSRDYLSTNEPSDEEFKNAMSVYINDIAEGLSSLPET-DHRVVYRGLKLDKPALSDV 483 Query: 822 KDQFTGVGNIIVEPGFMSTSPDKAWVNDTLLRIRLPAGHGGRLLGEAAHFKGEAEMLFPT 881 ++T +GNII++ FMSTSPDKAW+NDT+L I L GH GR+LG+ AHFKGEAEMLFP Sbjct: 484 LKEYTTIGNIIIDKAFMSTSPDKAWINDTILNIYLEKGHKGRILGDVAHFKGEAEMLFPP 543 Query: 882 QTRLRVDRVVSSMSGDFDSLLNTIPTSDNASDNRSRIKRLIEVSVL 927 T+L+++ +V+ S DF S L+ + SD+A+ + +RIKR+I + VL Sbjct: 544 NTKLKIESIVNCGSQDFASQLSKLRLSDDATADTNRIKRIINMRVL 589
>INTIMIN#Intimin signature. Length = 939 Score = 55.1 bits (132), Expect = 6e-10 Identities = 53/234 (22%), Positives = 87/234 (37%), Gaps = 27/234 (11%) Query: 207 PQSLQVTLAANPATTK---VVQLVTTTDSQPADNVSADLLTATVHDIEGNPMQGASVVWS 263 L +T+ +N V S AD A TATV G V ++ Sbjct: 541 NVLLTITVLSNGQVVDQVGVTDFTADKTSAKADGTEAITYTATVKK-NGVAQANVPVSFN 599 Query: 264 HGSTTATLGAATSVTDSNGLATVSLINTRAETVAVTARVQANSGDSGMTS--DANFALYP 321 S TA L A ++ T+ +G ATV+L + + V V+A+ MTS +AN ++ Sbjct: 600 IVSGTAVLSANSANTNGSGKATVTLKSDKPGQVVVSAKTA------EMTSALNANAVIFV 653 Query: 322 VLDTLAVGTNNQPANNKAL----NTIVATFKDL-DGAVLANVPIT-----VQFTADKSTV 371 T A T + A+ + I T K + ++N +T + + Sbjct: 654 D-QTKASITEIKADKTTAVANGQDAITYTVKVMKGDKPVSNQEVTFTTTLGKLSNSTEKT 712 Query: 372 TFDNESPWTTTTNDAGAVIVSLR----NNVVENVEVTLYATNSSTVQKVASVNF 421 + + T T+ G +VS R V+ EV + T + + V Sbjct: 713 DTNGYAKVTLTSTTPGKSLVSARVSDVAVDVKAPEVEFFTTLTIDDGNIEIVGT 766 Score = 52.8 bits (126), Expect = 3e-09 Identities = 69/358 (19%), Positives = 127/358 (35%), Gaps = 34/358 (9%) Query: 120 FSANKSTIVADGVDNAVLTLTLKDDNQAPVTGISDRVALGYSGVDTDVISLTENDLGNGI 179 F+A+K++ ADG + T T+K + A SG + + + N G+G Sbjct: 563 FTADKTSAKADGTEAITYTATVKKNGVAQAN--VPVSFNIVSGT-AVLSANSANTNGSGK 619 Query: 180 YEYILTGTKSGVVTLTPQLDGAPLTTIPQSLQVTLAANPATTKVVQLVTTTDSQPADNVS 239 L K G V ++ A + +L TK D A Sbjct: 620 ATVTLKSDKPGQVVVS-----AKTAEMTSALNANAVIFVDQTKASITEIKADKTTAVANG 674 Query: 240 ADLLTATVHDIE-GNPMQGASVVWSHGSTTATLGAATSVTDSNGLATVSLINTRAETVAV 298 D +T TV ++ P+ V ++ +T L +T TD+NG A V+L +T V Sbjct: 675 QDAITYTVKVMKGDKPVSNQEVTFT--TTLGKLSNSTEKTDTNGYAKVTLTSTTPGKSLV 732 Query: 299 TARVQANSGDSGMTSDANFALYPVLDTLAVGTNNQPANNKALNTIVATFKDLDGAVLANV 358 +ARV ++ + F +D + L L Sbjct: 733 SARV-SDVAVDVKAPEVEFFTTLTID-----------DGNIEIVGTGVKGKLPTVWLQYG 780 Query: 359 PITVQFTADKSTVTFDNESPWTTTTNDAGAVIVSLRNNVVENVEVTLYATNSSTVQKVAS 418 + ++ + T+ + +P + + + + + E T+ +S + Sbjct: 781 QVNLKASGGNGKYTWRSANPAIASVDASSGQV-----TLKEKGTTTISVISSDN----QT 831 Query: 419 VNFTELMISRFLKPDPAT-MNWLDADNYCNNIGRRLPTVD-ELRALFVEVSPSFGQNY 474 +T + + P+ + + + DA N C N G +LP+ EL +F + Y Sbjct: 832 ATYTIATPNSLIVPNMSKRVTYNDAVNTCKNFGGKLPSSQNELENVFKAWGAANKYEY 889
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 29.7 bits (67), Expect = 0.009 Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 18/92 (19%) Query: 133 DPNEVDAVEIVIAATDAALAGNPIVSTELRAKVTTSAGNIGTATDYTYQWMIEDS----- 187 +P+ V I++ +AG + T AG + + + IE++ Sbjct: 103 NPDMQPGVTIIVGPGTEVIAGEGKIVT---------AGGMDSHIHFICPQQIEEALMSGL 153 Query: 188 ---VGAGTYSPIAGVTSETYTPGKDDQKRKLQ 216 +G GT P G + T TPG R ++ Sbjct: 154 TCMLGGGT-GPAHGTLATTCTPGPWHIARMIE 184
>INTIMIN#Intimin signature. Length = 939 Score = 295 bits (756), Expect = 3e-88 Identities = 195/848 (22%), Positives = 327/848 (38%), Gaps = 103/848 (12%) Query: 33 LFTFASEQPELIRYLIKKGDTLDSVSRQFGVVPHQLLTLNRHLKLDAPYLVV---GETIN 89 L T S Q L Y +K G+T+ +S+ + + +LN+HL ++ G+ I Sbjct: 53 LLTHNSYQNRLF-YTLKTGETVADLSKSQDINLSTIWSLNKHLYSSESEMMKAEPGQQII 111 Query: 90 VPRPQ------TLPILVSENPLYLKENTESHINVEQKVAQHVTRLGQALTALEEGREAGF 143 +P + LP+L S PL H N K++ VT+ + + + + + Sbjct: 112 LPLKKLPFEYSALPLLGSA-PLVAAGGVAGHTNKLTKMSPDVTK-----SNMTDDKALNY 165 Query: 144 ENESEIVKGARRAQRNSIAASGEQVPTSASRYGSEQEVQYWRQQLATQFEEEANAYAASL 203 + G++ R+ + + + ++Q W Sbjct: 166 AAQQAASLGSQLQSRSLNGDYAKDTALGIAGNQASSQLQAW------------------- 206 Query: 204 LGAMGTARTRVTLDDDFNMVTAEADLLLPLAEEQQTLLFTQFGLRRNGQDRTIANLGVGQ 263 L GTA + ++F+ + D LLP + ++ L F Q G R R ANLG GQ Sbjct: 207 LQHYGTAEVNLQSGNNFD--GSSLDFLLPFYDSEKMLAFGQVGARYI-DSRFTANLGAGQ 263 Query: 264 RHFLDRWMLGYNLFADYDLTNRHWRAGVGAEAWRDYLKLGANFYTPLSSWRDSPRFEGME 323 R FL MLGYN+F D D + + R G+G E WRDY K N Y +S W +S + + Sbjct: 264 RFFLPENMLGYNVFIDQDFSGDNTRLGIGGEYWRDYFKSSVNGYFRMSGWHESYNKKDYD 323 Query: 324 ERAARGMDVRLEAYLPAYPQWSASLTAEQYLGERVGLLDADQLERDPHAITAGLHYNPFP 383 ER A G D+R YLP+YP A L EQY G+ V L ++D+L+ +P A T G++Y P P Sbjct: 324 ERPANGFDIRFNGYLPSYPALGAKLMYEQYYGDNVALFNSDKLQSNPGAATVGVNYTPIP 383 Query: 384 LLKMDVEQVEASGRQHDTRFTLGLEWKLGATLWDMLNPSSVD--KSLAGMRHDLIERNND 441 L+ M ++ +G ++D +++ ++ + P V+ ++L+G R+DL++RNN+ Sbjct: 384 LVTMGIDYRHGTGNENDLLYSMQFRYQFDKPWSQQIEPQYVNELRTLSGSRYDLVQRNNN 443 Query: 442 MVLEYRDKVLLKASLNDQYSAVEGQALTLTLNIQHSRQIASIQWLGDVLGLSG---LSPA 498 ++LEY+ + +L ++ + E + L ++ + I W L G Sbjct: 444 IILEYKKQDILSLNIPHDINGTERSTQKIQLIVKSKYGLDRIVWDDSALRSQGGQIQHSG 503 Query: 499 DTAGQDKRALTLPSLPTYRIGQSNQYPVVAIVTDIDGHEA--IAEGVVAVSEDSGLQPAI 556 + QD +A+ LP Y G SN Y V A D +G+ + + + +S + Sbjct: 504 SQSAQDYQAI----LPAYVQGGSNVYKVTARAYDRNGNSSNNVLLTITVLSNGQVVDQVG 559 Query: 557 QLAEHFVQLLPGAHYQVDWGVVDPRQKPAKARNGIPIESI---------EGDVEADRDGY 607 + A +K A+ +P+ + G Sbjct: 560 VTDFTADKTSAKADGTEAITYTATVKKNGVAQANVPVSFNIVSGTAVLSANSANTNGSG- 618 Query: 608 QYRYRLTFQGPGQVLTGRELVAPGQPNPGTRYRLDVE-VIFPSGHVARDSMEFEFIDDAT 666 + L PGQV+ L+ VIF E + Sbjct: 619 KATVTLKSDKPGQVVV-------SAKTAEMTSALNANAVIFVDQ-TKASITEIKADKTTA 670 Query: 667 VPGAP---TLTAADSNGDDKPEVTGKAEPESTVTITWPDGSTSTTTADVDGNYTLEAPTV 723 V T T GD + E T T+ ST T + TL + T Sbjct: 671 VANGQDAITYTVKVMKGD---KPVSNQEVTFTTTLGKLSNSTEKTDTNGYAKVTLTSTTP 727 Query: 724 QGSGTITATATDKSGNTGPATSVNYIDSTVPGAPTLAATDSNSDNKPEVSGKAEPDSTVT 783 G ++A +D A V + + D E+ G T Sbjct: 728 -GKSLVSARVSD-VAVDVKAPEVEFFTTLTI-----------DDGNIEIVGTGVKGKLPT 774 Query: 784 ITWPDGTTSTTAADVDGNYTLEA----------------PTVQGSGTITATATDKSGNTG 827 + G + A+ +G YT + +G+ TI+ ++D T Sbjct: 775 VWLQYGQVNLKASGGNGKYTWRSANPAIASVDASSGQVTLKEKGTTTISVISSDNQTATY 834 Query: 828 PASSVNYL 835 ++ N L Sbjct: 835 TIATPNSL 842
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 81.8 bits (202), Expect = 7e-20 Identities = 52/216 (24%), Positives = 89/216 (41%), Gaps = 32/216 (14%) Query: 1 MQIIITGGGGFLGQKLARALL---HSSL------PFSELLLVDIQAPPALADPRVRCLQA 51 M+ ++TG GF+G +++ LL H + + ++ L + LA P + + Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARL-ELLAQPGFQFHKI 59 Query: 52 DLT-APGVAESLISERTTVVYHLAA-------IVSSHAEQDFDLGWQVNLDTTRSLLEAC 103 DL G+ + S V+ + + HA D NL ++LE C Sbjct: 60 DLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYAD------SNLTGFLNILEGC 113 Query: 104 RHARPGIRFVFTSSLAVYGG--PLPELVNDGTALTPTSSYGTQKAMGELLVNDYSRKGYV 161 RH + ++ SS +VYG +P +D P S Y K EL+ + YS + Sbjct: 114 RHNKIQ-HLLYASSSSVYGLNRKMPFSTDDSVD-HPVSLYAATKKANELMAHTYSHLYGL 171 Query: 162 DGLALRLPTICVRPGKPNRAASSFVSSIIREPLQGE 197 LR T+ G+P+ A F ++ L+G+ Sbjct: 172 PATGLRFFTVYGPWGRPDMALFKFTKAM----LEGK 203
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 72.8 bits (178), Expect = 3e-17 Identities = 47/185 (25%), Positives = 75/185 (40%), Gaps = 7/185 (3%) Query: 3 RFVLITGCSSGIGLAAAKALGQHGYTVIASARKAEDVAQLRQLGLL------AVELDLAN 56 + ITG + GIG A A+ L G + A E + ++ A D+ + Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 57 EASIERGAAEAQALAGGRLYGLFNNGAYGQPGALEDLPTQALREQFDINLFGWHHLIRQL 116 A+I+ A + G + L N +PG + L + F +N G + R + Sbjct: 69 SAAIDEITARIEREMG-PIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSV 127 Query: 117 LPAMLAAGEGRIVQNSSVLGLVAMKFRGAYNASKFALEGYTDTLRLELAGSGVQISLIEP 176 M+ G IV S V AY +SK A +T L LELA ++ +++ P Sbjct: 128 SKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSP 187 Query: 177 GPIDT 181 G +T Sbjct: 188 GSTET 192
>PF06580#Sensor histidine kinase Length = 349 Score = 41.4 bits (97), Expect = 9e-06 Identities = 24/137 (17%), Positives = 42/137 (30%), Gaps = 51/137 (37%) Query: 446 LMHLVRNAMDHGIEPAERRVAACKPARGTLTLNAYHDSGSIVIEIQDDGAGLNKARILQK 505 + LV N + HGI P G + L D+G++ +E+++ G+ K Sbjct: 260 VQTLVENGIKHGIAQ--------LPQGGKILLKGTKDNGTVTLEVENTGSLALK------ 305 Query: 506 AQERGLVTTNATLTDQEIYQLIFEPGFSTAEAITNLSGRGVGMDVVKRNIQALRG---SV 562 G G+ V+ +Q L G + Sbjct: 306 ---------------------------------NTKESTGTGLQNVRERLQMLYGTEAQI 332 Query: 563 ELDSKPGLGTRVQIRLP 579 +L K G + +P Sbjct: 333 KLSEKQG-KVNAMVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 81.8 bits (202), Expect = 3e-19 Identities = 33/173 (19%), Positives = 65/173 (37%), Gaps = 19/173 (10%) Query: 1 MKQIKVMLVDDSAVVRQVLQAILEQEP-DIKVIATASDPLFALEKLKKEWPDVIVLDVEM 59 M +++ DD A +R VL L + D+++ + A+ + D++V DV M Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAAT---LWRWIAAGDGDLVVTDVVM 57 Query: 60 PRMDGITFLTKIMAEHP-TPVVICSSLTEKGAETTLQAMAAGAVDIITKPTVGLKSFLQE 118 P + L +I P PV++ S+ T ++A GA D + KP Sbjct: 58 PDENAFDLLPRIKKARPDLPVLVMSAQNT--FMTAIKASEKGAYDYLPKPF--------- 106 Query: 119 SAQELAMAVRAAAQANVRRLAKVPAPSVAPKLNADAIMPAASQHAMAQTTERI 171 +L + +A + + + +A+ + + R+ Sbjct: 107 ---DLTELIGIIGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARL 156
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 63.7 bits (155), Expect = 2e-12 Identities = 22/112 (19%), Positives = 44/112 (39%), Gaps = 2/112 (1%) Query: 910 RLLVVEDHHLNQVLVQRQLKQLNLQCDLAENGRQALAMLTFHRYDLILCDCQMPVMDGYE 969 +LV +D + ++ + L + + N + DL++ D MP + ++ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 970 FTRRVRATEGLAQLPIIAMTANVLPEQAQRCLAAGMNDVLGKPVLMDGLRQM 1021 R++ LP++ M+A A + G D L KP + L + Sbjct: 65 LLPRIKKAR--PDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGI 114
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 52.5 bits (126), Expect = 2e-10 Identities = 26/126 (20%), Positives = 58/126 (46%), Gaps = 6/126 (4%) Query: 3 SKIILADDHPLILTGIRSLIAQHQAGCEIVAEAHQVSELFKTLQQHHCDLLITDFSMPGD 62 + I++ADD I T + +++ AG ++ ++ + L++ + DL++TD MP + Sbjct: 4 ATILVADDDAAIRTVLNQALSR--AGYDVRITSN-AATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 63 SRSDGLAMIQSLKRNYPQLSIIVLTQIQNAGILRALLQLGVSGILLKKAVISELSDAIHH 122 + ++ +K+ P L ++V++ + G L K ++EL I Sbjct: 61 ---NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117 Query: 123 VLSGQE 128 L+ + Sbjct: 118 ALAEPK 123
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 52.9 bits (127), Expect = 5e-09 Identities = 113/739 (15%), Positives = 227/739 (30%), Gaps = 118/739 (15%) Query: 146 ALPEGGSYGALLRHQLNLSQGE----GEQRSGRYNLTAQGSMGEWSPLLEGELSQSGDGQ 201 L + G LL + + + + G NL + ++G W S + Sbjct: 176 ELWDPGINAGLLNYNFSGNSVQNRIGGNSHYAYLNLQSGLNIGAWRLRDNTTWSYNSSDS 235 Query: 202 GTLHHI----QQLYAEHEGAGRFYRLGYFSPYAQGLVRQPALFGGRTPTVLGVMLGDSDT 257 + + E + RL Y QG + F G G L D Sbjct: 236 SSGSKNKWQHINTWLERDIIPLRSRLTLGDGYTQGDI-----FDGIN--FRGAQLASDDN 288 Query: 258 LL--IEQGQASA-TPVYVTPSRPGMVEIYRDGQLINSQQVIAGLQALDTRVLPAGIYEVE 314 +L ++G A + ++ V I ++G I + V G ++ +++ Sbjct: 289 MLPDSQRGFAPVIHGIARGTAQ---VTIKQNGYDIYNSTVPPGPFTINDIYAAGNSGDLQ 345 Query: 315 LRILE-DGQVTERRRETI--YKPMNWRNPDETWRFNLFAGQQTRLLSNWDE--------- 362 + I E DG + T+ + R+++ AG+ + ++ Sbjct: 346 VTIKEADGST---QIFTVPYSSVPLLQREG-HTRYSITAGEYRSGNAQQEKPRFFQSTLL 401 Query: 363 ---SDVSSLSSGVMV-NHLLAPSVIVG---------------ASSQYIDERWQNGLSADW 403 ++ G + + A + +G A+S D+ +G S + Sbjct: 402 HGLPAGWTIYGGTQLADRYRAFNFGIGKNMGALGALSVDMTQANSTLPDDSQHDGQSVRF 461 Query: 404 GLTEQWRLLGNLMTTQG---VGHGF-----DLQLLHHYGSGSVVLGHQQQYLSQSEAPDN 455 + G + G G+ + + G Q ++ + Sbjct: 462 LYNKSLNESGTNIQLVGYRYSTSGYFNFADTTYSRMNGYNIETQDGVIQVKPKFTDYYNL 521 Query: 456 T----TQSTLSLQQRLSDSHSASLYLSHQPGYGAGAD-----LGWRYNGELFSQNMSWSL 506 + L++ Q+L + + L SHQ +G G E + +S+SL Sbjct: 522 AYNKRGKLQLTVTQQLGRTSTLYLSGSHQTYWGTSNVDEQFQAGLNTAFEDINWTLSYSL 581 Query: 507 TVFDRPGSISTAYARDRGGMLSLSMNLGGERSLLAIGIGSRTSRSGGQER---------- 556 T + RD+ L++++ + S S Sbjct: 582 T------KNAWQKGRDQMLALNVNIPFSHWLRSDSKSQWRHASASYSMSHDLNGRMTNLA 635 Query: 557 --NGSLSYQQLLEWGALQSVGASLTSDSYGVGTAGYARFEGQQLSGDVHLQSSSYNQAVS 614 G+L L + G + D G+ GYA + G+ ++ S + Sbjct: 636 GVYGTLLEDNNLSYSV--QTGYAGGGDGNS-GSTGYATLNYRGGYGNANIGYSHSDDIKQ 692 Query: 615 GGLNLDSTMALGNDGSLAITGQPQGYEAGMIVDVESDMPELTLRADDEQGRYTVLKPGRN 674 + + +G GQP + ++V D + T ++ Sbjct: 693 LYYGVSGGVLAHANGVTL--GQPLN-DTVVLVKAPG-------AKDAKVENQTGVRTDWR 742 Query: 675 ---LVP-VTAYRRSVVQLDLAG--HDAPSMNIRPNVLPYHLNKGGVAYHKVNVMKTVTVI 728 ++P T YR + V LD + N NV+P +G + + + ++ Sbjct: 743 GYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVPT---RGAIVRAEFKARVGIKLL 799 Query: 729 GRLLDGEGSPIKGAMVINHAGRTVSEA--DGFFAVEMSEHNPSLQVE--HHGGQRCDVSL 784 L GAMV + + ++ +G + +QV+ C + Sbjct: 800 MTLTHNNKPLPFGAMVTSESSQSSGIVADNGQVYLSGMPLAGKVQVKWGEEENAHCVANY 859 Query: 785 DMSRVERQQEVLLLGDLTC 803 + +QQ + L C Sbjct: 860 QLPPESQQQLLTQL-SAEC 877
>MICOLLPTASE#Microbial collagenase metalloprotease (M9) signature. Length = 1104 Score = 48.2 bits (114), Expect = 9e-08 Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 11/97 (11%) Query: 538 GGGTNLPPVVSISGPSEALGGATVLLSGQGSSDPEGKPLSYAWTLPAGASASDLTQSTLS 597 N P I S + + G S D +G+ +Y W G +++ Sbjct: 768 DVHVNKEPKAVIKSDSSVIVEEEINFDGTESKDEDGEIKAYEWDFGDGEKSNEAK----- 822 Query: 598 AILPPTPTSDT--RYGFVLKVTDDKGLSRSATHEILI 632 T + Y L VTD+ G + + +I + Sbjct: 823 ----ATHKYNKTGEYEVKLTVTDNNGGINTESKKIKV 855
>MICOLLPTASE#Microbial collagenase metalloprotease (M9) signature. Length = 1104 Score = 46.2 bits (109), Expect = 5e-07 Identities = 44/199 (22%), Positives = 70/199 (35%), Gaps = 18/199 (9%) Query: 566 STPPVNKPPVANAGTDLAVTGPAQLVLDGSSSRDPEGAVLSYSWAQISGPKATLSDATQA 625 + VNK P A +D +V ++ DG+ S+D +G + +Y W G K+ + AT Sbjct: 767 TDVHVNKEPKAVIKSDSSVIVEEEINFDGTESKDEDGEIKAYEWDFGDGEKSNEAKATHK 826 Query: 626 KAKVSVDAVSQDVNLVFELTVTDDHNL--SAKDQVVVTNKAPQPNLPPVVTVQDKVSV-Q 682 K V LTVTD++ + ++ V P + D Q Sbjct: 827 YNKTGEYEVK--------LTVTDNNGGINTESKKIKVVEDKPVEVINESEPNNDFEKANQ 878 Query: 683 AGKQVSITASATDPNGDTLSYQWSVP----AGLTASGQNSKTLVVTGPSVAVETGYDLTV 738 K + + Y + V +T + NS + T Y L Sbjct: 879 IAKSNMLVKGTLSEEDYSDKYYFDVAKKGNVKITLNNLNSVGITWTLYKEGDLNNYVLYA 938 Query: 739 TVTDGALDAQGKTRLTVTP 757 T DG + K T+ P Sbjct: 939 TGNDGTVL---KGEKTLEP 954
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 52.1 bits (125), Expect = 1e-08 Identities = 25/117 (21%), Positives = 47/117 (40%), Gaps = 4/117 (3%) Query: 1029 LEGIRVLCIDNESDILIAMHSLLGRWGCEVVCAQSLAQAEDLIAGGFLPQLVLSDYHLDD 1088 + G +L D+++ I ++ L R G +V + A IA G LV++D + D Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAG-DGDLVVTDVVMPD 59 Query: 1089 GKTGLQALHMLRLAHGNDIGGIIISADRKSEL-QAQIREHGYGYISKPVKPLKLRAL 1144 L ++ D+ +++SA + Y Y+ KP +L + Sbjct: 60 E-NAFDLLPRIK-KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGI 114
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 47.3 bits (112), Expect = 8e-09 Identities = 50/199 (25%), Positives = 71/199 (35%), Gaps = 34/199 (17%) Query: 3 VLLVIDMQQGLFTQPRHQDA----QVIANINRLAERVRAEQGRVIYV-----QHDE---- 49 VLL+ DMQ F A ++ ANI +L + V+Y Q+ + Sbjct: 32 VLLIHDMQN-YFVDAFTAGASPVTELSANIRKLKNQCVQLGIPVVYTAQPGSQNPDDRAL 90 Query: 50 ------PGTELDPASPGWQLHADLAPEGHDSRVRKTACDSFLDTELGFLLAEQAVDRLLI 103 PG P ++ +LAPE D + K +F T L ++ ++ D+L+I Sbjct: 91 LTDFWGPGLNSGPYEE--KIITELAPEDDDLVLTKWRYSAFKRTNLLEMMRKEGRDQLII 148 Query: 104 CGCATDFCVDTTLRSAAARGFEVVAVTDAHTTADRPHLSAEQIIEHHHWMWRHLSLPKGR 163 G T A + V DA AD H M L GR Sbjct: 149 TGIYAHIGCLVTACEAFMEDIKAFFVGDA--VAD--------FSLEKHQM--ALEYAAGR 196 Query: 164 SVTLLTTDELLGATQPEPA 182 + TD LL Q PA Sbjct: 197 CAFTVMTDSLLDQLQNAPA 215
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 28.1 bits (62), Expect = 0.038 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 12/58 (20%) Query: 113 LANLNQRIDTLAALLKDPAAG------------SRLKAEIQAQSEQLAAQAKQNKPLK 158 L N ++ L L K+ ++L+AE +A E+LA QA++ L+ Sbjct: 402 LEEANSKLAALEKLNKELEESKKLTEKEKAELQAKLEAEAKALKEKLAKQAEELAKLR 459
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 520 bits (1341), Expect = 0.0 Identities = 204/334 (61%), Positives = 254/334 (76%), Gaps = 1/334 (0%) Query: 1 MKYLVTGAAGFIGFHVARQLCEAGHQVVGLDNLNDYYEVSLKEARLAMLTPFPHFRFVQG 60 MKYLVTGAAGFIGFHV+++L EAGHQVVG+DNLNDYY+VSLK+ARL +L P F+F + Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELL-AQPGFQFHKI 59 Query: 61 ELADQAGMAALFAEGRFERVIHLGAQAGVRHSLENPFAYSESNLTGMLTVLEGCRQHGIQ 120 +LAD+ GM LFA G FERV + VR+SLENP AY++SNLTG L +LEGCR + IQ Sbjct: 60 DLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQ 119 Query: 121 HLIYASSSSVYGMGEQLPFSADQQVDHPVSLYAATKKSGELMAHAYSALYGLPTTGLRFF 180 HL+YASSSSVYG+ ++PFS D VDHPVSLYAATKK+ ELMAH YS LYGLP TGLRFF Sbjct: 120 HLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFF 179 Query: 181 TVYGPWGRPDMAIAKFTRAILAGEPIDVYNQGDLSRDFTFIDDIVEGILAVAELPPRPNP 240 TVYGPWGRPDMA+ KFT+A+L G+ IDVYN G + RDFT+IDDI E I+ + ++ P + Sbjct: 180 TVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPHADT 239 Query: 241 HWHAGEQSPAESAAPYRILNIGHGQPVRLLDFIEALEQALDKPAIKRMLPMQAGDMHATW 300 W +PA S APYR+ NIG+ PV L+D+I+ALE AL A K MLP+Q GD+ T Sbjct: 240 QWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLPLQPGDVLETS 299 Query: 301 ADSEPLHTLTGLRPATSIKEGVAAFVRWYLDYYQ 334 AD++ L+ + G P T++K+GV FV WY D+Y+ Sbjct: 300 ADTKALYEVIGFTPETTVKDGVKNFVNWYRDFYK 333
>56KDTSANTIGN#Rickettsia 56kDa type-specific antigen protein signature. Length = 533 Score = 28.8 bits (64), Expect = 0.004 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 3/49 (6%) Query: 19 LSPPAPTVTPVHLADASQRGFYIECSSMTACFQQANQTCPQGYQETDRR 67 L+PP PT++P+ +AD R F I+ ++ +QA Q + R Sbjct: 134 LTPPQPTMSPISIAD---RDFGIDIPNIPQAQRQAAQPPLNDQKRAAAR 179
>TYPE3IMRPROT#Type III secretion system inner membrane R protein family signature. Length = 261 Score = 26.6 bits (59), Expect = 0.012 Identities = 8/31 (25%), Positives = 11/31 (35%) Query: 32 LAGSIIVRQRGTKFHAGTNVGLGKDHTLFAT 62 AG II Q G F + + + A Sbjct: 97 TAGEIIGLQMGLSFATFVDPASHLNMPVLAR 127
>PRPHPHLPASEC#Prokaryotic zinc-dependent phospholipase C signature. Length = 398 Score = 30.8 bits (69), Expect = 0.002 Identities = 11/65 (16%), Positives = 19/65 (29%), Gaps = 11/65 (16%) Query: 18 GGCASHGGAEQAAADNSDFGGKSIYLRGEMNDWMATDASKVVKVADKLYMAKGTLKKEWA 77 GC ++ N DF N W A K +Y + ++ W Sbjct: 195 AGCKTNEDFYADILKNKDF-----------NAWSKEYARGFAKTGKSIYYSHASMSHSWD 243 Query: 78 PYKFK 82 + + Sbjct: 244 DWDYA 248
>MICOLLPTASE#Microbial collagenase metalloprotease (M9) signature. Length = 1104 Score = 64.7 bits (157), Expect = 1e-12 Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 6/96 (6%) Query: 567 TVTPLTSNQAPVAALSPKTLSVKAGESVVFDASASHD-DGGVVSYSWSSG-GTAATETV- 623 T T + N+ P A + SV E + FD + S D DG + +Y W G G + E Sbjct: 765 TNTDVHVNKEPKAVIK-SDSSVIVEEEINFDGTESKDEDGEIKAYEWDFGDGEKSNEAKA 823 Query: 624 --RFDTPGTYTVTVTVTDAEGLTASASATVTVTDDN 657 +++ G Y V +TVTD G + S + V +D Sbjct: 824 THKYNKTGEYEVKLTVTDNNGGINTESKKIKVVEDK 859
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 67.5 bits (165), Expect = 9e-14 Identities = 24/126 (19%), Positives = 47/126 (37%), Gaps = 3/126 (2%) Query: 663 QEIKVLAVDDNAANLKLIAAMLKEMVSQVVVCKNGKEAVRLAQSQPFDIIFMDIQMPIMD 722 +L DD+AA ++ L V + N R + D++ D+ MP + Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 723 GISATQAIRSQSLNTETPIVAVTAHAILGERERLIRQGMDDYLAKPID-EAMLAKLITDF 781 I+ + P++ ++A + +G DYL KP D ++ + Sbjct: 62 AFDLLPRIK--KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119 Query: 782 AHRRHQ 787 A + + Sbjct: 120 AEPKRR 125
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 35.3 bits (81), Expect = 3e-05 Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 4/80 (5%) Query: 50 CFGGYLGAQQVAFARVITDKATFGYLADVFVLPEHRGQGYSKALVAAMLDHPELQGLRRL 109 F YL + ++ ++ + + D+ V ++R +G AL+ ++ + L Sbjct: 67 AFLYYLENNCIGRIKIRSNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGL 126 Query: 110 SLATSD----AHGLYAGFGF 125 L T D A YA F Sbjct: 127 MLETQDINISACHFYAKHHF 146
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 115 bits (289), Expect = 2e-33 Identities = 82/256 (32%), Positives = 122/256 (47%), Gaps = 23/256 (8%) Query: 3 KRVLITGGGRGIGAATARHLAGQGYHLC-LNYRHDKGSAEALVAEILASHPVRCIAVQAD 61 K ITG +GIG A AR LA QG H+ ++Y +K + A H A AD Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAE---AFPAD 65 Query: 62 VGVEAEVVRLFEEMDARLGPVTHLVNNAGRLQPQMRVLEMSAERINQTLTTNVTSCFLCC 121 V A + + ++ +GP+ LVN AG L+P + + +S E T + N T F Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGL-IHSLSDEEWEATFSVNSTGVFNAS 124 Query: 122 REAVRRMTA--GGAIVNVSSAAA---RLGSAGEYVDYAAAKGAVDVLTRGLSLEVAAQGI 176 R + M G+IV V S A R A YA++K A + T+ L LE+A I Sbjct: 125 RSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAA----YASSKAAAVMFTKCLGLELAEYNI 180 Query: 177 RVNGVRPGFIYTDMH-----ADGGEPGRV----DRVKGQIPLQRGGQPAEVAAAIAWLLS 227 R N V PG TDM + G + + K IPL++ +P+++A A+ +L+S Sbjct: 181 RCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVS 240 Query: 228 DEASYVTGTFIDVAGG 243 +A ++T + V GG Sbjct: 241 GQAGHITMHNLCVDGG 256
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 30.7 bits (69), Expect = 0.002 Identities = 26/146 (17%), Positives = 48/146 (32%), Gaps = 25/146 (17%) Query: 8 RETSHPDWPLVWQIYGSSFPRYEQRQPQHQERK------------------MADSRFHCQ 49 ++ + P+ P V ++G P +E + E + + + Sbjct: 11 KDFNKPNEPFV--VFGRMIPAFENGVWTYTEERFSKPYFKQYEDDDMDVSYVEEEGKAAF 68 Query: 50 LFYQGEQLLGFIFW---WDCGEQIYIEHLAINPALRGQNHGSRLLAAFCETAGRPVILEI 106 L+Y +G I W+ IE +A+ R + G+ LL E A + Sbjct: 69 LYYLENNCIGRIKIRSNWN--GYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGL 126 Query: 107 DPPEDEIALRRLRFYQSLGFCLNEHD 132 +I + FY F + D Sbjct: 127 MLETQDINISACHFYAKHHFIIGAVD 152
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.8 bits (69), Expect = 0.006 Identities = 12/23 (52%), Positives = 16/23 (69%) Query: 32 VIVILGPSGCGKSTLLRTLNGLE 54 +V+ G G GKSTL+ TL GL+ Sbjct: 598 SVVLEGTGGIGKSTLINTLVGLD 620
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 52.5 bits (126), Expect = 1e-09 Identities = 43/303 (14%), Positives = 87/303 (28%), Gaps = 38/303 (12%) Query: 31 APTASFITAPVERRDLEQSVLADGTLQAQKLVSVGAQVSGQIKALHVALGDEVKQGDLLV 90 P P + E+ VL +L ++ + Q E+ Sbjct: 165 LPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQ----------KYQKELNLDKKRA 214 Query: 91 EIDDLTQQNALKDAEAALDNVQ----AQLASRRATLRNNQLAFERQRKVLARGLGS---- 142 E + + + + ++ + + L ++A ++ L E + L Sbjct: 215 ERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQ 274 Query: 143 ----QADYDSAEATLTATRADIQALT--------AQAVQARIAVDTAKVNLGYTRIVSPM 190 +++ SA+ + + + + + I +P+ Sbjct: 275 LEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPV 334 Query: 191 AGTIVAIPV-EQGQTVNAVQSTPTMVKVARLDTMTVEAQISEADVIKVKAGLPSYFTVLG 249 + + + V +G V + MV V DT+ V A + D+ + G + V Sbjct: 335 SVKVQQLKVHTEGGVVTTAE--TLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEA 392 Query: 250 APEQRY---QARLHAIEPAPDTINDDATSSSSTSTAVYYHGLFEVANPSGALRIGMTAQV 306 P RY ++ I D I D N + L GM Sbjct: 393 FPYTRYGYLVGKVKNI--NLDAIEDQRLGLVFNVIISIEENCLSTGNKNIPLSSGMAVTA 450 Query: 307 HIV 309 I Sbjct: 451 EIK 453 Score = 44.8 bits (106), Expect = 4e-07 Identities = 19/133 (14%), Positives = 50/133 (37%), Gaps = 1/133 (0%) Query: 46 LEQSVLADGTL-QAQKLVSVGAQVSGQIKALHVALGDEVKQGDLLVEIDDLTQQNALKDA 104 +E A+G L + + + + +K + V G+ V++GD+L+++ L + Sbjct: 80 VEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKT 139 Query: 105 EAALDNVQAQLASRRATLRNNQLAFERQRKVLARGLGSQADYDSAEATLTATRADIQALT 164 +++L + + + R+ +L + K+ + + + Sbjct: 140 QSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQ 199 Query: 165 AQAVQARIAVDTA 177 Q Q + +D Sbjct: 200 NQKYQKELNLDKK 212
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 89.5 bits (222), Expect = 6e-23 Identities = 39/148 (26%), Positives = 71/148 (47%), Gaps = 9/148 (6%) Query: 2 KILLVDDDLELGTMLSEYLSGEGFATTHVLTGKSGVQHALSGNYAAVVLDIMLPDLNGSE 61 IL+ DDD + T+L++ LS G+ + + +G+ VV D+++PD N + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 VLRQIR-RDSRIPVIMLTAKGDNIDRVIGLEMGADDYVPKPCYPRELVARLRAVL----R 116 +L +I+ +PV++++A+ + + E GA DY+PKP EL+ + L R Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 117 RVEPAPANPGKVQGLRLGELVLSPASRQ 144 R + L +G S A ++ Sbjct: 125 RPSKLEDDSQDGMPL-VGR---SAAMQE 148
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 67.0 bits (163), Expect = 4e-16 Identities = 29/170 (17%), Positives = 56/170 (32%), Gaps = 7/170 (4%) Query: 2 RSAEFNRDDVLRNAMEAFRAKGYAKTTMQELVAATGLHPGSLYAAFGNKRGLLLAAVDHY 61 + A+ R +L A+ F +G + T++ E+ A G+ G++Y F +K L + Sbjct: 7 QEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELS 66 Query: 62 VQEKSALRHSFFA------AASPLAGVQAYLEQ-VVNDALCGTCLVTRTLMELAEQDEEL 114 L + A + + LE V + + E + + Sbjct: 67 ESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVV 126 Query: 115 HLKLKAIYGELDADLAAVLSLALERGELAAGRDIPTLTAFLLINIQGLVT 164 + + E + L +E L A + I GL+ Sbjct: 127 QQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLME 176
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 30.3 bits (68), Expect = 0.006 Identities = 12/48 (25%), Positives = 20/48 (41%) Query: 233 PSLRGLGLGRRLVLQALDEARALGYQRCYLETTAVLREATALYESLGF 280 R G+G L+ +A++ A+ + LET + A Y F Sbjct: 99 KDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHF 146
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 214 bits (547), Expect = 2e-64 Identities = 115/464 (24%), Positives = 213/464 (45%), Gaps = 52/464 (11%) Query: 11 KRRTFAIISHPDAGKTTITEKVLLFGQAIQRAGTVKGRGSGQHAKSDWMEMEKQRGISIT 70 K +++H DAGKTT+TE +L AI G+V ++D +E+QRGI+I Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGT----TRTDNTLLERQRGITIQ 57 Query: 71 TSVMQFPYADCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTR 130 T + F + + VN++DTPGH DF + YR+L+ +D +++I A GV+ +TR L R Sbjct: 58 TGITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALR 117 Query: 131 LRDTPILTFMNKLDREVRDPMEVMDEVERELNIMCAPITWPIGCGKSFKGVYHLYKDETY 190 P + F+NK+D+ D V +++ +L+ K + Sbjct: 118 KMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVI------------------KQKVE 159 Query: 191 LYQSGQGHTIQEKRVVKGLNNPELDAAIGEDLAAQLRGE----LELVQGASPEFDHDAFI 246 LY + E + E + + L + G+ LEL Q S F Sbjct: 160 LYPNMCVTNFTESEQWDTVI--EGNDDL---LEKYMSGKSLEALELEQEESIR-----FH 209 Query: 247 AGEMTPVFFGTALGNFGVDHMLDGLTDWAPSPMPRKAESREVAATEEKFSGFVFKIQANM 306 + PV+ G+A N G+D++++ +T+ S R + + G VFKI+ Sbjct: 210 NCSLFPVYHGSAKNNIGIDNLIEVITNKFYSSTHR---------GQSELCGKVFKIE--Y 258 Query: 307 DPKHRDRIAFMRIVSGTYSKGMKMRHVRIGKDVNISDAVTFMAGDREQAEDAFAGDIIGL 366 K R R+A++R+ SG +R K + I++ T + G+ + + A++G+I+ L Sbjct: 259 SEK-RQRLAYIRLYSGVLHLRDSVRISEKEK-IKITEMYTSINGELCKIDKAYSGEIVIL 316 Query: 367 HNHGTIQIGDTFTQGEDLKFTGIPNFA-PELFRRIRLRDPLKQKQLLKGLVQLSEEG-AV 424 N +++ + L P L + P +++ LL L+++S+ + Sbjct: 317 QNEF-LKLNSVLGDTKLLPQRERIENPLPLLQTTVEPSKPQQREMLLDALLEISDSDPLL 375 Query: 425 QVFRPLISNDLIVGAVGVLQFDVVVSRLKSEYNVEALYEAVNVS 468 + + ++++I+ +G +Q +V + L+ +Y+VE + V Sbjct: 376 RYYVDSATHEIILSFLGKVQMEVTCALLQEKYHVEIEIKEPTVI 419
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 32.2 bits (73), Expect = 0.003 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 7/61 (11%) Query: 1 MKGQKGFGLLEILITLVVLGVGIVGLVAMSKSALTVSQDGRRYETAM---RLAESKLDEF 57 Q+GF LLEI++ +V++GV + LV L +++ + A+ E+ LD + Sbjct: 4 TDKQRGFTLLEIMVVIVIIGV-LASLVV---PNLMGNKEKADKQKAVSDIVALENALDMY 59 Query: 58 R 58 + Sbjct: 60 K 60
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 30.7 bits (69), Expect = 0.002 Identities = 10/55 (18%), Positives = 29/55 (52%), Gaps = 3/55 (5%) Query: 3 LKIRGFNLVELM-VAMVAGLLLVAAVISLFATILKANYTAMQTSRLNQEVQLLTD 56 ++ RGF L+E+M + ++ G+ +++ A+ + + A +R +++ + Sbjct: 1 MRQRGFTLLEMMLILLLMGVSAGMVLLAFPAS--RDDSAAQTLARFEAQLRFVQQ 53
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 36.8 bits (85), Expect = 1e-05 Identities = 14/56 (25%), Positives = 32/56 (57%), Gaps = 4/56 (7%) Query: 4 RKGRSAGFTLIELMVALSLVALLLTVAIPSYQSLRQDQMVKAATQAVYTDMMLLKS 59 + GFTL+E+MV + ++ +L ++ +P+ ++ KA Q +D++ L++ Sbjct: 3 ATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMG-NKE---KADKQKAVSDIVALEN 54
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 46.8 bits (111), Expect = 1e-09 Identities = 18/64 (28%), Positives = 39/64 (60%) Query: 4 KQSGITLLELIVVVTIVAIIASVAYPSFTDGLRKSRRAEALKGLLSMQLKQEEFRVSNTS 63 KQ G TLLE++VV+ I+ ++AS+ P+ K+ + +A+ +++++ + +++ N Sbjct: 6 KQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKLDNHH 65 Query: 64 YSAT 67 Y T Sbjct: 66 YPTT 69
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 32.6 bits (74), Expect = 2e-04 Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 2/53 (3%) Query: 3 RGFSLMELMIAVAVTAILTVIAYPSYNSYMASAKRAEAKAAL--LEAAQYMER 53 RGF+L+E+M+ + + +L + P+ A + +A + + LE A M + Sbjct: 8 RGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYK 60
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 29.1 bits (65), Expect = 0.015 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 1/66 (1%) Query: 8 LRQAGVGLVEVMIALLLSLLTVGVIIQVLLGNHKTYLTGEAIARVQEDSRFAVNLLQQEL 67 +RQ G L+E+M+ LLL ++ G+++ + + +AR + RF Q Sbjct: 1 MRQRGFTLLEMMLILLLMGVSAGMVLLAFPASRDDSA-AQTLARFEAQLRFVQQRGLQTG 59 Query: 68 RMVGYQ 73 + G Sbjct: 60 QFFGVS 65
>FIMBRIALPAPE#Escherichia coli: P pili tip fibrillum papE protein signature. Length = 173 Score = 29.2 bits (65), Expect = 0.009 Identities = 16/46 (34%), Positives = 22/46 (47%) Query: 143 LAALTRLQDEWAADHPDLAAELFNPAARLQQARQLWGDEELATLAR 188 L A+ Q AAD+ +L PA +Q A WGD E+ L + Sbjct: 13 LGAVLMSQHVHAADNLTFKGKLIIPACTVQNAEVNWGDIEIQNLVQ 58
>FRAGILYSIN#Fragilysin metallopeptidase (M10C) enterotoxin signature. Length = 405 Score = 33.9 bits (77), Expect = 0.001 Identities = 38/170 (22%), Positives = 66/170 (38%), Gaps = 25/170 (14%) Query: 16 ATPVLAETIDLMVLHSPGLAARYQGDAQTRIQHMINVTNQIYAASGLDLTVRA---VHDQ 72 A P +T+ ++ L G + Y + ++Q + N +YA GL V ++ Sbjct: 220 AVPSEPKTVYVICLRENG-STIYPNEVSAQMQ---DAANSVYAVHGLKRYVNFHFVLYTT 275 Query: 73 QVNYPDGGTDKSALNAVTYQQDPAFKQVPTLRTRYGADMVVLMRPQTGDHGSCGLAWVGG 132 + + P G + L T + K P Y + L+R T D+ G++W Sbjct: 276 EYSCPSGDAKE-GLEGFT----ASLKSNPKAEG-YDDQIYFLIRWGTWDNKILGMSWFNS 329 Query: 133 SATYTDGSKAYADGDVSQDAGSMFSHVTATGCGDVVLAHELGHNMGLNHS 182 T D + S + + + V+AHELGH +G H+ Sbjct: 330 YNVNTAS-----DFEASGMSTTQLMY-------PGVMAHELGHILGAEHT 367
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.9 bits (64), Expect = 0.034 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%) Query: 27 DGELVALLGPSGCGKTTLLRIIAGLE-QADSGSVIIRGEDASD 68 D +V L G G GK+TL+ + GL+ +D+ I G+D+ + Sbjct: 596 DYSVV-LEGTGGIGKSTLINTLVGLDFFSDTHFDIGTGKDSYE 637
>ECOLIPORIN#E.coli/Salmonella-type porin signature. Length = 383 Score = 28.3 bits (63), Expect = 0.038 Identities = 13/24 (54%), Positives = 18/24 (75%) Query: 1 MKLRMTALTLLSLLALGQANAAEI 24 MK ++ AL + +LLA G A+AAEI Sbjct: 1 MKRKVLALVIPALLAAGAAHAAEI 24
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 28.0 bits (62), Expect = 0.031 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%) Query: 148 GVTIGPRSIIGAGA-VITRDIPADSVAVGNPARVIRSLSPDAPRG 191 V + + G G V+TR +P +VA + A ++R L+ +A G Sbjct: 112 AVPVASDAAPGIGDEVVTRVVPLTNVAARDLAPLLRQLNDNAGVG 156
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 41.7 bits (98), Expect = 1e-06 Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 10/104 (9%) Query: 160 VNADQAATAIAEALGAD-LVMLSDVSGILDGKGKLVPQ-LDKVT---ALDLMEKGVISDG 214 ++ D A +AE + AD ++L+DV+G G Q L +V E+G G Sbjct: 213 IDKDLAGEKLAEEVNADIFMILTDVNGAALYYGTEKEQWLREVKVEELRKYYEEGHFKAG 272 Query: 215 -MAVKVKAALHAAETLGKPVCVASWRYPDQLLKLLAGGAVGTQV 257 M KV AA+ E G+ +A ++ ++ L G GTQV Sbjct: 273 SMGPKVLAAIRFIEWGGERAIIAH---LEKAVEALEGKT-GTQV 312
>FIMBRIALPAPF#Escherichia coli: P pili tip fibrillum papF protein signature. Length = 167 Score = 32.4 bits (73), Expect = 0.001 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%) Query: 200 LYVPEECTINGGQTIEVEFGDLPGNGLDGNNFEKTVPLTFQC 241 +Y+P CTIN GQ I V+FG++ +D + E T ++ C Sbjct: 29 VYIPP-CTINNGQNIVVDFGNINPEHVDNSRGEVTKNISISC 69
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 720 bits (1859), Expect = 0.0 Identities = 231/865 (26%), Positives = 381/865 (44%), Gaps = 52/865 (6%) Query: 18 VFMLCVPGLMAVANHAWAETEFNIDALDLDERTKIDLSQFADEGYILPGDYYLEIEVNKN 77 V + A A + AE FN L D + DLS+F + + PG Y ++I +N Sbjct: 28 VRLFVACAFAAQAPLSSAELYFNPRFLADDPQAVADLSRFENGQELPPGTYRVDIYLNNG 87 Query: 78 KLPLQKIPFYETDTGKGKGGVACLPQEVIPKLALTDEAIAKIDTWHDGQCANLL-ALDGV 136 + + + F D +G V CL + + + L +++ ++ D C L + Sbjct: 88 YMATRDVTFNTGD--SEQGIVPCLTRAQLASMGLNTASVSGMNLLADDACVPLTSMIHDA 145 Query: 137 VIANDIGNGLLRIAVPQAWMKYSDPNWIPPEQWDEGIPGMMLDYNINAQVNEGD-GYSNR 195 D+G L + +PQA+M +IPPE WD GI +L+YN + + G ++ Sbjct: 146 TAQLDVGQQRLNLTIPQAFMSNRARGYIPPELWDPGINAGLLNYNFSGNSVQNRIGGNSH 205 Query: 196 NISSYGTLGFNYGAWRLRGDYQANAYWGDNERTTS---ELNRIYAYRPLPDMAAKLTVGE 252 G N GAWRLR + + D+ + + + R + + ++LT+G+ Sbjct: 206 YAYLNLQSGLNIGAWRLRDNTTWSYNSSDSSSGSKNKWQHINTWLERDIIPLRSRLTLGD 265 Query: 253 QQLNSQLIDGFRYTGVNLANDERMLPPSLQGYAPEVSGIAKTNAKVTISQSGRILYETNV 312 + DG + G LA+D+ MLP S +G+AP + GIA+ A+VTI Q+G +Y + V Sbjct: 266 GYTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQVTIKQNGYDIYNSTV 325 Query: 313 PAGPFRIQGLD-SSVRGRLDVRVEEQDGSVNSFQVDTATVPYLTRPGYVRYNLAVGAPSE 371 P GPF I + + G L V ++E DGS F V ++VP L R G+ RY++ G Sbjct: 326 PPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQREGHTRYSITAGEYRS 385 Query: 372 QTDSVHDVHGPAFVTGDFSWGVANSWSLYGGSLVAGEYNSMGLGIGRDLYAFGAISADLT 431 P F G+ W++YGG+ +A Y + GIG+++ A GA+S D+T Sbjct: 386 GN---AQQEKPRFFQSTLLHGLPAGWTIYGGTQLADRYRAFNFGIGKNMGALGALSVDMT 442 Query: 432 QSIAKLPGLSTKIGQSVRVNYAKQFDEYNSSITFAGYRFSQHNFMTMSQFLSNKERLEKN 491 Q+ + LP S GQSVR Y K +E ++I GYR+S + + ++ Sbjct: 443 QANSTLPDDSQHDGQSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFADTTYSRMNGYNI 502 Query: 492 ETTSSDDYNTWGDKELYTITANKT-----FWAEDAAKALTVYLDYTHRTYWEHDAEDR-Y 545 ET + Y + NK + + T+YL +H+TYW D + Sbjct: 503 ETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRTSTLYLSGSHQTYWGTSNVDEQF 562 Query: 546 GLTINKNVNIGSFKDVSVYVSAYKTKTEN-YEDDKSVMLTLSMPIGDRK----------- 593 +N +F+D++ +S TK D+ + L +++P Sbjct: 563 QAGLNT-----AFEDINWTLSYSLTKNAWQKGRDQMLALNVNIPFSHWLRSDSKSQWRHA 617 Query: 594 SAGYSVQ-SSNGKVTHLATYQDYSRPDDT--YQLGAGV----QSNGHAVARGYYNHNSDI 646 SA YS+ NG++T+LA D+ Y + G N + N+ Sbjct: 618 SASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGDGNSGSTGYATLNYRGGY 677 Query: 647 GAVSLNAYSVQSEYTSVGASLRGGLTATQHGAALHQATRRGGTRMMVDTDKTSGVSFNNG 706 G ++ YS + + + GG+ A +G L Q T ++V N Sbjct: 678 GNANIG-YSHSDDIKQLYYGVSGGVLAHANGVTLGQ--PLNDTVVLVKAPGAKDAKVENQ 734 Query: 707 RAV-TNRFGVAVISDMTDYRKSDTRVDVDQLSDDIDAMNAIKQGTLTEGAIGYNAFEMAE 765 V T+ G AV+ T+YR++ +D + L+D++D NA+ T GAI F+ Sbjct: 735 TGVRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVPTRGAIVRAEFKARV 794 Query: 766 GFKLLANVKLPDGSVPPFGATVVKDSGRVLSVVDEDGLVYLTGVKPNEAFELSWGGARQC 825 G KLL + + PFGA V +S + +V ++G VYL+G+ ++ WG Sbjct: 795 GIKLLMTLT-HNNKPLPFGAMVTSESSQSSGIVADNGQVYLSGMPLAGKVQVKWGEEENA 853 Query: 826 KIVAPQQVTD------LSMKTLTCK 844 VA Q+ L+ + C+ Sbjct: 854 HCVANYQLPPESQQQLLTQLSAECR 878
>MICOLLPTASE#Microbial collagenase metalloprotease (M9) signature. Length = 1104 Score = 183 bits (465), Expect = 2e-49 Identities = 99/532 (18%), Positives = 195/532 (36%), Gaps = 77/532 (14%) Query: 384 AHPAMKLLLEYVRAH---NYHNYGKHKEDGPAAAEALAEALTALGAHPLLFPEQASDEVG 440 + L+E++RA ++N + P A+ A+ + F + Sbjct: 156 DDKGIPTLVEFLRAGYYLGFYNKQLSYLNTPQLKNECLPAMKAIQYNSN-FRLG-TKAQD 213 Query: 441 AVMGAWSIALHGQFKSPAVQSRFGTLLGEFNQMLAYSTRHASEINGQHAWATGLFDLLNF 500 V+ A + P V + +L +F + ++ S + +F+L+ Sbjct: 214 GVVEALGRLIGNASADPEVINNCIYVLSDFKDNID---KYGSNYSK----GNAVFNLMKG 266 Query: 501 LDFASDYSDPFANDFRQQDGELRKQL--HALGMSELALWKGRDGAD-LFLLNNVLDAYTR 557 +D+ ++ + ++ E ++ + + L + D +L+NN L R Sbjct: 267 IDYYTNSVIYNTKGYDAKNTEFYNRIDPYMERLESLCTIGDKLNNDNAWLVNNALYYTGR 326 Query: 558 LYRVARYTRPDELDGYRKLLDDSVIALVRHHNLIPGGQQSQDLLEDMSLTLSTYYLTYTD 617 + + R D R L A+ + L ++ + L+ Sbjct: 327 MGKF----REDPSISQRALER----AMKEYPYLSYQYIEAANDLDLN-----------FG 367 Query: 618 RTSEACISGDFAGLCTPVRVEDVLPFEHTCSPTLR-LRAQD-LTMDQAEGICRELGAEEQ 675 + + DF + R E LP +T ++A D +T ++ + + + Sbjct: 368 GKNSSGNDIDFNKIKADAR-EKYLPKTYTFDDGKFVVKAGDKVTEEKIKRLYWASKEVKA 426 Query: 676 QFHQQMETGWQPVADDHNEALELVVFNSSADWKRYGSALFGGVSTDNGGIYLEGDPARPG 735 QF + ++ + ++ L +V++NS ++K + G STDNGGIY+E Sbjct: 427 QFMRVVQNDKALEEGNPDDILTVVIYNSPEEYK-LNRIIN-GFSTDNGGIYIE------- 477 Query: 736 NQARFFAYEAEWKRPAFQVWNL----RHEYVHYLDGRFNQYGSFGH---YPLNRTTWWSE 788 N FF YE P ++ L RHE+ HYL GR+ G +G Y TW+ E Sbjct: 478 NIGTFFTYERT---PEESIYTLEELFRHEFTHYLQGRYVVPGMWGQGEFYQEGVLTWYEE 534 Query: 789 GLAEFIAH-----GQCFARG-LDNVAGRPASDRPALADILHLDYDKGGEMVYSWSYTVHR 842 G AEF A G + +A ++R +L +LH Y Y++ + + Sbjct: 535 GTAEFFAGSTRTDGIKPRKSVTQGLAYDR-NNRMSLYGVLHAKYG--SWDFYNYGFALSN 591 Query: 843 FLNETGRG-----------ASWLAMAQALRNPDQQQAMST-FEAELDQLIAN 882 ++ G + + ++ ++ +D L+ N Sbjct: 592 YMYNNNMGMFNKMTNYIKNNDVSGYKDYIASMSSDYGLNDKYQDYMDSLLNN 643 Score = 49.3 bits (117), Expect = 7e-08 Identities = 17/115 (14%), Positives = 34/115 (29%), Gaps = 14/115 (12%) Query: 732 ARPGNQARFFAYEAEWKRPAFQVWNLRHEYVHYLDGRFNQYGSFGHYPLNRTTWWSEGLA 791 + + + + Y A + L +Y Y+D N + PL + + A Sbjct: 608 IKNNDVSGYKDYIASMS----SDYGLNDKYQDYMDSLLNNIDNLDV-PLVSDEYVNGHEA 662 Query: 792 EFIAHGQCFARGLDNVAGRPASDRPALADILHLDYDKGGEMVYSWSYTVHRFLNE 846 + I + + N+ ++ YD +Y R E Sbjct: 663 KDINEITNDIKEVSNIKDLSSN---VEKSQFFTTYD------MRGTYVGGRSQGE 708
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 29.6 bits (66), Expect = 0.015 Identities = 19/87 (21%), Positives = 29/87 (33%), Gaps = 2/87 (2%) Query: 224 EPIVIGGPVPCQALSTIGASQPCLPIAPPPHKPKAKPAAAVSAATATSAAAATSGAVATS 283 EP+V P P + + P KPK KP V + A Sbjct: 71 EPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESRPASPFE 130 Query: 284 AAVPNEAAPVDNPAAASAATPAGNIPA 310 P A P + A A+ + P ++ + Sbjct: 131 NTAP--ARPTSSTATAATSKPVTSVAS 155 Score = 28.8 bits (64), Expect = 0.024 Identities = 15/81 (18%), Positives = 21/81 (25%) Query: 248 PIAPPPHKPKAKPAAAVSAATATSAAAATSGAVATSAAVPNEAAPVDNPAAASAATPAGN 307 P+ KPK KP ++ N A + A+AAT Sbjct: 91 PVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATSKPV 150 Query: 308 IPATNTAVPSEVTPVDNPAAA 328 + PA A Sbjct: 151 TSVASGPRALSRNQPQYPARA 171
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 97.8 bits (243), Expect = 1e-26 Identities = 66/246 (26%), Positives = 110/246 (44%), Gaps = 16/246 (6%) Query: 2 IAMVTGASSGFGESISRQLVQAGYRVIGTGRRGERLAALADELGAQ-FLPLVF--DVQDK 58 IA +TGA+ G GE+++R L G + E+L + L A+ F DV+D Sbjct: 10 IAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDS 69 Query: 59 AATRAAIDGLPAEWREVDLLVNNAGLALGLEPAHKADLEDWEQMIATNISGLTLLTRLLL 118 AA + E +D+LVN AG+ L H E+WE + N +G+ +R + Sbjct: 70 AAIDEITARIEREMGPIDILVNVAGV-LRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128 Query: 119 PGMVARNRGHVINIGSIAGTYPYPGGNVYGATKAFVKQFSLNLRADLAGTAIRVTNVEPG 178 M+ R G ++ +GS P Y ++KA F+ L +LA IR V PG Sbjct: 129 KYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPG 188 Query: 179 LCGGTEFSNVRFHGDDAK-------AATVYQGV---QAIQPEDIANTVLWI-SQQPAHVN 227 T+ + ++ T G+ + +P DIA+ VL++ S Q H+ Sbjct: 189 -STETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHIT 247 Query: 228 INSIEI 233 ++++ + Sbjct: 248 MHNLCV 253
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 43.8 bits (103), Expect = 4e-08 Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 3/86 (3%) Query: 43 GRTLLVLDQQEQLMGYLCLLEHRGW-DRLIIQTLAIRWTIRRQGWARRLLEQVIQEGKEA 101 G+ + + +G + + W +I+ +A+ R++G LL + I+ KE Sbjct: 64 GKAAFLYYLENNCIGRIKI--RSNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKEN 121 Query: 102 GWGAIRLEVGDANEEAQALYRELGFR 127 + + LE D N A Y + F Sbjct: 122 HFCGLMLETQDINISACHFYAKHHFI 147
>BACYPHPHTASE#Salmonella/Yersinia modular tyrosine phosphatase signature. Length = 468 Score = 34.8 bits (79), Expect = 1e-04 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Query: 129 DGKHL-VIHCKGGSGRTGLVAAALLMSLGQPQQEAMAAIRA 168 D K VIHC+ G GRT + A+ M+ + Q ++ + + Sbjct: 394 DSKLRPVIHCRAGVGRTAQLIGAMCMNDSRNSQLSVEDMVS 434
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 33.3 bits (76), Expect = 0.002 Identities = 14/75 (18%), Positives = 32/75 (42%), Gaps = 4/75 (5%) Query: 108 LEKERRIEQLQQ----YRRDLQQCEKQFQQSLAQVRNVMSKIQSRPLNAIGEAQELINAM 163 LE+E + + Y+ L+Q E + + + + V ++ L+ + + + I + Sbjct: 255 LEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLL 314 Query: 164 TEQLLSVDEMVLHLV 178 T +L +E V Sbjct: 315 TLELAKNEERQQASV 329
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 37.6 bits (87), Expect = 4e-05 Identities = 43/174 (24%), Positives = 80/174 (45%), Gaps = 19/174 (10%) Query: 177 GVILTMTMIMFT----SAAIVRERERGNLELLITTPVGSMELMLGKIL------PYIGVG 226 G++ T M T AA R + E ++ T + +++LG++ G G Sbjct: 72 GMVATSAMTAATFETIYAAFGRMEGQRTWEAMLYTQLRLGDIVLGEMAWAATKAALAGAG 131 Query: 227 LIQVAIILGLGHFIFDVPINGALSQVLLATLLFIAASLTLGLLISTLAQTQLQAMQMTVF 286 + VA LG + + + AL + L L F +LG++++ LA + + Sbjct: 132 IGVVAAALG---YTQWLSLLYALPVIALTGLAFA----SLGMVVTALAPSYDYFIFYQTL 184 Query: 287 ILLPSILLSGFMFPYEGMPLPAQWIAEVLPATHFMRLIRGIVL--RGGELSELL 338 ++ P + LSG +FP + +P+ Q A LP +H + LIR I+L ++ + + Sbjct: 185 VITPILFLSGAVFPVDQLPIVFQTAARFLPLSHSIDLIRPIMLGHPVVDVCQHV 238
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 50.6 bits (121), Expect = 3e-09 Identities = 28/160 (17%), Positives = 49/160 (30%), Gaps = 19/160 (11%) Query: 43 AGEIIRALPVAEGSRVEEGTLLARLDDRRQQAVLARARAQQAQARAVLARL-TNGERPED 101 I++ + V EG V +G +L +L +A + ++ QAR R E Sbjct: 103 ENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIEL 162 Query: 102 IAAARASLDKAQANVRESERNFERIDRLVRRKLVSPADLDKARAQRDSALAEQDGARQQL 161 L SE R+ L+ + Q + ++ L Sbjct: 163 NKLPELKLPDEPYFQNVSEEEVLRLTSLI-------------KEQFSTWQNQKYQKELNL 209 Query: 162 DKLARGVRREDIDEAQAALLAATAEVALAERELADLSIVA 201 DK R + A + + + L D S + Sbjct: 210 DKK-----RAERLTVLARINRYENLSRVEKSRLDDFSSLL 244 Score = 49.4 bits (118), Expect = 8e-09 Identities = 36/276 (13%), Positives = 85/276 (30%), Gaps = 19/276 (6%) Query: 13 LTGLLSACQPQASTTALGTLERDRVLLTATAGEIIRALPVAEGSRVEEGTLLARLDDRRQ 72 LT L + + ++L ++ + I E ++ + Sbjct: 127 LTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLR 186 Query: 73 QAVLARARAQQAQARAVLARLTNGERPEDIAAARASLDKAQANVRESERNFERIDRLVRR 132 L + + Q + L ++ + A +++ + R + + L+ + Sbjct: 187 LTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHK 246 Query: 133 KLVSPADLDKARAQRDSALAEQDGARQQLDKLARGVR-----------------REDIDE 175 + ++ + + + A+ E + QL+++ + + + + Sbjct: 247 QAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQ 306 Query: 176 AQAALLAATAEVALAERELADLSIVATRSGRLDSLPYH-LGERVAVGAVLAAIQADEAPY 234 + T E+A E I A S ++ L H G V L I ++ Sbjct: 307 TTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTL 366 Query: 235 -ARVYVPEPSLAGYRVGQPVRVQVDGVAEPFTGRLR 269 V + VGQ ++V+ G L Sbjct: 367 EVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLV 402
>FLAGELLIN#Flagellin signature. Length = 507 Score = 29.6 bits (66), Expect = 0.042 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 479 QTLQKIKLIRTQRLEESKLLDEQLEAAQEELQKLMAEMDIIATQHAFPGVEV 530 LQ+++ + Q D L++ Q+E+Q+ + E+D ++ Q F GV+V Sbjct: 86 NNLQRVRELSVQ-ATNGTNSDSDLKSIQDEIQQRLEEIDRVSNQTQFNGVKV 136
>ECOLIPORIN#E.coli/Salmonella-type porin signature. Length = 383 Score = 122 bits (307), Expect = 2e-33 Identities = 108/382 (28%), Positives = 151/382 (39%), Gaps = 69/382 (18%) Query: 49 IKMKKLTVVALALTAAFQAHAVEVYKNDTTTLDLYGRIYAGQFFGDKKEGVDSTHPNGTQ 108 +K K L +V AL AA AHA E+Y D LDLYG++ +F D Sbjct: 1 MKRKVLALVIPALLAAGAAHAAEIYNKDGNKLDLYGKVDGLHYFSD-------------- 46 Query: 109 EYSDKQGANQFVRFGAKVDSQINSQLKALAQYEVQMYINDSEKTISENSDNLRTRLAFAG 168 S K G ++R G K ++QIN QL Q+E + N +E N TRLAFAG Sbjct: 47 -DSSKDGDQTYMRVGFKGETQINDQLTGYGQWEYNVQANTTEG----EGANSWTRLAFAG 101 Query: 169 VG-ADWGNITFGRQKGAPGFLADWTDVSLSDGYGNDALGAKTDTFATNRAGSVLKYS--- 224 + D+G+ +GR G + WTD+ +G D+ D + T RA V Y Sbjct: 102 LKFGDYGSFDYGRNYGVLYDVEGWTDMLPE--FGGDSY-TYADNYMTGRANGVATYRNTD 158 Query: 225 --GLFNGFQVDTSYK--------FDGGDTEETTSKDSDA------AYGAAVAYTFPFNLA 268 GL +G Y+ D + D +G + Y + Sbjct: 159 FFGLVDGLNFALQYQGKNESQSADDVNIGTNNRNNGDDIRYDNGDGFGISTTYDIGMGFS 218 Query: 269 LGTAY----------NVGIRDKNGEEDAKLWLLSAKYDNKAVYAALSYADG---TDFLAT 315 G AY N G G++ A W KYD +Y A Y++ T + T Sbjct: 219 AGAAYTTSDRTNEQVNAGGTIAGGDK-ADAWTAGLKYDANNIYLATMYSETRNMTPYGKT 277 Query: 316 GKDHTG--------WEGALGYNFENGF--GLMALWNKQK---VEQDGKADYDSIDYYTLG 362 K + G +E Y F+ G + L +K K D D + Y +G Sbjct: 278 DKGYDGGVANKTQNFEVTAQYQFDFGLRPAVSFLMSKGKDLTYNNVNGDDKDLVKYADVG 337 Query: 363 AQYKFNKNLRVIGEYRINNLDS 384 A Y FNKN +Y+IN LD Sbjct: 338 ATYYFNKNFSTYVDYKINLLDD 359
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 40.7 bits (95), Expect = 3e-07 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 7/58 (12%) Query: 76 VAPARQGQGLGKALLEHAKQ-----RLPTLRLQVYQQNRTACDFYRAQGFQVAAGGVD 128 VA + +G+G ALL A + L L+ N +AC FY F + G VD Sbjct: 97 VAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFII--GAVD 152
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 28.0 bits (62), Expect = 0.018 Identities = 8/50 (16%), Positives = 22/50 (44%) Query: 114 LARSHWGEGWMAEALTALIVYARQLGIATLLADIEPDNLPSQRLFRRLGF 163 +A+ + +G L I +A++ L+ + + N+ + + + F Sbjct: 97 VAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHF 146
>OMADHESIN#Yersinia outer membrane adhesin signature. Length = 455 Score = 28.7 bits (63), Expect = 0.015 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%) Query: 117 DNLMAPYIGAGIGATRFAAYDSEVAPSMSLALGVQPRLTEHLALRAEVRGYGS 169 ++L PY G+G F A S +LA+G R+ E++AL+A V GS Sbjct: 393 NSLFQPY---GVGKVNFTAGVGGYRSSQALAIGSGYRVNENVALKAGVAYAGS 442
>PF07520#Virulence protein SrfB Length = 1041 Score = 29.9 bits (67), Expect = 0.022 Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 2/54 (3%) Query: 271 SQAEMAQARI--DNISVLSALANKFSNPLIAYVGPLIAILAMSKSFLGTSMGVS 322 S+ E A R + + S N F P +GP L ++ T G+S Sbjct: 330 SRVEFADLRFGDERYASRSGRRNAFMWPSFVRMGPEAVRLVQAEEGTETLSGLS 383
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 69.7 bits (170), Expect = 2e-14 Identities = 41/302 (13%), Positives = 81/302 (26%), Gaps = 10/302 (3%) Query: 32 TAEPEVAAAPAPVSDPTPAVAAEVPASAQNSVLHDDCCPPAELDDHGPLVVEECASDLEP 91 T + P + P+V + A+ PA + V E + + Sbjct: 991 TVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKT 1050 Query: 92 VIVNEALLAEEERAAAQAQAQEAARVAAELKAAQEVRIAAEARAAEEARIAAEARTAEEA 151 V NE E + + + V A + + + +E + + A +E Sbjct: 1051 VEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEE 1110 Query: 152 RLAAEA-RAAEEARIAAEA----RAAEEARLAAEARAAEEARVAAEARAVKEARIAAEAS 206 + E + E ++ ++ +E + AE + V + + A Sbjct: 1111 KAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQ 1170 Query: 207 AAEETRIAAEARAAEEARIAAEARAAEEARLAAEARAAEEARIAAEARAAEEARLAAEAR 266 A+ET E E + E A + + R + + Sbjct: 1171 PAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSV 1230 Query: 267 AAEEARLAAEAQAAEEARLAKEAQRVEDLRLVAEMEAEAAALAALPLAAKVDDDTQEKPQ 326 + L + L ++A A A +Q Q Sbjct: 1231 PHNVEPATTSSNDRSTVALCDLTSTNTNAVL-----SDARAKAQFVALNVGKAVSQHISQ 1285 Query: 327 RE 328 E Sbjct: 1286 LE 1287 Score = 63.2 bits (153), Expect = 2e-12 Identities = 42/244 (17%), Positives = 77/244 (31%), Gaps = 20/244 (8%) Query: 96 EALLAEEERAAAQAQAQEAARVAAELKAAQEVRIAAEARAAEEARIAAEARTAEEARLAA 155 E + + + IA A A A +E A Sbjct: 984 EVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPP--PAPATPSETTETVA 1041 Query: 156 EARAAEEARIAAEARAAEEARLAAEARAAEEAR--VAAEARAVKEARIAAEASAAE--ET 211 E E + + A E A A+EA+ V A + + A+ +E + ET Sbjct: 1042 ENSKQESKTVEKNEQDATET-TAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTET 1100 Query: 212 RIAAEARAAEEARIAAEARAAEEARLAAEA----RAAEEARIAAEARAAEEARLAAEARA 267 + A E+A++ E + E ++ ++ +E + AE + + + Sbjct: 1101 KETATVEKEEKAKVETE-KTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQ 1159 Query: 268 AEEARLAAEAQAAEEAR-----LAKEAQRVEDLRLVAEMEAEAAALAALPLAAKVDDDTQ 322 ++ A Q A+E E+ V V E P V+ ++ Sbjct: 1160 SQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQP---TVNSESS 1216 Query: 323 EKPQ 326 KP+ Sbjct: 1217 NKPK 1220 Score = 54.7 bits (131), Expect = 1e-09 Identities = 38/220 (17%), Positives = 71/220 (32%), Gaps = 9/220 (4%) Query: 132 EARAAEEARIAAEARTAEEARLAAEARAAEEARIAAEARAAEEARLAAEARAAEEARVAA 191 E + T + + + IA A A + VA Sbjct: 984 EVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIAR-VDEAPVPPPAPATPSETTETVAE 1042 Query: 192 EARAVKEARIAAEASAAEETRIAAEARAAEEARIAAEARAAEEARLAAEARAAE--EARI 249 ++ + E A E T E ++ + A + E A+ +E + + E + Sbjct: 1043 NSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKE 1102 Query: 250 AAEARAAEEARLAAEARAAEEARLAAEAQA----AEEARLAKEAQRVED-LRLVAEMEAE 304 A E+A++ E + E ++ ++ +E + E R D + E +++ Sbjct: 1103 TATVEKEEKAKVETE-KTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQ 1161 Query: 305 AAALAALPLAAKVDDDTQEKPQREGFFARLKRSLVRTREN 344 A AK E+P E S+V EN Sbjct: 1162 TNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPEN 1201 Score = 32.3 bits (73), Expect = 0.007 Identities = 30/174 (17%), Positives = 55/174 (31%), Gaps = 9/174 (5%) Query: 13 RKKEEAEAVQPQTPQATPITAEPEVAAAPAPVSDPTPAVAAEVPASAQNSVLHDDCCPPA 72 K +E V Q + + A PA +DPT V + P S N+ D PA Sbjct: 1117 EKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPT--VNIKEPQSQTNT--TADTEQPA 1172 Query: 73 ELDDHGPLVVEECASDLEPVIVNEALLAEEERAAAQAQAQEAARVAAELKAAQEVRIAAE 132 + V + N + E A Q + + + K + + Sbjct: 1173 KETS--SNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSV 1230 Query: 133 ARAAEEARIAAEARTAEEARLAAEARAAEEARIAAEARAAEEARLAAEARAAEE 186 E A ++ R+ + + + ++ARA + +A + Sbjct: 1231 PHNVEPATTSSNDRSTVA---LCDLTSTNTNAVLSDARAKAQFVALNVGKAVSQ 1281
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 105 bits (263), Expect = 2e-27 Identities = 44/367 (11%), Positives = 116/367 (31%), Gaps = 81/367 (22%) Query: 48 IGSKLSGYISEVLVTDNQPVKAGQLIARLDDREYKTKVAEAEADLRLN-------QATAE 100 I + + E++V + + V+ G ++ +L + + ++ L Q + Sbjct: 99 IKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSR 158 Query: 101 NLAATRTQQLSLI--------------------------RQAEAKVSSANAEQVRA---- 130 ++ + +L L Q + N ++ RA Sbjct: 159 SIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLT 218 Query: 131 ---------------QQQVRRVSQLNQRHYSS-------QDSLDEVRAGLQVNQAQEQEA 168 + ++ S L + + ++ E L+V ++Q ++ Sbjct: 219 VLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQI 278 Query: 169 KAALQAARERLLVLDAEAK--------QNQAKLALSAAQLEQAKLELAYTELRAPADGII 220 ++ + +A+E ++ K Q + L +L + + + +RAP + Sbjct: 279 ESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKV 338 Query: 221 GKRSLRA-GLYVQSGMQVASLVPLQQV-WVEANFKETQLLHMQPGQKVEVILDAYPDQ-- 276 + + G V + + +VP V A + + + GQ + ++A+P Sbjct: 339 QQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRY 398 Query: 277 -PVEGIIDSLAPATGAKFALLPPENATGNFTKIVQRVPVKIRIPEPGPLAGKLLPGLSTE 335 + G + ++ + G ++ + + L G++ Sbjct: 399 GYLVGKVKNINLDA-------IEDQRLGLVFNVIISIEENCLSTGNKNI--PLSSGMAVT 449 Query: 336 VIVDTRS 342 + T Sbjct: 450 AEIKTGM 456
>SECA#SecA protein signature. Length = 901 Score = 35.6 bits (82), Expect = 7e-04 Identities = 29/83 (34%), Positives = 39/83 (46%), Gaps = 9/83 (10%) Query: 289 MRLVQGDV-----GSGKTLVAALAA-LQAI-GNGCQVGLMAPTELLAEQHAINFAKWLEP 341 M L + + G GKTL A L A L A+ G G V ++ + LA++ A N E Sbjct: 92 MVLNERCIAEMRTGEGKTLTATLPAYLNALTGKG--VHVVTVNDYLAQRDAENNRPLFEF 149 Query: 342 LGIGVGWLAGKQKGKAREEALAA 364 LG+ VG A+ EA AA Sbjct: 150 LGLTVGINLPGMPAPAKREAYAA 172
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 34.1 bits (78), Expect = 3e-04 Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 3/59 (5%) Query: 66 DEAQIRFMALRPEFRGQGLGARMVEDLEQLARSEKVKRL---VMNARQEAVEFYRKCGF 121 A I +A+ ++R +G+G ++ + A+ L + A FY K F Sbjct: 88 GYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHF 146
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 166 bits (422), Expect = 3e-46 Identities = 94/434 (21%), Positives = 170/434 (39%), Gaps = 61/434 (14%) Query: 4 NLRNIAIIAHVDHGKTTLVDKLLQQSGTLDR--STEGQERIMDSNDLERERGITILAKNT 61 + NI ++AHVD GKTTL + LL SG + S + D+ LER+RGITI T Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 62 AIRWNDYRINIVDTPGHADFGGEVERVLSMVDSVLLLVDAVDGPMPQTRFVTQKAFAQGL 121 + +W + ++NI+DTPGH DF EV R LS++D +LL+ A DG QTR + G+ Sbjct: 62 SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGI 121 Query: 122 KPIVVINKIDRPGARPDWVMDQVFD-------------LFDNLGATD----EQLDF---- 160 I INKID+ G V + + L+ N+ T+ EQ D Sbjct: 122 PTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEG 181 Query: 161 ------KVVYASALNG---WATMDQDVESDNMEPLF--------------QAIVDNVEAP 197 K + +L + ++ P++ + I + + Sbjct: 182 NDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSS 241 Query: 198 KADADGGFQMQISQLDYNSYVGVIGIGRITRGRVKTNQQVTIVGADGKSRTGKVGQVLGY 257 ++ +++Y+ + R+ G + V I + T + G Sbjct: 242 THRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKIKITEMYTSING- 300 Query: 258 LGLSRTEVADAQAGDIIAITGLGELKISDTICDNGAVEALPPLSVDEPTVNMTFQVNTSP 317 ++ A +G+I+ + LK++ + D + + P + T + + Sbjct: 301 ---ELCKIDKAYSGEIVILQNEF-LKLNSVLGDTKLLPQRERIENPLPLLQTTVEPSKPQ 356 Query: 318 FAGKEGKFVTSRNILERLNQELVHNVALRVEETDDPDKFRVSGRGELHLSILIENMRRE- 376 +L+ L + + LR + +S G++ + + ++ + Sbjct: 357 QREM---------LLDALLEISDSDPLLRYYVDSATHEIILSFLGKVQMEVTCALLQEKY 407 Query: 377 GYELAVSRPEVILR 390 E+ + P VI Sbjct: 408 HVEIEIKEPTVIYM 421 Score = 34.4 bits (79), Expect = 0.002 Identities = 13/89 (14%), Positives = 29/89 (32%), Gaps = 1/89 (1%) Query: 389 LRTVDGVLQEPFETVTVDVEEAHQGSVMEQLGLRKGEMTNMTPDGKGRVRLDFMIPSRGL 448 L+ L EP+ + + + + + + V L IP+R + Sbjct: 528 LKKAGTELLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQLKN-NEVILSGEIPARCI 586 Query: 449 IGFQTEFMTLTSGTGLLYHTFDHYGPHKG 477 ++++ T+G + Y G Sbjct: 587 QEYRSDLTFFTNGRSVCLTELKGYHVTTG 615
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 571 bits (1474), Expect = 0.0 Identities = 194/479 (40%), Positives = 298/479 (62%), Gaps = 15/479 (3%) Query: 3 AKVWIVDDDSSIRWVLERTLGSEGFECESFADGEALLSSLEMRSPDVILSDIRMPGIDGL 62 A + + DDD++IR VL + L G++ ++ L + D++++D+ MP + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 63 SLLEQIHRRQADLPIIIMTAHSDLDSAVNAYQRGAFEYLPKPFDIDEAVTLVRRAENHLK 122 LL +I + + DLP+++M+A + +A+ A ++GA++YLPKPFD+ E + ++ RA L Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRA---LA 120 Query: 123 EQRTKRKARQQDPASSPEIIGEAPAMQEVFRAIGRLSRSSISVLINGQSGTGKELVAHAL 182 E + + + D ++G + AMQE++R + RL ++ ++++I G+SGTGKELVA AL Sbjct: 121 EPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARAL 180 Query: 183 HKHSPRAHKNFIALNMAAIPKDLIESELFGHEKGAFTGANNIRHGRFEQADGGTLFLDEI 242 H + R + F+A+NMAAIP+DLIESELFGHEKGAFTGA GRFEQA+GGTLFLDEI Sbjct: 181 HDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEI 240 Query: 243 GDMPLDVQTRLLRVLADGQFYRVGGHQPVQVDVRIIAATHQNLEKRVADGEFREDLFHRL 302 GDMP+D QTRLLRVL G++ VGG P++ DVRI+AAT+++L++ + G FREDL++RL Sbjct: 241 GDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRL 300 Query: 303 NVIRIHIPALKERREDIPQLAQHFLLRAAKELNVEAKSLHPDTQAYISRLPWPGNVRQLE 362 NV+ + +P L++R EDIP L +HF+ +A KE ++ K + + PWPGNVR+LE Sbjct: 301 NVVPLRLPPLRDRAEDIPDLVRHFVQQAEKE-GLDVKRFDQEALELMKAHPWPGNVRELE 359 Query: 363 NVCRWLTVMASGQEVLVSDLPTELLTPITSTAEPGQPALSGGWQQQLQDWVAAKL----- 417 N+ R LT + + + EL + I P + A + + V + Sbjct: 360 NLVRRLTALYPQDVITREIIENELRSEI--PDSPIEKAAARSGSLSISQAVEENMRQYFA 417 Query: 418 ----ALGETDILADALPQFERIMLETALDHTHGHKQEAARLLGWGRNTLTRKLKELDLS 472 AL + + L + E ++ AL T G++ +AA LLG RNTL +K++EL +S Sbjct: 418 SFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGVS 476
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 27.7 bits (61), Expect = 0.017 Identities = 12/36 (33%), Positives = 19/36 (52%) Query: 107 GILRRAMNAFLEVLGEYTLADAVRDPTRLCHLLGIE 142 G L A AF+E + + + DAV D + H + +E Sbjct: 156 GCLVTACEAFMEDIKAFFVGDAVADFSLEKHQMALE 191
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 30.3 bits (68), Expect = 0.018 Identities = 20/90 (22%), Positives = 31/90 (34%), Gaps = 17/90 (18%) Query: 45 VVGLNGAGKSCFFNYLTDQSYSKI----SFKKHTITLNDGNV-----------LHFPGDK 89 VVGL G G S + T+QS + N N+ PG + Sbjct: 51 VVGLQGTGDSLRSSPFTEQSMRAMLQNLGITTQGGQSNAKNIAAVMVTANLPPFASPGSR 110 Query: 90 INATVIDI--SKELRNSTKALLDVKSTWGQ 117 ++ TV + + LR + + GQ Sbjct: 111 VDVTVSSLGDATSLRGGNLIMTSLSGADGQ 140
>LIPPROTEIN48#Mycoplasma P48 major surface lipoprotein signature. Length = 428 Score = 63.9 bits (155), Expect = 2e-13 Identities = 69/300 (23%), Positives = 120/300 (40%), Gaps = 33/300 (11%) Query: 29 ITIKDTIVTKVLKLATVA--ALTLAALSAQAASQPAVIYDTAGKFDKSFNEAVFRNGVEV 86 I+ K+ ++K + A L +P +I D DKSFN++ F ++ Sbjct: 33 ISFKEKDISKYTTTNANGKQVVKNAELLKL---KPVLITDEGKIDDKSFNQSAFE-ALKA 88 Query: 87 YNKDKGVKVKEFEPQNEAQREQGLRRLASRGNGPIVAVGFNMGSAVEKV----ATEFPKT 142 NK G+++ EP + E S G+ V GF ++++ E + Sbjct: 89 INKQTGIEINNVEPSS--NFESAYNSALSAGHKIWVLNGFKHQQSIKQYIDAHREELERN 146 Query: 143 QFTII----DMVVDKPNVQSVIFKEHEGSFLVG-ALAAIASKTGK----VGFVGGMDIPL 193 Q II D+ + S+ F E +F G A+A+ S+ + V GG P Sbjct: 147 QIKIIGIDFDIETEYKWFYSLQFNIKESAFTTGYAIASWLSEQDESKRVVASFGGGAFPG 206 Query: 194 IRKFECGYEQGAKYVN---PKIEVFQNMTGSTPAAFADPAKGAEL-------AKSQFAKG 243 + F G+ +G Y N +++ + F K + + Sbjct: 207 VTTFNEGFAKGILYYNQKHKSSKIYHTSPVKLDSGFTAGEKMNTVINNVLSSTPADVKYN 266 Query: 244 ADVVYAAAGGTGIGVYQAAKDEGKLAIGVDSNQNHLQ-PGTMLTSMVKSVGLAAYQTWDD 302 V+ + AG + A ++G+ IGVDS+Q +Q +LTS++K + A Y+T D Sbjct: 267 PHVILSVAGPATFETVRLA-NKGQYVIGVDSDQGMIQDKDRILTSVLKHIKQAVYETLLD 325
>OMPTIN#Omptin serine protease signature. Length = 317 Score = 23.8 bits (51), Expect = 0.031 Identities = 13/40 (32%), Positives = 15/40 (37%), Gaps = 7/40 (17%) Query: 10 SMGGHKPDYDLDDDWEPESWEEELDEWEDESWQDDDPLDD 49 S GG+ D D D P W DES D L+ Sbjct: 96 SRGGNMVDQDWMDSSNPG-------TWTDESRHPDTQLNY 128
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 32.1 bits (73), Expect = 0.003 Identities = 12/28 (42%), Positives = 15/28 (53%) Query: 151 ILVTGAAGGVGSTAVALLAALGYQVAAL 178 LVTGAAG +G L G+QV + Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVGI 30
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 227 bits (579), Expect = 2e-79 Identities = 78/154 (50%), Positives = 110/154 (71%) Query: 4 KVIYPGTFDPVTNGHTDLIGRAAKLFDEVVVGVANSPSKRPLFDLDERVQLARQVTAHLP 63 IYPG+FDP+T GH D+I R +LFD+V V V +P+K+P+F + ER++ + AHLP Sbjct: 2 NAIYPGSFDPITFGHLDIIERGCRLFDQVYVAVLRNPNKQPMFSVQERLEQIAKAIAHLP 61 Query: 64 NVKVVGFSGLLVDFAREQQANVLIRGLRAVSDFEYEFQLANMNRRLMPELESVFLTPAEE 123 N +V F GL V++AR++QA ++RGLR +SDFE E Q+AN N+ L +LE+VFLT + E Sbjct: 62 NAQVDSFEGLTVNYARQRQAGAILRGLRVLSDFELELQMANTNKTLASDLETVFLTTSTE 121 Query: 124 NSFISSTLVKEVALHGGDIRQFVDPAVAAAIKAK 157 SF+SS+LVKEVA GG++ FV VAAA+ + Sbjct: 122 YSFLSSSLVKEVARFGGNVEHFVPSHVAAALYDQ 155
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 36.3 bits (84), Expect = 2e-04 Identities = 53/277 (19%), Positives = 99/277 (35%), Gaps = 37/277 (13%) Query: 39 PVSQVAFAFGLL----SLSLAVASSLAGKLQERFGVRNVTLGAGVLLGIGFFLTAHASNL 94 + V +G+L +L + + G L +RFG R V L + + + + A A L Sbjct: 37 HSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFL 96 Query: 95 AMLYLCAGILVGFADGTGY--------LMTLSNCVKWFPERKGLISACSIGAYGLGSLGF 146 +LY+ I+ G TG + + F G +SAC +G G + Sbjct: 97 WVLYI-GRIVAGITGATGAVAGAYIADITDGDERARHF----GFMSAC----FGFGMVAG 147 Query: 147 KYINLLLLSSNGLETTFQLWGLIAMSMVLVGGMLMKDAPKQ----AAAVQQSESRDFTLA 202 + L+ F + L G L+ ++ K + F A Sbjct: 148 PVLG-GLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWA 206 Query: 203 EAMRKPQYWMLALMFLTACMSG----LYVIGVAKDIGENMVGLPAVVAANAVAII-AMAN 257 M ++A+ F+ + L+VI GE+ A ++A + + Sbjct: 207 RGMT-VVAALMAVFFIMQLVGQVPAALWVI-----FGEDRFHWDATTIGISLAAFGILHS 260 Query: 258 LGGRLVLGILSDKMSRIRVITIAQLITLAGMALLLFV 294 L ++ G ++ ++ R + + + G LL F Sbjct: 261 LAQAMITGPVAARLGERRALMLGMIADGTGYILLAFA 297
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 64.1 bits (156), Expect = 5e-14 Identities = 23/129 (17%), Positives = 57/129 (44%), Gaps = 4/129 (3%) Query: 3 KAIIVEDEYLAREELAYLVGQHSTIEIVASFEDGLEAFKYLQDHEVDVVFLDIQIPSIDG 62 ++ +D+ R L + + V + ++++ + D+V D+ +P + Sbjct: 5 TILVADDDAAIRTVLNQALSRAG--YDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 63 LLLAKNLHKSSHPPHIVFVTAYKEF--AVEAFELEAFDYILKPYNEPRLISLLQKLELAG 120 L + K+ ++ ++A F A++A E A+DY+ KP++ LI ++ + Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122 Query: 121 KSQTGQGSE 129 K + + + Sbjct: 123 KRRPSKLED 131
>PF06580#Sensor histidine kinase Length = 349 Score = 198 bits (506), Expect = 7e-61 Identities = 61/205 (29%), Positives = 111/205 (54%), Gaps = 13/205 (6%) Query: 345 EQLKEMTRKAEFTALQSKINPHFLFNALNAISSLIRIRPQQARQLIANLADYLRYNLNKG 404 ++ M ++A+ AL+++INPHF+FNALN I +LI P +AR+++ +L++ +RY+L Sbjct: 152 WKMASMAQEAQLMALKAQINPHFMFNALNNIRALILEDPTKAREMLTSLSELMRYSLRYS 211 Query: 405 DT-LIDIQEELQQVRDYVAIEQARFGDKLEVVFEVDD--VHIQVPSLLLQPLVENAILHG 461 + + + +EL V Y+ + +F D+L+ +++ + +QVP +L+Q LVEN I HG Sbjct: 212 NARQVSLADELTVVDSYLQLASIQFEDRLQFENQINPAIMDVQVPPMLVQTLVENGIKHG 271 Query: 462 IQPRSAPGRVTIEVKQLAGGIRVAVRDTGYGISQAVIDGVAAGRVESRSIGLMNVHQRVK 521 I G++ ++ + G + + V +TG ES GL NV +R++ Sbjct: 272 IAQLPQGGKILLKGTKDNGTVTLEVENTG--------SLALKNTKESTGTGLQNVRERLQ 323 Query: 522 LLYGD--GLHLKRLEPGTEVSFYLP 544 +LYG + L + +P Sbjct: 324 MLYGTEAQIKLSEKQGKVNAMVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 79.5 bits (196), Expect = 3e-17 Identities = 36/167 (21%), Positives = 64/167 (38%), Gaps = 8/167 (4%) Query: 952 RLRVMIVDDHPTNRLLVSQQLAYLGHDATAAESGREALALFANTPFDVMITDFNMPGMSG 1011 +++ DD R +++Q L+ G+D + A D+++TD MP + Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 1012 FELTRQYRALELSRGTHRCLILGLTADARQEQVSEGLTAGMDDCLFKPVGLEELERCLCR 1071 F+L + + +L ++A + G D L KP L EL + R Sbjct: 63 FDLLPRIKKAR-----PDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117 Query: 1072 HMQHEEQREIERCVQEIKQCLGPLTGNQPALMLPLLHEFVRASDDDL 1118 + ++R + ++ Q PL G A M + R DL Sbjct: 118 ALAEPKRRPSKL--EDDSQDGMPLVGRSAA-MQEIYRVLARLMQTDL 161
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 75.6 bits (186), Expect = 3e-18 Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 1/102 (0%) Query: 2 AKILVVDDHPAIRMAVNILLQQDDHHIVAEVDNGVDAVLMARKYQPDMVVLDIGIPRLDG 61 A ILV DD AIR +N L + + + N D+VV D+ +P + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 62 IEVIKRLKEMDADIKVVILSAQATHHIMVRCLQAGANGFISK 103 +++ R+K+ D+ V+++SAQ T ++ + GA ++ K Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPK 104
>OUTRMMBRANEA#Outer membrane protein A signature. Length = 346 Score = 39.9 bits (93), Expect = 3e-06 Identities = 20/37 (54%), Positives = 21/37 (56%), Gaps = 4/37 (10%) Query: 1 MKKTLIALTVAGLGFAAAAQAAVEATPAIATWKATAK 37 MKKT IA+ VA GFA AQAA P TW AK Sbjct: 1 MKKTAIAIAVALAGFATVAQAA----PKDNTWYTGAK 33
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 53.7 bits (129), Expect = 2e-09 Identities = 94/673 (13%), Positives = 185/673 (27%), Gaps = 107/673 (15%) Query: 179 YNLGYSFNSNRQNGHSDSNFLQLDSTVGMGAHHMALDASL-YNLGEPEQSGDIY----RA 233 YN + NR G+S +L L S + +GA + + + YN + Sbjct: 189 YNFSGNSVQNRIGGNSHYAYLNLQSGLNIGAWRLRDNTTWSYNSSDSSSGSKNKWQHINT 248 Query: 234 MYERDLDDRRIAAGMVSTWDLQTLGVVTGLSTGRIYGASYGNQAQSRKQKADTSTTPVQV 293 ERD+ R ++ D T G + GA + D+ V Sbjct: 249 WLERDIIPLR---SRLTLGDGYTQGDI--FDGINFRGAQLASDDNML---PDSQRGFAPV 300 Query: 294 FM---PANGEVRVYREDRLISLQNLAIGNQNIDTSAFPSGVYNVTVEVY-VDGRLTSTTT 349 +V + + I + G I+ ++ V + DG T Sbjct: 301 IHGIARGTAQVTIKQNGYDIYNSTVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTV 360 Query: 350 --------QR--VTKLGGSLGFTQEWG------WQWWGGMMEGAQNN--------GDSPL 385 QR T+ + G + + ++ G Sbjct: 361 PYSSVPLLQREGHTRYSITAGEYRSGNAQQEKPRFFQSTLLHGLPAGWTIYGGTQLADRY 420 Query: 386 LGVSLARSLDTLEL----ATTTYAFKDAAVGEARANWQATDRVSAQLQTMLASDQ--SWR 439 + + L T A + L + Q +R Sbjct: 421 RAFNFGIGKNMGALGALSVDMTQANSTLPDDSQHDGQSVRFLYNKSLNESGTNIQLVGYR 480 Query: 440 FAS------SLALQAHDNASLWLSQEKLETGSALTVSNAEL-------YSAGITLNLGGW 486 +++ + + N +Q+ + L +T LG Sbjct: 481 YSTSGYFNFADTTYSRMNGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRT 540 Query: 487 VSGLGQLTFNTLHDRQMNSDRSYADYYQHLYAGKYGNLSLRASLQSDSGTLNGFNNKSIT 546 L + H + + +Q + +++ S ++ + Sbjct: 541 ----STLYLSGSHQTYWGTSNV-DEQFQAGLNTAFEDINWTLSYSLTKNAWQKGRDQMLA 595 Query: 547 LDYSIPFDNLF-------------SFGMSSNEQGQTTANVNYQKRMDGVINLA-SFNASR 592 L+ +IPF + S+ MS + G+ T + NL+ S Sbjct: 596 LNVNIPFSHWLRSDSKSQWRHASASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGY 655 Query: 593 MMHGSDEHNMALSGTLGFENRVIGGTMTLGRGHGGDM-NGNLIARGALVTTEDALVASSR 651 G TL + G +G H D+ G ++ + V + Sbjct: 656 AGGGDGNSGSTGYATLNYRGGY--GNANIGYSHSDDIKQLYYGVSGGVLAHANG-VTLGQ 712 Query: 652 SSSGAGLIINT----GIDRQGQMLAKVNGQDYPLHGEQTFLALPPYGEYEIELLNSKRGK 707 + +++ + Q + + + Y + Y E + L++ Sbjct: 713 PLNDTVVLVKAPGAKDAKVENQTGVRTDWRGYAVLP-----YATEYRENRVA-LDTNTLA 766 Query: 708 DSYDINTGKQRYTLFPGNV--ATLDASSTIKEMVTVFGILRAEDGSLLANARIDNHIGTT 765 D+ D++ G + A A IK ++T+ + L G Sbjct: 767 DNVDLDNAVANVVPTRGAIVRAEFKARVGIKLLMTL-----THNNKPLP-------FGAM 814 Query: 766 VTNEEGEFSLDVD 778 VT+E + S V Sbjct: 815 VTSESSQSSGIVA 827
>DNABINDNGFIS#DNA-binding protein FIS signature. Length = 98 Score = 137 bits (345), Expect = 7e-46 Identities = 70/98 (71%), Positives = 85/98 (86%) Query: 1 MFEQTLTSDALVTTTHNHAAEPTQRPLRDSVQQALRNYLAQLNGQEVIDLYDMVLSEVEA 60 MFEQ + SD L +T N + TQ+PLRDSV+QAL+NY AQLNGQ+V DLY++VL+EVE Sbjct: 1 MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQ 60 Query: 61 PMLDVIMQYTRGNQTRAAVMMGINRGTLRKKLKRYGMN 98 P+LD++MQYTRGNQTRAA+MMGINRGTLRKKLK+YGMN Sbjct: 61 PLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 40.6 bits (95), Expect = 6e-06 Identities = 27/204 (13%), Positives = 64/204 (31%), Gaps = 18/204 (8%) Query: 6 IKKKMSQAKPLLLPLALVLLVIWLGWRFWLAYQPEPVRLQGQIEAQQYS--VSSKVAGRI 63 I+ +S+ L+ + LVI L G++ S + + Sbjct: 49 IETPVSRRPRLVAYFIMGFLVIAFIL-SVLGQVEIVATANGKLTHSGRSKEIKPIENSIV 107 Query: 64 DEVLVKKGDQLAKDQLVFTLASPEIEAKLSQAKAGQAAAGAMAEEAEKGARAQQIAAAKD 123 E++VK+G+ + K ++ L + EA + ++ A + +R+ ++ + Sbjct: 108 KEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPE 167 Query: 124 QWQKAKAAALLRGKTYERIASLHRDGVMPLQKRDEAWTAWQAAKYSEGMAWQQYQMTLEG 183 + + + + E ++ WQ KY + + + + Sbjct: 168 LKLPDEPYFQNVSE---------EEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLT 218 Query: 184 AREETKIAAREQAKMAAGGVAEVE 207 AR V + Sbjct: 219 VL------ARINRYENLSRVEKSR 236
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 29.1 bits (65), Expect = 0.027 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 1/59 (1%) Query: 294 APGFAFMGVTFPVSAMGDFAQFWRSLLPISHYVELQIGQTNYGQPLAAALPQFGALLLF 352 P G FPV + Q LP+SH ++L I G P+ GAL ++ Sbjct: 187 TPILFLSGAVFPVDQLPIVFQTAARFLPLSHSIDL-IRPIMLGHPVVDVCQHVGALCIY 244
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 29.2 bits (65), Expect = 0.010 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 6/66 (9%) Query: 5 LIFGASRGLGRAFTEQALQQGQRVIALIRSPE----VVTELRALG--VEVVNGDALDPQA 58 I GA++G+G A QG + A+ +PE VV+ L+A E D D A Sbjct: 12 FITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDSAA 71 Query: 59 VTAACQ 64 + Sbjct: 72 IDEITA 77
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 99 bits (249), Expect = 1e-25 Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 3/124 (2%) Query: 1 MSKAGLRILVVEDEAVFRHSLVNYLAHDGACVFQAEDGIEGLSAAALYHPDVVLCDLNMP 60 M+ A ILV +D+A R L L+ G V + A D+V+ D+ MP Sbjct: 1 MTGA--TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMP 58 Query: 61 NMDGHEVIACLTARYPHIPVIVISAQSKMEAVERALRAGARDFLLKPISDFGQVRRSIEQ 120 + + +++ + P +PV+V+SAQ+ +A GA D+L KP D ++ I + Sbjct: 59 DENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPF-DLTELIGIIGR 117 Query: 121 CLST 124 L+ Sbjct: 118 ALAE 121
>PF06057#Type IV secretory pathway VirJ component Length = 243 Score = 31.7 bits (72), Expect = 0.002 Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 11/92 (11%) Query: 34 VKRILLIPYAVIRSDWDARALELSESLGVEAISIH---QFDDPVDAINHADAIFISGGNT 90 I ++ ++ S +A A E +++LG+ + + Q + IF+SG Sbjct: 3 KSLIKILSVLLLCSTANAFADEFADNLGLTLLPVEPSTQVNAASSHTKPPLVIFLSGDGG 62 Query: 91 WRLNQLLHENGLVVPIQRAVRERGVPYVGWSA 122 W L + ++++G P VGWS+ Sbjct: 63 WA--------TLDKAVGGILQQQGWPVVGWSS 86
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 64.9 bits (158), Expect = 3e-14 Identities = 28/121 (23%), Positives = 50/121 (41%), Gaps = 5/121 (4%) Query: 3 TALIVDDEPLAREELRLLLEQTGNIRLLGECAHAMEALPAIHRLKPDLLFLDIQMPRISG 62 T L+ DD+ R L L + G + ++A I DL+ D+ MP + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRI--TSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 63 LELV-SMLDPDLRPHIVFITAYDEF--ALRAFEENALDYLLKPVTAERMNKALERIQRLL 119 +L+ + ++ ++A + F A++A E+ A DYL KP + + R Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122 Query: 120 S 120 Sbjct: 123 K 123
>PF06580#Sensor histidine kinase Length = 349 Score = 231 bits (590), Expect = 5e-73 Identities = 62/198 (31%), Positives = 112/198 (56%), Gaps = 3/198 (1%) Query: 363 NEQKRLLAQSEIKLLQAQINPHFLFNALNTLAAVIRRDPEDARTLVHHLSTFFRKNLKR- 421 + + ++++ L+AQINPHF+FNALN + A+I DP AR ++ LS R +L+ Sbjct: 152 WKMASMAQEAQLMALKAQINPHFMFNALNNIRALILEDPTKAREMLTSLSELMRYSLRYS 211 Query: 422 QGDEVTLADELEHVNAYLHIEQARFAEHLSVQIQIPEPLLEYRLPTFSLQPIVENAIKHG 481 +V+LADEL V++YL + +F + L + QI +++ ++P +Q +VEN IKHG Sbjct: 212 NARQVSLADELTVVDSYLQLASIQFEDRLQFENQINPAIMDVQVPPMLVQTLVENGIKHG 271 Query: 482 ISQMFEPGRLTLTARQEGEQLVLEVCDNAGL-YQAKREESGLGMNIVDRRIKARYGAEYG 540 I+Q+ + G++ L ++ + LEV + L + +E +G G+ V R++ YG E Sbjct: 272 IAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKESTGTGLQNVRERLQMLYGTEAQ 331 Query: 541 VTIHCEPHQSTRVRITLP 558 + + + + + +P Sbjct: 332 IKLSEKQGK-VNAMVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 84.5 bits (209), Expect = 2e-21 Identities = 27/155 (17%), Positives = 61/155 (39%), Gaps = 7/155 (4%) Query: 6 RPPLYLVDDDEAVLDSLRFMLESCDERQLFSFADGERFLAEVDLHQPACLILDCRMPGLS 65 + + DDD A+ L L ++ + ++ D MP + Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVR-ITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 66 GPEVQQRLKAAQSPIAILFLTGHGEVPLAVESLKLGAVDFLQKPVQLAPLLAAIERAEQA 125 ++ R+K A+ + +L ++ A+++ + GA D+L KP L L+ I RA Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 126 TLSAATRFAQLAAYQRL-----TPREHQLLQLIAR 155 ++ + + + + ++ +++AR Sbjct: 122 PKRRPSK-LEDDSQDGMPLVGRSAAMQEIYRVLAR 155
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.8 bits (67), Expect = 0.037 Identities = 17/111 (15%), Positives = 31/111 (27%), Gaps = 12/111 (10%) Query: 403 QRRLLKARHQLEQKGRQLAQ-----ARRLAELGELGANV------AHEINQPLSAIAN-Y 450 R + Q Q Q ++ AE + A + + L ++ Sbjct: 185 LRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLL 244 Query: 451 SQGALLRLDKLAQDPAQAAAQASLRQALEQIGLQVQRITQTVNRLRARLQK 501 + A+ + L Q+ A LR Q+ I + Q Sbjct: 245 HKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQL 295
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 36.5 bits (84), Expect = 2e-05 Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 1/87 (1%) Query: 79 VAPAEEEPLGYLWHAIDSDGTATFIYDFYVAPAHRSRGIGKAAMALLEAELRRSGIRQIT 138 + E +G + + +G A I D VA +R +G+G A + + + + Sbjct: 69 LYYLENNCIGRIKIRSNWNGYAL-IEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLM 127 Query: 139 LRVAHDNPRALALYQEAGFSITGYNMA 165 L N A Y + F I + Sbjct: 128 LETQDINISACHFYAKHHFIIGAVDTM 154
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 28.3 bits (63), Expect = 0.048 Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 12/53 (22%) Query: 177 EQALEVFRETPPDVFNHNLETAPRMYRVARPGADYKWSLELLRRIKEMHPHVP 229 D+ + T M P + + +LL RIK+ P +P Sbjct: 37 ATLWRWIAAGDGDL----VVTDVVM-----PDEN---AFDLLPRIKKARPDLP 77
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 37.1 bits (86), Expect = 7e-05 Identities = 27/147 (18%), Positives = 54/147 (36%), Gaps = 11/147 (7%) Query: 3 KFARSVILASLISATAQANTPVPTPNANPVVVPAAPEISAKAHI---LIDYYSGQVLAEQ 59 ++ R I++ L + + + P+ E + +D SG+ L Sbjct: 2 RYIRLCIISLLATLPLAVH-----ASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAW 56 Query: 60 NAEERLPPASLTKMMTSYIIGQELLKGNIKRTDMVTISQNAWSKNYSDSSKMFIEVGKQV 119 A+ER P S K++ + + G+ + + Q +YS S+ + + Sbjct: 57 RADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDL-VDYSPVSEKH--LADGM 113 Query: 120 SVDDLNKGIIIQSGNDACVAMAEFLAG 146 +V +L I S N A + + G Sbjct: 114 TVGELCAAAITMSDNSAANLLLATVGG 140
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 33.0 bits (75), Expect = 0.001 Identities = 14/47 (29%), Positives = 24/47 (51%) Query: 9 PLSLTLLLAACSSQPEQLPPPPEPIQPEKPQVIEIPQATGAIPRPEP 55 P+S+T++ A P+ + PPPEP+ +P+ IP+ P Sbjct: 44 PISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIE 90
>INFPOTNTIATR#Macrophage infectivity potentiator signature. Length = 233 Score = 123 bits (311), Expect = 3e-38 Identities = 61/133 (45%), Positives = 83/133 (62%), Gaps = 2/133 (1%) Query: 25 KQAVENVRKGAEFLAANKEKPLVTTTASGLQYEVLTPGTGTIHPTATSKVKVHYEGKLLD 84 K+A EN KG FL+ANK KP + SGLQY+++ GTG P + V V Y G L+D Sbjct: 99 KKAEENKAKGDAFLSANKSKPGIVVLPSGLQYKIIDAGTGA-KPGKSDTVTVEYTGTLID 157 Query: 85 GTIFDSSVARGEPIEFGLNQVIAGWTEGVQLMVEGEKTRFYIPANLAYGDRA-AGKIPPG 143 GT+FDS+ G+P F ++QVI GWTE +QLM G ++PA+LAYG R+ G I P Sbjct: 158 GTVFDSTEKAGKPATFQVSQVIPGWTEALQLMPAGSTWEVFVPADLAYGPRSVGGPIGPN 217 Query: 144 SVLIFDVELLGIQ 156 LIF + L+ ++ Sbjct: 218 ETLIFKIHLISVK 230
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 705 bits (1821), Expect = 0.0 Identities = 220/1055 (20%), Positives = 435/1055 (41%), Gaps = 46/1055 (4%) Query: 5 IIRWSVGNRFLVLLLTVMLTAWGLWSVKQTPVDALPDLSDVQVIIKTAYPGQAPQVVEDQ 64 + + + +L ++L G ++ Q PV P ++ V + YPG Q V+D Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 65 VTYPLTTAMLAVPGATTVRGYSF-FGDSFVYVLFDDNTDLYWARARVLEYLSQVAPNLP- 122 VT + M + + S G + + F TD A+ +V L P LP Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 123 ASARPQLGPDATGVGWVYQYALVDRTGKHDLSELTSLQNWFLKYELQTVEGVSEVATVGG 182 + + + + ++ V +++ +K L + GV +V G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 183 MVRQYQVRVDPDKLRAYGIPLSLIETAIKQGNQETGASVIEMA------EAEYMVRSNGY 236 ++ +D D L Y + + +K N + A + + + + Sbjct: 181 Q-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 237 LKSVEDLKQIPLGTTVRGAPLLLGDVADVVTGPQSRRGLAELNGEGEVVGGIIVMRYGEN 296 K+ E+ ++ L G+ + L DVA V G ++ +A +NG+ G I + G N Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGK-PAAGLGIKLATGAN 298 Query: 297 AQHTIDGVKARLAQLKSSLPEGVQVVTVYDRSDLIQRAIDNLSGKLVEEFAVVVLVCLAF 356 A T +KA+LA+L+ P+G++V+ YD + +Q +I + L E +V LV F Sbjct: 299 ALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLF 358 Query: 357 LFHLRSSLVVVISLPIAILTAFIVMHLQGINANIMSLGGIAIAIGAMVDGAIVMIENVHK 416 L ++R++L+ I++P+ +L F ++ G + N +++ G+ +AIG +VD AIV++ENV + Sbjct: 359 LQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER 418 Query: 417 HMEREALTDKNRWRIITEASIEVGPAIFFSLLIITISFLPVFALEAQEGRMFHPLAYTKT 476 M + L ++ ++ A+ ++++ F+P+ G ++ + T Sbjct: 419 VMMEDKL---PPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIV 475 Query: 477 YAMAAAAGLAITLVPVIMGYFIRGKVLAEQ---------ANPLNRWLSQGYVPLLKAVLA 527 AMA + +A+ L P + ++ N Y + +L Sbjct: 476 SAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILG 535 Query: 528 RPNTTLAIAAVVTVAGFWPLKYLGSEFIPPLDEGDIMYMPTTAANISVGKAREILQQTDK 587 L I A++ L S F+P D+G + M A + + +++L Q Sbjct: 536 STGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTD 595 Query: 588 --LIRTVPEVQNVFGKAGRAESATDPADLVMMETSIQLKPRDQW-RPGMTPEKLKEELDS 644 L V++VF G + S + + LKP ++ + E + Sbjct: 596 YYLKNEKANVESVFTVNGFSFSGQAQNAGMAF---VSLKPWEERNGDENSAEAVIHRAKM 652 Query: 645 LIRFPGLTNAWVPPIKTR--IDMLATGIKTPVGIKIAGPDLKVIQQLGQQLEQIVGKVEG 702 + + +V P +++ I AG + Q QL + + Sbjct: 653 --ELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPA 710 Query: 703 A-SSVYAERVAGGRYVKVDIDRLKAARYGLNIADVQAVLATAVGGMEVGQTIEGRERYPI 761 + SV + K+++D+ KA G++++D+ ++TA+GG V I+ + Sbjct: 711 SLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKL 770 Query: 762 NLRYPQSYRDSVASLELLPLVTPSGARIALADVARVYISDEAPMLRSENARLNGWVYVDI 821 ++ +R ++ L + + +G + + + +P L R NG ++I Sbjct: 771 YVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLE----RYNGLPSMEI 826 Query: 822 RGRDI-GSFVAQAKAEVDKQLV-LPAGYALTWSGQFEYMERAKARLAYVVPLTVAIIVLL 879 +G G+ A A ++ LPAG W+G + + +V ++ ++ L Sbjct: 827 QGEAAPGTSSGDAMALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLC 886 Query: 880 LYLAFRRFQEVLLILTTLPLAVVGGIWTLWLLDFNLSVAVGVGFIALAGVAVETGVLMLV 939 L + + + ++ +PL +VG + L + V VG + G++ + +L++ Sbjct: 887 LAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVE 946 Query: 940 YLNHAWDDLVASGKPDKAGLHRAVIHGAALRLRPKMMTVVTIIAGLLPIMWSHGTGSEVM 999 + + GK + A + +RLRP +MT + I G+LP+ S+G GS Sbjct: 947 FAKDLME---KEGKG----VVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQ 999 Query: 1000 QRIAAPMIGGMVSALVLTLLVLPAAYYLWRSRHLG 1034 + ++GGMVSA +L + +P + + R G Sbjct: 1000 NAVGIGVMGGMVSATLLAIFFVPVFFVVIRRCFKG 1034
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 46.0 bits (109), Expect = 3e-07 Identities = 36/156 (23%), Positives = 55/156 (35%), Gaps = 20/156 (12%) Query: 171 GKLKSLQVPADQIAA-LKRSRQVQETVRIYAPSSGYVSELKVR-EGQYVEPAAALFNIST 228 KL+ + L ++ + Q+ I AP S V +LKV EG V A L I Sbjct: 302 DKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVP 361 Query: 229 LKQV-WVSAEVFERQAAQLKVGDPVTMTLDYAPGRSW---QGRVDYLYPTLDAAT----- 279 V+A V + + VG + ++ P + G+V + LDA Sbjct: 362 EDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNI--NLDAIEDQRLG 419 Query: 280 -------RTLKVRLRFANPDEFLKPNMFAKVSIRTG 308 + L N + L M I+TG Sbjct: 420 LVFNVIISIEENCLSTGNKNIPLSSGMAVTAEIKTG 455 Score = 32.9 bits (75), Expect = 0.003 Identities = 11/65 (16%), Positives = 29/65 (44%), Gaps = 6/65 (9%) Query: 165 LLRAAEGKLKSLQVPADQIAALKRSRQVQETVRIYAPSSGYVSELKVREGQYVEPAAALF 224 + + G+++ + ++ RS++++ + V E+ V+EG+ V L Sbjct: 72 FILSVLGQVEIVATANGKLTHSGRSKEIK------PIENSIVKEIIVKEGESVRKGDVLL 125 Query: 225 NISTL 229 ++ L Sbjct: 126 KLTAL 130
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1040 bits (2690), Expect = 0.0 Identities = 453/1035 (43%), Positives = 641/1035 (61%), Gaps = 13/1035 (1%) Query: 3 SKFFIERPIFASVISIIIVLGGLAAMRSLPIEQYPQITPPVVSVTAFYPGATPEVISQTV 62 + FFI RPIFA V++II+++ G A+ LP+ QYP I PP VSV+A YPGA + + TV Sbjct: 2 ANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTV 61 Query: 63 AAPLEQQINGVERMLYMQSGSASNGQMNLNVYFEIGTDPDQATINVNNRVSAAMAQLPEE 122 +EQ +NG++ ++YM S S S G + + + F+ GTDPD A + V N++ A LP+E Sbjct: 62 TQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQE 121 Query: 123 VKKQGVTVKKKSTSILQVVTLQSPDGTFDTTYLSNYALLNIIDELKRIPGVGDTTLFGGT 182 V++QG++V+K S+S L V S + +S+Y N+ D L R+ GVGD LFG Sbjct: 122 VQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA- 180 Query: 183 DYAMRIWLRPDRLAQLELTPSDVIGAIREQNTQFAAGKIGAQPTTAPIDFTYTVQTKGRL 242 YAMRIWL D L + +LTP DVI ++ QN Q AAG++G P ++ + R Sbjct: 181 QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240 Query: 243 EDVREFQNIIIRSMPDGSKIRVKDVARVELGGKDYDLLAKANGKPAIGIATYLQPGANAV 302 ++ EF + +R DGS +R+KDVARVELGG++Y+++A+ NGKPA G+ L GANA+ Sbjct: 241 KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300 Query: 303 AVADQVHATMLRLKERFPQDIEYQIPYDTTEFVKISIEEVVHTLFEAIVLVFVVVYLFLQ 362 A + A + L+ FPQ ++ PYDTT FV++SI EVV TLFEAI+LVF+V+YLFLQ Sbjct: 301 DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360 Query: 363 NFRATLIPCIAVPVSLIGTFAGMLVLGFSINLLTLFGMVLAIGIVVDDAIVVLENVERIM 422 N RATLIP IAVPV L+GTFA + G+SIN LT+FGMVLAIG++VDDAIVV+ENVER+M Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 Query: 423 QEKKCSPKEAAILAMQEVSGPVVAIVLVLCAVFLPVAFMGGMTGVMYKQFAITVAVSVAI 482 E K PKEA +M ++ G +V I +VL AVF+P+AF GG TG +Y+QF+IT+ ++A+ Sbjct: 421 MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480 Query: 483 SGLVALTLSPALCAVLLK----EGHHKPARFFVWFNNAFDGLTRRYVRGVAFLNRRVGVA 538 S LVAL L+PALCA LLK E H FF WFN FD Y V + G Sbjct: 481 SVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRY 540 Query: 539 FTIIAFILVSIYGLLMKVPGELVPNEDQGYLLSAVMLPDAASLTRTQAVANDFDQMAMAN 598 I A I+ + L +++P +P EDQG L+ + LP A+ RTQ V + + N Sbjct: 541 LLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKN 600 Query: 599 --PNVKDVITFSGFDILSNAIISNSGISFITLKDWSERQGAGQDSFSLAKTFQGMSLMGL 656 NV+ V T +GF A N+G++F++LK W ER G + ++ + M L + Sbjct: 601 EKANVESVFTVNGFSFSGQA--QNAGMAFVSLKPWEERNGDENSAEAVIHRAK-MELGKI 657 Query: 657 ADGFVASFNPPPITGMSTTGGLEAYLQNRSTGNAQAFSAEVQRFLEAAKQRP-EFASVTS 715 DGFV FN P I + T G + L +++ A + + L A Q P SV Sbjct: 658 RDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRP 717 Query: 716 TYRANVPQVYLDLDREKAKALGLPINAVFDTMQATFGQVYVNDFNQFGRTYRVQLQSEAD 775 + Q L++D+EKA+ALG+ ++ + T+ G YVNDF GR ++ +Q++A Sbjct: 718 NGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAK 777 Query: 776 YRAKKSDIRNVYVRSDKGEMIPLSSLVTVRDATGPELVERFNIFQAAKIMAQPAPGYSSG 835 +R D+ +YVRS GEM+P S+ T G +ER+N + +I + APG SSG Sbjct: 778 FRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSG 837 Query: 836 QAIAALEAVADESLGNDAKLEWTGSAYQEKAAAGSAGTAFGFGIVMIFLILAAQYERWSL 895 A+A +E +A + L +WTG +YQE+ + A V++FL LAA YE WS+ Sbjct: 838 DAMALMENLASK-LPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSI 896 Query: 896 PFAVITAVPFALFGALLATWLVGLTNNVYFQIGLVTLVGLAAKNAILIVEFAV-MKHEEG 954 P +V+ VP + G LLA L N+VYF +GL+T +GL+AKNAILIVEFA + +EG Sbjct: 897 PVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEG 956 Query: 955 MSLIESALEAARLRFRPIVMTSLAFILGCVPLVTSSGAGAASRHALGWPVIGGMLAATFI 1014 ++E+ L A R+R RPI+MTSLAFILG +PL S+GAG+ +++A+G V+GGM++AT + Sbjct: 957 KGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLL 1016 Query: 1015 AIFFIPLFFRLIMRR 1029 AIFF+P+FF +I R Sbjct: 1017 AIFFVPVFFVVIRRC 1031 Score = 71.4 bits (175), Expect = 1e-14 Identities = 55/325 (16%), Positives = 113/325 (34%), Gaps = 20/325 (6%) Query: 723 QVYLDLDREKAKALGLPINAVFDTMQATFGQVYVNDFNQFGRTYRVQLQSEADYRAK--- 779 + + LD + L V + ++ Q+ G Q A A+ Sbjct: 183 AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLG--GTPALPGQQLNASIIAQTRF 240 Query: 780 --KSDIRNVYVRSDK-GEMIPLSSLVTVRDATGPELVE---RFNIFQAAKIMAQPAPGYS 833 + V +R + G ++ L + V G E R N AA + + A G + Sbjct: 241 KNPEEFGKVTLRVNSDGSVVRLKDVARVEL--GGENYNVIARINGKPAAGLGIKLATGAN 298 Query: 834 SGQAIAALEAVADE---SLGNDAKLEWT--GSAYQEKAAAGSAGTAFGFGIVMIFLILAA 888 + A++A E K+ + + + + + T F I+++FL++ Sbjct: 299 ALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLF-EAIMLVFLVMYL 357 Query: 889 QYERWSLPFAVITAVPFALFGALLATWLVGLTNNVYFQIGLVTLVGLAAKNAILIVE-FA 947 + AVP L G G + N G+V +GL +AI++VE Sbjct: 358 FLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVE 417 Query: 948 VMKHEEGMSLIESALEAARLRFRPIVMTSLAFILGCVPLVTSSGAGAASRHALGWPVIGG 1007 + E+ + E+ ++ +V ++ +P+ G+ A ++ Sbjct: 418 RVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSA 477 Query: 1008 MLAATFIAIFFIPLFFRLIMRRSER 1032 M + +A+ P +++ Sbjct: 478 MALSVLVALILTPALCATLLKPVSA 502
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 34.8 bits (80), Expect = 5e-04 Identities = 17/130 (13%), Positives = 46/130 (35%), Gaps = 9/130 (6%) Query: 73 SRVSGILLKRTYIEGQPVTAGQALFLIDPEPYKVALEQAKGTLAQEQARLNKARADRDRI 132 S V I++K EG+ V G L + + + + +L Q + + + I Sbjct: 105 SIVKEIIVK----EGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSI 160 Query: 133 IPLFKRQVVSRKDYDDTIANYE-----AAIASHQAAQAKVKEAELNLSYTQVTAPINGMA 187 ++ + + E ++ Q + + ++ + L+ + A + Sbjct: 161 ELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVL 220 Query: 188 SKSSQSEGSL 197 ++ ++ E Sbjct: 221 ARINRYENLS 230 Score = 29.0 bits (65), Expect = 0.033 Identities = 40/291 (13%), Positives = 80/291 (27%), Gaps = 80/291 (27%) Query: 85 IEGQPVTAGQALFLIDPEPYKVALEQAKGTLAQEQARLNKARADR--------------D 130 + + V +L ++ Q + L +++A A D Sbjct: 179 VSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLD 238 Query: 131 RIIPLFKRQVVSR---KDYDDTIANYEAAIASHQA------------------------- 162 L +Q +++ + ++ + +++ Sbjct: 239 DFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKN 298 Query: 163 ------AQAKVKEAEL---------NLSYTQVTAPINGMASK-SSQSEGSLISTSGENGL 206 Q L + + AP++ + +EG +++T E L Sbjct: 299 EILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTT-AET-L 356 Query: 207 LTTITQFDPLYVNFSYSEQDRLNFENSVKKGL-IEAK-DATNWRTHIRLADGSVYPEAGK 264 + + + D L V +D + G K +A + + L G V K Sbjct: 357 MVIVPEDDTLEVTALVQNKDI----GFINVGQNAIIKVEAFPYTRYGYL-VGKV-----K 406 Query: 265 LNFSDSRVDPQTG--------TIRARAIFDNKDGVLLPGQFVRMTIDLGTR 307 D+ D + G NK+ L G V I G R Sbjct: 407 NINLDAIEDQRLGLVFNVIISIEENCLSTGNKNIPLSSGMAVTAEIKTGMR 457
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 31.5 bits (71), Expect = 0.004 Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 4/78 (5%) Query: 64 GVAIMSKQKPVKVEKGFPTDDEEAQR--RMIMAT--FEREDGSLIKVMNGYFPQGESQDH 119 VA++ K + K P ++ ++ + F + G + V+N F ++ Sbjct: 385 SVAVVVNYKTLADGKPLPLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPFSAVDNTGG 444 Query: 120 ETKFPAKQKFYEDLQRYL 137 E F +Q F + L Sbjct: 445 ELPFWQQQSFIDQLLAAG 462
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 63.3 bits (154), Expect = 1e-12 Identities = 27/136 (19%), Positives = 56/136 (41%), Gaps = 5/136 (3%) Query: 84 RILLVNEQRSFQVMMKAMLINIGISRITYANSAEEARRRCQKETFDIYLLDYELGVGENG 143 IL+ ++ + + ++ L G + ++A R D+ + D + EN Sbjct: 5 TILVADDDAAIRTVLNQALSRAGY-DVRITSNAATLWRWIAAGDGDLVVTDVVMP-DENA 62 Query: 144 RQLLESLRDQKLIPPQSVVIMVSGDSSRAMVLSALEAEPDEYLMKPFSQEQFSFRLKRAL 203 LL ++ + P V+++S ++ + A E +YL KPF + + RAL Sbjct: 63 FDLLPRIKKAR---PDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119 Query: 204 ARRQALESVFSALAKE 219 A + S +++ Sbjct: 120 AEPKRRPSKLEDDSQD 135
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 57.5 bits (139), Expect = 3e-11 Identities = 82/402 (20%), Positives = 144/402 (35%), Gaps = 33/402 (8%) Query: 12 IVILGTFMVRTSFFMVWPFLSILLYREYDLS---ASGIGMLLGGAAVLSCLIGFYVGWLS 68 +++ + ++ P L LL R+ S + G+LL A++ +G LS Sbjct: 9 VILSTVALDAVGIGLIMPVLPGLL-RDLVHSNDVTAHYGILLALYALMQFACAPVLGALS 67 Query: 69 DRLGRRTILLLGCALSCGAYLLLGFGHSLWLIALGVFGSGLSYAFIDTPGKALMGDLLPE 128 DR GRR +LL+ A + Y ++ LW++ +G +G++ A G A + D+ Sbjct: 68 DRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAG-AYIADITDG 126 Query: 129 KAQRELAQHLRYFLLNVGAG--VGPLIGVMVGLGARQETFVVTAASYGLLGIAFLLGF-- 184 E A+H + G G GP++G ++G + F AA L G+ FL G Sbjct: 127 D---ERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAA---LNGLNFLTGCFL 180 Query: 185 -----RRECAGRPDVGLTLGAMLRVVGRDRAFMLFILANLLMMLVYAQVESPLIQYLTRA 239 + E L A R + +M LV + + + Sbjct: 181 LPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDR 240 Query: 240 GAPEVETLVALLVATNALTIITLQFPLLHLTRRWRVSLRLQFSILLMASAQVLFALSSPA 299 + T+ L A L + + R + +L M + + L + A Sbjct: 241 FHWDATTIGISLAAFGILHSLAQAMITGPVAARLG---ERRALMLGMIADGTGYILLAFA 297 Query: 300 LLWPWLVAVFLLSVGEAVLFPLFNVLIDEMAPAHLKGSYFGA-SALAGLGWALSPLVGGW 358 + +L + P ++ +G G+ +AL L + PL+ Sbjct: 298 TRGWMAFPIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTA 357 Query: 359 L----LQVWGGPALFAVMTAICVLVFLL-----YGAGNRVAR 391 + + W G A A + + L GAG R R Sbjct: 358 IYAASITTWNGWAWIAGAALYLLCLPALRRGLWSGAGQRADR 399
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 123 bits (309), Expect = 4e-37 Identities = 74/207 (35%), Positives = 111/207 (53%), Gaps = 1/207 (0%) Query: 1 MARRTKEEAQQTRCHIMSTALDLFCSHGLAKTSLTDIARAAELTRGAIYWHFKNKEELFV 60 MAR+TK+EAQ+TR HI+ AL LF G++ TSL +IA+AA +TRGAIYWHFK+K +LF Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60 Query: 61 SLWEELCQPLSHQLDACVSELEPDPLGKLRTFLKEVLVKICTNPAHQQMFTIMFNLESLE 120 +WE + ++ DPL LR L VL T + + I+F+ Sbjct: 61 EIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFV 120 Query: 121 GEAISLREHMRSQSSNFFRDLETTLGNAVRLGQLPQGLDLQRAATLLHCTLDGYIINWLH 180 GE +++ R+ + +E TL + + LP L +RAA ++ + G + NWL Sbjct: 121 GEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLF 180 Query: 181 FPERIDLRQEADFLLDSLFA-LIALPT 206 P+ DL++EA + L + PT Sbjct: 181 APQSFDLKKEARDYVAILLEMYLLCPT 207
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 45.6 bits (108), Expect = 2e-07 Identities = 32/218 (14%), Positives = 74/218 (33%), Gaps = 17/218 (7%) Query: 48 TAPLQLTTELTGRSAPL-RVAEVRPQVSGIILKRLFTEGSDVKAGQLLYQIDPAVYQAAV 106 +++ G+ R E++P + I+ + + EG V+ G +L ++ +A Sbjct: 77 LGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADT 136 Query: 107 ASAKANLAKAQANEQSARLKAKRYAELVKVKAISSQEYDDADAAWKQQ-LAEIGAAKAAL 165 +++L +A+ + ++ R EL K+ + + +++ L K Sbjct: 137 LKTQSSLLQARLEQTRYQI-LSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQF 195 Query: 166 QTANINLAYTRITAPISGRIGKSAVTEGALVTAQQADSLTSIQQLDPMYVDVRQSTADLL 225 T + K A L + ++L+ +++ D Sbjct: 196 STWQNQKYQKELN-----LDKKRAERLTVLARINRYENLSRVEK---------SRLDDFS 241 Query: 226 RLKRQVAAGKLTQDEQKGARVSFQLEDGSTYGEEGSLQ 263 L + A K EQ+ V E + ++ Sbjct: 242 SLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIE 279 Score = 43.7 bits (103), Expect = 1e-06 Identities = 45/241 (18%), Positives = 84/241 (34%), Gaps = 35/241 (14%) Query: 77 ILKRLFTEGSDVKAGQLLYQIDPAVYQAAVASAKANLAKAQANEQSARLKAKRYAELVKV 136 L + + K L + + K+ L + ++ SA+ + + +L K Sbjct: 239 DFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKN 298 Query: 137 KAISSQEYDDADAAWKQQLAEIGAAKAALQTANINLAYTRITAPISGRIGKSAV-TEGAL 195 + + +Q IG L + I AP+S ++ + V TEG + Sbjct: 299 EILDKL---------RQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGV 349 Query: 196 VTAQQADSLTSI-QQLDPMYVDVRQSTADLLRLKRQVAAGKLTQDEQKGARVSFQLEDGS 254 VT A++L I + D + V D+ G + + A + + + Sbjct: 350 VTT--AETLMVIVPEDDTLEVTALVQNKDI---------GFINVGQN--AIIKVEAFPYT 396 Query: 255 TYGE---EGSLQFSDVTVDETTGMVTLRVI--------VPNPHQLLLPGMFMRATLQEGE 303 YG + D D+ G+V +I N + L GM + A ++ G Sbjct: 397 RYGYLVGKVKNINLDAIEDQRLGLVFNVIISIEENCLSTGNKNIPLSSGMAVTAEIKTGM 456 Query: 304 R 304 R Sbjct: 457 R 457 Score = 31.0 bits (70), Expect = 0.010 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 1/49 (2%) Query: 52 QLTTELTGRSAPLRVAEVRPQVSGIILK-RLFTEGSDVKAGQLLYQIDP 99 LT EL + + +R VS + + ++ TEG V + L I P Sbjct: 313 LLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVP 361
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 33.8 bits (77), Expect = 6e-04 Identities = 10/35 (28%), Positives = 18/35 (51%) Query: 202 SLEGSNVNVVDEMTNLIRLQRQFETQVKIMKTAEE 236 S VN+ +E NL R Q+ + ++++TA Sbjct: 503 QQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 537 Score = 29.9 bits (67), Expect = 0.010 Identities = 11/32 (34%), Positives = 18/32 (56%) Query: 4 LLYIAMSGAKESMNSLAVRSNNLANANTTGFK 35 L+ AMSG + +L SNN+++ N G+ Sbjct: 3 LINNAMSGLNAAQAALNTASNNISSYNVAGYT 34
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 41.1 bits (96), Expect = 3e-06 Identities = 14/46 (30%), Positives = 22/46 (47%) Query: 215 IKQGMLETSNVNVTEELVNLIQAQRVYEMNSKVLSAVDGMMSFLIQ 260 + S VN+ EE NL + Q+ Y N++VL + + LI Sbjct: 499 LSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALIN 544 Score = 39.2 bits (91), Expect = 1e-05 Identities = 10/36 (27%), Positives = 21/36 (58%) Query: 5 LWISKTGLDAQQTNISVTSNNLANASTVGYKKSRAI 40 + + +GL+A Q ++ SNN+++ + GY + I Sbjct: 4 INNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTI 39
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 149 bits (377), Expect = 4e-47 Identities = 79/223 (35%), Positives = 114/223 (51%), Gaps = 15/223 (6%) Query: 3 AIWMLGLLALGGCSSTPNTAKPDDPEFAPVYGESEPVSVRPTGAIFQPDQV-----NGIY 57 AI L +L+L GC+ P+T A PV+ G+IFQ Q ++ Sbjct: 10 AISSLLVLSLTGCAWIPSTPLVQGATSAQPVPGPTPVA---NGSIFQSAQPINYGYQPLF 66 Query: 58 SDIKAHKVGDIITIELAESTSASKKANTQSGKDNK----FTMNPAVLGGVPVTAGPYDLS 113 D + +GD +TI L E+ SASK ++ + +D K F P L G+ G Sbjct: 67 EDRRPRNIGDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVPRYLQGL---FGNARAD 123 Query: 114 ASLSQNGAFKGQAKADQSNSLQGNISVSVAKVLPNGNLLVRGEKWIMLNNGNEYIRITGM 173 S F G+ A+ SN+ G ++V+V +VL NGNL V GEK I +N G E+IR +G+ Sbjct: 124 VEASGGNTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGEKQIAINQGTEFIRFSGV 183 Query: 174 IRPEDVTTDNSVSSQKVANARIHYGGTGDLANTQEQGWLTSFF 216 + P ++ N+V S +VA+ARI Y G G + Q GWL FF Sbjct: 184 VNPRTISGSNTVPSTQVADARIEYVGNGYINEAQNMGWLQRFF 226
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 396 bits (1019), Expect = e-140 Identities = 161/368 (43%), Positives = 225/368 (61%), Gaps = 11/368 (2%) Query: 3 SLRLVALFCCLLPLGMAHASRIKDISSVEGVRSNQLIGYGLVVGLPGTGE--KSNAFTEQ 60 +L AL P A SRIKDI+S++ R NQLIGYGLVVGL GTG+ +S+ FTEQ Sbjct: 10 ALVFSALPFLSTPPAQADTSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDSLRSSPFTEQ 69 Query: 61 TFRTMLNNFGIKVPDNIKPKIKDVAPVAIHADLPPFAKPGQTIDVTVSAIGEAKSLRGGT 120 + R ML N GI + K++A V + A+LPPFA PG +DVTVS++G+A SLRGG Sbjct: 70 SMRAMLQNLGITTQGG-QSNAKNIAAVMVTANLPPFASPGSRVDVTVSSLGDATSLRGGN 128 Query: 121 LLQSFLKGLDGRVYAVAQGSLVVGGLGAEGADGSKVVINTPTVGRIANGATVEREVPNSF 180 L+ + L G DG++YAVAQG+L+V G A+G D + + T R+ NGA +ERE+P+ F Sbjct: 129 LIMTSLSGADGQIYAVAQGALIVNGFSAQG-DAATLTQGVTTSARVPNGAIIERELPSKF 187 Query: 181 SQGDTITFNLNRPDFTTARRLADVVNDL----VGPNTAQALDATSVKVYAPRDPGQRVSY 236 + L PDF+TA R+ADVVN G A+ D+ + V PR Sbjct: 188 KDSVNLVLQLRNPDFSTAVRVADVVNAFARARYGDPIAEPRDSQEIAVQKPR-VADLTRL 246 Query: 237 LATIENLEVDPASEAAKIIVNSRTGTIVIGSQVRLKPAAISHGGLTVTIAENQQVSQPNP 296 +A IENL V+ AK+++N RTGTIVIG+ VR+ A+S+G LTV + E+ QV QP P Sbjct: 247 MAEIENLTVET-DTPAKVVINERTGTIVIGADVRISRVAVSYGTLTVQVTESPQVIQPAP 305 Query: 297 LSGGQTAVTNNSTINVQQEQGRMFKLDTGATLDDLVRAVNQVGVAPGDLMAILEALQQAG 356 S GQTAV + I QE ++ ++ G L LV +N +G+ ++AIL+ ++ AG Sbjct: 306 FSRGQTAVQPQTDIMAMQEGSKVAIVE-GPDLRTLVAGLNSIGLKADGIIAILQGIKSAG 364 Query: 357 AIEGQLVI 364 A++ +LV+ Sbjct: 365 ALQAELVL 372
>FLGFLGJ#Flagellar protein FlgJ signature. Length = 313 Score = 198 bits (504), Expect = 2e-63 Identities = 107/331 (32%), Positives = 163/331 (49%), Gaps = 55/331 (16%) Query: 3 DIQNLDRLRQLSQSKEGKADALMAASRQFESIFTQTLFQSMRQANQVLTQDSPFNSSYTQ 62 D Q+L+ L+ ++ E A + +RQ E +F Q + +SMR A +D F+S +T+ Sbjct: 14 DAQSLNELKA--KAGEDPAANIRPVARQVEGMFVQMMLKSMRDAL---PKDGLFSSEHTR 68 Query: 63 FYEGMLDEQRVADMSSKGGIGLAAMVAKQLSPETFTHHDGRVLKMPQRTERVYKPYQPPT 122 Y M D+Q M++ G+GLA M+ KQ++PE + P + P + Sbjct: 69 LYTSMYDQQIAQQMTAGKGLGLAEMMVKQMTPEQPLPEE----STPAA--PMKFPLETVV 122 Query: 123 SAANDLISAS--KVGKDFADKEMSGDVQSLATAHRSRRTIPPMGPAQVGHGIRGAKALDE 180 N +S K D + GD ++ Sbjct: 123 RYQNQALSQLVQKAVPRNYDDSLPGDSKA------------------------------- 151 Query: 181 TTQVFDTPEEFVNRLMPLAKKAADKLGLSPAVLVAQAALESGWGKRVIKNGEGQVTHNLF 240 F+ +L A+ A+ + G+ +++AQAALESGWG+R I+ G+ ++NLF Sbjct: 152 ----------FLAQLSLPAQLASQQSGVPHHLILAQAALESGWGQRQIRRENGEPSYNLF 201 Query: 241 GIKADPRWEGPKTVVSTLEYEKGVASRQKAAFRSYESFEESFNDYVDFLTSGSRYKGALA 300 G+KA W+GP T ++T EYE G A + KA FR Y S+ E+ +DYV LT RY A+ Sbjct: 202 GVKASGNWKGPVTEITTTEYENGEAKKVKAKFRVYSSYLEALSDYVGLLTRNPRY-AAVT 260 Query: 301 KVDSPDRYFEALQQAGYATDPHYARKLKQVL 331 S ++ +ALQ AGYATDPHYARKL ++ Sbjct: 261 TAASAEQGAQALQDAGYATDPHYARKLTNMI 291
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 179 bits (455), Expect = 5e-51 Identities = 128/464 (27%), Positives = 219/464 (47%), Gaps = 25/464 (5%) Query: 3 SDLLGIGTSGVMAQQRLLQTTSNNIVNVNSQGYVRERTLIYTNANGLGTGDML------- 55 S L+ SG+ A Q L T SNNI + N GY R+ T++ + LG G + Sbjct: 1 SSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVS 60 Query: 56 -TERVINAYAQGEVRRDTSAFYASSTRYQQLANTDSLLGDTSNSVGAAISSYFEGFHTAN 114 +R +A+ ++R + + RY+Q++ D++L +++S+ + +F T Sbjct: 61 GVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLSTSTSSLATQMQDFFTSLQTLV 120 Query: 115 EAPADISGRKTTLSQLSGMVNRFHTLSAQLDKQTDTINTTIGDEAKRVNSLINSINDLNQ 174 D + R+ + + G+VN+F T L Q +N IG ++N+ I LN Sbjct: 121 SNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASLND 180 Query: 175 AIIRTQGT----PEENLMLFDQRDEAIRQLSEKMEIRTVPQDNGSMLVNMSTGHSLVLNG 230 I R G NL+ DQRD+ + +L++ + + QD G+ + M+ G+SLV Sbjct: 181 QISRLTGVGAGASPNNLL--DQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQGS 238 Query: 231 SVAQLSVVPGNPDAREPELQ-LNMDPNKITLNNKDIGGG-LGGLFSARN-DLEPSKRELG 287 + QL+ VP + D + ++ I + K + G LGG+ + R+ DL+ ++ LG Sbjct: 239 TARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTLG 298 Query: 288 QLAAAMADAMNQQNRLGMDLDNELGGDLFSLGSSDGLAYSQNTGSGAAKVSFVPGKGTEV 347 QLA A A+A N Q++ G D + + G D F++G + + A + V + Sbjct: 299 QLALAFAEAFNTQHKAGFDANGDAGEDFFAIGKP-AVLQNTKNKGDVAIGATVTDASAVL 357 Query: 348 TTFDYEVQFSSATGYEVFSVDKDGNRTSLTTGTTPPATVQVAGHGIQIDLSGTPAAGDKI 407 T DY++ F + + V + + T+ T TP A +VA G+++ +GTPA D Sbjct: 358 AT-DYKISFDNNQ----WQVTRLASNTTFT--VTPDANGKVAFDGLELTFTGTPAVNDSF 410 Query: 408 LLQPTKRAAAGLGQLATRAEDLALASPLKADKNKNNFGSAEIKL 451 L+P A + L T +A+AS A + N G A + L Sbjct: 411 TLKPVSDAIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDL 454 Score = 75.0 bits (184), Expect = 3e-16 Identities = 48/117 (41%), Positives = 68/117 (58%), Gaps = 8/117 (6%) Query: 547 SYNTDGFADNANGLALADLQNKDLVRKSSNAGTSNDKMTFNEAYSSLVTGVGNTASQAKS 606 S G +DN NG AL DLQ SN+ T +FN+AY+SLV+ +GN + K+ Sbjct: 436 SEEDAGDSDNRNGQALLDLQ--------SNSKTVGGAKSFNDAYASLVSDIGNKTATLKT 487 Query: 607 QLKADETKLTQSRGIFESVSGVSLEEEAANLIRYQQSYAASAQIVSTAKTIFDTLLS 663 +TQ +S+SGV+L+EE NL R+QQ Y A+AQ++ TA IFD L++ Sbjct: 488 SSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALIN 544
>PF05272#Virulence-associated E family protein Length = 892 Score = 31.2 bits (70), Expect = 0.005 Identities = 12/30 (40%), Positives = 17/30 (56%) Query: 37 VVVIVGPSGSGKSTFLRTLNQLETINDGNI 66 VV+ G G GKST + TL L+ +D + Sbjct: 598 SVVLEGTGGIGKSTLINTLVGLDFFSDTHF 627
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 52.5 bits (126), Expect = 1e-09 Identities = 22/133 (16%), Positives = 46/133 (34%), Gaps = 14/133 (10%) Query: 66 IVPLVKGRVIEVPVQANQPVKKGDVLFRLDAAPFQLRADSLTARVESNRNHLKSIEARLR 125 I P+ V E+ V+ + V+KGDVL +L A + + + R + R Sbjct: 99 IKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSR 158 Query: 126 SAKLDRDRASDL--------------MRRGVGKQRDLDVTQANVDDIVAQIEQQQATLED 171 S +L++ L +R + Q +++++A Sbjct: 159 SIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLT 218 Query: 172 LQAQLDEARYQVE 184 + A+++ Sbjct: 219 VLARINRYENLSR 231 Score = 47.9 bits (114), Expect = 3e-08 Identities = 31/180 (17%), Positives = 68/180 (37%), Gaps = 21/180 (11%) Query: 100 QLRADSLTARVESNRNHLKSIEARLRSAKLDRDRASDLMRRGVGKQRDLDVTQANVDDIV 159 + + + ++ L+ IE+ + SAK + + L + +I+ Sbjct: 258 ENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKN----------------EIL 301 Query: 160 AQIEQQQATLEDLQAQLDEARYQVEQTVVYAPSDGHVVQLALR-PGMIATPFMYRPVMTF 218 ++ Q + L +L + + + +V+ AP V QL + G + T +M Sbjct: 302 DKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAE--TLMVI 359 Query: 219 IHKDETAYVGWFWQNSM-QRLAVGDEAEVVIDGIPGKIFQGQVTAVIPAIAAGNVQANAG 277 + +D+T V QN + VG A + ++ P + G + + I ++ Sbjct: 360 VPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRY-GYLVGKVKNINLDAIEDQRL 418
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 62.5 bits (152), Expect = 1e-13 Identities = 31/132 (23%), Positives = 54/132 (40%), Gaps = 7/132 (5%) Query: 2 IRTLIVDDELYAREELMQHLAAEPDIELLGAAANAIEALPLIQRLKPDVVFLDIQMPKLS 61 L+ DD+ R L Q L+ + +NA I D+V D+ MP + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAG--YDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 62 GMALVAML---DPLPRIVFVTAFD--EYAIQAFEENAFDYLLKPVEPARLAKTLARLRQD 116 L+ + P ++ ++A + AI+A E+ A+DYL KP + L + R + Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 117 LSPQPMTALAPA 128 +P + Sbjct: 122 PKRRPSKLEDDS 133
>PF06580#Sensor histidine kinase Length = 349 Score = 221 bits (564), Expect = 2e-69 Identities = 63/200 (31%), Positives = 107/200 (53%), Gaps = 3/200 (1%) Query: 355 RLEQQQRLLVQSELKLVQAQINPHFLFNTLNTISAITRREPERARQLLLHLSLFFRKNLK 414 + + +++L ++AQINPHF+FN LN I A+ +P +AR++L LS R +L+ Sbjct: 150 DQWKMASMAQEAQLMALKAQINPHFMFNALNNIRALILEDPTKAREMLTSLSELMRYSLR 209 Query: 415 RQSG-LATLQEEQEHCQSYLEIELARFGDRLTVQNEIPPALADLKLPSFTLQPLIENAIK 473 + +L +E SYL++ +F DRL +N+I PA+ D+++P +Q L+EN IK Sbjct: 210 YSNARQVSLADELTVVDSYLQLASIQFEDRLQFENQINPAIMDVQVPPMLVQTLVENGIK 269 Query: 474 HGISTLLEQGHIRLYTEQTAERVTIHVEDN-AGTWQEKPTGDGLGMTLVDRRLKIAFGNR 532 HGI+ L + G I L + VT+ VE+ + + G G+ V RL++ +G Sbjct: 270 HGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKESTGTGLQNVRERLQMLYGTE 329 Query: 533 YGLSVSCEPDCWTRVSVTLP 552 + +S + V +P Sbjct: 330 AQIKLSEKQGK-VNAMVLIP 348
>PHAGEIV#Gene IV protein signature. Length = 426 Score = 29.9 bits (67), Expect = 0.020 Identities = 20/121 (16%), Positives = 44/121 (36%), Gaps = 14/121 (11%) Query: 282 DYYDELLHPRNSATPAAPSQAISQLYKLSQKKFDQ--DLVKLLIKVLGVYPPGSLVMLSD 339 + + + + ++Q +K++ + +V+L +K S V+ D Sbjct: 110 NQEYDDNSAPSGGFFVPQNDNVTQTFKINNVRAKDLIRVVELFVK--SNTSKSSNVLSVD 167 Query: 340 DSVALVLSTEPTMPLKPKVLPYIKAQRPEGVAMIDLREDERTIKSFIKQEELDEGQRLFF 399 S LV+S I P+ ++ +DL D+ I+ I + + + F Sbjct: 168 GSNLLVVSAPKD----------ILDNLPQFLSTVDLPTDQILIEGLIFEVQQGDALDFSF 217 Query: 400 N 400 Sbjct: 218 A 218
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 30.2 bits (68), Expect = 0.011 Identities = 12/28 (42%), Positives = 14/28 (50%) Query: 52 VVGESGCGKSTFARALIGLVPATDGKVV 79 + GESG GK ARAL +G V Sbjct: 165 ITGESGTGKELVARALHDYGKRRNGPFV 192
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 209 bits (534), Expect = 2e-66 Identities = 84/341 (24%), Positives = 157/341 (46%), Gaps = 28/341 (8%) Query: 42 AWLEVDLGAFEHNIQTLKDRLGDKGPKICAIMKADAYGHGIDLLVPSVVKAGIPCIGIAS 101 +DL A + N+ ++ ++ +++KA+AYGHGI + S + A + + Sbjct: 5 IQASLDLQALKQNLSIVRQAATHA--RVWSVVKANAYGHGI-ERIWSAIGA-TDGFALLN 60 Query: 102 NEEARVAREKGFTGRLMRVRAAT-PAEVEQALPYKMEELIGSLVSAQGIADIAQRHHTNI 160 EEA RE+G+ G ++ + ++E +++ + S + + + + + Sbjct: 61 LEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNARLK--APL 118 Query: 161 PVHIALNSAGMSRNGIDLRLADSKEDALAMLKLKGITPVGIMTHFP-VEEKEDVKMGLAQ 219 +++ +NS GM+R G + + + + + +M+HF E + + +A+ Sbjct: 119 DIYLKVNS-GMNRLGF--QPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISGAMAR 175 Query: 220 FKLDSQWLLEAGKLDRSKITIHAANSFATLEVPDAYFDMVRPGGLLYGDSIPS------- 272 + ++ L + +NS ATL P+A+FD VRPG +LYG S PS Sbjct: 176 IEQAAEGL---------ECRRSLSNSAATLWHPEAHFDWVRPGIILYGAS-PSGQWRDIA 225 Query: 273 YTEYKRVMAFKTQVASVNHYPAGNTVGYDRTFTLKRDSWLANLPLGYSDGYRRALSNKAY 332 T + VM +++ V AG VGY +T + + + + GY+DGY R Sbjct: 226 NTGLRPVMTLSSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHAPTGTP 285 Query: 333 VLIQGQKVPVVGKTSMNTIMVDVTDLKGVKPGDEVVLFGRQ 373 VL+ G + VG SM+ + VD+T G V L+G++ Sbjct: 286 VLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKE 326
>VACJLIPOPROT#VacJ lipoprotein signature. Length = 251 Score = 27.2 bits (60), Expect = 0.041 Identities = 9/18 (50%), Positives = 11/18 (61%) Query: 35 RLLWLGLCALLLLGCATP 52 RL L L LL+GCA+ Sbjct: 4 RLSALALGTTLLVGCASS 21
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 41.6 bits (98), Expect = 5e-06 Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 12/93 (12%) Query: 4 LLIKNATLVNEGRIYASDVLIEGERIARIA----PDIQAPDAVVIDA-----AGRHLI-- 52 +I NA +++ I +D+ ++ RIA I PD+Q +++ AG I Sbjct: 70 TVITNALILDHWGIVKADIGLKDGRIAAIGKAGNPDMQPGVTIIVGPGTEVIAGEGKIVT 129 Query: 53 PGMIDDQVHFREPGLTHKGTIASESRAAVAGGT 85 G +D +HF P + + S + GGT Sbjct: 130 AGGMDSHIHFICPQQIEEA-LMSGLTCMLGGGT 161
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 31.5 bits (71), Expect = 0.011 Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 16/81 (19%) Query: 327 LGAIESLLCAV----VL---DGMTGRKHSSNAELVGQGLGNI---VAPFF------GGIT 370 L + +L A+ +L D T K ++ EL + LGN+ ++ + G++ Sbjct: 242 LDTVSGILSAISASFILSNADADTRTKAAAGVELTTKVLGNVGKGISQYIIAQRAAQGLS 301 Query: 371 ATAAIARSATNVRAGATSPIS 391 +AA A + A SP+S Sbjct: 302 TSAAAAGLIASAVTLAISPLS 322
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 426 bits (1098), Expect = e-152 Identities = 143/354 (40%), Positives = 219/354 (61%), Gaps = 4/354 (1%) Query: 4 VTASIDIDALQHNFAVVRRHAPHSKIIAVLKANAYGHGLLPVAHALAQADAYAVARVEEA 63 + AS+D+ AL+ N ++VR+ A H+++ +V+KANAYGHG+ + A+ D +A+ +EEA Sbjct: 5 IQASLDLQALKQNLSIVRQAATHARVWSVVKANAYGHGIERIWSAIGATDGFALLNLEEA 64 Query: 64 LVLRANAITKPILVLGGFFSAEALPLLAKHELQTTLHTWEQLALLEQASLPAPIKVWLKL 123 + LR PIL+L GFF A+ L + +H L T +H+ QL L+ A L AP+ ++LK+ Sbjct: 65 ITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNARLKAPLDIYLKV 124 Query: 124 DTGMNRLGLRAEELPAFIERLSHCRNVVQPFHLMTHFSQSDEQDTQATRLQIEEFNRLSA 183 ++GMNRLG + + + ++L NV + LM+HF++++ D + + + + Sbjct: 125 NSGMNRLGFQPDRVLTVWQQLRAMANVGE-MTLMSHFAEAEHPDGISG--AMARIEQAAE 181 Query: 184 HLPGERAMANSAGILAWPASRSDWIRPGLMLYGASPFAG-QLAADHDLRPVMTLKSQLIA 242 L R+++NSA L P + DW+RPG++LYGASP + A+ LRPVMTL S++I Sbjct: 182 GLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTLSSEIIG 241 Query: 243 TRACAQGEAVGYGGHWVADRNTTLGVVAAGYGDGYPRMAPEGTPMLINGRQVPIVGRVSM 302 + GE VGYGG + A +G+VAAGY DGYPR AP GTP+L++G + VG VSM Sbjct: 242 VQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHAPTGTPVLVDGVRTMTVGTVSM 301 Query: 303 DMITVDLGPAARDKVGDEVTLWGEGLPVEQVAEKIGTIPYELLTRLTSRVHLTY 356 DM+ VDL P + +G V LWG+ + ++ VA GT+ YEL+ L RV + Sbjct: 302 DMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELMCALALRVPVVT 355
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 56.8 bits (137), Expect = 7e-11 Identities = 24/125 (19%), Positives = 47/125 (37%), Gaps = 8/125 (6%) Query: 7 QGRSAMVVDDSRTQQYEVTCLLQELGFGQIHVAHDGQDALNKLQQLERIDLLLTDLNMPG 66 G + +V DD + + L G+ + + + + DL++TD+ MP Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGY-DVRITSNAATLWRWIAA-GDGDLVVTDVVMPD 59 Query: 67 MDGVELISNLEKNTHYRMFVAVMSGVERDVLDVIHAIADASTLEVIGVLSKPLRQSDLRN 126 + +L+ ++K + V VMS + AS L KP ++L Sbjct: 60 ENAFDLLPRIKK-ARPDLPVLVMSA-----QNTFMTAIKASEKGAYDYLPKPFDLTELIG 113 Query: 127 MLQHC 131 ++ Sbjct: 114 IIGRA 118
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 74.5 bits (183), Expect = 9e-17 Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 7/107 (6%) Query: 3 IRVLIVDDSALVREVLTQMLSKA-EDIEVIGAAFDPIFAMQQMKKCWPDVIILDIEMPRM 61 +L+ DD A +R VL Q LS+A D+ + A + + D+++ D+ MP Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAAT---LWRWIAAGDGDLVVTDVVMPDE 60 Query: 62 DGLTFLKKIMAEHP-TPVIICSSLTEEGAMITLEAMSAGAISIVTKP 107 + L +I P PV++ S+ I +A GA + KP Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAI--KASEKGAYDYLPKP 105
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 29.3 bits (65), Expect = 0.042 Identities = 26/151 (17%), Positives = 54/151 (35%), Gaps = 18/151 (11%) Query: 266 HRLSDTLNEVGAMSEAIGSASEQVAATANALSQTSSELASSVEQTSASVEE-------MT 318 + +V A I + + A+SQ S+ + + + + E + Sbjct: 282 KIREEKQKQVTASETRINRINADITQIQKAISQVSNNRNAGIARVHEAEENLKKAQNNLL 341 Query: 319 ATVSQNADNA------KVTENISTRAASSATD-----SGKAVGEMVHAMKEIASRITVIN 367 + ++A +A +TE + + A + GK +G + A+ V+N Sbjct: 342 NSQIKDAVDATVSFYQTLTEKYGEKYSKMAQELADKSKGKKIGNVNEALAAFEKYKDVLN 401 Query: 368 DIANKTDLLAINAAIEAARAGEHGKGFATVA 398 +K D AI A+ + + + K A Sbjct: 402 KKFSKADRDAIFNALASVKYDDWAKHLDQFA 432
>PF06580#Sensor histidine kinase Length = 349 Score = 42.5 bits (100), Expect = 4e-06 Identities = 19/89 (21%), Positives = 31/89 (34%), Gaps = 11/89 (12%) Query: 407 GKEIQLQIRNADTDIDKSMVEKLTDPLMHLVRNAADHGLEEQQARLAAGKPAQGTITLNA 466 +Q + + I V + + LV N HG+ + P G I L Sbjct: 237 EDRLQFEN-QINPAIMDVQVPPML--VQTLVENGIKHGIAQ--------LPQGGKILLKG 285 Query: 467 YHDAGAVVVEVSDDGRGIDRDKILAKAHG 495 D G V +EV + G ++ + G Sbjct: 286 TKDNGTVTLEVENTGSLALKNTKESTGTG 314
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 89.9 bits (223), Expect = 2e-24 Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 3/117 (2%) Query: 1 MSK-TILVVDDSVGIRAAITMTLTSAGFEVIEAGDGEAALIELDQRRVHLIISDLNMPGM 59 M+ TILV DD IR + L+ AG++V + + L+++D+ MP Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 60 DGMTLLRRVKAQQTTRYLPFIMLTTEDSEQIKREGFEAGARVWLTKPFDPLKLLDDV 116 + LL R+K + LP ++++ +++ + E GA +L KPFD +L+ + Sbjct: 61 NAFDLLPRIKKARP--DLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGII 115
>PF06580#Sensor histidine kinase Length = 349 Score = 34.8 bits (80), Expect = 6e-04 Identities = 39/230 (16%), Positives = 72/230 (31%), Gaps = 41/230 (17%) Query: 310 RKDELAELSAQLSQVQAYSDLLRVQTHEH--HNQLGTIAGLIELGATR-----EALAFIG 362 ++ E+ + +A L+ Q + H N L I LI T+ +L+ + Sbjct: 145 KQAEIDQWKMASMAQEAQLMALKAQINPHFMFNALNNIRALILEDPTKAREMLTSLSELM 204 Query: 363 REA-ATEQSLLSFLMSAIAKPKVAGLLLGKYHRAHELGLVLEVDPDSRLYDIPLRVSGSQ 421 R + + L + + L L L +++P +P Sbjct: 205 RYSLRYSNARQVSLADELTVVD-SYLQLASIQFEDRLQFENQINPAIMDVQVP------- 256 Query: 422 LVTVLGNLIDNAFEATRRHGAPYQP----VRVALSDLGQDLILEVEDGAGGIDPALADRL 477 ++ L++N +HG P + + + + LEVE+ Sbjct: 257 -PMLVQTLVENGI----KHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALK------ 305 Query: 478 FERGVSSKAEPDHGIGLALVRKTLDALQG---TITIEATTQGSCVVCYIP 524 + G GL VR+ L L G I + + IP Sbjct: 306 -------NTKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 76.4 bits (188), Expect = 2e-18 Identities = 36/148 (24%), Positives = 64/148 (43%), Gaps = 4/148 (2%) Query: 2 IKILIVEDDPAIAEIHRRFVQRLAGFEVLGVALTLFDAREQIEILKPDLVLLDVWLPDGE 61 IL+ +DD AI + + + R AG++V + I DLV+ DV +PD Sbjct: 4 ATILVADDDAAIRTVLNQALSR-AGYDVRITS-NAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 62 GFALLRELRQAGASLDVILLTAAREAGALQEAMRLGVVDFILKPVVFERLRDTLDKYCQN 121 F LL +++A L V++++A +A G D++ KP L + + Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 122 RAALAALADIDQQAVDALLGT--PLQQV 147 + + D Q L+G +Q++ Sbjct: 122 PKRRPSKLEDDSQDGMPLVGRSAAMQEI 149
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 30.3 bits (68), Expect = 0.039 Identities = 21/112 (18%), Positives = 31/112 (27%), Gaps = 17/112 (15%) Query: 198 RVADLDRLTLEDVRQFFLRWYGPNNATLVIGGDIQPAQTLAWVERYFAALPPSPTQTSPV 257 V D L E QFFL ++ + L V +T+ V Sbjct: 65 TVRSYDMLNEEQYYQFFLSVLDVYGFAVINMNN----GVLKVV-------RSKDAKTAAV 113 Query: 258 VRPVTLKKSRYRTLVDRVSEPMLVLAYPTVSAREPDFEALDLLADQLGGSAS 309 +V R V+ V+AR+ L + GS Sbjct: 114 PVASDAAPGIGDEVVTR------VVPLTNVAARDLAPLLRQLNDNAGVGSVV 159
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 26.7 bits (59), Expect = 0.017 Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 25/94 (26%) Query: 31 PTLLTLIAMGVSVLLLAMAVKQ-----------LPLGT-----------AYAVWTGIGAV 68 P +LT++A+ V +LL++ V + LPL T + W + + Sbjct: 176 PCVLTVVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLALL 235 Query: 69 GTVLMGIWLFNEPA---TLARVLCLLLIIGGILG 99 + + + + R L L +IG I Sbjct: 236 AGFMAFRVMLRQEKRRVSFHRRLLHLPLIGRIAR 269
>PF05272#Virulence-associated E family protein Length = 892 Score = 32.0 bits (72), Expect = 0.006 Identities = 17/52 (32%), Positives = 27/52 (51%) Query: 177 FPSARLTLAHLVEKGALSDAMARFLGLAARSRFNVLISGGTGSGKTTLLNAL 228 + RL LV K L +AR + + ++V++ G G GK+TL+N L Sbjct: 565 YKPRRLRYLQLVGKYILMGHVARVMEPGCKFDYSVVLEGTGGIGKSTLINTL 616
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 32.1 bits (73), Expect = 0.004 Identities = 30/154 (19%), Positives = 47/154 (30%), Gaps = 10/154 (6%) Query: 24 VLARLTEVETRQVR--GSLAEARAHCLTQGAPDILLVEVENPQTLAADLAALAECCPPQM 81 VL + VR + A + G D+++ +V P A DL + P + Sbjct: 18 VLNQALSRAGYDVRITSNAATLWRW-IAAGDGDLVVTDVVMPDENAFDLLPRIKKARPDL 76 Query: 82 RLVLLGERGDVTLFRWLISVGVDDYYPAPLDPDALRTGLLRLLGVPLATSLRKGRVICVV 141 ++++ + G DY P P D L + R L Sbjct: 77 PVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA--EPKRRPSKLEDDSQ 134 Query: 142 GAAGGVGTSTVAANLAMALADLHHRQVALLDLNL 175 VG S AM ++ DL L Sbjct: 135 DGMPLVGRSA-----AMQEIYRVLARLMQTDLTL 163
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 115 bits (290), Expect = 1e-29 Identities = 55/265 (20%), Positives = 104/265 (39%), Gaps = 28/265 (10%) Query: 176 QYAHVINQLRLAGSDQINISVRIVEMQRTTSEQLGLRWS-AMGEYLQLGVSPGNRFPKPA 234 VI QL + Q+ + I E+Q LG++W+ Q S A Sbjct: 332 DLERVIAQLDIR-RPQVLVEAIIAEVQDADGLNLGIQWANKNAGMTQFTNSGLPISTAIA 390 Query: 235 ERGSWGGKKDVV--------------------YINAIIDALVENSLVNVLAEPNLTAKSG 274 + V ++ AL ++ ++LA P++ Sbjct: 391 GANQYNKDGTVSSSLASALSSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDN 450 Query: 275 EAATFMSGGEFPFPVG----NGDNGPE-IEFKKFGISLELTPTLLDNNRISLTVSPEVST 329 ATF G E P G +GDN +E K GI L++ P + + + + L + EVS+ Sbjct: 451 MEATFNVGQEVPVLTGSQTTSGDNIFNTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSS 510 Query: 330 LSRENSVSIAGVVVPGIETRRTTTTIELADGQSFALAGLVRTHRNQSSEALPFLGEIPGL 389 ++ + S + + TR + + G++ + GL+ + +++ +P LG+IP + Sbjct: 511 VAD-AASSTSSDLGATFNTRTVNNAVLVGSGETVVVGGLLDKSVSDTADKVPLLGDIPVI 569 Query: 390 APFFGSNGFKNQESELVIIATARLV 414 F S K + L++ ++ Sbjct: 570 GALFRSTSKKVSKRNLMLFIRPTVI 594
>cloacin#Cloacin signature. Length = 551 Score = 40.1 bits (93), Expect = 4e-05 Identities = 30/93 (32%), Positives = 41/93 (44%), Gaps = 8/93 (8%) Query: 25 GTPGQEGNNGNNNANGN-NGGSQTTQPTTTDPATSTPDKDTGTNHNNTNSGSGSGNAGNT 83 G G+ N G ++ +GN NGG PT D ++ NN G GSG+ + Sbjct: 3 GGDGRGHNTGAHSTSGNINGG-----PTGLGVGGGASDGSGWSSENNPW-GGGSGSGIHW 56 Query: 84 GNTGNTGNTGNTGNTGN-TGNTGNTGTVTPPTS 115 G GN G GN+G +G GN V P + Sbjct: 57 GGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVA 89
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 114 bits (286), Expect = 8e-36 Identities = 57/126 (45%), Positives = 83/126 (65%), Gaps = 1/126 (0%) Query: 5 DEEDLMADAWAAALEEQVTAEAKPAPLEELKDDAPISAE-ERRKLDTILDIPVTIAMEVG 63 + + D WA AL EQ K A + + +D I+DIPV + +E+G Sbjct: 10 ENTGALDDLWADALNEQKATTTKSAADAVFQQLGGGDVSGAMQDIDLIMDIPVKLTVELG 69 Query: 64 RSQISIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQI 123 R++++I+ LL+L QGSVV LD +AGEPLD+L+NG LIA GEVVVV DK+G+R+TD+I+ Sbjct: 70 RTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPS 129 Query: 124 ERIKKL 129 ER+++L Sbjct: 130 ERMRRL 135
>FLGMOTORFLIM#Flagellar motor switch protein FliM signature. Length = 344 Score = 254 bits (649), Expect = 2e-84 Identities = 80/326 (24%), Positives = 168/326 (51%), Gaps = 10/326 (3%) Query: 1 MSDLLSQDEIDALLHGVDDVE---EEEIGAAGDPGVAQFDFSSQDRIVRGRMPTLELVNE 57 M+++LSQDEID LL + + E+ + + +DF D+ + +M TL L++E Sbjct: 1 MTEVLSQDEIDQLLTAISSGDASIEDARPISDTRKITLYDFRRPDKFSKEQMRTLSLMHE 60 Query: 58 RFARHMRISLFNMMRRTAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFRPLKGTALITME 117 FAR SL +R V + V L + E++ ++ P++L ++ PLKG A++ ++ Sbjct: 61 TFARLTTTSLSAQLRSMVHVHVASVDQLTYEEFIRSIPTPSTLAVITMDPLKGNAVLEVD 120 Query: 118 ARLVFILVENFFGGDGRYHAKIEGREFTPTERRIIQMLLKLVFEDYKDAWAPVMDVGFEY 177 + F +++ FGG G+ R+ T E +++ ++ + + +++W V+D+ Sbjct: 121 PSITFSIIDRLFGGTGQAAKVQ--RDLTDIENSVMEGVIVRILANVRESWTQVIDLRPRL 178 Query: 178 LDSEVNPAMANIVSPTEVIVVSSFHIELDGGGGDFHVAMPYSMLEPIRELLDAG--VQSD 235 E NP A IV P+E++V+ + ++ G + +PY +EPI L + S Sbjct: 179 GQIETNPQFAQIVPPSEMVVLVTLETKVGEEEGMMNFCIPYITIEPIISKLSSQFWFSSV 238 Query: 236 KGDTDVRWSKALRDEIMDVKVELRAKLLETELTLRELMELQPGDIIPVE---MPENLLVF 292 + + ++ LRD++ V +++ A++ L++R+++ L+ GDII + + + ++ Sbjct: 239 RRSSTTQYMGVLRDKLSTVDMDVVAEVGSLRLSVRDILGLRVGDIIRLHDTHVGDPFVLS 298 Query: 293 VEDLPTFHAKMGRTKDNVALKITDKL 318 + + F + G +A +I +++ Sbjct: 299 IGNRKKFLCQPGVVGKKIAAQILERI 324
>FLGHOOKFLIK#Flagellar hook-length control protein signature. Length = 375 Score = 47.1 bits (111), Expect = 1e-07 Identities = 56/233 (24%), Positives = 89/233 (38%), Gaps = 12/233 (5%) Query: 402 TERSEAPRARSEVKVDVKQKVAELARGSAQESSETTTTP----EGSRSQQVQQNSQPQAV 457 T+ + + K +L ++ T P + + S P V Sbjct: 148 TDAPSTVLPTEKPTLFTKLTSEQLTTAQPDDAPGTPAQPLTPLVAEAQSKAEVISTPSPV 207 Query: 458 GHDNRPAATEAAARREP---ANLPHLKLADPEAPAQLHQKVNLMLADKLQQAEIQLDPLG 514 P T + P A + L E L Q ++L Q AE++L P Sbjct: 208 TAAASPLITPHQTQPLPTVAAPVLSAPLGSHEWQQSLSQHISLFTRQGQQSAELRLHPQD 267 Query: 515 LGKMKIQIQMGADSQANVHFVVQHGQTREMLEQAMPRLRDMLAGQGIQLGQTLVQQQPQQ 574 LG+++I +++ D+QA + V H R LE A+P LR LA GIQLGQ+ + + Sbjct: 268 LGEVQISLKVD-DNQAQIQMVSPHQHVRAALEAALPVLRTQLAESGIQLGQSNISGESFS 326 Query: 575 QSQGQSAFAGQGQQGQKGSGSFAETGQTEAEVTGAGMRLSTESTNDSGIDFYA 627 Q ++ Q Q+ E T + L T +SG+D +A Sbjct: 327 GQQQAASQQQQSQRTANHEPLAGEDDDTLP----VPVSLQGRVTGNSGVDIFA 375
>FLGFLIJ#Flagellar FliJ protein signature. Length = 147 Score = 32.5 bits (73), Expect = 3e-04 Identities = 32/120 (26%), Positives = 54/120 (45%) Query: 17 QQAALALAKAQQDLKIFMEQQDALNQYRQIYHQQWTDRGLQGIGAQQNSQYHAFINKLEQ 76 + AA L + ++ + EQ L Y+ Y GI + + Y FI LE+ Sbjct: 19 EDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRNNLNSDMSAGITSNRWINYQQFIQTLEK 78 Query: 77 AATQQYEGVLQVRQALELRREEWLAAQQRRKAVELLLAKQAGREQQKAQRQEQKMLDEYA 136 A TQ + + Q Q +++ W +QR +A + L +Q+ R +QK +DE+A Sbjct: 79 AITQHRQQLNQWTQKVDIALNSWREKKQRLQAWQTLQERQSTAALLAENRLDQKKMDEFA 138
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 86.0 bits (212), Expect = 2e-22 Identities = 60/200 (30%), Positives = 99/200 (49%), Gaps = 2/200 (1%) Query: 56 PVEEPAPSITAEELEAIRQAAWEEGMAEGRDAGYAKGLEEGKLEGLQQGHAAGLEQGKEE 115 P+ EP +I E ++ Q + M + + GY G+ EG+ +G +QG+ GL QG E+ Sbjct: 24 PIVEPEETIIEEAEPSLEQQLAQLQM-QAHEQGYQAGIAEGRQQGHKQGYQEGLAQGLEQ 82 Query: 116 GLALGRELVEQQMSHWQGLIDRLANPLKELDGAVEQQLIALVMQLARALIRHEAETSPRL 175 GLA + + Q L+ L LD + +L+ + ++ AR +I Sbjct: 83 GLAEAKSQQAPIHARMQQLVSEFQTTLDALDSVIASRLMQMALEAARQVIGQTPTVDNSA 142 Query: 176 LLEALKQGLALLPAAELGVTLMLHPDDLARVEQAFGAEECAKRHWRLQSDPTLSPGDLQL 235 L++ ++Q L P L +HPDDL RV+ GA + WRL+ DPTL PG ++ Sbjct: 143 LIKQIQQLLQQEPLFSGKPQLRVHPDDLQRVDDMLGA-TLSLHGWRLRGDPTLHPGGCKV 201 Query: 236 ATELSSIDLTLAGRIDQLLR 255 + + +D ++A R +L R Sbjct: 202 SADEGDLDASVATRWQELCR 221
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 290 bits (743), Expect = 9e-99 Identities = 112/339 (33%), Positives = 208/339 (61%), Gaps = 2/339 (0%) Query: 17 SQRQILDQ--MSGMEMAAVLMLSLNEEDAAQIFRHLEPKQVQRLGMSMASMSDFSHDRVA 74 +++ILD ++G + AA+L++S+ E ++++F++L ++++ L +A + + + Sbjct: 5 KEKEILDVSALTGKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKD 64 Query: 75 AVHRQFIDDIQKYTNIGIGSEDFVRKALVAALGEDKASNLVDQIILGSGARGLDSLKWMD 134 V +F + + I G D+ R+ L +LG KA ++++ + +R + ++ D Sbjct: 65 NVLLEFKELMMAQEFIQKGGIDYARELLEKSLGTQKAVDIINNLGSALQSRPFEFVRRAD 124 Query: 135 ARQVASIIQNEHPQIQTIVLSYLEPEQSAEILSQFPEQVRLDLVMRIANLEEVQPAALQE 194 + + IQ EHPQ ++LSYL+P++++ ILS P +V+ ++ RIA ++ P ++E Sbjct: 125 PANILNFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVRE 184 Query: 195 LNDIMEKQFAGAAGAQAAKMGGLKAAANIMNYLDTNIEGQLMDSIRESDEEMSQQIQDLM 254 + ++EK+ A + GG+ I+N D E +++S+ E D E++++I+ M Sbjct: 185 VERVLEKKLASLSSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEIKKKM 244 Query: 255 FVFENLIDVDDRGIQTMLREVPGDLLQRALKGSDDQMREKVFKNMSKRAAEMLADDLEAM 314 FVFE+++ +DDR IQ +LRE+ G L +ALK D ++EK+FKNMSKRAA ML +D+E + Sbjct: 245 FVFEDIVLLDDRSIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDMEFL 304 Query: 315 GPIRVSEVEAAQKEILSIARRLADAGEIMLGAGGGEEFL 353 GP R +VE +Q++I+S+ R+L + GEI++ GG E+ L Sbjct: 305 GPTRRKDVEESQQKIVSLIRKLEEQGEIVISRGGEEDVL 343
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 297 bits (761), Expect = 6e-96 Identities = 174/576 (30%), Positives = 283/576 (49%), Gaps = 61/576 (10%) Query: 15 KSSALGFLSNTDVLRQITLILGLAICLAIAVFILLWGKEPDMRPL-GTYTTQELVKTLDY 73 + L +L+ +I LI+ + +AI V ++LW K PD R L + Q+ + Sbjct: 9 QPKPLEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQ 68 Query: 74 LDQQKIPYQV--DGKSVLVSAENYSSIRLALTRAGLANATDTTSDGEDILLKDSSFGVSQ 131 L Q IPY+ ++ V A+ +RL L + GL + G + LL FG+SQ Sbjct: 69 LTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQGLPK---GGAVGFE-LLDQEKFGISQ 124 Query: 132 RMESERLKLSRERQLASAIEQFQNVAKAQVLLAIPKDNVFARNERKPSATVVLSLK-GNA 190 E + + E +LA IE V A+V LA+PK ++F R ++ PSA+V ++L+ G A Sbjct: 125 FSEQVNYQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRA 184 Query: 191 LGQGEVDSIVDMVASAVHGLEPTRVTVTDQNGRLLNSGSQDPVSAQTRKEFAMQQKQELE 250 L +G++ ++V +V+SAV GL P VT+ DQ+G LL + ++ ++E Sbjct: 185 LDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDA---QLKFANDVE 241 Query: 251 --YKQKIDAILIPVLGADNYTAEVDLSLDFSQQEQTRKTYNPDLPAVRSEMTME-----E 303 +++I+AIL P++G N A+V LDF+ +EQT + Y+P+ A ++ + E Sbjct: 242 SRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISE 301 Query: 304 NSANGSNGGVPGALSNQPP---------------AASNIPQQATGPNAETTASSSGRSRK 348 G GGVPGALSNQP A N PQ +T N+ ++ +++ Sbjct: 302 QVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSN--SAGPRSTQR 359 Query: 349 EATRNFELDTTVSHIRRQMGGIRRMTVSVAVDYKASTAADGKVTREPRTQPELDTLRRLL 408 T N+E+D T+ H + +G I R++V+V V+YK T ADGK P T ++ + L Sbjct: 360 NETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYK--TLADGK--PLPLTADQMKQIEDLT 415 Query: 409 SGGLGFDVTRGDTLEVVAIPFNRPELESVAEAPLYEQPWFWRAVRIAASVLVIIV----L 464 +GF RGDTL VV PF+ + + E P ++Q F + A L+++V L Sbjct: 416 REAMGFSDKRGDTLNVVNSPFSAVD-NTGGELPFWQQQSFIDQLLAAGRWLLVLVVAWIL 474 Query: 465 IVTVVRPMLKRLLYPDAKPEGELDFDNHTVLGGDDELSLLAAQAESEPVFGVRDGHL-KL 523 VRP L R + +AK E + + E+ V +D L + Sbjct: 475 WRKAVRPQLTRRV-EEAKAAQE-------------QAQVRQETEEAVEVRLSKDEQLQQR 520 Query: 524 PD--LHRDEDLLKAVRALVANEPDLAAQVIKEWVAN 557 E + + +R + N+P + A VI++W++N Sbjct: 521 RANQRLGAEVMSQRIREMSDNDPRVVALVIRQWMSN 556
>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE signature. Length = 103 Score = 57.7 bits (139), Expect = 1e-14 Identities = 31/91 (34%), Positives = 50/91 (54%) Query: 15 LKVEAGATPLTQPGRQVTSDFGQLLQQALGNVNELQGAANDLRTRFDMGDNSVDLSQVMI 74 L+ A + + Q T F L AL +++ Q AA +F +G+ V L+ VM Sbjct: 13 LQATAMSARAQESLPQPTISFAGQLHAALDRISDTQTAARTQAEKFTLGEPGVALNDVMT 72 Query: 75 AGQKSSIAFEATVQVRNKMVDAYKTIMNMPV 105 QK+S++ + +QVRNK+V AY+ +M+M V Sbjct: 73 DMQKASVSMQMGIQVRNKLVAAYQEVMSMQV 103
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 28.8 bits (64), Expect = 0.007 Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 5/58 (8%) Query: 92 RGQGVASLLVTEILSRARRAGISKLYLQTENLTGGV---YCRHGFK--ALEEVHYKGL 144 R +GV + L+ + + A+ L L+T+++ Y +H F A++ + Y Sbjct: 102 RKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFIIGAVDTMLYSNF 159
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 70.0 bits (171), Expect = 2e-13 Identities = 82/331 (24%), Positives = 127/331 (38%), Gaps = 76/331 (22%) Query: 4352 GGRGDDVFYATGTSNIFTGGAGQDTGIMMGRENMMFGGQGDDVAVLAGRVNRAFMGEGND 4411 G D F+ + ++IF G G D + G G+D R + +GND Sbjct: 724 GTTRADKFFGSKFTDIFHGADGDDL---------IEGNDGND---------RLYGDKGND 765 Query: 4412 QAFIFGEEGIVEGGAGQDYLVTSGNYNQIDAGSDQDFTVTIGHHNQIRLGEGDDFAMVFG 4471 + GG G D Q+ G D + + +N + G+GDD V G Sbjct: 766 ---------TLSGGNGDD---------QLYGGDGNDKLIGVAGNNYLNGGDGDDEFQVQG 807 Query: 4472 NHNRLLAEHGNNQVKLMGYHATIRGGDGQDRLIADQVAKFSQLDGGAGDDLLVLGGYQNQ 4531 N N + GG G D+L + A LDGG GDDLL Sbjct: 808 N------SLAKNV---------LFGGKGNDKLYGSEGADL--LDGGEGDDLL-------- 842 Query: 4532 FSGGTGVDSFVF-SGAVIKNLVQDIGKEDFIVFNDVSWRDLWFKRSGYDLQLLVNRHTDG 4590 GG G D + + SG + D GKED + D+ +RD+ FKR G D L++ + Sbjct: 843 -KGGYGNDIYRYLSGYGHHIIDDDGGKEDKLSLADIDFRDVAFKREGND--LIMYKGEGN 899 Query: 4591 TSEQGKFEQLGSATFSNYF-------ADNRAQLVIGLGEQQADGERSYSALS-HQAVDKL 4642 G + TF N+F +++ + + + + AL Q +K Sbjct: 900 VLSIGHKNGI---TFRNWFEKESGDISNHEIEQIFDKSGRIITPDSLKKALEYQQRNNKA 956 Query: 4643 IQAMSSFAPEAGDMGLLNRLDSQANSLVQSA 4673 + A G G LN L ++ + ++ +A Sbjct: 957 SYVYGNDALAYGSQGDLNPLINEISKIISAA 987 Score = 51.1 bits (122), Expect = 1e-07 Identities = 45/167 (26%), Positives = 68/167 (40%), Gaps = 19/167 (11%) Query: 4334 GGDGKDLGAYLGDNNNFWGGRGDDVFYATGTSNIFTGGAGQDTGIMMGRENMMFGGQGDD 4393 G DG DL N+ +G +G+D + GG G D I + N + GG GDD Sbjct: 742 GADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLIGVAGNNYLNGGDGDD 801 Query: 4394 VAVLAG---RVNRAFMGEGNDQAFIFGEEGIVEGGAGQDYL------------VTSGNYN 4438 + G N F G+GND+ + +++GG G D L G++ Sbjct: 802 EFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKGGYGNDIYRYLSGYGHHI 861 Query: 4439 QIDAGSDQDFTVTIGHHNQIRLG---EGDDFAMVFGNHNRLLAEHGN 4482 D G +D +++ + + EG+D M G N L H N Sbjct: 862 IDDDGGKED-KLSLADIDFRDVAFKREGNDLIMYKGEGNVLSIGHKN 907 Score = 39.6 bits (92), Expect = 4e-04 Identities = 32/138 (23%), Positives = 57/138 (41%), Gaps = 3/138 (2%) Query: 13 FTGNYTADDGNNDIDAYGLGGVIHAYGGDDTIRVGSIGATVYTGTGNDSVYGGAAYLKVV 72 FT + DG++ I+ ++ G+DT+ G+ +Y G GND + G A + Sbjct: 736 FTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLIGVAGNNYLN 795 Query: 73 DDSGN--LTVKGAAGYADISKSQSGNVHFAGASGATNIDHQGRDGDIRYQGAALANFLTR 130 G+ V+G + ++ GN G+ GA +D G D+ G + Sbjct: 796 GGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLD-GGEGDDLLKGGYGNDIYRYL 854 Query: 131 KGISGNVSFEGAGGYNKL 148 G ++ + G +KL Sbjct: 855 SGYGHHIIDDDGGKEDKL 872
>RTXTOXINC#Gram-negative bacterial RTX toxin-activating protein C signature. Length = 170 Score = 74.9 bits (184), Expect = 7e-20 Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 1/104 (0%) Query: 14 MLGGVMLLSQHSSLHRRYSVAEWQQRILPAFELNQFCYYEDSCGRPVAFCNWAFVSLSIR 73 +LG V L S LHR + V+ + +LPA + NQ+ PVA+C+WA +SL Sbjct: 9 ILGHVSWLWASSPLHRNWPVSLFAINVLPAIQANQYVLLTRD-DYPVAYCSWANLSLENE 67 Query: 74 DTLLAAERELIREDWQSGDHIFIPEMIAPYGHARAVVSDLRRRI 117 L L+ EDW SGD + + IAP+G A+ +R++ Sbjct: 68 IKYLNDVTSLVAEDWTSGDRKWFIDWIAPFGDNGALYKYMRKKF 111
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 349 bits (897), Expect = e-118 Identities = 153/458 (33%), Positives = 234/458 (51%), Gaps = 9/458 (1%) Query: 5 TWLARFRQPRPPRQADTHYGFLPAHLALAETPPSPFARITALTLSAGVLLTLLWACWGEL 64 TW R + P R+ D FLPAHL L ETP S R+ A + +++ + + G++ Sbjct: 22 TWKIRKQLDTPVREKD-ENEFLPAHLELIETPVSRRPRLVAYFIMGFLVIAFILSVLGQV 80 Query: 65 DIQATASGRLLVLGRSQMIQSYEQARVVSIHVEDGQAVAADAPLLTLNTLGVSQDLSRLR 124 +I ATA+G+L GRS+ I+ E + V I V++G++V LL L LG D + + Sbjct: 81 EIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQ 140 Query: 125 QQQAFQYQTLIRYQSLYRDQTPDQHPDY-LRLTPEQQQALVENYQSELHEFHSTLGNLQA 183 RYQ L R ++ P+ L P Q E Q Sbjct: 141 SSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQN 200 Query: 184 ELGVNQANQAARRGDMASL-------TTLLANIRPRLQARQTLSQSHAISRVEYLEQEKE 236 + + N +R + ++ L + RL +L AI++ LEQE + Sbjct: 201 QKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENK 260 Query: 237 LLETQRQLAQQRAELEVLQSQQQSLQERLAGFKAQKQREWIEKRQQARLQLTAIEQELAK 296 +E +L +++LE ++S+ S +E + E ++K +Q + + ELAK Sbjct: 261 YVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAK 320 Query: 297 LREREHLEVIRAPVAGTVQQLAIHTQGAVVQPAQQLLVIVPNEGVQLAEVKILNKDIGFV 356 ER+ VIRAPV+ VQQL +HT+G VV A+ L+VIVP + + NKDIGF+ Sbjct: 321 NEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFI 380 Query: 357 HEGQAVSIKVDAFPYTRYGTIDGELVSVSRDATADEQLGLVFAARVKLSRDEMLIDQQPV 416 + GQ IKV+AFPYTRYG + G++ +++ DA D++LGLVF + + + + + + Sbjct: 381 NVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVIISIEENCLSTGNKNI 440 Query: 417 KLTPGMSVVAEIKTDRRRVIDYLLSPIREYQAEALRER 454 L+ GM+V AEIKT R VI YLLSP+ E E+LRER Sbjct: 441 PLSSGMAVTAEIKTGMRSVISYLLSPLEESVTESLRER 478
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 90.7 bits (225), Expect = 4e-23 Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 1/120 (0%) Query: 13 KILLVEDDKLLNHHLSTLLTEAQNQVHSTDSAQVALHYAADYPIDVAIIDLGLPDMDGLQ 72 IL+ +DD + L+ L+ A V T +A + A D+ + D+ +PD + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 73 LIRQLREQQIPFPIIVLTARGNWQDKVEGLEAGADDYLVKPFQKDELLARL-NALVRRSA 131 L+ ++++ + P++V++A+ + ++ E GA DYL KPF EL+ + AL Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124
>PF06580#Sensor histidine kinase Length = 349 Score = 41.0 bits (96), Expect = 6e-06 Identities = 17/99 (17%), Positives = 34/99 (34%), Gaps = 21/99 (21%) Query: 362 LLDNAFKFAIS------EIKVTVSRRLDRLRIEIEDDGPGIDPGKSQQIFQRGVRADSSP 415 L++N K I+ +I + ++ + +E+E+ G + Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKE------------- 309 Query: 416 GQGIGLAVVTE-IVHSYGGQIMVD-ESPLGGARFTLDLP 452 G GL V E + YG + + G + +P Sbjct: 310 STGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLIP 348
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 35.2 bits (81), Expect = 3e-04 Identities = 19/117 (16%), Positives = 40/117 (34%), Gaps = 3/117 (2%) Query: 83 RLDSAALRLSLEQAQAEQAKWESNVRFARAEFGRLATLHRQKSTSQSQYDKARYDVEQAE 142 + +A E ++S + +E ++ +Q ++ + Q Sbjct: 251 KHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQL--VTQLFKNEILDKLRQTT 308 Query: 143 LAERLARVQVRQIEEQLRRSHIFAPFDGVVNNHFIQ-PGEHVDAGEQALELVNPDQP 198 L +++ + EE+ + S I AP V + G V E + +V D Sbjct: 309 DNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDT 365 Score = 35.2 bits (81), Expect = 3e-04 Identities = 27/120 (22%), Positives = 47/120 (39%), Gaps = 9/120 (7%) Query: 45 VSGTVA-SRQQAALSAEVSGRVEWIA-EFGSRVSKGDELLRLDSAALRLSLEQAQAEQAK 102 +G + S + + + V+ I + G V KGD LL+L + A+A+ K Sbjct: 86 ANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTAL-------GAEADTLK 138 Query: 103 WESNVRFARAEFGRLATLHRQKSTSQSQYDKARYDVEQAELAERLARVQVRQIEEQLRRS 162 +S++ AR E R L R ++ K + ++E I+EQ Sbjct: 139 TQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTW 198
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 542 bits (1399), Expect = e-179 Identities = 236/1046 (22%), Positives = 446/1046 (42%), Gaps = 61/1046 (5%) Query: 3 LAKTAIERPIWVAVSIVLIFLLGLLSIRGLPIQLFPDIDRPHLNISVDWRSASPQEMESE 62 +A I RPI+ V +++ + G L+I LP+ +P I P +++S ++ A Q ++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 63 ITDPIEQEMQGVQGLKNLTSNSFP-GFTEIDLEFALGTDMQRAQLDVISRLNRV-SGLPD 120 +T IEQ M G+ L ++S S G I L F GTD AQ+ V ++L LP Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 121 KIGGPYVNNYSSNDTLTFFFIQQLPGAKGQIDDHQALIEARVKPELERIPGVSTVDIEGI 180 ++ ++ S+ + DD + + VK L R+ GV V + G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG- 179 Query: 181 NERQIQIRFDPYRAAELGVEIPVLAS-------RASTGWDVSAGTLDIGRWEYKLRFAGR 233 + ++I D + + + + + + G L + + R Sbjct: 180 AQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 234 -YDVVTLGDKVVD-WRDGLPIYLRDVAEIQLAREENPVLRIQNGNTAIAAQIFKESGANA 291 + G + DG + L+DVA ++L E V+ NG A I +GANA Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 292 LAALEAIKLKVGELNREMLEPVGLHMEQSFDASLYINRAVGMVTANLGLGVLLSCAILWV 351 L +AIK K+ EL P G+ + +D + ++ ++ V L ++L ++++ Sbjct: 300 LDTAKAIKAKLAELQPFF--PQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYL 357 Query: 352 FLRQLKATLMIAIAIPISIMLTFCLLKVLGRTLNVISLAGIAFAVGMVLDAAIVVLESIY 411 FL+ ++ATL+ IA+P+ ++ TF +L G ++N +++ G+ A+G+++D AIVV+E++ Sbjct: 358 FLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVE 417 Query: 412 RRHERGDLSKAEAALEGTSRVWTALVASTLTTVAIFLPVLLLNDVEGQLFADLALTIACA 471 R L EA + S++ ALV + A+F+P+ G ++ ++TI A Sbjct: 418 RVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSA 477 Query: 472 VTVSMLVAVTVLPAVAARWMG---------RERLIDPYEGLWQGTTRR---VIRWTGTSR 519 + +S+LVA+ + PA+ A + + + + + + S Sbjct: 478 MALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGST 537 Query: 520 QRWTVITLMMSLPALATWALLPKMDYLPDVKRDAVDVWMNFTPGFNLQAQREEVIDTLIA 579 R+ +I ++ + + LP +LP+ + + G + + ++V+D + Sbjct: 538 GRYLLIYALIVAGMVVLFLRLPS-SFLPEEDQGVFLTMIQLPAGATQE-RTQKVLDQVTD 595 Query: 580 RLAPYMKGERE--PALKNYYILRYPGGAQ------IGVRP------KEEDQIKVLEQLLM 625 Y+K E+ ++ + G AQ + ++P E V+ + M Sbjct: 596 Y---YLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKM 652 Query: 626 KQLLVGIPD--TQVFGGQGSLFGGFDSENGISLLLQGGDLAELYQAARAAMAIVKQDLPG 683 + L I D F + G + L+ Q G + AR + + P Sbjct: 653 E--LGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPA 710 Query: 684 AQVRPQPDLDFTAPELRLVPQDRRLAEVGWDRTPMPAIIQTFGDGLRVGEYFDGEERLDI 743 + V +P+ + +L + +G + + I T G V ++ D + Sbjct: 711 SLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKL 770 Query: 744 MLMGQTSA--NPDELKAVPLATPSGRIVPLGELLRVEHDMGPASIFRADGRRSISLQISP 801 + P+++ + + + +G +VP G + R +G S+ +Q Sbjct: 771 YVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEA 830 Query: 802 PAGMSMEQVLDTLQSKSFAAIRPLLPAGGELRVSGNADSLQQALGNLGAIFLFAVMILLI 861 G S + ++ + LPAG +G + + + A+ + +++ + Sbjct: 831 APGTSSGDAMALME-----NLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFL 885 Query: 862 LLWGVFASLKDAVLVLLTLPLATVGGVLALHLSGLLVPLPMDLLTIIGFVILLGLVVNNA 921 L ++ S V V+L +PL VG +LA L D+ ++G + +GL NA Sbjct: 886 CLAALYESWSIPVSVMLVVPLGIVGVLLAATLFN----QKNDVYFMVGLLTTIGLSAKNA 941 Query: 922 ILLVHQTRTA-EREGMSRQLAVADALQSRMRPIAMTSLTSIFGMLPLMLSPSEGSEIYRG 980 IL+V + E+EG A A++ R+RPI MTSL I G+LPL +S GS Sbjct: 942 ILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNA 1001 Query: 981 LATVIVGGMSCSTLFTLILLPAFLRL 1006 + ++GGM +TL + +P F + Sbjct: 1002 VGIGVMGGMVSATLLAIFFVPVFFVV 1027
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 66.6 bits (162), Expect = 1e-15 Identities = 22/108 (20%), Positives = 42/108 (38%), Gaps = 4/108 (3%) Query: 5 DTKNRILDAAEVLFAERGFADTSLRLITSEADVNLASVNYHFGSKKELIQAVLDRYLSLF 64 +T+ ILD A LF+++G + TSL I A V ++ +HF K +L + + S Sbjct: 11 ETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSES-- 68 Query: 65 MPELDARLHTLMAQEQLTLLQVFESFVDPLMKLVAVRTNGPAIFMQLL 112 + A+ L V + +++ + + Sbjct: 69 --NIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIF 114
>PF06580#Sensor histidine kinase Length = 349 Score = 32.9 bits (75), Expect = 0.001 Identities = 37/184 (20%), Positives = 62/184 (33%), Gaps = 36/184 (19%) Query: 177 RQVEGLTHLIEDLRVLSLNDSGHLELQHSEVKLADELAVVLEAFATPLAASG--FTLKRE 234 + E LT L E +R SL S +V LADEL VV + + Sbjct: 192 KAREMLTSLSELMR-YSLRYS-----NARQVSLADELTVVDSYLQLASIQFEDRLQFENQ 245 Query: 235 LDAELCVCCDALRIRQALMALLENAQKHAV-----PGMLTVRLHRSGAQCILSVEDEGPG 289 ++ + D + L+EN KH + G + ++ + L VE+ G Sbjct: 246 INPAIM---DVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSL 302 Query: 290 ISEEVAAYIFEAFRRGDPSRSRKSGGSGLGLA-VVKAIAEAHGGSAVCQPTER-GGTTFT 347 + +G GL V + + +G A + +E+ G Sbjct: 303 ALKNT------------------KESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAM 344 Query: 348 LSWP 351 + P Sbjct: 345 VLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 87.2 bits (216), Expect = 7e-22 Identities = 31/132 (23%), Positives = 59/132 (44%), Gaps = 1/132 (0%) Query: 16 VLIAEDEAEIADILAAYLQRHGLRTLHAADGREALAMHQTCKPDLLLLDVQMPQLDGWQV 75 +L+A+D+A I +L L R G ++ DL++ DV MP + + + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 76 LSEIRARG-DMPVIMLTALDQDLDKLMGLRMGADDYVVKPFNPAEVVARVQAVLRRSQAA 134 L I+ D+PV++++A + + + GA DY+ KPF+ E++ + L + Sbjct: 66 LPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKRR 125 Query: 135 KQATARVLRVGP 146 + G Sbjct: 126 PSKLEDDSQDGM 137
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 42.9 bits (101), Expect = 2e-06 Identities = 21/124 (16%), Positives = 49/124 (39%), Gaps = 9/124 (7%) Query: 125 VTALRSAEIRAQISGIVQRRLFEQGAEISAGTVLFQINPAPFKADVDSAAAALLRAQAVL 184 + RS EI+ + IV+ + ++G + G VL ++ +AD ++LL+A+ Sbjct: 91 THSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQ 150 Query: 185 ARARIQIDRLVPLLRTEAISRQTYDDAVSQRDQAAADVAQAKATLARHQLNLQFASVEAP 244 R +I +I + + +V++ + + QF++ + Sbjct: 151 TRYQILSR---------SIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQ 201 Query: 245 IAGR 248 + Sbjct: 202 KYQK 205 Score = 34.0 bits (78), Expect = 0.001 Identities = 41/258 (15%), Positives = 89/258 (34%), Gaps = 41/258 (15%) Query: 119 EDLPARVTALR--SAEIRAQISGIVQRRLFEQGAEISAGTVLFQINP-APFKADVDSAAA 175 + AR+ S ++++ L + A I+ VL Q N ++ + Sbjct: 217 LTVLARINRYENLSRVEKSRLDDF--SSLLHKQA-IAKHAVLEQENKYVEAVNELRVYKS 273 Query: 176 ALLRAQAVLARARIQIDRLVPLLRTEAISRQTYDDAVSQRDQAAADVAQAKATLARHQLN 235 L + ++ + A+ + + L + E + + Q ++ LA+++ Sbjct: 274 QLEQIESEILSAKEEYQLVTQLFKNEILD---------KLRQTTDNIGLLTLELAKNEER 324 Query: 236 LQFASVEAPIAGRIDQALV-SEGALVSPTD-------------ATPMARIQQIDQVYVDV 281 Q + + AP++ ++ Q V +EG +V+ + T + + + I + V Sbjct: 325 QQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVG- 383 Query: 282 RQPASVLDTLRQQAGSTAPELA--VAILGSDGKPLGMQGRILFSGIEVDAGTGDVLLRVL 339 Q A + + L V + D G + I ++ + Sbjct: 384 -QNAIIKVEAFPY--TRYGYLVGKVKNINLDAIEDQRLGLVFNVIISIEENC------LS 434 Query: 340 VDNPERRLLPGLYVQARI 357 N L G+ V A I Sbjct: 435 TGNKNIPLSSGMAVTAEI 452
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1054 bits (2728), Expect = 0.0 Identities = 508/1028 (49%), Positives = 701/1028 (68%), Gaps = 7/1028 (0%) Query: 1 MPQFFIHRPVFAWVIALFIVLAGVIAIPKLPISHYPSVAPVSVTLYATYSGATPQTLNDA 60 M FFI RP+FAWV+A+ +++AG +AI +LP++ YP++AP +V++ A Y GA QT+ D Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VVSLIERELSGVKNLLYFESSVDASGSAQITATFKPGTDPELAQMDVQNRIKAVEPRLPQ 120 V +IE+ ++G+ NL+Y S+ D++GS IT TF+ GTDP++AQ+ VQN+++ P LPQ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 121 AVRQNGLQVESASSGFLMMVGMTSPDGRFEEVALNDYMARNIVQELRRIDGVGRVQLFGA 180 V+Q G+ VE +SS +LM+ G S + + ++DY+A N+ L R++GVG VQLFGA Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 181 EQAMRIWVDPGKLAAYGLTISEVAQAIEQQNVQIAPGRLGDEPALPGQRLTVPLTVEGQL 240 + AMRIW+D L Y LT +V ++ QN QIA G+LG PALPGQ+L + + + Sbjct: 181 QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240 Query: 241 TTPEAFAAIVLRAGTDGAKLVLGDVARVELGAQSYAFANRENGVAATSAAIQLSPGANAV 300 PE F + LR +DG+ + L DVARVELG ++Y R NG A I+L+ GANA+ Sbjct: 241 KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300 Query: 301 RTADAVRTRLAQLSPTLPAGMAYSIPFDSAPFVKVSIEKVIHTLLEAMVLVFLVMFLFLQ 360 TA A++ +LA+L P P GM P+D+ PFV++SI +V+ TL EA++LVFLVM+LFLQ Sbjct: 301 DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360 Query: 361 NLRYTLIPAIVAPIALLGTFAVMLLAGFSINSLTMFGMVLAIGIIVDDAIVVVENVERLM 420 N+R TLIP I P+ LLGTFA++ G+SIN+LTMFGMVLAIG++VDDAIVVVENVER+M Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 Query: 421 ASRGLSPREATSQAMKEISGAVIGITLVLTAVFIPMAFGGGSVGVIYQQFTLSMAVSILF 480 L P+EAT ++M +I GA++GI +VL+AVFIPMAF GGS G IY+QF++++ ++ Sbjct: 421 MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480 Query: 481 SAFLALTLTPALCATLLRPISPDHHE-KRGFFGAFNRGVERLTAGYGARVTSLVGRSGRV 539 S +AL LTPALCATLL+P+S +HHE K GFFG FN + Y V ++G +GR Sbjct: 481 SVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRY 540 Query: 540 MATFAALCAVLAIAATQLPSSFLPDEDQGYFMTSIQLPTGATSERTQAVIKEFEAHV--A 597 + +A + A + + +LPSSFLP+EDQG F+T IQLP GAT ERTQ V+ + + Sbjct: 541 LLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKN 600 Query: 598 SREALDTNLVVQGFSFSGAGPNAAMAFTMLKDWDQRHGA--TAAEEAELAQAAMANSHEG 655 + +++ V GFSFSG NA MAF LK W++R+G +A A+ + +G Sbjct: 601 EKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDG 660 Query: 656 TVMSLMPPTIDELGTASGFTLFLQDRANRGEAALLAAQAQLLALAA-NSKVVSDVYPDSL 714 V+ P I ELGTA+GF L D+A G AL A+ QLL +AA + + V P+ L Sbjct: 661 FVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGL 720 Query: 715 PPGQSVHLEINRQKAEAMGLSFTSVSSTLSAAMGSLYVNDFPNDGHMQQVILQADASARM 774 LE++++KA+A+G+S + ++ T+S A+G YVNDF + G ++++ +QADA RM Sbjct: 721 EDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRM 780 Query: 775 QLDDVLGLRVRNASGGMVPLREVVTPVWRESPQQMMRFDGFPAVRIAGGAAPGISSGAAM 834 +DV L VR+A+G MVP T W ++ R++G P++ I G AAPG SSG AM Sbjct: 781 LPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAM 840 Query: 835 AEMERLVAQLPPGFAVAWTGQSLQERQSAAQAPLLMLLSGLVVFLVLAALYESWSIPLSV 894 A ME L ++LP G WTG S QER S QAP L+ +S +VVFL LAALYESWSIP+SV Sbjct: 841 ALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSV 900 Query: 895 MLVVPLGLLGAVAAVMLRGMPNDVFFKVGMITIIGLSAKNAILIVEFARQLH-GEGRSLL 953 MLVVPLG++G + A L NDV+F VG++T IGLSAKNAILIVEFA+ L EG+ ++ Sbjct: 901 MLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVV 960 Query: 954 DAAVTAARLRLRPILMTSLAFTLGVVPLMLASGASAETQHAIGTGVFGGMISGTLLAIFF 1013 +A + A R+RLRPILMTSLAF LGV+PL +++GA + Q+A+G GV GGM+S TLLAIFF Sbjct: 961 EATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFF 1020 Query: 1014 VPVFFVFI 1021 VPVFFV I Sbjct: 1021 VPVFFVVI 1028 Score = 78.3 bits (193), Expect = 9e-17 Identities = 58/321 (18%), Positives = 121/321 (37%), Gaps = 13/321 (4%) Query: 719 SVHLEINRQKAEAMGLSFTSVSSTLSAA---MGSLYVNDFPNDGHMQQVILQADASARMQ 775 ++ + ++ L+ V + L + + + P QQ+ A R + Sbjct: 183 AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG-QQLNASIIAQTRFK 241 Query: 776 -LDDVLGLRVR-NASGGMVPLREVVTPVW-RESPQQMMRFDGFPAVRIAGGAAPGIS--- 829 ++ + +R N+ G +V L++V E+ + R +G PA + A G + Sbjct: 242 NPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALD 301 Query: 830 -SGAAMAEMERLVAQLPPGFAVAWTGQSLQERQSAAQAPLLMLLSGLV-VFLVLAALYES 887 + A A++ L P G V + + Q + + L ++ VFLV+ ++ Sbjct: 302 TAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQN 361 Query: 888 WSIPLSVMLVVPLGLLGAVAAVMLRGMPNDVFFKVGMITIIGLSAKNAILIVE-FARQLH 946 L + VP+ LLG A + G + GM+ IGL +AI++VE R + Sbjct: 362 MRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMM 421 Query: 947 GEGRSLLDAAVTAARLRLRPILMTSLAFTLGVVPLMLASGASAETQHAIGTGVFGGMISG 1006 + +A + ++ ++ + +P+ G++ + M Sbjct: 422 EDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALS 481 Query: 1007 TLLAIFFVPVFFVFIIGAQER 1027 L+A+ P ++ Sbjct: 482 VLVALILTPALCATLLKPVSA 502
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 58.5 bits (141), Expect = 2e-12 Identities = 44/193 (22%), Positives = 71/193 (36%), Gaps = 19/193 (9%) Query: 1 MSGGRVLITGATSGIGFQLALDYRRAGWQVWGCGRDGERLL----ALGRHGITPLQF--D 54 + G ITGA GIG +A G + + E+L +L F D Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 55 GRDASAVSEA----AASLPRVDLVILNAGNCEYMDVAEGFDGALFARIIETNLVATGHAL 110 RD++A+ E + +D+++ AG + D T V + Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSD----EEWEATFSVNSTGVF 121 Query: 111 AAFLPLLGA-----GGRLAIVSSSVSWLPLPRAEAYGASKAALDYLADTLRLDLAGKGIG 165 A + G + V S+ + +P AY +SKAA L L+LA I Sbjct: 122 NASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIR 181 Query: 166 VTLIRPGFVQTPL 178 ++ PG +T + Sbjct: 182 CNIVSPGSTETDM 194
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 29.7 bits (66), Expect = 0.032 Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 11/82 (13%) Query: 161 LDEDGFVIHRPPAPRGEPLPWQPLAERHFVDAALGELTADPRWPVGEAEASRRLNDFLEQ 220 +DE+G+ IHRP E A F+ LG ++AD R EA RL++FL Sbjct: 362 MDENGYPIHRPGIAGVET------AYTRFITDILG-VSADSRPDSNEA----RLHEFLSD 410 Query: 221 AVLDYGETRDFPAIAGTSVLSP 242 +D + T +SP Sbjct: 411 GTIDEESAKQILKDTLTGEMSP 432
>NAFLGMOTY#Sodium-type flagellar protein MotY precursor signature. Length = 293 Score = 30.1 bits (67), Expect = 0.009 Identities = 33/122 (27%), Positives = 49/122 (40%), Gaps = 26/122 (21%) Query: 163 FAYHDWQQLCARGITASALIRFHSRY-----------KYLVLSHATT--HYRALGKLLGN 209 F+Y DWQ R A + + F S+Y KY A T HY G L Sbjct: 137 FSYQDWQSRDQRIEVALSSVLFQSKYNAFSDCIANLLKYSFEDIAFTILHYERQGDQLTK 196 Query: 210 LAKADLQQVADSYIKG-------LMAALTLRANRRSHTNVLMH-----LQGYFKRVLTPA 257 +K L Q+AD Y++ L+A T + +S + L L+ YF+ + P Sbjct: 197 ASKKRLAQIAD-YVRHNQDIDLVLVATYTDSTDGKSESQSLSERRAESLRTYFESLGLPE 255 Query: 258 QK 259 + Sbjct: 256 DR 257
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 47.2 bits (112), Expect = 1e-08 Identities = 44/202 (21%), Positives = 76/202 (37%), Gaps = 31/202 (15%) Query: 1 MKKVALSVLV-LAGFASTSALAEDAFS-YAKGGLTWAHTK-SDYIGGKDSNNRD------ 51 MKK A+++ V LAGFA+ + A + Y L W+ + +I + + Sbjct: 1 MKKTAIAIAVALAGFATVAQAAPKDNTWYTGAKLGWSQYHDTGFINNNGPTHENQLGAGA 60 Query: 52 FGG--LNLDLSKSFGSNFYGRLGSEYTSRNDGNDSMGISSLGLGVYTPLSTGLNLYGEAG 109 FGG +N + G ++ GR+ + + N + G+ Y P++ L++Y G Sbjct: 61 FGGYQVNPYVGFEMGYDWLGRMPYKGSVENGAYKAQGVQLTAKLGY-PITDDLDIYTRLG 119 Query: 110 LMGYTMERQVAANVKDSGWDVITRKNSGSMYGEAGLRYDIGAVELSTGYRYANMTD---- 165 G +NV D S G+ Y I E++T Y + Sbjct: 120 --GMVWRADTKSNVYGKNHDTGV-----SPVFAGGVEYAITP-EIATRLEYQWTNNIGDA 171 Query: 166 -------DMHDFKVGAAYKVSQ 180 D +G +Y+ Q Sbjct: 172 HTIGTRPDNGMLSLGVSYRFGQ 193
>ECOLIPORIN#E.coli/Salmonella-type porin signature. Length = 383 Score = 231 bits (591), Expect = 2e-75 Identities = 138/387 (35%), Positives = 206/387 (53%), Gaps = 34/387 (8%) Query: 1 MKKTALTMAISSVLLAGGAQAATVYNQNDTKLDIGGRAQGMYYGTDDNGSEGDQSYLRLH 60 MK+ L + I ++L AG A AA +YN++ KLD+ G+ G++Y +DD+ +GDQ+Y+R+ Sbjct: 1 MKRKVLALVIPALLAAGAAHAAEIYNKDGNKLDLYGKVDGLHYFSDDSSKDGDQTYMRVG 60 Query: 61 VAGETKIDNELTAFGFAEYNLPVSGSDNDE----LRYAYAGIKHDRFGAFSYGRQDGLFT 116 GET+I+++LT +G EYN+ + ++ + R A+AG+K +G+F YGR G+ Sbjct: 61 FKGETQINDQLTGYGQWEYNVQANTTEGEGANSWTRLAFAGLKFGDYGSFDYGRNYGVLY 120 Query: 117 KAVNNYTDVLPEWGGDGLGKDTEVFGTGRTNGLAQYIYT-----YQGLTLGAQFTGNNDP 171 V +TD+LPE+GGD + + TGR NG+A Y T GL Q+ G N+ Sbjct: 121 D-VEGWTDMLPEFGGDSYTY-ADNYMTGRANGVATYRNTDFFGLVDGLNFALQYQGKNES 178 Query: 172 QNADRSPTSWT---------KGSTEGFAVSANYDFDMGLSLGTAYNQAGKTDEQ--AANA 220 Q+AD + +GF +S YD MG S G AY + +T+EQ A Sbjct: 179 QSADDVNIGTNNRNNGDDIRYDNGDGFGISTTYDIGMGFSAGAAYTTSDRTNEQVNAGGT 238 Query: 221 AFGGDRDAKLYGVGAKYAVGDLYLAATYSHGEDHMYV-----STFNGYAEKMDGYEAVAQ 275 GGD+ A + G KY ++YLA YS + G A K +E AQ Sbjct: 239 IAGGDK-ADAWTAGLKYDANNIYLATMYSETRNMTPYGKTDKGYDGGVANKTQNFEVTAQ 297 Query: 276 YAFG-KFKPSLAYLRTDVKD----NARGIDDTATEYVSIGAWYNFTDNFNAYVDYKINLL 330 Y F +P++++L + KD N G D +Y +GA Y F NF+ YVDYKINLL Sbjct: 298 YQFDFGLRPAVSFLMSKGKDLTYNNVNGDDKDLVKYADVGATYYFNKNFSTYVDYKINLL 357 Query: 331 DNVNGTHTNSLGKNTDDVVAVALQYNF 357 D+ + G +TDD+VA+ + Y F Sbjct: 358 DD-DDPFYKDAGISTDDIVALGMVYQF 383
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 65.6 bits (160), Expect = 8e-14 Identities = 78/368 (21%), Positives = 145/368 (39%), Gaps = 24/368 (6%) Query: 18 LLVILGFFVVMPMIS--LRFVDQLGWAAGVVGLALGLRQLTQQGLGILGGSLADKFGARP 75 L +G ++MP++ LR + G+ L L L Q + G+L+D+FG RP Sbjct: 15 ALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRP 74 Query: 76 LIVGGMLLRAAGFASLAYAQSGLELILSCVISGLGGCLFDPPRAALVIKFTRPRQRGRYI 135 +++ + A +A +A A L + +++G+ G A + T +R R+ Sbjct: 75 VLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVA-GAYIADITDGDERARHF 133 Query: 136 SLLMMLESAGAVVGALLGSWLLNFDFEYVCLLGAGLFVCAALCNLLILPAYKLSVRPTPI 195 + G V G +LG + F A L L +LP R P+ Sbjct: 134 GFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGER-RPL 192 Query: 196 RAGLGQVLADKAFCRLVLILSGYYALWVQVMLI-------FPILVKQMAG-TTTAVGWMY 247 R LA + R + +++ A++ + L+ + I + T +G Sbjct: 193 RREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISL 252 Query: 248 T---LETAISLALLYP--LARYGERHFKLESRLMAGVLLMTTGIGLVAFANTLPAVFMLL 302 + +++ A++ AR GER LM G++ TG L+AFA F ++ Sbjct: 253 AAFGILHSLAQAMITGPVAARLGERRA-----LMLGMIADGTGYILLAFATRGWMAFPIM 307 Query: 303 ACFYLGIVIAEPARETLMTKLAQPGARGSYMGFSRLGLALGGMTGYVGGGALHDYAMLQG 362 G I PA + ++++ +G G +L + G + A++ ++ Sbjct: 308 VLLASG-GIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAASITTW 366 Query: 363 QPWLPWLV 370 W W+ Sbjct: 367 NGWA-WIA 373
>THERMOLYSIN#Thermolysin metalloprotease (M4) family signature. Length = 544 Score = 368 bits (946), Expect = e-123 Identities = 131/464 (28%), Positives = 193/464 (41%), Gaps = 55/464 (11%) Query: 61 GQQRVRYEQTWHGIPVWGQVLVAEQSLGGQISQVSGQILRQIDADVASPTAALS--PADA 118 G +R+EQ G VLVA + G++S +SG ++ +D AA+S A+ Sbjct: 87 GHTVMRFEQAIAASLCMGAVLVAHVN-DGELSSLSGTLIPNLDKRTLKTEAAISIQQAEM 145 Query: 119 ASKARAGAKGSNERVK-------LFVMQDEAGQARLVYLVSWLAASDEPSRPFVVIDAQN 171 +K + + ER V+ + RL Y V+ + P +IDA + Sbjct: 146 IAKQDVADRVTKERPAAEEGKPTRLVIYPDEETPRLAYEVNVRFLTPVPGNWIYMIDAAD 205 Query: 172 GSELKRWEGINH--KDATGPGGNVKTGKYFYG--ADFGPLLVDDNCRMTSPNVDTLNMNH 227 G L +W ++ P T G D + S + Sbjct: 206 GKVLNKWNQMDEAKPGGAQPVAGTSTVGVGRGVLGDQKYI-----NTTYSSYYGYYYLQD 260 Query: 228 ATTGGAI------HQFTCPENTVKEINGAY-----SPLNDAHYFGNVVFDMYRNWYN--- 273 T G I ++ P + + + + + DAHY+ VV+D Y+N + Sbjct: 261 NTRGSGIFTYDGRNRTVLPGSLWADGDNQFFASYDAAAVDAHYYAGVVYDYYKNVHGRLS 320 Query: 274 TAPLTFKLKMRVHYSRNYENAFWDGSQMTFGDG-ATTFYPLV-SLDVAAHEVSHGFTEQN 331 ++ VHY R Y NAFW+GSQM +GDG TF P +DV HE++H T+ Sbjct: 321 YDGSNAAIRSTVHYGRGYNNAFWNGSQMVYGDGDGQTFLPFSGGIDVVGHELTHAVTDYT 380 Query: 332 SGLVYSGQSGGINEAFSDMAGEAAENFMKGSNDWLVGAQIFK---GNGSLRYFEDPTRDG 388 +GLVY +SG INEA SD+ G E + + DW +G I+ +LR DP + G Sbjct: 381 AGLVYQNESGAINEAMSDIFGTLVEFYANRNPDWEIGEDIYTPGVAGDALRSMSDPAKYG 440 Query: 389 SSIGHASDYYDGID----VHHSSGVYNRAFYLLANT--------SGWNTRKAFEVFVLAN 436 H S Y G VH +SG+ N+A YLL+ +G K ++F A Sbjct: 441 DPD-HYSKRYTGTQDNGGVHTNSGIINKAAYLLSQGGVHYGVSVTGIGRDKMGKIFYRAL 499 Query: 437 RLYWGANTTFDQGACGVTKAATDLGYS----VTDVAAAFTTVGV 476 Y + F Q +AA DL S V V AF VGV Sbjct: 500 VYYLTPTSNFSQLRAACVQAAADLYGSTSQEVNSVKQAFNAVGV 543
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 60.7 bits (147), Expect = 3e-12 Identities = 38/190 (20%), Positives = 72/190 (37%), Gaps = 6/190 (3%) Query: 1 MILLLVLLVLFSPLAIDIYLPAIPQMAEQLGAEVTLMQGTITWFLFSMGLGQLLVGPLAD 60 +++ L +L FS L + ++P +A T F+ + +G + G L+D Sbjct: 15 ILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSD 74 Query: 61 RYGRKPIALGGVLLYGLSALGAGFAASLGE-LMLARVLQGFGACATSVAAFSVVRDSYGP 119 + G K + L G+++ ++ S L++AR +QG GA A VV Sbjct: 75 QLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPK 134 Query: 120 KKSGQMISYLNGAICFIPALAPLLGGWLTAKAGWSANFWFMAGYAVIVGSWLLWRMPETR 179 + G+ + + + P +GG + WS I+ L ++ Sbjct: 135 ENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPM--ITIITVPFLMKLL--- 189 Query: 180 PEETSSSGPL 189 +E G Sbjct: 190 KKEVRIKGHF 199
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 34.7 bits (79), Expect = 2e-04 Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 7/77 (9%) Query: 87 RERLPQVQKELEEAKARL-----LNLNGDNEKRFT--EKDGKIAEQSKEIASLKAQLASQ 139 RE QV+K LEEA ++L LN + K+ T EK A+ E +LK +LA Q Sbjct: 392 REAKKQVEKALEEANSKLAALEKLNKELEESKKLTEKEKAELQAKLEAEAKALKEKLAKQ 451 Query: 140 SEEMGNLKEQNDALTQS 156 +EE+ L+ + +Q+ Sbjct: 452 AEELAKLRAGKASDSQT 468
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 30.2 bits (68), Expect = 0.022 Identities = 10/61 (16%), Positives = 21/61 (34%), Gaps = 4/61 (6%) Query: 477 QAALTGLLAEAGVLAQELKRQRNLFERHQQHLFIGRHWLQQVEDSFFVLNRDLDQLRSDL 536 A + + V L +L + I +H + + E+ + +L +S L Sbjct: 220 LARINRYENLSRVEKSRLDDFSSLLHKQ----AIAKHAVLEQENKYVEAVNELRVYKSQL 275 Query: 537 S 537 Sbjct: 276 E 276
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 37.2 bits (86), Expect = 6e-06 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 1/74 (1%) Query: 68 NICVHPDFQGKGLGRALLREYLTRSKANKAEAWFLEVRAGNSTAISLYESEGFA-EYCRR 126 +I V D++ KG+G ALL + + +K N LE + N +A Y F Sbjct: 94 DIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFIIGAVDT 153 Query: 127 ADYYGTGQDREDAV 140 Y E A+ Sbjct: 154 MLYSNFPTANEIAI 167
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 28.1 bits (62), Expect = 0.023 Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%) Query: 73 LDTSLWQSAEMAPVLARLVKVRLNPDAG 100 L ++LW AE + RL ++RLNPDAG Sbjct: 621 LASTLWY-AESNALSKRLGELRLNPDAG 647
>LUXSPROTEIN#Bacterial autoinducer-2 (AI-2) production protein LuxS signature. Length = 171 Score = 274 bits (703), Expect = 3e-98 Identities = 128/168 (76%), Positives = 144/168 (85%) Query: 2 PLLDSFTVDHTRMAAPAVRVAKTMQTPNKDTITVFDLRFCVPNQEILSERGIHTLEHLFA 61 PLLDSFTVDHTRM APAVRVAKTMQTP DTITVFDLRF PN++ILSE+GIHTLEHL+A Sbjct: 1 PLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYA 60 Query: 62 GFMRDHLNGNGVEIIDISPMGCRTGFYMSLIGAPDEARVGAAWQAAMSDVLTVQEQGKIP 121 GFMR+HLNG+ VEIIDISPMGCRTGFYMSLIG P E +V AW AAM DVL V+ Q KIP Sbjct: 61 GFMRNHLNGDSVEIIDISPMGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVENQNKIP 120 Query: 122 ELNEYQCGTYSMHSLEEAHAIARHVLERGIGVNRNDELALPEEKLKSL 169 ELNEYQCGT +MHSL+EA IA+++LE G+ VN+NDELALPE L+ L Sbjct: 121 ELNEYQCGTAAMHSLDEAKQIAKNILEVGVAVNKNDELALPESMLREL 168
>PHPHLIPASEA1#Bacterial phospholipase A1 protein signature. Length = 289 Score = 29.9 bits (67), Expect = 0.007 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%) Query: 127 SDRDDFADAIDFMGWYTHKAQRLNGTSKWDAYGQYLNYHEGWGGYRRG-SYR 177 + DD D +MG+Y K G + A GQY N++ G+GG G SY Sbjct: 200 GNTDDNPDITKYMGYYQLKIGYHLGDAVLSAKGQY-NWNTGYGGAELGLSYP 250
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 34.5 bits (79), Expect = 8e-05 Identities = 11/55 (20%), Positives = 27/55 (49%), Gaps = 1/55 (1%) Query: 4 RSGFSLIELMVTVALISILLTLGVPSFSAILRNMTLTSQANNFVAAINLARSEAI 58 + GF+L+E+M+ + L+ + + + +F A + + A F A + + + Sbjct: 3 QRGFTLLEMMLILLLMGVSAGMVLLAFPASRDDSAAQTLA-RFEAQLRFVQQRGL 56
>INFPOTNTIATR#Macrophage infectivity potentiator signature. Length = 233 Score = 26.5 bits (58), Expect = 0.040 Identities = 12/34 (35%), Positives = 17/34 (50%) Query: 6 AADSSVLFHFAIKLEDGSVADSTALQGKPARLRM 39 +V + L DG+V DST GKPA ++ Sbjct: 142 GKSDTVTVEYTGTLIDGTVFDSTEKAGKPATFQV 175
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 32.2 bits (73), Expect = 6e-04 Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 3/49 (6%) Query: 1 MIRSQRQAGFTLLEMLVAIAIFAGLSLGAYQVLQGVLTSDEVAKRKEAR 49 M + +Q GFTLLE++V I I + + A V+ ++ + E A +++A Sbjct: 1 MRATDKQRGFTLLEIMVVIVI---IGVLASLVVPNLMGNKEKADKQKAV 46
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 28.4 bits (63), Expect = 0.005 Identities = 10/28 (35%), Positives = 16/28 (57%) Query: 1 MNARGMTLLEVMVALAVFAIAGLAVMKT 28 M RG TLLE+M+ L + ++ V+ Sbjct: 1 MRQRGFTLLEMMLILLLMGVSAGMVLLA 28
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 135 bits (341), Expect = 6e-43 Identities = 50/163 (30%), Positives = 74/163 (45%), Gaps = 27/163 (16%) Query: 5 RQAGFTLLEVLLVAMLMGLVATAVTLSMGGARGDRELDKQARRFMAVLQQAQEYSVMDGR 64 RQ GFTLLE++L+ +LMG+ A V L+ +R D AR F A L+ Q+ + G+ Sbjct: 2 RQRGFTLLEMMLILLLMGVSAGMVLLAFPASRDDSAAQTLAR-FEAQLRFVQQRGLQTGQ 60 Query: 65 LVGLRVEDNSWQFMQRAAKD-------------RKWQVMSGDKLLDRVELPDNMRLAIEL 111 G+ V + WQF+ A+D +W + ++ + Sbjct: 61 FFGVSVHPDRWQFLVLEARDGADPAPADDGWSGYRWLPLRAGRVATSGSIAGGKLNLAFA 120 Query: 112 EGFSWRTESDEKYEKGRDEKERTPQVFIFPGGELTPFVLTLTQ 154 +G +W T D P V IFPGGE+TPF LTL + Sbjct: 121 QGEAW-TPGDN------------PDVLIFPGGEMTPFRLTLGE 150
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 240 bits (614), Expect = 2e-85 Identities = 95/136 (69%), Positives = 111/136 (81%) Query: 4 RRQSGFTLLEVMVVIVILGILASLVVPNLMGNKEKADQQKAVSDIVALENALDMYKLDNN 63 +Q GFTLLE+MVVIVI+G+LASLVVPNLMGNKEKAD+QKAVSDIVALENALDMYKLDN+ Sbjct: 5 DKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKLDNH 64 Query: 64 RYPTTEQGLDALVNKPTAAPEPRSYREGGYIKRLPQDPWGNPYQMLSPGQFGKIDIFSMG 123 YPTT QGL++LV PT P +Y + GYIKRLP DPWGN Y +++PG+ G D+ S G Sbjct: 65 HYPTTNQGLESLVEAPTLPPLAANYNKEGYIKRLPADPWGNDYVLVNPGEHGAYDLLSAG 124 Query: 124 LDGEAGTDDDIGNWNL 139 DGE GT+DDI NW L Sbjct: 125 PDGEMGTEDDITNWGL 140
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 579 bits (1495), Expect = 0.0 Identities = 249/407 (61%), Positives = 321/407 (78%), Gaps = 2/407 (0%) Query: 1 MAAFEYKALDGKGRNKSGVLEGDSARQVRQLLREQGLTPLEVNETTEKAKREANRFVLFR 60 MA + Y+ALD +G+ G E DSARQ RQLLRE+GL PL V+E ++ + + R Sbjct: 1 MAQYHYQALDAQGKKCRGTQEADSARQARQLLRERGLVPLSVDENRGDQQKSGSTGLSLR 60 Query: 61 RGA--STAELAMITRQLATLVGAGLTIEEALKAVAEQCEKAHLRSMVATVRSKVVEGYSL 118 R ST++LA++TRQLATLV A + +EEAL AVA+Q EK HL ++A VRSKV+EG+SL Sbjct: 61 RKIRLSTSDLALLTRQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSL 120 Query: 119 ADSLAAFPHVFDQLFRSMVAAGEKSGHLEKVLNRLADYTEQRQHMRTKLLQAMIYPIVLT 178 AD++ FP F++L+ +MVAAGE SGHL+ VLNRLADYTEQRQ MR+++ QAMIYP VLT Sbjct: 121 ADAMKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVLT 180 Query: 179 CVAIGVISILLTAVVPKVVAQFEHMGQQLPATTRFLIGTSELMQHYGLWFLLLLLVGGFV 238 VAI V+SILL+ VVPKVV QF HM Q LP +TR L+G S+ ++ +G W LL LL G Sbjct: 181 VVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLALLAGFMA 240 Query: 239 WRWWLTDDKRRRHWHQLILRLPVIGRVSRGLNTARFARTLSILNASAVPLLEGMKISGEV 298 +R L +KRR +H+ +L LP+IGR++RGLNTAR+ARTLSILNASAVPLL+ M+ISG+V Sbjct: 241 FRVMLRQEKRRVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAMRISGDV 300 Query: 299 LSNDFARMRIGEATERVREGTSLRKSLDETKIFPPMMLHMIASGEQSGELDNMLERAADN 358 +SND+AR R+ AT+ VREG SL K+L++T +FPPMM HMIASGE+SGELD+MLERAADN Sbjct: 301 MSNDYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMIASGERSGELDSMLERAADN 360 Query: 359 QDREFETQVNIALGVFEPMLVVSMAGVVLFIVMSILQPILELNNMVN 405 QDREF +Q+ +ALG+FEP+LVVSMA VVLFIV++ILQPIL+LN +++ Sbjct: 361 QDREFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPILQLNTLMS 407
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 770 bits (1990), Expect = 0.0 Identities = 389/657 (59%), Positives = 489/657 (74%), Gaps = 12/657 (1%) Query: 3 NKGKGWRLATVAAALMMAGSAWATEYSASFKNADIEEFINTVGKNLNKTIIIEPSVRGKI 62 N + + L + A ++ A A E+SASFK DI+EFINTV KNLNKT+II+PSVRG I Sbjct: 5 NVIRSFSLTLLIFAALLFRPAAAEEFSASFKGTDIQEFINTVSKNLNKTVIIDPSVRGTI 64 Query: 63 NVRSYDLLNEDQYYQFFLSVLDVYGFAVVPMDNGVLKVVRSKDAKTSAIPVVDESNPGSG 122 VRSYD+LNE+QYYQFFLSVLDVYGFAV+ M+NGVLKVVRSKDAKT+A+PV ++ PG G Sbjct: 65 TVRSYDMLNEEQYYQFFLSVLDVYGFAVINMNNGVLKVVRSKDAKTAAVPVASDAAPGIG 124 Query: 123 DEMVTRVVPVRNVSVRELAPLLRQLNDNAGGGNVVHYDPSNVLLITGRAAVVNRLVEVVR 182 DE+VTRVVP+ NV+ R+LAPLLRQLNDNAG G+VVHY+PSNVLL+TGRAAV+ RL+ +V Sbjct: 125 DEVVTRVVPLTNVAARDLAPLLRQLNDNAGVGSVVHYEPSNVLLMTGRAAVIKRLLTIVE 184 Query: 183 RVDKAGDQEVDIVKLKYASAGEMVRLVTNLNKDGNNQGGNTSLLLAPKVVADERTNSVVV 242 RVD AGD+ V V L +ASA ++V+LVT LNKD + S++ VVADERTN+V+V Sbjct: 185 RVDNAGDRSVVTVPLSWASAADVVKLVTELNKDTSKSALPGSMV--ANVVADERTNAVLV 242 Query: 243 SGEPKARARIIQMVHQLDRDLQSQGNTRVFYLKYGKAKDLVEVLKGVSSSIEADKKGGAA 302 SGEP +R RII M+ QLDR +QGNT+V YLKY KA DLVEVL G+SS+++++K+ Sbjct: 243 SGEPNSRQRIIAMIKQLDRQQATQGNTKVIYLKYAKASDLVEVLTGISSTMQSEKQ---- 298 Query: 303 TTTGGGGASIGGGKLAISADETTNALVITAQPDVMAELEQVVAKLDIRRAQVLVEAIIVE 362 + + I A TNAL++TA PDVM +LE+V+A+LDIRR QVLVEAII E Sbjct: 299 ---AAKPVAALDKNIIIKAHGQTNALIVTAAPDVMNDLERVIAQLDIRRPQVLVEAIIAE 355 Query: 363 IADGDGLNLGVQWANTNGGGTQFTDTNLPIGSVAIAAKDYQKNGT-TTGLAALAKDFNGM 421 + D DGLNLG+QWAN N G TQFT++ LPI + A Y K+GT ++ LA+ FNG+ Sbjct: 356 VQDADGLNLGIQWANKNAGMTQFTNSGLPISTAIAGANQYNKDGTVSSSLASALSSFNGI 415 Query: 422 AAGFYKGNWAALVTALSTNTKNDILSTPSIVTMDNKEASFNVGQEVPVQSGSQSSTTSDQ 481 AAGFY+GNWA L+TALS++TKNDIL+TPSIVT+DN EA+FNVGQEVPV +GSQ +T+ D Sbjct: 416 AAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMEATFNVGQEVPVLTGSQ-TTSGDN 474 Query: 482 VFNTIERKTVGTKLVVTPQINEGDSVLLNIEQEVSSVAQTQAPGTSTLGPTFDTRTIKNA 541 +FNT+ERKTVG KL V PQINEGDSVLL IEQEVSSVA + +S LG TF+TRT+ NA Sbjct: 475 IFNTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSTSSDLGATFNTRTVNNA 534 Query: 542 VLVKSGETVVLGGLMDEKTQEKVSKVPLLGDIPVLGYLFRSTSNSTSKRNLMVFIRPTIL 601 VLV SGETVV+GGL+D+ + KVPLLGDIPV+G LFRSTS SKRNLM+FIRPT++ Sbjct: 535 VLVGSGETVVVGGLLDKSVSDTADKVPLLGDIPVIGALFRSTSKKVSKRNLMLFIRPTVI 594 Query: 602 RDADVYSGISSNKYSQFRSEQQEAAAQEGYLTSPKRQVLPQYGQGVTMS-PEVQKQL 657 RD D Y SS +Y+ F Q + +E + +L Y + T + +V + Sbjct: 595 RDRDEYRQASSGQYTAFNDAQSKQRGKENNDAMLNQDLLEIYPRQDTAAFRQVSAAI 651
>BCTERIALGSPC#Bacterial general secretion pathway protein C signature. Length = 272 Score = 343 bits (882), Expect = e-121 Identities = 95/269 (35%), Positives = 140/269 (52%), Gaps = 14/269 (5%) Query: 38 PLSRFSQPLFWLLLLLLAHQCAGLTWRL-LDLGSRPVSQSWQPSVVANQSQGANRLDLSG 96 + R LF+LL+LL Q A + WR+ L + S P+ Q N L G Sbjct: 13 VIRRI---LFYLLMLLFCQQLAMIFWRIGLPDNAPVSSVQITPAQARQQPVTLNDFTLFG 69 Query: 97 VSRLALFGKAKQQAQAADVVAADAPKTQLNAQLNGVLASSDPAKSIAIIAHNGLQNSYGI 156 VS + + ++ P + LN L GV+A D ++SIAII+ + Q S G+ Sbjct: 70 VSP-----EKNKAGALDASQMSNLPPSTLNLSLTGVMAGDDDSRSIAIISKDNEQFSRGV 124 Query: 157 GDLIDGTQAKIRQVFPDRVIIERDGRDETLMLDGEEYGKPLPKPGNQDGKLSSVRNELMG 216 + + G AKI + PDRV+++ GR E L L +E PG Q + R Sbjct: 125 NEEVPGYNAKIVSIRPDRVVLQYQGRYEVLGLYSQEDSGSDGVPGAQVNEQLQQR----- 179 Query: 217 NPGKITDYLNISPVRVDGRMVGYRLNPGSNPELFNQLGLVANDMAVSINGLDLRDNAQAM 276 ++DY++ SP+ D ++ GYRLNPG + F ++GL NDMAV++NGLDLRD QA Sbjct: 180 ASTTMSDYVSFSPIMNDNKLQGYRLNPGPKSDSFYRVGLQDNDMAVALNGLDLRDAEQAK 239 Query: 277 QAMQQVAGATEMTVTVERQGQLYDVYVGL 305 +AM+++A T+TVER GQ D+Y+ Sbjct: 240 KAMERMADVHNFTLTVERDGQRQDIYMEF 268
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 29.9 bits (67), Expect = 0.032 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 17/84 (20%) Query: 464 FYTLGPLTTDIAPGYDHFT---SGIGAAMIGWYGCAMLCYVTPKEHLGLPNKEDVKQGLI 520 F +LG + T +AP YD+F + + ++ G V P + L V Q Sbjct: 161 FASLGMVVTALAPSYDYFIFYQTLVITPILFLSGA-----VFPVDQL-----PIVFQTAA 210 Query: 521 TYKIAAHAADLAK----GHPGAQI 540 + +H+ DL + GHP + Sbjct: 211 RFLPLSHSIDLIRPIMLGHPVVDV 234
>AEROLYSIN#Aerolysin signature. Length = 493 Score = 976 bits (2523), Expect = 0.0 Identities = 481/493 (97%), Positives = 488/493 (98%) Query: 1 MQKLKITGLSLIISGLLMAQAHAAEPVYPDQLRLFSLGQEVCGDKYRPITREEAQSVKSN 60 MQK+K+TGLSLIISGLLMAQA AAEPVYPDQLRLFSLGQ VCGDKYRP+ REEAQSVKSN Sbjct: 1 MQKIKLTGLSLIISGLLMAQAQAAEPVYPDQLRLFSLGQGVCGDKYRPVNREEAQSVKSN 60 Query: 61 IVNMMGQWQISGLANGWVIMGPGYNGEIKPGTASNTWCYPTNPVTGEIPTLSALDIPDGD 120 IV MMGQWQISGLANGWVIMGPGYNGEIKPGTASNTWCYPTNPVTGEIPTLSALDIPDGD Sbjct: 61 IVGMMGQWQISGLANGWVIMGPGYNGEIKPGTASNTWCYPTNPVTGEIPTLSALDIPDGD 120 Query: 121 EVDVQWRLVHDSANFIKPTSYLAHYLGYAWVGGNHSQYVGEDMDVTRDGDGWVIRGNNDG 180 EVDVQWRLVHDSANFIKPTSYLAHYLGYAWVGGNHSQYVGEDMDVTRDGDGWVIRGNNDG Sbjct: 121 EVDVQWRLVHDSANFIKPTSYLAHYLGYAWVGGNHSQYVGEDMDVTRDGDGWVIRGNNDG 180 Query: 181 GCEGYRCGEKTAIKVSNFAYNLDPDSFKHGDVTQSDRQLVKTVVGWAINDSDTPQSGYDV 240 GC+GYRCG+KTAIKVSNFAYNLDPDSFKHGDVTQSDRQLVKTVVGWA+NDSDTPQSGYDV Sbjct: 181 GCDGYRCGDKTAIKVSNFAYNLDPDSFKHGDVTQSDRQLVKTVVGWAVNDSDTPQSGYDV 240 Query: 241 TLRYDTATNWSKTNTYGLSEKVTTKNKFKWPLVGETELSIEIAANQSWASQNGGSTTTSL 300 TLRYDTATNWSKTNTYGLSEKVTTKNKFKWPLVGETELSIEIAANQSWASQNGGSTTTSL Sbjct: 241 TLRYDTATNWSKTNTYGLSEKVTTKNKFKWPLVGETELSIEIAANQSWASQNGGSTTTSL 300 Query: 301 SQSVRPTVPARSKIPVKIELYKADISYPYEFKADVSYDLTLSGFLRWGGNAWYTHPDNRP 360 SQSVRPTVPARSKIPVKIELYKADISYPYEFKADVSYDLTLSGFLRWGGNAWYTHPDNRP Sbjct: 301 SQSVRPTVPARSKIPVKIELYKADISYPYEFKADVSYDLTLSGFLRWGGNAWYTHPDNRP 360 Query: 361 NWNHTFVIGPYKDKASSIRYQWDKRYIPGEVKWWDWNWTIQQNGLSTMQNNLARVLRPVR 420 NWNHTFVIGPYKDKASSIRYQWDKRYIPGEVKWWDWNWTIQQNGLSTMQNNLARVLRPVR Sbjct: 361 NWNHTFVIGPYKDKASSIRYQWDKRYIPGEVKWWDWNWTIQQNGLSTMQNNLARVLRPVR 420 Query: 421 AGITGDFSAESQFAGNIEIGAPVPLAADSKVRRTRSVDGAGQGLRLEIPLDAQELSGLGF 480 AGITGDFSAESQFAGNIEIGAPVPLAADSKVRR RSVDGAGQGLRLEIPLDAQELSGLGF Sbjct: 421 AGITGDFSAESQFAGNIEIGAPVPLAADSKVRRARSVDGAGQGLRLEIPLDAQELSGLGF 480 Query: 481 SNVSLSVTPAANQ 493 +NVSLSVTPAANQ Sbjct: 481 NNVSLSVTPAANQ 493
>BCTERIALGSPC#Bacterial general secretion pathway protein C signature. Length = 272 Score = 27.2 bits (60), Expect = 0.027 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 4/60 (6%) Query: 46 NAALSGV-AGNDELRPGMRLAILSRDGVAERIGMADAIAGFLPTSQWRRAEASLLAVTGR 104 N +L+GV AG+D +AI+S+D G+ + + G+ R + +L GR Sbjct: 94 NLSLTGVMAGDD---DSRSIAIISKDNEQFSRGVNEEVPGYNAKIVSIRPDRVVLQYQGR 150
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 91.4 bits (227), Expect = 4e-22 Identities = 31/129 (24%), Positives = 60/129 (46%), Gaps = 1/129 (0%) Query: 200 QSMKILVVEDNPQVAETIMDYLELAGHRLDCAYHGQAALQLLAEQRFDVIIMDVMMPRLD 259 ILV +D+ + + L AG+ + + + +A D+++ DV+MP + Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 260 GLSTVARLREQGIPTPVLFLTARDSLDDKLAGFKAGGDDYLVKPFAMEELEVRLQALALR 319 + R+++ PVL ++A+++ + + G DYL KPF + EL + + AL Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTEL-IGIIGRALA 120 Query: 320 GPRSDMGAL 328 P+ L Sbjct: 121 EPKRRPSKL 129
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 31.0 bits (70), Expect = 0.036 Identities = 18/87 (20%), Positives = 37/87 (42%), Gaps = 17/87 (19%) Query: 347 SGLEPLIITPESMFVNVGERTN---VTGSA----KFKRLIKEGLYDEALDVAKQQVESGA 399 +P+ +++ + +TN VT + +R+I + LD+ + QV A Sbjct: 298 QAAKPVAALDKNIIIKAHGQTNALIVTAAPDVMNDLERVIAQ------LDIRRPQVLVEA 351 Query: 400 QIIDINMDEGMLDAEAAMVRFLNLIAG 426 I ++ D L+ +++ N AG Sbjct: 352 IIAEVQ-DADGLNLG---IQWANKNAG 374
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 557 bits (1437), Expect = 0.0 Identities = 311/347 (89%), Positives = 331/347 (95%), Gaps = 1/347 (0%) Query: 1 MFKKLRGVFSNDLSIDLGTANTLIYVKDQGIVLNEPSVVAIRQERGNA-KSVAAVGHAAK 59 M KK RG+FSNDLSIDLGTANTLIYVK QGIVLNEPSVVAIRQ+R + KSVAAVGH AK Sbjct: 1 MLKKFRGMFSNDLSIDLGTANTLIYVKGQGIVLNEPSVVAIRQDRAGSPKSVAAVGHDAK 60 Query: 60 QMLGRTPGNISAIRPMKDGVIADFYVTEKMLQHFIKQVHDNNYFRPSPRVLVCVPCGSTQ 119 QMLGRTPGNI+AIRPMKDGVIADF+VTEKMLQHFIKQVH N++ RPSPRVLVCVP G+TQ Sbjct: 61 QMLGRTPGNIAAIRPMKDGVIADFFVTEKMLQHFIKQVHSNSFMRPSPRVLVCVPVGATQ 120 Query: 120 VERRAIKESALGAGAREVYLIDEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAIISLNG 179 VERRAI+ESA GAGAREV+LI+EPMAAAIGAGLPVSEATGSMVVDIGGGTTEVA+ISLNG Sbjct: 121 VERRAIRESAQGAGAREVFLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNG 180 Query: 180 VVYSQSVRIGGDKFDEAIISYVRRNYGSLIGEATAERIKHEIGSAYPGEEVREIEVRGRN 239 VVYS SVRIGGD+FDEAII+YVRRNYGSLIGEATAERIKHEIGSAYPG+EVREIEVRGRN Sbjct: 181 VVYSSSVRIGGDRFDEAIINYVRRNYGSLIGEATAERIKHEIGSAYPGDEVREIEVRGRN 240 Query: 240 LAEGVPRSFTLNSNEILEALQEPLSGIVSAVMVALEQSPPELASDISERGMVLTGGGALL 299 LAEGVPR FTLNSNEILEALQEPL+GIVSAVMVALEQ PPELASDISERGMVLTGGGALL Sbjct: 241 LAEGVPRGFTLNSNEILEALQEPLTGIVSAVMVALEQCPPELASDISERGMVLTGGGALL 300 Query: 300 KDIDRLLMEETGIPVVVAEDPLTCVARGGGKALELIDMHGGDLFHYE 346 +++DRLLMEETGIPVVVAEDPLTCVARGGGKALE+IDMHGGDLF E Sbjct: 301 RNLDRLLMEETGIPVVVAEDPLTCVARGGGKALEMIDMHGGDLFSEE 347
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 34.5 bits (79), Expect = 1e-04 Identities = 12/51 (23%), Positives = 30/51 (58%), Gaps = 8/51 (15%) Query: 1 MRTASGFTLIELVMVILLLGIMATFASQFIGIGTQIYG--DASSREQLMSD 49 GFTL+E+++VI+++G++A+ + + G + + +++ +SD Sbjct: 4 TDKQRGFTLLEIMVVIVIIGVLASL------VVPNLMGNKEKADKQKAVSD 48
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 31.4 bits (71), Expect = 0.001 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 6/66 (9%) Query: 1 MRA--PERGFTLIELIVGIVLLAVALTGILGLLINQAPQAVDPVQQVRAAQLAQRLAGEI 58 MRA +RGFTL+E++V IV++ V + ++ L+ +A +Q + + L + Sbjct: 1 MRATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKA---DKQKAVSDI-VALENAL 56 Query: 59 QQTSFD 64 D Sbjct: 57 DMYKLD 62
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 48.0 bits (114), Expect = 1e-09 Identities = 15/29 (51%), Positives = 26/29 (89%) Query: 2 RRGFTLIELVIVILLLGILAAFAVPKLLG 30 +RGFTL+E+++VI+++G+LA+ VP L+G Sbjct: 7 QRGFTLLEIMVVIVIIGVLASLVVPNLMG 35
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 40.3 bits (94), Expect = 1e-06 Identities = 14/40 (35%), Positives = 26/40 (65%) Query: 18 RAAGFSLIELVIVIVILGILAVTALPRFLDVTDEAKKASV 57 + GF+L+E+++VIVI+G+LA +P + ++A K Sbjct: 6 KQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKA 45
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 267 bits (683), Expect = 4e-88 Identities = 113/403 (28%), Positives = 198/403 (49%), Gaps = 3/403 (0%) Query: 1 MSSFAYKGRDSQGNAVSGVVDAANEMAAAEQLMRRGVMPTELKPGKAKAA-ALDWSLLLE 59 M+ + Y+ D+QG G +A + A + L RG++P + + + L L Sbjct: 1 MAQYHYQALDAQGKKCRGTQEADSARQARQLLRERGLVPLSVDENRGDQQKSGSTGLSLR 60 Query: 60 RGVRLD--ELVVFSRQMYALTRAGIPILRAIAGLEESAHSKPLKRALHALGEDLGNGRPL 117 R +RL +L + +RQ+ L A +P+ A+ + + + L + + A+ + G L Sbjct: 61 RKIRLSTSDLALLTRQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSL 120 Query: 118 SSSMQAHPRVFSSLFVAIIHVGENTGQLEEAFLQLANYFELELETRKRIKTAMRYPSFVL 177 + +M+ P F L+ A++ GE +G L+ +LA+Y E + R RI+ AM YP + Sbjct: 121 ADAMKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVLT 180 Query: 178 IAIGIAMVILNIMVIPVFAGMFAKFGVELPLATRILLATSHFFVHYWWVMLGVLLAMVFG 237 + + IL +V+P F LPL+TR+L+ S + ML LLA Sbjct: 181 VVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLALLAGFMA 240 Query: 238 WRRWVSTVKGKLTWHRWQLKLPIVGTIIERSLLARFARSFSMMLKAGVPLNTALSLVADA 297 +R + K ++++HR L LP++G I AR+AR+ S++ + VPL A+ + D Sbjct: 241 FRVMLRQEKRRVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAMRISGDV 300 Query: 298 VDNAWMAGRIRDMRAGIERGESLLRTAGSSGLFTPLVMQMIAVGEETGQVDDLLHEAAEY 357 + N + R+ + G SL + + LF P++ MIA GE +G++D +L AA+ Sbjct: 301 MSNDYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMIASGERSGELDSMLERAADN 360 Query: 358 YEREVDYDLKSLTARIEPILIGIVAVMVLILALGIFTPMWDMM 400 +RE + EP+L+ +A +VL + L I P+ + Sbjct: 361 QDREFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPILQLN 403
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 36.2 bits (83), Expect = 2e-04 Identities = 21/143 (14%), Positives = 49/143 (34%), Gaps = 13/143 (9%) Query: 22 YWQQSQRVVEARQLQAAGEPTPDAIARAVPAAVPASAEQEPVDQVVALPTPRHLATSPTA 81 ++ + V+ + TP+ I VP+ + E VD+ P P +P+ Sbjct: 984 EVEKRNQTVDTTNIT-----TPNNIQADVPSVPSNNEEIARVDE---APVPPPAPATPSE 1035 Query: 82 EPQQAEERTADDADVAAIDEEGPSDEELQPDLYAELAAEQEAPAAAPRKPGVLKIETVNL 141 + E + ++ +E+ ++ Q A+ EA + ++ Sbjct: 1036 TTETVAENSKQESKTVEKNEQDATETTAQNREVAK-----EAKSNVKANTQTNEVAQSGS 1090 Query: 142 SEAELATLAERKATTAMAKGQLR 164 E T ++ T + + + Sbjct: 1091 ETKETQTTETKETATVEKEEKAK 1113
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 180 bits (459), Expect = 1e-51 Identities = 74/308 (24%), Positives = 131/308 (42%), Gaps = 25/308 (8%) Query: 235 IGSGDGRAVITS-PQAGLVTIRAYPKELKAVREFLNQSESHLKRQVVLEARILEVALNEG 293 + + D +I + Q + + A P + + + Q + + QV++EA I EV +G Sbjct: 303 VAALDKNIIIKAHGQTNALIVTAAPDVMNDLERVIAQLDIR-RPQVLVEAIIAEVQDADG 361 Query: 294 YEQGVDWSGLSA--SWDGNKGITGGGSLTPSTIANTPNQIFSALG------GGAGFKISD 345 G+ W+ +A + N G+ ++ + N + S+L G Sbjct: 362 LNLGIQWANKNAGMTQFTNSGLPISTAIAGANQYNKDGTVSSSLASALSSFNGIAAGFYQ 421 Query: 346 GNFNVAVNLLKTQGDVNTLSSPRVTATNNQKAVIKVGTDEYFVTNASTTTTTSGTSAPIV 405 GN+ + + L + + L++P + +N +A VG + +T S TT+ + Sbjct: 422 GNWAMLLTALSSSTKNDILATPSIVTLDNMEATFNVGQEVPVLT-GSQTTSGDNIFNTVE 480 Query: 406 TPNVELTPFFSGIALDVTPQIDEEGKVLLHIHPSVIDTEEQKKTIDVGTADPLILPLAKS 465 V GI L V PQI+E VLL I V + + A Sbjct: 481 RKTV-------GIKLKVKPQINEGDSVLLEIEQEVSSVADAASSTSSDL-------GATF 526 Query: 466 SIRESDTVVQANNGDIIVIGGLMKTDKQEIVSKVPLLGDIPWVGEAFTNRRESTKKVELV 525 + R + V +G+ +V+GGL+ + KVPLLGDIP +G F + + K L+ Sbjct: 527 NTRTVNNAVLVGSGETVVVGGLLDKSVSDTADKVPLLGDIPVIGALFRSTSKKVSKRNLM 586 Query: 526 ILLKPTVV 533 + ++PTV+ Sbjct: 587 LFIRPTVI 594
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 37.5 bits (87), Expect = 8e-05 Identities = 30/133 (22%), Positives = 50/133 (37%), Gaps = 2/133 (1%) Query: 268 LYLFAFLFAVAAGTVLGGPIGDRIGRKRVIWISILGVAPFTLLLPHVDLFWTSVLSVIIG 327 L L+A + A + G + DR GR+ V+ +S+ G A ++ W + I+ Sbjct: 49 LALYALMQFACAP--VLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVA 106 Query: 328 LILASAFSAILVYAQELVPGKVGTISGLFFGFAFGMGGIGAALLGQLADATSIETVYQVC 387 I + + Y ++ G F FG G + +LG L S + Sbjct: 107 GITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAA 166 Query: 388 AYLPLIGLLTAFL 400 A L + LT Sbjct: 167 AALNGLNFLTGCF 179
>PF07132#Harpin protein (HrpN) Length = 356 Score = 31.6 bits (71), Expect = 3e-04 Identities = 22/51 (43%), Positives = 27/51 (52%) Query: 40 ARMGAATGSVLGGVGTVVGALAGALGGAVLGGLMGGGLGWWLGRTLDRRLS 90 + MG G LGG+G+ +G L G L G LGG +G LG LG L L Sbjct: 63 SMMGGGLGGGLGGLGSSLGGLGGGLLGGGLGGGLGSSLGSGLGSALGGGLG 113 Score = 28.9 bits (64), Expect = 0.003 Identities = 23/48 (47%), Positives = 29/48 (60%) Query: 38 TLARMGAATGSVLGGVGTVVGALAGALGGAVLGGLMGGGLGWWLGRTL 85 T+ MG+ G LGG +G+ G LGG +LGG +GGGLG LG L Sbjct: 57 TMMFMGSMMGGGLGGGLGGLGSSLGGLGGGLLGGGLGGGLGSSLGSGL 104
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 267 bits (684), Expect = 4e-87 Identities = 115/479 (24%), Positives = 194/479 (40%), Gaps = 68/479 (14%) Query: 9 ANVLLVDDDEDVLESYCHLLRLSGYHPRATTSPHEALALLADQWPGVLVSDIYMPAMNGM 68 A +L+ DDD + L +GY R T++ +A ++V+D+ MP N Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 69 DLLASVQALDAEIPVIMITGHGDIPLAVRAVKQGAFDFLEKPLNPQDLLGLLERACRQRS 128 DLL ++ ++PV++++ A++A ++GA+D+L KP + +L+G++ RA + Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 129 AVLARRSEIQATVDDELIGSSPQIVTLRSQLNQLAQTDKDLLLEGPAGSGRHTLARLLHR 188 ++ + + L+G S + + L +L QTD L++ G +G+G+ +AR LH Sbjct: 124 RRPSKLED-DSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHD 182 Query: 189 ISARREQAFQLHDCVSAP-SLAEV-----------------QASLAQAGQGTLVLQSPAR 230 RR F + + P L E QA GTL L Sbjct: 183 YGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIGD 242 Query: 231 LSADCQRWLGNHLLDQE--RKGSKS-----LRAIGLFDESPEALVERQQLMPELYYFLSQ 283 + D Q L L E G ++ +R + ++ + + + +LYY L+ Sbjct: 243 MPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLNV 302 Query: 284 VRLKLPRLVERSCDIIPLFRAFLRQGCKRIGRPVPAVDRAYLETLKRHQWPGNLRELRNV 343 V L+LP L +R+ DI L R F++Q + G V D+ LE +K H WPGN+REL N+ Sbjct: 303 VPLRLPPLRDRAEDIPDLVRHFVQQAE-KEGLDVKRFDQEALELMKAHPWPGNVRELENL 361 Query: 344 AELYAV-----------------------------------GIVKLAGAEQVIPLAS--- 365 I + AS Sbjct: 362 VRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFGD 421 Query: 366 ---GKEPLDDLVEEFERRVIEDTLFLFSGRVTDAAQYLGIPRKKLYLRMKKHQLDKDRF 421 D ++ E E +I L G AA LG+ R L ++++ + R Sbjct: 422 ALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGVSVYRS 480
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 41.0 bits (96), Expect = 7e-06 Identities = 26/118 (22%), Positives = 53/118 (44%), Gaps = 7/118 (5%) Query: 71 IGSAFLFTYAVGKFSNGFLSDYANIGRFMSVSLGLSSICTILMGMNTATFFLVLMWGLNG 130 + +AF+ T+++G G LSD I R + + ++ +++ + + F L++M Sbjct: 54 VNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARF-- 111 Query: 131 WFQSVGSAP----SCVSIFQWFSPKQRGSVYSIWGGSRNIGEGISWILTATIVSYFGW 184 Q G+A V + ++ + RG + + G +GEG+ + I Y W Sbjct: 112 -IQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHW 168
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 60.4 bits (146), Expect = 1e-13 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 1/96 (1%) Query: 21 MNKKERIFDAAHEVLGEQGFHGLSIAVVAKKARVAAGTIYRYFSDKDDLIRQLYRHTILQ 80 ++ I D A + +QG S+ +AK A V G IY +F DK DL +++ + Sbjct: 10 QETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESN 69 Query: 81 CHPLVMEG-VQTEEVSFEQFRRLWLNIHAIFVDEPN 115 L +E + R + +++ V E Sbjct: 70 IGELELEYQAKFPGDPLSVLREILIHVLESTVTEER 105
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 54.8 bits (132), Expect = 2e-10 Identities = 38/190 (20%), Positives = 72/190 (37%), Gaps = 21/190 (11%) Query: 101 DASVEKANLRASMAKLPAAKAKFDRYQNLFTKGSISRDQLDDTEATYRSLEADIESLKST 160 + V K+ L +++ +AK ++ LF D+L T L ++ + Sbjct: 267 ELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEI--LDKLRQTTDNIGLLTLELAKNEER 324 Query: 161 IARREVRAPFAGVVGLRNVF-LGQYLQPGT---DIVRLEDTSVMRLRFTVPQTDISRIRL 216 +RAP + V V G + IV +DT + V DI I + Sbjct: 325 QQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTAL--VQNKDIGFINV 382 Query: 217 NQDILINVDSYPHRQF---KGHISAIEPAV-------NYQSGLIQVQADIPNNDGQ---L 263 Q+ +I V+++P+ ++ G + I + +I ++ + + + L Sbjct: 383 GQNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVIISIEENCLSTGNKNIPL 442 Query: 264 RSGMFARASI 273 SGM A I Sbjct: 443 SSGMAVTAEI 452 Score = 37.9 bits (88), Expect = 5e-05 Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 2/70 (2%) Query: 71 TLSTEQSGTIDSISFESGDTVKPDQLLLSLDASVEKANLRASMAKLPAAKAKFDRYQNLF 130 + ++ + I + G++V+ +LL L A +A+ + + L A+ + RYQ L Sbjct: 98 EIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILS 157 Query: 131 TKGSISRDQL 140 SI ++L Sbjct: 158 R--SIELNKL 165
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 818 bits (2114), Expect = 0.0 Identities = 320/1025 (31%), Positives = 535/1025 (52%), Gaps = 30/1025 (2%) Query: 5 DIFIKRPILAISISFLIALLGVQAVFKMQVREYPEMTNTVVTVSTSYYGASADLIQGFIT 64 + FI+RPI A ++ ++ + G A+ ++ V +YP + V+VS +Y GA A +Q +T Sbjct: 3 NFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVT 62 Query: 65 QPLEQAIAQADNIDFMTS-STQLGSSTITAYMKLNTNPNAALSDILAKVNSVRSQLPKES 123 Q +EQ + DN+ +M+S S GS TIT + T+P+ A + K+ LP+E Sbjct: 63 QVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEV 122 Query: 124 EDPSVTMSTGSTTAVLYIGFTSPELNASQ--ITDYLERVIKPQLFTVGGVSKVDMYGGTK 181 + +++ S++ ++ GF S +Q I+DY+ +K L + GV V ++G + Sbjct: 123 QQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA-Q 181 Query: 182 YALRVWLDPAKMAAFNLTAADVMSVLNSNNYQSATGQATGYFTL------YNGNAETQVN 235 YA+R+WLD + + LT DV++ L N Q A GQ G L + A+T+ Sbjct: 182 YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFK 241 Query: 236 TTEELERLVV-ATRDGKVIRLADIAKVSLEKSHDTYRATANGREAVVLAINAAPTANPIN 294 EE ++ + DG V+RL D+A+V L + A NG+ A L I A AN ++ Sbjct: 242 NPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALD 301 Query: 295 IAHDVLEMLPSLKSNMPSTMEANVLYDSTVAINESISEVIKTIAEAAAIVLVVITLFLGS 354 A + L L+ P M+ YD+T + SI EV+KT+ EA +V +V+ LFL + Sbjct: 302 TAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQN 361 Query: 355 FRAVIIPIITIPLSLIGVVMVMQMFGFSINLMTLLAMVLAIGLVVDDAIVVLENVDRHVK 414 RA +IP I +P+ L+G ++ FG+SIN +T+ MVLAIGL+VDDAIVV+ENV+R + Sbjct: 362 MRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMM 421 Query: 415 EGEEPFRAAII-GTREIAVPVIAMTVTLAAVYAPIALMGGITGSLFKEFALTLAGAVFVS 473 E + P + A +I ++ + + L+AV+ P+A GG TG+++++F++T+ A+ +S Sbjct: 422 EDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALS 481 Query: 474 GIIALTLSPMMCAKMLKAN-----EEPGKFESKVHHLLDRMTVRYDAMLHAVMQKRIVVV 528 ++AL L+P +CA +LK E G F + D Y + ++ + Sbjct: 482 VLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYL 541 Query: 529 LFAVIVFASLPMLFKFIPSELAPNEDKGVMAVLGTAPSNVNLDYIQGTMEQVNKVLDEQP 588 L ++ A + +LF +PS P ED+GV + P+ + Q ++QV + Sbjct: 542 LIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKNE 601 Query: 589 EVAFSQVFS----GVFNANQAFGIA--SMVPWSQREASQKEVLERVGKLVENVPGMSITT 642 + VF+ Q G+A S+ PW +R + + + + + Sbjct: 602 KANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDGF 661 Query: 643 FQFPELP-----GASSGLPIQFVITTPNNFESLYQVASEILT-AAQGSGRFVYSELDLQY 696 +P G ++G + + ++L Q +++L AAQ V + Sbjct: 662 VIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGLE 721 Query: 697 DSATMKIKIDKDKAGAYGITMQDIGITLGTMMSDGYVNRIDLDGRSYEVIPQVERKYRLN 756 D+A K+++D++KA A G+++ DI T+ T + YVN GR ++ Q + K+R+ Sbjct: 722 DTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRML 781 Query: 757 PESIKGYYVRAADGQSIPLGSLISIEVVGEPRALPHFNQLNSATIGAVLMPGTTMGNAIA 816 PE + YVR+A+G+ +P + + V L +N L S I PGT+ G+A+A Sbjct: 782 PEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAMA 841 Query: 817 WLDATASEKLPQGYRYDYMGEARQFVTEGSALYATFALALAIIFLVLAIQFESARDPLVI 876 ++ A KLP G YD+ G + Q G+ A A++ ++FL LA +ES P+ + Sbjct: 842 LMENLA-SKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSV 900 Query: 877 MVSVPLAISGALIALAWGAATMNIYSQVGLITLVGLITKHGILICEVAKEEQLLHGRNRM 936 M+ VPL I G L+A ++Y VGL+T +GL K+ ILI E AK+ G+ + Sbjct: 901 MLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVV 960 Query: 937 EAVMAAAKVRLRPILMTTAAMIAGLIPLLYATGAGAAQRFSIGIVIVAGLAIGTLFTLFV 996 EA + A ++RLRPILMT+ A I G++PL + GAG+ + ++GI ++ G+ TL +F Sbjct: 961 EATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFF 1020 Query: 997 LPVIY 1001 +PV + Sbjct: 1021 VPVFF 1025 Score = 86.4 bits (214), Expect = 4e-19 Identities = 67/317 (21%), Positives = 128/317 (40%), Gaps = 17/317 (5%) Query: 701 MKIKIDKDKAGAYGITMQDIGITLGTMMSDGYVNRID----LDGRSYEVIPQVERKYRLN 756 M+I +D D Y +T D+ L ++ L G+ + +++ N Sbjct: 184 MRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFK-N 242 Query: 757 PESIKGYYVRA-ADGQSIPLGSLISIEVVGEPRA-LPHFNQLNSATIGAVLMPGTTMGNA 814 PE +R +DG + L + +E+ GE + N +A +G L G NA Sbjct: 243 PEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGA---NA 299 Query: 815 IAWLDATASE------KLPQGYRYDYMGEARQFVTEG-SALYATFALALAIIFLVLAIQF 867 + A ++ PQG + Y + FV + T A+ ++FLV+ + Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 868 ESARDPLVIMVSVPLAISGALIALAWGAATMNIYSQVGLITLVGLITKHGILICEVAKEE 927 ++ R L+ ++VP+ + G LA ++N + G++ +GL+ I++ E + Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 928 QLLHGRNRMEAVMAAAKVRLRPILMTTAAMIAGLIPLLYATGAGAAQRFSIGIVIVAGLA 987 + EA + ++ + A IP+ + G+ A I IV+ +A Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 988 IGTLFTLFVLPVIYTYL 1004 + L L + P + L Sbjct: 480 LSVLVALILTPALCATL 496
>PF06580#Sensor histidine kinase Length = 349 Score = 39.1 bits (91), Expect = 5e-05 Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 3/69 (4%) Query: 538 EVDIQCDPKLSIFSFPGSFTQIYSNLILNSINHGFDNWDKPKKITIKVEQQGEELLIDYS 597 + + Q +P + P Q L+ N I HG + KI +K + + ++ Sbjct: 241 QFENQINPAIMDVQVPPMLVQT---LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVE 297 Query: 598 DNGRGIPPE 606 + G Sbjct: 298 NTGSLALKN 306
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 29.8 bits (67), Expect = 0.032 Identities = 8/53 (15%), Positives = 20/53 (37%), Gaps = 2/53 (3%) Query: 463 NNGSAFAGFAAADSWQCIAIGLAMLLGRFGYIIPVLAIAGQLARAPRQERSEG 515 + + G AD ++ G+ +G G + + + + P + +G Sbjct: 406 AGWTIYGGTQLADRYRAFNFGIGKNMGALGAL--SVDMTQANSTLPDDSQHDG 456