>NEISSPPORIN#Neisseria sp. porin signature. Length = 348 Score = 30.7 bits (69), Expect = 0.011 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 1/37 (2%) Query: 179 GTIASMVEQAREVAAKGGKEI-VLTGVNIGDFGKSTG 214 G I + V+ R V GK V TG I DFG G Sbjct: 25 GAIKAGVQTYRSVEHTDGKVSKVETGSEIADFGSKIG 61
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 37.1 bits (86), Expect = 6e-05 Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 6/87 (6%) Query: 131 IPIVNENDTISVTELMFTDNDELSGLIATMMGMDALIILSNIDGIYNGNPADPASTVIRE 190 +P++ E+ I E + D D +A + D +IL++++G +RE Sbjct: 197 VPVILEDGEIKGVEAVI-DKDLAGEKLAEEVNADIFMILTDVNGAAL-YYGTEKEQWLRE 254 Query: 191 IDGGKQDLSEYVQTSKSSFGRGGMLTK 217 + ++L +Y + + F G M K Sbjct: 255 VK--VEELRKYYE--EGHFKAGSMGPK 277
>PF07328#T-DNA border endonuclease VirD1 Length = 144 Score = 30.0 bits (67), Expect = 0.001 Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 7/90 (7%) Query: 5 RNKSGGRPAKNRIDKQKRVVSTKLTELQYYAIKKRAGESGLPISEYVRQAIIST----EV 60 R G R+DK V+S K+TE + + E GL + +R A E Sbjct: 7 REAEDGAAGPARVDK---VISVKMTEAELAEFDAQIAELGLNRNRALRIAARRIGGFVEN 63 Query: 61 TPRLNKQDADSIRKLAGEANNLNQLAHRAN 90 + + D R +AG A N+NQ+A AN Sbjct: 64 DAKTVELLRDMSRAIAGVATNINQIAKAAN 93
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.8 bits (69), Expect = 0.010 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%) Query: 43 SFKVDYGVNLWCDFGTGEGG-SLIDLVMKQHG 73 S KV+ WCDF TGE G L+DL + HG Sbjct: 52 SCKVNVTTGKWCDFSTGESGRDLLDLYAEIHG 83
>PF05272#Virulence-associated E family protein Length = 892 Score = 133 bits (335), Expect = 8e-36 Identities = 64/321 (19%), Positives = 124/321 (38%), Gaps = 39/321 (12%) Query: 89 ANKMHPIREYLTALPLLNPAGHGYIKKLLNTVQ--------VANLGKWEEYFTKWLVGVV 140 N++HP R+++ A ++K L V L + L+G V Sbjct: 529 MNRVHPFRDWVKAQQW---DEVPRLEKWLVHVLGKTPDDYKPRRLRYLQLVGKYILMGHV 585 Query: 141 ANAMNDTGCQNHTCLVLTGDKQGQFKTWWLDNLCPSPLKNYLFTGKI--DPQSKDILTLI 198 A M GC+ +VL G G K+ ++ L F+ KD I Sbjct: 586 ARVME-PGCKFDYSVVLEG-TGGIGKSTLINTLVGL----DFFSDTHFDIGTGKDSYEQI 639 Query: 199 AEYLFINIDDQLKELNKQNENALKNLITTPAVKYRRPYDIYIEEYPHLASFMASVNGNEF 258 A + + ++ + + A+K ++ +YR Y Y++++P + N ++ Sbjct: 640 AGIVAYELS-EMTAFRRADAEAVKAFFSSRKDRYRGAYGRYVQDHPRQVVIWCTTNKRQY 698 Query: 259 LTDPTGNRRFLPFEVL-HIDKSTAESINMDNVYSEIMYLYRQGVRYWFNDAEIEELHLTN 317 L D TGNRRF P V + + +++E ++LY G RY+ + + E Sbjct: 699 LFDITGNRRFWPVLVPGRANLVWLQKFR-GQLFAEALHLYLAGERYFPSPEDEEIYF--R 755 Query: 318 AEFEVQTVE-------FEMLMQYFEKPTEEEESLFFM------TTAQILTCLR-DVCPMQ 363 E E++ VE + +L + E + T A ++ L D Sbjct: 756 PEQELRLVETGVQGRLWALLTREGAPAAEGAAQKGYSVNTTFVTIADLVQALGADPGKSS 815 Query: 364 LSEK-RLGEALRKAGFKRVQK 383 + ++ + L + G++ +++ Sbjct: 816 PMLEGQVRDWLNENGWEYLRE 836
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 846 bits (2188), Expect = 0.0 Identities = 386/1046 (36%), Positives = 578/1046 (55%), Gaps = 32/1046 (3%) Query: 6 FINRPVLSTVISILIVILGILGLFTLPITQYPDIAPPTVSVRATYTGANAQTVLNSVIAP 65 FI RP+ + V++I++++ G L + LP+ QYP IAPP VSV A Y GA+AQTV ++V Sbjct: 5 FIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVTQV 64 Query: 66 LEDQINGVENMMYMTSNASNNGSADISIYFKQGTDPDMAAVNVQNRVSMAQGLLPAEVTK 125 +E +NG++N+MYM+S + + GS I++ F+ GTDPD+A V VQN++ +A LLP EV + Sbjct: 65 IEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEVQQ 124 Query: 126 IGVTTQKRQNSMLVVFAVYDAEDRYDQKFLENYAKINLIPEVQRVPGVGDANVLGTDYSM 185 G++ +K +S L+V Q + +Y N+ + R+ GVGD + G Y+M Sbjct: 125 QGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGAQYAM 184 Query: 186 RIWLKPDVMAQYKLVPNDVSNVLAEQNVEAAPGSFGEQGN---QSFQYTIRYKGRLQTAE 242 RIWL D++ +YKL P DV N L QN + A G G Q +I + R + E Sbjct: 185 RIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFKNPE 244 Query: 243 EFDNIVVKALPDGEVLRLKDIADIELGRLTYNYVNKVNGHNAVACIVYQMPGTNATETIN 302 EF + ++ DG V+RLKD+A +ELG YN + ++NG A + G NA +T Sbjct: 245 EFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAK 304 Query: 303 NIQDLLVRSEATMPPGMKVEVSMNANDFLYASIHEVLKTLLEAFILVFIVVYVFLQDLRS 362 I+ L + P GMKV + F+ SIHEV+KTL EA +LVF+V+Y+FLQ++R+ Sbjct: 305 AIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRA 364 Query: 363 TLIPAIAIPVALIGTFFLLSLIGFSINLLTLCAMVLAIAIVVDDAIVVVEGVHAKLDQGY 422 TLIP IA+PV L+GTF +L+ G+SIN LT+ MVLAI ++VDDAIVVVE V + + Sbjct: 365 TLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMMEDK 424 Query: 423 KSAKQASIDAMSELGGAIVSITLVMMSVFIPVSFMGGTAGIFYRQFGVTMAIAIGLSALN 482 K+A+ +MS++ GA+V I +V+ +VFIP++F GG+ G YRQF +T+ A+ LS L Sbjct: 425 LPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLV 484 Query: 483 ALTLSPALCAIFLKP-HDEHGEKKTTFVSRFHTSFNVAYDSLLKSYKKRVLFFIQKKWLA 541 AL L+PALCA LKP EH E K F FN +D + Y V + Sbjct: 485 ALILTPALCATLLKPVSAEHHENK----GGFFGWFNTTFDHSVNHYTNSVGKILGSTGRY 540 Query: 542 FGTVAASIALLIFFMQVTPTGMVPNEDMGTIMGAVTLPPGASQERTLEIMERV--DSLIA 599 A +A ++ P+ +P ED G + + LP GA+QERT +++++V L Sbjct: 541 LLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKN 600 Query: 600 SDPAVKSRTAITGFSFIGGQGPSYGSFIIKLKDWEERSM-TQSAEVVYGSLFMRAQKVVK 658 V+S + GFSF GQ + G + LK WEER+ SAE V M K ++ Sbjct: 601 EKANVESVFTVNGFSF-SGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGK-IR 658 Query: 659 DAQVLFFTPPMIPGYSASSDIELNMQDKTGGSLEKFFDVSKDYMA-ALTARPEIKSAQTT 717 D V+ F P I ++ + + D+ G + + A + S + Sbjct: 659 DGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPN 718 Query: 718 FNPNFPQYMIDIDAAACKKVGISPSDILMTLQGYYGGLYASNFNRFGKMYRVMVQADPSM 777 + Q+ +++D + +G+S SDI T+ GG Y ++F G++ ++ VQAD Sbjct: 719 GLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKF 778 Query: 778 RANMESLKNIKVRNGN-EMAPISQFITIEKVYGPDIISRFNMYTSMKLMVAPADGFTSGQ 836 R E + + VR+ N EM P S F T VYG + R+N SM++ A G +SG Sbjct: 779 RMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGD 838 Query: 837 ALKALEEVASTTLPAGFGYELGGMAREEAETSGSTTGLIFILCFVFVYLLLSAQYESYVL 896 A+ +E +A + LPAG GY+ GM+ +E SG+ + + FV V+L L+A YES+ + Sbjct: 839 AMALMENLA-SKLPAGIGYDWTGMSYQERL-SGNQAPALVAISFVVVFLCLAALYESWSI 896 Query: 897 PLAVLLSIPFGLMGSFLFVQGWAALGSIPALKMILGTMSNNIYMQIALIMLMGLLAKNAI 956 P++V+L +P G++G L L N++Y + L+ +GL AKNAI Sbjct: 897 PVSVMLVVPLGIVGVLLA--------------ATLFNQKNDVYFMVGLLTTIGLSAKNAI 942 Query: 957 LIVEFALE-RRRMGMSITWAAVLGAAARLRPILMTSLAMVVGLLPMMFAFGVGAHGNRTL 1015 LIVEFA + + G + A ++ RLRPILMTSLA ++G+LP+ + G G+ + Sbjct: 943 LIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAV 1002 Query: 1016 GTAAIGGMFVGMIFQILIVPALFVVF 1041 G +GGM + I VP FVV Sbjct: 1003 GIGVMGGMVSATLLAIFFVPVFFVVI 1028
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 30.2 bits (68), Expect = 0.017 Identities = 14/79 (17%), Positives = 30/79 (37%) Query: 369 QQAILEAGKEVSDALHLYDATNKMLIQDRQQIEQLEKAVTYTKALFQSAQSTYLEILSAQ 428 + A+LE + +A++ L Q +I ++ LF++ L + Sbjct: 251 KHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDN 310 Query: 429 QSLLSAQLTEVSDNVQRMQ 447 LL+ +L + + Q Sbjct: 311 IGLLTLELAKNEERQQASV 329
>FLGMOTORFLIM#Flagellar motor switch protein FliM signature. Length = 344 Score = 29.1 bits (65), Expect = 0.013 Identities = 14/57 (24%), Positives = 30/57 (52%) Query: 4 SMADRLLGCFAKAVREKKELTEVELSSAYTEFMNRLQSITDGGQPIIMKLRQLHRLE 60 S+ DRL G +A + +++LT++E S + L ++ + +I +L ++E Sbjct: 126 SIIDRLFGGTGQAAKVQRDLTDIENSVMEGVIVRILANVRESWTQVIDLRPRLGQIE 182
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 428 bits (1102), Expect = e-150 Identities = 149/472 (31%), Positives = 240/472 (50%), Gaps = 48/472 (10%) Query: 3 TILIIEDDVIYARSIGNWLRKQEMGSERVTTLSAARKSLSDREYDLVLADLRLPDGNSTD 62 TIL+ +DD + L + + + + ++ + DLV+ D+ +PD N+ D Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 63 LLRWMHDHHIVTPFLIMTNYGQVENAVEAMRLGAVNYLCKPIQPDKLLEAIRKEFSRPRH 122 LL + P L+M+ A++A GA +YL KP +L+ I + + P+ Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 123 DGTEF---------YRGESDKAREMYRRISLVAPSDISVLIRGASGTGKEHIALELHEQS 173 ++ G S +E+YR ++ + +D++++I G SGTGKE +A LH+ Sbjct: 125 RPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHDYG 184 Query: 174 RRRNRPYITLDCGSLPEDLAASELFGHRKGAFTGAESDKAGLLQEADGGTLFLDEIGNLS 233 +RRN P++ ++ ++P DL SELFGH KGAFTGA++ G ++A+GGTLFLDEIG++ Sbjct: 185 KRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDMP 244 Query: 234 YKSQMLLLRALQEKCYRPVGSTRERSFDIRLIAATNENLEEAIAEGRFREDLFHRLNEFT 293 +Q LLR LQ+ Y VG D+R++AATN++L+++I +G FREDL++RLN Sbjct: 245 MDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLNVVP 304 Query: 294 IRVPLLSECPEDILPLARFLLGHLMKEHRKRVQGFDRLAEAALRRYPWPGNIRELRNTLR 353 +R+P L + EDI L R + KE V+ FD+ A ++ +PWPGN+REL N +R Sbjct: 305 LRLPPLRDRAEDIPDLVRHFVQQAEKE-GLDVKRFDQEALELMKAHPWPGNVRELENLVR 363 Query: 354 SALLLTDGEWITATSLNLDL--------------------------------------TL 375 L + IT + +L L Sbjct: 364 RLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFGDAL 423 Query: 376 KQEEVPTLTEEEKERQLLLQTLEQAGNNRARAAKMLSISRTTLYEKLRKYGI 427 + E E L+L L N+ +AA +L ++R TL +K+R+ G+ Sbjct: 424 PPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGV 475
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 61.0 bits (148), Expect = 8e-12 Identities = 30/165 (18%), Positives = 65/165 (39%), Gaps = 11/165 (6%) Query: 561 TRILLLDDDIRQLGITKEMLRRCHALCDCCTDSRELIVRLRENTYDVLLTDIQMPEMDGF 620 IL+ DDD + + L R +++ L + D+++TD+ MP+ + F Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 621 SVLELLRSSNIPQARTIPVVALTAHVNKEE--EYLARGFAGRIRKPFTIESLSEGVARII 678 +L ++ + +PV+ ++A + +G + KPF + L + R + Sbjct: 64 DLLPRIKKARP----DLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119 Query: 679 GTSENR-----VWKPDFSLILSGEENRREMLDEFVRESRKDLRVL 718 + R D ++ +E+ R + DL ++ Sbjct: 120 AEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLM 164
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 36.3 bits (83), Expect = 3e-04 Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 27/158 (17%) Query: 139 ILDVSSGLNRLHTNEPSIIHQDIKPANILICN-TKDYAITDFGISSKHSGTHGFYYEDEN 197 +LDV++ H + ++H DIKP N++ + + + D G+ S+ SG E Sbjct: 254 LLDVTN-----HLAKAGVVHNDIKPGNVVFDRASGEPVVIDLGLHSR-SG------EQPK 301 Query: 198 SGTMAYMAPERFQENAEPICQSDIWAFGATLFEILTGNVPFGE----EGGRYQMESKAQV 253 T ++ APE N +SD++ +TL + G E +G R+ A V Sbjct: 302 GFTESFKAPELGVGNLGASEKSDVFLVVSTLLHCIEGFEKNPEIKPNQGLRFITSEPAHV 361 Query: 254 ----------PIVNNTSSDIQRLVNDCLSLEAGNRPSA 281 P + + R + D L + A +RP + Sbjct: 362 MDENGYPIHRPGIAGVETAYTRFITDILGVSADSRPDS 399
>FLGFLGJ#Flagellar protein FlgJ signature. Length = 313 Score = 75.1 bits (184), Expect = 2e-17 Identities = 49/158 (31%), Positives = 72/158 (45%), Gaps = 13/158 (8%) Query: 16 QVRSQSQSDIFTYISQYKQIALEQEKQYGIPASITLAQGILESGAGKSTLTRN----ANN 71 D +++Q A +Q G+P + LAQ LESG G+ + R + N Sbjct: 140 NYDDSLPGDSKAFLAQLSLPAQLASQQSGVPHHLILAQAALESGWGQRQIRRENGEPSYN 199 Query: 72 HFGIKAFGGWTGAI-------YLAWDDERQKSRFRKYPSAVESYRDHAQLLKNNSRYRRL 124 FG+KA G W G + Y + ++ K++FR Y S +E+ D+ LL N RY + Sbjct: 200 LFGVKASGNWKGPVTEITTTEYENGEAKKVKAKFRVYSSYLEALSDYVGLLTRNPRYAAV 259 Query: 125 FSNSVYDYRAWAIELQKAGYATAGNYAKALIGFIDAYK 162 + A LQ AGYAT +YA+ L I K Sbjct: 260 --TTAASAEQGAQALQDAGYATDPHYARKLTNMIQQMK 295
>SECETRNLCASE#Bacterial translocase SecE signature. Length = 127 Score = 28.3 bits (63), Expect = 0.022 Identities = 9/40 (22%), Positives = 21/40 (52%), Gaps = 2/40 (5%) Query: 285 AVAQQAASEKEKERNFWMIIGGIVLAVLAFIGNQIFQGIQ 324 A + S + E W+++ + L ++A +GN +++ I Sbjct: 3 ANTEAQGSGRGLEAMKWVVV--VALLLVAIVGNYLYRDIM 40
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 37.9 bits (88), Expect = 1e-04 Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 2/43 (4%) Query: 102 EIIGMDKELRSLIEILAR--KDRANVLITGETGVGKTSLVHGL 142 ++G ++ + +LAR + ++ITGE+G GK + L Sbjct: 138 PLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARAL 180
>MYCMG045#Hypothetical mycoplasma lipoprotein (MG045) signature. Length = 483 Score = 29.3 bits (65), Expect = 0.025 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 8/64 (12%) Query: 110 FQEEKDRLLSEMPLKVAVTGEFNPTDEELEKEIADMGWSEEDY---AVMQRMSHTCYSFS 166 FQ+E ++ ++ L A + T E+L K ++G +ED+ MQ S+ Y Sbjct: 320 FQKEAHEIIFDLALDGA-----DQTKEQLIKTDEELGTDDEDFYLKGAMQNFSYVNYVSP 374 Query: 167 LQSI 170 L+ I Sbjct: 375 LKVI 378
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 29.0 bits (65), Expect = 0.022 Identities = 8/29 (27%), Positives = 15/29 (51%) Query: 175 ITQIAKELGMSGRELNYRLKSLGVQFRQS 203 + A LG++ L +++ LGV +S Sbjct: 452 QIKAADLLGLNRNTLRKKIRELGVSVYRS 480
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 27.9 bits (62), Expect = 0.045 Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 6/48 (12%) Query: 8 LHSW---VIEVIAVLLASMIAFQVCNIFGI---RMSLLPFIMATGYVI 49 L + +I IAV + + F + FG +++ ++A G ++ Sbjct: 359 LQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLV 406
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 34.7 bits (79), Expect = 0.006 Identities = 28/205 (13%), Positives = 62/205 (30%), Gaps = 36/205 (17%) Query: 1868 TINVEPEEEEPIETENDYYSNATNEPTDSATKATTETSTENQHVDDTKTICEDDKPSAPN 1927 T V P++E+ + N+PT + + ++T+T P Sbjct: 1126 TSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADT-------------EQPA 1172 Query: 1928 KDVTSRPVNELEVGEESETSPKEPIQTASQQSTSDSRPQQ----------------QSQQ 1971 K+ +S + T + + + ++P +S Sbjct: 1173 KETSSNVEQPVTESTTVNTGNSVV-ENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVP 1231 Query: 1972 TESLVGQATSSTAEEESEDDLGQYDTYEQVDEEDIEDYDDTDDVEADVDEDVDTTDNAST 2031 +S+ + DL +T + + + +V V + + + + Sbjct: 1232 HNVEPATTSSNDRSTVALCDLTSTNTNAVLSDARAKAQFVALNVGKAVSQHISQLEMNNE 1291 Query: 2032 TSSNTHMSNTSHASSNKPHKDYDPD 2056 N +SNTS +K+Y Sbjct: 1292 GQYNVWVSNTSM------NKNYSSS 1310
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 100 bits (250), Expect = 7e-24 Identities = 39/131 (29%), Positives = 63/131 (48%), Gaps = 3/131 (2%) Query: 1110 SLLLIEDDMELRTSLQHLLS-EKYYTVTASNGQEGLNIAAQINLDMIISDVMMPKMDGFE 1168 ++L+ +DD +RT L LS Y SN A + D++++DV+MP + F+ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 1169 LCKRIKKDINISHIPVILLTAKIDGSDHLEGLKCGADSYITKPFSYTLLEAQIETILSNR 1228 L RIKK +PV++++A+ ++ + GA Y+ KPF T L I L+ Sbjct: 65 LLPRIKKA--RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122 Query: 1229 KRTIEKFRSSP 1239 KR K Sbjct: 123 KRRPSKLEDDS 133
>ARGREPRESSOR#Bacterial arginine repressor signature. Length = 149 Score = 110 bits (277), Expect = 5e-34 Identities = 55/134 (41%), Positives = 75/134 (55%), Gaps = 3/134 (2%) Query: 3 TKKERLDAICRIIQTKAICNQEELLKELEASGFQVTQATLSRDIKQLKVAKVHDANGDYV 62 K +R I II I Q+EL+ L+ G+ VTQAT+SRDIK+L + KV NG Y Sbjct: 2 NKGQRHIKIREIITANEIETQDELVDILKKDGYNVTQATVSRDIKELHLVKVPTNNGSYK 61 Query: 63 YCLPD---YSALIQPNKVQTEHHPNIEFSGNLAVVKTRPGYAMGIASDIDTHAPHEILGT 119 Y LP ++ L + + + I+ + +L V+KT PG A I + +D EI+GT Sbjct: 62 YSLPADQRFNPLSKLKRSLMDAFVKIDSASHLIVLKTMPGNAQAIGALMDNLDWEEIMGT 121 Query: 120 IAGDDTILIIPREG 133 I GDDTILII R Sbjct: 122 ICGDDTILIICRTH 135
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 30.5 bits (69), Expect = 0.009 Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%) Query: 279 ERYIELFEHITGEKFEKGDTDNLLARIEKNVTDY 312 Y +F G+K DT+ L +EK+ T + Sbjct: 8 AAYANMFGPTVGDKVRLADTE-LFIEVEKDFTTH 40
>SHIGARICIN#Ribosome inactivating protein family signature. Length = 289 Score = 29.8 bits (67), Expect = 0.047 Identities = 10/52 (19%), Positives = 17/52 (32%), Gaps = 5/52 (9%) Query: 729 HIELSADRTNL-----TADGKDLSFINVRVVDKNGNLCPDATNQIKFNVRGN 775 I ++ D TN+ A F + + DA ++ GN Sbjct: 82 TISVAIDVTNVYVMGYRAGDTSYFFNEASATEAAKYVFKDAKRKVTLPYSGN 133
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 45.6 bits (108), Expect = 3e-07 Identities = 58/379 (15%), Positives = 116/379 (30%), Gaps = 105/379 (27%) Query: 58 IEVSVSASGKVIPAFE-EIINSPINTRIVEIYKKGGDSVDVGTPILKLD-------LQSA 109 +E+ +A+GK+ + + I N+ + EI K G+SV G +LKL Sbjct: 80 VEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKT 139 Query: 110 ETEYKKKLDEQQMKQLELEKLRLTG---------------------------HSKLSEME 142 ++ + EQ Q+ + L + S + Sbjct: 140 QSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQ 199 Query: 143 MNLKVSRMELDRKAVELRNERYLDSLGAGTTDKVRQVELDYN-------------VSQLK 189 + LD+K E ++ A ++ + +++ Sbjct: 200 NQKYQKELNLDKKRAE------RLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHA 253 Query: 190 LKEDEQKYIN---------------EQALAEADLKVKELELNIFRKSLAETKRTLDDAQV 234 + E E KY+ E + A + + + + L + ++T D+ + Sbjct: 254 VLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGL 313 Query: 235 RSPRKAILTYVNN--EIGAQVS----------EGTKIA-------IVSDLSHFKIEGEIA 275 + A I A VS EG + IV + ++ + Sbjct: 314 LTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQ 373 Query: 276 DTYGDRIAAGSKAVVKIGS------DKLEGTVSDVTP---------LSKNGVISFTVQ-- 318 + I G A++K+ + L G V ++ L N +IS Sbjct: 374 NKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVIISIEENCL 433 Query: 319 LEEDNHRRLRSGLKTDVYV 337 + + L SG+ + Sbjct: 434 STGNKNIPLSSGMAVTAEI 452
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 25.9 bits (57), Expect = 0.009 Identities = 8/46 (17%), Positives = 13/46 (28%), Gaps = 7/46 (15%) Query: 11 FSVVNMKLRDKYASLDELCRKM--DVDKDMLVHKLAVAGFEYSAEN 54 F + L D+ E + + + YS EN Sbjct: 54 FQFHKIDLADR-----EGMTDLFASGHFERVFISPHRLAVRYSLEN 94
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 39.0 bits (91), Expect = 2e-05 Identities = 60/341 (17%), Positives = 116/341 (34%), Gaps = 19/341 (5%) Query: 52 LPQSVLGLFTGIFIDRWKRKRVMILADSFIAFCTLILAVLFYLDIAKIEHIYILLALRSV 111 L Q G DR+ R+ V++++ L A + Y +A +++L R V Sbjct: 54 LMQFACAPVLGALSDRFGRRPVLLVS--------LAGAAVDYAIMATAPFLWVLYIGRIV 105 Query: 112 G--SAFHMPAMQASVPLLAPKSELIRIAGINQIIQSACNIAGPALAALFISFMEMTNILL 169 + A + + E R G +AGP L L F Sbjct: 106 AGITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFA 165 Query: 170 LDVIGAALACTSLLFVKIPDPDNTEKTQKVHLLKEAKEALTEVRAQNGLSWLFILSIIAT 229 + T +P+ E+ + R ++ L + I Sbjct: 166 AAALNGLNFLTGCFL--LPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQ 223 Query: 230 FFIMPVSVLFPLMTLDHYSGNAFQISLVEAAWGI-GALLGGAFLGMKKFKLNEISLINWM 288 + L+ + D + +A I + AA+GI +L G +L E + Sbjct: 224 LVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLG 283 Query: 289 YILLGVTFGLSGILPVSGYPLFVVLTAVGGISGSLYMASFTTVVQTRINPVVMGRVFSFY 348 I G + L G+ F ++ + G + M + ++ +++ G++ Sbjct: 284 MIADGTGYILLAFA-TRGWMAFPIMVLLAS--GGIGMPALQAMLSRQVDEERQGQLQGSL 340 Query: 349 MSVSLLPSMIGLLSTGFL-ADTIGI--GNTFIIGGGLVGMI 386 +++ L S++G L + A +I G +I G L + Sbjct: 341 AALTSLTSIVGPLLFTAIYAASITTWNGWAWIAGAALYLLC 381 Score = 34.0 bits (78), Expect = 0.001 Identities = 30/125 (24%), Positives = 46/125 (36%), Gaps = 6/125 (4%) Query: 58 GLFTGIFIDRWKRKRVMILADSFIAFCTLILAVLFYLDIAKIEHIYILLALRSVGSAFHM 117 + TG R +R ++L IA T + + F I +LLA M Sbjct: 264 AMITGPVAARLGERRALML--GMIADGTGYILLAFATRGWMAFPIMVLLA----SGGIGM 317 Query: 118 PAMQASVPLLAPKSELIRIAGINQIIQSACNIAGPALAALFISFMEMTNILLLDVIGAAL 177 PA+QA + + ++ G + S +I GP L + T + GAAL Sbjct: 318 PALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAASITTWNGWAWIAGAAL 377 Query: 178 ACTSL 182 L Sbjct: 378 YLLCL 382
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 28.4 bits (63), Expect = 0.023 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 5/54 (9%) Query: 170 VGRPMRIERDVRRMQQICSYVM----AHYVHTISLDDIAAEVGMNRSAFCSYFK 219 + R + E R Q I + V + SL +IA G+ R A +FK Sbjct: 1 MARKTKQEAQETR-QHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFK 53
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 97.2 bits (242), Expect = 3e-26 Identities = 36/141 (25%), Positives = 68/141 (48%), Gaps = 5/141 (3%) Query: 6 TILVVDDNPAILTAVRICLAGEFDKVLTLVSPDTLLTVLAQEEVDVILLDMNFTQGGNSG 65 TILV DD+ AI T + L+ V + TL +A + D+++ D+ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE---- 60 Query: 66 QDGLLWLRAIHKKHPAIPVVLVTAYADIKLAVRGLKMGAADFVTKPWDNQELIRVLKDAI 125 + L I K P +PV++++A A++ + GA D++ KP+D ELI ++ A+ Sbjct: 61 -NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119 Query: 126 DAGRKVVSLEQVEAEHVHKVV 146 ++ S + +++ +V Sbjct: 120 AEPKRRPSKLEDDSQDGMPLV 140 Score = 56.4 bits (136), Expect = 5e-12 Identities = 14/42 (33%), Positives = 24/42 (57%) Query: 133 SLEQVEAEHVHKVVERCHGNISRAAELLGITRQTLYAKMKKL 174 L ++E + + GN +AA+LLG+ R TL K+++L Sbjct: 432 VLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIREL 473
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 50.5 bits (121), Expect = 1e-11 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 5/86 (5%) Query: 37 LAEQMADASTFTYGDVKGMIENLTLLISEALKEGNTVTIDGLGTFSVTAQPNRDVEEPSK 96 L ++A+A+ T D ++ + +S L +G V + G G F V + R P Sbjct: 7 LIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGRNPQT 66 Query: 97 IRAESIKL---KGIGFKPSPKLKDRL 119 E IK+ K FK LKD + Sbjct: 67 --GEEIKIKASKVPAFKAGKALKDAV 90
>PF05272#Virulence-associated E family protein Length = 892 Score = 117 bits (293), Expect = 4e-29 Identities = 52/229 (22%), Positives = 85/229 (37%), Gaps = 25/229 (10%) Query: 390 FYPLEDYLEHLPAWDGKDHIRTLADTL---PTDNTAWRDLFYI------WFLSMVAHWYR 440 +P D+++ WD + + D+ R L Y+ + VA Sbjct: 532 VHPFRDWVKAQQ-WDEVPRLEKWLVHVLGKTPDDYKPRRLRYLQLVGKYILMGHVARVME 590 Query: 441 R----DHLHANSSLPLLVGPQGCGKSTWCRNLLPPSLRMYYTDS-IDFSNKRDAELLLTR 495 D +L G G GKST L+ +++D+ D +D+ + Sbjct: 591 PGCKFD------YSVVLEGTGGIGKSTLINTLVGLD---FFSDTHFDIGTGKDSYEQIAG 641 Query: 496 FALINIDEFDSVSAAYQSFLKNVLQKPVVNARQPYKRSIQALHRYASFIATCNNYDLLTD 555 + E + A +K R Y R +Q R T N L D Sbjct: 642 IVAYELSEMTAFRRADAEAVKAFFSSRKDRYRGAYGRYVQDHPRQVVIWCTTNKRQYLFD 701 Query: 556 PTGSRRFICIGITGTADNSVSVNY-EQLYAQAVSALKAGERYWFTSEEE 603 TG+RRF + + G A+ + QL+A+A+ AGERY+ + E+E Sbjct: 702 ITGNRRFWPVLVPGRANLVWLQKFRGQLFAEALHLYLAGERYFPSPEDE 750
>TYPE3OMOPROT#Type III secretion system outer membrane O protein family signature. Length = 303 Score = 30.0 bits (67), Expect = 0.006 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 5/33 (15%) Query: 156 PYLGCREFSADFTYIENPVKGNGIPEDRDLGYM 188 P+L CR +ENPV G+ +PE + L M Sbjct: 96 PHLSCRRL-----CVENPVPGSALPEGKLLHIM 123
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 28.3 bits (63), Expect = 0.040 Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 13/79 (16%) Query: 46 SREVQERDSKDFQRRLKAAALPARHDLDLFDHNYSQGITAPRLRELRRLGWLEQ----NY 101 + R + +RR ++ + L + ++E+ R+ L + + Sbjct: 111 LIGIIGRALAEPKRRPSKLEDDSQDGMPLVGR-------SAAMQEIYRV--LARLMQTDL 161 Query: 102 NLILMGPSGTGKTFIAAGL 120 L++ G SGTGK +A L Sbjct: 162 TLMITGESGTGKELVARAL 180
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 34.8 bits (80), Expect = 6e-04 Identities = 20/102 (19%), Positives = 38/102 (37%), Gaps = 4/102 (3%) Query: 69 FLMALPAGMFMKRYGYKKGIILGLLLFAAGAFAFIPAAFLHSATPFLVALFIIACGLCIL 128 A+ G R G ++ ++LG++ A +I AF + ++A G + Sbjct: 261 LAQAMITGPVAARLGERRALMLGMI---ADGTGYILLAFATRGWMAFPIMVLLASGGIGM 317 Query: 129 ETAANPYSTILGPTESGAQRLNLSQSFNGLGWILGPLVGGAL 170 S + G + + L I+GPL+ A+ Sbjct: 318 PALQAMLSRQVDEERQGQLQ-GSLAALTSLTSIVGPLLFTAI 358 Score = 29.0 bits (65), Expect = 0.035 Identities = 54/302 (17%), Positives = 92/302 (30%), Gaps = 39/302 (12%) Query: 69 FLMALPAGMFMKRYGYKKGIILGLLLFAAGAFAFIPAAFLHSATPFLVALFI--IACGLC 126 F A G R+G + +++ L A + PFL L+I I G+ Sbjct: 57 FACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIM-------ATAPFLWVLYIGRIVAGIT 109 Query: 127 ILETA-ANPYSTILGPTESGAQRLNLSQSFNGLGWILGPLVGGALIFGGAQDDPFTLTKP 185 A A Y + + A+ + G G + GP++GG + F+ P Sbjct: 110 GATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLM-------GGFSPHAP 162 Query: 186 YILVGGIVLLVAILFFFTRLPEIKVEEQEENRLDTKLPATSMWRHGQ------FVRAVIA 239 + + L + F K E + R A+ W G I Sbjct: 163 FFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIM 222 Query: 240 QFCYCAAQTGIFSFFINYVTELDPQMTNIEASRILAFGGMALFMIGRLSGSFTMKWMAPG 299 Q ++ F D I + AFG + ++G + Sbjct: 223 QLVGQVPAA-LWVIFGEDRFHWDATTIGIS---LAAFGILHSLAQAMITGPV-AARLGER 277 Query: 300 KLLTWFALADAICMALVIVSAGTISLYALYISFFFMSIMFPTIFALGLEGMGAYTKKASS 359 + L +AD L+ + + +M+ + A G GM A S Sbjct: 278 RALMLGMIADGTGYILL-----------AFATRGWMAFPIMVLLASGGIGMPALQAMLSR 326 Query: 360 YI 361 + Sbjct: 327 QV 328
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 61.1 bits (148), Expect = 6e-13 Identities = 35/124 (28%), Positives = 50/124 (40%), Gaps = 16/124 (12%) Query: 151 YVAMSDKLLFESGSARVDKRGKEALAKLAEVL--NKQSDIDVYIEGHTDSKPINTAQFKD 208 + + +LF A + G+ AL +L L D V + G+TD I + + Sbjct: 214 HFTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDR--IGSDAY-- 269 Query: 209 NWDLSVIRATSVVRILTKDYGVNPLQIQPSGRGEYMPVADNESAEGRSK---------NR 259 N LS RA SVV L G+ +I G GE PV N + + +R Sbjct: 270 NQGLSERRAQSVVDYLISK-GIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDR 328 Query: 260 RTEI 263 R EI Sbjct: 329 RVEI 332
>SECFTRNLCASE#Bacterial translocase SecF protein signature. Length = 333 Score = 29.8 bits (67), Expect = 0.009 Identities = 9/33 (27%), Positives = 16/33 (48%) Query: 69 WYSFFLPVAGIITYIRWRYKWILSFSTVMSLVF 101 +S I+ YI R++W + V++LV Sbjct: 156 VWSLLAATVVIMFYIWVRFEWQFALGAVVALVH 188
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 503 bits (1298), Expect = e-179 Identities = 158/479 (32%), Positives = 263/479 (54%), Gaps = 41/479 (8%) Query: 2 GKVLIIDDEKQILGLLSRIIGLEGYDVFQASTCRAGLKQLEQHTPEVILCDVCLPDGSGV 61 +L+ DD+ I +L++ + GYDV S + + ++++ DV +PD + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 62 ELVRELKKLRPHSEIILLTAHGNIPDGVQAIKNGAFDYITKGDDNNKILPLIAKAMEKAS 121 +L+ +KK RP +++++A ++A + GA+DY+ K D +++ +I +A+ + Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE-- 121 Query: 122 AAYCQEKAAVSPVGRQYSFDTIVGKSPAIQEAIALARKVAQTDVPVLLTGETGTGKEVFA 181 ++ +VG+S A+QE + ++ QTD+ +++TGE+GTGKE+ A Sbjct: 122 ----PKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVA 177 Query: 182 QSIHQHSSRSGKAFVAINCSSFSRDLLESEMFGHKAGAFTGALKETKGLFEEADNGTIFL 241 +++H + R FVAIN ++ RDL+ESE+FGH+ GAFTGA + G FE+A+ GT+FL Sbjct: 178 RALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFL 237 Query: 242 DEIGEMAFDLQAKLLRILETGEFIKIGDTRPLKVNVRVIAATNRDLSKEIAEGHFREDLF 301 DEIG+M D Q +LLR+L+ GE+ +G P++ +VR++AATN+DL + I +G FREDL+ Sbjct: 238 DEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLY 297 Query: 302 YRLSVFQIHLPPLRERSEDIPLHVKAFVAALSAKMGKEIQTISPDYINLLKKYGWKGNVR 361 YRL+V + LPPLR+R+EDIP V+ FV K G +++ + + L+K + W GNVR Sbjct: 298 YRLNVVPLRLPPLRDRAEDIPDLVRHFVQQA-EKEGLDVKRFDQEALELMKAHPWPGNVR 356 Query: 362 ELRNVVERSLIIADGDVLTPDSLPLNIQQPNASANEAYAGFD------------------ 403 EL N+V R + DV+T + + ++ + A Sbjct: 357 ELENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYF 416 Query: 404 ----------------LSGVEKMHIQKVLKYTNGNKTETSRLLGIGLTTLYRKIEEYGL 446 L+ +E I L T GN+ + + LLG+ TL +KI E G+ Sbjct: 417 ASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGV 475
>PF06580#Sensor histidine kinase Length = 349 Score = 33.7 bits (77), Expect = 0.002 Identities = 19/133 (14%), Positives = 45/133 (33%), Gaps = 32/133 (24%) Query: 451 RFGCHIEVEY--PEKISKLFVDSEKIAWVLTNLLSNAIHY----TPENGRIIIGARQEGK 504 +F ++ E I + V ++ L+ N I + P+ G+I++ ++ Sbjct: 235 QFEDRLQFENQINPAIMDVQVPP----MLVQTLVENGIKHGIAQLPQGGKILLKGTKDNG 290 Query: 505 VVEIFVRDFGKGIDPRYHQSIFDRYFRVPGTKVQGSGLGLA-----ISKDFVEAHGGTIR 559 V + V + G + +G GL + + I+ Sbjct: 291 TVTLEVENTGSLALKNTK---------------ESTGTGLQNVRERLQMLYGTEAQ--IK 333 Query: 560 VESEIGKGSTFIV 572 + + GK + ++ Sbjct: 334 LSEKQGKVNAMVL 346
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 40.0 bits (93), Expect = 2e-05 Identities = 21/77 (27%), Positives = 28/77 (36%), Gaps = 4/77 (5%) Query: 460 PDLP-GYQPVAGDSFLPPDDTVPLPDDYMPPPPPPEEYPMEETGPMDV--PPPDYPPAQP 516 +LP QP+ + + P D P PP P E P E P P +P Sbjct: 41 IELPAPAQPI-SVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKP 99 Query: 517 PQTVQPVQPVQTGQPKR 533 +P + QPKR Sbjct: 100 KPKPKPKPVKKVEQPKR 116 Score = 38.4 bits (89), Expect = 6e-05 Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 9/129 (6%) Query: 475 PPDDTVPLPDDYMPPPPPPEEYPMEETGPMDVPPPDYPPAQPPQTVQPVQPVQTGQPKRS 534 P + V + P P P+ E DV P + PA P + P +P + + Sbjct: 87 PKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAAT 146 Query: 535 PYEVYELTLLKYIVRYGEQILFDYVDEETNKHIVMRVAEYIRYDLERD----DLTFYTPI 590 V T + R + Y I +V +++D+ D ++ + Sbjct: 147 SKPV---TSVASGPRALSRNQPQYPARAQALRIEGQV--KVKFDVTPDGRVDNVQILSAK 201 Query: 591 IKSMLDEAA 599 +M + Sbjct: 202 PANMFEREV 210
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 69.3 bits (170), Expect = 2e-19 Identities = 27/84 (32%), Positives = 42/84 (50%) Query: 2 NKTEFINELAKRTDRPVTEMYKFVNDFFTLTTEILAREEDILFLGFGRFSPRKQNARPVR 61 NK + I ++A+ T+ + V+ F+ + LA+ E + +GFG F R++ AR R Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGR 62 Query: 62 NPKTGAPAMFYGRTTVGFKPGKDL 85 NP+TG FK GK L Sbjct: 63 NPQTGEEIKIKASKVPAFKAGKAL 86
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 48.7 bits (116), Expect = 3e-08 Identities = 42/182 (23%), Positives = 64/182 (35%), Gaps = 9/182 (4%) Query: 15 IIAATGGLLFGFDTGVISGAIPFFQKDFGIDNGMVE---LITSAGLLGAILGALFCGKLT 71 I+ + L G+I +P +D N + ++ + L A G L+ Sbjct: 8 IVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALS 67 Query: 72 DRLGRRKVILASAVIFAVGAVWSGIAADAWNLVLARLFLGVAIGVSSFAVPL-YIAEISP 130 DR GRR V+L S AV A W L + R+ G+ AV YIA+I+ Sbjct: 68 DRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGAT--GAVAGAYIADITD 125 Query: 131 TKVRGTLVSMFQLMVTIGVLVSYLSDLYFADESDMTCWRPMFYVGVIPACILLIGMFFMP 190 R G++ + S P F + L G F +P Sbjct: 126 GDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHA---PFFAAAALNGLNFLTGCFLLP 182 Query: 191 ET 192 E+ Sbjct: 183 ES 184
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 34.3 bits (79), Expect = 2e-05 Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 2/67 (2%) Query: 55 AIEQIKEGIISLLEDGNSVSISGLGTFTLTA-QSRLVKDPKEIRAGSISVKDVV-FKVSP 112 A++ + + S L G V + G G F + +R ++P+ I V FK Sbjct: 25 AVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGRNPQTGEEIKIKASKVPAFKAGK 84 Query: 113 ELMQRLR 119 L ++ Sbjct: 85 ALKDAVK 91
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 35.8 bits (82), Expect = 0.003 Identities = 45/269 (16%), Positives = 77/269 (28%), Gaps = 28/269 (10%) Query: 363 AGDLR-RMLDEDFHYRLAMRLYSGSIRQAGTEEKVAVQNK-VERPAIKLETVSSAQTVET 420 G + ++ + + Y L + T N + P++ A+ E Sbjct: 964 LGAWKYKLRNVNGRYDLYNPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEA 1023 Query: 421 PTEKPQPADEKPEIEPRPQYSAGVQLTLLDLWGMTEEVSQPKTSKKKKTVKKAVTAKSTP 480 P P PA E + S T E+ Q T + + A AKS Sbjct: 1024 PVPPPAPATPSETTETVAENSKQESKT-------VEKNEQDATETTAQNREVAKEAKSNV 1076 Query: 481 P-----------KPKVTVTPTAPTAKPAMENKEVKA-ENTAKPADPDDIYATLDWDTNPP 528 + T T T + A KE KA T K + + + +P Sbjct: 1077 KANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTS----QVSPK 1132 Query: 529 INGFYEMMMGLTPERRKELRELARQHKEKQVAEKTEVKAVPETSREQPRQEETQPEAVAA 588 + P R + ++ + + + ETS + Sbjct: 1133 QEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTG 1192 Query: 589 PAVTDTPSEAVGTFLFPDIEAE---KPKE 614 +V + P P + +E KPK Sbjct: 1193 NSVVENPENTTPATTQPTVNSESSNKPKN 1221
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 905 bits (2340), Expect = 0.0 Identities = 264/642 (41%), Positives = 398/642 (61%), Gaps = 11/642 (1%) Query: 1 MNIINLGILAHIDAGKTSVTENLLFASGATEKCGRVDNGDTITDSMDIEKRRGITVRAST 60 M IIN+G+LAH+DAGKT++TE+LL+ SGA + G VD G T TD+ +E++RGIT++ Sbjct: 1 MKIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGI 60 Query: 61 TSIIWNGVKCNIIDTPGHMDFIAEVERTFKMLDGAVLILSAKEGIQAQTKLLFSTLQKLQ 120 TS W K NIIDTPGHMDF+AEV R+ +LDGA+L++SAK+G+QAQT++LF L+K+ Sbjct: 61 TSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMG 120 Query: 121 IPTIIFINKIDRAGVNLERLYMDIKTNLSQDVLFMQTVVDGSVYP-VCSQTYIKEEYKEF 179 IPTI FINKID+ G++L +Y DIK LS +++ Q V +YP +C + + E + Sbjct: 121 IPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKV---ELYPNMCVTNFTESEQWDT 177 Query: 180 VCNHDDDILERYLADSEISPADYWNTIIALVAKAKVYPVLHGSAMFNIGINELLDAISS- 238 V +DD+LE+Y++ + + ++PV HGSA NIGI+ L++ I++ Sbjct: 178 VIEGNDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNK 237 Query: 239 FILPPASVSNRLSAYLYKIEHDPKGHKRSFLKIIDGSLRLRDVVRINDSEKFIKIKNLKT 298 F + L ++KIE+ K + +++++ G L LRD VRI++ EK IKI + T Sbjct: 238 FYSSTHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEK-IKITEMYT 296 Query: 299 IYQGREINVDEVGANDIAIVEDIEDFRIGDYLGAKPCLIQG--LSHQHPALKSSVRPNKP 356 G +D+ + +I I+++ E ++ LG L Q + + P L+++V P+KP Sbjct: 297 SINGELCKIDKAYSGEIVILQN-EFLKLNSVLGDTKLLPQRERIENPLPLLQTTVEPSKP 355 Query: 357 EERSKVISALNTLWIEDPSLSFSINSYSDELEISLYGLTQKEIIQTLLEERFSVKVHFDE 416 ++R ++ AL + DP L + ++S + E+ +S G Q E+ LL+E++ V++ E Sbjct: 356 QQREMLLDALLEISDSDPLLRYYVDSATHEIILSFLGKVQMEVTCALLQEKYHVEIEIKE 415 Query: 417 IKTIYKERPIKKVNKIIQIEVPPNPYWATIGLTLEPLPLGAGLQIESDISYGYLNHSFQN 476 IY ERP+KK I IEVPPNP+WA+IGL++ PLPLG+G+Q ES +S GYLN SFQN Sbjct: 416 PTVIYMERPLKKAEYTIHIEVPPNPFWASIGLSVSPLPLGSGMQYESSVSLGYLNQSFQN 475 Query: 477 AVFEGIRMSCQSGLHGWEVTDLKVTFTQAEYYSPVSTPADFRQLTPYVFRLALQQSGVDI 536 AV EGIR C+ GL+GW VTD K+ F YYSPVSTPADFR L P V L+++G ++ Sbjct: 476 AVMEGIRYGCEQGLYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQVLKKAGTEL 535 Query: 537 LEPMLCFELQIPQVASSKAITDLQKLMSEIEDISCNNEWCHIKGKVPLNTSKDYASEVSS 596 LEP L F++ PQ S+A TD K + I D N + G++P ++Y S+++ Sbjct: 536 LEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQLKNNEVILSGEIPARCIQEYRSDLTF 595 Query: 597 YTKGLGIFMVKPCGYQITK-DGYSDNIRMNEK-DKLLFMFQK 636 +T G + + + GY +T + R N + DK+ +MF K Sbjct: 596 FTNGRSVCLTELKGYHVTTGEPVCQPRRPNSRIDKVRYMFNK 637
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 67.9 bits (166), Expect = 5e-14 Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 5/114 (4%) Query: 543 IDNDEVLLLMLKEMYSQEGIHCDTCTDAAALMEMIRQKEYSLLLTDLNMPDINGFELLEL 602 D+D + +L + S+ G ++AA L I + L++TD+ MPD N F+LL Sbjct: 9 ADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDLLPR 68 Query: 603 LRSSNVGNSPTIPVVVATASGSC-NKGELLAKGFAGCLFKPFSISELMEVSDRC 655 ++ + P +PV+V +A + + KG L KPF ++EL+ + R Sbjct: 69 IKKAR----PDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRA 118
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 474 bits (1222), Expect = e-168 Identities = 157/480 (32%), Positives = 240/480 (50%), Gaps = 46/480 (9%) Query: 1 MNKTKIIVVEDNIVYCEYVCNMLSREGYRNMKAYHLSTAKKHLQQATDNDIVVADLRLPD 60 M I+V +D+ + LSR GY + +T + + D+VV D+ +PD Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGD-GDLVVTDVVMPD 59 Query: 61 GSGIDLLCWMRKEGKMQPFIIMTDYAEVNTAVESMKLGSIDYIPKQLVEDKLVPLIRSIL 120 + DLL ++K P ++M+ TA+++ + G+ DY+PK +L+ +I L Sbjct: 60 ENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119 Query: 121 KERQAGQRRMPIFAREG-------SAFQKIMHRIRLVAATDMSVMIFGENGTGKEHIAHL 173 E + ++ +++G +A Q+I + + TD+++MI GE+GTGKE +A Sbjct: 120 AEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARA 179 Query: 174 LHDKSKRAGKPFVAVDCGSLSKELAPSAFFGHVKGAFTGADNAKKGYFHEAEGGTLFLDE 233 LHD KR PFVA++ ++ ++L S FGH KGAFTGA G F +AEGGTLFLDE Sbjct: 180 LHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDE 239 Query: 234 VGNLALETQQMLLRAIQERRYRPVGDKADRNFNVRIIAATNEDLEVSVNEKRFRQDLLYR 293 +G++ ++ Q LLR +Q+ Y VG + +VRI+AATN+DL+ S+N+ FR+DL YR Sbjct: 240 IGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYR 299 Query: 294 LHDFGITVPPLRDCQEDIMPLAEFFRDMANRELECSVSGFSSEARKALLTHAWPGNVREL 353 L+ + +PPLRD EDI L F A +E V F EA + + H WPGNVREL Sbjct: 300 LNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKE-GLDVKRFDQEALELMKAHPWPGNVREL 358 Query: 354 RQKVMGAVLQAQEGVVMKEHLELAVT----------KPTSTVSFALRNDAED-------- 395 V + V+ +E +E + + S ++ E+ Sbjct: 359 ENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFAS 418 Query: 396 -------------------KERILRALKQANGNRSVAAELLGIGRTTLYSKLEEYGLKYK 436 IL AL GN+ AA+LLG+ R TL K+ E G+ Sbjct: 419 FGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGVSVY 478
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 31.3 bits (71), Expect = 0.004 Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 12/71 (16%) Query: 5 KTIIVGASGQVGSHLIKRLSENGIPAIAL-VRNP-----------EKIKNLNLEVRQADL 52 K ++ GA+G +G H+ KRL E G + + N E + + + DL Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 53 FDTEQVIKSFQ 63 D E + F Sbjct: 62 ADREGMTDLFA 72
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 30.3 bits (68), Expect = 0.002 Identities = 10/30 (33%), Positives = 11/30 (36%) Query: 32 AQEPPAPAPEEESVPETEPPPVQSTAKEKP 61 + P A P E V E EP P K Sbjct: 55 LEPPQAVQPPPEPVVEPEPEPEPIPEPPKE 84 Score = 28.0 bits (62), Expect = 0.011 Identities = 11/29 (37%), Positives = 11/29 (37%) Query: 33 QEPPAPAPEEESVPETEPPPVQSTAKEKP 61 P P PE P E P V K KP Sbjct: 68 VVEPEPEPEPIPEPPKEAPVVIEKPKPKP 96
>PF04619#Dr-family adhesin Length = 160 Score = 30.7 bits (69), Expect = 0.004 Identities = 27/132 (20%), Positives = 51/132 (38%), Gaps = 4/132 (3%) Query: 1 MRKVIMMFALAMGIATANAQENVTVGQSNGSEQPTLTKEVYPQKEADGDLYHGLTR-KLG 59 M+K+ +M A +M A ++A T + G+ + T+T+E + GDL TR +L Sbjct: 1 MKKLAIMAAASMVFAVSSAHAGFTPSGTTGTTKLTVTEECQVRV---GDLTVAKTRGQLT 57 Query: 60 FDRMVPPHGLEVTYDKTVHVIFPAEVRYVDLGSPDLIAGKAEGAENVIRVKATVRNFPNE 119 + P ++ V A+ + G LI+ V + + Sbjct: 58 DAAPIGPVTVQALGCDARQVALKADTDNFEQGKFFLISDNNRDKLYVNIRPTDNSAWTTD 117 Query: 120 TNMSVITEDGSF 131 + + GS+ Sbjct: 118 NGVFYKNDVGSW 129
>SECA#SecA protein signature. Length = 901 Score = 26.0 bits (57), Expect = 0.035 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 4/42 (9%) Query: 54 PFDALVQILEGEMEIVVDGNHSRMKAGESLVLPANVPHALTA 95 FD VQ+L G ++ + + M+ GE L A +P L A Sbjct: 83 HFD--VQLLGGM--VLNERCIAEMRTGEGKTLTATLPAYLNA 120
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 79.1 bits (195), Expect = 5e-18 Identities = 56/305 (18%), Positives = 109/305 (35%), Gaps = 52/305 (17%) Query: 305 ILVTGAAGSIGSEICRQLAHFPICKLICFDSAETPMHNLRLELE--DKFPNLNFVPVIGD 362 LVTGAAG IG + ++L +++ D+ +++ L+ + F D Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGH-QVVGIDNL-NDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 363 VRNGDRLDYVFRKWHPHIVFHAAAYKHVPLMEENPCEAVRVNVYGTRLVADTAVKYNVEK 422 + + + + +F H VF + V ENP N+ G + + ++ Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 423 FVMIST---------------DKAVNPTNIMGCSKRLAEIYVQSLNQAIMTGEVLGSTKF 467 + S+ D +P ++ +K+ E+ + + L Sbjct: 121 LLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSH-------LYGLPA 173 Query: 468 ITTRFGNVLGSNGS---VIPRFREQISNGGPVTV----------THPD-----IIRYFMT 509 RF V G G + +F + + G + V T+ D IIR Sbjct: 174 TGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDV 233 Query: 510 IPEA-CRLVLEAGTMGNG---GEIFVFDMGEPVKIVELARRMIELSGMKVGKDIEIKYTG 565 IP A + +E GT ++ PV++++ I+ +G + + Sbjct: 234 IPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDY----IQALEDALGIEAKKNMLP 289 Query: 566 LRPGE 570 L+PG+ Sbjct: 290 LQPGD 294
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 104 bits (261), Expect = 2e-29 Identities = 70/257 (27%), Positives = 111/257 (43%), Gaps = 28/257 (10%) Query: 2 NILVTGCSRGVGLEICRVLLEQGHTVYGIARSYTDDLKVLAVQYKDKLLFKS----LDLS 57 +TG ++G+G + R L QG + + Y + V + D+ Sbjct: 10 IAFITGAAQGIGEAVARTLASQGAHIAAV--DYNPEKLEKVVSSLKAEARHAEAFPADVR 67 Query: 58 DTTGIYQQLFKEFITNQIV-----LDGVVNNAAMAYDDIITNLNLEKLTAMYAVNVFAPM 112 D+ I + T +I +D +VN A + +I +L+ E+ A ++VN Sbjct: 68 DSAAIDEI------TARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVF 121 Query: 113 MITKYVIRNMLLHHRKGSIIHISSISVHTGYKGLAMYASSKGALEAFSKDTAREWGELGI 172 ++ V + M+ R GSI+ + S +A YASSK A F+K E E I Sbjct: 122 NASRSVSKYMM-DRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNI 180 Query: 173 RSNVVVPGFMETEMSSSL-----TKEQKNRIYKRT-----SMKQATSIHSVAETVVFLLS 222 R N+V PG ET+M SL EQ + T +K+ +A+ V+FL+S Sbjct: 181 RCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVS 240 Query: 223 EKASSITGQNIHVDNGT 239 +A IT N+ VD G Sbjct: 241 GQAGHITMHNLCVDGGA 257
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 92.0 bits (228), Expect = 2e-24 Identities = 70/258 (27%), Positives = 115/258 (44%), Gaps = 11/258 (4%) Query: 5 NPLDLTGRRYLITGAASGIGKATCILLSRLGAELLLVDINLDGLQVTQQLCNNRTFL--- 61 N + G+ ITGAA GIG+A L+ GA + VD N + L+ Sbjct: 2 NAKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEA 61 Query: 62 LSIDLTDTELMRQNICEAVMDFGTLNGFAHIAGRPYITPLKGVSEKVCTEVYKLNAYAAI 121 D+ D+ + + + G ++ ++AG + +S++ + +N+ Sbjct: 62 FPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVF 121 Query: 122 ELAKLFTNRRIYAGKNGSVVLISSVYGVVGSAANVGYAMSKSAIIGITKALAMEFASKNI 181 ++ + + ++GS+V + S V + YA SK+A + TK L +E A NI Sbjct: 122 NASRSVSKY-MMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNI 180 Query: 182 RFNCIAPGFIRTPMMD---ANINSFDQ---NYLDTLNRLHPLG-LGEADDIANAVAYLFS 234 R N ++PG T M A+ N +Q L+T PL L + DIA+AV +L S Sbjct: 181 RCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVS 240 Query: 235 DMAKWVTGSVMHVDGGFT 252 A +T + VDGG T Sbjct: 241 GQAGHITMHNLCVDGGAT 258
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 82.0 bits (202), Expect = 8e-21 Identities = 54/242 (22%), Positives = 101/242 (41%), Gaps = 20/242 (8%) Query: 7 ILITGASSGMGREMAIRFSTNYCVIL----NGRDSRRLEETRQLCINPTEQLIWQY-DLS 61 ITGA+ G+G +A ++ I N ++ + + E D + Sbjct: 11 AFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDSA 70 Query: 62 KVDDLENSFVAFMAEHQIRVKYFVHCAGFMKIYPLKMVTATLFQETFSINVTAAALLVKA 121 +D++ M + V+ AG ++ + ++ ++ TFS+N T ++ Sbjct: 71 AIDEITARIEREMG----PIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRS 126 Query: 122 LINRKINDTALNSVVLISSNISNFGAKAFSVYGASKGAVDALMRSLAVELAPR-VRVNSV 180 + + D S+V + SN + + + Y +SK A + L +ELA +R N V Sbjct: 127 VSK-YMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 181 LPGGVRTAMTEHMYQDQ----ELINRMATAYPLG-----LGEVGDIYEAVHFLLSDRARW 231 PG T M ++ D+ ++I + G L + DI +AV FL+S +A Sbjct: 186 SPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGH 245 Query: 232 VT 233 +T Sbjct: 246 IT 247
>CHLAMIDIAOMP#Chlamydia major outer membrane protein signature. Length = 393 Score = 30.7 bits (69), Expect = 7e-04 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 7/44 (15%) Query: 35 PMPAPPEPSLPSD-------AGDGSDPDLYWSDTLALTQGDWGD 71 P+ P EPSL D GD DP W D +++ G +GD Sbjct: 24 PVGNPAEPSLMIDGILWEGFGGDPCDPCTTWCDAISMRMGYYGD 67
>FLGFLGJ#Flagellar protein FlgJ signature. Length = 313 Score = 54.3 bits (130), Expect = 1e-11 Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 22/133 (16%) Query: 4 KDFITKYLPLAQKAGEAFRINPVVILAQAAIETGWAQSDLCLLH----HNFFGITAYGKK 59 K F+ + AQ A + + +ILAQAA+E+GW Q + + +N FG+ A G Sbjct: 150 KAFLAQLSLPAQLASQQSGVPHHLILAQAALESGWGQRQIRRENGEPSYNLFGVKASGN- 208 Query: 60 NVWWTGTSVQLSTNSL----------SFRTYPDPLHSFMDYARLI----RHAYTDAADVS 105 W G +++T FR Y L + DY L+ R+A A + Sbjct: 209 ---WKGPVTEITTTEYENGEAKKVKAKFRVYSSYLEALSDYVGLLTRNPRYAAVTTAASA 265 Query: 106 YQPAAFALKIGYS 118 Q A GY+ Sbjct: 266 EQGAQALQDAGYA 278
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 36.1 bits (83), Expect = 2e-04 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%) Query: 64 RVPVDLSDYKPIDIVGTGGDGKNTFNISTASCFVVAGAGYNVVKH--GNYGATSVSG 118 V + Y+ I I GDG + +S S + AG G++VV + + G ++ G Sbjct: 599 HASVGNNQYREIRIESHLGDGDDKVFLSAGSANIYAGKGHDVVYYDKTDTGYLTIDG 655
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.7 bits (66), Expect = 0.013 Identities = 15/69 (21%), Positives = 24/69 (34%), Gaps = 4/69 (5%) Query: 116 TDQYVLTLGFDEAKASPTKVNSITVKAQRKLTFKSIGTGTFTSSLF---EESWPQVIEKA 172 V LG D K+SP + + ++ + + + WP VI + Sbjct: 800 IADLVQALGADPGKSSPMLEGQVR-DWLNENGWEYLRETSGQRRRGYMRPQVWPPVIAED 858 Query: 173 VEADVYRLP 181 EAD P Sbjct: 859 KEADQAHAP 867
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 31.0 bits (70), Expect = 0.011 Identities = 18/90 (20%), Positives = 24/90 (26%), Gaps = 10/90 (11%) Query: 32 PNTAEKVEAGYLFNYAA-VNWSGNRIGGDSYIPFSQSIQSQADGGDNYGGWGEAYYVIST 90 P + L NY N NRIGG+S G N G W + Sbjct: 175 PELWDPGINAGLLNYNFSGNSVQNRIGGNS-----HYAYLNLQSGLNIGAW----RLRDN 225 Query: 91 YSLGNTWVSYYSVCGNNLQLAIQQAQNSVP 120 + S N Q + + Sbjct: 226 TTWSYNSSDSSSGSKNKWQHINTWLERDII 255
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 31.8 bits (72), Expect = 0.004 Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 1/87 (1%) Query: 471 YNSKAYEAAGEGYEELVPLMGHKPELLFEAAQCLSKSERFEEANRLLERAMKLS-GDPMI 529 Y S YE A + ++ L L + C +++ A + +P Sbjct: 47 YQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIKEPRF 106 Query: 530 HYMAAKNEQSMGNYQKAENLLLHAIDM 556 + AA+ G +AE+ L A ++ Sbjct: 107 PFHAAECLLQKGELAEAESGLFLAQEL 133 Score = 31.8 bits (72), Expect = 0.005 Identities = 12/77 (15%), Positives = 30/77 (38%), Gaps = 6/77 (7%) Query: 538 QSMGNYQKAENLLLHAIDMLPERIYPYYLLTKLYSEPGFFQKDKFLKAANAVLEKEPKVK 597 Q+MG Y A + + M + + ++ QK + +A + + + + Sbjct: 81 QAMGQYDLAIHSYSYGAIMDIKEPRFPF-----HAAECLLQKGELAEAESGLFLAQELIA 135 Query: 598 -STAIREMREEVKILIQ 613 T +E+ V +++ Sbjct: 136 DKTEFKELSTRVSSMLE 152
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.8 bits (67), Expect = 0.021 Identities = 15/70 (21%), Positives = 34/70 (48%), Gaps = 5/70 (7%) Query: 220 EQQKIKLTELQTQKQKTELISKQQAEL-IEQKQAELAELQVKIKNTEFVNKQQAESIEQK 278 E++ ++LT L ++ T K Q EL +++K+AE + +I E + + + Sbjct: 181 EEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYE----NLSRVEKSR 236 Query: 279 QAELFALQNE 288 + +L ++ Sbjct: 237 LDDFSSLLHK 246
>PF04605#Virulence-associated protein D (VapD) Length = 125 Score = 103 bits (257), Expect = 3e-32 Identities = 17/93 (18%), Positives = 39/93 (41%), Gaps = 3/93 (3%) Query: 3 AIAFDMMIADLRLHYGEPYNNAYFEINQILRKYNFYNTQGSVYMTENT-DMSNLFRAIDA 61 AI FD+ L ++ + Y I + + + F + Q S Y ++ + + R ++ Sbjct: 7 AINFDLSTKSLEKYF-KDTREPYSLIKKFMLENGFEHRQYSGYTSKEPINERRVIRIVNK 65 Query: 62 L-KHIDWFKNSVRDIRAFRVEDWSNFTDFVQEK 93 L K W V++ + + + + +Q+ Sbjct: 66 LTKKFTWLGECVKEFDITEIGEQYSLKETIQDL 98
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 34.7 bits (80), Expect = 4e-05 Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 1/86 (1%) Query: 36 ELADEIADICSFSPGDVKGVIRALSDRLAFHLKYGETVDLDGIGNFSVTLKTPKGITSPK 95 +L ++A+ + D + A+ ++ +L GE V L G GNF V + + +P+ Sbjct: 6 DLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGRNPQ 65 Query: 96 QIRAESISFNNVVY-RSSPQLKQQLK 120 I + V ++ LK +K Sbjct: 66 TGEEIKIKASKVPAFKAGKALKDAVK 91
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 181 bits (461), Expect = 1e-56 Identities = 85/351 (24%), Positives = 149/351 (42%), Gaps = 46/351 (13%) Query: 6 NILITGGAGFIGSHVVRLFVNKYPEYRIINLDKLT--YAGNL--ANLTDIENMPNYTFVK 61 L+TG AGFIG HV + + ++++ +D L Y +L A L + P + F K Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAG--HQVVGIDNLNDYYDVSLKQARLELLAQ-PGFQFHK 58 Query: 62 ADICDFEKIVEIFKQYRIDGVIHLAAESHVDRSIRDPFTFANTNVMGTLSLLQAAKVCWD 121 D+ D E + ++F + V V S+ +P +A++N+ G L++L+ + Sbjct: 59 IDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCR---- 114 Query: 122 GNYEDKRFYHISTDEVYGA---LPFDGTFFTETTKYDPHSPYSASKASSDHFVRAFHDTY 178 + + + + S+ VYG +PF T+ + P S Y+A+K +++ + Y Sbjct: 115 -HNKIQHLLYASSSSVYGLNRKMPFS----TDDSVDHPVSLYAATKKANELMAHTYSHLY 169 Query: 179 GLPIVITNCSNNYGPYQFPEKLIPLFINNICHGKPLPVYGKGGNVRDWLYVVDHA----R 234 GLP YGP+ P+ + F + GK + VY G RD+ Y+ D A R Sbjct: 170 GLPATGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIR 229 Query: 235 AIDIIFHKGKIA--------------ETYNIGGFNEWKNIDLIKVIIKTVDKLLGNPEGT 280 D+I H YNIG + + +D I+ + + Sbjct: 230 LQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGI-------- 281 Query: 281 SEQLITYVTDRAGHDLRYAIDSTKLKHELGWEPSLQFEEGIEKTVRWYLDN 331 E + + G L + D+ L +G+ P ++G++ V WY D Sbjct: 282 -EAKKNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDF 331
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 52.9 bits (127), Expect = 3e-10 Identities = 33/163 (20%), Positives = 54/163 (33%), Gaps = 35/163 (21%) Query: 3 NILVTGANGQLGS---------------------------EMRRLAGRATPDHYVFTDVA 35 LVTGA G +G + RL A P F Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPG---FQFH- 57 Query: 36 ELDITDLQALRQCMTENRITIVVNCAAYTNVDKA-EDDFETADLINHKAVENLAVACKEA 94 ++D+ D + + V V + E+ AD N N+ C+ Sbjct: 58 KIDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADS-NLTGFLNILEGCRHN 116 Query: 95 G-ATLIHVSTDYVFQGSGNLPCREDEQTN-PLGVYGKTKLAGE 135 L++ S+ V+ + +P D+ + P+ +Y TK A E Sbjct: 117 KIQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANE 159
>TYPE3OMGPROT#Type III secretion system outer membrane G protein family signature. Length = 607 Score = 29.1 bits (65), Expect = 0.011 Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 1/60 (1%) Query: 11 VFILQPRVFGDERGYFFESFSQRDFENQVCKTIFVQDNESKSCYGVLRGLHFQKPPYAQS 70 +FI++PR+ + + + +D + T+ N+S + +L G Q AQ Sbjct: 501 LFIIEPRIIDEGIAHHLALGNGQDLRTGI-LTVDEISNQSTTLNKLLGGSQCQPLNKAQE 559
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 27.9 bits (62), Expect = 0.049 Identities = 5/38 (13%), Positives = 16/38 (42%) Query: 176 ETFNYNSDEYTTRKLLLNCSKIVFSDAIFYYRINNPNA 213 E + + E +++ ++ +Y+ +NP + Sbjct: 107 EGWIAAAREEYFDAVMVMSARPEQDRWSRFYKTDNPQS 144
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 114 bits (287), Expect = 5e-33 Identities = 65/259 (25%), Positives = 120/259 (46%), Gaps = 23/259 (8%) Query: 4 MENKIVFITGGDKGIGKAIVCRFAELYKTVIFTYNKNVEGAKEVGEAFSNVFFYQ----C 59 +E KI FITG +GIG+A+ A + + N E ++V + + Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIA-AVDYNPEKLEKVVSSLKAEARHAEAFPA 64 Query: 60 DLANAGQCENLAKDIIRTYGKVDILINNAGYDNDSTFLKMEKDQWDTVIDINLRSIYYFT 119 D+ ++ + + I R G +DIL+N AG + ++W+ +N ++ + Sbjct: 65 DVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 120 QSFSRIMSECKWGRIINLTSIAGFTGAFGKSNYAAAKAGVVGFTKSLAMELGKKGVTVNA 179 +S S+ M + + G I+ + S + YA++KA V FTK L +EL + + N Sbjct: 125 RSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNI 184 Query: 180 IAPGAIKTEMLMRI--------------PEKYREGIIGNIPAGRFGEPEEVADLAEFLVS 225 ++PG+ +T+M + E ++ G IP + +P ++AD FLVS Sbjct: 185 VSPGSTETDMQWSLWADENGAEQVIKGSLETFKTG----IPLKKLAKPSDIADAVLFLVS 240 Query: 226 DKAKYINGQTIHINGGSYL 244 +A +I + ++GG+ L Sbjct: 241 GQAGHITMHNLCVDGGATL 259
>SUBTILISIN#Subtilisin serine protease family (S8) signature. Length = 326 Score = 30.6 bits (69), Expect = 0.038 Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 8/84 (9%) Query: 794 TVEAADDYAVEKTYIVTWKSGNSATFQIANKSDETKTTTYTVNAP-VTTITATDNFYVKA 852 + A AV +V +GN D T Y V ++ A + + Sbjct: 156 ELHEAVKKAVASQILVMCAAGNEGDG-----DDRTDELGYPGCYNEVISVGAINFDRHAS 210 Query: 853 --ANSGSTNISVTSPEGVKATVLN 874 +NS + V E + +TV Sbjct: 211 EFSNSNNEVDLVAPGEDILSTVPG 234
>BINARYTOXINB#Binary toxin B family signature. Length = 764 Score = 27.7 bits (61), Expect = 0.048 Identities = 11/48 (22%), Positives = 22/48 (45%) Query: 137 NASVRHYRSLHNSFHKYLPTENILLNDIDEELIKKYESWLIERKLHPN 184 NA++R+ + + LPT +++L K + + + L PN Sbjct: 390 NANIRYVNTGTAPIYNVLPTTSLVLGKNQTLATIKAKENQLSQILAPN 437
>PF05272#Virulence-associated E family protein Length = 892 Score = 31.2 bits (70), Expect = 0.013 Identities = 18/83 (21%), Positives = 28/83 (33%), Gaps = 16/83 (19%) Query: 32 LMGKNGAGKSTLLKILAGVREPTRGKVSAP--KDTVIAYLPQHLMTEDGRTVFEETAQAF 89 L G G GKSTL+ L G+ + KD+ G +E Sbjct: 601 LEGTGGIGKSTLINTLVGLDFFSDTHFDIGTGKDSYEQIA--------GIVAYE-----L 647 Query: 90 AHLHEM-EAEIETINKELETRTD 111 + + A+ E + +R D Sbjct: 648 SEMTAFRRADAEAVKAFFSSRKD 670
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 112 bits (282), Expect = 3e-31 Identities = 59/294 (20%), Positives = 112/294 (38%), Gaps = 19/294 (6%) Query: 19 IIVLVFLLFSKSTSNNSTNPPLTDVLTDSISRIVSACPGEIGVAIIINNTDT--VKVNDK 76 I + + L + +P + I S G +G+ + + Sbjct: 4 IRLCIISLLATLPLAVHASP----QPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRAD 59 Query: 77 SVYPMMSVFKVHQALALCNDFDNKGISLDTLVKIDRNRLDSKTWSPMMKDYSELVISLTV 136 +PMMS FKV A+ D L+ + + D +SP+ + + L +TV Sbjct: 60 ERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHY--RQQDLVDYSPVSEKH--LADGMTV 115 Query: 137 RDLLRYTIAQSDNNASNLMFKDMVNVAQTDSFIATLIPRSSFQIAYTEEEMSADHDRAYF 196 +L I SDN+A+NL+ + A +F+ I + ++ E E++ Sbjct: 116 GELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQ-IGDNVTRLDRWETELNEALPGDAR 174 Query: 197 NYTSPLGAAMLMNRLFTESIVSGEKQSFIKNTLKECVTGTDRIVAPLLDKERVSIAHKTG 256 + T+P A + +L T +S Q + + + I + L + A KTG Sbjct: 175 DTTTPASMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFI--ADKTG 232 Query: 257 SGYVNENGILAAHNDVAYICLPNNVCYTLAIFVKDFKGNESQASQYVAHISEVV 310 +G A VA + N + I+++D + ++ +Q +A I + Sbjct: 233 AGE------RGARGIVALLGPNNKAERIVVIYLRDTPASMAERNQQIAGIGAAL 280
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 35.2 bits (81), Expect = 5e-04 Identities = 20/181 (11%), Positives = 50/181 (27%), Gaps = 29/181 (16%) Query: 177 MNHDTGKSQKLNDDDMMEMQTLASDILSMQRGQSKSETGKEHLERNDFIIEKQRAELQRM 236 + + ++ + + + Q + + E ++K+RAE + Sbjct: 170 LPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELN----------LDKKRAERLTV 219 Query: 237 DAAKRHKEEQIGLAEQELKQVKSEIRTDKLKKTATNAATAIASGVGSLFGSGKMKELERT 296 A E + + L A A + E E Sbjct: 220 LARINRYENLSRVEKSRLD---------DFSSLLHKQAIAKH----------AVLEQENK 260 Query: 297 NEDLHQEIAKRDKGIDTLKIQMQEMQERHGKQIRNLQSIHNQELEAKDREISRLNTLLEK 356 + E+ ++ ++ ++ +E + + ++ +L I L L K Sbjct: 261 YVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAK 320 Query: 357 A 357 Sbjct: 321 N 321
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 29.5 bits (66), Expect = 0.007 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 5/55 (9%) Query: 59 IEYVPAEKAWVPVNAPGYLMINCFWVSGQYKGCGHGKALLQSAIDDARSQGKAGL 113 I + W GY +I V+ Y+ G G ALL AI+ A+ GL Sbjct: 77 IGRIKIRSNW-----NGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGL 126
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 36.7 bits (85), Expect = 5e-05 Identities = 35/185 (18%), Positives = 66/185 (35%), Gaps = 40/185 (21%) Query: 1 MKFLVIGL-GNLGRAIAENLTRIGDEVIGVD---------LNLHKVEAVKQTISGSVSLD 50 MK+LV G G +G +++ L G +V+G+D L ++E + Q +D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 51 TTDRDALNTL-PLSEMDAIFVTYGK----------------NFGTSVQTVALLKSLDASR 93 DR+ + L + +F++ + N + + + Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 94 LIVRSISPIH---ETVIRSIGVSEIIRPEQDYAATYASQSLLGDLFQRWYQVTETHHLYK 150 L+ S S ++ + S + P YAAT + L+ + HLY Sbjct: 121 LLYASSSSVYGLNRKMPFST-DDSVDHPVSLYAATKKANELMAHTY---------SHLYG 170 Query: 151 IKTPG 155 + G Sbjct: 171 LPATG 175
>PF07328#T-DNA border endonuclease VirD1 Length = 144 Score = 33.9 bits (77), Expect = 5e-04 Identities = 21/80 (26%), Positives = 26/80 (32%), Gaps = 11/80 (13%) Query: 345 DAKTRRNSTDLDDIFLAHIGGMDAFARALMCAAAIIEQSDYTKMRAERYASFDGGDGKAF 404 DAKT L D+ A I G+ + AA Y AER G Sbjct: 64 DAKTVEL---LRDMSRA-IAGVATNINQIAKAANRTHDPAYHSFMAERKVL-----GLEL 114 Query: 405 EDGKLTLEDLRTIALR--DG 422 L L ++ R DG Sbjct: 115 SKLSAVLAPLMEVSRRRSDG 134
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 33.3 bits (76), Expect = 0.002 Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 9/126 (7%) Query: 318 LLSGFQQFVGINVVLYYAPEIFKTMGAATDAALLQQIVVGAVNLSFTVLAIFT---VDKF 374 L + VGI +++ P + + + + D I++ L A D+F Sbjct: 11 LSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRF 70 Query: 375 GRRPLMIIGALVMAVSMIILGTTFYTHSVGIGSLVCMLVYTAGFAMSWGPVCWVLLAEIF 434 GRRP++++ AV I+ T + + IG +V AG + G V +A+I Sbjct: 71 GRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIV------AGITGATGAVAGAYIADIT 124 Query: 435 PNSIRS 440 R+ Sbjct: 125 DGDERA 130 Score = 32.5 bits (74), Expect = 0.004 Identities = 39/168 (23%), Positives = 65/168 (38%), Gaps = 23/168 (13%) Query: 1 MKNNNSYIFGITLVATLGGLLFGYDTAVISGTVESLRKFFIEPYGLPLDQANSLEGFVVS 60 MK N I ++ VA L + G V+ G + L + + + G +++ Sbjct: 1 MKPNRPLIVILSTVA-LDAVGIGLIMPVLPGLLRDL---------VHSNDVTAHYGILLA 50 Query: 61 SALIGCILGASFAGWVSQRYGRKPTLIVASILFLLSAIGSAWPEFGLGLPGSGDHTYMYL 120 + A G +S R+GR+P L L+S G+A + L Sbjct: 51 LYALMQFACAPVLGALSDRFGRRPVL-------LVSLAGAAVDYAIMAT----APFLWVL 99 Query: 121 FVAYRILGGIGVGLASMVSPMYIAEVAPADRRGNLVSWNQFAIIFGML 168 ++ RI+ GI G V+ YIA++ D R + FGM+ Sbjct: 100 YIG-RIVAGI-TGATGAVAGAYIADITDGDERARHFGFMSACFGFGMV 145
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 25.9 bits (57), Expect = 0.028 Identities = 5/28 (17%), Positives = 13/28 (46%) Query: 24 AAKQVGCTYKEMYRRMKRVGLIDKYILR 51 AA +G + ++++ +G+ R Sbjct: 455 AADLLGLNRNTLRKKIRELGVSVYRSSR 482
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.1 bits (62), Expect = 0.029 Identities = 6/34 (17%), Positives = 18/34 (52%) Query: 7 IIIAGPNGSGKTSITSRIIKHDWMEDSIYINPDN 40 +++ G G GK+++ + ++ D+ D+ + Sbjct: 599 VVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTG 632
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 32.6 bits (74), Expect = 0.015 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 7/68 (10%) Query: 416 EGNPYGNAKLNISVDAKRHKNS------SFFGNIKANIDEFEYKKYKYEDIQLSGNFKKN 469 E + +G K +I++ S +F G + DE +Y+KYK++ I + N + Sbjct: 189 EISSFGQLKQSITLPPHLDTGSSNFALHTFRGAAYSTPDE-KYEKYKFDTIADNENLNIS 247 Query: 470 SFDGMVQV 477 S G V + Sbjct: 248 SKGGWVAM 255
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 39.5 bits (92), Expect = 2e-06 Identities = 30/140 (21%), Positives = 53/140 (37%), Gaps = 17/140 (12%) Query: 21 GEMIKSFDCGDADLNDFILREAPFYQEALLTTTYVARVNNDILAYFSLANDRVSLGDFDS 80 G MI +F+ G + P++++ V+ V + A F + +G Sbjct: 24 GRMIPAFENGVWTYTE-ERFSKPYFKQYEDDDMDVSYVEEEGKAAFLYYLENNCIGRIKI 82 Query: 81 KTEFNRFRKHRFVNEKRLKSYPVVKICRFAVNHCYAGSGIGTILMDFIKVYFLQNNKTGC 140 ++ +N + I AV Y G+GT L+ + +N+ G Sbjct: 83 RSNWNGY----------------ALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGL 126 Query: 141 RFVTVDAYLAAISFYEKNHF 160 T D ++A FY K+HF Sbjct: 127 MLETQDINISACHFYAKHHF 146
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 34.0 bits (78), Expect = 5e-04 Identities = 26/140 (18%), Positives = 54/140 (38%), Gaps = 18/140 (12%) Query: 23 QLQTMMTEIDKIKTLRGELPLEVQDLEDEIAGLETRLQNYQSEIQDYE----------SA 72 Q T + + + + E + I E + +S + D+ A Sbjct: 194 QFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHA 253 Query: 73 VVEQKHRITESTGLIERYKSQLDNVRNNREFDNLSKEIEFQGLEIEFSEKKIREFGEAIN 132 V+EQ+++ E+ + YKSQL+ + + + LS + E+Q + F + + + + Sbjct: 254 VLEQENKYVEAVNELRVYKSQLEQIES----EILSAKEEYQLVTQLFKNEILDKLRQT-- 307 Query: 133 HKKEEIAQLTERLDGRKADL 152 + I LT L + Sbjct: 308 --TDNIGLLTLELAKNEERQ 325
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 48.9 bits (116), Expect = 7e-08 Identities = 37/238 (15%), Positives = 72/238 (30%), Gaps = 30/238 (12%) Query: 52 QQAEKEKEKEAKKAEKQTKAKKPSKTAAAKAPKAESKPKAVKAEAAEVAAPKATQPVEEK 111 + + ++E+K EK + ++T A A+ VKA ++ +E Sbjct: 1038 ETVAENSKQESKTVEKNE--QDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKET 1095 Query: 112 QAAVVAEKKEQ-PERKKRVRIEKKEKVAGAVAPANQTDEVKVSKTPQTVTTEVVVEKPLL 170 Q E E K +V EK ++ P + + +TV + + Sbjct: 1096 QTTETKETATVEKEEKAKVETEKTQE-----VPKVTSQVSPKQEQSETVQPQAEPAREND 1150 Query: 171 PPVVVE--GAPEELPVVETAP--VAPASPAEPVVEKAS--------EVPAAEAPAANEPK 218 P V ++ + P ++ +PV E + E P PA +P Sbjct: 1151 PTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPT 1210 Query: 219 RVVFRHPDTKSVLDQLFPFSPSPAKQEKAAPQQPEPQAAPQPQQQNTPRQNNNNRQNN 276 K+ + ++ P EP + + + N Sbjct: 1211 VNSESSNKPKN----------RHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTN 1258 Score = 43.5 bits (102), Expect = 3e-06 Identities = 43/257 (16%), Positives = 76/257 (29%), Gaps = 12/257 (4%) Query: 43 DEQAISYAGQQAEKEKEKEAKKAEKQTKAKKPSKTAAAKAPKAESKPKAVKAEAAEVAAP 102 + + Q E + K + T+ K+ + + K E++ + +P Sbjct: 1072 AKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSP 1131 Query: 103 KATQPVEEKQAAVVAEKKEQPERKKRVRIEKKEKVAGAVAPANQTDEVKVSKTPQTVTTE 162 K Q + A + E V I++ + A Q + S Q VT Sbjct: 1132 KQEQSETVQPQA-----EPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTES 1186 Query: 163 VVVEKPLLPPVVVEGAPEELPVVETAPVAPASPAEPVVEKASEVPAAEAPAANEPKRVVF 222 V PE T P S + + P EP Sbjct: 1187 TTVNTGNSVVEN----PENTTPATTQPTV-NSESSNKPKNRHRRSVRSVPHNVEPATTSS 1241 Query: 223 RHPDTKSVLDQLFPFSPSPAKQEKAAPQQPEPQAAPQPQQQNTPRQNNNNRQNNQNNNHN 282 T ++ D + + +A Q Q + + NN Q N + Sbjct: 1242 NDRSTVALCDLTSTNTNAVLSDARAKAQFVALNVGKAVSQHISQLEMNNEGQYNVWV--S 1299 Query: 283 NQRNNNNNNASQEKQYE 299 N N N ++SQ +++ Sbjct: 1300 NTSMNKNYSSSQYRRFS 1316 Score = 32.0 bits (72), Expect = 0.010 Identities = 21/134 (15%), Positives = 38/134 (28%), Gaps = 6/134 (4%) Query: 141 VAPANQTDEVKVSKTPQTVTTEVVVEKPLLPPVVVEGAPEELPVVETAPVAPASPAEPVV 200 V NQT + TP + +V + +E PV P APA+P+E Sbjct: 985 VEKRNQTVDTTNITTPNNIQADVPSVPSNNEEI---ARVDEAPV---PPPAPATPSETTE 1038 Query: 201 EKASEVPAAEAPAANEPKRVVFRHPDTKSVLDQLFPFSPSPAKQEKAAPQQPEPQAAPQP 260 A + + V + + + + A E + Sbjct: 1039 TVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTT 1098 Query: 261 QQQNTPRQNNNNRQ 274 + + T + Sbjct: 1099 ETKETATVEKEEKA 1112
>PF06580#Sensor histidine kinase Length = 349 Score = 33.7 bits (77), Expect = 0.001 Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 18/103 (17%) Query: 276 LLQ-LVNNLVNNAIKNTKKGSITMGYKALEDGRLNFYVKDTGQGIAEEQLQNLFNRFVKV 334 L+Q LV N + + I +G + ++G + V++TG + Sbjct: 259 LVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNT----------- 307 Query: 335 NDYVEGIGLGLA-ICKGLVTKMGG--SIRVESQLGEGSTFSFI 374 E G GL + + L G I++ + G+ + I Sbjct: 308 ---KESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLI 347
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 500 bits (1290), Expect = e-178 Identities = 179/480 (37%), Positives = 267/480 (55%), Gaps = 36/480 (7%) Query: 2 KAKIVVADDEPRIRKMIARLLTDEGYDVMPVENGREAVEALLSFQPDVILLDQQMPVLTG 61 A I+VADD+ IR ++ + L+ GYDV N + + D+++ D MP Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 62 VEALEEIRRISPTQVVLFVTAFGSISLAVDAVKKGAYDFIEKPFDNDKLLLTVKRAVEHS 121 + L I++ P VL ++A + A+ A +KGAYD++ KPFD +L+ + RA+ Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122 Query: 122 RMKGEISTLKKTLGEKRS--NVIGENTGLKQVMAQVLRVAETNATVLIHGESGTRKELIA 179 + K + + ++G + ++++ + R+ +T+ T++I GESGT KEL+A Sbjct: 123 K-----RRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVA 177 Query: 180 RAVHHNSLRANGPFVAINCGAIPLTLMESELFGHERGAFTDAKEAKAGTFERANGGTLFL 239 RA+H R NGPFVAIN AIP L+ESELFGHE+GAFT A+ G FE+A GGTLFL Sbjct: 178 RALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFL 237 Query: 240 DEVGELPLDAQVKLLRVLEERKITRIGGKKAIPVDVRIVAATNRNLDDEVKGGHFRLDLL 299 DE+G++P+DAQ +LLRVL++ + T +GG+ I DVRIVAATN++L + G FR DL Sbjct: 238 DEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLY 297 Query: 300 YRLNVFTLILPPLRERKEDIPLLANFFIRKYNQALSLDVQSITPEAVKLLSSYDWPGNVR 359 YRLNV L LPPLR+R EDIP L F+++ + LDV+ EA++L+ ++ WPGNVR Sbjct: 298 YRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEK-EGLDVKRFDQEALELMKAHPWPGNVR 356 Query: 360 DLENALQSAMILCTDGTIRPEHLPDRV----------KGYDSTEEATI------------ 397 +LEN ++ L I E + + + K + +I Sbjct: 357 ELENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYF 416 Query: 398 ------AGSGGSIREINAQMEKELILEALKKHNFNRTLTAEALAISRKTLFNKMKRYGLS 451 G + A+ME LIL AL N+ A+ L ++R TL K++ G+S Sbjct: 417 ASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGVS 476
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 39.1 bits (91), Expect = 1e-05 Identities = 21/120 (17%), Positives = 39/120 (32%), Gaps = 6/120 (5%) Query: 136 PLLSDMEMNNEARDFINRGIDLFPQNLVLKDEL------CYNREIEGDIDGAISICNELI 189 E F+ G + N + D L +N+ G + A + L Sbjct: 4 ETTDTQEYQLAMESFLKGGGTIAMLNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALC 63 Query: 190 DKNPYSHEYWFTLGRLYSIKLEFEKAIEAFDFALTCDDSDPELKILKAYCLYMNENYEKA 249 + Y ++ LG +++ AI ++ + D +P A CL +A Sbjct: 64 VLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEA 123 Score = 30.3 bits (68), Expect = 0.011 Identities = 25/103 (24%), Positives = 40/103 (38%), Gaps = 7/103 (6%) Query: 322 TLTKAVELFPNNVRILSLLALTYVENGEDKQAVETTERLFEVLDKGDYYQPEDFESLFHA 381 T+ E+ + + L LA ++G+ E ++F+ L D+Y F L Sbjct: 24 TIAMLNEISSDTLEQLYSLAFNQYQSGK----YEDAHKVFQALCVLDHYDSRFFLGL--- 76 Query: 382 GQYLYMKGDIDKAIKYYNKVYAVNPNLPFIHLHMAMAYLAKGD 424 G G D AI Y+ ++ P H A L KG+ Sbjct: 77 GACRQAMGQYDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGE 119
>PF06580#Sensor histidine kinase Length = 349 Score = 35.6 bits (82), Expect = 3e-04 Identities = 24/126 (19%), Positives = 46/126 (36%), Gaps = 19/126 (15%) Query: 315 ITININIEPADLIVYADEKLITQVVLNLLKNAMQ-AIGSGQPDGLIELKAYCNPDESVII 373 + I P ++ ++ Q L++N ++ I G I LK + + +V + Sbjct: 240 LQFENQINP-AIMDVQVPPMLVQT---LVENGIKHGIAQLPQGGKILLKGTKD-NGTVTL 294 Query: 374 EVSNNGPTIPPEEAEHIFVPFFTTKEGGSGIGLS-ISRQIMRLSGGSIALKSNPAINKTS 432 EV N G E +G GL + ++ L G +K + K + Sbjct: 295 EVENTGSLALKNTKE------------STGTGLQNVRERLQMLYGTEAQIKLSEKQGKVN 342 Query: 433 FILTFP 438 ++ P Sbjct: 343 AMVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 440 bits (1134), Expect = e-154 Identities = 148/484 (30%), Positives = 230/484 (47%), Gaps = 50/484 (10%) Query: 5 GTILVVDDNKGILTAVQMLLGTCFEKVITISTPNKIKTTLHNENVDVVLLDMNFSAGINT 64 TILV DD+ I T + L V S + + + D+V+ D+ Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMP----- 58 Query: 65 GNEGLFWLSEIKKEDPAVQVVLFTAYADIDLAVRGIKEGATDFVVKPWNNAKLLETLKTA 124 L IKK P + V++ +A A++ ++GA D++ KP++ +L+ + A Sbjct: 59 DENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRA 118 Query: 125 YDIRMANRKGVPHESSKQVISKESGMFWGESNAMQQLRNLIEKVAKTDANILITGENGTG 184 + R+ E Q + G S AMQ++ ++ ++ +TD ++ITGE+GTG Sbjct: 119 --LAEPKRRPSKLEDDSQ----DGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTG 172 Query: 185 KEMLAREIHMLSNRKKEAMVPVDMGAITETLFESELFGHMKGAFTDARADRPGKFEAANN 244 KE++AR +H R+ V ++M AI L ESELFGH KGAFT A+ G+FE A Sbjct: 173 KELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEG 232 Query: 245 GTLFLDEIGNLSYHLQAKLLTAIQRRSIVRVGSNTPIPVNIRLVCATNRDLQEMVQKELF 304 GTLFLDEIG++ Q +LL +Q+ VG TPI ++R+V ATN+DL++ + + LF Sbjct: 233 GTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLF 292 Query: 305 REDLLYRINTIHVEIPSLRERPEDIVPLTEIFLAKYCNIYGKSSMRLSADAKDKLKQQPW 364 REDL YR+N + + +P LR+R EDI L F+ + G R +A + +K PW Sbjct: 293 REDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKE-GLDVKRFDQEALELMKAHPW 351 Query: 365 FGNIRELEHTIEKAVIISEGETLDSSDFDFPRKKESPLKEAT------------------ 406 GN+RELE+ + + + + + + + E P Sbjct: 352 PGNVRELENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEEN 411 Query: 407 --------------------TLEEMEYNMIKNAMDKYNGNLSLVASQLGISRQTLYNKIK 446 L EMEY +I A+ GN A LG++R TL KI+ Sbjct: 412 MRQYFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIR 471 Query: 447 RYEL 450 + Sbjct: 472 ELGV 475
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 60.2 bits (146), Expect = 5e-12 Identities = 59/343 (17%), Positives = 112/343 (32%), Gaps = 96/343 (27%) Query: 22 GVLFLALVGWIIFGDHASTLKVDARGISIGEVTKEQFNDFVRVNGQVQPITVVQLSPEEG 81 G L +A + + G +V+ + G++T +G+ + I P E Sbjct: 66 GFLVIAFI-LSVLG------QVEIVATANGKLT---------HSGRSKEI-----KPIEN 104 Query: 82 GIVQEKVVEEGAQVKKGDVIIRLSNSSLDLQILDAEAQLAEKQ----------------- 124 IV+E +V+EG V+KGDV+++L+ + L ++ L + + Sbjct: 105 SIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNK 164 Query: 125 ------------NFLRNTQVAMEQDKLNNQL-----EKAQLDVDIARSR----------R 157 + +V + Q +K Q ++++ + R Sbjct: 165 LPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARIN 224 Query: 158 AYSQQ-----------KKLYDENLIAKEDYLKAKEDY-----ELATKKYDL-VVERLRQD 200 Y L + IAK L+ + Y EL K L +E Sbjct: 225 RYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILS 284 Query: 201 SISRTIQMD-----EMETSLANMRRNIQLVHERKE-------HLNVRSQIDGELGLLDV- 247 + + E+ L NI L+ +R+ + ++ L V Sbjct: 285 AKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVH 344 Query: 248 VLGQNVSAGLKIGQINDLSD-YKVEAMIDEHYIDRVKPGLDAD 289 G V+ + I D +V A++ I + G +A Sbjct: 345 TEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAI 387
>TYPE3OMGPROT#Type III secretion system outer membrane G protein family signature. Length = 607 Score = 34.5 bits (79), Expect = 8e-04 Identities = 25/135 (18%), Positives = 40/135 (29%), Gaps = 22/135 (16%) Query: 155 PFAHTNYFY---GEDLASNLTLTAEQQDLAFDVSKAVRDAVGPEFDIMIETHAMLNYRVA 211 + Y Y GE L LT D VS + D V +F+ + Sbjct: 30 DWLPIPYVYVAKGESLRDLLTDFGANYDATVVVSDKINDKVSGQFE----------HDNP 79 Query: 212 VKMAERLAKL-DITWYEE-------PAGPESSQTLRAMRERIPSDVAICVGERHY-TRFG 262 + +A L ++ WY + +S+ +R + RFG Sbjct: 80 QDFLQHIASLYNLVWYYDGNVLYIFKNSEVASRLIRLQESEAAELKQALQRSGIWEPRFG 139 Query: 263 IRSLLEKHVCDVIMP 277 R + V P Sbjct: 140 WRPDASNRLVYVSGP 154
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 78.9 bits (194), Expect = 2e-19 Identities = 61/256 (23%), Positives = 103/256 (40%), Gaps = 18/256 (7%) Query: 10 KVVLVTGVSSGIGLGTAIEFAKAGAHVAGCSRKEPGDPCAVAFRKAVEAEGVRALYRQA- 68 K+ +TG + GIG A A GAH+A D K V + A + +A Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAV------DYNPEKLEKVVSSLKAEARHAEAF 62 Query: 69 --DVTCPEDLEALVRETVGTFGRIDILVSSAGVNVFEGAEGCTEERWQYNLDLNLASHWR 126 DV ++ + G IDILV+ AGV ++E W+ +N + Sbjct: 63 PADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFN 122 Query: 127 LSKLCKPYLEKSGEGVILLMTSNHAFGTIPGCFPYSVTKTAITGLVRNLAIEWGP-AIRT 185 S+ Y+ G I+ + SN A Y+ +K A + L +E IR Sbjct: 123 ASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRC 182 Query: 186 VGVAPGFIDTAGNDT-WFDSFPDAEQERRR----TINLH-PVKRIGTVDEVGALCVYLAS 239 V+PG +T + W D + ++ + T P+K++ ++ ++L S Sbjct: 183 NIVSPGSTETDMQWSLWADE--NGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVS 240 Query: 240 PKARFISGTTILMDGG 255 +A I+ + +DGG Sbjct: 241 GQAGHITMHNLCVDGG 256
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 39.0 bits (91), Expect = 3e-05 Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 3/51 (5%) Query: 217 VVSPMNGYLKNLQVKEGDYVAVGQPLATISQNSRLVLRAEVSEKYYQYLPA 267 + N +K + VKEG+ V G L ++ L A+ + L A Sbjct: 99 IKPIENSIVKEIIVKEGESVRKGDVLLKLTA---LGAEADTLKTQSSLLQA 146
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 679 bits (1753), Expect = 0.0 Identities = 236/1043 (22%), Positives = 443/1043 (42%), Gaps = 42/1043 (4%) Query: 8 YSLHNRLVVLICALLLMIAGTYTAFHTDVDVFPDLNAPTVVIMTEANGMAPEEVERLVTF 67 + + + + A++LM+AG V +P + P V + G + V+ VT Sbjct: 4 FFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVTQ 63 Query: 68 PVETAVNGAMDVRRVRSSST-TGFSVVWVEFDWGTDIYRARQIVSEKLAVVSESLPENVG 126 +E +NG ++ + S+S G + + F GTD A+ V KL + + LP+ V Sbjct: 64 VIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEVQ 123 Query: 127 KPTLGPQSSILGEMMIIGLTADS--TSLLDLRTIADWTIRPRLLSTGGVAQVAVIGGDIK 184 + + + S +M+ G +D+ T+ D+ ++ L GV V + G Sbjct: 124 QQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGAQ-Y 182 Query: 185 EYQILLDPARMKHYGVGLDEVLTVCRNMNRNANGG------VLYEYDNEYIIRGVLSTPK 238 +I LD + Y + +V+ + N G L I Sbjct: 183 AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFKN 242 Query: 239 VEELAKGVIKTV-DGFPVMLENVATVKIGSKSPKLGTASERGKHAVLITVTKQPNTSTID 297 EE K ++ DG V L++VA V++G ++ A GK A + + + +D Sbjct: 243 PEEFGKVTLRVNSDGSVVRLKDVARVELGGENYN-VIARINGKPAAGLGIKLATGANALD 301 Query: 298 LTNKLDGIVADLQKNLPTDVNVSTDIFRQSRFIDSSINNVKNSLFEGSFFVVIVLFLFLM 357 + +A+LQ P + V + + F+ SI+ V +LFE V +V++LFL Sbjct: 302 TAKAIKAKLAELQPFFPQGMKVLY-PYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360 Query: 358 NIRTTVISLVALPLSLLVSILVLHYMGMTINTMSLGGMAIAIGSLVDDAIVDVENVYKRI 417 N+R T+I +A+P+ LL + +L G +INT+++ GM +AIG LVDDAIV VENV + + Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 Query: 418 RENRILPPEERRSVLEVVYDASREVRMPILNSTLIIVVSFVPLFFLHGMEGRMLVPLGIA 477 E+++ P E + +++ ++ +++ F+P+ F G G + I Sbjct: 421 MEDKLPP-------KEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSIT 473 Query: 478 FIVALFASTVVALTLTPVLCSYLLGNKSTDKKIEKEAWVA------RKLKEVYASALKVA 531 + A+ S +VAL LTP LC+ LL S + K + Y +++ Sbjct: 474 IVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKI 533 Query: 532 LAHKKIVLGSTVGLFLVALGIFFTLGRSFLPPFNEGSFTINVSSLPGISLDESDRMGHRA 591 L L + + +F L SFLP ++G F + G + + + ++ + Sbjct: 534 LGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQV 593 Query: 592 EELLMQVPEIQTVARKTGRAELDEHALGVNVSEIEAPFV-LKDRSR-----ETVMNDVRK 645 + ++ E V N ++R+ E V++ + Sbjct: 594 TDYYLKN-EKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKM 652 Query: 646 KLSTISGANIEIGQPISHRIDAMLSGTEANIA-IKLFGTDLNRLFTIGNDIKNSI-QSIP 703 +L I + I + + T + I G + L N + Q Sbjct: 653 ELGKIRDGFVIPFNM--PAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPA 710 Query: 704 GLVDLKVEQQIERPQLTITPKRELMAKYGVSLPEFEEYINVMLGGEVVSQVYDDGKTFDL 763 LV ++ + Q + +E GVSL + + I+ LGG V+ D G+ L Sbjct: 711 SLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKL 770 Query: 764 TVKTSDESRATMEDIRNLMI-DAGGKKIPLSYIAEVRSVTGPNTINRENVQRKLVISANV 822 V+ + R ED+ L + A G+ +P S V G + R N + I Sbjct: 771 YVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEA 830 Query: 823 SERDLRSVVNDIQNKIGTSIKLPEGYHIEYGGQFESEQAASRTLLLTSLMSLLVIFLLLY 882 + + + + KLP G ++ G E+ + +S +V+FL L Sbjct: 831 APGTSSGDAMALMENLAS--KLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLA 888 Query: 883 NEFKNAKESGVILLNLPLALIGGVFILWLTSGEISIPAIIGFISLFGIATRNGMLLISHY 942 +++ ++L +PL ++G + L + + + ++G ++ G++ +N +L++ Sbjct: 889 ALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFA 948 Query: 943 AQL-RSEGFSVYDTVIHGSLDRLNPILMTALSSALALIPLALNGDLPGNEIQSPMATVIL 1001 L EG V + + RL PILMT+L+ L ++PLA++ G+ Q+ + ++ Sbjct: 949 KDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNG-AGSGAQNAVGIGVM 1007 Query: 1002 GGLLTSTFLNGFIIPIVYLLMNK 1024 GG++++T L F +P+ ++++ + Sbjct: 1008 GGMVSATLLAIFFVPVFFVVIRR 1030
>PHAGEIV#Gene IV protein signature. Length = 426 Score = 29.5 bits (66), Expect = 0.042 Identities = 21/81 (25%), Positives = 30/81 (37%), Gaps = 13/81 (16%) Query: 262 ATAAAKAALTALLSKEEQTAASITLPSGEIITLPVTATEWDSDSATCSVIKDAGDDPDVT 321 T A L S S + +G+++ L V A + +S S SV P + Sbjct: 224 GTVAGGVNTDRLTSVLSSAGGSFGIFNGDVLGLSVRALKTNSHSKILSV-------PRIL 276 Query: 322 -----NGSMIVA-NVAFSTAS 336 GS+ V NV F T Sbjct: 277 TLSGQKGSISVGQNVPFITGR 297
>SALVRPPROT#Salmonella virulence-associated 28kDa protein signature. Length = 241 Score = 32.8 bits (74), Expect = 0.001 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 18/67 (26%) Query: 246 IHDWNSNDMESYLRSGRIT-------------DYSAYAASFYKKNCPLTRRERIECLEKE 292 + W DME ++ R++ + S Y+ASF K R+ IECLE Sbjct: 132 VDKWKVTDMEKVVQQARVSLGAQFTLYIKPDQENSQYSASFLHKT-----RQFIECLESR 186 Query: 293 FKQNGLL 299 +NG++ Sbjct: 187 LSENGVI 193
>FLGFLGJ#Flagellar protein FlgJ signature. Length = 313 Score = 53.6 bits (128), Expect = 2e-11 Identities = 42/142 (29%), Positives = 65/142 (45%), Gaps = 24/142 (16%) Query: 2 DKQAFFKQFLPAAQAAGEHFKLNPDIILAQAAIESGWGESVLCR----TYHNYFGLTGYG 57 D +AF Q AQ A + + +ILAQAA+ESGWG+ + R +N FG+ Sbjct: 148 DSKAFLAQLSLPAQLASQQSGVPHHLILAQAALESGWGQRQIRRENGEPSYNLFGV---- 203 Query: 58 QSTLYWKGAK----TLRIEDG--GISHLQFRIYESDQQSFFDFARLIR-----TVYPTAA 106 +++ WKG T E+G +FR+Y S ++ D+ L+ TAA Sbjct: 204 KASGNWKGPVTEITTTEYENGEAKKVKAKFRVYSSYLEALSDYVGLLTRNPRYAAVTTAA 263 Query: 107 -----AISIYPEAYAKEIAYSR 123 A ++ YA + Y+R Sbjct: 264 SAEQGAQALQDAGYATDPHYAR 285
>BINARYTOXINB#Binary toxin B family signature. Length = 764 Score = 24.6 bits (53), Expect = 0.048 Identities = 12/35 (34%), Positives = 20/35 (57%) Query: 13 KVRSYGLTELGLLYNPSLQPDSAAKAIKRWIAFNK 47 KV Y +T+ + NPS D++ IK+ + F+K Sbjct: 724 KVNVYAVTKENTIINPSENGDTSTNGIKKILIFSK 758
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 123 bits (310), Expect = 7e-35 Identities = 75/341 (21%), Positives = 125/341 (36%), Gaps = 49/341 (14%) Query: 5 LVCGAGGFIGSHMVKRLKNEGYWVKGVD---------LKYPEFSPTEADDFMI--GDLRD 53 LV GA GFIG H+ KRL G+ V G+D LK F DL D Sbjct: 4 LVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDLAD 63 Query: 54 TDVCNRAV-DRKFDEIYQFAADMGGAGFVFTGENDADIMHNSVMCNIHMMDVAYKRNAGR 112 + F+ ++ ++ EN +++ +++++ Sbjct: 64 REGMTDLFASGHFERVFISPHR---LAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 113 IFYSSSACIYPERNQMDALHPTTSEDSAYPAGPDSDYGWEKLFSERMYMAYHRNKGLDVR 172 + Y+SS+ +Y +M P +++DS P S Y K +E M Y GL Sbjct: 121 LLYASSSSVYGLNRKM----PFSTDDSV--DHPVSLYAATKKANELMAHTYSHLYGLPAT 174 Query: 173 IARFHNIFGPEGTWEGGR-EKSPAAFCRKVAETPDGGTIEMWGDGNQTRSFLYIDECLEG 231 RF ++GP W GR + + F + + E G +I+++ G R F YID+ E Sbjct: 175 GLRFFTVYGP---W--GRPDMALFKFTKAMLE---GKSIDVYNYGKMKRDFTYIDDIAEA 226 Query: 232 VRRLMSQDAFMGP------------------VNIGSDEMISINGLAGMVMEIAGKNLDIK 273 + RL NIG+ + + + + G Sbjct: 227 IIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKN 286 Query: 274 HIPGPLGVVGRN-SDNHLIKEKLGWAPNWPLSKGMALTYRW 313 +P G V +D + E +G+ P + G+ W Sbjct: 287 MLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNW 327
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 86.7 bits (215), Expect = 3e-26 Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 1/84 (1%) Query: 2 NKADLVNELAEKMGISQNQSRKFINTFQAILTERVKE-DEIILQGFGTFKAWEQAERTGR 60 NK DL+ ++AE +++ S ++ + ++ + + +++ L GFG F+ E+A R GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGR 62 Query: 61 NPRTGISCKIPARRSVKFKPGKFL 84 NP+TG KI A + FK GK L Sbjct: 63 NPQTGEEIKIKASKVPAFKAGKAL 86
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 26.8 bits (59), Expect = 0.040 Identities = 12/88 (13%), Positives = 31/88 (35%), Gaps = 14/88 (15%) Query: 67 IELRSTGAAVGTVDLYDFEPHHRRAGIGILLEPVYQGNGLATEAMNVLMDYAFSFLKLHQ 126 I++RS ++ +R+ G+G L ++ +++A Sbjct: 80 IKIRSNWNGYALIEDIAVAKDYRKKGVGTAL-------------LHKAIEWAKE-NHFCG 125 Query: 127 LYVHIPVDNEASKALFTRCGFTVTGIMT 154 L + N ++ + + F + + T Sbjct: 126 LMLETQDINISACHFYAKHHFIIGAVDT 153
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 26.6 bits (59), Expect = 0.015 Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 2/49 (4%) Query: 37 NK--LCDLIAVRSTAFIGDVMLVIEGLLSVMEERLEEGDVIQMGRLGNF 83 NK L +A + D ++ + S + L +G+ +Q+ GNF Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNF 51
>FLGFLGJ#Flagellar protein FlgJ signature. Length = 313 Score = 62.4 bits (151), Expect = 2e-14 Identities = 42/145 (28%), Positives = 72/145 (49%), Gaps = 24/145 (16%) Query: 4 QEFIKQYLFPAQKAGECFGINPIVILAQSAIETGWGESTLAKEH----NNFFGITAYGRP 59 + F+ Q PAQ A + G+ +ILAQ+A+E+GWG+ + +E+ N FG+ A Sbjct: 150 KAFLAQLSLPAQLASQQSGVPHHLILAQAALESGWGQRQIRRENGEPSYNLFGVKA---- 205 Query: 60 NAFWKGKKTDLS----ENG--GHVSLWFRTYESAKDSFMDFARLI-----HTAYPVAAS- 107 + WKG T+++ ENG V FR Y S ++ D+ L+ + A AAS Sbjct: 206 SGNWKGPVTEITTTEYENGEAKKVKAKFRVYSSYLEALSDYVGLLTRNPRYAAVTTAASA 265 Query: 108 ----LSAHPSAYAKEIAYSKYISEV 128 + + YA + Y++ ++ + Sbjct: 266 EQGAQALQDAGYATDPHYARKLTNM 290
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 92.2 bits (229), Expect = 3e-23 Identities = 74/348 (21%), Positives = 142/348 (40%), Gaps = 50/348 (14%) Query: 28 TILVTGATGLIGSVLIKCLLHLNQVTNSGIKVVAV-------------ARNKQKAYDLFG 74 LVTGA G IG + K LL +G +VV + AR + A F Sbjct: 2 KYLVTGAAGFIGFHVSKRLL------EAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQ 55 Query: 75 DYEIQWIWQDMTEPLDLSTWDIHYIIHCASPTASQFYVNSPVETINTAFIGTRQLLEYAS 134 ++I ++ L ++ + A ++ + +P ++ G +LE Sbjct: 56 FHKIDLADREGMTDL-FASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILE-GC 113 Query: 135 QHPSMRGMVYLSSLESYGTINDDSVPVTEDVNGYINPIDVRSSYSLGKRMVECLCHAYAS 194 +H ++ ++Y SS YG + +P + D + +P+ S Y+ K+ E + H Y+ Sbjct: 114 RHNKIQHLLYASSSSVYGL--NRKMPFSTD-DSVDHPV---SLYAATKKANELMAHTYSH 167 Query: 195 EYHVPVVMARLTQVFGAGVSRQDTRVFAQFAKSVISGQDIVMHTSGESAKPYCY---TID 251 Y +P R V+G R D +F +F K+++ G+ I ++ G+ + + Y + Sbjct: 168 LYGLPATGLRFFTVYGPW-GRPDMALF-KFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAE 225 Query: 252 AIIALFYLLLKGEPGKAYNVATPNTYISIYDLAHL----------LVEKFNKNCHVVIEA 301 AII L ++ + TP I+ Y + ++ ++ + IEA Sbjct: 226 AIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALED--ALGIEA 283 Query: 302 RDNM-----GYAPVTKLNLSTEKLEALGWKPFFKLEEMFDRLINYYKS 344 + NM G T + E +G+ P +++ +N+Y+ Sbjct: 284 KKNMLPLQPGDVLETSADTKALY-EVIGFTPETTVKDGVKNFVNWYRD 330
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 50.6 bits (121), Expect = 4e-09 Identities = 29/168 (17%), Positives = 56/168 (33%), Gaps = 28/168 (16%) Query: 8 WIRLIGIVGCTMWMASCKQAPDAQMKSSYSIMKVAPADKELT-SSYSATIRGRQDIDIYP 66 + + +V + + + VA A+ +LT S S I+ P Sbjct: 62 YFIMGFLVIAFILSVLGQ------------VEIVATANGKLTHSGRSKEIK--------P 101 Query: 67 QVSGTIEKLYVTEGQKVRRGQVLFVIDQVPYRAALK-------TATANVEAARAALATAE 119 + ++++ V EG+ VR+G VL + + A A + + E Sbjct: 102 IENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIE 161 Query: 120 LTYNSNKELNAQKVVSDFSLQTAENTFLSAKAQLAQAEAQELNARNNL 167 L +L + + S + K Q + + Q+ NL Sbjct: 162 LNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNL 209 Score = 37.1 bits (86), Expect = 8e-05 Identities = 12/104 (11%), Positives = 35/104 (33%), Gaps = 12/104 (11%) Query: 97 YRAALKTATANVEAARAALATAELTYNSNKELNAQKVVSDFSLQTAENTFLSAKAQLAQA 156 L+ + +E + + +A+ Y +L Q ++ + + + Sbjct: 264 AVNELRVYKSQLEQIESEILSAKEEY----QLVTQLFKNEILDKLRQ-----TTDNIGLL 314 Query: 157 EAQELNARNNLSYTEVKSPCDGVVGALP-YRAGALVSASIPQPL 199 + + +++P V L + G +V+ + + L Sbjct: 315 TLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTA--ETL 356
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 861 bits (2226), Expect = 0.0 Identities = 375/1031 (36%), Positives = 582/1031 (56%), Gaps = 13/1031 (1%) Query: 4 NIFIKRPVMAICISVLILVIGLISLFTLPVEQYPDIAPPTVYVTASYTGADADAVMNSVV 63 N FI+RP+ A +++++++ G +++ LPV QYP IAPP V V+A+Y GADA V ++V Sbjct: 3 NFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVT 62 Query: 64 MPLEESINGVENMMYISSTATNAGSAVIQVYFKQGTDPDMAAVNVQNRVSKAQGLLPAEV 123 +E+++NG++N+MY+SST+ +AGS I + F+ GTDPD+A V VQN++ A LLP EV Sbjct: 63 QVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEV 122 Query: 124 TRIGVTTQKRQTSFLQIGAMVCTDGRYDQTFLANYLDINVIPQIKRIEGVGDVMELGDTY 183 + G++ +K +S+L + V + Q +++Y+ NV + R+ GVGDV G Y Sbjct: 123 QQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGAQY 182 Query: 184 SMRIWLRPERMAQYGLVPSDVTAVLGEQNIEAPTGSLGEN---SENVFQFTMKYRGRLKS 240 +MRIWL + + +Y L P DV L QN + G LG ++ + R K+ Sbjct: 183 AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFKN 242 Query: 241 VEEFQNTVIRSQSDGSVLRLKDVANVELGTLTYSFRSEMDGKPAVLFMMFQTAGSNATAV 300 EEF +R SDGSV+RLKDVA VELG Y+ + ++GKPA + G+NA Sbjct: 243 PEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDT 302 Query: 301 NKQITAQMEQMEKSLPEGTEFVTMMSSNDFLFASIHNVVETLVIAIILVILVVYFFLQDL 360 K I A++ +++ P+G + + + F+ SIH VV+TL AI+LV LV+Y FLQ++ Sbjct: 303 AKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNM 362 Query: 361 KSTLIPSISIIVSLVGTFACLVAAGFSLNILTLFALVLAIGTVVDDAIVVVEAVQSKFDA 420 ++TLIP+I++ V L+GTFA L A G+S+N LT+F +VLAIG +VDDAIVVVE V+ Sbjct: 363 RATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMME 422 Query: 421 GYKSSYLATKDAMGDVTMAIVSCTCVFMAVFIPVTFMGGTSGVFYTQFGITMATAVGISM 480 AT+ +M + A+V V AVFIP+ F GG++G Y QF IT+ +A+ +S+ Sbjct: 423 DKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSV 482 Query: 481 ISALTLCPALCAIMMRPSDGTKSATSINGRVRAAYNASFNAVLGKYKKGVMFFIHHRWMV 540 + AL L PALCA +++P + G +N +F+ + Y V + Sbjct: 483 LVALILTPALCATLLKP--VSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRY 540 Query: 541 WTSLVATIVLLVYLMSTTKTGLVPQEDQGVIMVNVSTSPGSTLEETNKVMNKLEDIL--N 598 + +V L + +P+EDQGV + + G+T E T KV++++ D N Sbjct: 541 LLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKN 600 Query: 599 NTPEIEHYARVAGYGLMSGQGTSYGTIIVRLKDWSERKGKEHNSDAVAARLNAQFYGIKE 658 +E V G+ SGQ + G V LK W ER G E++++AV R + I++ Sbjct: 601 EKANVESVFTVNGFSF-SGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRD 659 Query: 659 AQIFSFQPAMIPGYGMGNSLELNLQDRTGGDMATFYNSSMQFLGALNQRP-EITMAYTSY 717 + F I G + L D+ G + Q LG Q P + + Sbjct: 660 GFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNG 719 Query: 718 AMNFPQISVDVDAAKCKRAGISPSTVLDALGSYCGGAYISNFNQFGKVYRVMMQASPEYR 777 + Q ++VD K + G+S S + + + GG Y+++F G+V ++ +QA ++R Sbjct: 720 LEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFR 779 Query: 778 LDQQSLDNMFVRN-GAEMAPISQFVTLTEVLGPETSNRFNLYSTITANVNPAEGYSSGEV 836 + + +D ++VR+ EM P S F T V G R+N ++ A G SSG+ Sbjct: 780 MLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDA 839 Query: 837 QKAIEEVAAQSLPAGYGYEYGGMAREEASSSGAQTVFIYAICIFLIYLILACLYESFLVP 896 +E +A++ LPAG GY++ GM+ +E SG Q + AI +++L LA LYES+ +P Sbjct: 840 MALMENLASK-LPAGIGYDWTGMSYQER-LSGNQAPALVAISFVVVFLCLAALYESWSIP 897 Query: 897 FAVIFSVPFGLMGSFLFAKIFGLENNIYLQTGVIMLIGLLAKTAILITEYAIERRRK-GM 955 +V+ VP G++G L A +F +N++Y G++ IGL AK AILI E+A + K G Sbjct: 898 VSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGK 957 Query: 956 GIVESAYSAAQVRLRPILMTVLTMIFGMLPLMFSSGAGANGNSSLGTGVVGGMAVGTLAL 1015 G+VE+ A ++RLRPILMT L I G+LPL S+GAG+ +++G GV+GGM TL Sbjct: 958 GVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLA 1017 Query: 1016 LFVVPVFYIIF 1026 +F VPVF+++ Sbjct: 1018 IFFVPVFFVVI 1028 Score = 70.3 bits (172), Expect = 3e-14 Identities = 77/511 (15%), Positives = 161/511 (31%), Gaps = 29/511 (5%) Query: 4 NIFIKRPVMAICISVLILVIGLISLFT-LPVEQYPDI----------APPTVYVTASYTG 52 + + I LI V G++ LF LP P+ P T T Sbjct: 531 GKILGSTGRYLLIYALI-VAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGA--TQERTQ 587 Query: 53 ADADAVMNSVV---MPLEESINGVENMMYISSTATNAGSAVIQVY-FKQGTDPDMAAVNV 108 D V + + ES+ V + S A NAG A + + +++ + +A V Sbjct: 588 KVLDQVTDYYLKNEKANVESVFTVNGFSF-SGQAQNAGMAFVSLKPWEERNGDENSAEAV 646 Query: 109 QNRVSKAQGLLP-AEVTRIGVTTQKRQTSFLQIGAMVCTDGRYDQTFLANYLDINVIPQI 167 +R G + V + + + L + + Sbjct: 647 IHRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAA 706 Query: 168 KRIEGVGDVM--ELGDTYSMRIWLRPERMAQYGLVPSDVTAVLGEQNIEAPTGSLGENSE 225 + + V L DT ++ + E+ G+ SD+ + + Sbjct: 707 QHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGR 766 Query: 226 NVFQFTMKYRGRLKSVEEFQNTVIRSQSDGSVLRLKDVANVELGTLTYSFRSEMDGKPAV 285 + E+ +RS ++G ++ + +G P++ Sbjct: 767 VKKLYVQADAKFRMLPEDVDKLYVRS-ANGEMVPFSAFTTSHWVYGSPRLERY-NGLPSM 824 Query: 286 LFMMFQTAGSNATAVNKQITAQMEQMEKSLPEGTEFVTMMSSNDFLFASIHNVVETLVIA 345 G+++ A ME + LP G + S + + + I+ Sbjct: 825 EIQGEAAPGTSSG----DAMALMENLASKLPAGIGYDWTGMSYQERLSG-NQAPALVAIS 879 Query: 346 IILVILVVYFFLQDLKSTLIPSISIIVSLVGTFACLVAAGFSLNILTLFALVLAIGTVVD 405 ++V L + + + + + + +VG ++ + L+ IG Sbjct: 880 FVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAK 939 Query: 406 DAIVVVEAVQSKFDAGYKSSYLATKDAMGDVTMAIVSCTCVFMAVFIPVTFMGGTSGVFY 465 +AI++VE + + K AT A+ I+ + F+ +P+ G Sbjct: 940 NAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQ 999 Query: 466 TQFGITMATAVGISMISALTLCPALCAIMMR 496 GI + + + + A+ P ++ R Sbjct: 1000 NAVGIGVMGGMVSATLLAIFFVPVFFVVIRR 1030
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 30.6 bits (69), Expect = 0.018 Identities = 11/57 (19%), Positives = 26/57 (45%), Gaps = 3/57 (5%) Query: 160 RKEYQRYLSLKRELKDLTEKADQNRQEEDY---IRFQLEQLTDAHLVAGEQEELEQE 213 + Y++Y LK+ + E+ QN +E +Y + + + + ++EL + Sbjct: 384 QSYYKKYNKLKKSEEAANEQLLQNEEELNYLYSVLTNINNADNYDEIEEIKKELIET 440
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 32.3 bits (73), Expect = 0.002 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%) Query: 177 DNGQWRPDNHNRPNNNQHFNKPSRPGN-DRYDKDKRPDNRRDRDRD 221 D+ PDN + PNN + N P P N D + PDN + + D Sbjct: 286 DDQPNNPDNPDNPNNPDNPNNPDEPNNPDNPNNPDNPDNGDNNNSD 331 Score = 28.4 bits (63), Expect = 0.030 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 4/43 (9%) Query: 171 DRPGHHDNGQWRPDNHNRPNNNQHFNKPSRPGNDRYDKDKRPD 213 D P + DN P+N + PNN + N P P N + PD Sbjct: 296 DNPNNPDN----PNNPDEPNNPDNPNNPDNPDNGDNNNSDNPD 334
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 82.0 bits (203), Expect = 2e-24 Identities = 28/84 (33%), Positives = 40/84 (47%) Query: 2 NKADFISKLAVEMNISQQQSREFMKAFQVVLTEAMKQDNPVMLQGFGTFTPWSQKERIGR 61 NK D I+K+A ++++ S + A ++ + + V L GFG F + R GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGR 62 Query: 62 NPHTGISCAIPARTSVKFKPGKFL 85 NP TG I A FK GK L Sbjct: 63 NPQTGEEIKIKASKVPAFKAGKAL 86
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 32.5 bits (74), Expect = 7e-04 Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 9/62 (14%) Query: 95 LSRIQSVAVG---------RQVITAQMPGVILKVNVKPGDEVKAGTPLCVLVAMKMENEI 145 L +++ VA + I ++ ++ VK G+ V+ G L L A+ E + Sbjct: 77 LGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADT 136 Query: 146 RS 147 Sbjct: 137 LK 138 Score = 27.1 bits (60), Expect = 0.040 Identities = 9/28 (32%), Positives = 17/28 (60%) Query: 144 EIRSPIDGVVKEVYIENGDKVAVNDKML 171 EI+ + +VKE+ ++ G+ V D +L Sbjct: 98 EIKPIENSIVKEIIVKEGESVRKGDVLL 125
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 74.0 bits (182), Expect = 3e-21 Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 1/91 (1%) Query: 1 MKNK-ELITELSVKLGWTSKEVTEMLAAFGAVVGSKLADNDAVYLQGFGLFEVKKKAERI 59 M NK +LI +++ T K+ + A + V S LA + V L GFG FEV+++A R Sbjct: 1 MANKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARK 60 Query: 60 SVNPASGKRYLVPPKLVPVFKPGATLKSKLK 90 NP +G+ + VP FK G LK +K Sbjct: 61 GRNPQTGEEIKIKASKVPAFKAGKALKDAVK 91
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 45.5 bits (108), Expect = 1e-08 Identities = 21/86 (24%), Positives = 38/86 (44%) Query: 8 QDLAGLLAERTGKDRNSAEQFLREFIAIVSQGVFTDKVAKIKGLGSFKIVLVEKRESIHV 67 QDL +AE T + + + + VS + + ++ G G+F++ R+ + Sbjct: 5 QDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGRNP 64 Query: 68 NTGERFLIPAHYKFSFLPDKELRELV 93 TGE I A +F K L++ V Sbjct: 65 QTGEEIKIKASKVPAFKAGKALKDAV 90
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 29.0 bits (65), Expect = 0.031 Identities = 9/24 (37%), Positives = 13/24 (54%) Query: 119 DEINRAPAKVQSALLEAMQERQVT 142 DEI P Q+ LL +Q+ + T Sbjct: 238 DEIGDMPMDAQTRLLRVLQQGEYT 261
>NEISSPPORIN#Neisseria sp. porin signature. Length = 348 Score = 29.2 bits (65), Expect = 0.017 Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 7/89 (7%) Query: 25 FAGQYHSAFK--GRGMAFSEVREYQYGDDIRDIDWNVTARYVRPYVKVFEEERELTVMLL 82 F QY F+ G G E + Y ++ R V Y + L V + Sbjct: 191 FFAQYAGLFQRYGEGTKKIEYDDQTYSIPSLFVEKLQVHRLVGGY-----DNNALYVSVA 245 Query: 83 IDVSGSRDFGSVNVMKKEVITEIAATLAF 111 ++ +G+++ TE+AAT A+ Sbjct: 246 AQQQDAKLYGAMSGNSHNSQTEVAATAAY 274
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 33.4 bits (76), Expect = 4e-04 Identities = 15/68 (22%), Positives = 27/68 (39%) Query: 52 ILKSNGDSPEIYYNLGNAYYKAGKIASAILNYERALVLDPGDADVRFNLQMARQKTVDKI 111 + + + D+ E Y+L Y++GK A ++ VLD D+ L RQ Sbjct: 28 LNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYD 87 Query: 112 EPVDGFFL 119 + + Sbjct: 88 LAIHSYSY 95
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 50.4 bits (120), Expect = 3e-09 Identities = 23/43 (53%), Positives = 31/43 (72%) Query: 234 EISLEVPDTPDIPDEPDNPDNPDVPDDPDTPDEPDNPDIPDDP 276 +I D P+ PD PDNP+NPD P++PD P+ PDNP+ PD+P Sbjct: 280 DIHFANDDQPNNPDNPDNPNNPDNPNNPDEPNNPDNPNNPDNP 322 Score = 49.6 bits (118), Expect = 5e-09 Identities = 23/41 (56%), Positives = 30/41 (73%) Query: 240 PDTPDIPDEPDNPDNPDVPDDPDTPDEPDNPDIPDDPGPEN 280 PD PD P+ PDNP+NPD P++PD P+ PDNPD D+ +N Sbjct: 292 PDNPDNPNNPDNPNNPDEPNNPDNPNNPDNPDNGDNNNSDN 332 Score = 44.6 bits (105), Expect = 2e-07 Identities = 20/40 (50%), Positives = 27/40 (67%) Query: 240 PDTPDIPDEPDNPDNPDVPDDPDTPDEPDNPDIPDDPGPE 279 PD P+ PD P+NPD P+ PD+P+ PD PDN D + P+ Sbjct: 295 PDNPNNPDNPNNPDEPNNPDNPNNPDNPDNGDNNNSDNPD 334 Score = 36.9 bits (85), Expect = 6e-05 Identities = 17/31 (54%), Positives = 23/31 (74%) Query: 250 DNPDNPDVPDDPDTPDEPDNPDIPDDPGPEN 280 D P+NPD PD+P+ PD P+NPD P++P N Sbjct: 287 DQPNNPDNPDNPNNPDNPNNPDEPNNPDNPN 317
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 72.8 bits (179), Expect = 1e-20 Identities = 24/88 (27%), Positives = 42/88 (47%) Query: 2 NKVELSKQISSKMSIKQVEALRFIHTLEEVFEEALLTDNSIIFQNFGTFTLWQQTERPGR 61 NK +L +++ + + ++ + + L + FG F + ++ R GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGR 62 Query: 62 NPKTGVPVTIKARKSVKFKPGKQLLEAL 89 NP+TG + IKA K FK GK L +A+ Sbjct: 63 NPQTGEEIKIKASKVPAFKAGKALKDAV 90
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 96.8 bits (241), Expect = 2e-25 Identities = 32/137 (23%), Positives = 61/137 (44%), Gaps = 4/137 (2%) Query: 2 AKILLVEDEVNIASFIERGLQEFGHEVSVAYDGMAGWELLQKENFQFLILDIIMPRMNGL 61 A IL+ +D+ I + + + L G++V + + W + + ++ D++MP N Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 62 QLCRQYRQLYGYQSPVIMLTALGTTDDIVNGLDAGADDYLVKPFSFQE---LEARIKALL 118 L + ++ PV++++A T + + GA DYL KPF E + R A Sbjct: 64 DLLPRIKKARPDL-PVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122 Query: 119 RRIGTETATASLRCGDL 135 +R ++ S L Sbjct: 123 KRRPSKLEDDSQDGMPL 139
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 631 bits (1628), Expect = 0.0 Identities = 217/1050 (20%), Positives = 434/1050 (41%), Gaps = 55/1050 (5%) Query: 11 FSLKNKFFIFFCTAIAVIAGAVSFIHTPVDAFPDVTNTKVTIITQWPGRSAEEIEKFITI 70 F ++ F + I ++AGA++ + PV +P + V++ +PG A+ ++ +T Sbjct: 4 FFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVTQ 63 Query: 71 PIEIAMNPVQKKTDIRSTTL-FGLSVINVMFDDDADDFYARQQVYNLLNDA--DLPEGV- 126 IE MN + + ST+ G I + F D A+ QV N L A LP+ V Sbjct: 64 VIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEVQ 123 Query: 127 TPEVQPQYGPTGEIFRYTLRSDK--RTVRELKTFQDWVIERKLRAVPGVADIVSFGGEVK 184 + + + + SD T ++ + ++ L + GV D+ FG + Sbjct: 124 QQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGAQ-Y 182 Query: 185 TFEVSVNPNQLINYNVTSLELFDAIAKSNINVGGDVITKSSQA------YVVRGIGLIND 238 + ++ + L Y +T +++ + + N + + + + + Sbjct: 183 AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFKN 242 Query: 239 TKEIENIVVK-NINGTPILVKHLANVHESSLPRLGQVGRMEEDDVVQGIVVMRKGENPGE 297 +E + ++ N +G+ + +K +A V + R+ + + G N + Sbjct: 243 PEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNV-IARINGKPAAGLGIKLATGANALD 301 Query: 298 VIAALKEKIADIQENALPEDVRIVSFYDREDLVDLAVRTVTHNLAEGILLVTFIVLIFMA 357 A+K K+A++Q P+ ++++ YD V L++ V L E I+LV ++ +F+ Sbjct: 302 TAKAIKAKLAELQPF-FPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360 Query: 358 DWRTTVIVSIIIPLALLFAFICLRAMGMSANLLSMG--AIDFGIIIDGAVVMVEGLFVAL 415 + R T+I +I +P+ LL F L A G S N L+M + G+++D A+V+VE + Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVE----NV 416 Query: 416 DRKAREVGMPAFNVMSKMGLIRQTAKDRAKAVFFSKLIIITALVPIFAFQKVEGKMFSPL 475 +R E +P ++ A+ +++ +P+ F G ++ Sbjct: 417 ERVMMEDKLPPKEA------TEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQF 470 Query: 476 AYTLGFALLGALIFTLTLVPVLSSMLLKRNVRERH---NPFLAWINRVSVSIFDRCH--- 529 + T+ A+ +++ L L P L + LLK E H F W N + Sbjct: 471 SITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSV 530 Query: 530 ----AHKKTTIGIASLVAAVGLWCFTLLGTEFLPQLNEGSIYIRATLPQSISLDESVKLA 585 + I +L+ A + F L + FLP+ ++G LP + + + K+ Sbjct: 531 GKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVL 590 Query: 586 NRMRREL--ASYPEVRQVLSQTGRPNDGTDATGFYNIEFHVDIYPEKEW-ASKLTKAGLI 642 +++ V V + G G V + P +E + + +I Sbjct: 591 DQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGM---AFVSLKPWEERNGDENSAEAVI 647 Query: 643 EKMEDDLA-IYPGVDFNFSQPITDNVEEAASGVKGSIAVKVFGKDLYESEKKAVEVFKVL 701 + + +L I G F+ P + E + + +++ +A + Sbjct: 648 HRAKMELGKIRDGFVIPFNMPA---IVELGTATGFDFELIDQAGLGHDALTQARNQLLGM 704 Query: 702 ETVEGIEDLGVIRNI--GQPELRIELDESRLARYGVAKEDVQSIIEMAIGGKSASLLYED 759 + V N + ++E+D+ + GV+ D+ I A+GG + + Sbjct: 705 AAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDR 764 Query: 760 ERKFNIMVRYESAFRQSEDEIGKILVPARDGTMVPIKELADIHTITGPLIIYRDNHARFC 819 R + V+ ++ FR +++ K+ V + +G MVP H + G + R N Sbjct: 765 GRVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSM 824 Query: 820 AVKFSVR-GRDMGTAVAEAQQKVDRQVKLPEGYTLKWTGDFENQQRATKRLAQVVPVSIA 878 ++ G G A+A + KLP G WTG ++ + + +V +S Sbjct: 825 EIQGEAAPGTSSGDAMALMENLAS---KLPAGIGYDWTGMSYQERLSGNQAPALVAISFV 881 Query: 879 IIFVILFVLFGNARDAGLVLLNVPYAAVGGIVALLLTRFNFSISAGIGFIALFGICIQNG 938 ++F+ L L+ + V+L VP VG ++A L + +G + G+ +N Sbjct: 882 VVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNA 941 Query: 939 VIMISDIKGNL-KNRTPLPLAVKQSVKDRVRSVLMTASMAAIGLMPAALSHGIGSESQRP 997 ++++ K + K + A +V+ R+R +LMT+ +G++P A+S+G GS +Q Sbjct: 942 ILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNA 1001 Query: 998 LAIVIIGGLIGATFFTLFVFPLMVEAFYSR 1027 + I ++GG++ AT +F P+ Sbjct: 1002 VGIGVMGGMVSATLLAIFFVPVFFVVIRRC 1031
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 42.5 bits (100), Expect = 2e-06 Identities = 35/207 (16%), Positives = 70/207 (33%), Gaps = 37/207 (17%) Query: 94 SSEVADYEKQRKEAGQQIILADRNLEATRDMFNSGMASER-----DVLQAEQEAANARAE 148 +E+ Y+ Q ++ +I+ A + +F + + + ++ E A Sbjct: 265 VNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEER 324 Query: 149 QKRIDEVYAIYHITGNSTYEIQSPVSGFVIGKNVSRNMQ-IRSDQTEELFTISGLDNV-W 206 Q+ I++PVS V V + + +T L I D+ Sbjct: 325 QQAS---------------VIRAPVSVKVQQLKVHTEGGVVTTAET--LMVIVPEDDTLE 367 Query: 207 VMADVYESDISRVGEGAAVRITTLAYRDREF---TGTVDKVY--NMLDSESKTM-SIRVK 260 V A V DI + G I A+ + G V + + D + ++ + Sbjct: 368 VTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVIIS 427 Query: 261 L-------KNEDYLLKPGMFTNVYVQT 280 + N++ L GM ++T Sbjct: 428 IEENCLSTGNKNIPLSSGMAVTAEIKT 454 Score = 31.3 bits (71), Expect = 0.006 Identities = 18/91 (19%), Positives = 31/91 (34%), Gaps = 5/91 (5%) Query: 64 VYPIFGGNITEVNVEMGDYVKKGDILAIIHSSEV-ADYEKQRKEAGQQIILADRNL---- 118 + PI + E+ V+ G+ V+KGD+L + + AD K + Q + R Sbjct: 99 IKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSR 158 Query: 119 EATRDMFNSGMASERDVLQAEQEAANARAEQ 149 + + Q E R Sbjct: 159 SIELNKLPELKLPDEPYFQNVSEEEVLRLTS 189
>PF07201#Hypersensitivity response secretion protein HrpJ Length = 293 Score = 27.9 bits (62), Expect = 0.026 Identities = 11/42 (26%), Positives = 21/42 (50%) Query: 99 SMKKFQAAQGELSSALSRLMLVIERYPDLKANQNFSELQAQL 140 +K +Q +S ++ + + P+L+ QN SEL + L Sbjct: 69 DKRKLSDSQARVSDVEEQVNQYLSKVPELEQKQNVSELLSLL 110
>cloacin#Cloacin signature. Length = 551 Score = 40.5 bits (94), Expect = 6e-06 Identities = 18/34 (52%), Positives = 20/34 (58%) Query: 294 GGGGGRGGGFGGGFGGFGGGGGGSWGGGRSGGGG 327 GGG G G +GGG G GGG G+ GGG GG Sbjct: 47 GGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGN 80 Score = 37.4 bits (86), Expect = 7e-05 Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 13/53 (24%) Query: 289 GPVIIGGGGGR-------------GGGFGGGFGGFGGGGGGSWGGGRSGGGGS 328 GP +G GGG GGG G G GG G G+ GG + GGGS Sbjct: 23 GPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGS 75 Score = 33.1 bits (75), Expect = 0.001 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 2/37 (5%) Query: 294 GGGGGRGGGFGGGFGGFGGGGGGSWGGGRSGGGGSIS 330 G G GGG G G GG G GG G G G +++ Sbjct: 51 GSGIHWGGGSGHGNGGGNGNSGGGSGTG--GNLSAVA 85 Score = 32.4 bits (73), Expect = 0.002 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 3/36 (8%) Query: 298 GRGGGFGGGFGGFGG---GGGGSWGGGRSGGGGSIS 330 G G G G +GG G GGG GG SG GG++S Sbjct: 47 GGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLS 82 Score = 31.6 bits (71), Expect = 0.004 Identities = 12/29 (41%), Positives = 13/29 (44%) Query: 288 TGPVIIGGGGGRGGGFGGGFGGFGGGGGG 316 +G GG G GG G GG G GG Sbjct: 52 SGIHWGGGSGHGNGGGNGNSGGGSGTGGN 80 Score = 31.2 bits (70), Expect = 0.005 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 1/31 (3%) Query: 293 IGGGGGRGGGFGGGFGGFGGGGGGSWGGGRS 323 I GGG G G GGG G GGG G+ G + Sbjct: 54 IHWGGGSGHGNGGG-NGNSGGGSGTGGNLSA 83 Score = 30.1 bits (67), Expect = 0.015 Identities = 21/50 (42%), Positives = 22/50 (44%), Gaps = 14/50 (28%) Query: 293 IGGGGGRG---------GGFGGGFGGFGGGGGGSWGGGRSG-----GGGS 328 + GG GRG G GG G G GGG S G G S GGGS Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGS 50
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 34.2 bits (78), Expect = 0.001 Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 10/72 (13%) Query: 421 VEAEPETESESKKESTGVRPDSQEKK---IVKPETTPKQTDPVKQKVEPVVNDIKQPVTA 477 EPE E E P+ ++ I KP+ PK +KVE D+K + Sbjct: 72 PVVEPEPEPE-------PIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESR 124 Query: 478 PSVPTEAEMNAE 489 P+ P E A Sbjct: 125 PASPFENTAPAR 136
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 29.8 bits (67), Expect = 0.004 Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 8/40 (20%) Query: 5 KCPHCHVGLKVDEGKLPLDLTSF-----KCPKCKQPIPVS 39 CPHC+ + E +P L S+ +C C+ PI Sbjct: 73 CCPHCNHPITALE-NIP--LLSWLWLRGRCRGCQAPISAR 109
>PF06438#Heme acquisition protein HasAp Length = 205 Score = 27.6 bits (61), Expect = 0.027 Identities = 11/22 (50%), Positives = 13/22 (59%) Query: 100 AFIDGSNIHYTWQGNVRIYLWG 121 AFI G ++HYT N LWG Sbjct: 66 AFIAGGDLHYTLFSNPSHTLWG 87
>TYPE3OMGPROT#Type III secretion system outer membrane G protein family signature. Length = 607 Score = 29.5 bits (66), Expect = 0.010 Identities = 11/70 (15%), Positives = 31/70 (44%), Gaps = 3/70 (4%) Query: 5 KTNIEGVVIIEPKVFKDARGYFFESFSQREFEEKVRKINFVQDNESMSSYGVMRGLHFQC 64 + IIEP++ + + + ++ + ++ + N+S + ++ G QC Sbjct: 495 TRRTVRLFIIEPRIIDEGIAHHLALGNGQDLRTGILTVDEIS-NQSTTLNKLLGG--SQC 551 Query: 65 PPFTQSKLVR 74 P +++ V+ Sbjct: 552 QPLNKAQEVQ 561
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 49.4 bits (118), Expect = 6e-09 Identities = 29/162 (17%), Positives = 57/162 (35%), Gaps = 23/162 (14%) Query: 1 MNILVTGANGQLG---------NEMRIIARESGDTYFFTDVNRQE---------GVDTIF 42 M LVTGA G +G +++ ++ + Y+ DV+ ++ G Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYY--DVSLKQARLELLAQPGFQFHK 58 Query: 43 LDITDLQAIREMVATHAIDAIVNCAAYTNVDAAESNEALAEKLNAEAPENLARAMKEVN- 101 +D+ D + + ++ A+ + + V + N N N+ + Sbjct: 59 IDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKI 118 Query: 102 GLLVQISTDYVFGKEPYNIPCKETQQ-GTPTGVYGMTKLHGE 142 L+ S+ V+G +P P +Y TK E Sbjct: 119 QHLLYASSSSVYGLNRK-MPFSTDDSVDHPVSLYAATKKANE 159
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 166 bits (423), Expect = 1e-50 Identities = 83/374 (22%), Positives = 150/374 (40%), Gaps = 66/374 (17%) Query: 5 NIVITGGAGFIGSHVVRLFVNKYPEYNIINLDKLT--YAGNL--ANLKDIEDKPNYKFVK 60 ++TG AGFIG HV + + + ++ +D L Y +L A L+ + +P ++F K Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAG--HQVVGIDNLNDYYDVSLKQARLELLA-QPGFQFHK 58 Query: 61 MDICDFEAFYQLMQEEHIDGIIHLAAESHVDRSIKDPFTFARTNVMGTLSLLQAAKLYWE 120 +D+ D E L H + + V S+++P +A +N+ G L++L+ + Sbjct: 59 IDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCR---- 114 Query: 121 SLPEKYEGKRFYHISTDEVYGALTMNHPEGIKPPFTTTASSAEHHLAYGDDFFYEDTKYN 180 + + + S+ VYG K PF +T S +H Sbjct: 115 ----HNKIQHLLYASSSSVYGLNR-------KMPF-STDDSVDH---------------- 146 Query: 181 PHSPYSAAKTSSDHFVRAYHDTYGMPTIVTNCSNNYGPYQFPEKLIPLFINNIRHRKPLP 240 P S Y+A K +++ Y YG+P YGP+ P+ + F + K + Sbjct: 147 PVSLYAATKKANELMAHTYSHLYGLPATGLRFFTVYGPWGRPDMALFKFTKAMLEGKSID 206 Query: 241 VYGKGENVRDWLFVEDHA----RAIDLIFHEGKVA--------------ETYNIGGFNEW 282 VY G+ RD+ +++D A R D+I H YNIG + Sbjct: 207 VYNYGKMKRDFTYIDDIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPV 266 Query: 283 KNIDIIKVVIKTVDRLLGRTEGEDLNLITYVTDRLGHDARYAIDSTKLQKELGWEPSLQF 342 + +D I+ + + + + G + D+ L + +G+ P Sbjct: 267 ELMDYIQALEDALGIEA---------KKNMLPLQPGDVLETSADTKALYEVIGFTPETTV 317 Query: 343 EEGIEKTVRWYLDN 356 ++G++ V WY D Sbjct: 318 KDGVKNFVNWYRDF 331
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 28.6 bits (63), Expect = 0.042 Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 6/35 (17%) Query: 53 FTYSKTGLKYEPKLIYKSDDYNI----SASIYHEI 83 F + K PKLI DY I S +Y+EI Sbjct: 141 FVFEKKR--ETPKLIINIKDYAINSEQSKEVYYEI 173
>THERMOLYSIN#Thermolysin metalloprotease (M4) family signature. Length = 544 Score = 30.0 bits (67), Expect = 0.011 Identities = 16/60 (26%), Positives = 27/60 (45%) Query: 209 NRMYYLHNVTAVHRHIESTKGNVMKRYKLFWQSRRYYLKYYSGYSKLFIVVIDIFQKVYF 268 N+ YL + VH + T K K+F+++ YYL S +S+L + +Y Sbjct: 466 NKAAYLLSQGGVHYGVSVTGIGRDKMGKIFYRALVYYLTPTSNFSQLRAACVQAAADLYG 525
>PF03627#PapG Length = 336 Score = 29.1 bits (65), Expect = 0.036 Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 5/47 (10%) Query: 314 IDFTLGYYIKVVPLKWKRKLIVFDRYYYDYYVDMYRYHYSLPQWLPR 360 D LG Y V + + + R++ Y ++ Y++ + LPR Sbjct: 162 ADLPLGDY--SVTIPYTSGM---QRHFASYLGARFKIPYNVAKTLPR 203
>PF05704#Capsular polysaccharide synthesis protein Length = 307 Score = 144 bits (364), Expect = 9e-43 Identities = 58/266 (21%), Positives = 116/266 (43%), Gaps = 24/266 (9%) Query: 83 KYQNYEIIDRATIPVEKYPIWVFWWQGVNGMPKVVRRCYDLINKNNE--NVTLLTIDNVR 140 + N EII P+ + I++ W QG+ P +V++C + KN+ V ++ +N + Sbjct: 55 CFFNDEIIQE---PMRQKYIFICWLQGIEKAPYIVQQCVASVKKNSGDFKVIIIDGNNYK 111 Query: 141 EYINIPEIIFDKVKTGEISYTHFSDILRLTLLSDKGGMWIDATCFNPYAIP-EDAKKQIF 199 E+++IP+ + + + G++ FSDILRL LL GG+WIDAT + +P + F Sbjct: 112 EWVDIPDFLIKRWQEGKMLDAWFSDILRLFLLCKYGGLWIDATVYMFDKVPNYIVESNRF 171 Query: 200 YSPHDCHK-QKKLAGNYMYWCDSGGWRSWNIGTNIIRNPLFAFSSELITALAVKEKCFPN 258 + + N++ + S +P + K++ + Sbjct: 172 MFQSSFLESETTHISNWLIFVKSKN------------DPFLVGLKNSMVTYLKKKEKPAD 219 Query: 259 YFMVDCMISYAYRNFNWAKNMIDNMPDFNTRCADLFLLYFNTNKQYNEEEYRQLIKNDWI 318 Y++ +S + ++K + +P N + +L + N Y+ + + + Sbjct: 220 YYIFHDFVSVMAVSKEYSKYWKE-IPYVNN--VNPHMLQYLGNLPYDNSMFNYIKSTSPV 276 Query: 319 FKLTYKTIWLERVDGKLTFYGKLLSV 344 KLTYK + + T+Y + S+ Sbjct: 277 QKLTYKLDYNN--LKRNTYYDHIFSI 300
>FLGFLGJ#Flagellar protein FlgJ signature. Length = 313 Score = 41.2 bits (96), Expect = 1e-06 Identities = 28/124 (22%), Positives = 47/124 (37%), Gaps = 35/124 (28%) Query: 121 VVLAQAILETGWFRSPVCRNK----HNLFGLTNPRT----------------------GK 154 ++LAQA LE+GW + + R +NLFG+ K Sbjct: 173 LILAQAALESGWGQRQIRRENGEPSYNLFGVKASGNWKGPVTEITTTEYENGEAKKVKAK 232 Query: 155 YYEFEHWTESVRAY---------YTKVQYKYKGGNYLLWLRDIGYAEDPEYIRSVIRVLK 205 + + + E++ Y Y V L+D GYA DP Y R + +++ Sbjct: 233 FRVYSSYLEALSDYVGLLTRNPRYAAVTTAASAEQGAQALQDAGYATDPHYARKLTNMIQ 292 Query: 206 QLRE 209 Q++ Sbjct: 293 QMKS 296
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 30.8 bits (69), Expect = 5e-04 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 4/68 (5%) Query: 4 EGYPVFKGLQKPLEFMGIRGRFLTLAAVAIG--VSFVGFIVFSIALGKLAGFIAMLVMVM 61 GY V + K + + FLTL A VS+V ++FS+ G G + ++ Sbjct: 443 FGYDVVSDILKIKDTGDWKPLFLTLEKKAADAGVSYVVALLFSLLAGTTLGIWG--IAIV 500 Query: 62 AGLVTIYI 69 G++ YI Sbjct: 501 TGILCSYI 508
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 27.2 bits (60), Expect = 0.017 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 7/55 (12%) Query: 22 VSRKVAVAVGTFTFAVADAMASSKGAAGFTKATQEISSYETPVSNLMKAIAAVIV 76 VS ++ +F + ADA +K AAG T+ + N+ K I+ I+ Sbjct: 245 VSGILSAISASFILSNADADTRTKAAAGVELTTKVL-------GNVGKGISQYII 292
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 298 bits (765), Expect = 7e-93 Identities = 108/469 (23%), Positives = 186/469 (39%), Gaps = 94/469 (20%) Query: 455 GKQVVLVRIETSPEDLAGM--AVAEGILTARGGMTSHAAVVARGMGKCCVSGAGGLNIDY 512 ++ V++ + +P D A + +G T GG TSH+A+++R + V G + Sbjct: 154 AEETVIIAEDLTPSDTAQLNKQFVKGFATDIGGRTSHSAIMSRSLEIPAVVGTKEVTEK- 212 Query: 513 KKKTIEVGGITLKEGDFLSINGSTGEIF-------EGQIETQAAELSDDFAELMKLADKY 565 ++ GD + ++G G + E + A E KL + Sbjct: 213 -----------IQHGDMVIVDGIEGIVIVNPTEEEVKAYEEKRAAFEKQKQEWAKLVGEP 261 Query: 566 T------KLQVRTNADTPHDAEIARAFGASGIGLCRTEHMFFEGEKIKAMREMILAEDAE 619 + +++ N TP D + A G GIGL RTE ++ + +++ E Sbjct: 262 STTKDGAHVELAANIGTPKDVDGVLANGGEGIGLYRTEFLYMDRDQLPTEEE-------- 313 Query: 620 GRKNALKKILPYQQADFKGIFKAMHDLPVTVRLLDPPLHEFVPHDQKGQEEMAEAMGISV 679 Q +K + + M PV +R LD + + + Q +E Sbjct: 314 ------------QFEAYKEVVQRMDGKPVVIRTLDIGGDKELSYLQLPKEL--------- 352 Query: 680 KEIQQRVESLCEHNPMLGHRGCRLGNTYPEITEMQTRAILGAALELKKEGIVAKPEIMVP 739 NP LG R RL +I Q RA+L A+ ++M P Sbjct: 353 -------------NPFLGFRAIRLCLEKQDIFRTQLRALLRASTY-------GNLKVMFP 392 Query: 740 LTGILYEFKEQEKVIRAAAEKLFAE-VEDRIDFKVGTMIEIPRAALTADRIASSAEFFSF 798 + L E ++ + +++ +KL +E V+ +VG M+EIP A+ A+ A +FFS Sbjct: 393 MIATLEELRQAKAIMQEEKDKLLSEGVDVSDSIEVGIMVEIPSTAVAANLFAKEVDFFSI 452 Query: 799 GTNDLTQMTFGYSRDD-IASFLPIYLEKKILKVDPFQVLDQNGVGQLVRMATEKGRAIRP 857 GTNDL Q T R + S+L P+ V +++ A +G+ Sbjct: 453 GTNDLIQYTMAADRMNERVSYL----------YQPYHPAILRLVDMVIKAAHSEGK---- 498 Query: 858 DLKCGICGEHGGEPSSVKFCHKVGLNYVSCSPFRVPIARIAAAQAAIEE 906 G+CGE G+ ++ +GL+ S S + AR + + EE Sbjct: 499 --WVGMCGEMAGDEVAIPLLLGLGLDEFSMSATSILPARSQLLKLSKEE 545
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 37.7 bits (87), Expect = 7e-05 Identities = 21/117 (17%), Positives = 46/117 (39%) Query: 126 IGKSYNSETYYEQQISELKSSKSKLEKQLSELQKTKEQLSEVSQDQKTELQQKENDISQT 185 + + N T +I L++ K+ LE + +EL+K E S +++ E + + Sbjct: 234 LEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAAL 293 Query: 186 KIELAETLSRLSDAEKELEEKRKQEDAQKNWSEKIESTFKNLSSLLDPISKEYSRLS 242 + E A+ + + R+ DA + +++E+ + L L Sbjct: 294 EAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLR 350 Score = 33.9 bits (77), Expect = 0.001 Identities = 18/103 (17%), Positives = 36/103 (34%) Query: 128 KSYNSETYYEQQISELKSSKSKLEKQLSELQKTKEQLSEVSQDQKTELQQKENDISQTKI 187 + N T +I L++ K+ LE + +EL+K E S +++ E + + Sbjct: 166 GAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAA 225 Query: 188 ELAETLSRLSDAEKELEEKRKQEDAQKNWSEKIESTFKNLSSL 230 A+ L A + + +E+ L Sbjct: 226 RKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKA 268
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 42.3 bits (99), Expect = 3e-07 Identities = 18/63 (28%), Positives = 30/63 (47%) Query: 9 ERKLIKDKLKEGALLFIQQQGVRKTSVDELVKYANISKGAFYLFYTSKELLFFDTIIDYH 68 E + + + + AL QQGV TS+ E+ K A +++GA Y + K LF + Sbjct: 8 EAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSE 67 Query: 69 KKL 71 + Sbjct: 68 SNI 70
>PF05272#Virulence-associated E family protein Length = 892 Score = 25.8 bits (56), Expect = 0.039 Identities = 10/41 (24%), Positives = 17/41 (41%) Query: 59 KELGAEYLNQRMEQKRKNYLKKELEALGYKVKISRDDGPIP 99 E G EYL + Q+R+ Y++ ++ D P Sbjct: 827 NENGWEYLRETSGQRRRGYMRPQVWPPVIAEDKEADQAHAP 867
>PF07201#Hypersensitivity response secretion protein HrpJ Length = 293 Score = 29.4 bits (66), Expect = 0.022 Identities = 14/74 (18%), Positives = 24/74 (32%), Gaps = 16/74 (21%) Query: 21 LGQQPAGRQVVEAAEQTLLSLGME---EIRVAQTDSVCTIAYED----------NIYRGT 67 L +P + EQ L+S+ E I + + + YR Sbjct: 146 LKGRPELAHLSHLVEQALVSMAEEQGETIVLGARITPEAYRESQSGVNPLQPLRDTYRDA 205 Query: 68 ---YRGLAAVIEAL 78 Y+G+ A+ L Sbjct: 206 VMGYQGIYAIWSDL 219
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 34.3 bits (79), Expect = 3e-05 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%) Query: 37 NK--LCEIIASYSTASRGDVMLVIDGLLYVMRQHLENGEVVQVGDFGNF 83 NK L +A + ++ D +D + + +L GE VQ+ FGNF Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNF 51
>FLGFLGJ#Flagellar protein FlgJ signature. Length = 313 Score = 62.8 bits (152), Expect = 2e-14 Identities = 40/145 (27%), Positives = 70/145 (48%), Gaps = 24/145 (16%) Query: 4 QDFIKQYLPLAQKAGVQFGMNPVIILAQSAIETGWGESTLCKEH----NNFFGITAYGHP 59 + F+ Q AQ A Q G+ +ILAQ+A+E+GWG+ + +E+ N FG+ A G+ Sbjct: 150 KAFLAQLSLPAQLASQQSGVPHHLILAQAALESGWGQRQIRRENGEPSYNLFGVKASGN- 208 Query: 60 NPFWKGDRTDLSVV---TGRPTL---WFRRYASPEDSFLDFARLI-----HSAYPVAAT- 107 WKG T+++ G FR Y+S ++ D+ L+ ++A AA+ Sbjct: 209 ---WKGPVTEITTTEYENGEAKKVKAKFRVYSSYLEALSDYVGLLTRNPRYAAVTTAASA 265 Query: 108 ----LTFHPAAYAKEIAYSKYISEV 128 A YA + Y++ ++ + Sbjct: 266 EQGAQALQDAGYATDPHYARKLTNM 290
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 71.4 bits (175), Expect = 7e-16 Identities = 48/243 (19%), Positives = 91/243 (37%), Gaps = 39/243 (16%) Query: 1 MNILVTGAKGFVGRNLVSQL----------------HNIQSGKARNYPVSGTELKVFEYD 44 M LVTGA GF+G ++ +L +++ +AR ++ + + D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 45 IDSDPAELDVYC-KNADFVFNL---AGVNR-PKDQAEFMKGNFGFASTLLDTLKKYNNTC 99 + D++ + + VF V ++ + N +L+ + Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 100 PVMISSS------------TQAALDNP---YGESKRAGENLLFEYAKETGAKVLVYRFPN 144 + SSS T ++D+P Y +K+A E + Y+ G RF Sbjct: 121 LLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFFT 180 Query: 145 VFGKWCRPNYNSAVATFCNNIANDLPIRV-NDSSVVMNLVYVDDVVDELIAALSGGEHHE 203 V+G W RP+ A+ F + I V N + + Y+DD+ + +I H + Sbjct: 181 VYGPWGRPDM--ALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPHAD 238 Query: 204 GDF 206 + Sbjct: 239 TQW 241
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 56.7 bits (137), Expect = 3e-11 Identities = 42/231 (18%), Positives = 84/231 (36%), Gaps = 29/231 (12%) Query: 10 LITGGTGSFGNAVLRRFLDSDIKEIRIFS----RDEKKQDDMRHALQNPKVKFYIGNVRN 65 L+TG G G V +R L++ + + I + D + L P +F+ ++ + Sbjct: 4 LVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDLAD 63 Query: 66 KTSVD--IAMRGVDYVFSAAALKQVPSCEFFPMEATRTNVEGTENVLLSAIEHGVKNVVV 123 + + A + VF + V P +N+ G N+L + +++++ Sbjct: 64 REGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHLLY 123 Query: 124 LST---------------DKAAYPINAMGISKALMEKVAIAKGRELGEGAQTTICCTRYG 168 S+ D +P++ +K E +A G T R+ Sbjct: 124 ASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLY--GLPATG--LRFF 179 Query: 169 NVMASRGS---VIPLWVEQIEQGKPITV-TDPEMTRFMMTLDDAVDLVIYA 215 V G + + + + +GK I V +M R +DD + +I Sbjct: 180 TVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRL 230
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 32.3 bits (73), Expect = 0.004 Identities = 12/51 (23%), Positives = 20/51 (39%) Query: 190 TLQQYVEQPDYYYNVMLYRDKKGNMDNYTIIKIRRYFPLKGGSSCYSETVE 240 T+ Y N +R K Y ++ Y+ L+ G+S SE + Sbjct: 567 TITPYNIDAPDEDNPYAFRRIKDGGQLYLNLENYTYYALRKGASTRSELPK 617
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 29.9 bits (67), Expect = 0.037 Identities = 17/58 (29%), Positives = 21/58 (36%), Gaps = 9/58 (15%) Query: 541 DLKEENSQSISASADFYRRFGPVQTNFLVEGFYTDLRNVFILEEIGRDNDNNLLMERR 598 LK E ++ P + +V G YTD IG D N L ERR Sbjct: 229 TLKPEGQAALDQLYSQLSNLDPKDGSVVVLG-YTD--------RIGSDAYNQGLSERR 277
>STREPKINASE#Streptococcus streptokinase protein signature. Length = 440 Score = 29.7 bits (66), Expect = 0.022 Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 26/133 (19%) Query: 80 KLFPRKTVEIMQKQALDKYNLTQLLTDESVLSQLEPNIGLLKNILTFRNMM-PEHVRKLA 138 KLF K V++ + +LL E +L+ E N L FR++ P KL Sbjct: 319 KLFTIKYVDV---------DTNELLKSEQLLTASERN-------LDFRDLYDPRDKAKLL 362 Query: 139 YSIVEQ---VIKEIQKKLEIN------VRKAFYGKKLPHTNSSYKIFRNFDFKQTIEKNL 189 Y+ ++ + + K+E N + + GK+ N+SY + + D E+ + Sbjct: 363 YNNLDAFGIMDYTLTGKVEDNHDDTNRIITVYMGKRPEGENASYHLAYDKDRYTEEEREV 422 Query: 190 KNYSREHGTIIPD 202 +Y R GT IPD Sbjct: 423 YSYLRYTGTPIPD 435
>INFPOTNTIATR#Macrophage infectivity potentiator signature. Length = 233 Score = 103 bits (259), Expect = 1e-30 Identities = 52/141 (36%), Positives = 80/141 (56%), Gaps = 8/141 (5%) Query: 1 MAK-----NRK-EEYKEQNLRYLEEIASQEGVKKLAGGILYKVTEQGSGTVSPRLDNVVS 54 MAK N+K EE K + +L S+ G+ L G+ YK+ + G+G P + V+ Sbjct: 90 MAKRSAEFNKKAEENKAKGDAFLSANKSKPGIVVLPSGLQYKIIDAGTGA-KPGKSDTVT 148 Query: 55 VHYRGTLMNGREFDNSYERNCPEAFRLNQVIEGWQIALQQMYVGDKWVIYIPYTVGYGNR 114 V Y GTL++G FD++ + P F+++QVI GW ALQ M G W +++P + YG R Sbjct: 149 VEYTGTLIDGTVFDSTEKAGKPATFQVSQVIPGWTEALQLMPAGSTWEVFVPADLAYGPR 208 Query: 115 A-SGPIPAFSTLIFEVELLGI 134 + GPI TLIF++ L+ + Sbjct: 209 SVGGPIGPNETLIFKIHLISV 229
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 37.1 bits (86), Expect = 8e-05 Identities = 13/105 (12%), Positives = 32/105 (30%), Gaps = 18/105 (17%) Query: 93 DTYQDNVTQAEAALKTSKAQLDYARSNYERMKEAAKSGAVSQIQVLQAQSTAQEMEASVR 152 Y+ + Q E+ + ++K + ++ ++L + + Sbjct: 269 RVYKSQLEQIESEILSAKEEYQLVTQLFKN-------------EILDKLRQTTDNIGLLT 315 Query: 153 NSEAELNTARTNLSYCYIRAPFDGRI-TRATYDIGNYINGAAQPV 196 EL IRAP ++ + G + A+ + Sbjct: 316 L---ELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVV-TTAETL 356 Score = 32.1 bits (73), Expect = 0.003 Identities = 15/84 (17%), Positives = 33/84 (39%), Gaps = 9/84 (10%) Query: 78 GSKVKKGELIFVIEPDTYQDNVTQAEAALKTSKAQLDYARSNYERMKEAAKSGAVSQIQV 137 G V+KG+++ + AEA +++ L AR R + S ++ ++ Sbjct: 115 GESVRKGDVLLKLTA-------LGAEADTLKTQSSLLQARLEQTRYQ--ILSRSIELNKL 165 Query: 138 LQAQSTAQEMEASVRNSEAELNTA 161 + + + +V E T+ Sbjct: 166 PELKLPDEPYFQNVSEEEVLRLTS 189
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 940 bits (2431), Expect = 0.0 Identities = 412/1030 (40%), Positives = 623/1030 (60%), Gaps = 12/1030 (1%) Query: 1 MVKFFINRPIFATVLALIIVVAGLVTLNVLPIAQYPDITPPTVQVSAVYPGADAQTVAQT 60 M FFI RPIFA VLA+I+++AG + + LP+AQYP I PP V VSA YPGADAQTV T Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VGLPIEQQVNGVDGMLYMSSNSSSSGAYSLTITFAVGTDIDMATVMVQNRVSIAQSSLPE 120 V IEQ +NG+D ++YMSS S S+G+ ++T+TF GTD D+A V VQN++ +A LP+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 121 AVIVQGITTKKQSSNIVMMLSLTSRDSLYDGLYLSNYASLNLTDQLARLPGVGSVSVMGA 180 V QGI+ +K SS+ +M+ S + +S+Y + N+ D L+RL GVG V + G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG- 179 Query: 181 GNYSMRIWLDPEVMRIRNLTPDMVFQAISTQNRQVSAGYVGQPIAEANNPYQYTLTVKGR 240 Y+MRIWLD +++ LTP V + QN Q++AG +G A ++ + R Sbjct: 180 AQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 241 LTTPEEFGNIILRTEQGGKILRLKDIARIELGSSSYNVTSRLRGQQAAAIAIYQLPGSNS 300 PEEFG + LR G ++RLKD+AR+ELG +YNV +R+ G+ AA + I G+N+ Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 301 LEVSKAVRAKMEEIASTLPAGVEYGVTLDTTEVINASIDEVLVTFLETTALVVLVIFLFL 360 L+ +KA++AK+ E+ P G++ DTT + SI EV+ T E LV LV++LFL Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 361 QNFRAVIIPCLSIPVSLIGTLAVMGALGFSVNTLTLFGLILAIAIVVDDAIIVVENSSRY 420 QN RA +IP +++PV L+GT A++ A G+S+NTLT+FG++LAI ++VDDAI+VVEN R Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 421 MDTGKYTAREAVTKAMGELVGPVIGVVLVLLAVFIPTTFIGGISGQLYKQFALTIAAATV 480 M K +EA K+M ++ G ++G+ +VL AVFIP F GG +G +Y+QF++TI +A Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 481 LSGINSLTLTPALCALFLRVT----NDPKFVVFKAFNKVYDKTQKIYDDVVDRMLKHQLV 536 LS + +L LTPALCA L+ ++ K F FN +D + Y + V ++L Sbjct: 480 LSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539 Query: 537 TLIIFLIVSATAAVMFMRWPSTFIPEEDDGYFIISSQLPPASSLPRTEAVSQKINKILDT 596 L+I+ ++ A V+F+R PS+F+PEED G F+ QLP ++ RT+ V ++ Sbjct: 540 YLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLK 599 Query: 597 Y--PEVKTYMGINGFSVMGGGELSNTGTYFVVLKNWSERKGKGHTAQDVVTRFNREAYGI 654 V++ +NGFS G+ N G FV LK W ER G ++A+ V+ R E I Sbjct: 600 NEKANVESVFTVNGFSF--SGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKI 657 Query: 655 QEAQIFALVPPAIPGLGASGGLQLQLEDRKNLGPTEMQHAIQTLLETYRTKP-QLLSLSS 713 ++ + PAI LG + G +L D+ LG + A LL P L+S+ Sbjct: 658 RDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRP 717 Query: 714 MYQANVPQYRLNIDRDKVQLLGLQLSDVFSTLSYYMGAAYVNDFVEFGRIYQVKIEAGGQ 773 + Q++L +D++K Q LG+ LSD+ T+S +G YVNDF++ GR+ ++ ++A + Sbjct: 718 NGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAK 777 Query: 774 AQKVIDDVMRLSLENSSGKMVPFSAFTEAKQQLGLDQINLYNMYSSASITCIANPKYSSG 833 + + +DV +L + +++G+MVPFSAFT + G ++ YN S I A P SSG Sbjct: 778 FRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSG 837 Query: 834 EAIQAMEELIQEQLGDNFGYEWTSVAYQETKAGSTTMLIFGMALLVAFLVLSAQYESWTS 893 +A+ ME + +L GY+WT ++YQE +G+ + ++ +V FL L+A YESW+ Sbjct: 838 DAMALMEN-LASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSI 896 Query: 894 PLAAIMGLPIALLGAILGCFIMGVPVSVYTQIGIILLIALSAKNGILIVEFARD-YRAAG 952 P++ ++ +P+ ++G +L + VY +G++ I LSAKN ILIVEFA+D G Sbjct: 897 PVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEG 956 Query: 953 NPIREAALEAGHVRLRPILMTSFAFVLGVMPLLFATGAGAASRVSLGAAVVFGMAINTIF 1012 + EA L A +RLRPILMTS AF+LGV+PL + GAG+ ++ ++G V+ GM T+ Sbjct: 957 KGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLL 1016 Query: 1013 ATAFIPSFYE 1022 A F+P F+ Sbjct: 1017 AIFFVPVFFV 1026 Score = 95.3 bits (237), Expect = 6e-22 Identities = 57/320 (17%), Positives = 115/320 (35%), Gaps = 10/320 (3%) Query: 180 AGNYSMRIWLDPEVMRIRNLTPDMVFQAISTQNRQVSAGYVGQPIAEANNPYQYTLTVKG 239 ++ +D E + ++ + Q IST + YV I Y Sbjct: 721 EDTAQFKLEVDQEKAQALGVSLSDINQTISTA---LGGTYVNDFIDRGRVKKLYVQADAK 777 Query: 240 RLTTPEEFGNIILRTEQGGKILRLKDIARIELGSSSYNVTSRLRGQQAAAIAIYQLPGSN 299 PE+ + +R+ G+++ S + R G + I PG++ Sbjct: 778 FRMLPEDVDKLYVRSA-NGEMVPFSAFTTSHWVYGSPRLE-RYNGLPSMEIQGEAAPGTS 835 Query: 300 SLEVSKAVRAKMEEIASTLPAGVEYGVTLDTTEVINASIDEVLVTFLETTALVVLVIFLF 359 S + A ME +AS LPAG+ Y T + S ++ + +V L + Sbjct: 836 SGDA----MALMENLASKLPAGIGYDWT-GMSYQERLSGNQAPALVAISFVVVFLCLAAL 890 Query: 360 LQNFRAVIIPCLSIPVSLIGTLAVMGALGFSVNTLTLFGLILAIAIVVDDAIIVVENSSR 419 +++ + L +P+ ++G L + + GL+ I + +AI++VE + Sbjct: 891 YESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKD 950 Query: 420 YMDTGKYTAREAVTKAMGELVGPVIGVVLVLLAVFIPTTFIGGISGQLYKQFALTIAAAT 479 M+ EA A+ + P++ L + +P G + + Sbjct: 951 LMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGM 1010 Query: 480 VLSGINSLTLTPALCALFLR 499 V + + ++ P + R Sbjct: 1011 VSATLLAIFFVPVFFVVIRR 1030 Score = 72.2 bits (177), Expect = 9e-15 Identities = 77/516 (14%), Positives = 160/516 (31%), Gaps = 47/516 (9%) Query: 531 LKHQLVTLIIFLIVSATAAVMFMRWPSTFIPEEDDGYFIISSQLPPASSLPRTEAVSQKI 590 ++ + ++ +I+ A+ ++ P P +S+ P A + V + Sbjct: 6 IRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGAD----AQTVQDTV 61 Query: 591 NKILDTYPEVKTYMGINGFSVMGGGELSNTGTYFVVLKNWSERKGKGHTAQDVVTRFNRE 650 T + GI+ M S + + V + Sbjct: 62 -----TQVIEQNMNGIDNLMYMSSTSDSAGSVTITL--TFQSGTDPDIAQVQVQNKLQLA 114 Query: 651 AYGIQEAQIFALVPPAIPGLGASGGLQLQLE---DRKNLGPTEMQHAIQTLLETYRTKPQ 707 + + + I +S + D ++ + + + K Sbjct: 115 TPLLPQE----VQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNV-----KDT 165 Query: 708 LLSLSSMYQANV----PQYRLNIDRDKVQLLGLQLSDVFSTLS----YYMGAAYVNDFVE 759 L L+ + + R+ +D D + L DV + L Sbjct: 166 LSRLNGVGDVQLFGAQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPAL 225 Query: 760 FGRIYQVKIEAGGQAQKVIDDVMRLSLENSSGKMVPFSAFTEAKQQLGLDQINLYNMYSS 819 G+ I A + + + NS G +V A+ +LG + N+ + Sbjct: 226 PGQQLNASIIAQTRFKNPEEFGKVTLRVNSDGSVVRLKDV--ARVELGGENYNVIARING 283 Query: 820 ASITCI-------ANPKYSSGEAIQAMEELIQEQLGDNFGYEW---TSVAYQETKAGSTT 869 + AN ++ + EL Q + T+ Q + Sbjct: 284 KPAAGLGIKLATGANALDTAKAIKAKLAEL-QPFFPQGMKVLYPYDTTPFVQLSIHEVVK 342 Query: 870 MLIFGMALLVAFLVLSAQYESWTSPLAAIMGLPIALLGAILGCFIMGVPVSVYTQIGIIL 929 L + L FLV+ ++ + L + +P+ LLG G ++ T G++L Sbjct: 343 TLFEAIML--VFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVL 400 Query: 930 LIALSAKNGILIVE-FARDYRAAGNPIREAALEAGHVRLRPILMTSFAFVLGVMPLLFAT 988 I L + I++VE R P +EA ++ ++ + +P+ F Sbjct: 401 AIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFG 460 Query: 989 GAGAASRVSLGAAVVFGMAINTIFATAFIPSFYEWM 1024 G+ A +V MA++ + A P+ + Sbjct: 461 GSTGAIYRQFSITIVSAMALSVLVALILTPALCATL 496
>PF06580#Sensor histidine kinase Length = 349 Score = 152 bits (385), Expect = 2e-45 Identities = 77/333 (23%), Positives = 136/333 (40%), Gaps = 17/333 (5%) Query: 23 FLLFSLSMLIISVNIYLDVIEGKEYLTRNCIVQSLILLIPIYLSVFILTPRLLLKNKLGK 82 + L + + L + N + + L++ FI L N Sbjct: 23 YTLTGFGFASLYGSPKLH------SMIFNIAISLMGLVLTHAYRSFIKRQGWLKLNMGQI 76 Query: 83 YVFFVFLVIALAILFSYLLRQEDIEREYELYQFWLSAF---FFISSVIQVSLIIAGASAV 139 + + + + +++ + I R AF +S + V ++ S + Sbjct: 77 ILRVLPACVVIGMVW--FVANTSIWRLLAFINTKPVAFTLPLALSIIFNVVVVTFMWSLL 134 Query: 140 IVFQDYVK--YGQRIDELENATM--QSELEQLKNQINPHFLFNMLNNANVLIKENPVEAV 195 + K ID+ + A+M +++L LK QINPHF+FN LNN LI E+P +A Sbjct: 135 YFGWHFFKNYKQAEIDQWKMASMAQEAQLMALKAQINPHFMFNALNNIRALILEDPTKAR 194 Query: 196 HVLSKLKDLLKYQLKDSTSETVYLADDIRFLTDYLNMEKIR-RDNFDFIISTEGETAHIT 254 +L+ L +L++Y L+ S + V LAD++ + YL + I+ D F + Sbjct: 195 EMLTSLSELMRYSLRYSNARQVSLADELTVVDSYLQLASIQFEDRLQFENQINPAIMDVQ 254 Query: 255 VPPLLFIPFVENAVKHN-NDNRKLSYVHLYFKTKEEQLIFICINSKPAEQKEKPVDGGIG 313 VPP+L VEN +KH + + L + N+ K G G Sbjct: 255 VPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKESTGTG 314 Query: 314 LANISRRLQLLYDTDCSLQINETDITYTVNLRL 346 L N+ RLQ+LY T+ ++++E + + Sbjct: 315 LQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLI 347
>PF06580#Sensor histidine kinase Length = 349 Score = 98.8 bits (246), Expect = 2e-25 Identities = 60/329 (18%), Positives = 129/329 (39%), Gaps = 22/329 (6%) Query: 24 GRHLLLVLFFTFVAFNMPYLTCAGFLDEVGGVIGYVSGLLLAFYLGGIYLHMYVLLPGLL 83 G + L F + + P L F + + GL+L L + Sbjct: 21 GVYTLTGFGFASLYGS-PKLHSMIF-----NIAISLMGLVLTHAYRSFIKRQGWLKLNMG 74 Query: 84 LKNRYVLYIIIVSLLILVMIVVSFGSDYWLNRYSGQEPGYYSFFYKNRIMAVEIVSNFFL 143 +L ++ ++I ++ V+ S + L + +P + + + + F + Sbjct: 75 QI---ILRVLPACVVIGMVWFVANTSIWRLLAFINTKPVAF-------TLPLALSIIFNV 124 Query: 144 YGLLIAGTSITILLRHWMGFYQRK---NELEKVSLKTELESLKDQINPEFLFNMLDEAGR 200 + + + + + Q + ++ ++ + +L +LK QINP F+FN L+ Sbjct: 125 VVVTFMWSLLYFGWHFFKNYKQAEIDQWKMASMAQEAQLMALKAQINPHFMFNALNNIRA 184 Query: 201 QTFDNPEQASKVLMELSRLLRYQLYDGKREKVLLISEISFIERFLELAKMKYAN-LSFTV 259 ++P +A ++L LS L+RY L +V L E++ ++ +L+LA +++ + L F Sbjct: 185 LILEDPTKAREMLTSLSELMRYSLRYSNARQVSLADELTVVDSYLQLASIQFEDRLQFEN 244 Query: 260 TKEGEVSRKLVPPLLFIPFAIHYIKQ-LSSEESRMDIYFCFRAGERELFFSCICFAPGLP 318 + VPP+L + IK ++ I + Sbjct: 245 QINPAIMDVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLAL 304 Query: 319 DGQKEHNE-DLEDVKHRLDLLFKDAYKLE 346 KE L++V+ RL +L+ +++ Sbjct: 305 KNTKESTGTGLQNVRERLQMLYGTEAQIK 333
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 54.5 bits (131), Expect = 1e-10 Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 9/126 (7%) Query: 4 LIIEDEKAAVRNLTALLSEAAPHIGVVAVLDSIAESIDWFRANAMPDLIFLDIHLADGSA 63 L+ +D+ A L LS A V + A W A DL+ D+ + D +A Sbjct: 7 LVADDDAAIRTVLNQALSRAG--YDVRIT-SNAATLWRWIAA-GDGDLVVTDVVMPDENA 62 Query: 64 FEIFEHV---DISCPIIFTTAYD--EYALRAFKVNSIDYLLKPIGGSDIRKAIGKLEQLR 118 F++ + P++ +A + A++A + + DYL KP +++ IG+ Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122 Query: 119 SEAPSK 124 PSK Sbjct: 123 KRRPSK 128
>PF06580#Sensor histidine kinase Length = 349 Score = 161 bits (408), Expect = 1e-48 Identities = 62/226 (27%), Positives = 118/226 (52%), Gaps = 9/226 (3%) Query: 127 RDFIITCIVTGSCYMIHLLRKSQQVLVENQQLRTENLVNQYEALKNQLNPHMLFNSLNTL 186 ++T + + + H + +Q ++ ++ + Q ALK Q+NPH +FN+LN + Sbjct: 123 NVVVVTFMWSLLYFGWHFFKNYKQAEIDQWKMASMAQEAQLMALKAQINPHFMFNALNNI 182 Query: 187 RSLIRETPDKAQDYLQELSRVLRYTLQENESQSVTLREEMEFVTAYIFLLKMRYEDNLEF 246 R+LI E P KA++ L LS ++RY+L+ + ++ V+L +E+ V +Y+ L +++ED L+F Sbjct: 183 RALILEDPTKAREMLTSLSELMRYSLRYSNARQVSLADELTVVDSYLQLASIQFEDRLQF 242 Query: 247 DIRIDEAVGARQLPPMSVQLLVENAVKHNEISNRHP--LVIRVFTEGNRLTVS---NPVQ 301 + +I+ A+ Q+PPM VQ LVEN +KH ++++ + +T+ Sbjct: 243 ENQINPAIMDVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSL 302 Query: 302 RKLTASGGLQIGLANLAKRYNLLFKEE----IEVREENNTFIVTIP 343 GL N+ +R +L+ E + ++ +V IP Sbjct: 303 ALKNTKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLIP 348
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 39.0 bits (91), Expect = 1e-05 Identities = 27/201 (13%), Positives = 66/201 (32%), Gaps = 21/201 (10%) Query: 110 LQQSYLEAHAQTEYLEAEYHRQER-LSSQEAASQKRFQQSKADYLSMKSRLEAAAAQLTI 168 + Y+EA + +++ + E + S + Q Q K + L + LT+ Sbjct: 257 QENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTL 316 Query: 169 LGVTPGDLLKDGIRPYLEVKSPLNGYVTGM-ILNLGKYINAGEPVCEVIDKGETLLCLTA 227 + + +++P++ V + + G + E + ++ + +TL Sbjct: 317 ELAKNEERQQ-----ASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTAL 371 Query: 228 Y-EKDLDDLAPGSRIQFRVNGMGKQTF---DATLLSVGQEVDAVNRSLEIY--------- 274 KD+ + G +V + + ++ + R ++ Sbjct: 372 VQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVIISIEEN 431 Query: 275 -ARVKGNHERFRPGMYVTARV 294 + GM VTA + Sbjct: 432 CLSTGNKNIPLSSGMAVTAEI 452 Score = 37.1 bits (86), Expect = 6e-05 Identities = 18/116 (15%), Positives = 32/116 (27%), Gaps = 11/116 (9%) Query: 65 IVPPQRHATVTLTMGGTVHSTPLLPGDYVKKGAVLATLE----NPDFILLQQSYLEAHAQ 120 + R + V + G+ V+KG VL L D + Q S L+A + Sbjct: 90 LTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLE 149 Query: 121 TEYLEAEYHRQER-------LSSQEAASQKRFQQSKADYLSMKSRLEAAAAQLTIL 169 + E L + ++ +K + Q Sbjct: 150 QTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQK 205
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 687 bits (1775), Expect = 0.0 Identities = 217/1049 (20%), Positives = 424/1049 (40%), Gaps = 42/1049 (4%) Query: 5 IVHFSIHKKLFVGLTTLFLLIGGIYAMLTLPIDAVPDITNNQVQIVTVSPTLAPQEVEQL 64 + +F I + +F + + L++ G A+L LP+ P I V + P Q V+ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 65 ITFPIEIAMSNIMNVEEIRSVS-RFGLSLVTVVFKESVPTLDARQLINEQIQTVAGEIPA 123 +T IE M+ I N+ + S S G +T+ F+ A+ + ++Q +P Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 124 ELGMPELMPITTGLGEIYQYVLKVAPGYEDRYDAMELRTIQDWIVKRQLSGIPGIVEINS 183 E+ + + + ++ VK LS + G+ ++ Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVS---DNPGTTQDDISDYVASNVKDTLSRLNGVGDVQL 177 Query: 184 FGGYLKQYEVAVDPDALYSLNITIGDVYSALSSNNQNTGG------SYIEKVNRAYYIRS 237 FG + +D D L +T DV + L N + I + Sbjct: 178 FGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIA 236 Query: 238 EGMISDAKDIERIVI-TNRGGIPIHISDVGTVRFGAPKRFGAMTKDGEGECVGGIAMMLK 296 + + ++ ++ + N G + + DV V G +G+ G + Sbjct: 237 QTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGK-PAAGLGIKLAT 295 Query: 297 GANANVVTKELEARVEKVQKMLPEGVSVEPYLNRSELVNRNISTVVRNLIEGALIVFLVL 356 GANA K ++A++ ++Q P+G+ V + + V +I VV+ L E ++VFLV+ Sbjct: 296 GANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVM 355 Query: 357 IVFLGNVRAGLIVASVIPLAMLFGFILMRVFGVSANLMSLG--AIDFGIVVDGSIVILEG 414 +FL N+RA LI +P+ +L F ++ FG S N +++ + G++VD +IV++E Sbjct: 356 YLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVEN 415 Query: 415 ILAHIYTKRLAGRTLTQAELDREVEAGASGVVRSATFAVLIILIVFFPILTLTGIEGKYF 474 + + +L + T+ + + + + +++ VF P+ G G + Sbjct: 416 VERVMMEDKLPPKEATEKSMSQ--------IQGALVGIAMVLSAVFIPMAFFGGSTGAIY 467 Query: 475 TPMAKTLVFCIIGALILSLTYVPMMASLFLK-------RTISAKPTFADRFFDKLNVFYK 527 + T+V + +++++L P + + LK + + FD Y Sbjct: 468 RQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYT 527 Query: 528 RGLRFCLHHAWATVGSAFALLAASLLLFIRLGAEFIPTLDEGDFAMQMTLPAGSSLTQSI 587 + L + ++A ++LF+RL + F+P D+G F + LPAG++ ++ Sbjct: 528 NSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQ 587 Query: 588 ELSSRAQKTLMKQFPEIKHVVAKIGTAEVPTDPMAVEDADVMIIMKPFKEWTSASSRAEM 647 ++ + +K E +V + A + +KP++E + AE Sbjct: 588 KVLDQVTDYYLKN--EKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEA 645 Query: 648 VEKMKKALETVEGAEFNFSQPIQL-RFNELMTGAKADIA-IKLYGEDMEELYTRAKEAAT 705 V + +A + F P + EL T D I G + L + Sbjct: 646 V--IHRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLG 703 Query: 706 YVEQVPGA-ADVIVEQAMGLPQLVVRYNRGKIARYGMNIEELNTIIRTAYAGEAAGVIFE 764 Q P + V Q + ++ K G+++ ++N I TA G + Sbjct: 704 MAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFID 763 Query: 765 NERRFDLVLRLDNDKVSDLN-LDKLFVRTAEGIQIPVSEVASIELVNGPLQINRDATKRR 823 R L ++ D +DKL+VR+A G +P S + V G ++ R Sbjct: 764 RGRVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPS 823 Query: 824 IVIGVNVRDADIQQVVSQIQDTLEKNIKLKPGYYFEYGGQFENLQNAINTLLVVIPVALA 883 + I + + L KL G +++ G + + N ++ ++ Sbjct: 824 MEIQGEAAPGTSSGDAMALMENLAS--KLPAGIGYDWTGMSYQERLSGNQAPALVAISFV 881 Query: 884 LILLLLFFAFKSVTYTLVVFSTVPLSLIGGIVALWLRGLPFSISAGVGFIALFGVAVLNG 943 ++ L L ++S + + V VPL ++G ++A L + VG + G++ N Sbjct: 882 VVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNA 941 Query: 944 ILMINHFNDLRKRNRYTMSTNRIIARGCPHLLRPVFLTGLVASLGFVPMAIARSAGAEVQ 1003 IL++ DL ++ LRP+ +T L LG +P+AI+ AG+ Q Sbjct: 942 ILIVEFAKDLMEKE--GKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQ 999 Query: 1004 RPLATVVIGGLIVSTVLTLLIIPVFYRMV 1032 + V+GG++ +T+L + +PVF+ ++ Sbjct: 1000 NAVGIGVMGGMVSATLLAIFFVPVFFVVI 1028 Score = 102 bits (257), Expect = 4e-24 Identities = 84/528 (15%), Positives = 204/528 (38%), Gaps = 59/528 (11%) Query: 9 SIHKKLFVGLTTLFLLIGGIYAMLTLPIDAVPDITNNQVQIVTVSPTLAPQE-VEQLITF 67 + L ++ G + L LP +P+ + P A QE ++++ Sbjct: 533 ILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQ 592 Query: 68 PIEIAMSNIM-NVEEIRSVSRF---------GLSLVTVV-FKESVPTLDARQLINEQIQT 116 + + N NVE + +V+ F G++ V++ ++E ++ + + + + Sbjct: 593 VTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKM 652 Query: 117 VAGEIPAELGMPELMPITTGLGEI----YQYVLKVAPGYEDRYDAM-ELRTIQDWIVKRQ 171 G+I +P MP LG ++ + + G++ A +L + Sbjct: 653 ELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASL 712 Query: 172 LSGIPGIVEINSFGGYLKQYEVAVDPDALYSLNITIGDVYSALSSNNQNTGGSYIEKVN- 230 +S P +E + Q+++ VD + +L +++ D+ +S+ GG+Y+ Sbjct: 713 VSVRPNGLEDTA------QFKLEVDQEKAQALGVSLSDINQTISTA---LGGTYVNDFID 763 Query: 231 --RAY--YIRSEGMI-SDAKDIERIVITNRGGIPIHISDVGTVR--FGAP--KRFGAMTK 281 R Y++++ +D++++ + + G + S T +G+P +R+ + Sbjct: 764 RGRVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGL-- 821 Query: 282 DGEGECVGGIAMMLKGANAN-VVTKELEARVEKVQKMLPEGVSVEPYLNRSELVNRNIST 340 +M ++G A + + A +E + LP G+ + + S + + Sbjct: 822 ---------PSMEIQGEAAPGTSSGDAMALMENLASKLPAGIGYD-WTGMSYQERLSGNQ 871 Query: 341 VVRNLIEGALIVFLVLIVFLGNVRAGLIVASVIPLAMLFGFILMRVFGVSANLMSL-GAI 399 + ++VFL L + + V V+PL ++ + +F ++ + G + Sbjct: 872 APALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLL 931 Query: 400 D-FGIVVDGSIVILEGILAHIYTKRLAGRTLTQAELDREVEAGASGVVRSATFAVLIILI 458 G+ +I+I+E G+ + +A L +R L ++ Sbjct: 932 TTIGLSAKNAILIVEFAKD---LMEKEGKGVVEATLM-----AVRMRLRPILMTSLAFIL 983 Query: 459 VFFPILTLTGIEGKYFTPMAKTLVFCIIGALILSLTYVPMMASLFLKR 506 P+ G + ++ ++ A +L++ +VP+ + + Sbjct: 984 GVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFVVIRRC 1031
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 76.4 bits (188), Expect = 1e-19 Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 4/120 (3%) Query: 2 KQSILLVDDKPEIAKIIMLYLSSL-YDVTYRENPIKAIAWLNEGNIPDGVISDLNMPEMS 60 +IL+ DD I ++ LS YDV N W+ G D V++D+ MP+ + Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAG-DGDLVVTDVVMPDEN 61 Query: 61 GEEFLCYLKANALFNHIPVLILSSVESSANRIRLFEEGAEDFILKPFNPEELRVRVKRLL 120 + L +K +PVL++S+ + I+ E+GA D++ KPF+ EL + R L Sbjct: 62 AFDLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 101 bits (253), Expect = 1e-25 Identities = 32/146 (21%), Positives = 67/146 (45%), Gaps = 9/146 (6%) Query: 9 TVLIVDDVPTNVMLVQAILKKEGYRLLTCDSGAKALRLAHDKHPNLILLDIMMPEMDGYE 68 T+L+ DD ++ L + GY + + A R +L++ D++MP+ + ++ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 69 VLQHLKS-NPDTNDIPVIIMSALSDMQSIVKGYQLGATEYVTKPFQREELVKRVAHRFEL 127 +L +K P D+PV++MSA + + +K + GA +Y+ KPF EL+ + Sbjct: 65 LLPRIKKARP---DLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR---- 117 Query: 128 FSIKRIKQELENTIESRDTLYSVIAH 153 ++ K+ + ++ Sbjct: 118 -ALAEPKRRPSKLEDDSQDGMPLVGR 142
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 39.5 bits (92), Expect = 2e-06 Identities = 22/105 (20%), Positives = 43/105 (40%), Gaps = 5/105 (4%) Query: 28 YEQRTVEQQQDAFSDSRYHLD----CHIDPVNDLLLGFIAYWR-FDSYTYVEHFAIHPNE 82 + + +Q +D D Y + + + + +G I ++ Y +E A+ + Sbjct: 42 FSKPYFKQYEDDDMDVSYVEEEGKAAFLYYLENNCIGRIKIRSNWNGYALIEDIAVAKDY 101 Query: 83 RGKGLGGLILKNLIEQESGRVLLEIDPVTDNVSAARLHFYQLHGF 127 R KG+G +L IE + T +++ + HFY H F Sbjct: 102 RKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHF 146
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 476 bits (1227), Expect = e-153 Identities = 238/1052 (22%), Positives = 446/1052 (42%), Gaps = 65/1052 (6%) Query: 3 IPKYSLENTKIIYFFLAVMLIGGIYSFFKLPKKEDAPFVIKQAVLVTQYPGATPFEVEKL 62 + + + + ++++ G + +LP + + YPGA V+ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 63 VTEPIEREIQSMSDVLQIKSES-YFGMSKISIELQPTLDPDNMPVKWDELRRKVANIEPR 121 VT+ IE+ + + +++ + S S G I++ Q DPD V +++ K+ P Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQV---QVQNKLQLATPL 117 Query: 122 LPSGASSISVS-DDFGDVFGIYYALSADDG-YTYDELRDWAQK-IKTELSPVPGVQKVYL 178 LP +S + + + +D+ T D++ D+ +K LS + GV V L Sbjct: 118 LPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQL 177 Query: 179 FGEQTQVINVRISVPKLANLGIDPNSIQQVLQTQNLLVNTGDINTGNY------QLRVRA 232 FG Q + + + L + P + L+ QN + G + + A Sbjct: 178 FGAQYAM-RIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIA 236 Query: 233 EGTYKNIQDIRDQLI-VTKSGSEVRLGDIAIVERGYMDPPSNLMRVDGKRAIGIGVATGA 291 + +KN ++ + V GS VRL D+A VE G + + + R++GK A G+G+ Sbjct: 237 QTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELG-GENYNVIARINGKPAAGLGIKLAT 295 Query: 292 KDDVVAVGNDVAAHLQEMEQLFPVGMDLKTIYPENKIADEANNGFILNLIESLLIVIVVI 351 + + + A L E++ FP GM + Y + + + L E++++V +V+ Sbjct: 296 GANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVM 355 Query: 352 FLVMGS-RAGMLVGSSLLFSVGGTLLLMLIWGVGLNRTSLAAFIIAMGMLVDNAIVVTDN 410 +L + + RA ++ ++ + GT ++ +G +N ++ ++A+G+LVD+AIVV +N Sbjct: 356 YLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVEN 415 Query: 411 AQ-VGIKRGLSRYQALIDGATKPQWALLGATFIAVCSFLPMYLAPASVAEIVKPLFIVLA 469 + V ++ L +A ++ Q AL+G + F+PM S I + I + Sbjct: 416 VERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIV 475 Query: 470 VSLGLSWVLALTQTTTFGNFILKEAKPGESKDP----------YDTKLYHKFEGVLGRLI 519 ++ LS ++AL T +LK ++ +D + + +G+++ Sbjct: 476 SAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFD-HSVNHYTNSVGKIL 534 Query: 520 KRRWITITSVIATLFLSLFIMSIMPQSFFPIMNKPYFRADLIFPEGYSIYDVEKNVKLIE 579 + + + + +P SF P ++ F + P G + +K + + Sbjct: 535 GSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVT 594 Query: 580 DYLSKNE--NIKSYSFTLGGSPVRYYLASSSVGPKPNFANVLIETK-KAEDAQAEEGKFY 636 DY KNE N++S FT+ G S G N + K E E Sbjct: 595 DYYLKNEKANVES-VFTVNG--------FSFSGQAQNAGMAFVSLKPWEERNGDENSAEA 645 Query: 637 DYMVANYPDILTRSAL---FALSPVPDAAIEIGF-------IGDNVDTLVALTEQVKEIA 686 A R F + + + GF G D L Q+ +A Sbjct: 646 VIHRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMA 705 Query: 687 RQY-DQVMEVRDSWGNKVPVWKPMYSQEKGLRLGITRQQVAYSLRSATNGVPLGEYREGD 745 Q+ ++ VR + +K QEK LG++ + ++ +A G + ++ + Sbjct: 706 AQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRG 765 Query: 746 VFMPILMKDADRDSMNLNDIRTLPVYSAKGRSVKVEQVIDDFSLDYEYNVVRRYNRQPYM 805 + ++ + M D+ L V SA G V Y + RYN P M Sbjct: 766 RVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFT-TSHWVYGSPRLERYNGLPSM 824 Query: 806 MMQCEPKRGANTMAAFSHLWTEAQKQIQVPEGYKMTYFGE-QSEQDKGNKAIAANIPLMF 864 +Q E G ++ A + E ++P G + G E+ GN+A A + + F Sbjct: 825 EIQGEAAPGTSSGDAMA--LMENLAS-KLPAGIGYDWTGMSYQERLSGNQAPAL-VAISF 880 Query: 865 GLIYVTLLFLFPKYYRKPVLIMAMLPLIFIGVVLGLLVFGKSLDFFAMLGLLGLIGMNIK 924 ++++ L L+ + + PV +M ++PL +GV+L +F + D + M+GLL IG++ K Sbjct: 881 VVVFLCLAALY-ESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAK 939 Query: 925 NAIVLVDEI-GLQMDSGLAPVNAVIEATKTRIVPVTMASGTTILGMLPLL-----GDAMF 978 NAI++V+ L G V A + A + R+ P+ M S ILG+LPL G Sbjct: 940 NAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQ 999 Query: 979 AGMAATIMGGLFVSTILTIFVLPVTYCIFFKI 1010 + +MGG+ +T+L IF +PV + + + Sbjct: 1000 NAVGIGVMGGMVSATLLAIFFVPVFFVVIRRC 1031
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 37.5 bits (87), Expect = 7e-05 Identities = 18/121 (14%), Positives = 46/121 (38%), Gaps = 3/121 (2%) Query: 70 VEEGQKVRTGQIVAEIDPQDFKWDYEAKKASFQTAQAQLQRAERLLAKQAISQQEYE--S 127 V+EG+ VR G ++ ++ + D ++S A+ + R + L +++ Sbjct: 112 VKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLP 171 Query: 128 TKAAYSNAQAAFENSQNTLEQTKLRAPFDGFIQKKYVENYQKVQMGQGIVCLINPNKLQV 187 + + N +L + + + QK+ + +K ++ IN + Sbjct: 172 DEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKE-LNLDKKRAERLTVLARINRYENLS 230 Query: 188 Q 188 + Sbjct: 231 R 231
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 86.7 bits (215), Expect = 6e-26 Identities = 33/84 (39%), Positives = 47/84 (55%) Query: 2 NKRDLVVSLSERLSLTQSQSVEIVNAWEGVLTDALQSGERLTLQGFGTFFAWSQTERTGR 61 NK+DL+ ++E LT+ S V+A ++ L GE++ L GFG F + R GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGR 62 Query: 62 NPRTGETCRIEARVSVKFKPGKFL 85 NP+TGE +I+A FK GK L Sbjct: 63 NPQTGEEIKIKASKVPAFKAGKAL 86
>INTIMIN#Intimin signature. Length = 939 Score = 30.8 bits (69), Expect = 0.019 Identities = 29/133 (21%), Positives = 48/133 (36%), Gaps = 11/133 (8%) Query: 490 TIQLTNVASGKTLDVIVVPKDQTGPEISLVE---EESNNNTYNAATRTVTLLNEDGQAIQ 546 IQ + S + I+ Q G + V + N N+ N T+T+L+ Q Sbjct: 498 QIQHSGSQSAQDYQAILPAYVQGGSNVYKVTARAYDRNGNSSNNVLLTITVLSNGQVVDQ 557 Query: 547 LKATAVAIP-------GESPETGSSTVSADNWIQVS-PASSAEAEGVYTITLPTAKDNAT 598 + T G T ++TV + Q + P S G ++ +A N + Sbjct: 558 VGVTDFTADKTSAKADGTEAITYTATVKKNGVAQANVPVSFNIVSGTAVLSANSANTNGS 617 Query: 599 YTTTLTFTSTATG 611 T+T S G Sbjct: 618 GKATVTLKSDKPG 630
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 51.7 bits (124), Expect = 4e-09 Identities = 34/159 (21%), Positives = 59/159 (37%), Gaps = 23/159 (14%) Query: 5 LIKNARIVNEGRMFKGSVLIDGDKIAEVFEEVVPETASNV--------QVIDAEGKLLLP 56 +I NA I++ + K + + +IA + + P+ V +VI EGK++ Sbjct: 71 VITNALILDHWGIVKADIGLKDGRIAAIGKAGNPDMQPGVTIIVGPGTEVIAGEGKIVTA 130 Query: 57 GAIDDQVHFREPGLTHKGDIASESRAAVAGGVTSFMDM---PNTKPQTTTIADLEWKLQR 113 G +D +HF P + A+ G+T + P TT W + R Sbjct: 131 GGMDSHIHFICP---------QQIEEALMSGLTCMLGGGTGPAHGTLATTCTPGPWHIAR 181 Query: 114 ---GAETSAANYSFFFGGTNDNMDEIRKLDRSRVPGLKL 149 A+ N +F G + ++ LKL Sbjct: 182 MIEAADAFPMNLAFAGKGNASLPGALVEMVLGGATSLKL 220
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 33.9 bits (78), Expect = 4e-05 Identities = 11/45 (24%), Positives = 26/45 (57%) Query: 39 ICSRISKYSTASRGDILLVLDGLLSVMNESLADGESIHLGDFGSF 83 + +++++ + ++ D +D + S ++ LA GE + L FG+F Sbjct: 7 LIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNF 51
>FLGFLGJ#Flagellar protein FlgJ signature. Length = 313 Score = 58.6 bits (141), Expect = 4e-13 Identities = 37/145 (25%), Positives = 69/145 (47%), Gaps = 24/145 (16%) Query: 4 QEYIKQYLFPAQKAGECFGINPIVILAQSAIETGWGESTLAKEH----HNFFGITAYGRP 59 + ++ Q PAQ A + G+ +ILAQ+A+E+GWG+ + +E+ +N FG+ A Sbjct: 150 KAFLAQLSLPAQLASQQSGVPHHLILAQAALESGWGQRQIRRENGEPSYNLFGVKA---- 205 Query: 60 NAFWKGEKTDLSENSGHTSL------WFRTYESAEDSFMDFARLI-----HTAYPVAAS- 107 + WKG T+++ FR Y S ++ D+ L+ + A AAS Sbjct: 206 SGNWKGPVTEITTTEYENGEAKKVKAKFRVYSSYLEALSDYVGLLTRNPRYAAVTTAASA 265 Query: 108 ----LSAHPSAYAKEIAYSKYISEV 128 + + YA + Y++ ++ + Sbjct: 266 EQGAQALQDAGYATDPHYARKLTNM 290
>INTIMIN#Intimin signature. Length = 939 Score = 30.4 bits (68), Expect = 0.014 Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 11/95 (11%) Query: 129 LTITVSKQGTYQ-----TDFTTTQPNMEGNSKSTFTFNATIKNRTAEQQLYALTADVQRG 183 LTITV G TDFT + + + + T+ AT+K Q A+V Sbjct: 544 LTITVLSNGQVVDQVGVTDFTADKTSAKADGTEAITYTATVKKNGVAQ------ANVPVS 597 Query: 184 WNVVFKPNYKQATSAQVEPNATQNITIDVNPPANV 218 +N+V A SA + +T+ + P V Sbjct: 598 FNIVSGTAVLSANSANTNGSGKATVTLKSDKPGQV 632
>ENTEROVIROMP#Enterobacterial virulence outer membrane protein signature. Length = 171 Score = 40.7 bits (95), Expect = 7e-07 Identities = 32/150 (21%), Positives = 54/150 (36%), Gaps = 15/150 (10%) Query: 24 AQEKGDMAAGLNLSYGTKSGYSNFGVGAKFQYSFTDALRIEPSATYFFKKDYVSMWDINV 83 AQ + + G NL Y + S GV F Y+ S+ + K Y + Sbjct: 37 AQGQMNKMGGFNLKYRYEEDNSPLGVIGSFTYTEKS---RTASSGDYNKNQYYG-----I 88 Query: 84 NLHYLFHVADKFAFYPLAGVSLLGAKADLGDSLKEYGVKASASETKFGANLGAGAQYWLT 143 + + D + Y + GV + + K + +G + GAG Q+ Sbjct: 89 TAGPAYRINDWASIYGVVGVGYGKFQTTEYPTYKH-------DTSDYGFSYGAGLQFNPM 141 Query: 144 DNFALAFEIKYQLVSDYDRPVFTLGAAYKF 173 +N AL F + + D + G Y+F Sbjct: 142 ENVALDFSYEQSRIRSVDVGTWIAGVGYRF 171
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 95.0 bits (236), Expect = 1e-23 Identities = 38/111 (34%), Positives = 63/111 (56%), Gaps = 11/111 (9%) Query: 342 ITFDVGKSTIKPESMGEINRIVTLMKEN--PDLKFSVEGHTDSTGNEASNQTLSEARSKA 399 + F+ K+T+KPE ++++ + + D V G+TD G++A NQ LSE R+++ Sbjct: 221 VLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQS 280 Query: 400 IVDKLIELGIATDRLTASGKGQSSPIADNGTDEGR---------AKNRRVE 441 +VD LI GI D+++A G G+S+P+ N D + A +RRVE Sbjct: 281 VVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVE 331
>MECHCHANNEL#Bacterial mechano-sensitive ion channel signature. Length = 136 Score = 24.8 bits (54), Expect = 0.036 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%) Query: 30 KVLQRLKKEKAAKEEMSAAEKEE-ILNDIRDGLRE 63 K++ +L ++K A KEE +L +IRD L+E Sbjct: 97 KLINKLNRKKEEPAAAPAPTKEEVLLTEIRDLLKE 131
>PF06917#Periplasmic pectate lyase Length = 555 Score = 30.7 bits (69), Expect = 0.018 Identities = 46/185 (24%), Positives = 65/185 (35%), Gaps = 45/185 (24%) Query: 311 IYTEADELAKRARREAAVTWRKYLAEQIELNR------GLYPQSMSLQADLVKAGMIPAC 364 IY A + A+ AA W K+L Q L R +Y S Q IPA Sbjct: 226 IYA-AYKYAEYTGDAAAAAWGKHLYRQYVLARNPETGLPVYQFSSPQQRQ-----PIPAD 279 Query: 365 AEKRASLNIVTICANFLDQAYSEFPEPEFTPVCKENIMKFPKNERMMRAESGYATSVDGF 424 + S + D+A +F PEF + +E + F R MR +D Sbjct: 280 DNQTQSW--------YGDRAKRQF-GPEFGEIAREANVLF----RDMR-----PLLIDNP 321 Query: 425 LSGCVI-----------WTIDE-ENGTEYIY--ENGKKREMDAKGRQAIKQQQQKREDYE 470 L+ I W ID +N + Y E+ R + G Q + R+ Y Sbjct: 322 LAMLDILRQQPDAEVLQWVIDGLKNYYRFAYDVESNTLRPLWNDG-QDMSGYVLPRDGYY 380 Query: 471 PPYGT 475 GT Sbjct: 381 GVKGT 385
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 28.1 bits (62), Expect = 0.016 Identities = 15/31 (48%), Positives = 24/31 (77%) Query: 75 AAEERLQAARDEKILREKAEAEERARREAEE 105 A +ERL+ A+ E+ R++AEA E+A +EAE+ Sbjct: 125 AEDERLRLAKAEEKARKEAEAAEKAFQEAEQ 155
>PERTACTIN#Pertactin signature. Length = 922 Score = 31.6 bits (71), Expect = 0.001 Identities = 17/44 (38%), Positives = 18/44 (40%) Query: 32 PTPAQQVRPQASPVYAQPQTAPPPQQAYTAQPYAAQPYTPAPDP 75 P P +P P PQ PPQ QP QP PAP P Sbjct: 569 PAPKPAPQPGPQPGPQPPQPPQPPQPPQPPQPPQRQPEAPAPQP 612
>PERTACTIN#Pertactin signature. Length = 922 Score = 42.4 bits (99), Expect = 5e-07 Identities = 28/69 (40%), Positives = 33/69 (47%), Gaps = 2/69 (2%) Query: 14 GVKFCPACGAPMAAAAPTPEAPPQPAAAPQ--QQYQQPQPVQQPPQAQQPQPAAGDTFSN 71 + A AP A P P+ PQP PQ Q Q PQP Q+ P+A PQP AG S Sbjct: 561 SLVGAKAPPAPKPAPQPGPQPGPQPPQPPQPPQPPQPPQPPQRQPEAPAPQPPAGRELSA 620 Query: 72 LNNTADSTA 80 N A +T Sbjct: 621 AANAAVNTG 629
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 30.2 bits (68), Expect = 0.017 Identities = 12/81 (14%), Positives = 33/81 (40%), Gaps = 3/81 (3%) Query: 12 QFGWIKLGLGLLNILIAVVLFAIMMGIAVLFDSGGV-GAIMFIIWLSLIGIV--NFFLNH 68 +L L+A+ + + +A L++S + ++M ++ L ++G++ N Sbjct: 861 MSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQ 920 Query: 69 YIGYLVKAGHVAVITIAFQTG 89 G + I ++ + Sbjct: 921 KNDVYFMVGLLTTIGLSAKNA 941
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 28.7 bits (64), Expect = 0.009 Identities = 34/158 (21%), Positives = 56/158 (35%), Gaps = 32/158 (20%) Query: 22 QQGQSSFGFNLGYGFNDNGNALLGLDYRYNLTDEVRLAPSLTYFVKDNGISACAIDMNVH 81 Q G +FG GY N +G D+ + + V++ A + + Sbjct: 55 QLGAGAFG---GYQVNPYVGFEMGYDWLGRMPYKGS--------VENGAYKAQGVQLTAK 103 Query: 82 YVFKLSDMFGFYPLAGLDLSFWKWSGKGHVDG--HKVKVSQNETRFGANVGLGGEVYATN 139 + ++D Y G W+ K +V G H VS V GG YA Sbjct: 104 LGYPITDDLDIYTRLG--GMVWRADTKSNVYGKNHDTGVSP--------VFAGGVEYAIT 153 Query: 140 -QLTVGLEFKY--------NIIKDFDQPILALRIGYNF 168 ++ LE+++ I D +L+L + Y F Sbjct: 154 PEIATRLEYQWTNNIGDAHTIGTRPDNGMLSLGVSYRF 191
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 44.5 bits (105), Expect = 3e-07 Identities = 27/117 (23%), Positives = 56/117 (47%), Gaps = 2/117 (1%) Query: 255 SLVLLVAVSILYALVSLCLGLLISTIADTQQAAMLISAMVLMLPVILLSGMVFPIENMPD 314 SL+ + V L L LG++++ +A + + +V+ P++ LSG VFP++ +P Sbjct: 146 SLLYALPVIALTGLAFASLGMVVTALAPSYDYFIFYQTLVIT-PILFLSGAVFPVDQLPI 204 Query: 315 ILQWLSNIVPAKWYIIAVKDVMIKGLSAGAILKEIGILSFMVIFLVILSVKRFKTRL 371 + Q + +P I ++ +M+ + + +G L ++ LS + RL Sbjct: 205 VFQTAARFLPLSHSIDLIRPIMLGH-PVVDVCQHVGALCIYIVIPFFLSTALLRRRL 260
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 52.1 bits (125), Expect = 1e-09 Identities = 47/316 (14%), Positives = 101/316 (31%), Gaps = 47/316 (14%) Query: 7 RLNSYTLIATALLSLAACNRGDGDFDATGTFEATEILVSSEANGKIMELNIEEGDRLDAG 66 ++ ++ L + R + + E+ + E + N+ E + L Sbjct: 133 EADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQ----NVSEEEVLRLT 188 Query: 67 ALIGYVDSTQLYL---KKMQLSAGLRSVDIRKPDIRKQIAALEQQIATARTEQQRMENLV 123 +LI Q +K Q L + + +I E ++ +L+ Sbjct: 189 SLI----KEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLL 244 Query: 124 KAKAGNQKQVDDIVNNIKYLQKQLDAQYSTLNKTTGG-ADAEAEGILF------------ 170 +A + V + N +L S L + A+ E L Sbjct: 245 HKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKL 304 Query: 171 ------------QIMQLDDQLQKSRIVNPQAGTVL-VKYAEPGEVTAAGKPLYKIA-DTD 216 ++ + +++ Q S I P + V +K G V + L I + D Sbjct: 305 RQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDD 364 Query: 217 LLYLRAYITSDQLSTLKQGQTVRV-FADYGENDRREYPGTITWISDKSEFTPKGIQTKDE 275 L + A + + + + GQ + + G + I+ +D+ Sbjct: 365 TLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLD--------AIEDQ 416 Query: 276 RANLVYAIKIAVKNDG 291 R LV+ + I+++ + Sbjct: 417 RLGLVFNVIISIEENC 432
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 64.6 bits (157), Expect = 5e-15 Identities = 20/132 (15%), Positives = 53/132 (40%), Gaps = 10/132 (7%) Query: 12 RILEAAKQVFVRKGYEATKMGDVAAEAGIGRTALHYYYRTKEMLFDAIFDQLIDALLPNL 71 IL+ A ++F ++G +T +G++A AG+ R A++++++ K LF I++ + Sbjct: 15 HILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELE 74 Query: 72 GAIMEE-NTSFLEKLPKIIDQYVRTLQRNPLFPVFVINELQRDPEHIYHSILKNPARVEP 130 + L L +I+ + + + + + + Sbjct: 75 LEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFV---------GEMAV 125 Query: 131 IIRMRKQMEDEM 142 + + ++ + E Sbjct: 126 VQQAQRNLCLES 137
>PF01206#SirA family protein Length = 76 Score = 30.5 bits (69), Expect = 0.002 Identities = 9/34 (26%), Positives = 19/34 (55%), Gaps = 3/34 (8%) Query: 128 MSTIKDIQAWCEKTGHSYWEYVEQCEGPEIWDYL 161 ++KD +++ ++TGH E +EQ E + + Sbjct: 42 PGSVKDFESFSKQTGH---ELLEQKEEDGTYHFR 72
>FLGFLGJ#Flagellar protein FlgJ signature. Length = 313 Score = 58.6 bits (141), Expect = 4e-13 Identities = 37/145 (25%), Positives = 69/145 (47%), Gaps = 24/145 (16%) Query: 4 QEYIKQYLFPAQKAGECFGINPIVILAQSAIETGWGESTLAKEH----HNFFGITAYGRP 59 + ++ Q PAQ A + G+ +ILAQ+A+E+GWG+ + +E+ +N FG+ A Sbjct: 150 KAFLAQLSLPAQLASQQSGVPHHLILAQAALESGWGQRQIRRENGEPSYNLFGVKA---- 205 Query: 60 NAFWKGEKTDLSENSGHTSL------WFRTYESAEDSFMDFARLI-----HTAYPIAAS- 107 + WKG T+++ FR Y S ++ D+ L+ + A AAS Sbjct: 206 SGNWKGPVTEITTTEYENGEAKKVKAKFRVYSSYLEALSDYVGLLTRNPRYAAVTTAASA 265 Query: 108 ----LSAHPSAYAKEIAYSKYISEV 128 + + YA + Y++ ++ + Sbjct: 266 EQGAQALQDAGYATDPHYARKLTNM 290
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 97.8 bits (243), Expect = 1e-26 Identities = 56/260 (21%), Positives = 109/260 (41%), Gaps = 3/260 (1%) Query: 1 MSEQKLLGKVIVISGGTKGVGKAAAEEFARQGAKVVIGGRDEESALKSIRLMKTYGTEGL 60 M+ + + GK+ I+G +G+G+A A A QGA + + E K + +K Sbjct: 1 MNAKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAE 60 Query: 61 FVHTNLENVEDCKNLMDEAYNKFNRIDGFFNYAGVTPVSPLDICDEYTFDKVMDINFKSC 120 ++ + + + ID N AGV + + ++ +N Sbjct: 61 AFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGV 120 Query: 121 FFCCQQAIKYMRMNGGGSIVLTGSAHAWGGEKDRAAYACSKGVLRILMEHISHQYSREHI 180 F + KYM GSIV GS A AAYA SK + + + + + +I Sbjct: 121 FNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNI 180 Query: 181 RCNYLTLGWTPTEGEVALRISQGETETHLRERAGAY---LPMGRMCEKTDYLDGLVYMMS 237 RCN ++ G T T+ + +L + E ++ + +P+ ++ + +D D +++++S Sbjct: 181 RCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVS 240 Query: 238 DGSSMMTGSTFRITAGEYIG 257 + +T + G +G Sbjct: 241 GQAGHITMHNLCVDGGATLG 260
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 28.7 bits (64), Expect = 0.030 Identities = 11/27 (40%), Positives = 16/27 (59%) Query: 61 LADPEVYLNAVGDDLGATMGNIIDKSY 87 LA+P +YL +G LG +G + SY Sbjct: 39 LAEPLIYLFGLGAGLGVMVGRVGGVSY 65
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 60.6 bits (147), Expect = 2e-12 Identities = 60/292 (20%), Positives = 101/292 (34%), Gaps = 53/292 (18%) Query: 1 MKILVTGSQGFVGRNLVSQLR------------------NIQEGKARCYGDLTVSAVYEY 42 MK LVTG+ GF+G ++ +L ++++ + ++ Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQ-FHKI 59 Query: 43 DIDSTSEELEVYCRDCDF--VFNL---AGVNR-PQSQEEFMRGNFGFASTLLDTLKIHHN 96 D+ + E + F VF V ++ + N +L+ + HN Sbjct: 60 DL-ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCR--HN 116 Query: 97 NCP--VMISSSIQATLAGRFGTSE----------YGKSKKAGEELMFEYGKETGAKVLVY 144 + SSS L + S Y +KKA E + Y G Sbjct: 117 KIQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGL 176 Query: 145 RFPNLFGKWCRPNYNSAVVTFCHNIANDLPIMV-NDPMVELELLYIDDLVEEMIAALRGK 203 RF ++G W RP+ A+ F + I V N ++ + YIDD+ E +I Sbjct: 177 RFFTVYGPWGRPDM--ALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVI 234 Query: 204 EHRCEFDGVETVLTEGGRYCAVPI-------THKVKLGEIVRLLEEFKSQPA 248 H D TV T P + V+L + ++ LE+ A Sbjct: 235 PHA---DTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEA 283
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 50.6 bits (121), Expect = 3e-09 Identities = 45/235 (19%), Positives = 89/235 (37%), Gaps = 31/235 (13%) Query: 10 LITGGTGSFGNAVLRRFLDSDIKEVRIFSRDEKKQDDMRHFLQAQRPEVAHK--VKFFIG 67 L+TG G G V +R L++ + V I + ++ D+ L+ R E+ + +F Sbjct: 4 LVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYY--DVS--LKQARLELLAQPGFQFHKI 59 Query: 68 NVRQREAVD--FVMDGVDYVFAAAALKQVPSCEFFPMEAVRTNVEGTNNVLLSAIAHGVS 125 ++ RE + F + VF + V P +N+ G N+L + + Sbjct: 60 DLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQ 119 Query: 126 NVVVLST---------------DKAAYPINAMGISKALMEKVAIAQGRALGKDAKTTICC 170 +++ S+ D +P++ +K E +A G T Sbjct: 120 HLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLP--ATG-- 175 Query: 171 TRYGNVMASRGS---VIPLWVEQMMDGKPITI-TDPEMTRFMMTLDDAVDLVVYA 221 R+ V G + + + M++GK I + +M R +DD + ++ Sbjct: 176 LRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRL 230
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 77.5 bits (191), Expect = 1e-17 Identities = 55/305 (18%), Positives = 107/305 (35%), Gaps = 52/305 (17%) Query: 303 VMVTGAAGSIGSELCRQLCTFGLKQLILFDSAETPMHTIRLELA--DRFPDVVFTPIMGD 360 +VTGAAG IG + ++L G Q++ D+ + + L+ A + F D Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAG-HQVVGIDNL-NDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 361 VRMLARVESVFKTFHPQYVFHAAAYKHVPLMEENPCEAVHTNVQGTRNMADMSVKYGADK 420 + + +F + H + VF + V ENP +N+ G N+ + Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 421 FIMIST---------------DKAVNPTNVMGASKRLAEIYVQSLSIAISKGLHPGKTRF 465 + S+ D +P ++ A+K+ E+ + S H Sbjct: 121 LLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYS-------HLYGLPA 173 Query: 466 ITTRFGNVLGSNGS---VIPRFREQLAKGGPLTV-THPDIIR---YFMTIPEACRLVLEA 518 RF V G G + +F + + +G + V + + R Y I EA + + Sbjct: 174 TGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDV 233 Query: 519 AFMGKGN---------------EIFVFDMGTPVKIADLARRMIELAGLIPEKDIEIKYTG 563 ++ +PV++ D + + + G + + Sbjct: 234 IPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALG----IEAKKNMLP 289 Query: 564 LRPGE 568 L+PG+ Sbjct: 290 LQPGD 294
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 32.9 bits (75), Expect = 0.002 Identities = 63/369 (17%), Positives = 128/369 (34%), Gaps = 34/369 (9%) Query: 3 KQNSKAIYPILFGFFVMGFADVVGIATNYVKVDFSLSDTLANLIPMMVFLWFALFSIPTG 62 + N I+ + FF + V+ ++ + DF+ N + L F++ + G Sbjct: 11 RHNQILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYG 70 Query: 63 VMMGKLGRRNTVVIALAVTALAMLLPLFFYDFACIL-LAFALLGIGNTILQVSLNPMVAN 121 + +LG + ++ + + ++ + F +L +A + G G + +VA Sbjct: 71 KLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVAR 130 Query: 122 VVSPDRITSVLTLGQFIKSISSFLGPIIAGAAASFWGDWKLIFLVYAVTTLISTIWLIST 181 + + L I ++ +GP I G A + W + L+ +T I T+ + Sbjct: 131 YIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIH-WSYLLLIPMIT--IITVPFLMK 187 Query: 182 IPGKEK-----LEEAGAT----FATTLSLFKDKY-----IVSLFLGILFIVG-------- 219 + KE + G LF Y IVS+ ++F+ Sbjct: 188 LLKKEVRIKGHFDIKGIILMSVGIVFFMLFTTSYSISFLIVSVLSFLIFVKHIRKVTDPF 247 Query: 220 IDVGLNTTIPKLLMERTGMPVSEAGLGTSLYFAARTIGSFAGAFLLAKLSGARFLKYSMF 279 +D GL IP ++ G + G A++ +M Sbjct: 248 VDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMM--KDVHQLSTAEIGSVIIFPGTMS 305 Query: 280 VAIAAFVLLLLVPDMWSMFVMIVIVGLACANVFSIIFSYALQHKPERANEISALMIMGVS 339 V I ++ +LV ++V+ + F + E + ++I+ V Sbjct: 306 VIIFGYIGGILVDRRGPLYVLNI------GVTFLSVSFLTASFLLETTSWFMTIIIVFVL 359 Query: 340 GGALITPLM 348 GG T + Sbjct: 360 GGLSFTKTV 368 Score = 30.6 bits (69), Expect = 0.011 Identities = 15/109 (13%), Positives = 44/109 (40%), Gaps = 4/109 (3%) Query: 45 LIPMMVFLWFALFSIPTGVMMGKLGRRNTVVIALAVTALAMLLPLFFYDFACILLAFALL 104 + P + + F G+++ + G + I + +++ L F + + ++ Sbjct: 299 IFPGTMSVII--FGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIV 356 Query: 105 GI--GNTILQVSLNPMVANVVSPDRITSVLTLGQFIKSISSFLGPIIAG 151 + G + + ++ +V++ + + ++L F +S G I G Sbjct: 357 FVLGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVG 405
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 27.0 bits (60), Expect = 0.015 Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 4/85 (4%) Query: 38 EFVEEVADSSGVGSAGVKAVIDRTVVVLVRHMQHGRRVQVGDLGHF--RYNFGSEGVPDE 95 + + +VA+++ + A +D + ++ G +VQ+ G+F R +G + Sbjct: 6 DLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGR-NP 64 Query: 96 KSFATNMIREPKVRFF-PGKALRVA 119 ++ I+ KV F GKAL+ A Sbjct: 65 QTGEEIKIKASKVPAFKAGKALKDA 89
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 87.8 bits (218), Expect = 1e-26 Identities = 28/88 (31%), Positives = 44/88 (50%) Query: 2 NKIELARAIQEACGCTQTEAAGLLNTVIDVFTEQLSNGNSINLQGFGTLKPWHQTLRDGR 61 NK +L + EA T+ ++A ++ V + L+ G + L GFG + + R GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGR 62 Query: 62 NPKTGVPVTIPPRISVKFRPGKFLLDAL 89 NP+TG + I F+ GK L DA+ Sbjct: 63 NPQTGEEIKIKASKVPAFKAGKALKDAV 90
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 28.9 bits (64), Expect = 0.035 Identities = 26/121 (21%), Positives = 39/121 (32%), Gaps = 21/121 (17%) Query: 24 PDGEVLYPVTFSLPEVEVMTRATESEALGNGKTLTITAYNPDTKEMAGSSQYVASSGSLG 83 P + Y V S VE+ E+ LG + + A G++ Sbjct: 290 PVLDGWYGVDVSGSSVELAQSIVEAPELGAAIRVGR-----GARVTVSGGSLSAPHGNV- 343 Query: 84 LATGAGLLYLPAGTYDFCTMVPGTGLSEDGRSITVAANVDALGSVTRAQMLPEPTSVTLN 143 + TG + P SIT+ A A G ++LPEP +TL Sbjct: 344 IETGGARRFAPQAA---------------PLSITLQAGAHAQGKALLYRVLPEPVKLTLT 388 Query: 144 S 144 Sbjct: 389 G 389
>adhesinmafb#Neisseria meningitidis: adhesin MafB signature. Length = 467 Score = 32.3 bits (73), Expect = 0.004 Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 15/66 (22%) Query: 415 HWT----DPSKGWDGKKGGKYVAPG----VYFYVIEATGSDGKPIKRKGSINILRSKQIQ 466 +W P+ +DG KGG Y P Y Y + T R +N ++ I+ Sbjct: 134 NWEGHEHHPADAYDGPKGGNYPKPTGARDEYTYHVNGTA-------RSIKLNPTDTRSIR 186 Query: 467 DEIIEE 472 I + Sbjct: 187 QRISDN 192
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 58.7 bits (142), Expect = 1e-11 Identities = 65/343 (18%), Positives = 125/343 (36%), Gaps = 21/343 (6%) Query: 18 TLVMPIIVLFYEDHGLGLQDVF---ILKSVYSIAAVALEIPSGYLADVWGRRKCLILGCI 74 L+MP++ D IL ++Y++ A G L+D +GRR L++ Sbjct: 22 GLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLA 81 Query: 75 LFFFGYLCYSFTSTFAAFVIAEILLG-TGQTLVNGADSALLYDTTVQYKKENLYLRYEGR 133 Y + I I+ G TG T A + D T ++ R+ G Sbjct: 82 GAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAG--AYIADITDGDERA----RHFGF 135 Query: 134 ITMIGNFAEAIAGIFGGLLAAYSLRYPFYAQALI-AFSGIPAAFALQELNIKSKVQSPVQ 192 ++ F + GGL+ +S PF+A A + + + F L E + + + Sbjct: 136 MSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRRE 195 Query: 193 EIVRIIRYSLVTNKRLCYNIM--FSGIIGAATLTMAWFVQPYLMYMNTPTSWFGVIWTVL 250 + + + + +M F + + A +V + + G+ Sbjct: 196 ALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAF 255 Query: 251 NLTVGIA-ALYSDRVDSYFGPKKMGILILTFVAGGYVALAFNLTYAGLAILFVFYIIRGF 309 + +A A+ + V + G ++ +L + GY+ LAF + V G Sbjct: 256 GILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGI 315 Query: 310 ATPILKGYINQMTFSE-------MRATVLSIRNFIIRLMFAAI 345 P L+ +++ E A + S+ + + L+F AI Sbjct: 316 GMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAI 358 Score = 30.6 bits (69), Expect = 0.012 Identities = 22/81 (27%), Positives = 34/81 (41%) Query: 296 GLAILFVFYIIRGFATPILKGYINQMTFSEMRATVLSIRNFIIRLMFAAIAPFIGWLNDM 355 L+ + + + G P+L G + + S I + LM A AP +G L+D Sbjct: 10 ILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDR 69 Query: 356 YSLRIALLASAAIIMVPGALF 376 + R LL S A V A+ Sbjct: 70 FGRRPVLLVSLAGAAVDYAIM 90
>STREPTOPAIN#Streptopain (C10) cysteine protease family signature. Length = 398 Score = 30.4 bits (68), Expect = 0.016 Identities = 26/124 (20%), Positives = 47/124 (37%), Gaps = 24/124 (19%) Query: 256 YLNYPELQIARYNTKLAENDIFLSK---------------ADYLPSLSVRAANTLARPLS 300 Y NYP + Y L+ N+ + + + LP+ S R +N +S Sbjct: 203 YHNYPNKGLKDYTYTLSSNNPYFNHPKNLFAAISTRQYNWNNILPTYSGRESNVQKMAIS 262 Query: 301 TTMEDV-FSNNWNIALSLSYNLSSLYQN--------KHKIHEVKQIVNIQKNKEEQIRQD 351 M DV S + + S SS Q +H++ + +++ E QI ++ Sbjct: 263 ELMADVGISVDMDYGPSSGSAGSSRVQRALKENFGYNQSVHQINRGDFSKQDWEAQIDKE 322 Query: 352 IRIN 355 + N Sbjct: 323 LSQN 326
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 94.1 bits (234), Expect = 2e-23 Identities = 48/271 (17%), Positives = 91/271 (33%), Gaps = 30/271 (11%) Query: 101 AEAALLDAQASKDILSSGIETSQVNISVQEANIAETEARLRQLEQDHRRYANLLAEESVS 160 + Q K ++ + A I E R + +++LL +++++ Sbjct: 191 IKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIA 250 Query: 161 -------QQQYEQVKAEYEAMKARYESLLRQKSAAQSQ--------YSETSKKSGSVKAA 205 + +Y + E K++ E + + +A+ + +E K Sbjct: 251 KHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDN 310 Query: 206 ILRKEADLEMAQLNLSYTVVTAPFDGYMGRRTLET-GQLVQAGQTLSYLVRNNDK-WITA 263 I +L + +V+ AP + + + T G +V +TL +V +D +TA Sbjct: 311 IGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTA 370 Query: 264 NYKETQISHIYIGQKVRIKVDAVDDRIFH---GTVTAISEATGSKYSLVPTDNSAGNFVK 320 + I I +GQ IKV+A + G V I+ D G Sbjct: 371 LVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDA-------IEDQRLGLVFN 423 Query: 321 IQQRIPVRIDLIDVSPEDMNLLRAGMMVETE 351 + I L +GM V E Sbjct: 424 VIISIEENCLSTGNKNIP---LSSGMAVTAE 451
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 37.2 bits (86), Expect = 1e-04 Identities = 45/285 (15%), Positives = 112/285 (39%), Gaps = 20/285 (7%) Query: 18 WLGIVTAFTVMLPIILINGAYTGTITEVSGTLGVLSEDISMAYYATSAGMAVAYPLIPKV 77 WL I++ F+V+ ++L ++ +++ + A ++ + K+ Sbjct: 18 WLCILSFFSVLNEMVL-----NVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKL 72 Query: 78 RPVVTTKTILLIDLLLQVILSFICAQVNQMDIIIVCSFFIGFLKGFAMLEIILMIRPLFS 137 + K +LL +++ S I + +++ + FI A +++++ + Sbjct: 73 SDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYI 132 Query: 138 PQNVRSEFYAYFYPIVFSAGQVSMAVTAQLAYYYQWQYMYYFVILLLLVAISFILMFFRY 197 P+ R + + IV V A+ +A+Y W Y+ ++ ++ + + + Sbjct: 133 PKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKE 192 Query: 198 ARRPVYFPFKEIDWKSILLMASILLFTIWSATYGKTLDWFSSAKITVYVLSLPVLVWLFQ 257 R +F K I IL+ I+ F +++ +Y + + V VLS +F Sbjct: 193 VRIKGHFDIKGI----ILMSVGIVFFMLFTTSYSISF-------LIVSVLSF----LIFV 237 Query: 258 FRQKTRKNPYLKLEVLNSSKALIGYFFMMLVMFFSSTSSLVTSYM 302 + +P++ + + +IG ++ + + YM Sbjct: 238 KHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYM 282
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 30.3 bits (68), Expect = 0.003 Identities = 5/35 (14%), Positives = 14/35 (40%) Query: 158 VVIDKDGKITYVQYVKDISQEPDYKAAIAAVKQAK 192 + DG++ VQ + + A+++ + Sbjct: 184 FDVTPDGRVDNVQILSAKPANMFEREVKNAMRRWR 218
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 30.5 bits (69), Expect = 0.014 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 2/65 (3%) Query: 42 EWERLRELACDIKLYSNSHLDTLLEEFEKNAIANGAIVHWAKDAAEHNEIVEKILQQHNA 101 E E L ++ ++ D +L EF++ +A I D A E++EK L A Sbjct: 44 EIESLTFEIAKLETITSELKDNVLLEFKELMMAQEFIQKGGIDYAR--ELLEKSLGTQKA 101 Query: 102 HTLIK 106 +I Sbjct: 102 VDIIN 106
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 32.2 bits (73), Expect = 4e-04 Identities = 29/125 (23%), Positives = 48/125 (38%), Gaps = 10/125 (8%) Query: 10 PAYKDIAINYFQSKWPSVYPVLYEDSINHSIDSPNPLPQWYLLEKDNEIIGCAGLITNDF 69 PA+++ Y + ++ Y YED +L +N IG + +N Sbjct: 28 PAFENGVWTYTEERFSKPYFKQYEDDDMDVSYVEEEGKAAFLYYLENNCIGRIKIRSN-- 85 Query: 70 ISRMDLYPWVCAVYIDENHRGHFYSTLLLEKAKEDTIKAGFSRLYLSTEHIG-----FYE 124 + Y + + + +++R T LL KA E + F L L T+ I FY Sbjct: 86 ---WNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYA 142 Query: 125 KLGFR 129 K F Sbjct: 143 KHHFI 147
>ECOLIPORIN#E.coli/Salmonella-type porin signature. Length = 383 Score = 28.0 bits (62), Expect = 0.034 Identities = 23/86 (26%), Positives = 32/86 (37%), Gaps = 8/86 (9%) Query: 51 GPSVQPSIALSYAGLSLTAWGSTDFSSMSDPNKGKEFDLTVGYGI----GGFSIGVTDYW 106 G L++AGL +GS D+ N G +D+ + GG S D + Sbjct: 88 GEGANSWTRLAFAGLKFGDYGSFDYGR----NYGVLYDVEGWTDMLPEFGGDSYTYADNY 143 Query: 107 WAGEGKRYGNYSNSHFFEGTVGYNFG 132 G Y N+ FF G NF Sbjct: 144 MTGRANGVATYRNTDFFGLVDGLNFA 169
>FLGFLGJ#Flagellar protein FlgJ signature. Length = 313 Score = 62.0 bits (150), Expect = 3e-14 Identities = 39/145 (26%), Positives = 69/145 (47%), Gaps = 24/145 (16%) Query: 4 QEFIKQYLFPAQKAGECFGINPIVILAQSAIETGWGESTLAKEH----NNFFGITAYGHP 59 + F+ Q PAQ A + G+ +ILAQ+A+E+GWG+ + +E+ N FG+ A G+ Sbjct: 150 KAFLAQLSLPAQLASQQSGVPHHLILAQAALESGWGQRQIRRENGEPSYNLFGVKASGN- 208 Query: 60 NTFWKGTKTDLSENSGHTSL------WFRTYESAEDSFMDFARLI-----HTAYPVAAS- 107 WKG T+++ FR Y S ++ D+ L+ + A AAS Sbjct: 209 ---WKGPVTEITTTEYENGEAKKVKAKFRVYSSYLEALSDYVGLLTRNPRYAAVTTAASA 265 Query: 108 ----LSAHPSAYAKEIAYSKYISEV 128 + + YA + Y++ ++ + Sbjct: 266 EQGAQALQDAGYATDPHYARKLTNM 290
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 152 bits (386), Expect = 2e-50 Identities = 56/139 (40%), Positives = 82/139 (58%) Query: 17 VVEALQQLLADYQVFYTNLRGFHWNIKGHGFFVLHSKFEEMYDDAAEKVDELAERILMLG 76 V +L L+++ + Y+ L FHW +KG FF LH KFEE+YD AAE VD +AER+L +G Sbjct: 13 VENSLNTQLSNWFLLYSKLHRFHWYVKGPHFFTLHEKFEELYDHAAETVDTIAERLLAIG 72 Query: 77 GVPVNKFSEYLKVARVKEVSGVSCGDEALENILNTYGQFIAEERKLLSLASEAGDEATVA 136 G PV EY + A + + + E ++ ++N Y Q +E + ++ LA E D AT Sbjct: 73 GQPVATVKEYTEHASITDGGNETSASEMVQALVNDYKQISSESKFVIGLAEENQDNATAD 132 Query: 137 LMSDYLKEQEKLVWMLVAY 155 L ++E EK VWML +Y Sbjct: 133 LFVGLIEEVEKQVWMLSSY 151
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 31.7 bits (72), Expect = 0.005 Identities = 8/25 (32%), Positives = 14/25 (56%) Query: 72 GYQPYVGIPELRKGFADWYQTWYGV 96 G+ P + + K F +WY+ +Y V Sbjct: 310 GFTPETTVKDGVKNFVNWYRDFYKV 334
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 54.5 bits (131), Expect = 1e-10 Identities = 25/116 (21%), Positives = 59/116 (50%), Gaps = 9/116 (7%) Query: 3 VLIVEDETAAYENLVDILMEVAPDIQIAGNTESVTQTVHWLQSNPAPELIFMDIHLSDGS 62 +L+ +D+ A L L D++I N ++ + W+ + +L+ D+ + D + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWR---WIAAGD-GDLVVTDVVMPDEN 61 Query: 63 AFNIFDKIE---LETPIVFTTAYDRY--AIEAFKVNSIDYLLKPIKVEDIRHALDK 113 AF++ +I+ + P++ +A + + AI+A + + DYL KP + ++ + + Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117
>PF06580#Sensor histidine kinase Length = 349 Score = 141 bits (357), Expect = 3e-41 Identities = 64/303 (21%), Positives = 130/303 (42%), Gaps = 21/303 (6%) Query: 43 VTGLLSFFVYRFLFFWGLISLLIRYNLKKMPATLFKQRLMRNFLFSFIAYLLYASISYGV 102 SF + + +++R +PA + + F+ + + L A I+ Sbjct: 56 THAYRSFIKRQGWLKLNMGQIILRV----LPACVVIGMVW--FVANTSIWRLLAFINTKP 109 Query: 103 SSLGIHTDALGSILIFQFFVTCFLCTFIGYISMLYSRQREKESEIERLRFENL--QSRCD 160 + + L +IF V + Y + + K++EI++ + ++ +++ Sbjct: 110 VAFTL---PLALSIIF-NVVVVTFMWSLLYFGWHFFKN-YKQAEIDQWKMASMAQEAQLM 164 Query: 161 ALANQINPHFFFNSLNGISSLIRKKDDEKTLMYVHQLSDIFRYILQSDRKGLVSLREELE 220 AL QINPHF FN+LN I +LI + D K + LS++ RY L+ VSL +EL Sbjct: 165 ALKAQINPHFMFNALNNIRALILE-DPTKAREMLTSLSELMRYSLRYSNARQVSLADELT 223 Query: 221 FMLSFQYVMEVRFANKLTFSVRVEEERKDLLMLPVLSLLPLVDNVVVHNRIDSEHKMEIS 280 + S+ + ++F ++L F ++ D+ +P + + LV+N + H +I Sbjct: 224 VVDSYLQLASIQFEDRLQFENQINPAIMDVQ-VPPMLVQTLVENGIKHGIAQLPQGGKIL 282 Query: 281 IVLNEQDELVV----SNPVYPKLSAPDTNGTGLANLESRFTLLMNKQ--IRIESTEETFR 334 + + + V + + ++ GTGL N+ R +L + I++ + Sbjct: 283 LKGTKDNGTVTLEVENTGSLALKNTKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVN 342 Query: 335 VCL 337 + Sbjct: 343 AMV 345
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 52.3 bits (125), Expect = 9e-10 Identities = 14/84 (16%), Positives = 31/84 (36%), Gaps = 9/84 (10%) Query: 364 IRKHLQYPSSYIGSNKNVRVTCTFTINTYGELEDIEVVRGSNIPVFDEEALRVLRLMPRW 423 R QYP+ +V F + G +++++++ +F+ E +R R+ Sbjct: 161 SRNQPQYPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAKPANMFEREVKNAMR-RWRY 219 Query: 424 KPAVGYYQQPRFMKCRYTVPVIFT 447 +P V ++F Sbjct: 220 EPGK---PGSGI-----VVNILFK 235 Score = 30.7 bits (69), Expect = 0.009 Identities = 14/65 (21%), Positives = 22/65 (33%), Gaps = 2/65 (3%) Query: 248 YPVDMLKANRGGYAVCQFTIDTMGMAKDVFTLESSEPAC-EKEVKRLINTMSHWLPAYDK 306 YP G +F + G +V L + E+EVK + + P Sbjct: 167 YPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAKPANMFEREVKNAMR-RWRYEPGKPG 225 Query: 307 AGKRV 311 +G V Sbjct: 226 SGIVV 230
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 67.3 bits (164), Expect = 7e-15 Identities = 14/65 (21%), Positives = 29/65 (44%), Gaps = 6/65 (9%) Query: 398 KEGRVVVSFVVERNGSLSDIQVIRSSSYKELDDEAIRIVRKMPKWIPGQQRGKPVKVKYT 457 EG+V V F V +G + ++Q++ + + E +R+ ++ PG+ Sbjct: 176 IEGQVKVKFDVTPDGRVDNVQILSAKPANMFEREVKNAMRR-WRYEPGKPGS-----GIV 229 Query: 458 VPVDF 462 V + F Sbjct: 230 VNILF 234
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 63.8 bits (155), Expect = 1e-13 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 6/73 (8%) Query: 393 EEVRATGKEDRITLSFVVERDGSLSNIEILRSKGDKQLEDEAIRIIRKMPKWNPGKQHGK 452 +A E ++ + F V DG + N++IL +K E E +R+ ++ PGK Sbjct: 169 ARAQALRIEGQVKVKFDVTPDGRVDNVQILSAKPANMFEREVKNAMRR-WRYEPGKPGSG 227 Query: 453 IVRTKYTIPVTFR 465 I + + F+ Sbjct: 228 I-----VVNILFK 235
>ECOLIPORIN#E.coli/Salmonella-type porin signature. Length = 383 Score = 30.3 bits (68), Expect = 0.034 Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 5/96 (5%) Query: 85 ANDL-TATNYGRTREAVQWTPIEADSTGKFANRALRRAYVFTEYKAD---KPQIALLESS 140 AN++ AT Y TR + + G AN+ + V +Y+ D +P ++ L S Sbjct: 256 ANNIYLATMYSETRNMTPYGKTDKGYDGGVANKT-QNFEVTAQYQFDFGLRPAVSFLMSK 314 Query: 141 GNTRTFINGMPHEGDHYDFAYTLIPFRMQKGMNEFI 176 G T+ N + D +A + K + ++ Sbjct: 315 GKDLTYNNVNGDDKDLVKYADVGATYYFNKNFSTYV 350
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 30.3 bits (68), Expect = 0.021 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%) Query: 597 EEAAKEAPKEEKKEKKPRKPRAKKEEAPKE--KAVPQQPAKPV 637 +EA K + K K KP K +E PK K V +PA P Sbjct: 83 KEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPF 125
>PF05272#Virulence-associated E family protein Length = 892 Score = 113 bits (284), Expect = 5e-28 Identities = 49/233 (21%), Positives = 87/233 (37%), Gaps = 25/233 (10%) Query: 385 SYNPLEMFLYNLPAWDGRDRIRALADTVPTKDGEWRNRFYI---------WFISMVAHWQ 435 +P ++ WD R+ V K + + + VA Sbjct: 531 RVHPFRDWVKAQQ-WDEVPRLEKWLVHVLGKTPDDYKPRRLRYLQLVGKYILMGHVA--- 586 Query: 436 KTDRLYAN----NLVPVLVGGQGISKSTFFRLLLPPVLRDYHAES-INLENKNEAELLMA 490 R+ + VL G GI KST L+ D+ +++ ++ ++ +A Sbjct: 587 ---RVMEPGCKFDYSVVLEGTGGIGKSTLINTLVGL---DFFSDTHFDIGTGKDSYEQIA 640 Query: 491 QNVLITIDEFDRLSKKYQADLKYLIQKPEVKVRRPHQKTFQQMRRLASFAATANPMELLT 550 V + E + +K + + R + + Q R T N + L Sbjct: 641 GIVAYELSEMTAFRRADAEAVKAFFSSRKDRYRGAYGRYVQDHPRQVVIWCTTNKRQYLF 700 Query: 551 DPTGSRRYVCVQVTGIIDVS-VPIEYEQLYAQALHAIRSGERYWLNSEEERAL 602 D TG+RR+ V V G ++ + QL+A+ALH +GERY+ + E+E Sbjct: 701 DITGNRRFWPVLVPGRANLVWLQKFRGQLFAEALHLYLAGERYFPSPEDEEIY 753
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 45.1 bits (107), Expect = 7e-09 Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 2/81 (2%) Query: 39 LCERIADRSSFNEGEVKGMMSLFKEELVRSLKDGDPVEIEGIGLFYPTAKCPPI-RNPKE 97 L ++A+ + + + + + L G+ V++ G G F + RNP+ Sbjct: 7 LIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGRNPQT 66 Query: 98 IRAESIHFSKV-AFRACKELK 117 I SKV AF+A K LK Sbjct: 67 GEEIKIKASKVPAFKAGKALK 87
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 65.2 bits (159), Expect = 3e-14 Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 8/123 (6%) Query: 10 IVDDEPSCIKCLESDLSRFPEIRVVATCTSPDNAAREIVRLQPDLLFIDVEMPGMTGLEL 69 + DD+ + L LSR V ++ R I DL+ DV MP +L Sbjct: 8 VADDDAAIRTVLNQALSRAGYD--VRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 70 LSRIQSDIHPDMHIVFYTAYDKYLL--DAIHASAFDYLLKPYKSKELDDLINRLRAHIAK 127 L RI+ PD+ ++ +A + ++ A A+DYL KP+ +L +LI + +A+ Sbjct: 66 LPRIKK-ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPF---DLTELIGIIGRALAE 121 Query: 128 DEK 130 ++ Sbjct: 122 PKR 124
>PF06580#Sensor histidine kinase Length = 349 Score = 110 bits (277), Expect = 1e-28 Identities = 55/250 (22%), Positives = 104/250 (41%), Gaps = 22/250 (8%) Query: 434 WLAWIAGLGLIIVVLLMVCALFYIRRKKELRYKQQIATITQL-------RMAVVRNRIAP 486 L + +VV+ + +L Y YKQ ++ ++ ++ +I P Sbjct: 113 TLPLALSIIFNVVVVTFMWSLLYFGWHFFKNYKQAEIDQWKMASMAQEAQLMALKAQINP 172 Query: 487 HYIFNVLNSV-MPIFRRYEELSEPVNLLIDVLRGDLLSSEQLAVPLEKEIGFVKNYLKLK 545 H++FN LN++ I + E + L +++R L S V L E+ V +YL+L Sbjct: 173 HFMFNALNNIRALILEDPTKAREMLTSLSELMRYSLRYSNARQVSLADELTVVDSYLQLA 232 Query: 546 MLGDPECIRVEWNISSGVFMETLVPSMSIQIPVENAVKYAFNAESLNPCIIISVFVKDEE 605 + + ++ E I+ + M+ VP M +Q VEN +K+ I++ + Sbjct: 233 SIQFEDRLQFENQINPAI-MDVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGT 291 Query: 606 LHVSIEDNGIGYHPSAHVRDERSTGQGLKILYRTTDLLNTHNIRKMQFSIRDLYSASEKQ 665 + + +E+ G A + STG GL+ N +M + SEKQ Sbjct: 292 VTLEVENTG----SLALKNTKESTGTGLQ---------NVRERLQMLYGTEAQIKLSEKQ 338 Query: 666 HGTSVSLIVP 675 + +++P Sbjct: 339 GKVNAMVLIP 348
>PF01540#Adhesin lipoprotein Length = 475 Score = 32.8 bits (74), Expect = 0.005 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 4/67 (5%) Query: 641 WFLGYFPRHSEMGDAFDKQIAEVENAELDSK--EKTETIAE-LERLKNMEHQKNSYIGTI 697 W E+ A+ K++AE+ AE D K E+ + I E + L + + S+ TI Sbjct: 208 WLEKIVSEWEEVKKAWSKELAEI-KAEDDKKLAEENQKIKEGAKELLKLSEKIQSFADTI 266 Query: 698 GQTIQPV 704 TI + Sbjct: 267 ALTITKL 273
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 29.6 bits (66), Expect = 0.011 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%) Query: 128 VWLGANVTLLSGVTIGRGAVIGA-SSVITKDVPPYAVVVG 166 + GANVT+ + G IGA S+ +D+PP VV+ Sbjct: 165 IERGANVTVQRSAIVDGGLHIGALQSLQPEDLPPSRVVLR 204
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 158 bits (402), Expect = 1e-43 Identities = 93/435 (21%), Positives = 174/435 (40%), Gaps = 80/435 (18%) Query: 3 NIRNFCIIAHIDHGKSTLADRLLEYTKTVE--GK-DLQAQVLDDMDLERERGITIKSHAI 59 I N ++AH+D GK+TL + LL + + G D D+ LER+RGITI++ Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 60 QMKYNYKGEEYILNLIDTPGHVDFSYEVSRSIAACEGALLIIDAAQGIQAQT-------- 111 ++ +N+IDTPGH+DF EV RS++ +GA+L+I A G+QAQT Sbjct: 62 SFQWE----NTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALR 117 Query: 112 -------------------ISNLYMAIENDL--EIIPVMNKIDLPSAMP----------- 139 +S +Y I+ L EI+ P+ Sbjct: 118 KMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDT 177 Query: 140 -DEVEDQIVE--LLGCP--REDIIRA----------------SGKTGEGVFQILDAIIEK 178 E D ++E + G ++ + S K G+ +++ I K Sbjct: 178 VIEGNDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNK 237 Query: 179 VPAPQGDPEAPLQCLIFDSVFNSFRGIIAYFKVVNGVIRKGDHVKFIATGKEYDADEVGV 238 + ++ L +F ++ R +AY ++ +GV+ D V+ K + Sbjct: 238 FYSSTHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKIKITEMYTS 297 Query: 239 LKLEMSPRSEIRTGDVGYIISGIKTSKEVKVGDTITHVARSAKAGIAGFEEVKPMVFAGV 298 + E+ + +G++ I ++ +K+ + + E P++ V Sbjct: 298 INGELCKIDKAYSGEI-----VILQNEFLKLNSVLGDTKLLPQRER--IENPLPLLQTTV 350 Query: 299 YPIDSEDFENLRASLEKLQLNDASLTF-QPESSAALGFGFRCGFLGLLHMEIVQERLDRE 357 P + E L +L ++ +D L + ++ + FLG + ME+ L + Sbjct: 351 EPSKPQQREMLLDALLEISDSDPLLRYYVDSATHEIIL----SFLGKVQMEVTCALLQEK 406 Query: 358 FNMDVITTVPNVSYK 372 +++++ P V Y Sbjct: 407 YHVEIEIKEPTVIYM 421
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 31.1 bits (70), Expect = 0.008 Identities = 9/64 (14%), Positives = 21/64 (32%) Query: 544 LNPQSKWVIRRIAGCYRSLKEPEEALKYYRRYEKLNPDNLSITISIGHCYLELKNYSEAL 603 L+ + C +++ + + A+ Y ++ C L+ +EA Sbjct: 65 LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAE 124 Query: 604 KCFF 607 F Sbjct: 125 SGLF 128 Score = 30.3 bits (68), Expect = 0.015 Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 1/79 (1%) Query: 490 YYLRKNYFSDALTIFNQLAETNQESDILFQKIGYCKQMNDDLQGALDAYLRADLLNPQSK 549 Y Y DA +F L + F +G C+Q A+ +Y +++ + Sbjct: 46 QYQSGKY-EDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIKEP 104 Query: 550 WVIRRIAGCYRSLKEPEEA 568 A C E EA Sbjct: 105 RFPFHAAECLLQKGELAEA 123 Score = 30.3 bits (68), Expect = 0.017 Identities = 10/57 (17%), Positives = 21/57 (36%) Query: 559 YRSLKEPEEALKYYRRYEKLNPDNLSITISIGHCYLELKNYSEALKCFFKVDYMDSN 615 + E+A K ++ L+ + + +G C + Y A+ + MD Sbjct: 46 QYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIK 102
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 28.4 bits (63), Expect = 0.043 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 8/54 (14%) Query: 40 AQAIKRGDRRALEKLTRANLRFVVSVAKQYQNQGLSLPDLINEGNLGLIKAAEK 93 Q+ K ++A E+ A R ++ + K Y+ QG SL D L++ A++ Sbjct: 28 GQSTKDALKKAAEQTRNAGNRLILLIPKDYKGQGSSLND--------LVRTADE 73
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 70.0 bits (171), Expect = 3e-15 Identities = 32/173 (18%), Positives = 58/173 (33%), Gaps = 31/173 (17%) Query: 114 FQRPQPQPRVGSGSGVIISTDGYIITNNHVIDGADELEVTL------------NDNRKFS 161 Q P SGV++ D ++TN HV+D L + + Sbjct: 93 IQVEAPTGT-FIASGVVVGKD-TLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTA 150 Query: 162 AKLIGTDPTTDIALIKVDA--------KDLPTIPFGDSEKLKVGEWVLAVGNPFNLTSTV 213 ++ D+A++K + + ++ + +V + + G P + Sbjct: 151 EQITKYSGEGDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYPGDKPVAT 210 Query: 214 TAGIVSAKGRGISMGGDRSKIESFIQTDAAVNPGNSGGALVNTKGELIGINTA 266 S G +Q D + GNSG + N K E+IGI+ Sbjct: 211 ---------MWESKGKITYLKGEAMQYDLSTTGGNSGSPVFNEKNEVIGIHWG 254
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 31.6 bits (72), Expect = 3e-04 Identities = 12/45 (26%), Positives = 26/45 (57%) Query: 37 LCEEIAMVSGVNKGMVRATLYGLVSSMKTFIQQGHTVQVEGFGSF 81 L ++A + + K A + + S++ +++ +G VQ+ GFG+F Sbjct: 7 LIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNF 51
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 46.9 bits (111), Expect = 2e-08 Identities = 37/260 (14%), Positives = 70/260 (26%), Gaps = 45/260 (17%) Query: 14 SVAFHLAIFLILLFTVLRTEIPEEDGGVLVNFGNVNSAAGTFEPKYTGQELPQETTTPPP 73 SV H A+ LL+T + I ++ V A P P P Sbjct: 16 SVCIHGAVVAGLLYTSVHQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEP 75 Query: 74 PPTPPVETPKEEVITQDIEESVAMADAKKKEEQKKKEEERKRKEEEERRKREEAKKKRLE 133 P P V +K + K K + + K+ +E+ KR+ Sbjct: 76 EPIPEPPKEAPVV--------------IEKPKPKPKPKPKPVKKVQEQPKRDVKP----- 116 Query: 134 EERRKKEQAISNRVAGAFGIGGAEGNSQGDAETGTGNQGSPFGNSDHGANEGVGGYGSFN 193 + + + + + G + + Sbjct: 117 -------------------VESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRALS 157 Query: 194 LNGRSIGAGGLPRPAYTIQEEGKIVINITVDPKGNVIFAEIGRGTNIDNASMRKSALDAA 253 N P A ++ EG++ + V P G V +I + +A Sbjct: 158 RNQPQ-----YPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAKP--ANMFEREVKNAM 210 Query: 254 KRAKFNSISGANNQSGTITY 273 +R ++ + I + Sbjct: 211 RRWRYEPGKPGSGIVVNILF 230
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 29.1 bits (65), Expect = 0.010 Identities = 22/93 (23%), Positives = 31/93 (33%), Gaps = 16/93 (17%) Query: 62 VDMDYKSSGVASAYWEIARELSFWQPPFSIHVEYNGGLMKGASYNNAYLGGATYTYNSKD 121 V DY+ GV +A A E ++ + GLM N A + Y Sbjct: 97 VAKDYRKKGVGTALLHKAIE-------WAKENHF-CGLMLETQDINI---SACHFYAKHH 145 Query: 122 FSRGITFTAMYKYIQKHKTPNNFQLTTTWYLHF 154 F G T +Y P ++ WY F Sbjct: 146 FIIGAVDTMLYS-----NFPTANEIAIFWYYKF 173
>THERMOLYSIN#Thermolysin metalloprotease (M4) family signature. Length = 544 Score = 31.9 bits (72), Expect = 0.008 Identities = 31/118 (26%), Positives = 40/118 (33%), Gaps = 31/118 (26%) Query: 509 GAIGVVIGHEMTHGFDDQGRN---YDKNGNL-------------------ADWWTPEDAA 546 G I VV GHE+TH D +++G + DW ED Sbjct: 363 GGIDVV-GHELTHAVTDYTAGLVYQNESGAINEAMSDIFGTLVEFYANRNPDWEIGEDIY 421 Query: 547 LFTERADRLVQQYDNIIVADSVHANGRYTLGENIADQGGLQVS-----HLAYLNSLKG 599 D L D D H + RYT + D GG+ + AYL S G Sbjct: 422 TPGVAGDALRSMSDPAKYGDPDHYSKRYTGTQ---DNGGVHTNSGIINKAAYLLSQGG 476
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 62.0 bits (150), Expect = 4e-14 Identities = 28/155 (18%), Positives = 61/155 (39%), Gaps = 14/155 (9%) Query: 2 TKEQVMTTALDMFSQYGIKSVSMDDIARNTGISKRTIYEFFEDKETLLQEAIKYHNNTMR 61 T++ ++ AL +FSQ G+ S S+ +IA+ G+++ IY F+DK L E + + + Sbjct: 12 TRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIG 71 Query: 62 KILSELEKGPF-----TALDVFVLFYEEFMKHPRWYIKRYYDDLKRYPKAVEQAEKDKA- 115 ++ E + ++ + E + R + + + + V + + Sbjct: 72 ELELEYQAKFPGDPLSVLREILIHVLESTVTEERR--RLLMEIIFHKCEFVGEMAVVQQA 129 Query: 116 ------DFTTRCIKLLNRGGKEGVFQKDLNIEILA 144 + R + L + + DL A Sbjct: 130 QRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAA 164
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 39.8 bits (93), Expect = 1e-05 Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 4/54 (7%) Query: 67 IAPQSPVRIAKLFAEVGDHVKEGQVLVKMDET----NLQQAKIQLDNQEIEFNR 116 I P + ++ + G+ V++G VL+K+ + + + L +E R Sbjct: 99 IKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTR 152 Score = 35.2 bits (81), Expect = 3e-04 Identities = 30/178 (16%), Positives = 64/178 (35%), Gaps = 18/178 (10%) Query: 99 NLQQAKIQLDNQEIEFNRIDELYKVGGASKSAWDAQK--TQLDVSRASYKNLQENTQLLS 156 L+Q + ++ + + E+ + +L+K K L + A + Q+ + + + Sbjct: 274 QLEQIESEILSAKEEYQLVTQLFKNEILDKLR-QTTDNIGLLTLELAKNEERQQASVIRA 332 Query: 157 PISGII-TARNYDSGDMYSGGEPI-YTVEQIRPVKLFVNVSESYFTDVKKGNEVDIKLDV 214 P+S + + + G + + E + V + +++ V + G IK++ Sbjct: 333 PVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEA 392 Query: 215 YGDE---VFKGKVSLVYPTIDASTRT---FPVEIKIV-------NTDERVRPGMFARA 259 + GKV + R F V I I N + + GM A Sbjct: 393 FPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVIISIEENCLSTGNKNIPLSSGMAVTA 450
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 693 bits (1791), Expect = 0.0 Identities = 239/1034 (23%), Positives = 477/1034 (46%), Gaps = 36/1034 (3%) Query: 7 AVKKPVTTALVFVAVVIMGLFSLTRLSVDLFPEIETNMIMVMTAYPGASASDIEMNVSKP 66 +++P+ ++ + +++ G ++ +L V +P I + V YPGA A ++ V++ Sbjct: 5 FIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVTQV 64 Query: 67 LENVLNSVSDLKHITSQSRENISI-VTLEFEYGTDIDVATNDVRDKLDVVESSLPDDVEN 125 +E +N + +L +++S S S+ +TL F+ GTD D+A V++KL + LP +V+ Sbjct: 65 IEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEVQQ 124 Query: 126 PIIFKFGTDDIPIL---LLSVTAEESTNALYKILDDKVSNPLARISGVGAVSISGAPVRE 182 I + ++ +S + + + + V + L+R++GVG V + GA Sbjct: 125 QGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGAQ-YA 183 Query: 183 VQVYCDPYKLEAYGLTIEGISNIIAQENRNTPGGSIDIGSN------TYTLRVQGEFTDA 236 ++++ D L Y LT + N + +N G + ++ Q F + Sbjct: 184 MRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFKNP 243 Query: 237 RQMLDLVV-GSSNGRNVYLRDVADVKDYVEERAQETFNNGGRGGMIVIQKQSGANSVNIA 295 + + + +S+G V L+DVA V+ E NG + I+ +GAN+++ A Sbjct: 244 EEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTA 303 Query: 296 KKVHDKLPEIQASLPSDVKLGVIVDTSTNILNTIDSLKETIMITFIVVMFVVFIFLGRWR 355 K + KL E+Q P +K+ DT+ + +I + +T+ ++V V+++FL R Sbjct: 304 KAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMR 363 Query: 356 ATFIIILTIPISLIAAFAYLLASGNTLNIISLSSLSIAIGMVVDDAIVVLENVTTHI-ER 414 AT I + +P+ L+ FA L A G ++N +++ + +AIG++VDDAIVV+ENV + E Sbjct: 364 ATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMMED 423 Query: 415 GSKPKQAAVHATNEVAISVIASTLTMLAVFLPLTMVTGMAGILFKQLGWIVSIIMIVSTV 474 PK+A + +++ +++ + + AVF+P+ G G +++Q + M +S + Sbjct: 424 KLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVL 483 Query: 475 GALTLTPMLCSQLLRLDPKK-GRLYVLFFTPIEKALNALDVAYARFLSWAVRHRKTVIFG 533 AL LTP LC+ LL+ + FF + Y + + + Sbjct: 484 VALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYLLI 543 Query: 534 AMLIFVGSMMLVPTVKTEFFPTQDNGRVGITIELPIGTRQEITRDLALRVDKQFREKYPE 593 LI G ++L + + F P +D G I+LP G QE T +V Q + Y + Sbjct: 544 YALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERT----QKVLDQVTDYYLK 599 Query: 594 IDVLNFSEGQADTDNTFAQLSDNGSHIIEMNVGLSSVGDRERGLIEICDLMRKDLAQYSE 653 + N T N F+ S + V L +R ++ + + + Sbjct: 600 NEKAN--VESVFTVNGFS-FSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGK 656 Query: 654 IKEYKVLA--------GGSSGGAGGETTVDVEIYGFDFEKTDIVAAELARRLETLKG-CS 704 I++ V+ G++ G E ++ G + +L Sbjct: 657 IRDGFVIPFNMPAIVELGTATGFDFEL---IDQAGLGHDALTQARNQLLGMAAQHPASLV 713 Query: 705 QVNISRKDYIPEYQVDFDREKLAMNGLNVTTASTYLRNRINGSTASKYREDGDEYDIKVR 764 V + + +++++ D+EK G++++ + + + G+ + + + G + V+ Sbjct: 714 SVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQ 773 Query: 765 YAPEFRQSVEDIENIIIYNSAGQGVRIRDVGKVVERMTPPTIERKNRERIITVSAVVAQG 824 +FR ED++ + + ++ G+ V P +ER N + + A G Sbjct: 774 ADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPG 833 Query: 825 AALSDLVEQTRAELKKMDIPSEISWQLGGTFEDQQDTFADLGILMVLIIILVFIVMAAQF 884 + D + K+ P+ I + G ++ + L+ + ++VF+ +AA + Sbjct: 834 TSSGDAMALMENLASKL--PAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALY 891 Query: 885 ESLTDPFVIMFSIPFAFTGVVLGLSITQTPLGVMALIGVIMLMGIVVKNGIVLIDYTI-L 943 ES + P +M +P GV+L ++ V ++G++ +G+ KN I+++++ L Sbjct: 892 ESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDL 951 Query: 944 CRERGMSILTAAVTAGKSRLRPVLMTTLTTVLGMIPMAVGTGEGSEMWRSMGMTVAWGLA 1003 + G ++ A + A + RLRP+LMT+L +LG++P+A+ G GS ++G+ V G+ Sbjct: 952 MEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMV 1011 Query: 1004 VSTLITLVIVPVVY 1017 +TL+ + VPV + Sbjct: 1012 SATLLAIFFVPVFF 1025 Score = 111 bits (279), Expect = 6e-27 Identities = 68/367 (18%), Positives = 135/367 (36%), Gaps = 23/367 (6%) Query: 684 EKTDIVAAELARRLETLKGCSQVNISRKDYIPEYQVDFDREKLAMNGLNVTTASTYLR-- 741 + +D VA+ + L L G V + Y ++ D + L L L+ Sbjct: 153 DISDYVASNVKDTLSRLNGVGDVQLFGAQY--AMRIWLDADLLNKYKLTPVDVINQLKVQ 210 Query: 742 --NRINGSTASKYREDGDEYDIKVRYAPEFRQSVEDIENIII-YNSAGQGVRIRDVGKVV 798 G G + + + F ++ E+ + + NS G VR++DV +V Sbjct: 211 NDQIAAGQLGGTPALPGQQLNASIIAQTRF-KNPEEFGKVTLRVNSDGSVVRLKDVARVE 269 Query: 799 ERM-TPPTIERKNRERIITVSAVVAQGA---ALSDLVEQTRAELKKMDIPSEISWQLGGT 854 I R N + + +A GA + ++ AEL+ P + Sbjct: 270 LGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQP-FFPQGMKVL---Y 325 Query: 855 FEDQQDTFADLGILMVLI-----IILVFIVMAAQFESLTDPFVIMFSIPFAFTGVVLGLS 909 D F L I V+ I+LVF+VM +++ + ++P G L+ Sbjct: 326 PYDTT-PFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILA 384 Query: 910 ITQTPLGVMALIGVIMLMGIVVKNGIVLID-YTILCRERGMSILTAAVTAGKSRLRPVLM 968 + + + G+++ +G++V + IV+++ + E + A + ++ Sbjct: 385 AFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVG 444 Query: 969 TTLTTVLGMIPMAVGTGEGSEMWRSMGMTVAWGLAVSTLITLVIVPVVYCTFAGNGVKRR 1028 + IPMA G ++R +T+ +A+S L+ L++ P + T Sbjct: 445 IAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEH 504 Query: 1029 RRKIAKL 1035 Sbjct: 505 HENKGGF 511 Score = 95.3 bits (237), Expect = 6e-22 Identities = 74/502 (14%), Positives = 163/502 (32%), Gaps = 27/502 (5%) Query: 3 LYATAVKKPVTTALVFVAVVIMGLFSLTRLSVDLFPEIETNMIMV-MTAYPGASASDIEM 61 + L++ +V + RL PE + + + + GA+ + Sbjct: 529 SVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQK 588 Query: 62 NVSKPLENVLNSVSDLKHITSQSRE----------NISIVTLE-----FEYGTDIDVATN 106 + + + L + ++ V+L+ + + Sbjct: 589 VLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIH 648 Query: 107 DVRDKLDVVESSLPDDVENPIIFKFGTDDIPILLLSVTAEESTNALYKILDDKVSNPLAR 166 + +L + P I + GT L A +AL + + + Sbjct: 649 RAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQH 708 Query: 167 ISGVGAVSISGAPVR-EVQVYCDPYKLEAYGLTIEGISNIIAQENRNTPGGSIDIGSNTY 225 + + +V +G + ++ D K +A G+++ I+ I+ T Sbjct: 709 PASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVK 768 Query: 226 TLRVQGEFT---DARQMLDLVVGSSNGRNVYLRDVADVKDYVEERAQETFNNGGRGGMIV 282 L VQ + + L V S+NG V +V + NG I Sbjct: 769 KLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSH-WVYGSPRLERYNGLPSMEIQ 827 Query: 283 IQKQSGANSVNIAKKVHDKLPEIQASLPSDVKLGVIVDTSTNILNTIDSLKETIMITFIV 342 + G +S + + + LP+ + S + + + I+F+V Sbjct: 828 GEAAPGTSS----GDAMALMENLASKLPAGIGYDW-TGMSYQERLSGNQAPALVAISFVV 882 Query: 343 VMFVVFIFLGRWRATFIIILTIPISLIAAFAYLLASGNTLNIISLSSLSIAIGMVVDDAI 402 V + W ++L +P+ ++ ++ + L IG+ +AI Sbjct: 883 VFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAI 942 Query: 403 VVLENVT-THIERGSKPKQAAVHATNEVAISVIASTLTMLAVFLPLTMVTGMAGILFKQL 461 +++E + G +A + A ++ ++L + LPL + G + Sbjct: 943 LIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAV 1002 Query: 462 GWIVSIIMIVSTVGALTLTPML 483 G V M+ +T+ A+ P+ Sbjct: 1003 GIGVMGGMVSATLLAIFFVPVF 1024
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 57.8 bits (139), Expect = 7e-12 Identities = 53/205 (25%), Positives = 85/205 (41%), Gaps = 20/205 (9%) Query: 1 MEKGIAIITGADGGMGREITLALAKEGFQIIMACKEPDKARTVCNKIKKESGNERIEIRQ 60 +E IA ITGA G+G + LA +G I P+K V + +K E+ + E Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHA--EAFP 63 Query: 61 IDLSSLASVRLFADKLLAEGRPVSRLMNNAGVLTTNI--RQTADGLETIVSVNYVGPYLL 118 D+ A++ ++ E P+ L+N AGVL + + + E SVN G + Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 119 TRLLLPLM--QRGSRIVNTVSCTYAIGRIESDFFSKGKNGRFARIPVYGNTKLALLLFTR 176 +R + M +R IV S + R + Y ++K A ++FT+ Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPRTS--------------MAAYASSKAAAVMFTK 169 Query: 177 ELAERVKRKGITVNAADPGIVSTNM 201 L + I N PG T+M Sbjct: 170 CLGLELAEYNIRCNIVSPGSTETDM 194
>INTIMIN#Intimin signature. Length = 939 Score = 36.6 bits (84), Expect = 3e-04 Identities = 19/93 (20%), Positives = 36/93 (38%), Gaps = 5/93 (5%) Query: 50 PGATVTLSATVTPEDATDKTITWSSSDEKVATVDG--GKVTGVAEGTATITATTKSGDKT 107 P + + TW S++ +A+VD G+VT +GT TI+ + Sbjct: 773 PTVWLQYGQVNLKASGGNGKYTWRSANPAIASVDASSGQVTLKEKGTTTISVISSD---N 829 Query: 108 ATCTVTVSEDAPAVIEDTLEGNITADRTISAAN 140 T T T++ ++ + + D + N Sbjct: 830 QTATYTIATPNSLIVPNMSKRVTYNDAVNTCKN 862
>INTIMIN#Intimin signature. Length = 939 Score = 30.4 bits (68), Expect = 0.044 Identities = 71/432 (16%), Positives = 132/432 (30%), Gaps = 67/432 (15%) Query: 372 TITATGITGIGGAAFRNTESLTTIEMPASVTTIGVLAFSGSGISKFTVAEGNNDFKTDTD 431 +TA G ++ ++T + V +GV F+ S A+ + T+ Sbjct: 526 KVTARAYDRNGNSSNNVLLTITVLSNGQVVDQVGVTDFTADKTS----AKADG---TEAI 578 Query: 432 DGKALLTSNGETLV-----------VFVPSATGSYTIPDGVKTIGSYSFSNTALTSIVIP 480 A + NG V SA + T G T+ L S Sbjct: 579 TYTATVKKNGVAQANVPVSFNIVSGTAVLSANSANTNGSGKATV--------TLKSDKPG 630 Query: 481 GTVTTIEEGAFESSALTSIVIPESVTTIGRMAFMQSALTSIVIPSSVTSIGYAAFNMSSA 540 V + + S+ + VI Q+ + I + T+ A N A Sbjct: 631 QVVVSAKTAEMTSALNANAVI----------FVDQTKASITEIKADKTT---AVANGQDA 677 Query: 541 LT-TVTFEGATAPTIGEGI--FANCNNLTGILVPANATGYTGEQASENWKTWATYIKSGQ 597 +T TV P + + L+ + GY + T + S + Sbjct: 678 ITYTVKVMKGDKPVSNQEVTFTTTLGKLSNSTEKTDTNGYAKVTLTST--TPGKSLVSAR 735 Query: 598 AQGQTQTDGEDTVPADGTLTGDGTTEADKVTLQGNAT----------LDNVKTQATVIDG 647 V T + + + G V +A+ +G Sbjct: 736 VSDVAVDVKAPEV----EFFTTLTIDDGNIEIVGTGVKGKLPTVWLQYGQVNLKASGGNG 791 Query: 648 NITSVITLTGTSNDLGTITNAGTLTLNADEGTTITVASVDN-SGTFIDNTGSVTKVTGDA 706 T ++ ++G +TL TTI+V S DN + T+ T + + + + Sbjct: 792 KYTWRSANPAIAS---VDASSGQVTLKEKGTTTISVISSDNQTATYTIATPN-SLIVPNM 847 Query: 707 SLDLTGSGAMPSDHTATGRVTLTTKPAVAEGADVSYQWQKQGNGNWTNVSNPYTRAAVAG 766 S +T + A+ + G++ + E +V W + S Sbjct: 848 SKRVTYNDAVNTCKNFGGKLP----SSQNELENVFKAWGAANKYEYYKSSQTIISWVQQT 903 Query: 767 SPDFTTSISGTY 778 + D + ++ TY Sbjct: 904 AQDAKSGVASTY 915
>FLGFLGJ#Flagellar protein FlgJ signature. Length = 313 Score = 48.6 bits (115), Expect = 2e-09 Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 25/163 (15%) Query: 12 SLPAALSA---GADFNLNPVVILSQAAFESGWGTSNLAVKH----NNFFGLTAYGASNAY 64 SLPA L++ G +L IL+QAA ESGWG + ++ N FG+ A G Sbjct: 157 SLPAQLASQQSGVPHHL----ILAQAALESGWGQRQIRRENGEPSYNLFGVKASGN---- 208 Query: 65 WHGGKVAVETSRY--------SLQFRRYDTRENSFLDFARLIRNNYR-SAWQVSHHMEAY 115 W G + T+ Y +FR Y + + D+ L+ N R +A + E Sbjct: 209 WKGPVTEITTTEYENGEAKKVKAKFRVYSSYLEALSDYVGLLTRNPRYAAVTTAASAEQG 268 Query: 116 AKEIAYSPYISELNGDDRET-YRRSLVQIAATVRAVIELTVDN 157 A+ + + Y ++ + + T + + I+ V + +DN Sbjct: 269 AQALQDAGYATDPHYARKLTNMIQQMKSISDKVSKTYSMNIDN 311
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 32.0 bits (73), Expect = 2e-04 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 6/90 (6%) Query: 33 MMTFQQTCTAISAYSTASPGDVKVVMDGLLFVLKEALLRGEVVQLGELGNFQINVGSSGT 92 M Q ++ + + D +D + + L +GE VQL GNF++ ++ Sbjct: 1 MANKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARK 60 Query: 93 ---PTT-EEFKASMIRKPRIVFRPSVSLKE 118 P T EE K + P F+ +LK+ Sbjct: 61 GRNPQTGEEIKIKASKVP--AFKAGKALKD 88
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 650 bits (1678), Expect = 0.0 Identities = 226/1046 (21%), Positives = 443/1046 (42%), Gaps = 54/1046 (5%) Query: 8 AIHRRGLMFVLFLFLAVVGYYSWTRLAIDAYPDIADTTVQVVTQVPGLAAEEIEQQISIP 67 I R +VL + L + G + +L + YP IA V V PG A+ ++ ++ Sbjct: 5 FIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVTQV 64 Query: 68 IERAMNGMPGLNVMRSKNT-FGLSTVVLVFDDGIDDYWARQRVQERLVDVE--LPYDA-V 123 IE+ MNG+ L M S + G T+ L F G D A+ +VQ +L LP + Sbjct: 65 IEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEVQQ 124 Query: 124 PGLNPLTSPTGEIFRYVLESDQLDI--RELTDLHKWVVIPRLKQVTGVADVSNFGGITTQ 181 G++ S + + SD +++D V L ++ GV DV FG Sbjct: 125 QGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA-QYA 183 Query: 182 YQIEVNPHKMEQYNVTLGDITEKIEKNNVNAGG------SMLSRGDLSYVIRGIGLVKDL 235 +I ++ + +Y +T D+ +++ N L L+ I K+ Sbjct: 184 MRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFKNP 243 Query: 236 KDLGRIVIKT-ENGVPVYLDDLGTLKYGSLERKGVLGFYDGVRDYSDGVEGIVQMLRGEN 294 ++ G++ ++ +G V L D+ ++ G + +G +++ G N Sbjct: 244 EEFGKVTLRVNSDGSVVRLKDVARVELGGENYNV-IARING----KPAAGLGIKLATGAN 298 Query: 295 PSQVLEGVHQAVDELNNETLPKGTRLHVFMDRTNLVDTTLHTVSHTLFEGMVLVVLVLIL 354 + + + EL P+G ++ D T V ++H V TLFE ++LV LV+ L Sbjct: 299 ALDTAKAIKAKLAELQ-PFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYL 357 Query: 355 FLGSWRGALLVALTIPLSLLIAFILMQLTDIPANLLSLG--AIDFGILVDGAIVMMETIL 412 FL + R L+ + +P+ LL F ++ N L++ + G+LVD AIV++E + Sbjct: 358 FLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV- 416 Query: 413 KKRERHPDEILTEDSILRRATEVARPIFFSTLIIITAYLPLFAFEHIEKKLFTPMAYTVG 472 +R D++ +++ + +++ + +++ ++P+ F ++ + T+ Sbjct: 417 -ERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIV 475 Query: 473 YALLGALAVALFLIPGLAFYAYYKPRKIYH-----------NRWLEKLGEIYNRQIIALL 521 A+ ++ VAL L P L KP H N + Y + +L Sbjct: 476 SAMALSVLVALILTPALC-ATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKIL 534 Query: 522 EKPKRVLLPLFLILVAAGVLSYTVGKDFLPPLDEGAIWVQVQLPPGISIEKSKAMGAELR 581 R LL LI+ VL + FLP D+G +QLP G + E+++ + ++ Sbjct: 535 GSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVT 594 Query: 582 KTL--KQFDEVSYVMTQVGRDDEG-AEAFSLSHIECGVGLKPYDTW-KFGKTKADLIEEM 637 + V V T G G A+ ++ + LKP++ + +I Sbjct: 595 DYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVS----LKPWEERNGDENSAEAVIHRA 650 Query: 638 SEKLLTMP-GYTVSFSQPIIDMVMDQIAGAHSDLAIKVYGDDIADTRHIADKVVNVLRTI 696 +L + G+ + F+ P I + + G +L I G ++++ + Sbjct: 651 KMELGKIRDGFVIPFNMPAI-VELGTATGFDFEL-IDQAGLGHDALTQARNQLLGMAAQH 708 Query: 697 PGA-ADVAIDQEPPLPQLQIIADRDRIAQYGLNFSDVADMIELAIGGKAISQIFVGSKSY 755 P + V + Q ++ D+++ G++ SD+ I A+GG ++ + Sbjct: 709 PASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVK 768 Query: 756 DVICRFDDASRNSPESIGNLLLTNGAGAKIPLSQVAEVKMTTGASTISREMNKRHLTIHV 815 + + D R PE + L + + G +P S G+ + R + I Sbjct: 769 KLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQG 828 Query: 816 NLR-GVDLTEFLNKANRLIDRDIDYNHDTVHLQWAGQFENQHRAYNRLAAVVPLALGIML 874 G + A L++ + W G + + N+ A+V ++ ++ Sbjct: 829 EAAPGTSSGD----AMALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVF 884 Query: 875 LLLFAACGKFRQAALMMCVVPLALFGGMLALNVRGMTLNVSSAVGFIALIGVAIQNGVIM 934 L L A + +M VVPL + G +LA + +V VG + IG++ +N +++ Sbjct: 885 LCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILI 944 Query: 935 ISHINNLRSRD-RGFKQSIITGAKHRFRPILMTAMVAVLGLLPASLSTGIGSDVQRPLAT 993 + +L ++ +G ++ + + R RPILMT++ +LG+LP ++S G GS Q + Sbjct: 945 VEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGI 1004 Query: 994 VIVYGLLFATVITLYVLPALYYLVEK 1019 ++ G++ AT++ ++ +P + ++ + Sbjct: 1005 GVMGGMVSATLLAIFFVPVFFVVIRR 1030
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 45.6 bits (108), Expect = 2e-07 Identities = 34/178 (19%), Positives = 74/178 (41%), Gaps = 22/178 (12%) Query: 117 KGY--YQAKQEMELALKSLKREKDLLQNKVG-VQKELEEAEVNYELKKKDYENAV----- 168 K A E E E + ++++ ++ E+ A+ Y+L + ++N + Sbjct: 246 KQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLR 305 Query: 169 -----AALKVFQIEPEDLVLGQPLIVRSPIAGEIVTDRI-VIGQYIKEDAEPVAVIANLN 222 L ++ + Q ++R+P++ ++ ++ G + AE + VI + Sbjct: 306 QTTDNIGLLTLELAKNEERQ-QASVIRAPVSVKVQQLKVHTEGGVVTT-AETLMVIVPED 363 Query: 223 KV-WVAAHVKEKDMGMIQSLDSVEIRLVAMPD---LPLPGKIYHVS--EMLDEDTRSV 274 V A V+ KD+G I + I++ A P L GK+ +++ + D+ V Sbjct: 364 DTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLV 421
>SECYTRNLCASE#Preprotein translocase SecY subunit signature. Length = 437 Score = 29.3 bits (66), Expect = 0.034 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 3/25 (12%) Query: 151 WLGEIINEYGDNTEALGVSLYMFAS 175 WLGE+I + G G+S+ MF S Sbjct: 176 WLGELITDRGIGN---GMSILMFIS 197
>PF03309#Bvg accessory factor Length = 271 Score = 131 bits (330), Expect = 3e-39 Identities = 59/259 (22%), Positives = 104/259 (40%), Gaps = 28/259 (10%) Query: 2 IEQGNTSSKVAVYNKKHMEASFV-------YKKFDVDELE----SLFGKY--DFKHGILS 48 I+ NT + V + + A V + DEL L G Sbjct: 5 IDVRNTHTVVGLISGSGDHAKVVQQWRIRTEPEVTADELALTIDGLIGDDAERLTGASGL 64 Query: 49 TVIGKNEVLNDYLRGKLRRF------IFLDETVKLPITVQYETPETLGKDRLAAAVGANY 102 + + + +R L ++ + ++ V+ I + + P+ +G DR+ + A Y Sbjct: 65 STV---PSVLHEVRVMLEQYWPNVPHVLIEPGVRTGIPLLVDNPKEVGADRIVNCLAA-Y 120 Query: 103 LEPGKDLLVIDAGTAITYELIEASGAYLGGNISPGMTTRFKALNFYTKKLPLVTEQEEVP 162 + G +V+D G++I +++ A G +LGG I+PG+ A + L V Sbjct: 121 HKYGTAAIVVDFGSSICVDVVSAKGEFLGGAIAPGVQVSSDAAAARSAALRRVELTRPRS 180 Query: 163 LLGTNTESAIQAGVVNGIVYEMDGYIEKLRIKYPN-----LLVFLTGGHSFYFESRLKNS 217 ++G NT +QAG V G +DG + ++R + V TG + L+ Sbjct: 181 VIGKNTVECMQAGAVFGFAGLVDGLVNRIRDDVDGFSGADVAVVATGHTAPLVLPDLRTV 240 Query: 218 IFADINLVLTGLNRILEYN 236 D +L L GL + E N Sbjct: 241 EHYDRHLTLDGLRLVFERN 259
>SECA#SecA protein signature. Length = 901 Score = 847 bits (2189), Expect = 0.0 Identities = 414/1147 (36%), Positives = 564/1147 (49%), Gaps = 281/1147 (24%) Query: 6 FMTKLFGNKSQRDLKEITPYVDKIKAVYPSIQKLSNDELRAKTDEIKQRIQDYVADERKQ 65 +TK+FG+++ R L+ + V+ I A+ P ++KLS++EL+ KT E + R++ Sbjct: 5 LLTKVFGSRNDRTLRRMRKVVNIINAMEPEMEKLSDEELKGKTAEFRARLEK-------- 56 Query: 66 VEDLRKGIDDKELEEREAIWAEVDKIEKAITDKMEVVLEESLPEVFSIMKETARRFTENE 125 VLE +PE F++++E ++R Sbjct: 57 ----------------------------------GEVLENLIPEAFAVVREASKRVF--- 79 Query: 126 EVVVTATDFDRDLATKHDFVRIEGDKAIFLNHWKAGGNEITWDMVHYDVQLFGGVVLHKG 185 M H+DVQL GG+VL++ Sbjct: 80 ------------------------------------------GMRHFDVQLLGGMVLNER 97 Query: 186 KIAEMATGEGKTLVATLPVFLNALTRNGVHVVTVNDYLSKRDSEWMGPLYMFHGLSVDCI 245 IAEM TGEGKTL ATLP +LNALT GVHVVTVNDYL++RD+E PL+ F GL+V Sbjct: 98 CIAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGIN 157 Query: 246 DKHQPNSDARRAAYNADITFGTNNEFGFDYLRDNMAISPNDLVQRKHNYAIVDEVDSVLI 305 P + A+R AY ADIT+GTNNE+GFDYLRDNMA SP + VQRK +YA+VDEVD Sbjct: 158 LPGMP-APAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVD---- 212 Query: 306 DDARTPLIISGPIPRGEEQLFEQFRPNVEIVVNAQKDLCSKLLIEAKKKMASSDPKEVEE 365 S L+ EA+ + S P E Sbjct: 213 ---------------------------------------SILIDEARTPLIISGPAE--- 230 Query: 366 GSIQLYRSFKGYPRNKALIKFLSEQGIKAQMLKTEEYFMSENMRHMHEATDELYFVIDEK 425 S + Y R +I L Q + E +F +DEK Sbjct: 231 ------DSSEMYKRVNKIIPHLIRQEKEDS----------------ETFQGEGHFSVDEK 268 Query: 426 NNSIELSDKGIDLLTGRSDDPTFFVLPDITSELSQLENFKGTEEEKQAKKDEILANYSVK 485 + + L+++G+ L+ V I E L + AN + Sbjct: 269 SRQVNLTERGLVLIE------ELLVKEGIMDEGESLYS---------------PANIML- 306 Query: 486 SERVHTINQLLKAYTLFEKDDEYVVMDNKVMIVDEQTGRIMDGRRYSDGLHQAIEAKEGV 545 +H + L+A+ LF +D +Y+V D +V+IVDE TGR M GRR+SDGLHQA+EAKEGV Sbjct: 307 ---MHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGV 363 Query: 546 KVEAATQTFATITLQNYFRMYHKLSGMTGTAETEAGEFWDIYKLDVVVIPTNRPIARNDM 605 +++ QT A+IT QNYFR+Y KL+GMTGTA+TEA EF IYKLD VV+PTNRP+ R D+ Sbjct: 364 QIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDL 423 Query: 606 NDRIYKTKREKYAAVIEEISALVEAGRPVLVGTTSVEISELLSRMLTLRKIKHNVLNAKL 665 D +Y T+ EK A+IE+I G+PVLVGT S+E SEL+S LT IKHNVLNAK Sbjct: 424 PDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKF 483 Query: 666 HQKEAEIVALAGQSGTVTIATNMAGRGTDIKL---------------------------- 697 H EA IVA AG VTIATNMAGRGTDI L Sbjct: 484 HANEAAIVAQAGYPAAVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQV 543 Query: 698 -SAEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSVFYVSLEDNLMRLFASDKI 756 V AGGL IIGTERHESRR+D QLRGR+GRQGD GSS FY+S+ED LMR+FASD++ Sbjct: 544 RHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDALMRIFASDRV 603 Query: 757 AGLMDKLGFKEGEVLEHNMLSKSVERAQKKVEENNFGIRKRLLEYDDVMNSQRNVIYTRR 816 +G+M KLG K GE +EH ++K++ AQ+KVE NF IRK+LLEYDDV N QR IY++R Sbjct: 604 SGMMRKLGMKPGEAIEHPWVTKAIANAQRKVESRNFDIRKQLLEYDDVANDQRRAIYSQR 663 Query: 817 RHALMGERIGLDVLNTIYDTSTAIAEEHSDGLDYEGFKLELFKTFAMESPFTEEEFKSMK 876 L + + + D A + + E E++ ++ + + Sbjct: 664 NELLDVSDVSETINSIREDVFKATIDAYIPPQSLE----EMWDIPGLQERLKNDFDLDLP 719 Query: 877 ASQLGDKLFENALQTFKRRMERMTQVANPVIKQVYEHQGAMYENIMIPVTDGKRMYNVSC 936 ++ DK E +T + R ++ Q E Sbjct: 720 IAEWLDKEPELHEETLRER----------ILAQSIE------------------------ 745 Query: 937 NLKEAYETESKVIAKSFQKSIVLHTIDEAWKEHLREMDELRHSVQNASYENKDPLLIYKL 996 + E + + F+K ++L T+D WKEHL MD LR + Y KDP YK Sbjct: 746 VYQRKEEVVGAEMMRHFEKGVMLQTLDSLWKEHLAAMDYLRQGIHLRGYAQKDPKQEYKR 805 Query: 997 ESYNLFKTMVDTMNRKTAAVLMRGQIPVREEPTEEEKRAMAQRQAAAQAAQQAAERQRIE 1056 ES+++F M++++ + + L + Q+ + EE E E++ + + AQ Q Sbjct: 806 ESFSMFAAMLESLKYEVISTLSKVQVRMPEEVEELEQQRRMEAERLAQMQQ--------- 856 Query: 1057 VKQAGPEQRQDMSRYRTEKTDISGNNDPEERAPQQPKQEPVRAEKRVGRNDLCPCGSGKK 1116 +S +D A Q E++VGRND CPCGSGKK Sbjct: 857 ---------------------LSHQDDDSAAAAALAAQTG---ERKVGRNDPCPCGSGKK 892 Query: 1117 YKNCHGQ 1123 YK CHG+ Sbjct: 893 YKQCHGR 899
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 30.4 bits (69), Expect = 7e-04 Identities = 16/79 (20%), Positives = 44/79 (55%), Gaps = 6/79 (7%) Query: 28 DVAARLSKISTVSRGDTYAVLANLGDVLADMLSTGQSVRLMGIGTFYLTCQSVGQGVDMP 87 D+ A++++ + +++ D+ A + + ++ L+ G+ V+L+G G F + ++ +G + P Sbjct: 6 DLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGRN-P 64 Query: 88 E-----EVSPRQITAVKVG 101 + ++ ++ A K G Sbjct: 65 QTGEEIKIKASKVPAFKAG 83
>BCTERIALGSPC#Bacterial general secretion pathway protein C signature. Length = 272 Score = 31.5 bits (71), Expect = 0.006 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 13/58 (22%) Query: 238 AGLQPGDSIVSING-------QATPLFEDVAKMLDQNKGKDITLGFYRDGMEQSVVIQ 288 GLQ D V++NG QA E +A + + TL RDG Q + ++ Sbjct: 216 VGLQDNDMAVALNGLDLRDAEQAKKAMERMADV------HNFTLTVERDGQRQDIYME 267
>DNABINDNGFIS#DNA-binding protein FIS signature. Length = 98 Score = 28.4 bits (63), Expect = 0.006 Identities = 15/51 (29%), Positives = 24/51 (47%) Query: 27 VDVEKILVYIDESQQQDIKNALGDNLFIDLLRYVNREEGSPVNEAYENLLH 77 V+ + + V SQ Q + L D++ L Y + G VN+ YE +L Sbjct: 6 VNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLA 56
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 30.0 bits (67), Expect = 0.046 Identities = 46/257 (17%), Positives = 101/257 (39%), Gaps = 19/257 (7%) Query: 292 QLSKDKAALDKQTRELDVANAKAQ---YESSELRKKAEDRVKYTAEERLKFVQEANAKEQ 348 L +KAAL+ + EL+ A A S K E A + + Sbjct: 180 TLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMN 239 Query: 349 EILDNRLKIAEEQFRIAQEEATYNENSKEVNEDLTKMEANLYLV-----RKEHSDKTKEL 403 + KI + A EA E K + + A+ + K + K Sbjct: 240 FSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKAD 299 Query: 404 MTKENEIRNQSLTAEKTRLAQAKKATEEAVKQKQKELELIRQAEDAALSLVKEGIEKQR- 462 + ++++ N + + + L A + ++ ++ + ++LE + +A+ ++ ++ R Sbjct: 300 LEHQSQVLNANRQSLRRDLD-ASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASRE 358 Query: 463 -------QVINVQYDRQIEDLKRK-LSTEKNLTDAAKKALNDSIILAEQKRDADLKKLSD 514 + ++ +I + R+ L + + + AKK + ++ A K A L+KL+ Sbjct: 359 AKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQVEKALEEANSKLAA-LEKLNK 417 Query: 515 DSIQVQIKKETERIQLQ 531 + + + E E+ +LQ Sbjct: 418 ELEESKKLTEKEKAELQ 434
>PF04183#IucA / IucC family Length = 580 Score = 31.8 bits (72), Expect = 0.002 Identities = 20/125 (16%), Positives = 39/125 (31%), Gaps = 14/125 (11%) Query: 57 GLKVRVIESDGTELIAIKRKDL--------STEDARRKALALVDNHTSDTSFFD-----F 103 G+ RV+ D + + +++ D + A H T F Sbjct: 433 GVPQRVLLKDFQGDMRLVKEEFPEMDSLPQEVRDVTSRLSADYLIHDLQTGHFVTVLRFI 492 Query: 104 DAIVKDFGVDELEAWELEINEAKDYSDKNREIDVEEWEDAHELILKFDAETYLRVKESLM 163 ++ GV E ++L DY K+ ++ E + + VK + Sbjct: 493 SPLMVRLGVPERRFYQLLAAVLSDYMKKHPQMS-ERFALFSLFRPQIIRVVLNPVKLTWP 551 Query: 164 TIDSD 168 +D Sbjct: 552 DLDGG 556
>SUBTILISIN#Subtilisin serine protease family (S8) signature. Length = 326 Score = 27.9 bits (62), Expect = 0.036 Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 11/69 (15%) Query: 74 IVGMDNLIGDDGDFKNADVYGIKM-GKNDSSTDTVILMGERY----------LQIGGSVD 122 I +N G G AD+ IK+ K S I+ G Y + +GG D Sbjct: 94 IAATENENGVVGVAPEADLLIIKVLNKQGSGQYDWIIQGIYYAIEQKVDIISMSLGGPED 153 Query: 123 FSSPAQALE 131 +A++ Sbjct: 154 VPELHEAVK 162
>LCRVANTIGEN#Low calcium response V antigen signature. Length = 326 Score = 25.8 bits (56), Expect = 0.032 Identities = 13/50 (26%), Positives = 22/50 (44%) Query: 2 NELRDILKMVQVVQCECFGTEVTIAIFTNQKYFSVHVQRADRDYEVVYSD 51 N+L++ +K V+ T+ + F +FS+ R D D V D Sbjct: 92 NQLQNGIKRVKEFLESSPNTQWELRAFMAVMHFSLTADRIDDDILKVIVD 141
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 37.5 bits (87), Expect = 2e-04 Identities = 43/170 (25%), Positives = 65/170 (38%), Gaps = 46/170 (27%) Query: 232 LLVGPPGTGKTLLAKAV---AGEADVPFF---------SLSGSDF--VEMFVGVGASRVR 277 ++ G GTGK L+A+A+ + PF L S+ E GA Sbjct: 164 MITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRS 223 Query: 278 D-LFRQAKEKSPCIVFIDEIDAVGRARGKNANMNSNDERENTLNQLLT-EMDGFGSNSG- 334 F QA+ + +F+DEI + D + L L E G + Sbjct: 224 TGRFEQAEGGT---LFLDEIGDM-----------PMDAQTRLLRVLQQGEYTTVGGRTPI 269 Query: 335 ---VIILAATNRADILDKALLRAGRFDRQ--------ISVELPDLNERKE 373 V I+AATN+ D+ K + G F R+ + + LP L +R E Sbjct: 270 RSDVRIVAATNK-DL--KQSINQGLF-REDLYYRLNVVPLRLPPLRDRAE 315
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 374 bits (961), Expect = e-132 Identities = 153/334 (45%), Positives = 220/334 (65%), Gaps = 8/334 (2%) Query: 6 FTQEIAMDLGTANTIIISGGK-VVVDQPSVVALDRR----TDKVLAVGEKARQMHGKTHE 60 F+ ++++DLGTANT+I G+ +V+++PSVVA+ + V AVG A+QM G+T Sbjct: 9 FSNDLSIDLGTANTLIYVKGQGIVLNEPSVVAIRQDRAGSPKSVAAVGHDAKQMLGRTPG 68 Query: 61 NIRTIRPLRDGVIADFFAAEQMIRGMIKMINPKHRWFSPSLRIVVCIPSGSTEVEIRAVR 120 NI IRP++DGVIADFF E+M++ IK ++ + PS R++VC+P G+T+VE RA+R Sbjct: 69 NIAAIRPMKDGVIADFFVTEKMLQHFIKQVHSN-SFMRPSPRVLVCVPVGATQVERRAIR 127 Query: 121 DSAEHAGGRDVYMIYEPMAAAIGIGIDVEAPEGNMIVDIGGGTTEIAVISLGGIVSNKSI 180 +SA+ AG R+V++I EPMAAAIG G+ V G+M+VDIGGGTTE+AVISL G+V + S+ Sbjct: 128 ESAQGAGAREVFLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNGVVYSSSV 187 Query: 181 RIAGDDLTADIMEYMRRQHNVKVGERTAELIKINVGSALTFLDNPPEDYIVHGPNQMTAL 240 RI GD I+ Y+RR + +GE TAE IK +GSA + + V G N + Sbjct: 188 RIGGDRFDEAIINYVRRNYGSLIGEATAERIKHEIGSAYP--GDEVREIEVRGRNLAEGV 245 Query: 241 PMEVPVSYQEIAHCLEKSISKMEAAILSALEQTPPELYADIVRNGIYLAGGGALMRGLDK 300 P ++ EI L++ ++ + +A++ ALEQ PPEL +DI G+ L GGGAL+R LD+ Sbjct: 246 PRGFTLNSNEILEALQEPLTGIVSAVMVALEQCPPELASDISERGMVLTGGGALLRNLDR 305 Query: 301 RLTDKINIPFHIAEDPLHAVAIGTGVALKNIDKF 334 L ++ IP +AEDPL VA G G AL+ ID Sbjct: 306 LLMEETGIPVVVAEDPLTCVARGGGKALEMIDMH 339
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 75.9 bits (187), Expect = 5e-22 Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 3/84 (3%) Query: 2 NKTDLIKSMASRVGCTEVVARQMVEVLME---EGLSDGNDIVLQGFGTFRPWKQSFRAGR 58 NK DLI +A T+ + V+ + L+ G + L GFG F +++ R GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGR 62 Query: 59 NPRTGESCPIAPRTSVRFKVGKNL 82 NP+TGE I FK GK L Sbjct: 63 NPQTGEEIKIKASKVPAFKAGKAL 86
>NAFLGMOTY#Sodium-type flagellar protein MotY precursor signature. Length = 293 Score = 28.9 bits (64), Expect = 0.007 Identities = 15/38 (39%), Positives = 20/38 (52%) Query: 67 VLVASYASPEGSYQHNETLSRQRAEEFRTYISRRYLSE 104 VLVA+Y +++LS +RAE RTY L E Sbjct: 218 VLVATYTDSTDGKSESQSLSERRAESLRTYFESLGLPE 255
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 30.4 bits (68), Expect = 0.021 Identities = 20/122 (16%), Positives = 38/122 (31%), Gaps = 14/122 (11%) Query: 38 EAEKEAEVIKKNKLLEVKEKFLHLKADLEKQVSARNAKIQSAEGKLKQRELTLNQRQEDL 97 E E + + KA LE + + ++ A + + + Sbjct: 231 EKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEK 290 Query: 98 QRKNCEI----------DAVKENLATQLELVDRRKQDLEKLHQREIEQLE----ALSGLS 143 E +A +++L L+ K+ LE HQ+ EQ + + L Sbjct: 291 AALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLR 350 Query: 144 AD 145 D Sbjct: 351 RD 352
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.3 bits (65), Expect = 0.015 Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 8/40 (20%) Query: 32 EFVAVM-GPSGCGKSTLLNLLGLLDNPTSGELWFLEEEVS 70 ++ V+ G G GKSTL+N L G +F + Sbjct: 596 DYSVVLEGTGGIGKSTLINTLV-------GLDFFSDTHFD 628
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 33.1 bits (75), Expect = 0.007 Identities = 47/252 (18%), Positives = 84/252 (33%), Gaps = 28/252 (11%) Query: 39 ITEDNSVYRIHGTYDVQKQKLPSQETGYGTT-DQNKSKAVIVVASGIQVKITLENVNIEN 97 D+ + R GT V+ KL + D + + +G Q + ++ + ++ Sbjct: 100 QLSDDGIRRFLGTVTVKAGKLVADHATLANVGDTWDDDGIALYVAGEQAQASIADSTLQG 159 Query: 98 LPEDKYYCALYADEAKKVELTLTGDNSLVGGHDLPAICAPTGKDSELIIKGDGKLTAKGG 157 A + +T+ + GG + A+ + +D Sbjct: 160 --------AGGVQIERGANVTVQRSAIVDGGLHIGALQSLQPEDLPPSRVVLRDTNVTAV 211 Query: 158 EQAAGIGSRYSKDA-KGTITIEDGTIIAYGNGYGAGIGTSANSNGGTIRIKGGNITATG- 215 + + A + T+ DG I G G A + I+ G+ A G Sbjct: 212 PASGAPAAVSVLGASELTL---DGGHITGGRAAGVAAMQGAVVHLQRATIRRGDAPAGGA 268 Query: 216 --GDSGPGIGVSGTAAP----------ANPPITSGTIEISGGIVNATGYNGMGAGEGKVG 263 G + PG V G P ++ ++E++ IV A A G Sbjct: 269 VPGGAVPGGAVPGGFGPGGFGPVLDGWYGVDVSGSSVELAQSIVEAPELG--AAIRVGRG 326 Query: 264 ETVTISGGIISA 275 VT+SGG +SA Sbjct: 327 ARVTVSGGSLSA 338
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.3 bits (65), Expect = 0.009 Identities = 7/31 (22%), Positives = 16/31 (51%) Query: 128 GYEIAEIAEITGSQVEAIRSNLSRARKKIRE 158 YE++E+ + EA+++ S + + R Sbjct: 644 AYELSEMTAFRRADAEAVKAFFSSRKDRYRG 674
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 101 bits (254), Expect = 3e-27 Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 1/121 (0%) Query: 2 KILIVEDEDSLREVMIRSLEKERYVVESAANYQDALLKINDYDYDCIVLDIMLPGGSGLH 61 IL+ +D+ ++R V+ ++L + Y V +N I D D +V D+++P + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 LLEELKKMRKKDSVIIVSAKDSIEDKVTGLDLGADDYLTKPFHLAELNARI-KCIIRRKQ 120 LL +KK R V+++SA+++ + + GA DYL KPF L EL I + + K+ Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 121 Q 121 + Sbjct: 125 R 125
>PF06580#Sensor histidine kinase Length = 349 Score = 34.5 bits (79), Expect = 6e-04 Identities = 26/100 (26%), Positives = 37/100 (37%), Gaps = 19/100 (19%) Query: 339 QVLV-NIIKNAAESIERDGKIYIRTSR--NPVCLEIADTGKGIDKETEKKLFSPFFSTKP 395 Q LV N IK+ + + GKI ++ ++ V LE+ +TG K T Sbjct: 261 QTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNT------------K 308 Query: 396 NGQGIGLIFIREVLQ---KQNCSFSLRTYTDGLTRFRILF 432 G GL +RE LQ L G +L Sbjct: 309 ESTGTGLQNVRERLQMLYGTEAQIKLSE-KQGKVNAMVLI 347
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 471 bits (1213), Expect = e-166 Identities = 160/483 (33%), Positives = 255/483 (52%), Gaps = 40/483 (8%) Query: 2 ILIIDDDAAVRSSLTFLLKRAGFEPEAVPGPEEALVIVRREAPQLILMDMNFTLTTTGEE 61 IL+ DDDAA+R+ L L RAG++ + L++ D+ E Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMP----DEN 61 Query: 62 GIQLLKQVKIFQPDVPVILMTAWGSISLAVQGMQAGAFDFVTKPWNNLVLLKSIRTALEL 121 LL ++K +PD+PV++M+A + A++ + GA+D++ KP++ L+ I AL Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 122 NEQKKMQKSPLNRNDADSKFHFEKIVGQSDALMDVLGTVSRIAPTNASVLITGESGTGKE 181 +++ K + D +VG+S A+ ++ ++R+ T+ +++ITGESGTGKE Sbjct: 122 -PKRRPSKLEDDSQDGMP------LVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKE 174 Query: 182 LIAEAIHANSPRMKEAFVKVNLGGLSQSLFESEMFGHKKGAFTDAYIDRTGRFEMANKGT 241 L+A A+H R FV +N+ + + L ESE+FGH+KGAFT A TGRFE A GT Sbjct: 175 LVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGT 234 Query: 242 IFLDEIGDLELSCQVKLLRVLQDQTFEVLGDSRPRKVDIRVVSATNCNLPEMVAARTFRE 301 +FLDEIGD+ + Q +LLRVLQ + +G P + D+R+V+ATN +L + + FRE Sbjct: 235 LFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFRE 294 Query: 302 DLFYRINLITIHLPALRERKDDIPLLARYFADKQSEVNGLPKVTFSSDAVSFLQRLPYPG 361 DL+YR+N++ + LP LR+R +DIP L R+F +Q+E GL F +A+ ++ P+PG Sbjct: 295 DLYYRLNVVPLRLPPLRDRAEDIPDLVRHFV-QQAEKEGLDVKRFDQEALELMKAHPWPG 353 Query: 362 NIRELKNLVERTMLVSGKSLLDVSDFEGQCLNLGNKQSVRKGGAVSFE------------ 409 N+REL+NLV R + + ++ E + + + K A S Sbjct: 354 NVRELENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMR 413 Query: 410 ----------------GMTLDEIERRTILQALDTHEGNLSHVASALGISRAALYRRLEKY 453 L E+E IL AL GN A LG++R L +++ + Sbjct: 414 QYFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIREL 473 Query: 454 GIP 456 G+ Sbjct: 474 GVS 476
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 89.0 bits (221), Expect = 4e-27 Identities = 30/84 (35%), Positives = 43/84 (51%) Query: 2 NKSKLIGQIAADTGMTRAAIKAVLNSFIDNTTEALQEGDTVVFQGFGTFLPWEQTERPAR 61 NK LI ++A T +T+ A +++ + L +G+ V GFG F E+ R R Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGR 62 Query: 62 NPQTGEPVMIKPRTSVKFRAGSDL 85 NPQTGE + IK F+AG L Sbjct: 63 NPQTGEEIKIKASKVPAFKAGKAL 86
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 29.1 bits (65), Expect = 0.009 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 5/56 (8%) Query: 88 YKGKGYGKSLMEYCIADAKEKGKSGICMLGAEKQKSWLSDQSFAKKFGFEV--VDT 141 Y+ KG G +L+ I AKE G+ ML E Q +S F K F + VDT Sbjct: 101 YRKKGVGTALLHKAIEWAKENHFCGL-ML--ETQDINISACHFYAKHHFIIGAVDT 153
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 31.6 bits (71), Expect = 0.002 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%) Query: 60 AWVVELALEDGCHIELDDLGYFSPSLKTTPNKENGNKGTVYVDGINYRCSTSLR 113 + + L LE G IEL P +K + +E GTV+ +GI +R T LR Sbjct: 813 SVLGRLGLEVGKRIELAGGRQVQPYIKASVLQEFDGAGTVHTNGIAHR--TELR 864
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 36.8 bits (85), Expect = 1e-04 Identities = 38/188 (20%), Positives = 73/188 (38%), Gaps = 8/188 (4%) Query: 211 FTQKNIWKQIGFLFLYYSGLIGTLAMLKPYLVDLGY--SMKEIGVMSGVIGTSFGFIFSF 268 + + + + G ++M+ PY++ + S EIG + GT IF + Sbjct: 253 GKNIPFMIGVLCGGIIFGTVAGFVSMV-PYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGY 311 Query: 269 VGGFIVRRIGRHWARILFAVFVLLATLYFLGLSYVTPTLGLLHA-GIALLWGSYGMATIV 327 +GG +V R G + + V ++ FL S++ T I + G V Sbjct: 312 IGGILVDRRG---PLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFTKTV 368 Query: 328 VYTTAMDCVRPGREGTDFTIQTVITHLS-GMVMAILSGKIADHTGYHGLFFFEVSLAALS 386 + T ++ G ++ + LS G +AI+ G ++ L EV + Sbjct: 369 ISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSIPLLDQRLLPMEVDQSTYL 428 Query: 387 LVYILIVF 394 +L++F Sbjct: 429 YSNLLLLF 436
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 32.0 bits (73), Expect = 2e-04 Identities = 13/56 (23%), Positives = 31/56 (55%) Query: 30 EVADRLAQISTVSRSDVYAVLMDLAGVLADYMAQGRSVKIDGLGTFYYTLTAAGQG 85 ++ ++A+ + +++ D A + + ++ Y+A+G V++ G G F AA +G Sbjct: 6 DLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKG 61
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 78.2 bits (193), Expect = 8e-23 Identities = 26/84 (30%), Positives = 40/84 (47%) Query: 2 NRTDVITELAAKLGVTSCQSRQFLDALEEVLTEALEEDKAIQFQGFGTFVPWKQTERPGR 61 N+ D+I ++A +T S +DA+ ++ L + + +Q GFG F ++ R GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGR 62 Query: 62 NPHNGVPCLIAPRVSVKFKPGKFL 85 NP G I FK GK L Sbjct: 63 NPQTGEEIKIKASKVPAFKAGKAL 86
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 28.9 bits (64), Expect = 0.013 Identities = 16/51 (31%), Positives = 27/51 (52%) Query: 87 NAFRTKINQPEYEEYIQYVNEHSVDDVSYQLEYQEFVTKFRAILKTLPETQ 137 N ++K PEY+ Y QY+ E + V L +Q+ +F+ + K L T+ Sbjct: 734 NVLKSKQIAPEYKNYFQYLKERITNQVQLLLTHQKSNIEFKLLYKQLNFTE 784
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 42.2 bits (99), Expect = 4e-07 Identities = 21/119 (17%), Positives = 43/119 (36%), Gaps = 5/119 (4%) Query: 23 EELIEKSYDFLDKKDLVSAEESLRAAMRLEPGNPMNYALLTNLGSIQRRQGKLQDALLSY 82 E+L +++ A + +A L + + LG+ ++ G+ A+ SY Sbjct: 37 EQLYSLAFNQYQSGKYEDAHKVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSY 93 Query: 83 TAALSGRPNNPTILENRASLYSELGETEKALNDYDAL--LIVEPTNEEALYCRGLIYIQ 139 + P + A + GE +A + LI + T + L R ++ Sbjct: 94 SYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELIADKTEFKELSTRVSSMLE 152 Score = 30.7 bits (69), Expect = 0.004 Identities = 17/96 (17%), Positives = 33/96 (34%) Query: 61 LLTNLGSIQRRQGKLQDALLSYTAALSGRPNNPTILENRASLYSELGETEKALNDYDALL 120 L +L Q + GK +DA + A + + +G+ + A++ Y Sbjct: 38 QLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGA 97 Query: 121 IVEPTNEEALYCRGLIYIQKKNYIWAEQDFDKILEM 156 I++ + +QK AE E+ Sbjct: 98 IMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQEL 133
>PF06580#Sensor histidine kinase Length = 349 Score = 39.5 bits (92), Expect = 8e-06 Identities = 18/107 (16%), Positives = 36/107 (33%), Gaps = 23/107 (21%) Query: 171 LMNNACYAVFSKSKEIADATYQPTIRICLKKEGDRINLSIEDNGQGISEETKKKLYTPFF 230 L+ N ++ + I + K+ + L +E+ G + TK Sbjct: 263 LVENGIKHGIAQLPQ------GGKILLKGTKDNGTVTLEVENTGSLALKNTK-------- 308 Query: 231 TTKPIGEGTGLGLSITKSIIEQKH--NGTIGMDSRPGEYTRFTISIP 275 E TG GL + ++ + I + + G+ + IP Sbjct: 309 ------ESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVN-AMVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 90.3 bits (224), Expect = 6e-22 Identities = 35/147 (23%), Positives = 64/147 (43%), Gaps = 12/147 (8%) Query: 2 AIKILSVDDELDLERLLTQYFRRKIKKGEYEFYFAHNGLEALQLMLVQPDFDVILSDINM 61 IL DD+ + +L Q R Y+ N + + D D++++D+ M Sbjct: 3 GATILVADDDAAIRTVLNQALSRA----GYDVRITSNAATLWRW-IAAGDGDLVVTDVVM 57 Query: 62 PEMDGLTLLAKINEMQNPALKCIMVSAYGDMDNIRSAMNQGAFDFTTKPINLEDLERTIE 121 P+ + LL +I + P L +++SA A +GA+D+ KP +L +L I Sbjct: 58 PDENAFDLLPRIKKA-RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116 Query: 122 KAAEQISFIKKAQQEHSQLESIRNDLH 148 +A + + ++ S+LE D Sbjct: 117 RA------LAEPKRRPSKLEDDSQDGM 137
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 29.8 bits (67), Expect = 0.017 Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 5/102 (4%) Query: 9 ELKKRVSWGSVFGGVVTVLAVSILLSVLGSSIGLFMFDPFADNPVSGIGTTVGIGTAVAL 68 W V ++AV ++ ++G + ++ F ++ TT+GI A Sbjct: 198 NPLASFRWARGMTVVAALMAVFFIMQLVGQ-VPAALWVIFGEDRFHWDATTIGISLAAFG 256 Query: 69 IVSMIAGGFVAGKLAGVDGLIH----GFLVWGTTLIVGAFFG 106 I+ +A + G +A G G + GT I+ AF Sbjct: 257 ILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFAT 298
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 59.2 bits (143), Expect = 8e-12 Identities = 64/277 (23%), Positives = 99/277 (35%), Gaps = 74/277 (26%) Query: 136 YSFVPYVGFGWAFGWDYANQPAYAGG---------------------------HTRVNGM 168 Y PYVGF G+D+ + Y G +TR+ GM Sbjct: 64 YQVNPYVGF--EMGYDWLGRMPYKGSVENGAYKAQGVQLTAKLGYPITDDLDIYTRLGGM 121 Query: 169 TLNAGIVNNFKLSDRVT-------LSIEFAAT---AVKSEFNQVKSSGNYDILGTASAGL 218 A +N + T +E+A T A + E+ + G+ +GT Sbjct: 122 VWRADTKSNVYGKNHDTGVSPVFAGGVEYAITPEIATRLEYQWTNNIGDAHTIGTRPDNG 181 Query: 219 IFNVGKSATFSEAELRNPQEVDELNSRINELYAQNQELAKRPIDCPDCPEPEVITEKVVE 278 + ++G S F + E +A P P PEV T+ Sbjct: 182 MLSLGVSYRFGQGE-------------------AAPVVAPAPA-----PAPEVQTKHFT- 216 Query: 279 FEENPLINNVVLFKINQTKVDPYQGVNIYNIAQYLKDN--PQFKVRVIGYTDRKTGTSQI 336 + + VLF N+ + P + + L + V V+GYTDR G+ Sbjct: 217 ------LKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDR-IGSDAY 269 Query: 337 NEKLSAERAQNVARILISDYNINRDRVIVEWVGDKEP 373 N+ LS RAQ+V LIS I D++ +G+ P Sbjct: 270 NQGLSERRAQSVVDYLISK-GIPADKISARGMGESNP 305
>ENTEROVIROMP#Enterobacterial virulence outer membrane protein signature. Length = 171 Score = 29.5 bits (66), Expect = 0.004 Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 12/84 (14%) Query: 86 DHLSLYPLAGFNLQNNFQGKRTVKGEDGEVTLDSHSSTNFGFNVGGGLTYNLNPRNFLNV 145 D S+Y + G K + E H ++++GF+ G GL +N L+ Sbjct: 98 DWASIYGVVGVG---------YGKFQTTEYPTYKHDTSDYGFSYGAGLQFNPMENVALDF 148 Query: 146 EYKYVFGKDNSSVIAF--GWGYRF 167 Y+ + V + G GYRF Sbjct: 149 SYEQS-RIRSVDVGTWIAGVGYRF 171
>BONTOXILYSIN#Bontoxilysin signature. Length = 1196 Score = 35.3 bits (81), Expect = 3e-04 Identities = 20/93 (21%), Positives = 42/93 (45%), Gaps = 3/93 (3%) Query: 126 VTESFSIECRVKYNEFAGGDQNVISCESGNSGWMLRSSGNVIQFYIND--GNWTGCQTSS 183 +T +F+I +++ +I + N GW + N + F I D GN S+ Sbjct: 897 LTNNFTICFWLRFTGKNDDKTRLIGNKVNNCGWEIYFEDNGLVFEIIDSNGNQESVYLSN 956 Query: 184 LELNRWYHVAATYQKGGGIAL-YLDGKKVGSSS 215 + + WY+++ + + L +++ K V + S Sbjct: 957 IINDNWYYISISVDRLKDQLLIFINDKNVANVS 989
>FLGFLGJ#Flagellar protein FlgJ signature. Length = 313 Score = 48.6 bits (115), Expect = 1e-09 Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 17/115 (14%) Query: 2 DKQSFTTKYLPAARMAGELYGMNPVVILAQAAIESGWGESRL----ATCYNNFFGLTGYG 57 D ++F + A++A + G+ +ILAQAA+ESGWG+ ++ N FG+ Sbjct: 148 DSKAFLAQLSLPAQLASQQSGVPHHLILAQAALESGWGQRQIRRENGEPSYNLFGVK--- 204 Query: 58 VSNAYWHGGKTDL------DNPGGLV---FRRYDRAENSFLDFARLIATAYKQAA 103 ++ W G T++ + V FR Y + D+ L+ + AA Sbjct: 205 -ASGNWKGPVTEITTTEYENGEAKKVKAKFRVYSSYLEALSDYVGLLTRNPRYAA 258
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 32.4 bits (74), Expect = 2e-04 Identities = 14/48 (29%), Positives = 24/48 (50%) Query: 39 ELCDAVAESSTASSGDVKVVIDRVIRFLLMFLGRGEVVQCGDLGTFQL 86 +L VAE++ + D +D V + +L +GE VQ G F++ Sbjct: 6 DLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEV 53
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 40.8 bits (95), Expect = 6e-06 Identities = 17/102 (16%), Positives = 36/102 (35%), Gaps = 1/102 (0%) Query: 230 EVEDEILSEIEKRDTDIMQKEQELEQKRRELEQSKQAIEQSKQVIEQSKLELEQSKQELE 289 E+ +E+ + EK + E K +ELE K +E++ + + LE Sbjct: 89 ELTEELSNAKEKLRKNDKSL-SEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLE 147 Query: 290 QSKQELEQKDKMLQEMVRMLTQAGISPEDIAQKLSLSLQDVK 331 K L + L++ + + + L ++ Sbjct: 148 AEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALE 189 Score = 40.4 bits (94), Expect = 7e-06 Identities = 15/105 (14%), Positives = 32/105 (30%) Query: 230 EVEDEILSEIEKRDTDIMQKEQELEQKRRELEQSKQAIEQSKQVIEQSKLELEQSKQELE 289 ++ L T K + LE ++ L K +E++ + + LE Sbjct: 123 ADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLE 182 Query: 290 QSKQELEQKDKMLQEMVRMLTQAGISPEDIAQKLSLSLQDVKNLL 334 K LE + L++ + + + L + Sbjct: 183 AEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARK 227 Score = 35.0 bits (80), Expect = 3e-04 Identities = 10/80 (12%), Positives = 26/80 (32%) Query: 230 EVEDEILSEIEKRDTDIMQKEQELEQKRRELEQSKQAIEQSKQVIEQSKLELEQSKQELE 289 ++I+ + + E + + LE + I+ + E + E Sbjct: 239 NFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKA 298 Query: 290 QSKQELEQKDKMLQEMVRML 309 + + + + Q + R L Sbjct: 299 DLEHQSQVLNANRQSLRRDL 318 Score = 33.5 bits (76), Expect = 0.001 Identities = 12/103 (11%), Positives = 35/103 (33%), Gaps = 3/103 (2%) Query: 233 DEILSEIEKRDTDIMQKEQELEQKRR---ELEQSKQAIEQSKQVIEQSKLELEQSKQELE 289 + ++ ++ +++L + + E Q +E K +E++ Sbjct: 81 KALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADS 140 Query: 290 QSKQELEQKDKMLQEMVRMLTQAGISPEDIAQKLSLSLQDVKN 332 + LE + L L +A + + S ++ ++ Sbjct: 141 AKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEA 183 Score = 33.5 bits (76), Expect = 0.001 Identities = 12/77 (15%), Positives = 26/77 (33%) Query: 230 EVEDEILSEIEKRDTDIMQKEQELEQKRRELEQSKQAIEQSKQVIEQSKLELEQSKQELE 289 E + + + ++ L ++ +LE++ + LE K LE Sbjct: 200 EGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALE 259 Query: 290 QSKQELEQKDKMLQEMV 306 + ELE+ + Sbjct: 260 ARQAELEKALEGAMNFS 276 Score = 30.4 bits (68), Expect = 0.012 Identities = 14/83 (16%), Positives = 35/83 (42%), Gaps = 3/83 (3%) Query: 225 VRRSMEVEDEILSEIEKRDTDIMQKEQELEQKRRE---LEQSKQAIEQSKQVIEQSKLEL 281 + +M ++I+ + + E E + L ++Q++ + ++K +L Sbjct: 269 LEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQL 328 Query: 282 EQSKQELEQSKQELEQKDKMLQE 304 E Q+LE+ + E + L+ Sbjct: 329 EAEHQKLEEQNKISEASRQSLRR 351 Score = 29.3 bits (65), Expect = 0.026 Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 4/67 (5%) Query: 232 EDEILSEIEKRDTDIMQKEQELEQKRRELEQSKQAIEQSKQVIEQSKLELEQSKQELEQS 291 + + +E + + RR+L+ S++A +Q +E +LE+ + E S Sbjct: 290 KAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQ----LEAEHQKLEEQNKISEAS 345 Query: 292 KQELEQK 298 +Q L + Sbjct: 346 RQSLRRD 352
>PF05272#Virulence-associated E family protein Length = 892 Score = 139 bits (352), Expect = 2e-36 Identities = 56/282 (19%), Positives = 99/282 (35%), Gaps = 24/282 (8%) Query: 366 YNPFKSYFDNLPRWDGT----TDPIGRLAATIDTTRP---EYWEKCLKKWLVAVVACAID 418 +PF+ + WD + L T D +P Y + K L+ VA ++ Sbjct: 532 VHPFRDWVKAQQ-WDEVPRLEKWLVHVLGKTPDDYKPRRLRYLQLVGKYILMGHVARVME 590 Query: 419 ERQTNHTVLLLSGAQGLGKTTWLRNLVPPVLRNYVFSGNLDPTAKDSSLLMSDCFLIILD 478 ++L G G+GK+T + LV + + T KDS ++ L Sbjct: 591 PGCKFDYSVVLEGTGGIGKSTLINTLVGLDF--FSDTHFDIGTGKDSYEQIAGIVAYELS 648 Query: 479 ELSGQSRVELNQLKALITKDSILERRPYARNAETFVRRASFAATVNDSQILTDRTGSRRF 538 E++ R + +KA + R Y R + R+ T N Q L D TG+RRF Sbjct: 649 EMTAFRRADAEAVKAFFSSRKDRYRGAYGRYVQDHPRQVVIWCTTNKRQYLFDITGNRRF 708 Query: 539 LCFETLRIDYTSEIDHAA-----IYAQALALYKQNFRYWFAENDITEINDNNEPFQQSCP 593 + + + + ++A+AL LY RY+ D F+ Sbjct: 709 W---PVLVPGRANLVWLQKFRGQLFAEALHLYLAGERYF------PSPEDEEIYFRPEQE 759 Query: 594 EAELFYTYFRKPVRFELPLLLSASEILSKIAERTRYSMTTMS 635 + + A+E ++ + T++ Sbjct: 760 LRLVETGVQGRLWALLTREGAPAAEGAAQKGYSVNTTFVTIA 801
>FLGFLGJ#Flagellar protein FlgJ signature. Length = 313 Score = 47.8 bits (113), Expect = 3e-09 Identities = 40/158 (25%), Positives = 65/158 (41%), Gaps = 22/158 (13%) Query: 5 EFVKRFLPEAEAAEKRFHLNPVVMLAQAAIESGWNESNL----AKLHRNLFGITGYGPSN 60 F+ + A+ A ++ + ++LAQAA+ESGW + + + NLFG+ G Sbjct: 151 AFLAQLSLPAQLASQQSGVPHHLILAQAALESGWGQRQIRRENGEPSYNLFGVKASGN-- 208 Query: 61 EFWHGCRVELVP----RGLP------FRKYSDTQSSFLDYARLIVTAYPAAAAVSYYPSA 110 W G E+ G FR YS + DY L+ T P AAV+ SA Sbjct: 209 --WKGPVTEITTTEYENGEAKKVKAKFRVYSSYLEALSDYVGLL-TRNPRYAAVTTAASA 265 Query: 111 --FAHEIAYSKYISEVN-GDNRTAYCHLLDRLSVAIGK 145 A + + Y ++ + T + +S + K Sbjct: 266 EQGAQALQDAGYATDPHYARKLTNMIQQMKSISDKVSK 303
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 32.4 bits (74), Expect = 1e-04 Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 2/91 (2%) Query: 33 MCDLAGLCEIIADRSAATAGDVKLVLDGLLFVVKQKLQDGQTIQLGDLGYFQAVL--GSK 90 M + L +A+ + T D +D + V L G+ +QL G F+ K Sbjct: 1 MANKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARK 60 Query: 91 GSPTKKEFTTDLVRRPRVVFRPGKTLLELAK 121 G + + F+ GK L + K Sbjct: 61 GRNPQTGEEIKIKASKVPAFKAGKALKDAVK 91
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 31.0 bits (70), Expect = 0.035 Identities = 25/204 (12%), Positives = 65/204 (31%), Gaps = 28/204 (13%) Query: 11 LGLFLAMGVISTSVYANTALQSVKVTVNHKNAPISKVLDDIEQQTGYSILVRNNDINIKQ 70 L L + ++ A + + K I + ++ + + ++++ D +++ Sbjct: 12 LTLLIFAALLFRPAAAEEF------SASFKGTDIQEFINTVSKNLNKTVII---DPSVRG 62 Query: 71 KVTVNVTGSLNTVLADVFEGMEVKYNV--------ENKTISIYKEKTPSFVASSVNQDKK 122 +TV LN ++ +V N + + + K A V D Sbjct: 63 TITVRSYDMLN--EEQYYQFFLSVLDVYGFAVINMNNGVLKVVRSKDAKTAAVPVASDAA 120 Query: 123 TVTGTIVDQNGEPIIGANVS---------IPGTTTGTISDVDGRFSIEVPENAQLQISFI 173 G V P+ G++ + + + A + + Sbjct: 121 PGIGDEVVTRVVPLTNVAARDLAPLLRQLNDNAGVGSVVHYEPSNVLLMTGRAAVIKRLL 180 Query: 174 GYLSQVISVENKTVINVKLQEDTQ 197 + +V + +++V+ V L + Sbjct: 181 TIVERVDNAGDRSVVTVPLSWASA 204
>PF03309#Bvg accessory factor Length = 271 Score = 28.6 bits (64), Expect = 0.028 Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 3/39 (7%) Query: 9 IDIGGTNTVFGVVDA---RGTILYSGSIKTGKYTDIEEY 44 ID+ T+TV G++ ++ I+T +E Sbjct: 5 IDVRNTHTVVGLISGSGDHAKVVQQWRIRTEPEVTADEL 43
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 33.7 bits (77), Expect = 0.002 Identities = 12/75 (16%), Positives = 30/75 (40%), Gaps = 5/75 (6%) Query: 509 YNLGYCYFKLKEYGEAQNRFRQYINLENNQQAPALADAYNRIGDCLYQNRQFAQAEENYT 568 Y+L + ++ +Y +A F+ L+ + + +G C Q+ A +Y+ Sbjct: 40 YSLAFNQYQSGKYEDAHKVFQALCVLD-----HYDSRFFLGLGACRQAMGQYDLAIHSYS 94 Query: 569 HAAQLQPSAGDYSVY 583 + A + + + Sbjct: 95 YGAIMDIKEPRFPFH 109 Score = 33.0 bits (75), Expect = 0.003 Identities = 30/141 (21%), Positives = 48/141 (34%), Gaps = 12/141 (8%) Query: 403 TKNYQAALNSINKINHPSTKILEAKQDILFQLGTQAFTNM---KLDEAVDLFSKAINLGS 459 T+ YQ A+ S K + E D L QL + AF K ++A +F L Sbjct: 8 TQEYQLAMESFLKGGGTIAMLNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDH 67 Query: 460 YNMESRNDAYFWRGESYYRKGDYRQAISDYRTYLNNTRQRNTDMYALAHYNLGYCYFKLK 519 Y+ + G G Y AI Y +Y + ++ C + Sbjct: 68 YDS----RFFLGLGACRQAMGQYDLAIHSY-SYGAIMDIKEPR----FPFHAAECLLQKG 118 Query: 520 EYGEAQNRFRQYINLENNQQA 540 E EA++ L ++ Sbjct: 119 ELAEAESGLFLAQELIADKTE 139
>INTIMIN#Intimin signature. Length = 939 Score = 32.7 bits (74), Expect = 0.004 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 7/60 (11%) Query: 60 PSNAAVTSVTWSTSDENVATVD--KGVVTAVAEGAATITVKTDDGGFTATCSVTVTKDAP 117 ++ TW +++ +A+VD G VT +G TI+V + D T T P Sbjct: 785 KASGGNGKYTWRSANPAIASVDASSGQVTLKEKGTTTISVISSDNQT-----ATYTIATP 839
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 319 bits (820), Expect = e-102 Identities = 140/689 (20%), Positives = 273/689 (39%), Gaps = 80/689 (11%) Query: 9 IKNISILGSSGSGKTTLAEAMLYEGGVIKRRGSVDGGNTVSDYFPVEKEYGYSVFSTVFS 68 I NI +L +GKTTL E++LY G I GSVD G T +D +E++ G ++ + + S Sbjct: 3 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITS 62 Query: 69 VEWQDRKLNFIDCPGSDDFIGGAVSALNVTDTALMVLNAQYGVEVGTMNQFRYTEQFHKP 128 +W++ K+N ID PG DF+ +L+V D A+++++A+ GV+ T F + P Sbjct: 63 FQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIP 122 Query: 129 VIFVVNQLDNDKADYDGTIAQLRDQFGSKIVPIQYPVSTGASFNAVVDVLKMKMYRWKPE 188 IF +N++D + D ++++ ++IV Q K+++Y Sbjct: 123 TIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQ----------------KVELY----- 161 Query: 189 GGVPDVLEIPAEEMDKAMELHKALVEAAAENDDMLMEKFFEEGTLSEDDMRAGIRAGLVI 248 P++ E ++ + E +D L+EK+ +L ++ Sbjct: 162 ---PNMCVTNFTESEQ--------WDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFHN 210 Query: 249 RGMFPVFCVCAGRDMCVRRTLEFLGNVVPCTDKMPRPVTTEGVEVTPVADGPTSLFFFKT 308 +FPV+ A ++ + +E + T+K FK Sbjct: 211 CSLFPVYHGSAKNNIGIDNLIEVI------TNKFYSSTHRGQ--------SELCGKVFKI 256 Query: 309 TIEPHIGQVSYFKVISGKVKAGDDLLNADRGSKERIAQLFSVAGQTRNEVSEMVAGDIGA 368 +++Y ++ SG + D + +++ K +I ++++ ++ + +G+I Sbjct: 257 EYSEKRQRLAYIRLYSGVLHLRDSVRISEKE-KIKITEMYTSINGELCKIDKAYSGEIVI 315 Query: 369 TVKLKDVRRGNTLNGKGCDYKFDFIKYPDPKYRRAVKPVNESDAEKMMEILNRMREEDPT 428 + ++ + L + + I+ P P + V+P E +++ L + + DP Sbjct: 316 LQN-EFLKLNSVLGDTKLLPQRERIENPLPLLQTTVEPSKPQQREMLLDALLEISDSDPL 374 Query: 429 WVIEQSKELKQTIVSGQGEFHLRTLKWRIENNDKLPIEYLEPKIPYRETITKAARADYRH 488 + I+S G+ + ++ + IE EP + Y E K A Sbjct: 375 LRYYVDSATHEIILSFLGKVQMEVTCALLQEKYHVEIEIKEPTVIYMERPLKKAEYTI-- 432 Query: 489 KKQSGGAGQFGEVHLIVEPYYEGMPAPDMYRFGGQEYKISVRDTQTIDLDWGGKLVFINS 548 + + + L V P L G + + +S Sbjct: 433 HIEVPPNPFWASIGLSVSP-----------------------------LPLGSGMQYESS 463 Query: 549 IVGGAIDARFLPAILKGIMARMEQGPLTGSYARDVRIIVYDGKMHPVDSNEISFMLAGRN 608 + G ++ F A+++GI EQG L G D +I G + S F + Sbjct: 464 VSLGYLNQSFQNAVMEGIRYGCEQG-LYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPI 522 Query: 609 AFSTAFKEAGPKILEPVYDVEVSVPGDYLGDVMSDLQGRRAIIMGMNSEKGFEKLLAKVP 668 K+AG ++LEP ++ P +YL +D A I+ + L ++P Sbjct: 523 VLEQVLKKAGTELLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQLKNNEVILSGEIP 582 Query: 669 LKEMSNYSTSLSSITGGRASFTMKFSAYE 697 + + Y + L+ T GR+ + Y Sbjct: 583 ARCIQEYRSDLTFFTNGRSVCLTELKGYH 611
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 46.9 bits (111), Expect = 1e-07 Identities = 20/64 (31%), Positives = 29/64 (45%) Query: 641 VAFSATTHTTGGNSGSPVLNANGELIGINFDRNWEGVGGDIQYLPDYQRSIIVDIRYVLF 700 A TTGGNSGSPV N E+IGI++ G + + + + +I + F Sbjct: 224 EAMQYDLSTTGGNSGSPVFNEKNEVIGIHWGGVPNEFNGAVFINENVRNFLKQNIEDIHF 283 Query: 701 LIDK 704 D Sbjct: 284 ANDD 287
>FIMREGULATRY#Escherichia coli: P pili regulatory PapB protein signature. Length = 104 Score = 30.3 bits (68), Expect = 0.001 Identities = 11/34 (32%), Positives = 20/34 (58%) Query: 7 RKFIVKGDFSKEVCDSQRIVQGYICSQPGRTVRI 40 + ++V G KEVC+ ++ GY + GR +R+ Sbjct: 52 KDYLVGGHSRKEVCEKYQMNNGYFSTTLGRLIRL 85
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 98.9 bits (246), Expect = 2e-24 Identities = 42/95 (44%), Positives = 64/95 (67%), Gaps = 2/95 (2%) Query: 521 VVIENIFYDFDKATLRPESQKALDEMIKML--NDNPNVTIELGAHTDRKGSDQYNERLAQ 578 + ++ ++F+KATL+PE Q ALD++ L D + ++ + +TDR GSD YN+ L++ Sbjct: 216 TLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSE 275 Query: 579 RRAQSVVDYLIAGGIEKERLEAKGYGESVPKVINK 613 RRAQSVVDYLI+ GI +++ A+G GES P N Sbjct: 276 RRAQSVVDYLISKGIPADKISARGMGESNPVTGNT 310
>OMPTIN#Omptin serine protease signature. Length = 317 Score = 28.4 bits (63), Expect = 0.044 Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 7/95 (7%) Query: 233 STLIPVGISPVDGTPLDLRTPVAIGKQINDPFQQLQFGRGYDLN---WVLNTNGDKNVLA 289 +TL G + VD +D P + P QL + +DLN W+LN + L Sbjct: 92 TTLGSRGGNMVDQDWMDSSNPGTWTDESRHPDTQLNYANEFDLNIKGWLLNEPNYRLGLM 151 Query: 290 A----KAYSPTSGIALEVYTNEPGIQFYTGNFMDG 320 A YS T+ +Y++E G + G+F +G Sbjct: 152 AGYQESRYSFTARGGSYIYSSEEGFRDDIGSFPNG 186
>PF07328#T-DNA border endonuclease VirD1 Length = 144 Score = 29.3 bits (65), Expect = 0.005 Identities = 9/35 (25%), Positives = 12/35 (34%), Gaps = 10/35 (28%) Query: 143 NELAAAYNE--------LRDEVSRKKFGKAFADLD 169 N++A A N E RK G + L Sbjct: 86 NQIAKAANRTHDPAYHSFMAE--RKVLGLELSKLS 118
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 27.1 bits (60), Expect = 0.037 Identities = 11/67 (16%), Positives = 26/67 (38%), Gaps = 1/67 (1%) Query: 76 RSKMGSETRLQLNDQFAEVSEIETYIAQEKSSMKEEDQPFMTVSIKADKETKMGV-ITDV 134 ++ +G + Q +Q ++ ED + + +K +GV ++D+ Sbjct: 686 QAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDI 745 Query: 135 KQALREA 141 Q + A Sbjct: 746 NQTISTA 752
>SECYTRNLCASE#Preprotein translocase SecY subunit signature. Length = 437 Score = 27.8 bits (62), Expect = 0.017 Identities = 8/30 (26%), Positives = 16/30 (53%), Gaps = 4/30 (13%) Query: 120 EQLRN----IYSIRKNKATNKYLKYIIHTI 145 + ++ I IR + T +YL Y+++ I Sbjct: 345 DNMKKYGGFIPGIRAGRPTAEYLSYVLNRI 374
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 26.4 bits (58), Expect = 0.023 Identities = 14/55 (25%), Positives = 23/55 (41%) Query: 36 IGRLAVSLEYAQQGLGKDIIRFIKYLFTHGNRTGCRFITVDAYEDAIVFYQKSGF 90 I +AV+ +Y ++G+G ++ + G T D A FY K F Sbjct: 92 IEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHF 146
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 28.9 bits (65), Expect = 0.002 Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 10/89 (11%) Query: 39 ICELIADRSTASDGDVALVVLGLIRAMEEALLRNEVVQLGRLGNFRLSIGSS------GT 92 + +A+ + + D A V + A+ L + E VQL GNF + ++ T Sbjct: 7 LIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGRNPQT 66 Query: 93 VEEKDFQANMIRKPKIIFTPGDKLRAMIE 121 EE +A+ + P F G L+ ++ Sbjct: 67 GEEIKIKAS--KVPA--FKAGKALKDAVK 91
>FLGFLGJ#Flagellar protein FlgJ signature. Length = 313 Score = 48.9 bits (116), Expect = 1e-09 Identities = 35/120 (29%), Positives = 52/120 (43%), Gaps = 17/120 (14%) Query: 29 VILAQAAFESGWG--MSKLATG--SNNYFGLTAYGCSNQYWHGSKTTVNTGSY------- 77 +ILAQAA ESGWG + G S N FG+ A G W G T + T Y Sbjct: 173 LILAQAALESGWGQRQIRRENGEPSYNLFGVKASGN----WKGPVTEITTTEYENGEAKK 228 Query: 78 -SLDFRRYDTRENSFLDFARLIRNNYR-TAWQASNNPEAYAREIAYSPYISELNGDDRET 135 FR Y + + D+ L+ N R A + + E A+ + + Y ++ + + T Sbjct: 229 VKAKFRVYSSYLEALSDYVGLLTRNPRYAAVTTAASAEQGAQALQDAGYATDPHYARKLT 288
>BONTOXILYSIN#Bontoxilysin signature. Length = 1196 Score = 31.0 bits (70), Expect = 0.022 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 6/63 (9%) Query: 578 YVNTTDPENISYGNPNLDSEKSNNVNFNYSMFSQK--ININASASYTFVNNAIERYTFVN 635 V T +I+Y L ++ +NN NF S K + + S Y+F++N + + Sbjct: 492 EVTTHTALSINY----LQAQITNNENFTLSSDFSKVVSSKDKSLVYSFLDNLMSYLETIK 547 Query: 636 NDG 638 NDG Sbjct: 548 NDG 550
>FLGFLIJ#Flagellar FliJ protein signature. Length = 147 Score = 33.2 bits (75), Expect = 3e-04 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 18/52 (34%) Query: 138 KKEEKTAWEKLKDRYEGAAFIEENNCPPGSSFTYAQAAAIMARMDKQKDDEF 189 KK+ AW+ L++R AA + EN R+D++K DEF Sbjct: 104 KKQRLQAWQTLQERQSTAALLAEN------------------RLDQKKMDEF 137
>MICOLLPTASE#Microbial collagenase metalloprotease (M9) signature. Length = 1104 Score = 28.1 bits (62), Expect = 0.042 Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 6/93 (6%) Query: 148 LSGDGIIHLKTDSNFMYTYTCEMVK--ANNYPVLFSN-NDLYHSGLVDDILSIKTYYEQQ 204 +S G++H K S Y Y + NN +F+ + + V K Y Sbjct: 567 MSLYGVLHAKYGSWDFYNYGFALSNYMYNNNMGMFNKMTNYIKNNDVS---GYKDYIASM 623 Query: 205 WLDRGLNIKYIKFVCEERDELVEPDVEIELDPY 237 D GLN KY ++ + + DV + D Y Sbjct: 624 SSDYGLNDKYQDYMDSLLNNIDNLDVPLVSDEY 656
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 31.9 bits (72), Expect = 0.003 Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 1/61 (1%) Query: 70 KEIEPVLSDIVLPAEKVESPSAPVVPVEPIKPQPVVK-KLAATVKTAEPQLPDLSQVVSE 128 ++EP + P VE P EP K PVV K K + + Q + Sbjct: 58 ADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRD 117 Query: 129 V 129 V Sbjct: 118 V 118
>BINARYTOXINB#Binary toxin B family signature. Length = 764 Score = 31.2 bits (70), Expect = 0.001 Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 5/74 (6%) Query: 58 GESTAHCVKTTTTVTTTTSGNSSSVSGGVSAGCGGISGGVSGSTGSSSGNTTTTTVTTTE 117 ++T +T + T+T+ ++S V G + GS S + + +T Sbjct: 308 TQNTDSQTRTISKNTSTSRTHTSEVHGNA-----EVHASFFDIGGSVSAGFSNSNSSTVA 362 Query: 118 EYDAKKLYCEDATN 131 + L E Sbjct: 363 IDHSLSLAGERTWA 376 Score = 28.9 bits (64), Expect = 0.007 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 5/59 (8%) Query: 52 QSYGRQGESTAHCVKTTTTVTTTTSGNSSSVSGGVSAGCGGISGGVSGSTGSSSGNTTT 110 Q+ Q + + T+ T T+ GN+ V A I G VS +S+ +T Sbjct: 309 QNTDSQTRTISKNTSTSRTHTSEVHGNA-----EVHASFFDIGGSVSAGFSNSNSSTVA 362
>PF06580#Sensor histidine kinase Length = 349 Score = 33.7 bits (77), Expect = 0.004 Identities = 14/79 (17%), Positives = 35/79 (44%), Gaps = 8/79 (10%) Query: 26 RVSINKKNVQLETVLNEIEHQTDYLFI----YNNQVNVNKKVSLKAKNQPVSK-VLEELL 80 R S+ N + ++ +E+ YL + + +++ +++ + V +++ L+ Sbjct: 205 RYSLRYSNARQVSLADELTVVDSYLQLASIQFEDRLQFENQINPAIMDVQVPPMLVQTLV 264 Query: 81 ANS---GITYSVEGNHIVL 96 N GI +G I+L Sbjct: 265 ENGIKHGIAQLPQGGKILL 283
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 39.9 bits (93), Expect = 7e-07 Identities = 23/105 (21%), Positives = 45/105 (42%), Gaps = 4/105 (3%) Query: 28 SYLKTSD--CFVALCEGQAVGVIVVQKQSVNGAVVLNLAVGESFQRRGIARRLLRFVFDE 85 SY++ F+ E +G I ++ A++ ++AV + ++++G+ LL E Sbjct: 58 SYVEEEGKAAFLYYLENNCIGRIKIRSNWNGYALIEDIAVAKDYRKKGVGTALLHKAI-E 116 Query: 86 WARSNRIALLKVCTGTSAPGPMMLYQQEGFDLKELDRDYFVRNYP 130 WA+ N L + T Y + F + +D N+P Sbjct: 117 WAKENHFCGLMLETQDINISACHFYAKHHFIIGAVDT-MLYSNFP 160
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 35.3 bits (81), Expect = 4e-04 Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 7/73 (9%) Query: 198 FQVGKSQILPDFRNNASELDKINSTIRSVTSDKNITPKGIILKGYASPEGSYASNDRLSD 257 F K+ + P+ + LD++ S + ++ + +++ GY GS A N LS+ Sbjct: 223 FNFNKATLKPEGQAA---LDQLYSQLSNL----DPKDGSVVVLGYTDRIGSDAYNQGLSE 275 Query: 258 NRVKALRDYIRSK 270 R +++ DY+ SK Sbjct: 276 RRAQSVVDYLISK 288
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 28.5 bits (64), Expect = 0.004 Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 6/85 (7%) Query: 35 SALCDQVTKVGMAPRGVVKMVTDGLIDAIMWNLENHLSVKLGDFGTF----RPAFGSKSQ 90 L +V + + D + A+ L V+L FG F R A ++ Sbjct: 5 QDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGRNP 64 Query: 91 DTEEAVNAEVLRHRKIIFTPGAYFK 115 T E + ++ + F G K Sbjct: 65 QTGEEI--KIKASKVPAFKAGKALK 87
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 25.4 bits (56), Expect = 0.042 Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 6/68 (8%) Query: 33 NYPELYEQAAKRCMGVSNSMIRMVIDDLIEVLEWNLLNHMSVKLDDFGTF----RPG-LG 87 N +L + A+ ++ +D + + L V+L FG F R G Sbjct: 3 NKQDLIAKVAEA-TELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKG 61 Query: 88 CKPQSEEK 95 PQ+ E+ Sbjct: 62 RNPQTGEE 69
>FIMBRILLIN#Porphyromonas gingivalis: fimbrillin protein signature. Length = 348 Score = 48.1 bits (114), Expect = 2e-08 Identities = 66/288 (22%), Positives = 116/288 (40%), Gaps = 37/288 (12%) Query: 63 GEAYINNITAFVFSEDGSQLLSSAPFYQETTPADGELTIPNIPARAAKARIVLVGNANGA 122 E+ + +T V++ + + + SA + + +I A + +V++ N Sbjct: 15 DESKVAKLTVMVYNGEQQEAIKSA---------ENATKVEDIKCSAGQRTLVVMANTGEM 65 Query: 123 LSNITSYAGLEAALCQLSS--QEQDNLTMSSRVIETEESLVAGDENYIGYESMGKNNING 180 + A ++A +L++ QE L M++ +E +LVAG+ NY GY+ N Sbjct: 66 KLAGKTLAEVKALTTELTAENQEAAGLIMTAEPVEV--TLVAGN-NYYGYDGSQGGNQIS 122 Query: 181 ISTPLELTRLAARLDVVGIKTNFTRPELLGRIVTIESITVDNQKTASRFF-------SHD 233 TPLE+ R+ AR+ IK + + E+I K S F Sbjct: 123 QDTPLEIKRVHARMAFTEIKVQMSPSYVNKYNFAPENIYALVAKKESNLFGASLANSDDA 182 Query: 234 YWGAVVAAGNLGTSPS--TPMDLVVDNNTSLSEIAYRT-YVMENDGSE----QPTELLIK 286 Y + N SP+ T +D + + T S A + YV+E+ ++ +PT L +K Sbjct: 183 YLTGSLTNFNGAYSPANYTHVDWLGRDYTEPSNNAPQGFYVLESTYAQNAGLRPTILCVK 242 Query: 287 ATISAKDPYQARTREFRAVINEKGLSAYGH---------NFVKRNYVY 325 ++ D + E A N + A + NF NY Y Sbjct: 243 GKLTKHDGTPLSSEEMTAAFNAGWIVADNNPTTYYPVLVNFNSNNYTY 290
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 29.4 bits (65), Expect = 0.013 Identities = 11/28 (39%), Positives = 17/28 (60%) Query: 240 KTGWIEGKAEGKAEGLAEGKAEGLAEGQ 267 + G EG+ +G +G EG A+GL +G Sbjct: 57 QAGIAEGRQQGHKQGYQEGLAQGLEQGL 84 Score = 28.6 bits (63), Expect = 0.025 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%) Query: 217 LNEKDRRQYYADMEALRYQRSVIKTGWIEGKAEGKAEGLAEGKAEGLAEG 266 + E+ + L+ Q + G+ G AEG+ +G +G EGLA+G Sbjct: 32 IIEEAEPSLEQQLAQLQMQAH--EQGYQAGIAEGRQQGHKQGYQEGLAQG 79
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 89.8 bits (223), Expect = 2e-27 Identities = 30/88 (34%), Positives = 54/88 (61%) Query: 2 NRAELIEALAEKSGLSKQKAKKVLESYMEIVTEKMSQNEEIALIGFGTLIPRPQSSRMAR 61 N+ +LI +AE + L+K+ + +++ V+ +++ E++ LIGFG R +++R R Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGR 62 Query: 62 NPKTGTPVRIKARTTVKFKPGKFLLEAI 89 NP+TG ++IKA FK GK L +A+ Sbjct: 63 NPQTGEEIKIKASKVPAFKAGKALKDAV 90
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 89.1 bits (221), Expect = 8e-21 Identities = 36/130 (27%), Positives = 62/130 (47%), Gaps = 4/130 (3%) Query: 434 LTGKKILVIDDSDQIRWFLKHVFTKE-YEILEARNGEEGIQVAFANNPDLILCDVMMPVK 492 +TG ILV DD IR L ++ Y++ N + A + DL++ DV+MP + Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 493 DGFQTCKELKADPRTSQTPVVMLTAKVESEDIIVGLEAGADDYITKPFDV-EILRSKLNN 551 + F +K PV++++A+ I E GA DY+ KPFD+ E++ Sbjct: 61 NAFDLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRA 118 Query: 552 LVKRREQLKQ 561 L + + + + Sbjct: 119 LAEPKRRPSK 128
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 32.5 bits (74), Expect = 0.008 Identities = 9/30 (30%), Positives = 17/30 (56%) Query: 747 MVDFAYKAHITWWIFAIAILLTGGISFLTL 776 M +F + I W+ AI +++ G ++ L L Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQL 30
>PF06580#Sensor histidine kinase Length = 349 Score = 29.8 bits (67), Expect = 0.038 Identities = 18/102 (17%), Positives = 37/102 (36%), Gaps = 7/102 (6%) Query: 356 WNRYGMYEGVSRHIDQSALVFNAITAILASTLLFWIIT----YLPIRRILCNPGTQSVAL 411 W Y + + S + + I I S L+ ++T R+ + L Sbjct: 20 WGVYTLTGFGFASLYGSPKLHSMIFNIAIS-LMGLVLTHAYRSFIKRQGWLKLNMGQIIL 78 Query: 412 KRGLIAGQIFIGSLFFITSIILFMQLHFILNKDKGVEYENVL 453 + ++ + IG ++F+ + ++ L FI K L Sbjct: 79 R--VLPACVVIGMVWFVANTSIWRLLAFINTKPVAFTLPLAL 118
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 36.5 bits (84), Expect = 3e-04 Identities = 14/27 (51%), Positives = 18/27 (66%) Query: 409 TEGGSSGSPLFNSKGLIIGTLSGGNSS 435 T GG+SGSP+FN K +IG GG + Sbjct: 232 TTGGNSGSPVFNEKNEVIGIHWGGVPN 258
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 104 bits (262), Expect = 1e-27 Identities = 38/163 (23%), Positives = 65/163 (39%), Gaps = 7/163 (4%) Query: 16 MRNGKIIVVDDNEAVLKTLRMILSREFKTVVCASVPTLLPALLREDDVDVVLLDMNFGTG 75 M I+V DD+ A+ L LSR V S L + D D+V+ D+ Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMP-- 58 Query: 76 KQSGGEGLFWLDRIRER-PDPPEVVLITAFGDIELAVSSLKKGAVDFIVKPWDNDKLLST 134 L RI++ PD P V++++A A+ + +KGA D++ KP+D +L+ Sbjct: 59 ---DENAFDLLPRIKKARPDLP-VLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGI 114 Query: 135 VIAAWESRSGRKQNSSRKESEFLSEETDSVVTLLVNSLLRKYA 177 + A R + + S + +L + Sbjct: 115 IGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLM 157 Score = 73.7 bits (181), Expect = 7e-17 Identities = 27/160 (16%), Positives = 49/160 (30%), Gaps = 40/160 (25%) Query: 165 VTLLVNSLLRKYATAYGKPFPGITPDALHKLSDRMLNGDLSLLQQTIERAVLLSNLSVLD 224 + LV +++ G +AL + G++ L+ + R L V+ Sbjct: 317 IPDLVRHFVQQAE-KEGLDVKRFDQEALELMKAHPWPGNVRELENLVRRLTALYPQDVIT 375 Query: 225 SDDF---------------------------------------YMDAPPVTVSHPVTLEE 245 + + DA P + + L E Sbjct: 376 REIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFGDALPPSGLYDRVLAE 435 Query: 246 MEKQFISEVLAEKKGNLTLCAQQLNISRQTLYNKMKKYNL 285 ME I L +GN A L ++R TL K+++ + Sbjct: 436 MEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGV 475
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 35.5 bits (81), Expect = 1e-04 Identities = 17/40 (42%), Positives = 26/40 (65%) Query: 234 ARREGLAEGRAEGRAEGIVKGKAEGIAEGRAEGLAEGEAK 273 A +G G AEGR +G +G EG+A+G +GLAE +++ Sbjct: 51 AHEQGYQAGIAEGRQQGHKQGYQEGLAQGLEQGLAEAKSQ 90 Score = 32.8 bits (74), Expect = 0.001 Identities = 15/35 (42%), Positives = 21/35 (60%) Query: 241 EGRAEGRAEGIVKGKAEGIAEGRAEGLAEGEAKGK 275 +G G AEG +G +G EG A+GL +G A+ K Sbjct: 54 QGYQAGIAEGRQQGHKQGYQEGLAQGLEQGLAEAK 88 Score = 30.5 bits (68), Expect = 0.006 Identities = 17/72 (23%), Positives = 38/72 (52%), Gaps = 6/72 (8%) Query: 195 PEISKALTVLEESAFT-DEELAGYEHFWDGISVEKTLYNSARREGLAEGRAEGRAEGIVK 253 P + T++EE+ + +++LA + + + Y + EG +G +G EG+ + Sbjct: 24 PIVEPEETIIEEAEPSLEQQLAQLQ-----MQAHEQGYQAGIAEGRQQGHKQGYQEGLAQ 78 Query: 254 GKAEGIAEGRAE 265 G +G+AE +++ Sbjct: 79 GLEQGLAEAKSQ 90 Score = 28.6 bits (63), Expect = 0.027 Identities = 12/34 (35%), Positives = 20/34 (58%) Query: 241 EGRAEGRAEGIVKGKAEGIAEGRAEGLAEGEAKG 274 + +G GI +G+ +G +G EGLA+G +G Sbjct: 50 QAHEQGYQAGIAEGRQQGHKQGYQEGLAQGLEQG 83
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 33.0 bits (75), Expect = 0.009 Identities = 28/131 (21%), Positives = 45/131 (34%), Gaps = 17/131 (12%) Query: 28 LFLGTALNLSAGTIFEQKFTLNLSFKNTKIEQVLDAISKQSGIKIAYSNREVTTNKNVSV 87 L L L ++F+ + FK T I++ ++ +SK + V V Sbjct: 12 LTLLIFAALLFRPAAAEEFSAS--FKGTDIQEFINTVSKNLNKTVIIDPS-VRGTITVRS 68 Query: 88 NIQTS--DIEEALLAVLGDGYTFKQIDDYIAIAKNENTQKANTLTVVQQKKQSVSGLLTD 145 + + L+VL D Y F I L VV+ K + + Sbjct: 69 YDMLNEEQYYQFFLSVL-DVYGFAVI-----------NMNNGVLKVVRSKDAKTAAVPVA 116 Query: 146 ADGNPVIGATV 156 +D P IG V Sbjct: 117 SDAAPGIGDEV 127
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 33.5 bits (76), Expect = 0.002 Identities = 32/183 (17%), Positives = 59/183 (32%), Gaps = 17/183 (9%) Query: 84 PPVASVQDEEKIYQETQENIPEKTKPS-VTESVPAKKLIA-AARPDKPLQITGNEVPETE 141 P S E QE+ + TE+ + +A A+ + NEV ++ Sbjct: 1030 PATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSG 1089 Query: 142 VVEEIQEQEKTVLQPDIEKSTKETKEQPEKKQKQQDLYSYESKKYNFSSAGKKKTAEGGW 201 E + Q + + ++ K + EK Q+ + S S K S + AE Sbjct: 1090 S-ETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSET-VQPQAEPAR 1147 Query: 202 SINAGFGTGGHVSLGLGNGDLVMDMDNPSSSITPGNPGEVSPPPVKPPLFENSNVLPPEQ 261 + N N ++ P + + V+ P+ E++ V Sbjct: 1148 ENDPTV-----------NIKEPQSQTNTTADT--EQPAKETSSNVEQPVTESTTVNTGNS 1194 Query: 262 YTE 264 E Sbjct: 1195 VVE 1197
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 123 bits (310), Expect = 2e-36 Identities = 70/257 (27%), Positives = 114/257 (44%), Gaps = 21/257 (8%) Query: 1 MDGKRVFVTGGAKGIGAAIVTAFCNVGARVAFCDTDEKAASRLCD---LLPTFVQFFQAD 57 ++GK F+TG A+GIG A+ + GA +A D + + ++ + F AD Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 58 ASDPEALQKVINRLFNMWGDIDVIVNNVGISEFSPLVETSIEQFDKVLSTNLRPVFITSR 117 D A+ ++ R+ G ID++VN G+ + S E+++ S N VF SR Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 118 ALAIHRNNEEGKQRYGRIINIASTRYLQSEPGSECYAASKGGIVSLTHALALSFSDYNIT 177 +++ +R G I+ + S YA+SK V T L L ++YNI Sbjct: 126 SVS----KYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIR 181 Query: 178 VNSISPGWIQNEDYRLLKRSDHNQH--------------PSGRVGRPSDIASACLFLAAP 223 N +SPG + + L ++ P ++ +PSDIA A LFL + Sbjct: 182 CNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSG 241 Query: 224 ENDFINGQNIVIDGGMT 240 + I N+ +DGG T Sbjct: 242 QAGHITMHNLCVDGGAT 258
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 29.2 bits (65), Expect = 0.023 Identities = 11/26 (42%), Positives = 17/26 (65%) Query: 106 PEPKPDPDPDPEPIPDQTAQSIYVQP 131 PEP +P+P+PEPIP+ ++ V Sbjct: 70 PEPVVEPEPEPEPIPEPPKEAPVVIE 95
>SHIGARICIN#Ribosome inactivating protein family signature. Length = 289 Score = 30.6 bits (69), Expect = 0.033 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%) Query: 90 FENNYITLSKGIQEIKQNKKKVTGVV--IDAKGEPIIGANVVEIGTSNGI 137 EN++ LSK IQ N + V I+A+ + + NV ++ I Sbjct: 211 LENSWSALSKQIQIASTNNGQFETPVVLINAQNQRVTITNVDAGVVTSNI 260
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 29.0 bits (65), Expect = 0.044 Identities = 12/42 (28%), Positives = 21/42 (50%) Query: 30 GDMTKKIQAAIEQARSYNGKAVVIKLQNADYNLHRESSSQIL 71 G M K+ AAI +A++ L+ A L ++ +Q+L Sbjct: 272 GSMGPKVLAAIRFIEWGGERAIIAHLEKAVEALEGKTGTQVL 313
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 29.2 bits (65), Expect = 0.025 Identities = 15/48 (31%), Positives = 17/48 (35%), Gaps = 1/48 (2%) Query: 222 SENEQPMETEQALP-DEPVEQKVEQLTEPVTEPEVEPVAESLELPLQP 268 QP+ P D Q V+ EPV EPE EP P Sbjct: 39 PAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAP 86
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 29.9 bits (67), Expect = 0.019 Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 1/67 (1%) Query: 448 YKKWNTLKMLHHSKA-YEAAGEGYEELVPLMGHKPEFLFEAAQCLNRAERYTEANKLLYR 506 + + L + Y+ A Y + +P F F AA+CL + EA L+ Sbjct: 70 SRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFL 129 Query: 507 AMKLSGD 513 A +L D Sbjct: 130 AQELIAD 136
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 37.1 bits (86), Expect = 8e-05 Identities = 23/121 (19%), Positives = 46/121 (38%), Gaps = 12/121 (9%) Query: 79 IATIHVKNGDRVSKGQKLAELSTFRLKNKTATSKDALERAKLELQDVLI-------GQGY 131 + I VK G+ V KG L +L+ + T ++ +L +A+LE I + Sbjct: 107 VKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLP 166 Query: 132 ALADSAKVPPATM---QLVRVKSGYDQAL--IQYQLAEYEERNAVLTAPFDGIVANLFAK 186 L + + +++R+ S + Q Q + E A ++A + Sbjct: 167 ELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRY 226 Query: 187 Q 187 + Sbjct: 227 E 227 Score = 36.0 bits (83), Expect = 2e-04 Identities = 32/173 (18%), Positives = 58/173 (33%), Gaps = 38/173 (21%) Query: 145 QLVRVKSGYDQALIQYQLAEYEERNAVLTAPFDGIVANLFAKQYNTASTSDIFCTVIDPG 204 +L + ++ E ++ +V+ AP V L + +T V+ Sbjct: 303 KLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQL---KVHTEG------GVVTTA 353 Query: 205 -----------SLEAAFTVLESELPLIKNGDRVEVTPFALNDTKA---EGRITEINP--L 248 +LE V ++ I G + A T+ G++ IN + Sbjct: 354 ETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAI 413 Query: 249 VDE-NGMV------QVKAAVTDRGK---LFEGMNVRVSIH---RSLGKQLVVP 288 D+ G+V + ++ K L GM V I RS+ L+ P Sbjct: 414 EDQRLGLVFNVIISIEENCLSTGNKNIPLSSGMAVTAEIKTGMRSVISYLLSP 466
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 501 bits (1291), Expect = e-163 Identities = 207/1043 (19%), Positives = 428/1043 (41%), Gaps = 43/1043 (4%) Query: 1 MVKFLLQRPIAVLMAFTACFIVGLVTYFTIPVSLLPDIAIPEITIQVSGQNTSARELENT 60 M F ++RPI + + G + +PV+ P IA P +++ + A+ +++T Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VVKPIRQQLMQVTALRDIHSET-RDGAGIIRLSFDFGTNTDLAFIEVNEKIDAAMNYLPR 119 V + I Q + + L + S + G+ I L+F GT+ D+A ++V K+ A LP+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 120 EIERPRVIKASATDIPVFCLNLTLKTGDSEAAFLDLCQFAESVIKRRIEQLPEVAMVDIT 179 E+++ + ++ + + D+ + S +K + +L V V + Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQ--DDISDYVASNVKDTLSRLNGVGDVQLF 178 Query: 180 GMMKRQLQIVPDMKTLEMAGITLDDLESALNSNNIE------PGSMTVRDGYYEYNIKFS 233 G + ++I D L +T D+ + L N + G+ + +I Sbjct: 179 GA-QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQ 237 Query: 234 TLLRTPEDVQNIYLH--KNDRIFQLKDLAKVAVVPEKETGASLSNGKRAVTLAVIKQADE 291 T + PE+ + L + + +LKD+A+V + E + NGK A L + Sbjct: 238 TRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGA 297 Query: 292 N----MDNMKEALQEVTAYFATVYPDIEFSVSRNQTELLDYTISNLKQNLSLGFIFICIV 347 N +K L E+ +F ++ + T + +I + + L + + +V Sbjct: 298 NALDTAKAIKAKLAELQPFFP---QGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLV 354 Query: 348 AILFLGDIKSPAVIGLSMVVSLIISFLFFYMFKMSLNIISLSGLILALGMMIDSSIIVTE 407 LFL ++++ + +++ V L+ +F F S+N +++ G++LA+G+++D +I+V E Sbjct: 355 MYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVE 414 Query: 408 NITQYRTKGYTLT-EACDKGTTEVITPMLSSTFTTIAVFVPLVFMSGIAGAIFYDQAFAV 466 N+ + + EA +K +++ ++ AVF+P+ F G GAI+ + + Sbjct: 415 NVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITI 474 Query: 467 TVGLMVSYFTGIMLLPVL-YKLVYSIPDIKHTGFNLRINNLIKE-HTLDRFYDAGVNFVF 524 + +S ++L P L L+ + H Y V + Sbjct: 475 VSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKIL 534 Query: 525 RHKKSNIIFIFVTLPLCALLFYEVPKSRMPEIDQNELIAHIEWNENIHIDENRERVDKLF 584 ++ + + +LF +P S +PE DQ + I+ + ++ +D++ Sbjct: 535 GSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVT 594 Query: 585 AQI-AGDVQEYTSYVGQQQFLLNRDRELSSSEAELYFKTEKS-SAISPLQIKITQWLDTN 642 + S F + + ++ A + K + + + Sbjct: 595 DYYLKNEKANVESVFTVNGFSFS-GQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKME 653 Query: 643 YPQA----VFSFSPPITVFEKLFVTGEADVVAEFYARNKAEAPEAQTLHKLESQMKAS-T 697 + V F+ P V + +++ + + A L + +Q AS Sbjct: 654 LGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLV 713 Query: 698 GIAPVGVAFDNQLNISVDRQKLLLYNVNYNEVYRLLKTAFKENEVATLRSYQQYLPIALA 757 + P G+ Q + VD++K V+ +++ + + TA V + + + Sbjct: 714 SVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQ 773 Query: 758 GDGKTVNEV--LQQTLVRTQADKEGKSQYIPLQSLVKVTQGEDLKTVTA--GKNGEYI-- 811 D K + + VR+ + +P + + G I Sbjct: 774 ADAKFRMLPEDVDKLYVRSANGEM-----VPFSAFTTSHWVYGSPRLERYNGLPSMEIQG 828 Query: 812 -PFSFYDVKKAEPLMEEVKKMGEQNWEIDFSGSFFSNKQMLNELVVILLISILLMYFILA 870 A LME + D++G + + N+ ++ IS ++++ LA Sbjct: 829 EAAPGTSSGDAMALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLA 888 Query: 871 AQFESFLQPLIVLIEIPIDVAASLLVLWICGHTMNLMSAIGIVVTCGIIINDSILKLDAI 930 A +ES+ P+ V++ +P+ + LL + ++ +G++ T G+ ++IL ++ Sbjct: 889 ALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFA 948 Query: 931 NEL-RKEGVPLMEAIHEAGRRRLRPIIMTSLTTIFGMVPLLFSFDMGSELQKPLSIAMIS 989 +L KEG ++EA A R RLRPI+MTSL I G++PL S GS Q + I ++ Sbjct: 949 KDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMG 1008 Query: 990 AMLIGTAVSLFIIPLVYWFIYRK 1012 M+ T +++F +P+ + I R Sbjct: 1009 GMVSATLLAIFFVPVFFVVIRRC 1031
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 316 bits (810), Expect = 8e-94 Identities = 201/1109 (18%), Positives = 400/1109 (36%), Gaps = 139/1109 (12%) Query: 10 FTIIVTFLCVALTGLAFIPLLPIKLSPSRTLPRLTVSYNMPGNSARVIEMEVTSRLESML 69 V + + + G I LP+ P+ P ++VS N PG A+ ++ VT +E + Sbjct: 10 IFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVTQVIEQNM 69 Query: 70 ARIKGIKEINSTSGN-GWGYVTLELDKHTNIDAARFEASTIVRQTWPSLPDGLSYPILEM 128 I + ++STS + G +TL T+ D A+ + ++ P LP + Sbjct: 70 NGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEVQQQ---G 126 Query: 129 SRPDDKESGPFMTYTLNA---AATPIFIQRFAEDQIKPRLAGIPGIYRIDVRGATPMEWR 185 + S M + T I + +K L+ + G+ + + GA R Sbjct: 127 ISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA-QYAMR 185 Query: 186 LEYDSRQLVSLGITTNDIQNAIAQYYNKEFLGTGNVNTNEQEEWIRLALI---------P 236 + D+ L +T D+ N + + + G + +L P Sbjct: 186 IWLDADLLNKYKLTPVDVINQLKV--QNDQIAAGQLGGTPALPGQQLNASIIAQTRFKNP 243 Query: 237 EDVREGFEASHITVTSKEGKLIRLDQLLKVTRQEEAPQSYYRINGLNSIYLSIRAEETAN 296 E+ + + +G ++RL + +V E RING + L I+ AN Sbjct: 244 EEFGK-----VTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGAN 298 Query: 297 QLELAKQVKEEMEHIRQLLPQGYEVHTSYDATEFIQNELDKIYVRTGLTILILLLFVLLI 356 L+ AK +K ++ ++ PQG +V YD T F+Q + ++ I+++ L + L Sbjct: 299 ALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLF 358 Query: 357 TRNVRYLFLIVVSLSVNLCIAVIFFYLAKLEMQLYSLAGVTISLSLVIDNTIVMTDHIRN 416 +N+R + +++ V L + ++ G+ +++ L++D+ IV+ +++ Sbjct: 359 LQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER 418 Query: 417 RHN--------------RKAFLSILTATLTTIGALVIIFFLDEKIRLNLQDFAAVVIINL 462 + +++ + + + F + F+ ++ + Sbjct: 419 VMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAM 478 Query: 463 AVSLAIALLFVPALIEKLGLGQKKSAARKAKLSLKP-KTTWFPRIRRWGNRFLKRFPVYF 521 A+S+ +AL+ PAL L LKP + F F Sbjct: 479 ALSVLVALILTPALCATL---------------LKPVSAEHHENKGGFFGWFNTTFDHSV 523 Query: 522 NRYYHAQISFLCRWKKTACFLLLLAFGLPVFLLPEKIEMDDKDKVYTATDSLLIEKYNKI 581 N Y ++ L T +LL+ A Sbjct: 524 NHYTNSVGKIL---GSTGRYLLIYAL---------------------------------- 546 Query: 582 VSSETYKEKVKPIMDKALGGTLRLFVQKVYEGSYFTRNDETVLSVTASLPNGTTLEQMNQ 641 + G + LF++ S+ D+ V LP G T E+ + Sbjct: 547 ----------------IVAGMVVLFLR--LPSSFLPEEDQGVFLTMIQLPAGATQERTQK 588 Query: 642 LMGRMEAYLSTFKDIRQ-----FQTNIYS----ARQAGIR-IYFTKAAERSGFPYTLKSK 691 ++ ++ Y K+ + F N +S A+ AG+ + ER+G + ++ Sbjct: 589 VLDQVTDYY--LKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAV 646 Query: 692 IISKALELGGGSWG-VYGLQDQGFSN-DVREGAGSFRIEMFGYNYDELYTWAEQLKDTLL 749 I +ELG G V G I+ G +D L QL Sbjct: 647 IHRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAA 706 Query: 750 TYRRIKEVLINSEFSWWKDDYQEFYFNLDKARMAQENILPIELFASINPVFGKDIYSGTI 809 + ++ S +D +F +D+ + + ++ +I+ G Y Sbjct: 707 QH--PASLV--SVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGT-YVNDF 761 Query: 810 VVDNETEK--LKLSSRQSKDYDVWSMQYVPQSIKGKPYKLSELATVEKGQMPQKVAKVNQ 867 + +K ++ ++ + YV + G+ S T ++ + N Sbjct: 762 IDRGRVKKLYVQADAKFRMLPEDVDKLYVRSA-NGEMVPFSAFTTSHWVYGSPRLERYNG 820 Query: 868 QYRLCLQYEYIGASNQGTKIQERVLKEFNASLPMGYTAKSDSNYWSWNTKDNKQYLLLLL 927 + +Q E ++ G + +++ + LP G + N+ L+ + Sbjct: 821 LPSMEIQGEAAPGTSSGDAMA--LMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAI 878 Query: 928 IIAIIFFTTSILFNSLKQPLAVIFVIPISYIGVFLTFYWFKLNFDQGGFASFVLLCGITV 987 ++F + L+ S P++V+ V+P+ +GV L F D + G++ Sbjct: 879 SFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSA 938 Query: 988 NASIYILNEYNQLREASPKMPAWRLYLKAWNAKITPIFLTVISTILGFIPFML--GPDKE 1045 +I I+ L E L A ++ PI +T ++ ILG +P + G Sbjct: 939 KNAILIVEFAKDLMEKE-GKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSG 997 Query: 1046 AFWFPLAAGTIGGLTMS-ILGIFIYLPIF 1073 A + G +GG+ + +L IF +P+F Sbjct: 998 AQN-AVGIGVMGGMVSATLLAIFF-VPVF 1024 Score = 51.4 bits (123), Expect = 2e-08 Identities = 53/355 (14%), Positives = 123/355 (34%), Gaps = 22/355 (6%) Query: 732 YNYDELYTWAE-QLKDTLLTYRRIKEVLINSEFSWWKDDYQEFYFNLDKARMAQENILPI 790 D++ + +KDTL R+ V + + Y LD + + + P+ Sbjct: 149 TTQDDISDYVASNVKDTL---SRLNGV---GDVQLFGAQYA-MRIWLDADLLNKYKLTPV 201 Query: 791 ELFASINP----VFGKDIYSGTIVVDNETEKLKLSSRQSKDYDVWSMQYVPQSIKGKPYK 846 ++ + + + + + ++ + K+ + + + + G + Sbjct: 202 DVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFKNPEEFGKVTLRVNSDGSVVR 261 Query: 847 LSELATVEKG-QMPQKVAKVNQQYRLCLQYEYIGASNQGTKIQERV---LKEFNASLPMG 902 L ++A VE G + +A++N + L + +N + + L E P G Sbjct: 262 LKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA-LDTAKAIKAKLAELQPFFPQG 320 Query: 903 YTAKSDSNYWSWNTKDNKQYLLLLLI-IAIIFFTTSILFNSLKQPLAVIFVIPISYIGVF 961 + + + + L I ++F + +++ L +P+ +G F Sbjct: 321 MKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTF 380 Query: 962 LTFYWFKLNFDQGGFASFVLLCGITVNASIYIL-NEYNQLREASPKMPAWRLYLKAWNAK 1020 F + + VL G+ V+ +I ++ N + E K+P K+ + Sbjct: 381 AILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMMED--KLPPKEATEKSMSQI 438 Query: 1021 ITPIFLTVISTILGFIP-FMLGPDKEAFWFPLAAGTIGGLTMSILGIFIYLPIFT 1074 + + FIP G A + + + + +S+L I P Sbjct: 439 QGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALC 493
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 28.7 bits (64), Expect = 0.041 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 1/58 (1%) Query: 483 AEFLLEGARCLQQSGQYSNAII-WSRRAIRLSADPEFYYILAQSHQQLGLYKLAEKYL 539 + F L C Q GQY AI +S AI +P F + A+ Q G AE L Sbjct: 70 SRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGL 127
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 24.9 bits (54), Expect = 0.047 Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 9/52 (17%) Query: 2 LSAILLQAAAGAGIAKLGATVGAGLAAIGAGIGIGLIGKGAVEGI---SRQP 50 +S +L ++G A + VGA ++A+ + G + GI S+Q Sbjct: 371 ISTVLASVSSGISAAATTSLVGAPVSALVGAV------TGIISGILEASKQA 416
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 27.3 bits (60), Expect = 0.029 Identities = 18/128 (14%), Positives = 48/128 (37%), Gaps = 8/128 (6%) Query: 35 KAVEQRKEYIDHSLESARQANEQLAGIQAESEKILAQAREQQNEILKQALAEKEQIISAA 94 K E++++ + S + N + IQ K ++Q +N +A + Sbjct: 282 KIREEKQKQVTASETRINRINADITQIQ----KAISQVSNNRN----AGIARVHEAEENL 333 Query: 95 RQKASAEAHLQLEEATRRIGEEKDKAIREVRTEIADLSVAIAEKVMKEKISRTDEQEKII 154 ++ + + Q+++A + + + ++ +A+K +KI +E Sbjct: 334 KKAQNNLLNSQIKDAVDATVSFYQTLTEKYGEKYSKMAQELADKSKGKKIGNVNEALAAF 393 Query: 155 NGLLDNVS 162 D ++ Sbjct: 394 EKYKDVLN 401
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 44.4 bits (105), Expect = 4e-07 Identities = 16/94 (17%), Positives = 38/94 (40%), Gaps = 2/94 (2%) Query: 65 IYPQVSGFITQLCVEEGQAVRKGQLLFVIDQVPYQAALQTAQANVEAAEAALSTAKLTLD 124 I P + + ++ V+EG++VRKG +L + + +A Q+++ A + ++ Sbjct: 99 IKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSR 158 Query: 125 SKKELHAQNVVSAFD--LQTAENSWLSAKAQLAQ 156 S + + + Q + L + Sbjct: 159 SIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIK 192 Score = 37.5 bits (87), Expect = 7e-05 Identities = 18/141 (12%), Positives = 35/141 (24%), Gaps = 44/141 (31%) Query: 98 YQAALQTAQANVEAAEAALSTAKLTLDSKKELHAQNVVSAFDLQTAENSWLSAKAQL--- 154 +A T A + E K LD L + ++ + EN ++ A +L Sbjct: 212 KRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVY 271 Query: 155 -----------------------------------AQMKALELN-----ARNNLSYTEVK 174 L + ++ Sbjct: 272 KSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIR 331 Query: 175 SPSNGVVGTLP-YRVGALVSA 194 +P + V L + G +V+ Sbjct: 332 APVSVKVQQLKVHTEGGVVTT 352
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 861 bits (2227), Expect = 0.0 Identities = 367/1031 (35%), Positives = 574/1031 (55%), Gaps = 11/1031 (1%) Query: 4 RTFIERPVLSAVISIVIVFMGIIGLTSLPVEQYPDIAPPTVMVSTTYFGASAETLQKSVI 63 FI RP+ + V++I+++ G + + LPV QYP IAPP V VS Y GA A+T+Q +V Sbjct: 3 NFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVT 62 Query: 64 APLEEAINGVEDMTYMTSTATNAGTVSIMVYFKQGTDPDMATVNVQNRVSKATGQLPAEV 123 +E+ +NG++++ YM+ST+ +AG+V+I + F+ GTDPD+A V VQN++ AT LP EV Sbjct: 63 QVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEV 122 Query: 124 TQVGVTTTKRQTSMLQIFSIYSPDDSYDEGFLANYLSINLKPEILRISGVGELMVMGGDY 183 Q G++ K +S L + S + + +++Y++ N+K + R++GVG++ + G Y Sbjct: 123 QQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGAQY 182 Query: 184 SMRVWMKPDVMAQYNLIPSDVTAVLAEQNIESATGAFGENST---ETYQYTMKYKGRLIQ 240 +MR+W+ D++ +Y L P DV L QN + A G G + ++ + R Sbjct: 183 AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFKN 242 Query: 241 PEEFGDIVIRSTEDGEVLKLKDIAEIELGRENYSYIGELSGHVGVSCMVFQTAGSNATEV 300 PEEFG + +R DG V++LKD+A +ELG ENY+ I ++G + G+NA + Sbjct: 243 PEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDT 302 Query: 301 NQQIDAFLDEARKDLPKGVEIVQMMSSNDFLFASIHEVIKTLIEAILLVILVVYIFLQDI 360 + I A L E + P+G++++ + F+ SIHEV+KTL EAI+LV LV+Y+FLQ++ Sbjct: 303 AKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNM 362 Query: 361 RSTLIPLVGIIVSLIGTFAFMSIAGFSINLITLFALVLVIGTVVDDAIVVVEAVQARFDV 420 R+TLIP + + V L+GTFA ++ G+SIN +T+F +VL IG +VDDAIVVVE V+ Sbjct: 363 RATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMME 422 Query: 421 GYKSSYMASMDAMSGISAAIISSSLVFMAVFIPVSFMSGTSGTFYTQFGLTMAVAVGISA 480 A+ +MS I A++ ++V AVFIP++F G++G Y QF +T+ A+ +S Sbjct: 423 DKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSV 482 Query: 481 INALTLSPALCALILKPYINEDGSQKNNFASRFRKAFNTAFDVLIAKYKKGVLFFIKRRW 540 + AL L+PALCA +LKP E K F FNT FD + Y V + Sbjct: 483 LVALILTPALCATLLKPVSAEHHENKGGFFGW----FNTTFDHSVNHYTNSVGKILGSTG 538 Query: 541 LMWSMLACSVVLLFFLMKTTKTSLVPDEDQGVLFVNVTTAAGNSLATTNDVMTNIENRI- 599 + A V + L +S +P+EDQGV + AG + T V+ + + Sbjct: 539 RYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYL 598 Query: 600 KDLPQIKEYNKVSGYGLISGQGNSFGMFIIKLKPWDERTDKEDHVQSVINQVYGRTADIK 659 K+ E SGQ + GM + LKPW+ER E+ ++VI++ I+ Sbjct: 599 KNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIR 658 Query: 660 DATVFAMSPGMIPGYGMGNALEMYMQDKKGGDLTDFFNTTQQYLGALRERP-EIAAAYST 718 D V + I G + + D+ G Q LG + P + + Sbjct: 659 DGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPN 718 Query: 719 FSINYPQWEVTVDAAKCKRAGITPDAVLSTLSGYYGGQYVSNFNRFSKVYKVMIQASPDY 778 + Q+++ VD K + G++ + T+S GG YV++F +V K+ +QA + Sbjct: 719 GLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKF 778 Query: 779 RLDESSLDNTFVRMANGEMAPLSQFVNLTKVYGAESLSRFNMYNSIGVNAMPAPGYSSGD 838 R+ +D +VR ANGEM P S F VYG+ L R+N S+ + APG SSGD Sbjct: 779 RMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGD 838 Query: 839 AINAVKEVAATSLPKGYGYDFAGITREENQESNTTAVIFAICILMIYLILSALYESFLIP 898 A+ ++ A+ LP G GYD+ G++ +E N + AI ++++L L+ALYES+ IP Sbjct: 839 AMALMEN-LASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIP 897 Query: 899 FAVILSVPFGLMGSFLFARMMGLENNIYLQTGLIMLIGLLAKTAILLTEYATERRAA-GM 957 +V+L VP G++G L A + +N++Y GL+ IGL AK AIL+ E+A + G Sbjct: 898 VSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGK 957 Query: 958 SLTSAALSAAKVRLRPILMTALTMIFGLLPLVVATGVGANGNSSLGTGAVGGMLIGTLAL 1017 + A L A ++RLRPILMT+L I G+LPL ++ G G+ +++G G +GGM+ TL Sbjct: 958 GVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLA 1017 Query: 1018 LFVVPSLFIVF 1028 +F VP F+V Sbjct: 1018 IFFVPVFFVVI 1028
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 33.5 bits (76), Expect = 0.003 Identities = 39/206 (18%), Positives = 57/206 (27%), Gaps = 30/206 (14%) Query: 442 NEKQWETGEDDEELFEYAMHPAQYEAYRSGKAKVEFLADVAQKKAALQEKAQPATPATAA 501 NE E E A E K + E +V + + Q + T Sbjct: 1083 NEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTS--QVSPKQEQSETVQ 1140 Query: 502 PAALPTTPQVLTVDVD------------GQPYRVTVAFGDTANTTPAAAPAQAAQPAAPA 549 P A P TV++ QP + T + + T + P Sbjct: 1141 PQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPE 1200 Query: 550 APAPAGAGNEILSPLEGKFFLVKN----------ASDTPLKVGDIVKEGDVLCYVEAMKT 599 PA + S K KN + P + LC + T Sbjct: 1201 NTTPATTQPTVNSESSNK---PKNRHRRSVRSVPHNVEPATTSSNDRSTVALC--DLTST 1255 Query: 600 Y-NAVRSEFSGKITSINYAGGDTVSE 624 NAV S+ K + G VS+ Sbjct: 1256 NTNAVLSDARAKAQFVALNVGKAVSQ 1281
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 131 bits (331), Expect = 2e-39 Identities = 86/258 (33%), Positives = 133/258 (51%), Gaps = 17/258 (6%) Query: 9 LKGKKGFITGAARGIGKCLADAFTEMGASIAIVDIDIAEAEKTAKELAARYSAHTIAIRC 68 ++GK FITGAA+GIG+ +A GA IA VD + + EK L A + H A Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAE-ARHAEAFPA 64 Query: 69 DVTDAEDIGQMMDTFIKKYGSIDFAINNAGIANTYAAEEISSKDFKKVVDINLNGVFLTA 128 DV D+ I ++ ++ G ID +N AG+ +S ++++ +N GVF + Sbjct: 65 DVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 129 QAAARQMIKEGKAGSIVNTASMSAHIINTPQT-IANYCASKGGVLLLTKALAVEWAKYNI 187 ++ ++ M + ++GSIV S A P+T +A Y +SK ++ TK L +E A+YNI Sbjct: 125 RSVSKYM-MDRRSGSIVTVGSNPAG---VPRTSMAAYASSKAAAVMFTKCLGLELAEYNI 180 Query: 188 RVNCVSPGYMATELVAEM-----------KDMHEGWISKIPAGRLGVPKDLIGAYLYLLS 236 R N VSPG T++ + K E + + IP +L P D+ A L+L+S Sbjct: 181 RCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVS 240 Query: 237 DAARYTTGTDLIVDGGYT 254 A + T +L VDGG T Sbjct: 241 GQAGHITMHNLCVDGGAT 258
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 33.7 bits (77), Expect = 0.005 Identities = 50/259 (19%), Positives = 92/259 (35%), Gaps = 25/259 (9%) Query: 20 LANLAGVFLVA-GTLTLSASTYATEHMLSLNLKNATIREAIESIKSQSEFSFSLDVKDLN 78 +AN+ F + A S + K I+E I ++ + + D + Sbjct: 3 IANVIRSFSLTLLIFAALLFRPAAAEEFSASFKGTDIQEFINTVSKNLNKTV---IIDPS 59 Query: 79 LDEKVSV-SLDNKSINEV----LAVL-FNGRNVRYEINDRHIVI------TRAGKVGPES 126 + ++V S D + + L+VL G V N V+ T A V ++ Sbjct: 60 VRGTITVRSYDMLNEEQYYQFFLSVLDVYGFAVINMNNGVLKVVRSKDAKTAAVPVASDA 119 Query: 127 VMQQTKRITGRVLDANN----EPVIGANVVVDGTTIGTVTDVDGNFTLDVPDGATLKISY 182 + RV+ N + + D +G+V + + L + A + Sbjct: 120 APGIGDEVVTRVVPLTNVAARDLAPLLRQLNDNAGVGSVVHYEPSNVLLMTGRAAVIKRL 179 Query: 183 IGYIEQTIPVGKKSVISVILKEDSQALDEVVVVG--FGTQKKLNLTGAVTA--VTGEEMT 238 + +E+ G +SV++V L S A D V +V K L G++ A V E Sbjct: 180 LTIVERVDNAGDRSVVTVPLSWAS-AADVVKLVTELNKDTSKSALPGSMVANVVADERTN 238 Query: 239 KRPVTNAATMLQGQVPGLR 257 V+ Q + ++ Sbjct: 239 AVLVSGEPNSRQRIIAMIK 257
>SOPEPROTEIN#Salmonella type III secretion SopE effector protein signature. Length = 239 Score = 29.7 bits (66), Expect = 0.018 Identities = 32/135 (23%), Positives = 51/135 (37%), Gaps = 12/135 (8%) Query: 92 TSDSIFLVNLFIHDEVIRLLKEKYYNINIFFVVHYLDLNYLAKWDTNILNDLSSLEDTIV 151 T ++ N I + LLKEK N AK + N L + Sbjct: 1 TKITLSPQNFRIQKQETTLLKEKSTEKNSL-----------AKSILAVKNHFIELRSKLS 49 Query: 152 DKFNIHQLIERDRFIFNHVDKIICLSEETKKLLQTYYQLTENRISIVYNGLKDEAIFISK 211 ++F H+ E F+ + T K+++ + T N I I + KD A + S+ Sbjct: 50 ERFISHKNTESSATHFHRGSASEGRAVLTNKVVKDFMLQTLNDIDIRGSASKDPA-YASQ 108 Query: 212 MEKQLLKMRLSFNKD 226 + +L S NKD Sbjct: 109 TREAILSAVYSKNKD 123
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 86.4 bits (214), Expect = 2e-19 Identities = 35/151 (23%), Positives = 69/151 (45%), Gaps = 3/151 (1%) Query: 1058 KILIVEDNEELLQILNTLFTP-FYQVILAGNGEEGLRKTIEEKPDLVVSDVMMPLMSGME 1116 IL+ +D+ + +LN + Y V + N R DLVV+DV+MP + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 1117 MCMKIKNNIDLCHIPVVLLTALDSVEYNIEGFQQGADDYVSKPFHARVLLMRCNNLIRNR 1176 + +IK +PV++++A ++ I+ ++GA DY+ KPF L+ + Sbjct: 65 LLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122 Query: 1177 LLLKSRLTQQGDFDVQLLASTSLDQKLLNRI 1207 S+L + L+ ++ Q++ + Sbjct: 123 KRRPSKLEDDSQDGMPLVGRSAAMQEIYRVL 153
>PF06580#Sensor histidine kinase Length = 349 Score = 36.0 bits (83), Expect = 1e-04 Identities = 20/134 (14%), Positives = 46/134 (34%), Gaps = 11/134 (8%) Query: 39 FSSSNWYRVSEFKFFVFSSLIILTGVLVVVISRIVMYY-----WGRKHAISVGAYSVWII 93 F ++ Y + +F+ I L G+++ R + I + +I Sbjct: 28 FGFASLYGSPKLHSMIFNIAISLMGLVLTHAYRSFIKRQGWLKLNMGQIILRVLPACVVI 87 Query: 94 --LEIFFMSLFYTIYTLVLNPEREYLSVFKESAINTSLVLLLPYSVL----HFYFSYQEK 147 + + + + + + S I +V+ +S+L HF+ +Y++ Sbjct: 88 GMVWFVANTSIWRLLAFINTKPVAFTLPLALSIIFNVVVVTFMWSLLYFGWHFFKNYKQA 147 Query: 148 ERQLRLLEEDRAEA 161 E + EA Sbjct: 148 EIDQWKMASMAQEA 161
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 37.9 bits (88), Expect = 8e-05 Identities = 38/191 (19%), Positives = 70/191 (36%), Gaps = 36/191 (18%) Query: 18 ICAMLFFATTVNYLDRQVLSLLQPMLEEEFHWTDNDYGTITAIFSLFYAISMLFAGRFID 77 +C + FF+ L+ VL++ P + +F+ + F L ++I G+ D Sbjct: 19 LCILSFFSV----LNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSD 74 Query: 78 WMGTRKGYAWSIAVWSAGAALHALCGVLTEKWVGLPDADALRAVAAGTDLAATISMVSVT 137 +G ++ + I + G+ + + + Sbjct: 75 QLGIKRLLLFGIIINCFGS------------------------------VIGFVGHSFFS 104 Query: 138 FFIIARCVLALGEAGNFPAAIK-ATAEYFPKKDRAFATGIFNSGANVGAIVAPLTVPLMA 196 I+AR + G A FPA + A Y PK++R A G+ S +G V P ++A Sbjct: 105 LLIMARFIQGAGAAA-FPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIA 163 Query: 197 ELWGWEMAFII 207 W +I Sbjct: 164 HYIHWSYLLLI 174
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 94.9 bits (236), Expect = 4e-22 Identities = 28/129 (21%), Positives = 55/129 (42%), Gaps = 6/129 (4%) Query: 1080 TLLLVEDNDTMRSFLAEKLQEM-FVTETAPDGKAALEILRNHHIDIVVSDIMMPVMNGLE 1138 T+L+ +D+ +R+ L + L + + + D+VV+D++MP N + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 1139 LCKEMKADIELSHIPVIFLTAKNDLDSKINGLRLGAEAYVEKPFSFN---YLTTQIFSLL 1195 L +K +PV+ ++A+N + I GA Y+ KPF + + + Sbjct: 65 LLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122 Query: 1196 NNRQKEREA 1204 R + E Sbjct: 123 KRRPSKLED 131
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 129 bits (325), Expect = 1e-38 Identities = 79/255 (30%), Positives = 118/255 (46%), Gaps = 10/255 (3%) Query: 1 MEKRIVMVTGSGMGIGLACAEAFAREGATVIMAD--IQKPEEQARKLIDAGYDAVAYQCD 58 +E +I +TG+ GIG A A A +GA + D +K E+ L A A+ D Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 59 VSDVQAVKEMIDWIVSTYGRLDAALNNAGIQTPQRPMAEITDDEFDRTVAVDLKGVWNCM 118 V D A+ E+ I G +D +N AG+ P + ++D+E++ T +V+ GV+N Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPG-LIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 119 KFEIGQMLKQGGGAIVNTSSQGGVTAFAGQAAYISCKHGVIGMTRTAAMDYAAKGIRINA 178 + M+ + G+IV S AAY S K + T+ ++ A IR N Sbjct: 125 RSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNI 184 Query: 179 VCPGVILTPMAEELIRRNPQLEKELVRD-------IPAGRLGKPEEIADAVLWLCSPASS 231 V PG T M L E+ + IP +L KP +IADAVL+L S + Sbjct: 185 VSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAG 244 Query: 232 FVHGHALLVDGGFTI 246 + H L VDGG T+ Sbjct: 245 HITMHNLCVDGGATL 259
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 33.0 bits (75), Expect = 0.008 Identities = 12/62 (19%), Positives = 31/62 (50%), Gaps = 5/62 (8%) Query: 31 LVISLLTFTVKASAQKVSISFNNAKVEKVLSSISKQTGLSIAYSKQIVNLDRKVSIKVEN 90 L+I A+A++ S SF +++ ++++SK ++ I++ + +I V + Sbjct: 14 LLIFAALLFRPAAAEEFSASFKGTDIQEFINTVSKNLNKTV-----IIDPSVRGTITVRS 68 Query: 91 AN 92 + Sbjct: 69 YD 70
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 28.5 bits (63), Expect = 0.045 Identities = 38/152 (25%), Positives = 67/152 (44%), Gaps = 16/152 (10%) Query: 215 ENLFPEPEKPTETNLSNKNLM---TKIKNSLAALWAFCNFPADREEQEIT-DEHLLKVNN 270 E+L E EK E+ NKN M + + ++A N A+R+ + I ++L + Sbjct: 622 EHLEKEVEKKLESKSGNKNKMEAKAQANSQKDEIFALINKEANRDARAIAYAQNLKGIKR 681 Query: 271 ELAARQEIIN----NLTSERDQLQA----KVTEKDQKIANLENKVAELNGKPGAVT-TEP 321 EL+ + E +N + D+ + ++ ++ + L+ V +L P ++ E Sbjct: 682 ELSDKLENVNKNLKDFDKSFDEFKNGKNKDFSKAEETLKALKGSVKDLGINPEWISKVEN 741 Query: 322 TNATDT---NGGSDDTIADINAAKDLYNSIKD 350 NA NG + D A DL NS+KD Sbjct: 742 LNAALNEFKNGKNKDFSKVTQAKSDLENSVKD 773
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 30.9 bits (70), Expect = 0.014 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 10/73 (13%) Query: 2 INGNDQILSAGRSSREVYFNPPQQKVMFTAANKTVFVGGRRLGKTHGIAA------PWTL 55 I G +I++AG ++F PQQ + T +GG G HG A PW Sbjct: 121 IAGEGKIVTAGGMDSHIHFICPQQIEEALMSGLTCMLGG-GTGPAHGTLATTCTPGPW-- 177 Query: 56 RNVQRMPKSAGAF 68 ++ RM ++A AF Sbjct: 178 -HIARMIEAADAF 189
>PF03944#delta endotoxin Length = 633 Score = 28.1 bits (62), Expect = 0.043 Identities = 17/54 (31%), Positives = 23/54 (42%) Query: 118 LKKNSIPVLTSLDGNIGLNRGYYYRVHNDMLELYVESDNGIEVSITPIGYFGVT 171 L N I + S G G R Y VHN ++ +NG + + P Y G T Sbjct: 442 LHYNEIRNIASPSGTPGGARAYMVSVHNRKNNIHAVHENGSMIHLAPNDYTGFT 495
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 35.8 bits (82), Expect = 0.001 Identities = 40/307 (13%), Positives = 88/307 (28%), Gaps = 9/307 (2%) Query: 744 SESSGTGGSGGGSGEEEKKKSLLQIQKDLREEAEKMPETTEAEIAAKNRKIEVIDAEIAR 803 S + + +E+ L+ + + +A + E + + Sbjct: 41 SAVATRSQTDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEK 100 Query: 804 LKSLGNLKGTQAKQDKEEAKQKKALEKALKDSDQTFAVVKNAEKAKYYNQEIKNEALYNK 863 L+ +A + +E +K LEKAL+ + K E A Sbjct: 101 LRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTL--EAEKAALAARKA 158 Query: 864 HIEMIEMASLDNRIRLMKEHG------QKSDAEEEKLMNKRIAFLKKYGKKLNFTDYIGD 917 +E +++ + +A + +L + + Sbjct: 159 DLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEA 218 Query: 918 IKVEEEKEDPEVERLIERTKKSYEYKQAALLDQYEKGLITQKEYQEQERELQEEHLETML 977 K ++E+ +E A + E + Q + + E + Sbjct: 219 EKAALAARKADLEKALEGAMNFSTADSAKI-KTLEAEKAALEARQAELEKALEGAMNFST 277 Query: 978 SKQINYANQVAQIASQASQLVSKLSQSEELAIENKYAAQLKAAKGNAKKTAALEEQMEEE 1037 + A+ A+ ++ QS+ L + + A AKK E Q EE Sbjct: 278 ADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEE 337 Query: 1038 KKAVKKK 1044 + + + Sbjct: 338 QNKISEA 344
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 162 bits (412), Expect = 5e-45 Identities = 99/438 (22%), Positives = 171/438 (39%), Gaps = 68/438 (15%) Query: 3 KIRNIAIIAHVDHGKTTLVDKMLL-AGKLFREGQA-EPDQFLDNNDLERERGITILAKNV 60 KI NI ++AHVD GKTTL + +L +G + G + DN LER+RGITI Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 61 SINYKDCKINIIDTPGHADFGGEVERVLNMADGCLLLVDAFEGPMPQTRFVLQKAIQLGL 120 S +++ K+NIIDTPGH DF EV R L++ DG +LL+ A +G QTR + ++G+ Sbjct: 62 SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGI 121 Query: 121 KPIVVINKVDKPNCRPSEVQEMVFDLMFSLDATEEQL--DFPTIYGSAKQGWMSEDWQKP 178 I INK+D+ S V + + + + S + +Q +P + + SE W Sbjct: 122 PTIFFINKIDQNGIDLSTVYQDIKEKL-SAEIVIKQKVELYPNMCVTNFT--ESEQWDTV 178 Query: 179 AEDIYALL---------------------------------------------DAIIKYI 193 E LL + I Sbjct: 179 IEGNDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKF 238 Query: 194 PEPEVLEGTP-QMLITSLDFSKYVGRIAVGRVHRGELREGQDVMLCKRDGSMVKSKIKEL 252 + + +++S+ R+A R++ G L V + +++ K KI E+ Sbjct: 239 YSSTHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKE----KIKITEM 294 Query: 253 DIFEGLGRTKVDSVKSGDICAVIGIDGFEIGETIADINEPEPLPTIAIDEPTMSMLFTIN 312 K+D SG+I + + ++ + D I P + + Sbjct: 295 YTSINGELCKIDKAYSGEIVILQN-EFLKLNSVLGDTKLLPQRERIENPLPLLQTTVEPS 353 Query: 313 NSPFFGKDGKFVTSRHIFERLQKELDKNLALRVVPTDSADSWLVYGRGVLHLSVLIETMR 372 + + L + D + LR + ++ G + + V ++ Sbjct: 354 KPQQREM---------LLDALLEISDSDPLLRYYVDSATHEIILSFLGKVQMEVTCALLQ 404 Query: 373 RE-GYELQVGQPQVIIKE 389 + E+++ +P VI E Sbjct: 405 EKYHVEIEIKEPTVIYME 422 Score = 42.5 bits (100), Expect = 4e-06 Identities = 18/80 (22%), Positives = 30/80 (37%) Query: 396 EPVEQLTINLPEESSSRIIDMVTKRKGEMTMMESKNDRMHLEFNIPSRGIIGLNNAVLTA 455 EP I P+E SR K + + KN+ + L IP+R I + + Sbjct: 537 EPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQLKNNEVILSGEIPARCIQEYRSDLTFF 596 Query: 456 SAGEAIMAHRFLEYQPWKGD 475 + G ++ Y G+ Sbjct: 597 TNGRSVCLTELKGYHVTTGE 616
>TACYTOLYSIN#Bacterial thiol-activated pore-forming cytolysin signature. Length = 574 Score = 27.6 bits (61), Expect = 0.032 Identities = 23/128 (17%), Positives = 51/128 (39%), Gaps = 19/128 (14%) Query: 53 KIARVLGVRLGTFLDDQSELGPVICRKKDSNDSNSIGFTNNSMENRKHMEYHSLSQDKSG 112 K +RV G+ + +G ++ DSN N+ + + E L+ +K+G Sbjct: 12 KYSRVAGLLTAALI-----VGNLVTANADSNKQNTANTETTTTNEQPKPESSELTTEKAG 66 Query: 113 RHMEPFL-----IDVSPSEDGVDFI---------LSTHEGEEFIYVLEGVLEINYGKNTY 158 + M+ L I ++P E ++ E + + + + +NY + Sbjct: 67 QKMDDMLNSNDMIKLAPKEMPLESAEKEEKKSEDNKKSEEDHTEEINDKIYSLNYNELEV 126 Query: 159 ILEEGDSI 166 + + G++I Sbjct: 127 LAKNGETI 134
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 29.0 bits (65), Expect = 0.043 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 2/45 (4%) Query: 314 AGSLCPVELMR--QVEEKMFMRVTSVYGLTETSPGMTHSRIDDPA 356 G L +E R +++ ++ +SVYGL P T +D P Sbjct: 104 TGFLNILEGCRHNKIQHLLYASSSSVYGLNRKMPFSTDDSVDHPV 148
>PF05043#Transcriptional activator Length = 493 Score = 29.1 bits (65), Expect = 0.023 Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 3/67 (4%) Query: 226 LSIYPMVNLVTNIGLHSIE--ATHTTARNDDLFVLSEEMKFPLKHPVYIKANVEIDDFTV 283 L + + NL H +E ++ D + +E ++ + + N+ +D+ V Sbjct: 200 LKLLLVTNLYRIKFGHFMEVDKDSFNDQSLDFLMQAEGIE-GVAQSFESEYNISLDEEVV 258 Query: 284 AHQFFSY 290 F SY Sbjct: 259 CQLFVSY 265
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 28.6 bits (64), Expect = 0.025 Identities = 15/77 (19%), Positives = 33/77 (42%), Gaps = 3/77 (3%) Query: 27 MAVSIEGTRKILACLKRHQIHATFFCTANFAAHAPEIIENILQDGHEIASHGYYHSSFEM 86 +++ E + K+ L + +I + F A E+ +N+L + E+ + + Sbjct: 26 VSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKDNVLLEFKELMMAQEF---IQK 82 Query: 87 EDLKRSREFLEQQTGQP 103 + +RE LE+ G Sbjct: 83 GGIDYARELLEKSLGTQ 99
>PF05704#Capsular polysaccharide synthesis protein Length = 307 Score = 47.2 bits (112), Expect = 2e-08 Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 7/109 (6%) Query: 1 MIPKVIHLCWFS-DDPFPVEIKICLASWKRILPDYTVRRWT---YADAMAIGCDFIAEAL 56 M K I +CW + P ++ C+AS K+ D+ V Y + + I DF+ + Sbjct: 66 MRQKYIFICWLQGIEKAPYIVQQCVASVKKNSGDFKVIIIDGNNYKEWVDIP-DFLIKRW 124 Query: 57 RAKK--WAFAADAVRFYAIYKEGGIYMDSDMLVEKRFDSFIPQHGFATF 103 + K A+ +D +R + + K GG+++D+ + + + ++I + F Sbjct: 125 QEGKMLDAWFSDILRLFLLCKYGGLWIDATVYMFDKVPNYIVESNRFMF 173
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 36.9 bits (85), Expect = 1e-05 Identities = 7/49 (14%), Positives = 15/49 (30%), Gaps = 1/49 (2%) Query: 92 VLINAIIEKDSTATQVKVVGKGCGVKELEEEAVRLIKAAKVSPASDEHG 140 V + + D V+++ E E ++ + P G Sbjct: 180 VKVKFDVTPDGRVDNVQIL-SAKPANMFEREVKNAMRRWRYEPGKPGSG 227
>PF05272#Virulence-associated E family protein Length = 892 Score = 35.0 bits (80), Expect = 2e-04 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 13/67 (19%) Query: 30 KGEFVAIM-GPSGCGKSTLLNILG-------TLDSSTSGKYFFD---GKEIDKMSESQLT 78 K ++ ++ G G GKSTL+N L T +GK ++ G ++SE +T Sbjct: 594 KFDYSVVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTGKDSYEQIAGIVAYELSE--MT 651 Query: 79 SFRKGNI 85 +FR+ + Sbjct: 652 AFRRADA 658
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 61.4 bits (149), Expect = 2e-12 Identities = 44/233 (18%), Positives = 94/233 (40%), Gaps = 40/233 (17%) Query: 1 MDTPIERKSRLKKKHLYAMAGGTFLLVCLLYFIFRDTSSSMKVDKERLTISTIVQGEFND 60 ++TP+ R+ RL + M FL++ + + ++ I G+ Sbjct: 49 IETPVSRRPRLV--AYFIMG---FLVIAFILSVLG-----------QVEIVATANGKL-- 90 Query: 61 YIRVIGQVLPDRIIYLDAIEGGRVEERLIEEGAQVKAGDVILRLSNPLLNIGILQSEADL 120 R + IE V+E +++EG V+ GDV+L+L+ L +EAD Sbjct: 91 -------THSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTA-------LGAEADT 136 Query: 121 AYQENELRNTRISMEQEHLRLQQDRISLNKELVQKERRYRQYERLYNKQLLAREDFLLAK 180 ++ L R+ EQ ++ I LNK K ++ + +++L L K Sbjct: 137 LKTQSSLLQARL--EQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTS--LIK 192 Query: 181 EDYESARDQLVVLDQRICQDDLFRSSQLESLDENIRNMKRSLSLVRERLENLK 233 E + + ++Q + + + + ++ ++ I + + + RL++ Sbjct: 193 EQFSTWQNQKYQKELNLDK----KRAERLTVLARINRYENLSRVEKSRLDDFS 241 Score = 56.8 bits (137), Expect = 7e-11 Identities = 40/188 (21%), Positives = 76/188 (40%), Gaps = 18/188 (9%) Query: 114 LQSEADLAYQENELR--NTRISMEQEHLRLQQDRISLNKELVQK----ERRYRQYERLYN 167 Q E +L + E RI+ + R+++ R+ L+ K + + E Y Sbjct: 203 YQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYV 262 Query: 168 KQLLAREDFLLAKEDYESARDQLVVLDQRICQ-DDLFRSSQLESL---DENIRNMKRSLS 223 + A + + K E +++ + LF++ L+ L +NI + L+ Sbjct: 263 E---AVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELA 319 Query: 224 LVRERLENLKVKAPVSGQLGNLEAQ-IGQSIAQGERIGQVITPE---LKVEAKIDEHYVE 279 ER + ++APVS ++ L+ G + E + VI PE L+V A + + Sbjct: 320 KNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETL-MVIVPEDDTLEVTALVQNKDIG 378 Query: 280 RVMPGLPA 287 + G A Sbjct: 379 FINVGQNA 386
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 461 bits (1187), Expect = e-162 Identities = 156/487 (32%), Positives = 244/487 (50%), Gaps = 50/487 (10%) Query: 1 MQTGTVLIVDDNKSVLTSLELLLEDEFERVETASNPNSILSVLDTMPVDLVILDMNFSAG 60 M T+L+ DD+ ++ T L L V SN ++ + DLV+ D+ Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMP-- 58 Query: 61 VNTGNEGLFWLRRIQEIAPELPVIMLTAYGDVELAVKALKSGAVDFILKPWDNEVLLEKI 120 L RI++ P+LPV++++A A+KA + GA D++ KP+D L+ I Sbjct: 59 ---DENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGII 115 Query: 121 HAALQAVEREKVKQKTDRNRPDRPVEPAMIIGHSAVMMKLIKVVTKVAKTDANILITGEN 180 AL +R D + ++G SA M ++ +V+ ++ +TD ++ITGE+ Sbjct: 116 GRALAEPKRRP------SKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGES 169 Query: 181 GTGKEMLAREIHRLSLRSRREMINVDMGAVSESLFESELFGHEKGAFTDARESRPGKFEA 240 GTGKE++AR +H R + ++M A+ L ESELFGHEKGAFT A+ G+FE Sbjct: 170 GTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQ 229 Query: 241 ASGSTLFLDEIGNLPVGLQAKLLAALQNREVTRLGSNRKIPIDIRLIAATNRDLPELVKQ 300 A G TLFLDEIG++P+ Q +LL LQ E T +G I D+R++AATN+DL + + Q Sbjct: 230 AEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQ 289 Query: 301 SLFREDLYYRINTIQIEIPPLRNRREDIPLFIDYFLKKYTALYNQPGLTIHPQAAAKLER 360 LFREDLYYR+N + + +PPLR+R EDIP + +F+++ +A ++ Sbjct: 290 GLFREDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKE-GLDVKRFDQEALELMKA 348 Query: 361 YDWPGNIRELQHTIEKAVILAEKNVIRAADLFIRPGKSVSFSDTPN-------------- 406 + WPGN+REL++ + + L ++VI + + S Sbjct: 349 HPWPGNVRELENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAV 408 Query: 407 ------------------------LGEVERKTIEAAITQNDGNLTAAAEQLGVSRQTLYN 442 L E+E I AA+T GN AA+ LG++R TL Sbjct: 409 EENMRQYFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRK 468 Query: 443 KLKRFNL 449 K++ + Sbjct: 469 KIRELGV 475
>PF06580#Sensor histidine kinase Length = 349 Score = 35.2 bits (81), Expect = 3e-04 Identities = 22/106 (20%), Positives = 43/106 (40%), Gaps = 19/106 (17%) Query: 246 LLSQVLI-NLLKNAMEALEGQDNGEISLTVKQPGTTTLIEVTDNGPGIPHDMLEDIFIPF 304 +L Q L+ N +K+ + L G+I L + T +EV + G + E Sbjct: 258 MLVQTLVENGIKHGIAQLP--QGGKILLKGTKDNGTVTLEVENTGSLALKNTKE------ 309 Query: 305 FTTKNKGTGIGLS-LSRQIVRMHGGE--LLVSSQPYSETRFTLSLP 347 TG GL + ++ ++G E + +S + + + +P Sbjct: 310 ------STGTGLQNVRERLQMLYGTEAQIKLSEKQ-GKVNAMVLIP 348
>PF04183#IucA / IucC family Length = 580 Score = 31.8 bits (72), Expect = 0.008 Identities = 19/82 (23%), Positives = 29/82 (35%), Gaps = 12/82 (14%) Query: 246 SLTIDTIRTVAYTRYFPDDIELRLFKENFVRQYLLKPERQQENLLTIRFNAPL---DTVP 302 L + Y + P E F L +P+ + L ++ P + Sbjct: 508 QLLAAVLSD--YMKKHPQ------MSERFALFSLFRPQIIRVVLNPVKLTWPDLDGGSRM 559 Query: 303 LPKPLNFTPENPDWFFTQETEA 324 LP L +NP W TQE E+ Sbjct: 560 LPNYLE-DLQNPLWLVTQEYES 580
>PF06580#Sensor histidine kinase Length = 349 Score = 29.1 bits (65), Expect = 0.007 Identities = 22/109 (20%), Positives = 39/109 (35%), Gaps = 12/109 (11%) Query: 48 LAIFVSLFVMSLLGLLLGWEKREAINLDGWKYKLYGKNKRLFLLYTGLVDGLLFTALLLF 107 L + +SL+GL+L R I GW + + + V ++ F Sbjct: 39 LHSMIFNIAISLMGLVLTHAYRSFIKRQGWLK--LNMGQIILRVLPACV----VIGMVWF 92 Query: 108 IGYCSGWIEMSYFQAKG------YLGIISISVVFMILSAFMNYRKYHFF 150 + S W +++ K I +VV + + Y +HFF Sbjct: 93 VANTSIWRLLAFINTKPVAFTLPLALSIIFNVVVVTFMWSLLYFGWHFF 141
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 32.6 bits (74), Expect = 0.002 Identities = 20/123 (16%), Positives = 44/123 (35%), Gaps = 10/123 (8%) Query: 492 YGKTLTMAGEHKQAVEVLNQAVSFYPNIIVYT-ALGDNYKILGRIEDAERAYLKAWYMNP 550 +G+++ A +V + LG + +G+ + A +Y M+ Sbjct: 42 LAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDI 101 Query: 551 SRFYPKYLLAKLYDETNQSEKAITVAKELLD--KEVKIESTAVREIQTE---MKNILKKH 605 + A+ + + + A+ L +E+ + T +E+ T M +K Sbjct: 102 KEPRFPFHAAECLLQKGELAE----AESGLFLAQELIADKTEFKELSTRVSSMLEAIKLK 157 Query: 606 KER 608 KE Sbjct: 158 KEM 160
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 37.4 bits (87), Expect = 4e-06 Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 8/90 (8%) Query: 35 QEIAEEIADSCGYSTATTKGMLDALAKVISKNLRYGYTVELDDLGSFSISLKS----RPV 90 Q++ ++A++ + + +DA+ +S L G V+L G+F + ++ R Sbjct: 5 QDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGRNP 64 Query: 91 MDKKEIRSWSVNFGNV-HFKGSKKLKNRLK 119 +EI+ + V FK K LK+ +K Sbjct: 65 QTGEEIK---IKASKVPAFKAGKALKDAVK 91
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 85.5 bits (212), Expect = 1e-25 Identities = 30/88 (34%), Positives = 52/88 (59%) Query: 2 NRAELIVALAEKSGLNKQKAKKVLASYMEIVTEKMSQNEEIVLIGFGTLIPRPQSSRMAR 61 N+ +LI +AE + L K+ + + + V+ +++ E++ LIGFG R +++R R Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGR 62 Query: 62 NPKTGTPVRIKARTTVKFKPGKFLLEAI 89 NP+TG ++IKA FK GK L +A+ Sbjct: 63 NPQTGEEIKIKASKVPAFKAGKALKDAV 90
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 48.7 bits (116), Expect = 2e-08 Identities = 54/308 (17%), Positives = 95/308 (30%), Gaps = 29/308 (9%) Query: 46 AANFGRLMAVFLWIYGFMSPVAGMIADRVNRKWLIVGSLFVWSFVTLMMGYCTTFNQIYF 105 A++G L+A++ + +PV G ++DR R+ +++ SL + +M +Y Sbjct: 42 TAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYI 101 Query: 106 LRALMGVSEALYIPAGLSLITDYHQGKTRSLAVG----IHMTGLYTGQALGGFGATVASA 161 R + G++ A + I D G R+ G G+ G LGG + Sbjct: 102 GRIVAGITGAT-GAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPH 160 Query: 162 FTWETTFHWFGIVGIAYSVILILFLKDKKDHIVHKIKEAGAAVENPVKGALKGMGMLFTN 221 F + + L + K + L Sbjct: 161 ----APFFAAAALNGLNFLTGCFLLPESH-------KGERRPLRREALNPLASFRWARGM 209 Query: 222 ISFWIILLYFATPSLPGWATKNWLPTLFSEN-LSIDMSEAGPLSTITIALSSFIGVIAGG 280 ++ F L G L +F E+ D + G L S + G Sbjct: 210 TVVAALMAVFFIMQLVGQVPAA-LWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITG 268 Query: 281 ILSDKWIQTNVRGRVYTGAIGLALTIPSLLLLGFGHNFLMIVGGGLCFGIGFGIFDANNM 340 ++ + G +G+ +LL F M + GI M Sbjct: 269 PVAARL------GERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLA-SGGIG----M 317 Query: 341 PILCQFIS 348 P L +S Sbjct: 318 PALQAMLS 325
>PF06580#Sensor histidine kinase Length = 349 Score = 167 bits (424), Expect = 9e-48 Identities = 60/225 (26%), Positives = 112/225 (49%), Gaps = 9/225 (4%) Query: 640 ILGALLIAAIIGIIYYFRNKNRQ------KQERNRRHIRELELRAIRSQMNPHFIFNALS 693 I +++ + ++Y+ + + Q + +E +L A+++Q+NPHF+FNAL+ Sbjct: 121 IFNVVVVTFMWSLLYFGWHFFKNYKQAEIDQWKMASMAQEAQLMALKAQINPHFMFNALN 180 Query: 694 SIQNLINRSANQEANKYLIDFSRLLRKVLATSEKKLVPLSDEIEQLELYLKLEQLRYPFS 753 +I+ LI +A + L S L+R L S + V L+DE+ ++ YL+L +++ Sbjct: 181 NIRALI-LEDPTKAREMLTSLSELMRYSLRYSNARQVSLADELTVVDSYLQLASIQFEDR 239 Query: 754 YSLTVDQNIEPDAIEIPGMLIQPFVENAVKHGIAPR-GTGEIIIRLSLQNQLLIIDITDD 812 N +++P ML+Q VEN +KHGIA G+I+++ + N + +++ + Sbjct: 240 LQFENQINPAIMDVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENT 299 Query: 813 GPGLKTEANGGFGIRAVTNEFEILKTLYNTEIGITIENRQEKESV 857 G G + N E L+ LY TE I + +Q K + Sbjct: 300 GSLALKNTKESTGT-GLQNVRERLQMLYGTEAQIKLSEKQGKVNA 343
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 75.6 bits (186), Expect = 8e-18 Identities = 34/132 (25%), Positives = 58/132 (43%), Gaps = 11/132 (8%) Query: 3 TKITAAIVDDEQGNRENLLRMLGTYCPQIKISAICSSVTEARTVLPEAKPDILFLDIRLG 62 T T + DD+ R L + L + I S+ + D++ D+ + Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDV---RITSNAATLWRWIAAGDGDLVVTDVVMP 58 Query: 63 DDTGFSLLESL----PDIPFEVIFVTAYDSY--AIQAIRFSALDYLLKPIDPEELTHAVD 116 D+ F LL + PD+P V+ ++A +++ AI+A A DYL KP D EL + Sbjct: 59 DENAFDLLPRIKKARPDLP--VLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116 Query: 117 KAVQVVLRKQEN 128 +A+ R+ Sbjct: 117 RALAEPKRRPSK 128
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 30.8 bits (69), Expect = 0.012 Identities = 25/168 (14%), Positives = 51/168 (30%), Gaps = 3/168 (1%) Query: 193 GLQRGVRGSEARHVTTAQYYRDLKRQTGKLETGVQQLQEEREEAEKQLKQVKKEIGTQKL 252 L++ + G+ + + L+ + L L++ E A +I T + Sbjct: 124 DLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEA 183 Query: 253 EAVKTEAKAALIAKVGSLL--GSGEIKELKQENRQLYEEVTTRDESIEKLQTMVQEQQKQ 310 E EA+ A + K S + + R +EK Sbjct: 184 EKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTA 243 Query: 311 HRKELTEVQAKHIEILNERDKEISRLNRIIEKACKWFPYFMELLRIEK 358 ++ ++A+ L R E+ + ++ L EK Sbjct: 244 DSAKIKTLEAE-KAALEARQAELEKALEGAMNFSTADSAKIKTLEAEK 290
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 30.2 bits (68), Expect = 0.009 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 6/67 (8%) Query: 12 APVPKDINLKEAIDKLRKEKNAVILAH------YYQTGDIQDIADYVGDSLALAQWAAKT 65 +P PK E I KL + VI + + G+I+ + + LA + A + Sbjct: 167 SPDPKGHVEAETIKKLVERGVIVIASGGGGVPVILEDGEIKGVEAVIDKDLAGEKLAEEV 226 Query: 66 TADIIVL 72 ADI ++ Sbjct: 227 NADIFMI 233
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 40.0 bits (93), Expect = 3e-05 Identities = 16/75 (21%), Positives = 24/75 (32%), Gaps = 6/75 (8%) Query: 364 YMKISTFGNHPVKTTTWIDNL---SKAGALNAHWNVIFDKTTNGHSI---TEGGSSGSPL 417 +S V + + I T GG+SGSP+ Sbjct: 182 PATMSNNAETQVNQNITVTGYPGDKPVATMWESKGKITYLKGEAMQYDLSTTGGNSGSPV 241 Query: 418 FNENKQIVGTLTGGN 432 FNE +++G GG Sbjct: 242 FNEKNEVIGIHWGGV 256
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 31.0 bits (70), Expect = 0.017 Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 2/57 (3%) Query: 11 LISALKNYSKEKFMADLMAGIIVGIVALPLAIAFGIASGVSPEKGLITAIIGGFIVS 67 ++ A + + LM + + LPLAI+ G SG + ++GG + + Sbjct: 959 VVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQ--NAVGIGVMGGMVSA 1013
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 63.7 bits (155), Expect = 3e-13 Identities = 29/181 (16%), Positives = 63/181 (34%), Gaps = 16/181 (8%) Query: 110 IDAKELSLEIAEQEQSKQKALYEKGGVTLSEMRNTEVKVTNARYDLENARINLEKMNIKA 169 ++ E + A++E L++ L ++R T + +L + I+A Sbjct: 275 LEQIESEILSAKEEYQLVTQLFKNE--ILDKLRQTTDNIGLLTLELAKNEERQQASVIRA 332 Query: 170 PFDGVIVDLPHYTTDVRVEQGKPMVGIM-DYARMYMDVNLPESAISYVKSDQPVFITHYT 228 P + L +T V + ++ I+ + + + + I ++ Q I Sbjct: 333 PVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEA 392 Query: 229 LPEDT---LKGVISELSPAISTETRT----------FKGKVMIQNNDLKLRPGMFVKADI 275 P L G + ++ + R + + N ++ L GM V A+I Sbjct: 393 FPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVIISIEENCLSTGNKNIPLSSGMAVTAEI 452 Query: 276 V 276 Sbjct: 453 K 453
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 605 bits (1561), Expect = 0.0 Identities = 212/1067 (19%), Positives = 462/1067 (43%), Gaps = 65/1067 (6%) Query: 4 IVKFAVSNPVTICMVVLAILLLGKISYDQLSVDLLPDLNNPRLFIELKAGERPPEEIEKQ 63 + F + P+ ++ + +++ G ++ QL V P + P + + + ++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 64 FVKNMESMAIRQSDVTQVSSV-VKAGSARITVEYTWTKDMDEAFLD----LQKAMNPFAQ 118 + +E ++ +SS AGS IT+ + D D A + LQ A Q Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 119 NKDITELKITQHDPNQSPVILIGM-SHQNITDMAELRKVAESYIRNELIRLEGVAEVTLS 177 ++ + I+ + S +++ G S T ++ S +++ L RL GV +V L Sbjct: 121 --EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLF 178 Query: 178 GQEESTLTIRTDPYKLDAFGLKIEDIASRIEANNQSISGGRV------SELGLQYLVKSS 231 G + + + I D L+ + L D+ ++++ N I+ G++ L + + Sbjct: 179 GAQYA-MRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQ 237 Query: 232 SLFGSEEDFENLIVGYKQVAKQETGTNASAGTATASGGKAPLFLREVATVTFENARPDNI 291 + F + E+F + + + G + L++VA V + I Sbjct: 238 TRFKNPEEFGKVTL-----------------RVNSDGS--VVRLKDVARVELGGENYNVI 278 Query: 292 VRINGKRSIGLSIYKEMRYNTVKVVDGVSRQLGVIEQALP-GYQFKVITNQGTFIKNAIG 350 RINGK + GL I N + + +L ++ P G + + F++ +I Sbjct: 279 ARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIH 338 Query: 351 EVKDSAVLGIVLAVVVLFVFLRRFGTTLIVSMAIPISIVATFNLMFFNGLTLNIMTLGGL 410 EV + I+L +V+++FL+ TLI ++A+P+ ++ TF ++ G ++N +T+ G+ Sbjct: 339 EVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGM 398 Query: 411 ALGAGMLVDNAIVVIESIFR-NQEKGLSIREAAIRGTSEVAGAVIASTLTTIVVFLPIVY 469 L G+LVD+AIVV+E++ R E L +EA + S++ GA++ + VF+P+ + Sbjct: 399 VLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAF 458 Query: 470 LHGASGELFKDQAWTVTFSLVSSLFVAILVIPMLYDRLMNTPPAPSREGSRIPSDAKKEA 529 G++G +++ + T+ ++ S+ VA+++ P L L+ + S + K Sbjct: 459 FGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL-------KPVSAEHHENKGGF 511 Query: 530 GNEAGRGIQLL--GYSHLLRSLIGHRWIVISAAVGLMVLTVFLLPFIGTEFMPRMESKAF 587 Y++ + ++G + ++ V L + + F+P + F Sbjct: 512 FGWFNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVF 571 Query: 588 TVVVKMPEGTKLERTSSAVANLEELLYTITGDSLLTVYSHIGEGSGSENAIFEGENTAMM 647 ++++P G ERT + + + ++ +V++ G + +N M Sbjct: 572 LTMIQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSG-----QAQNAGMA 626 Query: 648 KVVL------SSECRVAPEAVIEQFVHTAENPDGLELTIKQEENSLSSLLGSEGAPIVVE 701 V L + + A + + + DG + + + +++ Sbjct: 627 FVSLKPWEERNGDENSAEAVIHRAKMELGKIRDGFVIPFNMPA-IVELGTATGFDFELID 685 Query: 702 VKGEELDEIADITEEVKSRMQEVPG-LYNIVSSIEDGAPEITISINRTIAGINNLSVSTV 760 G D + ++ + P L ++ + + + + +++ A +S+S + Sbjct: 686 QAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDI 745 Query: 761 IEQLKQQLSGKEAGKMEYRGEMRDIVIKVPD---IPLRALGDLVIKNGEQEF-RLREIAT 816 + + L G RG ++ + ++ + + L +++ E T Sbjct: 746 NQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTT 805 Query: 817 FGESQAPKEIYRRNQNRISKVMANMDAGKSLDKVAEEIRQAMKGIELPVNYSVTVTGEEE 876 + R N ++ G S + +LP TG Sbjct: 806 SHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAMALMENLAS--KLPAGIGYDWTGMSY 863 Query: 877 KRQESMNSLLFALALSVILVYMVLASQFESLLHPFTILLTIPLAVVGAILLFFLTGTTIN 936 + + S N +A+S ++V++ LA+ +ES P +++L +PL +VG +L L + Sbjct: 864 QERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKND 923 Query: 937 MMGVIGIVMLVGIAVNNSIILVDRINQLK-ADGTGLTDAIVQAGQQRIRPIIMTTLTTIL 995 + ++G++ +G++ N+I++V+ L +G G+ +A + A + R+RPI+MT+L IL Sbjct: 924 VYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFIL 983 Query: 996 ALLPMTFSFGEGASLRSPMAIAVIGGLVTSTLMSLMVIPCVYYVLEK 1042 +LP+ S G G+ ++ + I V+GG+V++TL+++ +P + V+ + Sbjct: 984 GVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFVVIRR 1030
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 456 bits (1174), Expect = e-141 Identities = 212/1066 (19%), Positives = 432/1066 (40%), Gaps = 78/1066 (7%) Query: 2 NFLLHRRITICMLFIALTMLGYVSYKQLPVELLPNAELPMLFVQVSSQ-QDMDPSYVESE 60 NF + R I +L I L M G ++ QLPV P P V VS+ D V+ Sbjct: 3 NFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPA--VSVSANYPGADAQTVQDT 60 Query: 61 IVIPLEGAISSIGGVDKIQSTVDS-RQSTIQIDFKNTVNFKITSLKLQEKVNELAATFPD 119 + +E ++ I + + ST DS TI + F++ + I +++Q K+ P Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 120 GFNVQLQKVDVGQMANNF-MVLQVRGSGGV---DRVRNIVDKEIRSDLENVDGVASVNIY 175 VQ Q + V + ++++ MV D + + V ++ L ++GV V ++ Sbjct: 121 E--VQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLF 178 Query: 176 GGREKAIEIRLNPEACKALNLTPSSISGLLTQNTQDKA--FVGFANEPDSKYF---IHVN 230 G + A+ I L+ + LTP + L A +G + I Sbjct: 179 GA-QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQ 237 Query: 231 ALYSKVSDLENIVVA----PGPVLLKDVATVFFDLKEETSYSRVNGKDAVSVALMSDSQA 286 + + + + V LKDVA V + +R+NGK A + + + A Sbjct: 238 TRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGA 297 Query: 287 NLIDLSHRAVEAIDRLNEKLAYLDVEVVVQENTAETMENNIDQIINLALVGGLLAILILW 346 N +D + + L ++V+ +T ++ +I +++ +L L+++ Sbjct: 298 NALDTAKAIKAKLAELQPFFPQ-GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMY 356 Query: 347 LFLKNLRLVFFIALSIPISVYTAFNFFYAFGITINSLTLVGMALAIGMLLDNSVVVLENI 406 LFL+N+R +++P+ + F AFG +IN+LT+ GM LAIG+L+D+++VV+EN+ Sbjct: 357 LFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV 416 Query: 407 YRLSASGCTPERSVT-QGTKEVWRSIVAATLTTVTVFLPFVFSDNFMIKLIGHHVGVSII 465 R+ P + T + ++ ++V + VF+P F + ++I+ Sbjct: 417 ERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIY-RQFSITIV 475 Query: 466 STLTISLFVALLFIPMATYLLLRK--------KNGQSVFYEKVSIVQRPVQVYLVLLKTC 517 S + +S+ VAL+ P LL+ K G ++ V Y + Sbjct: 476 SAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTT--FDHSVNHYTNSVGKI 533 Query: 518 MRNPGVTIFGAIIVLFVTLILSIYMNVQQMKDVNTDRINIYVTMPTGSTLDNADKLVKVI 577 + + G + +++ ++L + + + + + + +P G+T + K++ + Sbjct: 534 LGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQV 593 Query: 578 EARL--DSFPGRKDLISRINEKNAVLTLNFTDDFVK-KAGSKMAEYKATVQATVSNIQGA 634 + + + + + N FV K + + + +A + + Sbjct: 594 TDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKME 653 Query: 635 EISVEESMSGGGGGGGAGGGAMAGLGNFMRLLGIGENRERIVIKGSDFDVMQLVAEDFRY 694 + + A+ LG G + E I G D + Sbjct: 654 LGKIRDGF-----VIPFNMPAIVELGT-----ATGFDFELIDQAGLGHDALTQARNQLLG 703 Query: 695 YLDEQ-EFIRGSRVSYNRRQPEIHLDFDPILLTSYEITRANISSGL-AALNPEYSSGTSF 752 + + R + + L+ D + ++ ++I+ + AL Y + F Sbjct: 704 MAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVN--DF 761 Query: 753 KIGEDTYDIIIRNDIPGDEENEEEEAETEKKDKTVDDLRRVQIQNANGGLHDLQDLASVN 812 + ++ D K +D+ ++ +++ANG + + + Sbjct: 762 IDRGRVKKLYVQAD--------------AKFRMLPEDVDKLYVRSANGEMVPFSAFTTSH 807 Query: 813 YGRGRTRIMRVNQDKQIEVFYNFSKDVQSSKDLLEGYRSDIDQLVANYNLPSGVAVEV-- 870 + G R+ R N +E+ + S + ++ L + LP+G+ + Sbjct: 808 WVYGSPRLERYNGLPSMEIQGEAAPGTSSGD-----AMALMENLAS--KLPAGIGYDWTG 860 Query: 871 --FHEEDEFADFKFLILAAFILIFMILASVFESLVTPFVLLFSIPLAAIGSLLALLLTSN 928 + E L+ +F+++F+ LA+++ES P ++ +PL +G LLA L N Sbjct: 861 MSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLF-N 919 Query: 929 SLLNANTLTGFLILLGVVVNNGIILIDYSN-ILRKRGYRRNRALMTAGLSRIRPILITSI 987 + + G L +G+ N I++++++ ++ K G A + A R+RPIL+TS+ Sbjct: 920 QKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSL 979 Query: 988 TTIVAMFPLAMGDSEYAGAIGAPFAITVIGGLTFSALLTLILIPTV 1033 I+ + PLA+ + +G I V+GG+ + LL + +P Sbjct: 980 AFILGVLPLAISNGAGSG-AQNAVGIGVMGGMVSATLLAIFFVPVF 1024 Score = 95.7 bits (238), Expect = 1e-21 Identities = 97/528 (18%), Positives = 205/528 (38%), Gaps = 53/528 (10%) Query: 519 RNPGVTIFGAIIVLFVTLILSIYMNVQQMKDVNTDRINIYVTMPTGSTLDNADKLVKVIE 578 R P AII++ + + + V Q + +++ P D + +VIE Sbjct: 7 RRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVTQVIE 66 Query: 579 ARLDSFPGRKDLISR-INEKNAVLTLNFTDDFVKKAGSKMAEYKATVQATVSNIQGAEIS 637 ++ + S + + +TL F A VQ + +Q A Sbjct: 67 QNMNGIDNLMYMSSTSDSAGSVTITLTFQSG--------TDPDIAQVQVQ-NKLQLATPL 117 Query: 638 VEESMSGGGGGGGAGGGAMAGLGNFMRLLGIGENRERIVIKGSDFDVMQLVAEDFRYYLD 697 + + + G M + +N SD+ + D Sbjct: 118 LPQEVQQQGISVEKSSS-----SYLMVAGFVSDNPGTTQDDISDYVASNVK--------D 164 Query: 698 EQEFIRG-SRVSYNRRQPEIHLDFDPILLTSYEITRANISSGLAALNPEYSSGTSFKIGE 756 + G V Q + + D LL Y++T ++ + L N + ++G ++G Sbjct: 165 TLSRLNGVGDVQLFGAQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAG---QLGG 221 Query: 757 DTYDIIIRNDIPGDEENEEEEAETEKKDKTVDDLRRVQIQ-NANGGLHDLQDLASVNYGR 815 +PG + N A+T K ++ +V ++ N++G + L+D+A V G Sbjct: 222 TPA-------LPGQQLNASIIAQTRFK--NPEEFGKVTLRVNSDGSVVRLKDVARVELGG 272 Query: 816 GRTRIMRVNQDKQIEVFYNFSKDVQSSKDLLEGYRSDIDQLVANYNLPSGVAVEVFHEED 875 ++ K ++ D + ++ + +L P G+ V ++ Sbjct: 273 ENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPF--FPQGMKVLYPYDTT 330 Query: 876 EF-----ADFKFLILAAFILIFMILASVFESLVTPFVLLFSIPLAAIGSLLALLLTSNSL 930 F + + A +L+F+++ +++ + ++P+ +G+ L S+ Sbjct: 331 PFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSI 390 Query: 931 LNANTLTGFLILLGVVVNNGIILIDYSNILR--KRGYRRNRALMTAGLSRIRPILITSIT 988 N T+ G ++ +G++V++ I++++ N+ R + +S+I+ L+ Sbjct: 391 -NTLTMFGMVLAIGLLVDDAIVVVE--NVERVMMEDKLPPKEATEKSMSQIQGALVGIAM 447 Query: 989 TIVAMF-PLA-MGDSEYAGAIGAPFAITVIGGLTFSALLTLILIPTVC 1034 + A+F P+A G S GAI F+IT++ + S L+ LIL P +C Sbjct: 448 VLSAVFIPMAFFGGST--GAIYRQFSITIVSAMALSVLVALILTPALC 493 Score = 84.9 bits (210), Expect = 2e-18 Identities = 65/519 (12%), Positives = 175/519 (33%), Gaps = 46/519 (8%) Query: 1 MNFLLHRRITICMLFIALTMLGYVSYKQLPVELLPNAELPMLFVQV-----SSQQDMDPS 55 + +L +++ + V + +LP LP + + + ++Q+ Sbjct: 530 VGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKV 589 Query: 56 YVESEIVI-----PLEGAISSIGGVDKIQSTVDSRQSTIQI-DFKNTVNFKITSLKLQEK 109 + ++ ++ G ++ + + + ++ + ++ + + Sbjct: 590 LDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHR 649 Query: 110 VNELAATFPDGFNVQLQK---VDVGQMANNFMVLQVRGSGGVDRVRNIVDKEIRSDLENV 166 DGF + V++G L + G D + ++ + ++ Sbjct: 650 AKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHP 709 Query: 167 DGVASVNIYG-GREKAIEIRLNPEACKALNLTPSSISGLLTQNTQDKAFVGFANEPDSKY 225 + SV G ++ ++ E +AL ++ S I+ ++ +V + Sbjct: 710 ASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTAL-GGTYVNDFIDRGRVK 768 Query: 226 FIHVNA---LYSKVSDLENIVVAP---GPVLLKDVATVFFDLKEETSYSRVNGKDAVSVA 279 ++V A D++ + V V T R+ + + Sbjct: 769 KLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTS----HWVYGSPRLERYNGLPSM 824 Query: 280 LMSDSQANLIDLSHRAVEAIDRLNEKL---AYLDVEVVVQENTAETMENNIDQIINLALV 336 + A A+ ++ L KL D M N A Sbjct: 825 EIQGEAAPGTSSG-DAMALMENLASKLPAGIGYDWT---------GMSYQERLSGNQAPA 874 Query: 337 GGLLAILILWLFL----KNLRLVFFIALSIPISVYTAFNFFYAFGITINSLTLVGMALAI 392 ++ ++++L L ++ + + L +P+ + F + +VG+ I Sbjct: 875 LVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTI 934 Query: 393 GMLLDNSVVVLENIY-RLSASGCTPERSVTQGTKEVWRSIVAATLTTVTVFLPFVFSDNF 451 G+ N+++++E + G + + R I+ +L + LP S+ Sbjct: 935 GLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGA 994 Query: 452 MIKLIGHHVGVSIISTLTISLFVALLFIPMATYLLLRKK 490 + VG+ ++ + + +A+ F+P+ ++++R+ Sbjct: 995 GSGAQ-NAVGIGVMGGMVSATLLAIFFVPVF-FVVIRRC 1031
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 29.0 bits (65), Expect = 0.004 Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 4/34 (11%) Query: 59 PYELTDINVLQGNGTIQVDQIHRIQEIDKGIRVF 92 P+ + DI +G +QV I+E D ++F Sbjct: 329 PFTINDIYAAGNSGDLQV----TIKEADGSTQIF 358
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 28.4 bits (63), Expect = 0.029 Identities = 11/55 (20%), Positives = 17/55 (30%), Gaps = 1/55 (1%) Query: 32 PDATLQEEVLIVSPTPEEQPSVPEQQHVEA-QPQPVPPKKYVTEKDVVYESFKKL 85 P A +V P PE +P + +P P K + + K Sbjct: 58 PQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKR 112 Score = 27.6 bits (61), Expect = 0.045 Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 1/48 (2%) Query: 32 PDATLQEEVLIVSPTPEEQP-SVPEQQHVEAQPQPVPPKKYVTEKDVV 78 P V +V+P E P +V +P+P P K+ Sbjct: 39 PAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAP 86
>BICOMPNTOXIN#Staphylococcal bi-component toxin signature. Length = 315 Score = 30.3 bits (68), Expect = 0.014 Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 7/95 (7%) Query: 243 LVNNASNLISITNILNFFKSKKRKTTYDTISNYIGYIED-TFLIHKVERYD-----IRGK 296 L+ NA +I + K T D SN G ++ F K ++Y+ ++ + Sbjct: 23 LLENAKAANDTEDIGKGSDIEIIKRTEDKTSNKWGVTQNIQFDFVKDKKYNKDALILKMQ 82 Query: 297 GTISGNYKYY-INDLAYKNYLYPGFAYGIGYKLEN 330 G IS YY + + F Y IG K + Sbjct: 83 GFISSRTTYYNYKKTNHVKAMRWPFQYNIGLKTND 117
>PF05704#Capsular polysaccharide synthesis protein Length = 307 Score = 25.6 bits (56), Expect = 0.041 Identities = 10/14 (71%), Positives = 13/14 (92%) Query: 69 FSDVLRTFLVCQYG 82 FSD+LR FL+C+YG Sbjct: 134 FSDILRLFLLCKYG 147
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 29.6 bits (66), Expect = 0.043 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 4/71 (5%) Query: 88 EVMKDLLKDPEANKELLAPHKVDTSGYEKQVKEEQTTEKTEQTEHKQEEMEKKQE----Q 143 EV K+ + +AN + + + E Q E + T E+ E + E EK QE Sbjct: 1067 EVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVT 1126 Query: 144 NQESPQQAQGR 154 +Q SP+Q Q Sbjct: 1127 SQVSPKQEQSE 1137
>BONTOXILYSIN#Bontoxilysin signature. Length = 1196 Score = 29.9 bits (67), Expect = 0.013 Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 2/86 (2%) Query: 82 LDNVEDIFFAGKD--FDRDTPVEFINDDIKQLNKFIEEGRYFHTQIKQEGVILYNSGKYK 139 L+ ++ + G D F P F N K E+ + + + + N K + Sbjct: 260 LNIIDLLISGGVDLEFINTNPYWFTNSYFPNSIKMFEKYKNIYKTEIEGNNAIGNDIKLR 319 Query: 140 LSRRRKLNFDEIKKQAQDYFNEKFEK 165 L ++ ++N +I +YF + F Sbjct: 320 LKQKFQINVQDIWNLNLNYFCQSFNS 345
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 109 bits (275), Expect = 5e-27 Identities = 46/170 (27%), Positives = 83/170 (48%), Gaps = 10/170 (5%) Query: 1129 KPTLLIVDDNADFREFMKLSLSGL-YHVFTADDGEQAWKVILEELPDMVVSDVMMPVTDG 1187 T+L+ DD+A R + +LS Y V + W+ I D+VV+DV+MP + Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 1188 IVLCKRIKQDIRTSHIPVILLTAKSAEESKMTGLEAGADDYIGKPFNMDMLILKIQHLVE 1247 L RIK+ +PV++++A++ + + E GA DY+ KPF++ LI I + Sbjct: 63 FDLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 1248 MKKRLQKQFMQSSQTGIQLADIPISSMDEQLMRKAIAYIEEQIANPELSV 1297 KR + SQ G+ L + S+ +++ R ++ +L++ Sbjct: 121 EPKRRPSKLEDDSQDGMPL--VGRSAAMQEIYRVL-----ARLMQTDLTL 163
>BINARYTOXINB#Binary toxin B family signature. Length = 764 Score = 36.6 bits (84), Expect = 5e-04 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 11/86 (12%) Query: 254 DLVTIKNFPEKFPSNEAY---ATWEGEIEPTESGVHHFKLHYAGYTKVFIDGREVVAERW 310 DL + E PS Y A W G I+ +S + F + +++D +EV+ + Sbjct: 71 DLSIPSSELENIPSENQYFQSAIWSGFIKVKKSDEYTFATSADNHVTMWVDDQEVINKAS 130 Query: 311 RTAWNPNDYKTKVRLEKGKRYPIRIE 336 + K+RLEKG+ Y I+I+ Sbjct: 131 NS--------NKIRLEKGRLYQIKIQ 148
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 33.2 bits (76), Expect = 0.005 Identities = 21/115 (18%), Positives = 39/115 (33%), Gaps = 4/115 (3%) Query: 531 AALAKQAKEDPQALVEWVKKNITINDALNPQRIPVMPMGVFKARIADKGSRNIFFVAVAR 590 L + E + I + L P + K D G R ++R Sbjct: 140 GHLIGVETGSLATIAEET---VIIAEDLTPSDTAQLNKQFVKGFATDIGGRTSHSAIMSR 196 Query: 591 SLGIPARIEPVARKVQYMKDGNWMDVDFEAAVQTTAKQGKVVASYSPIKALQDPK 645 SL IPA + + ++ G+ + VD + + V +Y +A + + Sbjct: 197 SLEIPA-VVGTKEVTEKIQHGDMVIVDGIEGIVIVNPTEEEVKAYEEKRAAFEKQ 250
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 46.2 bits (110), Expect = 1e-09 Identities = 22/88 (25%), Positives = 45/88 (51%), Gaps = 8/88 (9%) Query: 38 ELCDLISLSSTASPGDVRLILDSLIEVMKRSLGKGEVVQVGELGNFQLQFGSSGTA---- 93 +L ++ ++ + D +D++ + L KGE VQ+ GNF+++ ++ Sbjct: 6 DLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGRNPQ 65 Query: 94 TKKEFNQSLIKSKRIV-FRPGKVLREAV 120 T +E IK+ ++ F+ GK L++AV Sbjct: 66 TGEEIK---IKASKVPAFKAGKALKDAV 90
>FLGFLGJ#Flagellar protein FlgJ signature. Length = 313 Score = 43.9 bits (103), Expect = 6e-08 Identities = 39/153 (25%), Positives = 67/153 (43%), Gaps = 25/153 (16%) Query: 13 PAAEKAGGTYDMNLVVILAQGALESGWGTSHLAREH----HNYFGIMGYGASNG------ 62 A+ A + +ILAQ ALESGWG + RE+ +N FG+ G G Sbjct: 158 LPAQLASQQSGVPHHLILAQAALESGWGQRQIRRENGEPSYNLFGVKASGNWKGPVTEIT 217 Query: 63 ---YWHGERAKVEGTGGVHYFRHYAGVEFSFLDFARLIRTGYRH-AWSFSRQPEAYAKEI 118 Y +GE KV+ FR Y+ + D+ L+ R+ A + + E A+ + Sbjct: 218 TTEYENGEAKKVKAK-----FRVYSSYLEALSDYVGLLTRNPRYAAVTTAASAEQGAQAL 272 Query: 119 AYSPYISEQNGDNRDLYRRNLIAITEKIITLKD 151 + Y ++ + Y R L + +++ ++ D Sbjct: 273 QDAGYATDPH------YARKLTNMIQQMKSISD 299
>FLAGELLIN#Flagellin signature. Length = 507 Score = 32.3 bits (73), Expect = 0.003 Identities = 19/112 (16%), Positives = 35/112 (31%), Gaps = 3/112 (2%) Query: 108 SDNMDDDNTSGGINIHVGNGRKAGVAGNLGGTSVLSNLDVSEEDTKNLSESIKKLSGAAE 167 ++N + +N AG L G ++ + S T ++ A Sbjct: 360 ANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINEDAAAAKKSTAN 419 Query: 168 QISKMAELTEATQKYLEQLSGMSENMERFSHVTNSLTNVSDTLLNSYKSITD 219 ++ + A K S + RF +L N L ++ I D Sbjct: 420 PLAS---IDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIED 468
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 807 bits (2085), Expect = 0.0 Identities = 297/1033 (28%), Positives = 521/1033 (50%), Gaps = 36/1033 (3%) Query: 4 ISETSINRPVLSTVMMLVILLFGMIGYKFLGVREFPSVDQPIISVNVSYPGANAEVIMNQ 63 ++ I RP+ + V+ +++++ G + L V ++P++ P +SV+ +YPGA+A+ + + Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 64 ITEPLEQNINGIPGIRSLSSVS-SQGSSRITVEFELSVDMETAANDVRDKVSRAQRYLPR 122 +T+ +EQN+NGI + +SS S S GS IT+ F+ D + A V++K+ A LP+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 123 DCDPPTVSKADADATPIMQIGVQSN--RRSLMELSEIAELTVKERLQTISNVSGVDIWGQ 180 + +S + ++ +M G S+ + ++S+ VK+ L ++ V V ++G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 181 KRYSMRLWLDPIKMAGYGVTPLDVKNAVDAENVELPSGSI------EGNTIDLSIRTLGL 234 +Y+MR+WLD + Y +TP+DV N + +N ++ +G + G ++ SI Sbjct: 181 -QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 235 MHTAKEFDDLIVKEDGN-NIVRFKDVGRAELAPEDLRSILRKNGEPMVICVIVPQPGANH 293 +EF + ++ + + ++VR KDV R EL E+ I R NG+P I GAN Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 294 IEIADEAYNRIEQLKKDLPEDVSIEMIYDNTRFIRASIYEVEETIYVALALVVLIIFLFL 353 ++ A ++ +L+ P+ + + YD T F++ SI+EV +T++ A+ LV L+++LFL Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 354 RDWRVTLVPCVVIPVSLVGAFFVMYISGFSINVLTMLAVVLSVGLVVDDAIVVAENIY-V 412 ++ R TL+P + +PV L+G F ++ G+SIN LTM +VL++GL+VDDAIVV EN+ V Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 413 RIEQGMNPKEAGIEGSKEIFFAVISTTVTLVSVFLPIVFMEGMTGRLFKEFSIVIAGSVT 472 +E + PKEA + +I A++ + L +VF+P+ F G TG ++++FSI I ++ Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 473 ISSFVALTFTPMLATKLLRKR-----EKKNWLYVKTEPFFEGLNTIYSRSLNYFLSHKWW 527 +S VAL TP L LL+ E K + F+ Y+ S+ L Sbjct: 480 LSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539 Query: 528 AIPIVVVMFGSIGYFWKTIRSELSPLEDRSSISINMRAQEGATFEFIRDYSDRIAELA-D 586 + I ++ + + + S P ED+ ++ GAT E + D++ + Sbjct: 540 YLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLK 599 Query: 587 SIAPERK-------FLTNRASSSNANISVILPDIKER---ERSQMEIAEKLSAAVRKETQ 636 + + F + + + V L +ER E S + + + K Sbjct: 600 NEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRD 659 Query: 637 ARAFVQQQSTF--GGRRGGMPVQYV-LQAPSLEKLAEHLPTFMQKVNESPIFQMADVNLK 693 G G + + + L + + + P + V Sbjct: 660 GFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHP-ASLVSVRPN 718 Query: 694 FT--KPETRIEIDRDKASSLGVSTRNIAQTLQYALSGQRMGYFYMNGKQYQILGEINRQQ 751 + ++E+D++KA +LGVS +I QT+ AL G + F G+ ++ + + + Sbjct: 719 GLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKF 778 Query: 752 RNTPLDLKSIYVRSDNGSMIQLDNMVSLLEDVAPPQLYRYNRFVSATVSSGLNKGYTIGD 811 R P D+ +YVRS NG M+ + P+L RYN S + G + GD Sbjct: 779 RMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGD 838 Query: 812 GLDEMDRIAAETLDGSFRTALSGESKEFRESSSSLMFAMILALLMIYLVLAAQFESFKDP 871 + M+ +A++ L +G S + R S + + ++ ++++L LAA +ES+ P Sbjct: 839 AMALMENLASK-LPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIP 897 Query: 872 LVVMFTVPLAIAGALMFMSYSGITMNIFSQIGIIMLIGLVAKNGILIVEFANQRQEA-GL 930 + VM VPL I G L+ + +++ +G++ IGL AKN ILIVEFA E G Sbjct: 898 VSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGK 957 Query: 931 SMAEAIRSASTQRLRPILMTSVSTILGLVPLVYASGEGAQGRIAMGVAVVGGMLVSTFLT 990 + EA A RLRPILMTS++ ILG++PL ++G G+ + A+G+ V+GGM+ +T L Sbjct: 958 GVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLA 1017 Query: 991 LFIVPAMYSFIST 1003 +F VP + I Sbjct: 1018 IFFVPVFFVVIRR 1030
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 43.7 bits (103), Expect = 9e-07 Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 1/75 (1%) Query: 68 VISTGSIIPDEEV-DLSFESSGKVVNIYFSEGTHVKAGDLLAKINDKPLQAQLRKLEAQI 126 + G + ++ + V I EG V+ GD+L K+ +A K ++ + Sbjct: 84 ATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSL 143 Query: 127 PLAKDRVYRQRTLLE 141 A+ R + L Sbjct: 144 LQARLEQTRYQILSR 158 Score = 39.8 bits (93), Expect = 1e-05 Identities = 22/118 (18%), Positives = 47/118 (39%), Gaps = 10/118 (8%) Query: 115 LQAQLRKLEAQIPLAKDRVYRQRTLLEKDAVSQEAYEQVTTEYEKLMADIDLVKANILQT 174 ++QL ++E++I AK+ L + + + + Q T L ++ + + Sbjct: 271 YKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLR--QTTDNIGLLTLELAKNEERQQAS 328 Query: 175 ELRAPFDGII-GLRSVSEGAYVSPTTVITKLTKISP----LKIEFSIPERYANDVKNG 227 +RAP + L+ +EG V+ L I P L++ + + + G Sbjct: 329 VIRAPVSVKVQQLKVHTEGGVVTTA---ETLMVIVPEDDTLEVTALVQNKDIGFINVG 383 Score = 35.2 bits (81), Expect = 4e-04 Identities = 13/61 (21%), Positives = 32/61 (52%) Query: 115 LQAQLRKLEAQIPLAKDRVYRQRTLLEKDAVSQEAYEQVTTEYEKLMADIDLVKANILQT 174 + A++ + E + K R+ +LL K A+++ A + +Y + + ++ + K+ + Q Sbjct: 219 VLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQI 278 Query: 175 E 175 E Sbjct: 279 E 279
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 46.2 bits (109), Expect = 2e-07 Identities = 36/251 (14%), Positives = 86/251 (34%), Gaps = 10/251 (3%) Query: 26 QLEEQRKKALAEVEMTNQLLQETTQTAQNTLNRLNLLSQQILSRKKVISLLNQELGELDN 85 ++ + A++E + + + L + +RK + + Sbjct: 113 SKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFST 172 Query: 86 QITASR----REINKLEKELDGKRENYGKSMQSMYKRRSSQDKLLFILSADNFAQSMRRM 141 +A E LE + +M + L +A ++ Sbjct: 173 ADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEK 232 Query: 142 RYLREYADWQKLQAT--EIIDKQTEITLKQKELEKTRSEKNALLGTREQESQKLQTEESS 199 A + ++ + +Q ELEK + + L+ E+++ Sbjct: 233 ALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAA 292 Query: 200 QKAEVQQLNKKQKQLKEELRKKQQQANALNRQIEKQIAEEIARAEAE---AKAARERERR 256 +AE L + Q Q+ R+ ++ +R+ +KQ+ E + E + ++A+R+ RR Sbjct: 293 LEAEKADL-EHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRR 351 Query: 257 AREKAKAEGKE 267 + ++ K+ Sbjct: 352 DLDASREAKKQ 362 Score = 30.8 bits (69), Expect = 0.013 Identities = 49/258 (18%), Positives = 91/258 (35%), Gaps = 8/258 (3%) Query: 18 GQKSARVRQLEEQRKKALAEVEMTNQLLQETTQTAQNTLNRLNLLSQQILSRKKVISLLN 77 + K AE E + + +N S +I + + + L Sbjct: 235 EGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALE 294 Query: 78 QELGELDNQITASRREINKLEKELDGKRENYGK---SMQSMYKRRSSQDKLLFILSADNF 134 E +L++Q L ++LD RE + Q + ++ + L D Sbjct: 295 AEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRD-L 353 Query: 135 AQSMRRMRYLREYADWQKLQATEIIDKQTEITLKQKELEKTRSEKNALLGTREQESQKLQ 194 S + L A+ QKL+ I + +++L+ +R K + E+ + KL Sbjct: 354 DASREAKKQLE--AEHQKLEEQNKISE-ASRQSLRRDLDASREAKKQVEKALEEANSKLA 410 Query: 195 TEESSQKAEVQQLNKKQKQLKEELRKKQQQANALNRQIEKQIAEEIARAEAEAKAARERE 254 E K + +K+ E K + +A AL ++ KQ AEE+A+ A + + Sbjct: 411 ALEKLNKELEESKKLTEKEKAELQAKLEAEAKALKEKLAKQ-AEELAKLRAGKASDSQTP 469 Query: 255 RRAREKAKAEGKEPVKEP 272 GK + Sbjct: 470 DAKPGNKAVPGKGQAPQA 487 Score = 29.3 bits (65), Expect = 0.033 Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 14/135 (10%) Query: 144 LREYADWQKLQATEIIDKQTEITLKQKELEKTRSEKNALLGTREQESQKLQTEESSQKAE 203 +E +E K E+ ++ +LEK + + L+ E+++ A Sbjct: 97 AKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAAR 156 Query: 204 VQQL--------------NKKQKQLKEELRKKQQQANALNRQIEKQIAEEIARAEAEAKA 249 L + K K L+ E + + L + +E + A + Sbjct: 157 KADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTL 216 Query: 250 ARERERRAREKAKAE 264 E+ A KA E Sbjct: 217 EAEKAALAARKADLE 231
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 29.3 bits (65), Expect = 0.023 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 2/64 (3%) Query: 126 NKRYVAERYADLKGQTPIEFNFYNLQALFTNHIFLPGKQEIDPKQYKRFKLNQEGSTAEI 185 NK+ + E ++ G+ P++ + ++ L N I L GK+EID + K + L E Sbjct: 387 NKKSITEHEGEI-GKIPLKLDHLRIEELKENGIILKGKKEIDNGK-KYYLLESNNQVYEF 444 Query: 186 KVKD 189 ++ D Sbjct: 445 RISD 448
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 38.8 bits (90), Expect = 2e-05 Identities = 25/101 (24%), Positives = 37/101 (36%), Gaps = 6/101 (5%) Query: 385 ELFPDAPEYYFYLGIAYYQQEKYQEALNTYYAGINIIPTDNPRLKSDFYGQIGDIYYQMK 444 E+ D E + L YQ KY++A + A + D S F+ +G M Sbjct: 30 EISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYD-----SRFFLGLGACRQAMG 84 Query: 445 QMDQTYKAYDEALKYNDNNIVVLNNYAYFLSLDKKDLKKAE 485 Q D +Y D +A L K +L +AE Sbjct: 85 QYDLAIHSYSYGAIM-DIKEPRFPFHAAECLLQKGELAEAE 124 Score = 35.7 bits (82), Expect = 2e-04 Identities = 20/85 (23%), Positives = 34/85 (40%) Query: 83 LYELSSFYVQMNRPEKAVEMLQRAVANSTDNFTYRMALATISRNLGMYGEAAEEYEKLVK 142 LY L+ Q + E A ++ Q + + + L + +G Y A Y Sbjct: 39 LYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAI 98 Query: 143 AFPGKPELNYYLAEALTQEGETGKA 167 +P ++ AE L Q+GE +A Sbjct: 99 MDIKEPRFPFHAAECLLQKGELAEA 123 Score = 33.4 bits (76), Expect = 0.001 Identities = 18/144 (12%), Positives = 37/144 (25%), Gaps = 39/144 (27%) Query: 313 QTLLEQHPEDTDLKQMYGSLLIAQGKTDEARFQFQLITEMEPENAAAWQQLLNMSLKAED 372 L E + + GK ++A FQ + ++ + Sbjct: 26 AMLNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYD---------------- 69 Query: 373 IPEVIRICTKCQELFPDAPEYYFYLGIAYYQQEKYQEALNTYYAGINIIPTDNPRLKSDF 432 ++ LG +Y A+++Y G + PR F Sbjct: 70 ------------------SRFFLGLGACRQAMGQYDLAIHSYSYGAIMDI-KEPR----F 106 Query: 433 YGQIGDIYYQMKQMDQTYKAYDEA 456 + Q ++ + A Sbjct: 107 PFHAAECLLQKGELAEAESGLFLA 130
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 29.3 bits (66), Expect = 0.002 Identities = 9/46 (19%), Positives = 26/46 (56%) Query: 30 EVADCLSQISTVSRADVYAVLTDLAGVLADYMAQGRSVKIDGLGTF 75 ++ +++ + +++ D A + + ++ Y+A+G V++ G G F Sbjct: 6 DLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNF 51
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 31.6 bits (71), Expect = 0.021 Identities = 23/100 (23%), Positives = 38/100 (38%), Gaps = 15/100 (15%) Query: 53 NKTLKEVFKEIERNSEFVIFYYEGVVDANKRVKINVKQQTVDKILDKLFEGTDNTYNIVD 112 NKT KE FK+ N +V + K Q +L K+ + Y+ + Sbjct: 52 NKTEKEKFKDSINN----------LVKTEFTNETLDKIQQTQDLLKKIPKDVLEIYSELG 101 Query: 113 KQIYITKKSGEEKTAITLSAAQQQKKITGKVMDELGEPLP 152 +IY T + L +++K M+ GE +P Sbjct: 102 GEIYFT--DIDLVEHKELQDLSEEEK---NSMNSRGEKVP 136
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 25.3 bits (55), Expect = 0.036 Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 4/69 (5%) Query: 9 NDVCHVGKLIVHPGYQNQGIGKALMYEIEKYFPACRKLVLFTGEETPNTL---HLYEKVG 65 N + + V Y+ +G+G AL+ + E + H Y K Sbjct: 87 NGYALIEDIAVAKDYRKKGVGTALL-HKAIEWAKENHFCGLMLETQDINISACHFYAKHH 145 Query: 66 YHIVSKEKM 74 + I + + M Sbjct: 146 FIIGAVDTM 154
>TACYTOLYSIN#Bacterial thiol-activated pore-forming cytolysin signature. Length = 574 Score = 52.7 bits (126), Expect = 2e-09 Identities = 53/286 (18%), Positives = 103/286 (36%), Gaps = 36/286 (12%) Query: 243 AIQDKIYLGNLVSHNAQSNINIPEFTGYTFNPITIS---------TSAAVEEVVKTYVPS 293 ++ D+ Y L N N P+ NP I + V + V S Sbjct: 171 SVTDRTYPAALQLANKGFTENKPDAVVTKRNPQKIHIDLPGMGDKATVEVNDPTYANV-S 229 Query: 294 QKEQDTFARQIMENMSDQNVSFEIDNGTFDFYSHKQLYMAGMINLGVKLDEAVSGVSFLE 353 + + + YS Q+ A +N+ K+ + G+ F Sbjct: 230 TAIDNLVNQWHDNYSGGNTLPARTQYTESMVYSKSQIEAA--LNVNSKILDGTLGIDFKS 287 Query: 354 KEMPRKYGLIYSFKQILFTLDMDRPEK--------LIKEELKEVDKGRGVS------YVA 399 K +I ++KQI +T+ + P + +EL+ +GVS +V+ Sbjct: 288 ISKGEKKVMIAAYKQIFYTVSANLPNNPADVFDKSVTLKELQR----KGVSNEAPPLFVS 343 Query: 400 SVSYGRIGLLVVESDIDSRDVRLAINKVIAGESLS--QEETNILSAVDVCYVYF--DKDK 455 +V+YGR + +E+ S DV A + + G + + ++IL V D + Sbjct: 344 NVAYGRTVFVKLETSSKSNDVEAAFSAALKGTDVKTNGKYSDILENSSFTAVVLGGDAAE 403 Query: 456 NVQTQKGGLDVVNAY--KEAILKEKDCIYPVEFSLSDYTDHSLNSI 499 + + DV+ A K+ YP+ ++ ++ + + Sbjct: 404 HNKVVTKDFDVIRNVIKDNATFSRKNPAYPISYTSVFLKNNKIAGV 449
>cloacin#Cloacin signature. Length = 551 Score = 29.3 bits (65), Expect = 0.014 Identities = 19/60 (31%), Positives = 25/60 (41%) Query: 163 KNIPIWAFHGTADNLIPITETERIVNTLDKCEGKIKFTKLEGEGHGIQYLYEKHPQIYEW 222 KN P F + P +TE I D G K K G G ++ +K +IYEW Sbjct: 450 KNKPRKGFKDYGHDYHPAPKTENIKGLGDLKPGIPKTPKQNGGGKRKRWTGDKGRKIYEW 509
>PF06580#Sensor histidine kinase Length = 349 Score = 39.1 bits (91), Expect = 2e-05 Identities = 20/108 (18%), Positives = 46/108 (42%), Gaps = 17/108 (15%) Query: 218 EILLDQNLITLALINLIRNALQ-ATANNPEP-QIRVESGKEATFSFIQVTDNGEGIPENR 275 ++D + + + L+ N ++ A P+ +I ++ K+ ++V + G +N Sbjct: 248 PAIMDVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKN- 306 Query: 276 LEDIFTPFYSTKKEGSGIGLP-LSRRIMQLHGGE--LIVTSEPGEGTV 320 KE +G GL + R+ L+G E + ++ + G+ Sbjct: 307 -----------TKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNA 343
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 29.6 bits (66), Expect = 0.011 Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 1/21 (4%) Query: 32 LLKAAGMARSTFYYHFRKSKQ 52 + KAAG+ R Y+HF K K Sbjct: 37 IAKAAGVTRGAIYWHF-KDKS 56
>PF07472#Fucose-binding lectin II Length = 245 Score = 28.8 bits (64), Expect = 0.008 Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 15/62 (24%) Query: 77 PDGRGELRMDDGTVFLP-NDRYPLDREVFRLYYTSRSDDQQTIDVYVEDNTGQVVKTSFT 135 G GE DG LP N F + S QQTI+VYV+DN K + T Sbjct: 126 TTGGGE---RDGIFNLPPNIA-------FGVTALVNSSAQQTIEVYVDDNP----KPAAT 171 Query: 136 FQ 137 FQ Sbjct: 172 FQ 173
>OUTRMMBRANEA#Outer membrane protein A signature. Length = 346 Score = 28.7 bits (64), Expect = 0.027 Identities = 12/31 (38%), Positives = 14/31 (45%) Query: 1 MKKILLALAFIGCMFAAHAQEKPSTGDLYDG 31 MKK +A+A FA AQ P Y G Sbjct: 1 MKKTAIAIAVALAGFATVAQAAPKDNTWYTG 31
>cloacin#Cloacin signature. Length = 551 Score = 32.0 bits (72), Expect = 0.004 Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 4/66 (6%) Query: 289 SGGAGGAMGGINKAGAFATGVA-GGIAGNMIGRTFGRRGGGGSSSGNGGVGGPASGSAPN 347 G G G + +G + GG +G+ I G G G + G G G SG+ N Sbjct: 24 PTGLGVGGGASDGSGWSSENNPWGGGSGSGIHW-GG--GSGHGNGGGNGNSGGGSGTGGN 80 Query: 348 GRNLAT 353 +A Sbjct: 81 LSAVAA 86 Score = 30.8 bits (69), Expect = 0.009 Identities = 22/67 (32%), Positives = 27/67 (40%), Gaps = 2/67 (2%) Query: 289 SGGAGGAMGGINKAGAFATGVAGGIAGNMIG--RTFGRRGGGGSSSGNGGVGGPASGSAP 346 SG G G+ G + G N G G GGGS GNGG G + G + Sbjct: 17 SGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSG 76 Query: 347 NGRNLAT 353 G NL+ Sbjct: 77 TGGNLSA 83
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 26.3 bits (58), Expect = 0.029 Identities = 15/75 (20%), Positives = 26/75 (34%), Gaps = 3/75 (4%) Query: 11 GKSVEFRGLKAQYLFIFAGGLLAVFVVFVILYMAGVDQWVCIA---FGVAAASVLVWLTF 67 G S + R Q + A + VF+ LY + + G+ + L Sbjct: 860 GMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFN 919 Query: 68 RLNTRYGEHGLMKLL 82 + N Y GL+ + Sbjct: 920 QKNDVYFMVGLLTTI 934
>BONTOXILYSIN#Bontoxilysin signature. Length = 1196 Score = 29.5 bits (66), Expect = 0.004 Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 3/77 (3%) Query: 64 GQDYERLFIRNAPSNTRSGKTVYIRKEFHERITRIVQVIGKNELSLYSYLDNVLEQHFAT 123 G D E FI P + + E+ I + + ++ + + L+Q F Sbjct: 270 GVDLE--FINTNPYWFTN-SYFPNSIKMFEKYKNIYKTEIEGNNAIGNDIKLRLKQKFQI 326 Query: 124 YQEEISELYKKRNSDIF 140 ++I L F Sbjct: 327 NVQDIWNLNLNYFCQSF 343
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 30.7 bits (69), Expect = 0.046 Identities = 21/144 (14%), Positives = 39/144 (27%), Gaps = 33/144 (22%) Query: 589 AKRKTPRQPS---LFAPASSPEEQKSEMPKTTPPERDPEDLYASLNWEDNPPINGFYEMM 645 + P QP + APA Q + P E +PE Sbjct: 41 IELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPE--------------------- 79 Query: 646 MSLTPERRAELRRQSARQQETPEQRERQAVRPPTEAPKGKRK-----QAAGTPRTGGLFD 700 PE E +++ E P+ + + +P + + KR +P Sbjct: 80 ----PEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPA 135 Query: 701 TPDNPEEEEPGKEMPQIREADMKP 724 P + + + + Sbjct: 136 RPTSSTATAATSKPVTSVASGPRA 159
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 32.2 bits (73), Expect = 0.002 Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 2/96 (2%) Query: 87 DALSSVARVAMNLGKASVAQDCFRKVLESDSTDFYANYQLARLYSQIGDYENAVLQFNVL 146 + L S+A GK A F+ + D D L +G Y+ A+ ++ Sbjct: 37 EQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYG 96 Query: 147 RDQDTTKVNPVIYRNIADCYMKMNAIPAATICYFQA 182 D P + A+C ++ + A F A Sbjct: 97 AIMD--IKEPRFPFHAAECLLQKGELAEAESGLFLA 130
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 34.1 bits (78), Expect = 4e-04 Identities = 18/82 (21%), Positives = 32/82 (39%) Query: 86 DALNALARAAINYGKITEAKRCYGKVLESDSLNFYANNQLARLYYQLGDYDKSMDHYRTL 145 + L +LA GK +A + + + D + L +G YD ++ Y Sbjct: 37 EQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYG 96 Query: 146 ASYESDNPTILAGLADCHMKKG 167 A + P A+C ++KG Sbjct: 97 AIMDIKEPRFPFHAAECLLQKG 118 Score = 32.2 bits (73), Expect = 0.002 Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 4/93 (4%) Query: 112 LESDSLNFYANNQLARLYYQLGDYDKSMDHYRTLASYESDNPTILAGLADCHMKKGGMNM 171 + SD+L + LA YQ G Y+ + ++ L + + GL C G ++ Sbjct: 31 ISSDTLEQLYS--LAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDL 88 Query: 172 LIALELYTRAMEINPENIRVASSLINSLLWKGD 204 A+ Y+ ++ + R LL KG+ Sbjct: 89 --AIHSYSYGAIMDIKEPRFPFHAAECLLQKGE 119
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 38.1 bits (88), Expect = 1e-04 Identities = 13/37 (35%), Positives = 23/37 (62%) Query: 469 SVNSSGKGEEKPNEPDKPVTPDDPDEPDTPDDPSLPD 505 + + + P+ P+ P P++PDEP+ PD+P+ PD Sbjct: 284 ANDDQPNNPDNPDNPNNPDNPNNPDEPNNPDNPNNPD 320 Score = 37.3 bits (86), Expect = 2e-04 Identities = 14/28 (50%), Positives = 19/28 (67%) Query: 478 EKPNEPDKPVTPDDPDEPDTPDDPSLPD 505 + PN PD P PD+P+ PD P++P PD Sbjct: 296 DNPNNPDNPNNPDEPNNPDNPNNPDNPD 323 Score = 33.4 bits (76), Expect = 0.003 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%) Query: 457 HLSSDPRGGTPGSVNSSGKGEEKPNEPDKPVTPDDPDEPDTPDD 500 H ++D + P + ++ + PN PD+P PD+P+ PD PD+ Sbjct: 282 HFANDDQPNNPDNPDNPNN-PDNPNNPDEPNNPDNPNNPDNPDN 324
>PF05272#Virulence-associated E family protein Length = 892 Score = 147 bits (373), Expect = 6e-39 Identities = 70/367 (19%), Positives = 122/367 (33%), Gaps = 52/367 (14%) Query: 366 YNPFRSYFENLPAWDGK-------TDAIGQLAATVDTTCPEYWGKCLKKWLVAVVACAIN 418 +PFR + + WD +G+ Y K L+ VA + Sbjct: 532 VHPFRDWVKAQQ-WDEVPRLEKWLVHVLGKTPDDYKPRRLRYLQLVGKYILMGHVARVME 590 Query: 419 EQKANHTVLLLSGAQGLGKTTWLRNLVPPALRNYVYSGNLDPTAKDSSLLMSDCFLIILD 478 ++L G G+GK+T + LV + + T KDS ++ L Sbjct: 591 PGCKFDYSVVLEGTGGIGKSTLINTLVGLDF--FSDTHFDIGTGKDSYEQIAGIVAYELS 648 Query: 479 ELSGQSRVELNQLKALITKDSILERRPYARNAETFVRRASFAATVNDSQILTDRTGSRRF 538 E++ R + +KA + R Y R + R+ T N Q L D TG+RRF Sbjct: 649 EMTAFRRADAEAVKAFFSSRKDRYRGAYGRYVQDHPRQVVIWCTTNKRQYLFDITGNRRF 708 Query: 539 LCFETLRIDYTSGIDHTA-----IYAQALALYKQGFRYWFADQDITEINENNEPFQQSSP 593 + + + + ++A+AL LY G RY+ + +D E + + Sbjct: 709 W---PVLVPGRANLVWLQKFRGQLFAEALHLYLAGERYFPSPED-------EEIYFRPEQ 758 Query: 594 EAELLFTYFRKPVR-FEAYILLSTSEIMSKIAERTRYSVTT-----------------MS 635 E L+ T + + +E ++ + T M Sbjct: 759 ELRLVETGVQGRLWALLTREGAPAAEGAAQKGYSVNTTFVTIADLVQALGADPGKSSPML 818 Query: 636 VNQLGKVLKGAGFESQKR--HGKRLFAVIELTNDQIEARRKGFGYDPVDGEEQPDGEDNN 693 Q+ L G+E + +R + + A K G D + Sbjct: 819 EGQVRDWLNENGWEYLRETSGQRRRGYMRPQVWPPVIAEDKEADQAHAPG-------DQD 871 Query: 694 GEEPPEP 700 ++P EP Sbjct: 872 QQQPVEP 878
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 32.4 bits (74), Expect = 2e-04 Identities = 15/48 (31%), Positives = 25/48 (52%) Query: 39 ELCEIVAESSTASSGDVKVVIDRVIKFLLLFLARGEVVQCGELGTFQL 86 +L VAE++ + D +D V + +LA+GE VQ G F++ Sbjct: 6 DLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEV 53
>FLGFLGJ#Flagellar protein FlgJ signature. Length = 313 Score = 49.7 bits (118), Expect = 7e-10 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 18/119 (15%) Query: 2 DKYSFTRKYLPAARMAGELYGLNPVVILAQSAIETGWGESSL----ATCYNNFFGLTGYG 57 D +F + A++A + G+ +ILAQ+A+E+GWG+ + N FG+ Sbjct: 148 DSKAFLAQLSLPAQLASQQSGVPHHLILAQAALESGWGQRQIRRENGEPSYNLFGVK--- 204 Query: 58 VANAYWHGGKTDLD---------KPDGLLFRRYDSPENSFLDFARLIATVYKQAAAVSH 107 A+ W G T++ K FR Y S + D+ L+ T + AAV+ Sbjct: 205 -ASGNWKGPVTEITTTEYENGEAKKVKAKFRVYSSYLEALSDYVGLL-TRNPRYAAVTT 261
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 36.6 bits (84), Expect = 6e-05 Identities = 57/273 (20%), Positives = 99/273 (36%), Gaps = 25/273 (9%) Query: 1 MSHNLLKGKRGIIFGALNEMSIAWKVAEKAVEEGATITLSN-TPVAVRMGEVDALAKKLN 59 M+ ++GK I GA I VA +GA I + P + A+ + Sbjct: 1 MNAKGIEGKIAFITGAAQ--GIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARH 58 Query: 60 AEVLPADATSVEDLEMVFSKSVEILGGKIDFVLHSIGMSPNVRKKRTYDDLDYDMLGKTL 119 AE PAD ++ + ++ +G ID +++ G V + L + T Sbjct: 59 AEAFPADVRDSAAIDEITARIEREMGP-IDILVNVAG----VLRPGLIHSLSDEEWEATF 113 Query: 120 DISAVSFHKMLQVAKKQDAIADCGSVLALSYVAAQRTFFGYNDMADAKSLLESIARSFGY 179 +++ + K GS++ + A A +K+ + G Sbjct: 114 SVNSTGVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGL 173 Query: 180 IYGREKGVRINTISQSPTLTT-----------AGSGVKGMDHLMDFSNKMSPLGN-ASAE 227 E +R N +S T T A +KG L F + PL A Sbjct: 174 ELA-EYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKG--SLETFKTGI-PLKKLAKPS 229 Query: 228 ECANYCIVMFSDLTRKVTMQNLFHDGGFSSMGM 260 + A+ + + S +TM NL DGG +++G+ Sbjct: 230 DIADAVLFLVSGQAGHITMHNLCVDGG-ATLGV 261
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 310 bits (796), Expect = e-101 Identities = 104/368 (28%), Positives = 174/368 (47%), Gaps = 25/368 (6%) Query: 460 ETILEVNLDAVVHNFNYYRSKLKPETKMVCMVKAFGYGAGSYELAKTLQEHRCDYLAVAV 519 ++L A+ N + R ++ +VKA YG G + + D A+ Sbjct: 4 PIQASLDLQALKQNLSIVRQAA-THARVWSVVKANAYGHGIERIWSAIGA--TDGFALLN 60 Query: 520 ADEGAELRKEGISIPIIVMNPEFSS--FNVLFENNLEPEIYSFRLLDAMIKETERRGITS 577 +E LR+ G PI+++ F + + ++ L ++S L A+ + + Sbjct: 61 LEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNARLKAPLD- 119 Query: 578 YPIHIKIDTGMHRLGFQPDDVPAICERLKEQSGVTARSVFSHLVGSDSSIFDDFTKKQLD 637 I++K+++GM+RLGFQPD V + ++L+ + V ++ SH ++ D + Sbjct: 120 --IYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHP---DGISGAMA 174 Query: 638 TFTQAAAELENGLEYKVIKHILNSAGIERFTDYQMDMVRLGIGLYGVSASG-IK-----G 691 QAA LE + + NSA + D VR GI LYG S SG + G Sbjct: 175 RIEQAAEGLEC------RRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTG 228 Query: 692 LRNVSTLRTTILQIQHVPAGDSIGYSRRTYVDRDSRIAIIPIGYADGLDRHFSNRGGEVS 751 LR V TL + I+ +Q + AG+ +GY R + RI I+ GYADG RH G V Sbjct: 229 LRPVMTLSSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHAPT-GTPVL 287 Query: 752 ISGKRCPIVGNICMDACMIDVTDT-DAQEGDPVIVFGEELPVSELSDKLKTIPYEILTSV 810 + G R VG + MD +D+T A G PV ++G+E+ + +++ T+ YE++ ++ Sbjct: 288 VDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELMCAL 347 Query: 811 SPRVKRVY 818 + RV V Sbjct: 348 ALRVPVVT 355
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 40.1 bits (94), Expect = 5e-07 Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 1/87 (1%) Query: 32 NTNELARMIESMSTFTTADIKGAIKAISDRLYFCLSNSQSVHLEGIGTFSVTLRCKQQVE 91 N +L + + T D A+ A+ + L+ + V L G G F V R ++ Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGR 62 Query: 92 NKKDIRSASIEFKNV-EFRADPELKKR 117 N + I+ V F+A LK Sbjct: 63 NPQTGEEIKIKASKVPAFKAGKALKDA 89
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 52.5 bits (126), Expect = 1e-09 Identities = 52/246 (21%), Positives = 90/246 (36%), Gaps = 39/246 (15%) Query: 150 TRIEARYKLIVGRPS----LKRYVINSIADRARIEIADIVVSPLALADVVLTDNEKDLGC 205 + + +++V P ++R I A A ++ P+A A + G Sbjct: 102 SFMRPSPRVLVCVPVGATQVERRAIRESAQGAGAREVFLIEEPMAAAIGAGLPVSEATGS 161 Query: 206 ALIGFGAGVTTLTVYKAGQLVNLSVIPFGGHLITRDITS-------LHLVEAEAERVKLT 258 ++ G G T + V +V S + GG I + + EA AER+K Sbjct: 162 MVVDIGGGTTEVAVISLNGVVYSSSVRIGGDRFDEAIINYVRRNYGSLIGEATAERIKHE 221 Query: 259 YGSAQMEKDNDLSIQVSSADGM--GLREIKL--ADLNNVIEARMKEILENVYARLEAT-- 312 GSA + I+V + R L ++ ++ + I+ V LE Sbjct: 222 IGSAYPGDEVR-EIEVRGRNLAEGVPRGFTLNSNEILEALQEPLTGIVSAVMVALEQCPP 280 Query: 313 ----GLINSLGAGIIITGGGAALKNLPEVIRERLKMDVRYSAVRKGIVESGEMIANNPEY 368 + G+++TGGGA L+NL ++ E + V +A +P Sbjct: 281 ELASDISE---RGMVLTGGGALLRNLDRLLMEETGIPVV--------------VAEDPLT 323 Query: 369 AVAVGL 374 VA G Sbjct: 324 CVARGG 329
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 90.3 bits (224), Expect = 5e-23 Identities = 36/121 (29%), Positives = 60/121 (49%) Query: 6 KIFFCEDDENLGMLLREYLQAKGYVTDLFSDGEAGYKGFTKGKYDLCVLDVMMPKKDGFT 65 I +DD + +L + L GY + S+ ++ G DL V DV+MP ++ F Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 66 LAQEIRSINPDIPIIFLTAKTMKEDILEGFKIGADDYLTKPFSMEELLLRIEAILRRVKG 125 L I+ PD+P++ ++A+ ++ + GA DYL KPF + EL+ I L K Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 126 K 126 + Sbjct: 125 R 125
>PF06580#Sensor histidine kinase Length = 349 Score = 29.1 bits (65), Expect = 0.042 Identities = 17/109 (15%), Positives = 40/109 (36%), Gaps = 30/109 (27%) Query: 412 LMDNAVKY--RRPEVPLTLMVRTWNDNNGKLLISVEDNGIGIKKEYLKKVFDRFFRVPTG 469 L++N +K+ + ++++ DN G + + VE+ G K Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDN-GTVTLEVENTGSLALK---------------- 305 Query: 470 NVHDVKGFGLGLAYVRKII-----EDHKGTIRAEMGPGNVGTKFIITLP 513 + + G GL VR+ + + + + + G ++ +P Sbjct: 306 --NTKESTGTGLQNVRERLQMLYGTEAQIKLSEKQG----KVNAMVLIP 348
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 29.4 bits (66), Expect = 0.030 Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 1/31 (3%) Query: 1 MKIIIAG-AGEVGTHLAKMLSQEKQDIILMD 30 MK ++ G AG +G H++K L + ++ +D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGID 31
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 32.9 bits (75), Expect = 0.004 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 6/79 (7%) Query: 506 KKLSEGDDIAV--LSIGP-IGNEVIKAIEEVAGEGISVAHYDMIYLKPIDEELLDEIGKK 562 L+ A+ +SIG I ++V K + + E ++ + L+ I EL D + + Sbjct: 13 SALTGKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFE---IAKLETITSELKDNVLLE 69 Query: 563 FKRVITVENGVVKGGLGSA 581 FK ++ + + KGG+ A Sbjct: 70 FKELMMAQEFIQKGGIDYA 88
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 34.0 bits (78), Expect = 0.001 Identities = 17/73 (23%), Positives = 27/73 (36%) Query: 6 LCAALLLGCFLQPQAQTPQPVKQLLNAPYMKGATFSIVVKDLQDGKTVYNYDGDREVSPA 65 LC LL +PQP++Q+ + ++ DL G+T+ + D Sbjct: 6 LCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADERFPMM 65 Query: 66 SVLKTVATATALE 78 S K V L Sbjct: 66 STFKVVLCGAVLA 78
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 59.8 bits (145), Expect = 1e-12 Identities = 25/145 (17%), Positives = 58/145 (40%), Gaps = 7/145 (4%) Query: 7 IIDDEPLAISLLESYVNKTPFLELAGKYNSAVNALPALSKEPVDLLFLDIQMPELNGMEF 66 + DD+ ++L +++ + ++A ++ DL+ D+ MP+ N + Sbjct: 8 VADDDAAIRTVLNQALSRAGYDVRI--TSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 67 SRILKT---DTRIIFTTAFSQY--ALDSYKVNALDYLLKPISYADFLKSANKALQWYELL 121 +K D ++ +A + + A+ + + A DYL KP + + +AL + Sbjct: 66 LPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKRR 125 Query: 122 REGASTGGSRTAPSQAVSPSVESIF 146 P S +++ I+ Sbjct: 126 PSKLEDDSQDGMPLVGRSAAMQEIY 150
>PF06580#Sensor histidine kinase Length = 349 Score = 170 bits (432), Expect = 5e-52 Identities = 77/343 (22%), Positives = 147/343 (42%), Gaps = 18/343 (5%) Query: 21 IIHIAAWGILFGLPFFFTGRESQVLTVTSYLRSVIVPLSFMMVFYVNYFLLVNRYLFSRH 80 WG ++ L F + S + ++ + L ++ R R Sbjct: 14 YCQGIGWG-VYTLTGFGFASLYGSPKLHSMIFNIAISLMGLV------LTHAYRSFIKRQ 66 Query: 81 GW-KFFLSNVAL-IASAIILVHLLMQLLP------PPEIPHPHRSERELKDVIGFFTVNA 132 GW K + + L + A +++ ++ + I L + Sbjct: 67 GWLKLNMGQIILRVLPACVVIGMVWFVANTSIWRLLAFINTKPV-AFTLPLALSIIFNVV 125 Query: 133 MLYALVAGLSVAIKMTSGWYQIESMRRELEKSRAEAELQNLKSQLNPHFLFNTLNNIYSL 192 ++ + + L + Q E + ++ EA+L LK+Q+NPHF+FN LNNI +L Sbjct: 126 VVTFMWSLLYFGWHFFKNYKQAEIDQWKMASMAQEAQLMALKAQINPHFMFNALNNIRAL 185 Query: 193 IAFSPERAQEAVHDLSRLLRYVLYDSSQPQVLLEKELDFIRNYVELMRIRLPEHVELKTE 252 I P +A+E + LS L+RY L S+ QV L EL + +Y++L I+ + ++ + + Sbjct: 186 ILEDPTKAREMLTSLSELMRYSLRYSNARQVSLADELTVVDSYLQLASIQFEDRLQFENQ 245 Query: 253 IAATKPDALIAPLLFISLIENAFKHGVSNSK-PSFIDLDIHQKGDRVVCYLKNSYFPKDA 311 I D + P+L +L+EN KHG++ I L + V ++N+ Sbjct: 246 INPAIMDVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTG-SLAL 304 Query: 312 EQDKSGSGIGIKNLRKRLELIYPNRHIFSYGVEGDNYYSMLEL 354 + K +G G++N+R+RL+++Y + +M+ + Sbjct: 305 KNTKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLI 347
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 69.5 bits (170), Expect = 6e-15 Identities = 40/224 (17%), Positives = 76/224 (33%), Gaps = 25/224 (11%) Query: 84 QLIAEMDKVNLKAELASAQAQLASSKTEYEYQQKNYARSKVLFDKKLISDADYETATYNY 143 Q IA+ + + + A +L K++ E + +K ++ + ++ + Sbjct: 247 QAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAK---EEYQLVTQLFKNEILDK 303 Query: 144 -EKAKAAYEQSQASMVKVNRNLEYATITSPIDGVVINRAV-EEGQTVAAGFETPTLFTIA 201 + + K + + I +P+ V V EG V TL I Sbjct: 304 LRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTA---ETLMVIV 360 Query: 202 ADLTKMQVIADVDEADIGNVENGQRVSFTVDAYPND---VFEGTVWQIRLGDSSSSSSSS 258 + ++V A V DIG + GQ V+A+P G V I + + Sbjct: 361 PEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNI-------NLDAI 413 Query: 259 TSTSTVVTYEVVI-------TADNPDLKLKPRLTANVTIYTLER 295 + + V+I + N ++ L + I T R Sbjct: 414 EDQRLGLVFNVIISIEENCLSTGNKNIPLSSGMAVTAEIKTGMR 457 Score = 53.3 bits (128), Expect = 8e-10 Identities = 15/165 (9%), Positives = 51/165 (30%), Gaps = 29/165 (17%) Query: 5 LIIGIAGVLVVAGGI-WFFTGKTSKGGIRLETAKVGRSSISNTVTATGTVEPVTEV-EVG 62 ++ + + G+ TA G + E+ Sbjct: 58 RLVAYFIMGFLVIAFILSVLGQVEIV-----------------ATANGKLTHSGRSKEIK 100 Query: 63 TQVSGIIDKLYADYNDVVKAGQLIAEMDKVNLKAELASAQAQLASSK-TEYEYQQKNYAR 121 + I+ ++ + V+ G ++ ++ + +A+ Q+ L ++ + YQ + + Sbjct: 101 PIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSI 160 Query: 122 SKVLF---------DKKLISDADYETATYNYEKAKAAYEQSQASM 157 + +S+ + T ++ + ++ + Sbjct: 161 ELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQK 205
>PF05704#Capsular polysaccharide synthesis protein Length = 307 Score = 30.2 bits (68), Expect = 0.030 Identities = 8/78 (10%), Positives = 19/78 (24%), Gaps = 9/78 (11%) Query: 406 TTDLTFMAGTQYAY------SFDKFLFMPSDLTAGLEYNYDHLKDEMIGYNRYTNQKVHI 459 L + + Y D ++F + N H+ Sbjct: 197 DPFLVGLKNSMVTYLKKKEKPADYYIF---HDFVSVMAVSKEYSKYWKEIPYVNNVNPHM 253 Query: 460 ESLFLQNEWKNKMWSFLI 477 + N M++++ Sbjct: 254 LQYLGNLPYDNSMFNYIK 271
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 32.4 bits (74), Expect = 0.003 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 8/81 (9%) Query: 22 IVKAAPSVQAVKEKPATNVKDALAIPRNENSMPGKYPGKVVKATHP---GCIVDGQPSEE 78 IV PSV A+++ A + K A+ + M G+ PG + A P G I D Sbjct: 31 IVLNEPSVVAIRQDRAGSPKSVAAVGHDAKQMLGRTPGNIA-AIRPMKDGVIAD----FF 85 Query: 79 AAYEMLRNCLLNLTGKENLKE 99 +ML++ + + ++ Sbjct: 86 VTEKMLQHFIKQVHSNSFMRP 106
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 32.1 bits (73), Expect = 0.012 Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 9/62 (14%) Query: 714 RELRALFNNVPNLAQTIRKSIEENAELKKQVSDYVKEKVAMLKKELIAKAVERHGVKVIV 773 + A N P I+ + NA + +K K+A L+ G+KV+ Sbjct: 275 YNVIARINGKPAAGLGIKLATGANA---LDTAKAIKAKLAELQPFFPQ------GMKVLY 325 Query: 774 FR 775 Sbjct: 326 PY 327
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 78.3 bits (193), Expect = 6e-19 Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 3/118 (2%) Query: 2 IKLLLVEDDANLSYIIQGGLEDMIGGYEVIIACNGKEGLEKYRQVKPDIIVADIEMPVMD 61 +L+ +DDA + ++ L GY+V I N D++V D+ MP + Sbjct: 4 ATILVADDDAAIRTVLNQALSRA--GYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 62 GYEMVRRIRETDRELPILFSSARVSPKDVVKGYELGVDNYVKKPF-LPEELDAHVRAL 118 ++++ RI++ +LP+L SA+ + +K E G +Y+ KPF L E + RAL Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119
>ADHESNFAMILY#Adhesin family signature. Length = 309 Score = 29.8 bits (67), Expect = 0.028 Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 2/44 (4%) Query: 1 MKKIFLYSALLAAMVTFNGCSEDDFDSKYKDPSKVSEVTLDKMM 44 MKK+ L + + C+ D+ KV V + ++ Sbjct: 1 MKKLGTLLVLFLSAIILVACASGKKDTTSGQKLKV--VATNSII 42
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 86.8 bits (215), Expect = 7e-22 Identities = 27/110 (24%), Positives = 51/110 (46%), Gaps = 2/110 (1%) Query: 2 IKLLLVEDDPTLSYIIQSGLQDIIGGYEVITAGNGMEGLQAWQQHHPDIIISDIDMPVMN 61 +L+ +DD + ++ L GY+V N + D++++D+ MP N Sbjct: 4 ATILVADDDAAIRTVLNQALSR--AGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 62 GFQMVERIRETDGDTPIVFASALTSPKDVREGYKIGVNNYIKKPFVPDEL 111 F ++ RI++ D P++ SA + + + G +Y+ KPF EL Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTEL 111
>FRAGILYSIN#Fragilysin metallopeptidase (M10C) enterotoxin signature. Length = 405 Score = 29.3 bits (65), Expect = 0.025 Identities = 9/33 (27%), Positives = 16/33 (48%) Query: 3 KNLSYLLFILYTSLFSACENEIPFQSKIQEPQL 35 KN+ LL + +L +AC NE + + + Sbjct: 10 KNVKLLLMLGTAALLAACSNEADSLTTSIDAPV 42
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 82.0 bits (203), Expect = 2e-24 Identities = 27/87 (31%), Positives = 46/87 (52%) Query: 2 NRSQLINELATKTNLNKRDITTILDAFTEMVAEKTKAGDRVFIPGFGSFKPRLQTSRPAR 61 N+ LI ++A T L K+D +DA V+ G++V + GFG+F+ R + +R R Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGR 62 Query: 62 NPRNGDVIQLTPRTIVHFKCASLLIEK 88 NP+ G+ I++ + FK L + Sbjct: 63 NPQTGEEIKIKASKVPAFKAGKALKDA 89
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 91.4 bits (227), Expect = 4e-21 Identities = 32/154 (20%), Positives = 66/154 (42%), Gaps = 4/154 (2%) Query: 1088 PTILIAEDNHDLREFIKSILNN-KYNVIEAENGAIALDIARKDSPDIIISDILMPEMDGK 1146 TIL+A+D+ +R + L+ Y+V N A D++++D++MP+ + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 1147 QLCVQIKQDIQTCHIPFIMITALSSETDQIEGLTVGADDYITKPFNPEILKTKIKNVLKS 1206 L +IK+ +P ++++A ++ I+ GA DY+ KPF+ L I L Sbjct: 64 DLLPRIKKARP--DLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 1207 RELISRRYATLSALEPEEFVTEDKDATFLLEIIE 1240 + + + + V + ++ Sbjct: 122 PKRRPSK-LEDDSQDGMPLVGRSAAMQEIYRVLA 154
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 33.4 bits (76), Expect = 0.001 Identities = 12/81 (14%), Positives = 26/81 (32%), Gaps = 2/81 (2%) Query: 522 GTNFQSQKKYEDAIRCYQKAGYLVPNRQYPYYLLAKLYFEISDFSNAKKTAEYCLEKQPK 581 G Q+ +Y+ AI Y + + A+ + + + A+ E Sbjct: 77 GACRQAMGQYDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELI-- 134 Query: 582 VDSPAVTEMKEEMLELLNYLD 602 D E+ + +L + Sbjct: 135 ADKTEFKELSTRVSSMLEAIK 155 Score = 29.5 bits (66), Expect = 0.026 Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 14/93 (15%) Query: 490 GCLTMLKEYEQSNELLDKAYNYCSDPAIYIRKGTNFQSQKKYEDAIRCYQKAGYLVPNRQ 549 G + ML E S++ L++ Y+ N KYEDA + +Q L Sbjct: 23 GTIAMLNEI--SSDTLEQLYSL----------AFNQYQSGKYEDAHKVFQALCVLDH-YD 69 Query: 550 YPYYL-LAKLYFEISDFSNAKKTAEYCLEKQPK 581 ++L L + + A + Y K Sbjct: 70 SRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIK 102
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 36.2 bits (84), Expect = 1e-05 Identities = 14/50 (28%), Positives = 20/50 (40%) Query: 35 QEFVEHVAAFEHLPKNQIGGALAAIVDDLCYLLADGNIVELGDLGFFSTS 84 Q+ + VA L K A+ A+ + LA G V+L G F Sbjct: 5 QDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVR 54
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 47.1 bits (112), Expect = 3e-08 Identities = 21/122 (17%), Positives = 41/122 (33%), Gaps = 7/122 (5%) Query: 18 RLLAGKYSGYNFLFTDVDTLDITDPAAVRAVVKDNGVNYILNCAAYTAVDKAEDDEALCR 77 RL G+ F +D+ D + + + AV + ++ Sbjct: 45 RLELLAQPGFQFH-----KIDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYA 99 Query: 78 RINTFAVGVLGKAAYEAGAK-MIHVSTDYVFSGTNCRPYVETDAT-RPVSAYGRTKLAGE 135 N + + + +++ S+ V+ P+ D+ PVS Y TK A E Sbjct: 100 DSNLTGFLNILEGCRHNKIQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANE 159 Query: 136 EI 137 + Sbjct: 160 LM 161
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 229 bits (586), Expect = 7e-70 Identities = 113/457 (24%), Positives = 211/457 (46%), Gaps = 43/457 (9%) Query: 10 RRRTFAIVSHPDAGKTTLTEKLLLFGGAIHVAGAVKSNKIKKTATSDWMEIEKQRGISVA 69 + +++H DAGKTTLTE LL GAI G+V K T +D +E+QRGI++ Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVD----KGTTRTDNTLLERQRGITIQ 57 Query: 70 TSVMAFDYDDHKVNILDTPGHQDFAEDTFRTLTAVDSVIIVIDIAKGVEAQTRKLMEVCR 129 T + +F +++ KVNI+DTPGH DF + +R+L+ +D I++I GV+AQTR L R Sbjct: 58 TGITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALR 117 Query: 130 MRKTPVIVFVNKMDRDGKDPFDLLDEIEEELQIKVRPLSWPIDMGQRFKGVYNIYEQKLD 189 P I F+NK+D++G D + +I+E+L ++ + +QK++ Sbjct: 118 KMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEI------------------VIKQKVE 159 Query: 190 LYTPSKQYVTEKIEFNDINSPELENHIGDTLAEKLRADIELIEGVYPEFDVDTYLKGDIA 249 LY VT E ++ +E + D L EK + L + + + + Sbjct: 160 LY--PNMCVTNFTESEQWDTV-IEGN--DDLLEKYMSGKSLEALELEQEESIRFHNCSLF 214 Query: 250 PVFFGSALNNFGVKELLDCFIKIAPSPRPIQAVERVVEPEEDSFTGFIFKIHANMDPNHR 309 PV+ GSA NN G+ L++ S + G +FKI + + R Sbjct: 215 PVYHGSAKNNIGIDNLIEVITNKFYSS---------THRGQSELCGKVFKIEYS-EKRQR 264 Query: 310 SCIAFVKICSGRFERNAPYKHVRFGKQLRFSSPTAFMAQKKETVDEAFAGDIIGLPDTGN 369 +A++++ SG + K ++ + + + +D+A++G+I+ L + Sbjct: 265 --LAYIRLYSGVLHLRDSVRISEKEK-IKITEMYTSINGELCKIDKAYSGEIVILQNEF- 320 Query: 370 FKIGDTLTSGEELHFKGLPSFSPEMFK-YIENADPMKAKQLNKGIEQLMDEG-VAQLFTN 427 K+ L + L + + + +E + P + + L + ++ D + + + + Sbjct: 321 LKLNSVLGDTKLLPQRERIENPLPLLQTTVEPSKPQQREMLLDALLEISDSDPLLRYYVD 380 Query: 428 QFNGRKIIGTVGQLQFEVIQYRLLHEYGAQCKWEPIS 464 I+ +G++Q EV L +Y + + + + Sbjct: 381 SATHEIILSFLGKVQMEVTCALLQEKYHVEIEIKEPT 417
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 28.7 bits (64), Expect = 0.005 Identities = 7/26 (26%), Positives = 17/26 (65%) Query: 63 QMNKEREAVKDDREKMREKMTAMYTE 88 ++ RE + DD++++ ++M A+Y Sbjct: 389 KIQAMRERLGDDKQRISQEMMALYKA 414
>PF06580#Sensor histidine kinase Length = 349 Score = 44.5 bits (105), Expect = 4e-07 Identities = 21/135 (15%), Positives = 53/135 (39%), Gaps = 12/135 (8%) Query: 246 IRTALNYMETRISAKVKIYTHLPDNPVLVLMNDSLFAWVIENLTKNAVDAMEGQGEITFQ 305 + + L + +++ + + V + L ++EN K+ + + G+I + Sbjct: 225 VDSYLQLASIQFEDRLQFENQINPAIMDVQVPPMLVQTLVENGIKHGIAQLPQGGKILLK 284 Query: 306 VEERDKTVRIDITDSGKGIPKSKYKTVFNPGYTTKKRGWGLGLSLVKRIIESYHGGKIFV 365 + + TV +++ ++G K+ K G GL V+ ++ +G + + Sbjct: 285 GTKDNGTVTLEVENTGSLALKN------------TKESTGTGLQNVRERLQMLYGTEAQI 332 Query: 366 KNSEVGKGTTFRIEL 380 K SE + + Sbjct: 333 KLSEKQGKVNAMVLI 347
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 30.2 bits (68), Expect = 0.020 Identities = 30/144 (20%), Positives = 55/144 (38%), Gaps = 22/144 (15%) Query: 177 RIAVIGRPNAGKSSLINAFIGEDRHIVTDIAGTTRDSIYTKYNKFGLNFYLVDTAGIRKK 236 I +G + G + N + R I T+ TK N ++DT G Sbjct: 29 AITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVN-------IIDTPG---- 77 Query: 237 GKVNEDLEYYSVIRSIRAIENSDVCVLMVDATRGIESQDLNIFSLVQKNKKGLVVCVNKW 296 ++ E Y R++ D +L++ A G+++Q +F ++K + +NK Sbjct: 78 -HMDFLAEVY------RSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKI 130 Query: 297 DLVEDKGQKVIDSYTNAIRERLAP 320 D V I+E+L+ Sbjct: 131 DQNGIDLSTVYQD----IKEKLSA 150
>SECFTRNLCASE#Bacterial translocase SecF protein signature. Length = 333 Score = 26.3 bits (58), Expect = 0.005 Identities = 7/17 (41%), Positives = 12/17 (70%) Query: 14 WVLAGLLTLLGFSCSDS 30 +A LLT+ G+S +D+ Sbjct: 207 TTVAALLTITGYSINDT 223
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 28.6 bits (63), Expect = 0.040 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 6/45 (13%) Query: 208 PQREQFPQGAEFYGTLLHEMAHSTGSPQRLNRTFGCFFGDALYAR 252 P+ ++F +G E+ L +E +R+NRT+GC+ D+ R Sbjct: 115 PETDKFVKGYEYSNCLWYE------DERRINRTYGCYGVDSSIMR 153
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 75.9 bits (187), Expect = 7e-22 Identities = 27/84 (32%), Positives = 44/84 (52%) Query: 2 TKADIINRVSEELGIDRRTVGLVIESFMKCVKDALGRERIVFLRGFGTFSLKKRAAKKAQ 61 K D+I +V+E + ++ +++ V L + V L GFG F +++RAA+K + Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGR 62 Query: 62 NIQQHTTICIPARKVPHFKPSESF 85 N Q I I A KVP FK ++ Sbjct: 63 NPQTGEEIKIKASKVPAFKAGKAL 86
>MECHCHANNEL#Bacterial mechano-sensitive ion channel signature. Length = 136 Score = 154 bits (391), Expect = 1e-51 Identities = 78/136 (57%), Positives = 101/136 (74%), Gaps = 5/136 (3%) Query: 5 SFLLDFKAFVMRGNVVDMAVGVIIGGAFGKIISSVVADIIMPPIGLLVGGTNFSELRWEL 64 S + +F+ F MRGNVVD+AVGVIIG AFGKI+SS+VADIIMPP+GLL+GG +F + L Sbjct: 2 SIIKEFREFAMRGNVVDLAVGVIIGAAFGKIVSSLVADIIMPPLGLLIGGIDFKQFAVTL 61 Query: 65 EPARVVDGVEQAAVTINYGNFIQTMLDFVIIAFAIFLFIRLLSNLRRKKEETPLPPPVPS 124 A+ AV ++YG FIQ + DF+I+AFAIF+ I+L++ L RKKEE P P P+ Sbjct: 62 RDAQGDIP----AVVMHYGVFIQNVFDFLIVAFAIFMAIKLINKLNRKKEE-PAAAPAPT 116 Query: 125 NEEKLLSEIRDLLKKQ 140 EE LL+EIRDLLK+Q Sbjct: 117 KEEVLLTEIRDLLKEQ 132
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 52.6 bits (126), Expect = 9e-10 Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 4/102 (3%) Query: 260 QEPKIVKDTIDNTKKTLESVITFRQGRTTVDNSQLPNVERIATYLKNH--KGASVLIKGY 317 P + TL+S + F + T+ ++++ + L N K SV++ GY Sbjct: 202 PAPAPAPEVQTKHF-TLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGY 260 Query: 318 ASPEGSVEVNERIARQRAEAVKKILVGKYGIAEERIVAEGQG 359 GS N+ ++ +RA++V L+ K GI ++I A G G Sbjct: 261 TDRIGSDAYNQGLSERRAQSVVDYLISK-GIPADKISARGMG 301
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 97.3 bits (242), Expect = 1e-24 Identities = 55/216 (25%), Positives = 87/216 (40%), Gaps = 28/216 (12%) Query: 178 GQAYWESSDIWNPDGRSSDKNSFVPLSFGAGVKAWLSNSFGLGLQGEYLLPVQKG----- 232 G W + N G++ D V F GV+ ++ L+ ++ + Sbjct: 119 GGMVWRADTKSNVYGKNHDTG--VSPVFAGGVEYAITPEIATRLEYQWTNNIGDAHTIGT 176 Query: 233 LPHFVQVSASVIWRIGGKSKHAAPVVRYVEIEKPVERIVERVVEKKVEVPAIIDTMACDL 292 P +S V +R G AAPVV P V K + + Sbjct: 177 RPDNGMLSLGVSYRFGQGE--AAPVVAPAPAPAPE------VQTKHFTLKS--------- 219 Query: 293 LENIHFEFDRDVITATSERTLDRLAELLKSY--PDSRFLITGYTDAKGSDSYNLTLSARR 350 ++ F F++ + + LD+L L + D ++ GYTD GSD+YN LS RR Sbjct: 220 --DVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERR 277 Query: 351 AEKVHAALIGRGVPARMIKWRGVGKRAAIISATAAD 386 A+ V LI +G+PA I RG+G+ + T + Sbjct: 278 AQSVVDYLISKGIPADKISARGMGESNPVTGNTCDN 313
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 42.6 bits (100), Expect = 5e-06 Identities = 40/142 (28%), Positives = 53/142 (37%), Gaps = 31/142 (21%) Query: 155 GQDGKDGKDGTNGRDAIPPTVTIGDNGNWYINGTDTGKPAFGKDGKDGKDGKDAVPPTVT 214 G DG D +G +G D + GD GN ++G + G D G DG D + Sbjct: 742 GADGDDLIEGNDGNDRL-----YGDKGNDTLSGGN------GDDQLYGGDGNDKL----- 785 Query: 215 IGDNGNWFVDGTDTGKKAVGQDGKSPEVAIGDNGNWYI-----NGTDTGKPAFGKDGKDG 269 IG GN +++G D G D E + N G D + G D DG Sbjct: 786 IGVAGNNYLNGGD------GDD----EFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDG 835 Query: 270 KDGKDGANGANGKSAYELWKEY 291 +G D G G Y Y Sbjct: 836 GEGDDLLKGGYGNDIYRYLSGY 857
>BINARYTOXINB#Binary toxin B family signature. Length = 764 Score = 30.0 bits (67), Expect = 0.035 Identities = 29/108 (26%), Positives = 40/108 (37%), Gaps = 9/108 (8%) Query: 212 GKSYAIINQYI-KQIIEKGYSLFLYDFKYPDLAEIAYNHLLAHLDGYKVKPKFYVINFDN 270 G+ Y I QY + EKG LY + E+ + L L K K Sbjct: 140 GRLYQIKIQYQRENPTEKGLDFKLYWTDSQNKKEVISSDNL-QLPELKQKSSN-----SR 193 Query: 271 PRESHRCNPIHPDFMTD-ISDAYE-SAYTIMLNLNRTWISKQGDFFVE 316 + S P PD D I D+ E YT+ + RT++S E Sbjct: 194 KKRSTSAGPTVPDRDNDGIPDSLEVEGYTVDVKNKRTFLSPWISNIHE 241
>INTIMIN#Intimin signature. Length = 939 Score = 27.3 bits (60), Expect = 0.017 Identities = 12/25 (48%), Positives = 15/25 (60%) Query: 88 GFAVMMDYDREKDHIRLSPGGEYRR 112 G+ V +D D D+ RL GGEY R Sbjct: 273 GYNVFIDQDFSGDNTRLGIGGEYWR 297
>56KDTSANTIGN#Rickettsia 56kDa type-specific antigen protein signature. Length = 533 Score = 33.0 bits (75), Expect = 0.003 Identities = 12/30 (40%), Positives = 15/30 (50%) Query: 108 QYEVQPPVQAQQQTQAGQQQQPEDAPQQSA 137 P QAQQQ GQQQQ + Q++ Sbjct: 331 HLNFVMPPQAQQQQGQGQQQQAQATAQEAV 360
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 36.8 bits (85), Expect = 2e-04 Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 12/98 (12%) Query: 202 SFDCKVVFPVARHDLQEDFAGNAQELDRLKKFLSENLNIQGTSLKEVHIKGYASPEGSFD 261 + V+F + L+ + LD+L LS NL+ + S V + GY GS Sbjct: 216 TLKSDVLFNFNKATLKPEGQ---AALDQLYSQLS-NLDPKDGS---VVVLGYTDRIGSDA 268 Query: 262 YNRSLAQRRTQTLSDY-ISRQYPALKNAPVYRTEGIGE 298 YN+ L++RR Q++ DY IS+ PA K G+GE Sbjct: 269 YNQGLSERRAQSVVDYLISKGIPADK----ISARGMGE 302
>SECFTRNLCASE#Bacterial translocase SecF protein signature. Length = 333 Score = 29.0 bits (65), Expect = 0.025 Identities = 12/59 (20%), Positives = 27/59 (45%), Gaps = 4/59 (6%) Query: 11 VTDRLITYLRFRDNERKQGEDEVWEKIEKGLVSKKVFSLKRRIYMGITAVAAVVIFLFF 69 + D ++ + R R+N K + + + + +L R + G+T + A+V L + Sbjct: 220 INDTVVVFDRLRENLIKYKTMPLRDVMNLSVNE----TLSRTVMTGMTTLLALVPMLIW 274
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 30.4 bits (69), Expect = 0.001 Identities = 16/85 (18%), Positives = 41/85 (48%), Gaps = 2/85 (2%) Query: 37 MCKMISMSSTISSADVKGVLEALNFWMGFHLAEGNSIELDGLGYFTPTLKS-RT-VTDEN 94 + ++ ++ ++ D ++A+ + +LA+G ++L G G F ++ R + Sbjct: 7 LIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGRNPQT 66 Query: 95 GKAKVIAEADTVSFRCATSLKEQVR 119 G+ I + +F+ +LK+ V+ Sbjct: 67 GEEIKIKASKVPAFKAGKALKDAVK 91
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 74.5 bits (183), Expect = 6e-17 Identities = 39/147 (26%), Positives = 66/147 (44%), Gaps = 6/147 (4%) Query: 173 LVAPSDGKVQLLVQGAPNLYLSAGDIFARMVPEGGETWIGRALLPIQRSGKVKVGQRVIV 232 + AP KVQ L ++ + +VPE + AL+ + G + VGQ I+ Sbjct: 330 IRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEV-TALVQNKDIGFINVGQNAII 388 Query: 233 RFTNFPDQEFGVVNGRLSSVSLVPSEDN-----YMVEIAFPNGLTTNYRKNLPVSYEMKA 287 + FP +G + G++ +++L ED + V I+ + KN+P+S M Sbjct: 389 KVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVIISIEENCLSTGNKNIPLSSGMAV 448 Query: 288 TAEIVTDDVRLIERFFQPLKKVLKEGF 314 TAEI T +I PL++ + E Sbjct: 449 TAEIKTGMRSVISYLLSPLEESVTESL 475 Score = 36.0 bits (83), Expect = 2e-04 Identities = 16/97 (16%), Positives = 34/97 (35%) Query: 27 RWGITILFIVVLVLLVGSYFFRYPDVITTEMTLTSRHPVAEVVARSSGKINELYVFNGQE 86 R + +++ + S + V T LT E+ + + E+ V G+ Sbjct: 58 RLVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGES 117 Query: 87 VKMGAPLAVVENPARTEDVFRLKKLLARYQEQPERLS 123 V+ G L + D + + L + + + R Sbjct: 118 VRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQ 154
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 28.9 bits (65), Expect = 0.003 Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 2/82 (2%) Query: 38 LCKLVAARSTVSSADVKAVLDNLNYILDLELQDGRIVQLGEFGNFRITVGSEGVEDKKKF 97 L VA + ++ D A +D + + L G VQL FGNF + + + Sbjct: 7 LIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGRNPQT 66 Query: 98 SASMIRAPKIV--FTPGFDLRE 117 + V F G L++ Sbjct: 67 GEEIKIKASKVPAFKAGKALKD 88
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 32.0 bits (72), Expect = 0.007 Identities = 12/96 (12%), Positives = 26/96 (27%), Gaps = 9/96 (9%) Query: 413 KKIRQALKQIKKQLSSNEEILKHYHIELEKMRKSSTETTASIQKSAE-LEQQIYLLEIQN 471 + +++ + K E + A ++K+ E + Sbjct: 85 DHNDELTEELSNAKEKLRKNDKSLS-EKASKIQELEARKADLEKALEGAMNFSTADSAKI 143 Query: 472 EELKQHLAVREQKKQKTETERTHLSVSDEGYNLFIK 507 + L E +K + L + EG F Sbjct: 144 KTL-------EAEKAALAARKADLEKALEGAMNFST 172
>PF06580#Sensor histidine kinase Length = 349 Score = 131 bits (332), Expect = 4e-37 Identities = 61/223 (27%), Positives = 105/223 (47%), Gaps = 9/223 (4%) Query: 171 FILLTVLLSVLLIRLLNGKQQMMLEYEQLKTEKLQTS--YNALMGQINPHFFFNSLNGLN 228 +++T + S+L K E +Q K + AL QINPHF FN+LN + Sbjct: 124 VVVVTFMWSLLYFGWHFFKNYKQAEIDQWKMASMAQEAQLMALKAQINPHFMFNALNNIR 183 Query: 229 SLIRSGEKEQTLTYLDELSNVFRYILQSNKKEMVTLAEELQFVKAYTYLLGVRYEGKLFF 288 +LI + + L LS + RY L+ + V+LA+EL V +Y L +++E +L F Sbjct: 184 ALILE-DPTKAREMLTSLSELMRYSLRYSNARQVSLADELTVVDSYLQLASIQFEDRLQF 242 Query: 289 SIQAAPALLLWHLPILSILPLIENVVKHNVISKQYPLQIDVYTTKESQLVV----SNRVQ 344 Q PA++ +P + + L+EN +KH + +I + TK++ V + Sbjct: 243 ENQINPAIMDVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSL 302 Query: 345 PKVEESTGSGIGLKNLWGRYRMLTGKD--IHISNRKDYFKVTL 385 +G GL+N+ R +ML G + I +S ++ + Sbjct: 303 ALKNTKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMV 345
>LIPPROTEIN48#Mycoplasma P48 major surface lipoprotein signature. Length = 428 Score = 31.5 bits (71), Expect = 0.005 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%) Query: 4 KRLFLFL---LALLPLVMVSCGDDDDDDLIGKWYRVSDFD 40 K++ L L A+LP V VSCG++D+ ++ K +S + Sbjct: 5 KKILLGLSPIAAILPAVAVSCGNNDESNISFKEKDISKYT 44
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 105 bits (262), Expect = 3e-29 Identities = 70/262 (26%), Positives = 121/262 (46%), Gaps = 15/262 (5%) Query: 7 IKDRVVIITGGAGILGSGIAGHLAEEGAKVVILDRAVEIGEKIVADIKAKGGEACFFQTD 66 I+ ++ ITG A +G +A LA +GA + +D E EK+V+ +KA+ A F D Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 67 VLNKEILEQNKKDILAKYGRIDALLNAAGGNMAGATIGPDNNIFDLQVDAFKKVVDLNLF 126 V + +++ I + G ID L+N AG G I L + ++ +N Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGL-------IHSLSDEEWEATFSVNST 118 Query: 127 GTVLPTMVFAEVMAQQKEGAIVNFSSESALRPLTRVVGYGAAKAAISNLTKYMAGELAIK 186 G + ++ M ++ G+IV S A P T + Y ++KAA TK + ELA Sbjct: 119 GVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELA-- 176 Query: 187 FGEGLRVNAIAPGFFLTEQNRTLMTNPDGSYTERAKSVIAH----TPFRRLGTPEELFGT 242 +R N ++PG T+ +L + +G+ + K + P ++L P ++ Sbjct: 177 -EYNIRCNIVSPGSTETDMQWSLWADENGA-EQVIKGSLETFKTGIPLKKLAKPSDIADA 234 Query: 243 IQYLISDASKFVTGTIAIVDGG 264 + +L+S + +T VDGG Sbjct: 235 VLFLVSGQAGHITMHNLCVDGG 256
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 45.6 bits (108), Expect = 2e-07 Identities = 15/105 (14%), Positives = 34/105 (32%), Gaps = 12/105 (11%) Query: 70 EVRPQVSGFIVKLCVDEGATVRKDQPLFEIDPTQYKAAVNQAKAAVAMADANVKTLTLTE 129 E++P + + ++ V EG +VRK L ++ +A + ++++ A Sbjct: 98 EIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRY---- 153 Query: 130 KNKKDLYNNAIISSFEYETAVNQLMSAKASLAQAEASLVSAEQNL 174 + S E + + V +L Sbjct: 154 --------QILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSL 190 Score = 36.0 bits (83), Expect = 3e-04 Identities = 13/100 (13%), Positives = 34/100 (34%), Gaps = 17/100 (17%) Query: 102 TQYKAAVNQAKAAVAMADANVKTLTLTEKNKKDLYNNAIISSFEYETAVNQLMSAKASLA 161 YK+ + Q ++ + A + +T+ K ++ + +L ++ Sbjct: 269 RVYKSQLEQIESEILSAKE--EYQLVTQLFKNEILD--------------KLRQTTDNIG 312 Query: 162 QAEASLVSAEQNLSFCKVTSPSNGVVGTFP-YRIGSLVSP 200 L E+ + +P + V + G +V+ Sbjct: 313 LLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTT 352
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 35.2 bits (81), Expect = 4e-04 Identities = 18/128 (14%), Positives = 44/128 (34%), Gaps = 19/128 (14%) Query: 61 EIHARVEGYLERMLFVEGKQVKQNEPLFIINSALYKARVEKAKAQLKKNEAQAAKAKRDV 120 EI ++ ++ EG+ V++ + L + + A+A K ++ +A+ + Sbjct: 98 EIKPIENSIVKEIIVKEGESVRKGDVLLKLTAL-------GAEADTLKTQSSLLQARLEQ 150 Query: 121 ERLQPLYEQHAASQL-------DLDNALASLDDSEANIAMSRADLD-----QAQLELGYT 168 R Q L ++L + S ++ ++ + + Q EL Sbjct: 151 TRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLD 210 Query: 169 TVTSPIAG 176 + Sbjct: 211 KKRAERLT 218
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 980 bits (2536), Expect = 0.0 Identities = 438/1032 (42%), Positives = 640/1032 (62%), Gaps = 12/1032 (1%) Query: 4 GFFIDRPVFSTVLSLLIVIVGVIGLMMLPVDQYPQITPPVVKISASYPGASALTVSQAVA 63 FFI RP+F+ VL++++++ G + ++ LPV QYP I PP V +SA+YPGA A TV V Sbjct: 3 NFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVT 62 Query: 64 TPIEQELNGTPGMIYMQSSSTNSGGLTITVTFDVSADADLAAVEIQNRVKLAESRLPSDV 123 IEQ +NG ++YM S+S ++G +TIT+TF D D+A V++QN+++LA LP +V Sbjct: 63 QVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEV 122 Query: 124 VQNGITVEKQSASQLMTLSLSSDDPRFDEIYLSNFATINVLDVLRRIPGVGRVSNIGSRY 183 Q GI+VEK S+S LM SD+P + +S++ NV D L R+ GVG V G++Y Sbjct: 123 QQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGAQY 182 Query: 184 YGMQIWVYPDRLANMGLTVKDIQAALKEQNSESAAGELGKQPVID-VDITLPITARGRLS 242 M+IW+ D L LT D+ LK QN + AAG+LG P + + I A+ R Sbjct: 183 -AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFK 241 Query: 243 TVKEFEDIVVRANPDGSIVRLRDVARISLEASSYSTESGINGKNAAILGIYMLPGANALE 302 +EF + +R N DGS+VRL+DVAR+ L +Y+ + INGK AA LGI + GANAL+ Sbjct: 242 NPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALD 301 Query: 303 VATNVKEAMKEISQNFPEGLEYKFPFDMTEYISQSIHEVYKTLFEALFLVILVVFLSLQN 362 A +K + E+ FP+G++ +P+D T ++ SIHEV KTLFEA+ LV LV++L LQN Sbjct: 302 TAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQN 361 Query: 363 WRAALIPTIAVPISLIGTFGFMLIMGFSLNMLTLLGLILAIGIVVDDAIVVVENVERIMH 422 RA LIPTIAVP+ L+GTF + G+S+N LT+ G++LAIG++VDDAIVVVENVER+M Sbjct: 362 MRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMM 421 Query: 423 EERLTAREATHKAMRELSGALIATSMVLAAVFVPVSFLSGITGALYRQFSITIVVSVLLS 482 E++L +EAT K+M ++ GAL+ +MVL+AVF+P++F G TGA+YRQFSITIV ++ LS Sbjct: 422 EDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALS 481 Query: 483 TVVALTLSPAMCALILRPTVGK----KNFVFRKINIWLHKGNNKYIHLLTRAITNPKRIL 538 +VAL L+PA+CA +L+P + K F N N Y + + + + + R L Sbjct: 482 VLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYL 541 Query: 539 AGFGMVLVFIFVLNRIIPTSFIPEEDQGFFTVELVMPEGATLERTRKVTDRAIEFLEKQP 598 + +++ + VL +P+SF+PEEDQG F + +P GAT ERT+KV D+ ++ K Sbjct: 542 LIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKNE 601 Query: 599 A--VAYVQNVTGSSTRVGTSQSRSTLTVILKPWEERKSSGMGVEDVMAVARKEFEYYPEI 656 V V V G S G +Q+ V LKPWEER E V+ A+ E + Sbjct: 602 KANVESVFTVNGFSF-SGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDG 660 Query: 657 LAYLNRPPVIPGLGESGGLEMQLEARGEASWENLVSATDTFM-LYASKAPELTGVSSALQ 715 P I LG + G + +L + + L A + + + A L V Sbjct: 661 FVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGL 720 Query: 716 PEIPQLYFDVDRDRAKFLGIPLTDIFSTMKAYLGSVYVNDFNMFNRIYKVYIQAEAPYRA 775 + Q +VD+++A+ LG+ L+DI T+ LG YVNDF R+ K+Y+QA+A +R Sbjct: 721 EDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRM 780 Query: 776 TRDNIGLFFVRAQNGSMVPLTALGTTSYTTGPGTIKKFNMFSTAAISAVAAPGYSSGEAM 835 +++ +VR+ NG MVP +A T+ + G ++++N + I AAPG SSG+AM Sbjct: 781 LPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAM 840 Query: 836 AAMQRIAREHLPDNIGLEWSGLSYQEKKAGGQTGMILVLVFLFVFLFLAAQYESWIVPIA 895 A M+ +A + LP IG +W+G+SYQE+ +G Q ++ + F+ VFL LAA YESW +P++ Sbjct: 841 ALMENLASK-LPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVS 899 Query: 896 VILSLPVAALGAYLGIWATGLHNDVYFQIGLVTLIGLAAKNAILIVEFAK-VQVDAGVDV 954 V+L +P+ +G L NDVYF +GL+T IGL+AKNAILIVEFAK + G V Sbjct: 900 VMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGV 959 Query: 955 VQAAIHAARMRFRPILMTSLAFVLGMLPMVLASGPGSASRHSIGTGVFFGMLVAITVGIV 1014 V+A + A RMR RPILMTSLAF+LG+LP+ +++G GS +++++G GV GM+ A + I Sbjct: 960 VEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIF 1019 Query: 1015 LVPFFFVLIYKI 1026 VP FFV+I + Sbjct: 1020 FVPVFFVVIRRC 1031
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 28.2 bits (62), Expect = 0.044 Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 18/92 (19%) Query: 186 LETELTNRVLVMVEDTLADLGPYVIPAEQREVYKTVGGVPHLDSSVTIFGEVVDGFDIVE 245 ++TE TN L ++ T L IP + E+Y +GG I+ D D+VE Sbjct: 67 VKTEFTNETLDKIQQTQDLLKK--IPKDVLEIYSELGG--------EIY--FTDI-DLVE 113 Query: 246 KMS---LVKTDKNDRPIR--DVMIKSTKVFQK 272 L + +KN R V S VF+K Sbjct: 114 HKELQDLSEEEKNSMNSRGEKVPFASRFVFEK 145
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 37.1 bits (86), Expect = 3e-05 Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 18/121 (14%) Query: 3 KIVIIGATGYVGSAILKEALGRGHQVKAI-----VRDPS----KLTLI-HPHLKVVGGSV 52 K ++ GA G++G + K L GHQV I D S +L L+ P + + Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 53 IDTDFLSR--ELAKSDAVI-----SAFNPGWSNPNIYEET-LEGYGSILCAVRNSGVHRF 104 D + ++ + V A NP+ Y ++ L G+ +IL R++ + Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 105 L 105 L Sbjct: 122 L 122
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 73.7 bits (181), Expect = 1e-15 Identities = 23/102 (22%), Positives = 49/102 (48%), Gaps = 2/102 (1%) Query: 525 VLVVDDDDVSCEIACENLQELGMKPEWVLSGQDAVQKVSDGNKYFAIIIDLMMPNMNGIE 584 +LV DDD + + L G + + ++ G ++ D++MP+ N + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAG-DGDLVVTDVVMPDENAFD 64 Query: 585 TTYKIRECVGPDIPIIIISAYDYSGYEIEALKAGVNGFICKP 626 +I++ PD+P++++SA + I+A + G ++ KP Sbjct: 65 LLPRIKK-ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKP 105 Score = 72.9 bits (179), Expect = 1e-15 Identities = 25/115 (21%), Positives = 48/115 (41%), Gaps = 7/115 (6%) Query: 663 RILVVEDNELNREIAYELLQETGAEIETASDGLEAVNKVADSPEGYYDFIIMDIQMPVMD 722 ILV +D+ R + + L G ++ S+ +A D ++ D+ MP + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGD---GDLVVTDVVMPDEN 61 Query: 723 GLEATRQIRLLDRQDTKDLPIVAMSANAFAEDVRLSLEAGMNEHIAKPIEIDRLY 777 + +I+ DLP++ MSA + E G +++ KP ++ L Sbjct: 62 AFDLLPRIKKAR----PDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELI 112
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 159 bits (404), Expect = 3e-48 Identities = 85/347 (24%), Positives = 154/347 (44%), Gaps = 35/347 (10%) Query: 4 KILVAGGTGYIGSHTTVELQNAGYDVVIIDDLSNSNIEVL--DGIEKITGIRPEFIKLDL 61 K LV G G+IG H + L AG+ VV ID+L++ L +E + +F K+DL Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 62 KDKEGTREALKAHPGINGIILFAASKAVGESVQQPLKYYRNNVVTLVNLLELMPEFNIEG 121 D+EG + + + + AV S++ P Y +N+ +N+LE I+ Sbjct: 62 ADREGMTDLFASG-HFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 122 IVFSSSCTVYGQPDPENLPVTEDAPIKPATSPYGNTKQINEEIIRDTIHANAPFKSIILR 181 ++++SS +VYG +P + D + S Y TK+ NE + T + LR Sbjct: 121 LLYASSSSVYG--LNRKMPFSTDDSVDHPVSLYAATKKANELMAH-TYSHLYGLPATGLR 177 Query: 182 YFNPIGAHPSAEIGELPNGVPQNLIPYLTQTAIGIRKELSVFGDDYDTPDGSCIRDYINV 241 +F G P G P ++ + A+ K + V+ G RD+ + Sbjct: 178 FFTVYG----------PWGRP-DMALFKFTKAMLEGKSIDVYNY------GKMKRDFTYI 220 Query: 242 VDLAKAHVIAMDRMLGGKTEENVEY------------FNLGTGNGVTVLELINTFEKATG 289 D+A+A + D + T+ VE +N+G + V +++ I E A G Sbjct: 221 DDIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALG 280 Query: 290 VKVPHKIVGRREGDIEKVWANPERANKVLGWTAKETLSDTLASAWKW 336 ++ ++ + GD+ + A+ + +V+G+T + T+ D + + W Sbjct: 281 IEAKKNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNW 327
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.8 bits (69), Expect = 0.004 Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 7/50 (14%) Query: 38 GPSGCGKSTLLNILGLLDNPTGGNYYLVDKEVGHLKEKERTQVRKGNIGF 87 G G GKSTL+N L G + D K+ + G + + Sbjct: 603 GTGGIGKSTLINTL-------VGLDFFSDTHFDIGTGKDSYEQIAGIVAY 645
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 65.9 bits (161), Expect = 8e-18 Identities = 23/84 (27%), Positives = 41/84 (48%) Query: 2 NRTRLVKRIADRLLIEEEEAALFIRVWEEEVEEALIREGEVGLMGFGAFTLWKQVGRPGR 61 N+ L+ ++A+ + ++++A + V L + +V L+GFG F + ++ R GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGR 62 Query: 62 NPRDNTSCMIAPRNSVKFKPGKFL 85 NP+ I FK GK L Sbjct: 63 NPQTGEEIKIKASKVPAFKAGKAL 86
>NEISSPPORIN#Neisseria sp. porin signature. Length = 348 Score = 28.8 bits (64), Expect = 0.023 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 4/62 (6%) Query: 76 TLFMAIKAVVKAQMSVADPEVHDAAVKINQLIIDY--KLNVRGQLDKETGLLINIIYDLE 133 TL+ AIKA V+ SV + + V+ I D+ K+ +GQ D GL ++ LE Sbjct: 22 TLYGAIKAGVQTYRSVEHTDGKVSKVETGSEIADFGSKIGFKGQEDLGNGL--KAVWQLE 79 Query: 134 NK 135 Sbjct: 80 QG 81
>FIMBRILLIN#Porphyromonas gingivalis: fimbrillin protein signature. Length = 348 Score = 36.9 bits (85), Expect = 9e-05 Identities = 58/276 (21%), Positives = 101/276 (36%), Gaps = 54/276 (19%) Query: 141 MGSKFLEITSLEPGTNYYGKEEIFTNKPAEYSFYSTSNIEVYRTASRIDFEKISLKWSEA 200 M ++ +E+T L G NYYG + + +E+ R +R+ F +I ++ S + Sbjct: 94 MTAEPVEVT-LVAGNNYYG----YDGSQGGNQISQDTPLEIKRVHARMAFTEIKVQMSPS 148 Query: 201 DAGDLLQENARFHLKQVYVVDAK--STTYLADRKYGENNYSVEITSDPAYWHGKPGEDYL 258 F + +Y + AK S + A ++ Y ++ Sbjct: 149 -----YVNKYNFAPENIYALVAKKESNLFGASLANSDDAYLTGSLTNFN----------- 192 Query: 259 ESLNLFPREGDNTSATILSDGEWDITDNPLRCYITENT----DEAQPTMLVLKGDILHKD 314 + + D + P Y+ E+T +PT+L +KG + D Sbjct: 193 ---GAYSPANYTHVDWLGRDYTEPSNNAPQGFYVLESTYAQNAGLRPTILCVKGKLTKHD 249 Query: 315 TDTPILSDRYYFVKLLNLIDSDNKETIYPGVI----------------RNKVIR-----I 353 TP+ S+ I +DN T Y V+ +NK+ R I Sbjct: 250 G-TPLSSEEMTAAFNAGWIVADNNPTTYYPVLVNFNSNNYTYDNGYTPKNKIERNHKYDI 308 Query: 354 SATITGKGSGDEE--YKENAYVTVTVTPENWSVETQ 387 TITG G+ + E E+A++ V T W + Q Sbjct: 309 KLTITGPGTNNPENPITESAHLNVQCTVAEWVLVGQ 344
>FIMBRILLIN#Porphyromonas gingivalis: fimbrillin protein signature. Length = 348 Score = 62.4 bits (151), Expect = 5e-13 Identities = 82/363 (22%), Positives = 145/363 (39%), Gaps = 60/363 (16%) Query: 48 KATGDDQNALPGESDIHNLSAFVFNSDGSALIGYGRAENPDPDKLVITDIETTPERVMLV 107 K + ++ ES + L+ V+N G AEN + DI+ + + LV Sbjct: 4 KTSNPNRAFGEDESKVAKLTVMVYN--GEQQEAIKSAENATK----VEDIKCSAGQRTLV 57 Query: 108 VLANIPGNIDSSVGNYAGLQSRLADLSSQTQESLTFSTQVVRTEQALVKGEDNLIGYTAG 167 V+AN G + + A +++ +L+++ QE+ + + +N GY Sbjct: 58 VMANT-GEMKLAGKTLAEVKALTTELTAENQEA-AGLIMTAEPVEVTLVAGNNYYGYDGS 115 Query: 168 TNIDNIS--TPLLLTRIAARVEMNTIETRFAGSLLEGKTVRIDHIALANVKSNSYYFSEG 225 + IS TPL + R+ AR+ I+ + + S + ++I K S F Sbjct: 116 QGGNQISQDTPLEIKRVHARMAFTEIKVQMSPSYVNKYNFAPENIYALVAKKESNLFG-- 173 Query: 226 DWGKVEVPAGQANLLYGAGVTEAASLFAPGSHPS-DYLGSDFSLTITDNTPSLTPVFE-T 283 + L G+ +T ++P ++ D+LG D++ ++N P V E T Sbjct: 174 ----ASLANSDDAYLTGS-LTNFNGAYSPANYTHVDWLGRDYT-EPSNNAPQGFYVLEST 227 Query: 284 YAFENSSSDTDPTLLVVKATLVETNQTRIFTSP------------------------INR 319 YA ++ PT+L VK L + + T +S +N Sbjct: 228 YA---QNAGLRPTILCVKGKLTKHDGTP-LSSEEMTAAFNAGWIVADNNPTTYYPVLVNF 283 Query: 320 NGVLNGYDH-------NYVKRNYIYRLHVTFTETSFDPDEN---DDASLDVRVEVAGWGY 369 N N Y + N ++RN+ Y + +T T + EN + A L+V+ VA W Sbjct: 284 NS--NNYTYDNGYTPKNKIERNHKYDIKLTITGPGTNNPENPITESAHLNVQCTVAEWVL 341 Query: 370 VHQ 372 V Q Sbjct: 342 VGQ 344
>FIMBRILLIN#Porphyromonas gingivalis: fimbrillin protein signature. Length = 348 Score = 42.3 bits (99), Expect = 2e-06 Identities = 71/333 (21%), Positives = 126/333 (37%), Gaps = 73/333 (21%) Query: 83 AFRKIDDAQDTIRVGLKTGTYKLLVIANAGEMSSFKPEKYYDKTVSLADQVGKSAGQVGE 142 A + ++A + G L+V+AN GEM K + +L ++ +A Sbjct: 34 AIKSAENATKVEDIKCSAGQRTLVVMANTGEMKL--AGKTLAEVKALTTEL--TAENQEA 89 Query: 143 KGFIMTNIAQDVEIKKTAE------NDGINLISE----KVKRVVGRVDLSQVDIDNDWLD 192 G IMT +V + + G N IS+ ++KRV R+ +++ + Sbjct: 90 AGLIMTAEPVEVTLVAGNNYYGYDGSQGGNQISQDTPLEIKRVHARMAFTEIKVQMSPSY 149 Query: 193 KNLKGMKFKLSQVFLVNVRPQSYLYDTKTGWTLPEGATLHTMEFIEDHYLCGIEEKLQVG 252 N F ++ + + +S L+ GA+L +D YL G L Sbjct: 150 VNK--YNFAPENIYALVAKKESNLF----------GASL---ANSDDAYLTGS---LTNF 191 Query: 253 GEIATGSEYAEYLTTATDVTITGDNSELHKGIASFYAMTNSFAKD-GVDPVILYLKGSWY 311 + + Y D T +N+ FY + +++A++ G+ P IL +KG Sbjct: 192 NGAYSPANYTHVDWLGRDYTEPSNNAP-----QGFYVLESTYAQNAGLRPTILCVKGKLT 246 Query: 312 DATGKP----ALTD--------------RYYRIKL---------------QNGVQRNTIY 338 G P +T YY + + +N ++RN Y Sbjct: 247 KHDGTPLSSEEMTAAFNAGWIVADNNPTTYYPVLVNFNSNNYTYDNGYTPKNKIERNHKY 306 Query: 339 KIEATLKGKGSPDPD--IKDDVTLSVTITVKSW 369 I+ T+ G G+ +P+ I + L+V TV W Sbjct: 307 DIKLTITGPGTNNPENPITESAHLNVQCTVAEW 339
>FIMBRILLIN#Porphyromonas gingivalis: fimbrillin protein signature. Length = 348 Score = 78.5 bits (193), Expect = 3e-18 Identities = 92/357 (25%), Positives = 145/357 (40%), Gaps = 57/357 (15%) Query: 50 DSGIERLYVAIFGTSGENADKLIVSREVTQTNTVEDITPLKAGTIRMLLVANAPEGTFDG 109 +S + +L V ++ +GE + + + T+ VEDI AG ++++AN E G Sbjct: 16 ESKVAKLTVMVY--NGEQQEAIKSAENATK---VEDI-KCSAGQRTLVVMANTGEMKLAG 69 Query: 110 LTTLDQFLALTK--TIENEDTAP-TMSSGVQTYTLKPGKNTIGLQ-KTGANQISA-SPVT 164 TL + ALT T EN++ A M++ TL G N G G NQIS +P+ Sbjct: 70 -KTLAEVKALTTELTAENQEAAGLIMTAEPVEVTLVAGNNYYGYDGSQGGNQISQDTPLE 128 Query: 165 IYRTIARVHLNQLFLRPLEEYSNGASFKLESVFMANVKNYSRYISMEDWGAVEVTDRSLS 224 I R AR+ ++ ++ Y N +F E+++ K S +GA Sbjct: 129 IKRVHARMAFTEIKVQMSPSYVNKYNFAPENIYALVAKKESNL-----FGASLANS---D 180 Query: 225 DFFLTGANPDVEGIYKEGSSKLSDKLLTTYNYDFRTATDETGLIANCAANYTVFENMQEA 284 D +LTG+ + G Y + D L Y T N + V E+ Sbjct: 181 DAYLTGSLTNFNGAYSPANYTHVDWLGRDY----------TEPSNNAPQGFYVLESTYAQ 230 Query: 285 TWH---TLLVLHGTYRYTDKNGNP------------------RNVDTYYPVIVNRQHDQI 323 T+L + G + T +G P N TYYPV+VN + Sbjct: 231 NAGLRPTILCVKG--KLTKHDGTPLSSEEMTAAFNAGWIVADNNPTTYYPVLVNFNSNNY 288 Query: 324 S---NVTNHLYVRRNVIYSIDVVIKGPGSDTPFDP-SDDATLTSMIEVQAWGEIVEN 376 + T + RN Y I + I GPG++ P +P ++ A L V W + +N Sbjct: 289 TYDNGYTPKNKIERNHKYDIKLTITGPGTNNPENPITESAHLNVQCTVAEWVLVGQN 345
>FIMBRILLIN#Porphyromonas gingivalis: fimbrillin protein signature. Length = 348 Score = 52.7 bits (126), Expect = 9e-10 Identities = 65/308 (21%), Positives = 112/308 (36%), Gaps = 31/308 (10%) Query: 103 IDAKAGAVNVLVVVNPPAKVFEGKT--NIDDFKKAISKAELSSAQPLMASAVKGYNLVKG 160 I AG ++V+ N GKT + ++ +A +M + LV G Sbjct: 47 IKCSAGQRTLVVMANTGEMKLAGKTLAEVKALTTELTAENQEAAGLIMTAEPVEVTLVAG 106 Query: 161 RNIISLTDEGFAAYDKQFEENIKVFRNVANIDLESITLKPRADFATDAKLVVSKAFIMHY 220 N D + +++ R A + I ++ + + + Sbjct: 107 NNYYGY-DGSQGGNQISQDTPLEIKRVHARMAFTEIKVQMSPSYVNKYNFAPENIYALVA 165 Query: 221 RNDVKVFGAATAWCPVVNDTESDDNIVPNLTGAEGIYTHSFSQNFTGTNEVKVSAENGE- 279 + + +FGA+ D + +LT G Y+ + + N Sbjct: 166 KKESNLFGASL-------ANSDDAYLTGSLTNFNGAYSPANYTHVDWLGRDYTEPSNNAP 218 Query: 280 --FFVYDNSSSSRIANVKNATALVIQGTYTYTANNGQTVTSKD------AYWTVYINNNE 331 F+V +++ + T L ++G T +G ++S++ A W V NN Sbjct: 219 QGFYVLESTYAQ--NAGLRPTILCVKGKLTKH--DGTPLSSEEMTAAFNAGWIVADNNPT 274 Query: 332 TASEV---KNDSGYT----NLAHFGVLRNVKYAINATITGPGSDNPETP-TEAASITSNI 383 T V N + YT + RN KY I TITGPG++NPE P TE+A + Sbjct: 275 TYYPVLVNFNSNNYTYDNGYTPKNKIERNHKYDIKLTITGPGTNNPENPITESAHLNVQC 334 Query: 384 EIVPWGTV 391 + W V Sbjct: 335 TVAEWVLV 342
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 83.7 bits (207), Expect = 4e-19 Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 6/128 (4%) Query: 337 TGKKILIIDDSDQIRWFLKLALGKE-YQIFEARNGEEGVIMAKKEHPDGILCDVMMPVKD 395 TG IL+ DD IR L AL + Y + N D ++ DV+MP ++ Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 396 GFTTCREIKTNPATSQTVVIMLTAKVENEDVIAGIEAGADDYITKPFDLEV---LRSKLI 452 F IK A V++++A+ I E GA DY+ KPFDL + + + Sbjct: 62 AFDLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119 Query: 453 SQLKRREQ 460 ++ KRR Sbjct: 120 AEPKRRPS 127
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 59.3 bits (144), Expect = 2e-15 Identities = 24/88 (27%), Positives = 45/88 (51%) Query: 2 NKTQIVRMLAERLDITLVDSRIYLNTLLDIVVEGVITDEKVAIHEFGKIFILPQSRRQVR 61 NK ++ +AE ++T DS ++ + V + EKV + FG + ++ R+ R Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGR 62 Query: 62 NPRTGEKVMLNPRKTIRLKPCEALIEKI 89 NP+TGE++ + K K +AL + + Sbjct: 63 NPQTGEEIKIKASKVPAFKAGKALKDAV 90
>FIMBRILLIN#Porphyromonas gingivalis: fimbrillin protein signature. Length = 348 Score = 32.7 bits (74), Expect = 0.003 Identities = 33/126 (26%), Positives = 49/126 (38%), Gaps = 10/126 (7%) Query: 389 YYANYKFYNSIKAMKDAGLKLDGITEDSTDEELAKFFVKRYRKDPEGNNYYCYYNYWIRH 448 Y N +I +K K DG + EE+ F + NN YY + Sbjct: 228 YAQNAGLRPTILCVKGKLTKHDG--TPLSSEEMTAAFNAGWI--VADNNPTTYYPVLVNF 283 Query: 449 LDNNKENEMGVMEF-AIVRNNIYRLLVTNISGLGSGTPEIDPEKPDEYEAYLKMDFNVLP 507 NN + G I RN+ Y + +T I+G G+ PE P A+L + V Sbjct: 284 NSNNYTYDNGYTPKNKIERNHKYDIKLT-ITGPGTNNPE----NPITESAHLNVQCTVAE 338 Query: 508 WIVRNQ 513 W++ Q Sbjct: 339 WVLVGQ 344
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 73.6 bits (181), Expect = 5e-21 Identities = 25/86 (29%), Positives = 39/86 (45%) Query: 1 MMNKRELIYSIAEQTGYTQSAVRKVLNTFIDTVFNEVKSENKVRIGGLGVFSPVLQKSRP 60 M NK++LI +AE T T+ ++ V + + KV++ G G F + +R Sbjct: 1 MANKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARK 60 Query: 61 VRNPQTMEPIMLAPRTTIKFRTADDL 86 RNPQT E I + F+ L Sbjct: 61 GRNPQTGEEIKIKASKVPAFKAGKAL 86
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 34.5 bits (79), Expect = 6e-04 Identities = 27/112 (24%), Positives = 40/112 (35%) Query: 118 LEFKPEDRQMLVNKAVANIQRKDYDDAEKTFDVLMKAHPKYSMNYLTRGAMYTEKGDTVK 177 E + + L + A Q Y+DA K F L S +L GA G Sbjct: 29 NEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDL 88 Query: 178 ALADYNKAIEMDPYYAPSYGNRAILLYQTNDLKGALADLNEAIRLNTRESGY 229 A+ Y+ MD + A L Q +L A + L A L ++ + Sbjct: 89 AIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELIADKTEF 140 Score = 31.8 bits (72), Expect = 0.006 Identities = 17/105 (16%), Positives = 39/105 (37%), Gaps = 3/105 (2%) Query: 58 EPYFYRAVAKINLDDYKGAEEDCTLCLQRNPFLVQAYYARGIARQSQEKYAEAIADYDKG 117 E + A + Y+ A + + + + + G RQ+ +Y AI Y G Sbjct: 37 EQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYG 96 Query: 118 LEFKPEDRQMLVNKAVANIQRKDYDDAEKTFDV---LMKAHPKYS 159 ++ + + A +Q+ + +AE + L+ ++ Sbjct: 97 AIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELIADKTEFK 141
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 31.0 bits (70), Expect = 6e-04 Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 1/28 (3%) Query: 40 VISTLPGTVVK-IYVEKGQEVEAGQLLL 66 I + ++VK I V++G+ V G +LL Sbjct: 98 EIKPIENSIVKEIIVKEGESVRKGDVLL 125
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 63.0 bits (153), Expect = 3e-13 Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 8/110 (7%) Query: 260 PECEEVVTNVVNNYVDNVVYFRLNSSKIDKNQQISIYNTAEFMKANNAP---IKVIGYAD 316 EV T + + + V F N + + Q ++ + + + V+GY D Sbjct: 205 APAPEVQTK--HFTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD 262 Query: 317 KNTGTSKYNMGLSEKRAKAVAKELIDKYGINSNQITIEWRGSDEQPYSEN 366 G+ YN GLSE+RA++V LI K GI +++I+ G P + N Sbjct: 263 -RIGSDAYNQGLSERRAQSVVDYLISK-GIPADKISARGMGE-SNPVTGN 309
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 85.2 bits (211), Expect = 1e-20 Identities = 73/357 (20%), Positives = 123/357 (34%), Gaps = 51/357 (14%) Query: 6 LITGITGQDGAYLAEYLVKKGYTVHGIKRRSSMFNTDRIDHLYQDPH--------VENRN 57 L+TG G G ++++ L++ G+ V GI N Y D + Sbjct: 4 LVTGAAGFIGFHVSKRLLEAGHQVVGIDN----LND------YYDVSLKQARLELLAQPG 53 Query: 58 LILHYGDLTDSLNLTRIIGEVQPDEIYNLAAMSHVKVSFDTPEYTANADGLGVLRILEAV 117 H DL D +T + + ++ V+ S + P A+++ G L ILE Sbjct: 54 FQFHKIDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGC 113 Query: 118 RLLNLIPKTRIYQASTSELYGLVQEVPQKETTPF-YPRSPYAVAKLYGYWITVNYREAYK 176 R + + AS+S +YGL +++P +P S YA K + Y Y Sbjct: 114 RHNKI---QHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYG 170 Query: 177 MHASNGILFNHESPLRGETFVTRKVTRAVSRIALGMQEKVYMGNLSSKRDWGHAKDYVRA 236 + A+ F P K T+A + G VY KRD+ + D A Sbjct: 171 LPATGLRFFTVYGPWGRPDMALFKFTKA---MLEGKSIDVY-NYGKMKRDFTYIDDIAEA 226 Query: 237 MYAILQQDEPSDYVIATGITTTIRDFISKAFKEIGVEVIFKGENVNEVAVLNYIDEKMFI 296 + + +D T IG N + V +++YI + Sbjct: 227 IIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIG--------NSSPVELMDYIQA---L 275 Query: 297 EK-VGEAYLENFKERIGEEVVGIDPQYFRPTEVDLLIGDATKARTRLGWEPKYTLDT 352 E +G +N +P +V D +G+ P+ T+ Sbjct: 276 EDALGIEAKKNMLP-------------LQPGDVLETSADTKALYEVIGFTPETTVKD 319
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 76.7 bits (189), Expect = 8e-18 Identities = 71/378 (18%), Positives = 130/378 (34%), Gaps = 77/378 (20%) Query: 6 KIFVAGHRGLVGSAILKNLQQKGYT-----NF-----VLRTHA-------------ELDL 42 K V G G +G + K L + G+ N V A ++DL Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 43 TDQYAVNEFFATEKPEYVFLAAAHVGGIMANSRYRAD----FIYINLMIQNNVIHASYIN 98 D+ + + FA+ E VF++ + RY + + NL N++ N Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLA-----VRYSLENPHAYADSNLTGFLNILEGCRHN 116 Query: 99 NVKKLLFLGSTCIYPGEAPQPMPEDCLLTSPLEYTNEPYAIAKIAGIKMCESYNLQYGTN 158 ++ LL+ S+ +Y P D + P+ YA K A M +Y+ YG Sbjct: 117 KIQHLLYASSSSVYGLNRKMPFSTDDSVDHPV----SLYAATKKANELMAHTYSHLYGLP 172 Query: 159 YIAVMPTNLYGPNDNFNLETSHVLPAMIRKIHLGKCLHTDNWEALRKDLNARPVEGVAGN 218 + +YGP ++ L + + GK + N+ +++D Sbjct: 173 ATGLRFFTVYGPWGRPDM----ALFKFTKAMLEGKSIDVYNYGKMKRDF----------T 218 Query: 219 ATDNNILAILAKYGIYPGKVQLWGTGKPLREFLWSEEMADASVYIMEHIDFQDVRPEGNE 278 D+ AI+ + P W + +A VY Sbjct: 219 YIDDIAEAIIRLQDVIPHADTQWTVETGTP----AASIAPYRVY---------------- 258 Query: 279 VRNTHINIGTGKELSIKEVATLIQEKIGFDGELVFDASKPDGTLRKLTDVSKLH-ALGWH 337 NIG + + + +++ +G + + +P L D L+ +G+ Sbjct: 259 ------NIGNSSPVELMDYIQALEDALGIEAKKNMLPLQPGDVLETSADTKALYEVIGFT 312 Query: 338 HKIEIAEGVEFLYNWYLD 355 + + +GV+ NWY D Sbjct: 313 PETTVKDGVKNFVNWYRD 330
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 61.8 bits (150), Expect = 3e-13 Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 7/114 (6%) Query: 4 IIVDDEPLGRKAIQLLIQDTPVLSLCGSFGDAVSAGKFMQASPVDLVFLDIKMPGVNGLE 63 ++ DD+ R + + +A + +++ A DLV D+ MP N + Sbjct: 7 LVADDDAAIRTVLNQALSRAGYD--VRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 64 FARMIPS---DTLVIFVTAYA--EYALDSYEVDAIDYLVKPIEIERFKRAVQKA 112 I D V+ ++A A+ + E A DYL KP ++ + +A Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRA 118
>ARGREPRESSOR#Bacterial arginine repressor signature. Length = 149 Score = 27.9 bits (62), Expect = 0.027 Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 3/52 (5%) Query: 95 LIRIAPDGKS--YEIIAEQPVAPTSELPSHLMMHNYLRSLGRDNKVVLHTHP 144 L+++ + S Y + A+Q P S+L +M +++ + +VL T P Sbjct: 50 LVKVPTNNGSYKYSLPADQRFNPLSKL-KRSLMDAFVKIDSASHLIVLKTMP 100
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 69.8 bits (171), Expect = 1e-15 Identities = 37/177 (20%), Positives = 74/177 (41%), Gaps = 10/177 (5%) Query: 3 NVLIIGSTGQIGSELTMELRKRYDG----DIVAGY--ISGAEPKGELLESGPSALV--DI 54 L+ G+ G IG ++ L + D + Y +S + + ELL D+ Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 55 TNEQQIAETVSKYKIDTIYNLAALLSA-VAEAKPQLAWKIGMGGLFNVLEVAREMKC-AV 112 + + + + + + ++ L+ + P + G N+LE R K + Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 113 FTPSSIGVFGNNTPKDKTPQDTIRNPRTMYGVTKVSGELLSDYYNIRFGVDTRSVRF 169 SS V+G N + D++ +P ++Y TK + EL++ Y+ +G+ +RF Sbjct: 122 LYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRF 178
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 29.2 bits (65), Expect = 0.020 Identities = 17/132 (12%), Positives = 41/132 (31%), Gaps = 16/132 (12%) Query: 59 QRLIKAAKDAMDSHGYGMSSVRFICGTQDLHKELEAAISDYFKTEDTILYAACF------ 112 Q ++ A G +S+ I + + AI +FK + + Sbjct: 14 QHILDVALRLFSQQGVSSTSLGEIAKAAGVTR---GAIYWHFKDKSDLFSEIWELSESNI 70 Query: 113 -DANGGLFEPLFGEEDAIISDALNH----ASIIDGVRLCKAKRYRYANA--DMADLERCL 165 + G+ +++ + L H + RL + +MA +++ Sbjct: 71 GELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQ 130 Query: 166 QEAQAQRHRIIA 177 + + + I Sbjct: 131 RNLCLESYDRIE 142
>PF05272#Virulence-associated E family protein Length = 892 Score = 35.4 bits (81), Expect = 0.001 Identities = 19/110 (17%), Positives = 40/110 (36%), Gaps = 13/110 (11%) Query: 623 WWEQDLDSLWAENWQQVLTYYKKHNRWPKSNEGKAGSWCNTQR--------KNRKQGLLS 674 W ++ L+AE L Y R+ S E + + Q + R LL+ Sbjct: 721 WLQKFRGQLFAE----ALHLYLAGERYFPSPEDEEIYFRPEQELRLVETGVQGRLWALLT 776 Query: 675 AE-RIARMDAEGFIWTIDDVWMENYEKLQQFFSENNRWPTARENKLGSWC 723 E A A ++++ ++ + +Q ++ + E ++ W Sbjct: 777 REGAPAAEGAAQKGYSVNTTFVTIADLVQALGADPGKSSPMLEGQVRDWL 826
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 40.3 bits (94), Expect = 6e-06 Identities = 29/157 (18%), Positives = 65/157 (41%), Gaps = 6/157 (3%) Query: 198 KEKGTIEQINVTPVPKTLFLLSKLIPFWVIGFILLTIGAIVAWIIYGLLPVGNMGIIYLF 257 + + T E + T + +L ++ + +VA G + ++Y Sbjct: 95 EGQRTWEAMLYTQLRLGDIVLGEMAWAATKAALAGAGIGVVA-AALGYTQ--WLSLLYAL 151 Query: 258 AAVYL--ITFTGLGLAISSISSNQQQAMFTAFFFLIIFALLSGLFTPISSMPQWAQTITL 315 + L + F LG+ +++++ + +F + LSG P+ +P QT Sbjct: 152 PVIALTGLAFASLGMVVTALAPSYDYFIFYQTLVITPILFLSGAVFPVDQLPIVFQTAAR 211 Query: 316 FNPVRYFIEVMRMVYLKGSSFSDLSGHFIVVCLFAVL 352 F P+ + I+++R + L D+ H +C++ V+ Sbjct: 212 FLPLSHSIDLIRPIMLGHPV-VDVCQHVGALCIYIVI 247
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 29.4 bits (66), Expect = 0.043 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 11/48 (22%) Query: 319 GIADTIVRAHKRGKKVIGICGGYQMMGARLEDPEGIEGNLPAVPGLGL 366 + I AH GK V G+CG +M G D I P + GLGL Sbjct: 485 LVDMVIKAAHSEGKWV-GMCG--EMAG----DEVAI----PLLLGLGL 521
>SECGEXPORT#Protein-export SecG membrane protein signature. Length = 110 Score = 42.2 bits (99), Expect = 3e-08 Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 7/114 (6%) Query: 1 MYVFISILILIASILLILIVLIQNSKGGGLASGF--SSSNQIMGVRKTTDFLEKATWVLA 58 MY + ++ LI +I L+ ++++Q KG + + F +S + G + +F+ + T +LA Sbjct: 1 MYEALLVVFLIVAIGLVGLIMLQQGKGADMGASFGAGASATLFGSSGSGNFMTRMTALLA 60 Query: 59 GFVIVCSIVITAFIPRATTTTQSEIKEQINNAVTIDPNTVAPNFGTAQPSANAP 112 + S+V+ I T SE + A T AP A+P+++ P Sbjct: 61 TLFFIISLVL-GNINSNKTNKGSEWENLSAPAKTEQTQPAAP----AKPTSDIP 109
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 393 bits (1010), Expect = e-136 Identities = 135/384 (35%), Positives = 197/384 (51%), Gaps = 42/384 (10%) Query: 11 QRFGIIGNSPGLNRAIDVALQVAPTDLSVLITGESGVGKETFPQIIHQNSPRKHGQYIAV 70 ++G S + V ++ TDL+++ITGESG GKE + +H R++G ++A+ Sbjct: 135 DGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAI 194 Query: 71 NCGAIPEGTIDSELFGHEKGSFTGALADRKGYFEVADGGTIFLDEVGELPIPTQARLLRV 130 N AIP I+SELFGHEKG+FTGA G FE A+GGT+FLDE+G++P+ Q RLLRV Sbjct: 195 NMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRV 254 Query: 131 LETGEFIKVGSSKVLKTNVRIVAATNVNLIQAVADGKFREDLYYRLNTVPIQIPPLRERP 190 L+ GE+ VG ++++VRIVAATN +L Q++ G FREDLYYRLN VP+++PPLR+R Sbjct: 255 LQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLNVVPLRLPPLRDRA 314 Query: 191 DDIILLFRKFAGDCAEKYRMPPVRLDDEARQLLTSYRWPGNVRELKNITERISVIEENRD 250 +DI L R F AEK + R D EA +L+ ++ WPGNVREL+N+ R++ + Sbjct: 315 EDIPDLVRHFV-QQAEKEGLDVKRFDQEALELMKAHPWPGNVRELENLVRRLTALYPQDV 373 Query: 251 ITADVLRLYLPDLNVEKYPVLVKKQDNDQKFFNSEREILYQVLFDMKKDVNDLKKLVHDI 310 IT +++ L ++ D Sbjct: 374 ITREIIENELRS------------------------------------EIPDSPIEKAAA 397 Query: 311 MGGKMPMPVADETPYAHPIRPVHSAPIQEAEAVEEEETLSLEEVEKEMIRKALEKHNGRR 370 G + + A E A L E+E +I AL G + Sbjct: 398 RSGSLSISQAVEENMRQYFASFGDALPPSGLYDR-----VLAEMEYPLILAALTATRGNQ 452 Query: 371 KNAAADLKISERTLYRKIKEYNLE 394 AA L ++ TL +KI+E + Sbjct: 453 IKAADLLGLNRNTLRKKIRELGVS 476
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 92.8 bits (230), Expect = 8e-25 Identities = 67/251 (26%), Positives = 109/251 (43%), Gaps = 18/251 (7%) Query: 3 KCALITGGTKGIGKAVALCLGKAGYNLVLTYASDPGMAEQTREGLQQQFGINVSVLEADI 62 K A ITG +GIG+AVA L G + + +P E+ L+ + + AD+ Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAH-IAAVDYNPEKLEKVVSSLKAE-ARHAEAFPADV 66 Query: 63 TKKESIDKIDAYLQEKNLLLDALIFNAGLTCRDSFEDLSLTDWERVFFANVHFPVFLLQR 122 +ID+I A ++ + +D L+ AG+ LS +WE F N VF R Sbjct: 67 RDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNS-TGVFNASR 125 Query: 123 IVG---RINKGGSVVFTGSLMGIQPHSVSLAYGVTKSAVHALVKNMVKFLVPYELRVNAV 179 V + GS+V GS P + AY +K+A K + L Y +R N V Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 180 APGFVDTEWQKTKPAE-------IRRNIEN---KVSLGRFCDPEELAEVYKMLIEN--SY 227 +PG +T+ Q + A+ I+ ++E + L + P ++A+ L+ + Sbjct: 186 SPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGH 245 Query: 228 FNGEVVVVDGG 238 + VDGG Sbjct: 246 ITMHNLCVDGG 256
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 30.6 bits (69), Expect = 0.002 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 5/53 (9%) Query: 12 GTFDMFHYNHLRMINYARSLADILIVGVSTDELVSSYKANPIIPFNERLQIIE 64 G+FD + HL +I L D + V V L + K P+ ERL+ I Sbjct: 7 GSFDPITFGHLDIIERGCRLFDQVYVAV----LRNPNK-QPMFSVQERLEQIA 54
>PF07132#Harpin protein (HrpN) Length = 356 Score = 25.4 bits (55), Expect = 0.034 Identities = 19/49 (38%), Positives = 25/49 (51%) Query: 21 MRGGGFGILINLLVGIIGGLLGGWVFGLLGIATAGIMGSLITSVIGAVL 69 M GGG G + L +GGL GG + G LG +GS + S +G L Sbjct: 64 MMGGGLGGGLGGLGSSLGGLGGGLLGGGLGGGLGSSLGSGLGSALGGGL 112
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 32.1 bits (72), Expect = 0.002 Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 1/77 (1%) Query: 188 PEELLEAPEIKKALTVLEESAFTDAELAGYEHFWD-GISVEKTLYNSAIRRGLVEGKAEG 246 P++L + EE+ +AE + + + + Y + I G +G +G Sbjct: 12 PDDLAPPQAEFVPIVEPEETIIEEAEPSLEQQLAQLQMQAHEQGYQAGIAEGRQQGHKQG 71 Query: 247 LAEGKAEGLAEGKAKEQ 263 EG A+GL +G A+ + Sbjct: 72 YQEGLAQGLEQGLAEAK 88
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 31.6 bits (72), Expect = 3e-04 Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 2/69 (2%) Query: 27 NTNQVSARLAEISTVSPADTFAVLKCLGGVLGDFMAQGRTVKLDGLGTFYLTAVATKQGV 86 N + A++AE + ++ D+ A + + + ++A+G V+L G G F + A ++G Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGR 62 Query: 87 D--SREKVK 93 + + E++K Sbjct: 63 NPQTGEEIK 71
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 44.2 bits (104), Expect = 2e-07 Identities = 28/190 (14%), Positives = 62/190 (32%), Gaps = 9/190 (4%) Query: 97 SPLAVVMEEQAA----PLQQAPLAGIAADSMQEHESASGAGEAKAKVSEGTPQPPAPVVA 152 P++V M A Q P + + EA + + P+P Sbjct: 48 QPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKP 107 Query: 153 EASVAQVAVYSAPCEDVAVADIVAEEEAPVAATALARSMPRHIPQPVIGEEAYREYLKKE 212 V Q P E + AP T+ + P + R + + Sbjct: 108 VKKVEQPKRDVKPVESRPASPFENT--APARPTSSTATAATSKPVTSV-ASGPRALSRNQ 164 Query: 213 LIHPQDSLCKGVSGTVVVEFHINEKGRPVDLKVKRSLCESADKEALRLIEKGPDWQ--VD 270 +P + + G V V+F + GR ++++ + + + ++ + ++ Sbjct: 165 PQYPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAKPANMFEREVKNAMRRWRYEPGKP 224 Query: 271 TAKVFVPVVF 280 + + V ++F Sbjct: 225 GSGIVVNILF 234
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 97.6 bits (243), Expect = 4e-23 Identities = 34/131 (25%), Positives = 70/131 (53%), Gaps = 2/131 (1%) Query: 1013 TLLVAEDETDLRNYLSGVLQAEFKEVYVAADGEEAWELLGQYQPDIIVSDVMMPRTDGYE 1072 T+LVA+D+ +R L+ L +V + ++ W + D++V+DV+MP + ++ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 1073 LCRRIKNDVTVSHIPVVLLTARADQASSLEGYKSGADIYLAKPFDVDSLLVILQNILKQR 1132 L RIK +PV++++A+ ++++ + GA YL KPFD+ L+ I+ L + Sbjct: 65 LLPRIKKA--RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122 Query: 1133 DQLRARYRESG 1143 + ++ + Sbjct: 123 KRRPSKLEDDS 133
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 51.8 bits (124), Expect = 9e-10 Identities = 24/121 (19%), Positives = 49/121 (40%), Gaps = 9/121 (7%) Query: 1 MNKIKAAIIEDEIPAARLLNKMLTELRPEWEIQVLPGNVEGAVKWYQDNPHPDILFLDIQ 60 M + +D+ +LN+ L+ + N +W D++ D+ Sbjct: 1 MTGATILVADDDAAIRTVLNQALS---RAGYDVRITSNAATLWRWIAAG-DGDLVVTDVV 56 Query: 61 LTDGVSFSFIEQ---ANPESMIVFTTAYD--EYAIRAFKANSIDYLLKPIDKERLGEALE 115 + D +F + + A P+ ++ +A + AI+A + + DYL KP D L + Sbjct: 57 MPDENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116 Query: 116 K 116 + Sbjct: 117 R 117
>PF06580#Sensor histidine kinase Length = 349 Score = 148 bits (376), Expect = 5e-44 Identities = 79/346 (22%), Positives = 153/346 (44%), Gaps = 17/346 (4%) Query: 3 NKYNHFFNFFLFSGLACFSHLFLVLYSDLSPQHQNVLISFWAFLLVVFVFNVIGFSIVLI 62 NKY + + F LY SP+ +++ + L+ + + Sbjct: 9 NKYYWYCQGIGWGVYTLTGFGFASLYG--SPKLHSMIFNIAISLMGL------VLTHAYR 60 Query: 63 SEWQRKSYQVLMKRNNQLLI--NCLLMAGLLFLINYLLSSVVKVLLEIPSPFVLKGAGFR 120 S +R+ + L L + C+++ + F+ N + ++ + P F L A Sbjct: 61 SFIKRQGWLKLNMGQIILRVLPACVVIGMVWFVANTSIWRLLAFINTKPVAFTLPLAL-S 119 Query: 121 MMFVVWLVEMVIVCLTMVANFYRQLIVLHEKANKLEESAIKSQYIALQNQLNPHFLFNNL 180 ++F V +V + L +F++ K+ A ++Q +AL+ Q+NPHF+FN L Sbjct: 120 IIFNVVVVTFMWSLLYFGWHFFKNYKQAEIDQWKMASMAQEAQLMALKAQINPHFMFNAL 179 Query: 181 NTLISEIEYNPKNAVVFTQRLSDVYRYILQSQQEGQVTLRSELTFLKSFIFLHQVRLGDC 240 N + + I +P A LS++ RY L+ QV+L ELT + S++ L ++ D Sbjct: 180 NNIRALILEDPTKAREMLTSLSELMRYSLRYSNARQVSLADELTVVDSYLQLASIQFEDR 239 Query: 241 IHVDNRIDPSLLEKKIPSFTLQLLTENVIKHNTINSDNPMTIYLSTSDDKKKLVVS---- 296 + +N+I+P++++ ++P +Q L EN IKH I L + D + + Sbjct: 240 LQFENQINPAIMDVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENT 299 Query: 297 NEIRLKQNVVKSGTGLKNLSTRCKLV--SDQDISIENDSKCFTVKI 340 + LK +GTGL+N+ R +++ ++ I + + Sbjct: 300 GSLALKNTKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMV 345
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 28.5 bits (64), Expect = 6e-04 Identities = 10/35 (28%), Positives = 20/35 (57%) Query: 2 NKREVIATVAERSGVNPEDCARVLDSFEDVFTEEI 36 NK+++IA VAE + + +D A +D+ + + Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYL 37
>PF06580#Sensor histidine kinase Length = 349 Score = 126 bits (319), Expect = 1e-35 Identities = 53/313 (16%), Positives = 128/313 (40%), Gaps = 13/313 (4%) Query: 51 QLGNQVYLAGVCTLISYFIVGYLHLYLLVPRLLL-KKKYLVYILCSSVSVLLLILLRYVQ 109 +L + ++ + + Y L L + ++ +L + V + ++ + Sbjct: 38 KLHSMIFNIAISLMGLVLTHAYRSFIKRQGWLKLNMGQIILRVLPACVVIGMVWFVANTS 97 Query: 110 EYWIFTSSGIPPVRGSYFNMVSILDSLSDYMLNMICITGISMTV-LLKHWMTENQRVNQL 168 + + PV F + L + + ++ + + K++ ++ Sbjct: 98 IWRLLAFINTKPVA---FTLPLALSIIFNVVVVTFMWSLLYFGWHFFKNYKQAEIDQWKM 154 Query: 169 ERKQIQSEVDNLKEQVNPSLLFNTLNRTGVLSKSEPQKAADMVLRLSQLLRYQLYDGARD 228 ++++ LK Q+NP +FN LN L +P KA +M+ LS+L+RY L Sbjct: 155 ASMAQEAQLMALKAQINPHFMFNALNNIRALILEDPTKAREMLTSLSELMRYSLRYSNAR 214 Query: 229 KVLLNSEINFLTHYLALEKF-YSDTFDYQIVSDKALTGVLIPPLLLVPIIQYALKRTVKQ 287 +V L E+ + YL L + D ++ + A+ V +PP+L+ +++ +K + Q Sbjct: 215 QVSLADELTVVDSYLQLASIQFEDRLQFENQINPAIMDVQVPPMLVQTLVENGIKHGIAQ 274 Query: 288 EKRP-SILLQADREGEEIHITCRFDDPTEPEMKE------LDSLKARLDLLYPENYSLSV 340 + ILL+ ++ + + + + L +++ RL +LY + + Sbjct: 275 LPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKESTGTGLQNVRERLQMLYGTEAQIKL 334 Query: 341 TREKTTGTSTITL 353 + ++ + + + Sbjct: 335 SEKQGKVNAMVLI 347
>PF06580#Sensor histidine kinase Length = 349 Score = 147 bits (373), Expect = 2e-43 Identities = 71/304 (23%), Positives = 132/304 (43%), Gaps = 8/304 (2%) Query: 56 IGYFLMIDMLIYVNAYVLVPRFLLKGRFLRYLLSSTTLVLLCIIILGTLQTLFEDTRFES 115 I LM +L + + + LK + +L ++ ++ T Sbjct: 46 IAISLMGLVLTHAYRSFIKRQGWLKLNMGQIILRVLPACVVIGMVWFVANTSIWRLLAFI 105 Query: 116 IPPSPSVMWLNIISSTVSCGLLVAASSALVIFKHWISNNQ--RIDELEAATL--QSELKF 171 + +S + ++ S L H+ N + ID+ + A++ +++L Sbjct: 106 NTKPVAFTLPLALSIIFNVVVVTFMWSLLYFGWHFFKNYKQAEIDQWKMASMAQEAQLMA 165 Query: 172 LKSQINPHFLFNMLNNVYVLIKKGRDEAAEVLFKLEDLLRYQLNDSSQEKIQLNSDIHFM 231 LK+QINPHF+FN LNN+ LI + +A E+L L +L+RY L S+ ++ L ++ + Sbjct: 166 LKAQINPHFMFNALNNIRALILEDPTKAREMLTSLSELMRYSLRYSNARQVSLADELTVV 225 Query: 232 NDFLNLEKIR-RDNFNYIISKEGDINKVWLPPLLFIPFVENAVKHN-TDSENASFVHLSF 289 + +L L I+ D + I V +PP+L VEN +KH + L Sbjct: 226 DSYLQLASIQFEDRLQFENQINPAIMDVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKG 285 Query: 290 IVQDNRLLFRCENSIPLPEEEVKEPRIGGLGLKNIKRRLELLYPGRHSLEIIEMKQSYTV 349 + + EN+ L + KE G GL+N++ RL++LY +++ E + Sbjct: 286 TKDNGTVTLEVENTGSLALKNTKE--STGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNA 343 Query: 350 NLQL 353 + + Sbjct: 344 MVLI 347
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 66.8 bits (163), Expect = 5e-15 Identities = 27/117 (23%), Positives = 46/117 (39%), Gaps = 7/117 (5%) Query: 4 IIVDDEPLAREAVEMLINETGQLTLAGSFNNAASAAKFIHEHPVDLIFLDIRMPKVTGLE 63 ++ DD+ R + ++ G +NAA+ ++I DL+ D+ MP + Sbjct: 7 LVADDDAAIRTVLNQALSRAGYDVRI--TSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 64 FARTIPK---STLVIFTTAYA--EYAIDSYEVDAVDYLVKPIIPERFQKAVEKVMAY 115 I K V+ +A AI + E A DYL KP + + +A Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 72.6 bits (178), Expect = 2e-15 Identities = 23/109 (21%), Positives = 47/109 (43%), Gaps = 2/109 (1%) Query: 776 KSTLLVAEDNESNYTYIKAIL--KEYNLVHAWNGQEAVDLYRKYHPDMILMDLKMPLMDG 833 +T+LVA+D+ + T + L Y++ N D+++ D+ MP + Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 834 YQATKEIRKDNTVIPIIAVTAFAFAEDEQRVKQSGFSDYVAKPIKPNDL 882 + I+K +P++ ++A + + G DY+ KP +L Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTEL 111
>MICOLLPTASE#Microbial collagenase metalloprotease (M9) signature. Length = 1104 Score = 29.7 bits (66), Expect = 0.012 Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 1/45 (2%) Query: 85 DKSGIYTVAYSIVNADGFVTTASRKVIVTDQNDPVEGVYYVDPAS 129 +K+G Y V ++ + +G + T S+K+ V + PVE + +P + Sbjct: 828 NKTGEYEVKLTVTDNNGGINTESKKIKVVEDK-PVEVINESEPNN 871
>PF06580#Sensor histidine kinase Length = 349 Score = 34.8 bits (80), Expect = 4e-04 Identities = 17/103 (16%), Positives = 39/103 (37%), Gaps = 18/103 (17%) Query: 227 MIEQVLI-NLLKNAVEACGDSIRPEVRVEAFRQDGIPVITVSDNGSGIVPEALDKVFVPF 285 M+ Q L+ N +K+ + ++ ++ + +G + V + GS + Sbjct: 258 MLVQTLVENGIKHGIAQLPQG--GKILLKGTKDNGTVTLEVENTGSLALKN--------- 306 Query: 286 FTTKPKGSGIGLS-VCRQIMNRHGGN--IMVASEIEKGTTFTL 325 + +G GL V ++ +G I ++ + K L Sbjct: 307 ---TKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVL 346
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 432 bits (1112), Expect = e-151 Identities = 160/490 (32%), Positives = 260/490 (53%), Gaps = 51/490 (10%) Query: 1 MKQGKILIIDDNEDVLFALNLLLEPYVEQIRVTTQPERIEHFMESYVPDVILLDMNFRRD 60 M IL+ DD+ + LN L +R+T+ + ++ + D+++ D+ Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVV---- 56 Query: 61 AISGQEGFFWLEKIKKADPDAVVLFITAYADTEKAVRAIKAGATDFIPKPWEKEKLLATL 120 + + F L +IKKA PD VL ++A A++A + GA D++PKP++ +L+ + Sbjct: 57 -MPDENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGII 115 Query: 121 SAALKLRESRTEVRSLKRQVAALESSDEEGFEIIGESNAMQEIFATIEKLRHTDANILIL 180 AL + R+ + LE ++G ++G S AMQEI+ + +L TD ++I Sbjct: 116 GRALAEPK---------RRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMIT 166 Query: 181 GENGTGKDLVARALYHHSPRNGQVFVGIDLGSIPESLFESELFGYEKGAFTDARRDKPGR 240 GE+GTGK+LVARAL+ + R FV I++ +IP L ESELFG+EKGAFT A+ GR Sbjct: 167 GESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGR 226 Query: 241 MEVATGGTLFLDEIGNLSMPMQAKLLTAIEKQQITRLGATRPVSIDVRLISATNMNIRAM 300 E A GGTLFLDEIG++ M Q +LL +++ + T +G P+ DVR+++ATN +++ Sbjct: 227 FEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQS 286 Query: 301 VEEGTFRQDLLYRINTIELHIPPLRERGNDIQLLADYFLIRYARKYKKEIKGLSREARSK 360 + +G FR+DL YR+N + L +PPLR+R DI L +F+ + ++ ++K +EA Sbjct: 287 INQGLFREDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKEG-LDVKRFDQEALEL 345 Query: 361 LQNYNWPGNVRELQHAIERAVILSDGLMLKPENF-------MLQPSVTKKKAELEELNLS 413 ++ + WPGNVREL++ + R L ++ E + + K A L++S Sbjct: 346 MKAHPWPGNVRELENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSIS 405 Query: 414 I-----------------------------LEKEAIERALRRADGNVTRAAELLGITRFA 444 +E I AL GN +AA+LLG+ R Sbjct: 406 QAVEENMRQYFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNT 465 Query: 445 LYRKLDKLGL 454 L +K+ +LG+ Sbjct: 466 LRKKIRELGV 475
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 52.5 bits (126), Expect = 2e-09 Identities = 37/225 (16%), Positives = 81/225 (36%), Gaps = 36/225 (16%) Query: 109 LIRTIDDQRDEWEKQLISFQEKEIEMEQKSLDLQKQTLQTTYELNRLKKSFALDEEE--- 165 L I +Q W+ Q +KE+ +++K + + +NR + +++ Sbjct: 187 LTSLIKEQFSTWQNQKY---QKELNLDKKRAERLTVLAR----INRYENLSRVEKSRLDD 239 Query: 166 ----FRMGVKSKAQL---EVQRDEFEYKTQSTALQLEGLRHDSAATILRRELMKNDLERE 218 +K + E + E + + QLE + + + +L+ + E Sbjct: 240 FSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNE 299 Query: 219 ---------------RKKYDRAQERMENLIVRAPLAGQLSFVKV-TPGQQVQSTEAIAEI 262 + + +ER + ++RAP++ ++ +KV T G V + E + I Sbjct: 300 ILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVI 359 Query: 263 KVLDQ-FKIHTSLSEYYIDRITTGLPATITWQGKKYPLRITKVVP 306 D ++ + I I G A I + +P + Sbjct: 360 VPEDDTLEVTALVQNKDIGFINVGQNAIIKVEA--FPYTRYGYLV 402
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 32.7 bits (74), Expect = 0.005 Identities = 14/27 (51%), Positives = 17/27 (62%) Query: 387 DGSTAGGSSGSGLFDSNGLVIGGLSGG 413 D ST GG+SGS +F+ VIG GG Sbjct: 229 DLSTTGGNSGSPVFNEKNEVIGIHWGG 255
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 32.1 bits (73), Expect = 0.004 Identities = 18/137 (13%), Positives = 52/137 (37%), Gaps = 21/137 (15%) Query: 4 LTKDYIDNLKSIIAEKDDAKAQALLHDLYPADIAELYQELNLGEAIYLYLLMDGDKAADV 63 L ++ + + ++ + PA+I Q+ + + +D KA+ + Sbjct: 96 LGTQKAVDIINNLGSALQSRPFEFVRRADPANILNFIQQEHPQTIALILSYLDPQKASFI 155 Query: 64 LMELDEEDRHKLLKELPN------------ELIAKRFVDNMETDD---------AVDLMR 102 L L E + + + + E + ++ + ++ ++D V+++ Sbjct: 156 LSSLPTEVQTNVARRIALMDRTSPEVVREVERVLEKKLASLSSEDYTSAGGVDNVVEIIN 215 Query: 103 ELDEDTQEEILSHIEDV 119 D T++ I+ +E+ Sbjct: 216 MADRKTEKFIIESLEEE 232
>CHANNELTSX#Nucleoside-specific channel-forming protein Tsx signature. Length = 294 Score = 29.2 bits (65), Expect = 0.019 Identities = 27/97 (27%), Positives = 38/97 (39%), Gaps = 13/97 (13%) Query: 206 NVWDGMKSIWLLKQKGRFVAQTLMIWGGYFCYFYITFYAFDFTRDLG-----ITVGLIAF 260 N WDG + K ++ +WGG Y I F FD+ DLG G A Sbjct: 180 NEWDGYRF------KVKYFVPLTDLWGGSLSY--IGFTNFDWGSDLGDDNFYDLNGKHAR 231 Query: 261 TMSSIGVAVPVQAGIGAWHFMVIATLVCFGVNENDAA 297 T +SI + + WH+ ++A G D A Sbjct: 232 TSNSIASSHILALNYAHWHYSIVARYFHNGGQWADDA 268
>PF07675#Cleaved Adhesin Length = 1358 Score = 45.1 bits (106), Expect = 2e-06 Identities = 40/178 (22%), Positives = 62/178 (34%), Gaps = 27/178 (15%) Query: 536 EATDMVDKVINYMDNKET-GSWKNNVCFVA--DDGSNAD--GYMIQHAQQADDLGEYINT 590 E T+++DKV+ Y S+ V +A D N+ I++ Q Y N Sbjct: 3 ELTNIIDKVLMYEKATMPDKSYLEKVLLIAGADYSWNSQVGQPTIKYGMQY-----YYNQ 57 Query: 591 SHPEFMVNKIYFDSYKKDFSGGLSTYPDVK-TNLQKQLKNGLLLINYTGHGNTVSWSDEK 649 H Y D Y Y T L G+ NYT HG+ +W+D Sbjct: 58 EHG-------YTDVYN---------YLKAPYTGCYSHLNTGVSFANYTAHGSETAWADPL 101 Query: 650 VLTESDITKSTYTRLPVWITATCDFCRFDAPVTSAGEQVFLNKVSGGIGLFTTTRVAY 707 + T + + + I C +FD GE + K G ++ +Y Sbjct: 102 LTTSQLKALTNKDKYFLAIGNCCITAQFDYVQPCFGEVITRVKEKGAYAYIGSSPNSY 159
>adhesinb#Adhesin B signature. Length = 310 Score = 29.4 bits (66), Expect = 0.016 Identities = 11/22 (50%), Positives = 14/22 (63%) Query: 1 MKKWMFLVCLSGMLLSLSSCSS 22 MKK FLV L + L++CSS Sbjct: 1 MKKCRFLVLLLLAFVGLAACSS 22
>PF03944#delta endotoxin Length = 633 Score = 30.0 bits (67), Expect = 0.012 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 11/45 (24%) Query: 5 SFLDYLR-YERNYSNYTIEAYSK----------DLRQFEEYVKLN 38 ++ DYL+ Y R+YSNY I Y D+ +F Y+ LN Sbjct: 207 TYRDYLKNYTRDYSNYCINTYQSAFKGLNTRLHDMLEFRTYMFLN 251
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 88.8 bits (220), Expect = 3e-21 Identities = 68/320 (21%), Positives = 121/320 (37%), Gaps = 69/320 (21%) Query: 13 VNIGTIGHVDHGKTTLTAAITTVLAKKGLSELRSFDS----IDNAPEEKERGITINTSHV 68 +NIG + HVD GKTTLT ++ + ++EL S D DN E++RGITI T Sbjct: 4 INIGVLAHVDAGKTTLTESL--LYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 69 EYQTANRHYAHVDCPGHADYVKNMVTGAAQMDGAIIVCAATDGPMPQTREHILLARQVNV 128 +Q N +D PGH D++ + + +DGAI++ +A DG QTR R++ + Sbjct: 62 SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGI 121 Query: 129 PRLVVFLNKCD-----------------------------------------------MV 141 P + F+NK D + Sbjct: 122 PT-IFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIE 180 Query: 142 DDEEMLE-------LVEMEMRELLSFYDFDGDNTPIIRGSALGALNGDAQWEDKVMELME 194 ++++LE L +E+ + S + P+ GSA + + L+E Sbjct: 181 GNDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIG--------IDNLIE 232 Query: 195 ACDTWIPLPPREVDKPFLMPVEDVFSITGRGTVATGRIETGIVKVGEEIQIIGLGAAGKK 254 V + R +A R+ +G++ + + ++I Sbjct: 233 VITNKFYSSTHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKIKIT 292 Query: 255 SVVTGVEMFRKLLDQGEAGD 274 + T + +D+ +G+ Sbjct: 293 EMYTSINGELCKIDKAYSGE 312
>SECETRNLCASE#Bacterial translocase SecE signature. Length = 127 Score = 28.7 bits (64), Expect = 0.001 Identities = 13/48 (27%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 2 KKIITYIKESYNELVYKVSWPTRTELSNSAVVVMFASLIIAAVIFVVD 49 K + + +E+ E V KV WPTR E ++ ++V + +++ +++ +D Sbjct: 66 KATVAFAREARTE-VRKVIWPTRQETLHTTLIVAAVTAVMSLILWGLD 112