>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 24.4 bits (53), Expect = 0.045 Identities = 9/53 (16%), Positives = 20/53 (37%), Gaps = 3/53 (5%) Query: 17 VPKTAGADIISVADLTEKFFADAKA---KGMSSTEIEEDTGSVYEAILDAIVH 66 + GA+ + A + A+ + +GM + T V +I + + Sbjct: 291 IKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKT 343
>BCTERIALGSPC#Bacterial general secretion pathway protein C signature. Length = 272 Score = 29.5 bits (66), Expect = 0.045 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 4/61 (6%) Query: 141 SGNIVGAVAGTLPAVVAAPELFG----AGEAGLGMRSVVSALTGGTINAADSGVRSGGDP 196 S I A A P + LFG +AG S +S L T+N + +GV +G D Sbjct: 47 SVQITPAQARQQPVTLNDFTLFGVSPEKNKAGALDASQMSNLPPSTLNLSLTGVMAGDDD 106 Query: 197 A 197 + Sbjct: 107 S 107
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 33.4 bits (76), Expect = 0.003 Identities = 23/129 (17%), Positives = 35/129 (27%), Gaps = 4/129 (3%) Query: 269 AQTPDQVPLPPAMPGQTQASAAPPVQTASLDPSIGIAPATKPAPDPGILAAAANAAPTDP 328 AQ + PA QA PP +P P I P Sbjct: 47 AQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPK 106 Query: 329 GILASPSLPASAPIPTPPPNAGYVPGAPGATSPAGQRVLSTMMQEDPLSGPGGVVQALSA 388 + P + + AP + + ++ P++ +ALS Sbjct: 107 PVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATS----KPVTSVASGPRALSR 162 Query: 389 ANPPAPAGA 397 P PA A Sbjct: 163 NQPQYPARA 171
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 41.6 bits (97), Expect = 6e-06 Identities = 28/189 (14%), Positives = 54/189 (28%), Gaps = 7/189 (3%) Query: 27 AETNPVAAEPVSTPNPISTDPKTVEAKPEPKADKAPTTREALKAAAAKVAEKAKADEGDE 86 E +E T + + TVE + + K + T + K ++ + Sbjct: 1083 NEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVS----PKQEQSET 1138 Query: 87 GKKPAPVQSQPKTGEKPADKAALPDPKPTKGA---ETTTTAKPADTTMRAEPKATSHHEA 143 + A + + + + ET++ + T S E Sbjct: 1139 VQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVEN 1198 Query: 144 PARFKSDAAAMAEWEKAPEPVKAAVHRSIRELEAGIEKHRVSAEAFEQVKDFDDLAKRNN 203 P ++ K RS+R + +E S+ V D + N Sbjct: 1199 PENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTN 1258 Query: 204 TSLRDAMTR 212 L DA + Sbjct: 1259 AVLSDARAK 1267 Score = 33.1 bits (75), Expect = 0.002 Identities = 27/165 (16%), Positives = 42/165 (25%), Gaps = 28/165 (16%) Query: 31 PVAAEPVSTPNPISTDPKTVEAKPE-----------PKADKAPTTREALKAAAAKVAEKA 79 V ++TPN I D +V + E P A P+ A +K K Sbjct: 991 TVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKT 1050 Query: 80 KADEGDEGKKPAPVQSQPKTGEKPADKAALPDPKPTKGAETTTTAKPADTTMRA------ 133 + + + K KA + + T + +T A Sbjct: 1051 VEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEE 1110 Query: 134 -----------EPKATSHHEAPARFKSDAAAMAEWEKAPEPVKAA 167 PK TS AE + +P Sbjct: 1111 KAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNI 1155 Score = 32.7 bits (74), Expect = 0.003 Identities = 23/163 (14%), Positives = 43/163 (26%), Gaps = 6/163 (3%) Query: 5 NNQQSLRRSNPMDDMNGGASAPAETNPVAAEPVSTPNPISTDPKTVEAKPEPKADKAPTT 64 Q + + + A E + S +P +TV+ + EP + PT Sbjct: 1094 ETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPT- 1152 Query: 65 REALKAAAAKVAEKAKADEGDEGKKPAPVQSQPKTGEKPADKAALPDPKPTKGAETTTTA 124 +K ++ AD K+ + QP T + T T Sbjct: 1153 -VNIKEPQSQ--TNTTADTEQPAKETSSNVEQPVTESTTVN--TGNSVVENPENTTPATT 1207 Query: 125 KPADTTMRAEPKATSHHEAPARFKSDAAAMAEWEKAPEPVKAA 167 +P + + H + + V Sbjct: 1208 QPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALC 1250
>cloacin#Cloacin signature. Length = 551 Score = 38.5 bits (89), Expect = 4e-05 Identities = 25/81 (30%), Positives = 32/81 (39%), Gaps = 1/81 (1%) Query: 111 GLANGGGGGAAGPHGNGAAGGSGGGSGGGGNGGGSTGAASSFPSGGAGGNNFGGTGGGAG 170 G G GA GN GG G GGG GS ++ + P GG G+ GG Sbjct: 4 GDGRGHNTGAHSTSGN-INGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 171 GAATALPGAAGTNGGGGGGGS 191 G + G +G GG + Sbjct: 63 GNGGGNGNSGGGSGTGGNLSA 83 Score = 37.4 bits (86), Expect = 1e-04 Identities = 32/90 (35%), Positives = 39/90 (43%), Gaps = 5/90 (5%) Query: 97 ASGIGDVKYSGGARGLANGGGGGAAGPHGNGAAGGSGGGS-----GGGGNGGGSTGAASS 151 + G G +G N GG G GA+ GSG S GGG G G S Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 152 FPSGGAGGNNFGGTGGGAGGAATALPGAAG 181 +GG GN+ GG+G G +A A P A G Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFG 91 Score = 36.2 bits (83), Expect = 2e-04 Identities = 33/95 (34%), Positives = 39/95 (41%), Gaps = 16/95 (16%) Query: 139 GGNGGGSTGAASSFPSGGAGGNNFGGTGGGAGGAATALPGAAGTNGGGGGGGSPDDSDTP 198 GG+G G A S +G N G TG G GG A+ G + N GGG Sbjct: 3 GGDGRGHNTGAHS----TSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSG----I 54 Query: 199 GVGGNGGNGTEWDATHGSGGGAGAGGDASTAGGSG 233 GG G HG+GGG G G S GG+ Sbjct: 55 HWGGGSG--------HGNGGGNGNSGGGSGTGGNL 81 Score = 34.7 bits (79), Expect = 6e-04 Identities = 34/100 (34%), Positives = 44/100 (44%), Gaps = 4/100 (4%) Query: 84 AAKAGGASLGGDAASGIGDVKYSGGARGLANG--GGGGAAGPH-GNGAAGGSGGGSGGGG 140 A G GG G+G G N GGG +G H G G+ G+GGG+G G Sbjct: 13 AHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSG 72 Query: 141 NGGGSTGAASSFPSGGAGGNNFGGTGGGAGGAATALPGAA 180 G G+ G S+ + A G T GAGG A ++ A Sbjct: 73 GGSGTGGNLSAVAAPVAFGFPALST-PGAGGLAVSISAGA 111 Score = 34.7 bits (79), Expect = 6e-04 Identities = 31/111 (27%), Positives = 45/111 (40%), Gaps = 10/111 (9%) Query: 165 TGGGAGGAATALPGAAGTNGGGGGGGSPDDSDTPGVGGNGGNGTEWDATHGS-GGGAGAG 223 +GG G T +G GG G GVGG +G+ W + + GGG+G+G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGL--------GVGGGASDGSGWSSENNPWGGGSGSG 53 Query: 224 -GDASTAGGSGGLYGGGAGRSNLSGGQGIIVITYTPGGAPDITGTLAATLA 273 +G G G +G + +GG V G P ++ A LA Sbjct: 54 IHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 33.9 bits (77), Expect = 0.003 Identities = 32/176 (18%), Positives = 64/176 (36%), Gaps = 8/176 (4%) Query: 619 KAAAAQAKPPPPDPAMLKAQAEIQALQAKSEAEAQSHAQEHAYKMQTLAAERDVKVQEAQ 678 A +A PPP PA E A +K E++ ++ A +T A R+V +EA+ Sbjct: 1017 IARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDA--TETTAQNREV-AKEAK 1073 Query: 679 IRVGNENARHARDMQVKDADMRSKLAEAGYPPDFSIDGANQMNQAQFQ---QIMAELTAT 735 V N + Q ++ E + ++ + Q ++ ++++ Sbjct: 1074 SNV-KANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPK 1132 Query: 736 REQSVQQGQQLGQTLVQALQLVVQSNQDTAKAMIAAATAPKRIVRDHAGRPIGAET 791 +EQS + Q + + V + A P + + +P+ T Sbjct: 1133 QEQS-ETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTEST 1187
>PF06580#Sensor histidine kinase Length = 349 Score = 32.5 bits (74), Expect = 0.003 Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 26/104 (25%) Query: 387 LLSNAIKF----TATGGEIRVRVGWTAGGGQYISVKDNGPGIPEDEIPVVLSAFGQGSIA 442 L+ N IK GG+I ++ G G + V++ G A Sbjct: 263 LVENGIKHGIAQLPQGGKILLK-GTKDNGTVTLEVENTGSL------------------A 303 Query: 443 IKSAEQGTGLGLPIV-QGLLAMHGGEFELH--SKLREGTEAIAI 483 +K+ ++ TG GL V + L ++G E ++ K + + I Sbjct: 304 LKNTKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLI 347
>ICENUCLEATIN#Ice nucleation protein signature. Length = 1258 Score = 35.1 bits (80), Expect = 0.006 Identities = 170/901 (18%), Positives = 272/901 (30%) Query: 808 ATGSTGATGSTGATGSTGATGSTGATGSTGATGATGATGSTGATGATGSTGATGSTGATG 867 A + S G+ + + + AT + +G S G Sbjct: 120 AGPGSPDVTSEVKVGNRSLPVTDDIDATIESGSTQPTQTIEIATYGSTLSGTHQSQLIAG 179 Query: 868 STGATGATGATGSTGATGATGSTGATGATGSTGATGSTGVTGATGSTGATGATGATGSTG 927 A ++ G+TG+ GA + + T ++ G + Sbjct: 180 YGSTETAGDSSTLIAGYGSTGTAGADSTLVAGYGSTQTAGEESSQMAGYGSTQTGMKGSD 239 Query: 928 ATGSTGNTGATGSTGATGATGATGDTGATGSTGATGSTGATGATGDTGATGSTGATGSTG 987 T G+TG G + A + T S+ G A + T G+TG+ G Sbjct: 240 LTAGYGSTGTAGDDSSLIAGYGSTQTAGEDSSLTAGYGSTQTAQKGSDLTAGYGSTGTAG 299 Query: 988 ATGATGDTGATGSTGATGATGATGDTGATGSTGATGSTGATGDTGATGSTGATGATGATG 1047 A + + T +T G + + T G TG G + A + Sbjct: 300 ADSSLIAGYGSTQTAGEESTQTAGYGSTQTAQKGSDLTAGYGSTGTAGDDSSLIAGYGST 359 Query: 1048 DTGATGSTGATGATGATGATGATGDTGATGSTGATGATGDTGATGSTGATGSTGATGDTG 1107 T S+ G A + T GSTG GA A + T +T G Sbjct: 360 QTAGEDSSLTAGYGSTQTAQKGSDLTAGYGSTGTAGADSSLIAGYGSTQTAGEESTQTAG 419 Query: 1108 TTGSTGATGATGATGDTGATGATGATGSTGATGATGATGDTGATGSTGATGATGATGDTG 1167 + A + T G+TG G S A + T ++ + G A + Sbjct: 420 YGSTQTAQKGSDLTAGYGSTGTAGDDSSLIAGYGSTQTAGEDSSLTAGYGSTQTAQKGSD 479 Query: 1168 ATGDTGVTGSTGATGATGATGATGDTGATGSTGATGATGSTGTTGATGATGDTGATGDTG 1227 T G T + G + A + T GST G + + G+T G Sbjct: 480 LTAGYGSTSTAGYESSLIAGYGSTQTAGYGSTLTAGYGSTQTAQNESDLITGYGSTSTAG 539 Query: 1228 ATGSTGATGATGATGDTGATGSTGATGSTGATGATGDTGATGSTGDTGATGATGATGATG 1287 A S A + T + + G + A + T GSTG G+ + A + Sbjct: 540 ANSSLIAGYGSTQTASYNSVLTAGYGSTQTAREGSDLTAGYGSTGTAGSDSSIIAGYGST 599 Query: 1288 ATGDTGATGSTGATGATGATGDTGATGSTGATGATGATGATGDTGATGATGATGATGATG 1347 T ++ + G A + T G+T GA + + T + G Sbjct: 600 QTASYHSSLTAGYGSTQTAREQSVLTTGYGSTSTAGADSSLIAGYGSTQTAGYNSILTAG 659 Query: 1348 DTGATGSTGATGSTGATGDTGATGSTGATGATGATGDTGATGSTGATGATGATGDTGATG 1407 + + T G T G+ + A + T S G + Sbjct: 660 YGSTQTAQEGSDLTAGYGSTSTAGADSSLIAGYGSTQTAGYNSILTAGYGSTQTAQEGSD 719 Query: 1408 STGATGATGATGDTGATGSTGATGSTGATGDTGATGSTGATGATGDTGATGSTGATGATG 1467 T G+T G + + + T + + G A + T G+T G Sbjct: 720 LTSGYGSTSTAGADSSLIAGYGSTQTASYHSSLTAGYGSTQTAREQSVLTTGYGSTSTAG 779 Query: 1468 ATGSTGATGDTGATGSTGATGATGATGDTGATGSTGATGATGATGDTGSTGATGATGATG 1527 A S A + T + G A + T G+T G+ + A + Sbjct: 780 ADSSLIAGYGSTQTAGYHSILTAGYGSTQTAQERSDLTTGYGSTSTAGADSSLIAGYGST 839 Query: 1528 DTGATGSTGATGATGATGATGATGDTGATGSTGATGATGATGDTGATGSTGATGATGDTG 1587 T S G A + T GST G + + T + G Sbjct: 840 QTAGYNSILTAGYGSTQTAQENSDLTTGYGSTSTAGYDSSLIAGYGSTQTAGYNSILTAG 899 Query: 1588 ATGSTGATGATGATGDTGATGSTGATGATGATGDTGATGSTGATGATGATGATGATGDTG 1647 + A + T G+T + G + A + T S +T G + A + Sbjct: 900 YGSTQTAQENSDLTTGYGSTSTAGYESSLIAGYGSTQTASFKSTLMAGYGSSQTAREQSS 959 Query: 1648 ATGSTGATGSTGATGDTGATGATGATGDTGATGATGATGATGATGDTGATGATGSTGATG 1707 T G+T G A + T +T G A + T GST G Sbjct: 960 LTAGYGSTSMAGYDSSLIAGYGSTQTAGYQSTLTAGYGSTQTAEHSSTLTAGYGSTATAG 1019 Query: 1708 A 1708 A Sbjct: 1020 A 1020 Score = 35.1 bits (80), Expect = 0.006 Identities = 168/877 (19%), Positives = 270/877 (30%) Query: 1450 ATGDTGATGSTGATGATGATGSTGATGDTGATGSTGATGATGATGDTGATGSTGATGATG 1509 + + AT + +G + G A + G+TG G Sbjct: 144 IDATIESGSTQPTQTIEIATYGSTLSGTHQSQLIAGYGSTETAGDSSTLIAGYGSTGTAG 203 Query: 1510 ATGDTGSTGATGATGATGDTGATGSTGATGATGATGATGATGDTGATGSTGATGATGATG 1569 A + + T + G + T G TG G + A + Sbjct: 204 ADSTLVAGYGSTQTAGEESSQMAGYGSTQTGMKGSDLTAGYGSTGTAGDDSSLIAGYGST 263 Query: 1570 DTGATGSTGATGATGDTGATGSTGATGATGATGDTGATGSTGATGATGATGDTGATGSTG 1629 T S+ G A + T G+TG GA S A + T +T + G Sbjct: 264 QTAGEDSSLTAGYGSTQTAQKGSDLTAGYGSTGTAGADSSLIAGYGSTQTAGEESTQTAG 323 Query: 1630 ATGATGATGATGATGDTGATGSTGATGSTGATGDTGATGATGATGDTGATGATGATGATG 1689 A + T G+TG+ G S A + T ++ G A + Sbjct: 324 YGSTQTAQKGSDLTAGYGSTGTAGDDSSLIAGYGSTQTAGEDSSLTAGYGSTQTAQKGSD 383 Query: 1690 ATGDTGATGATGSTGATGATGDTGATGSTGATGATGATGDTGATGSTGATGATGATGATG 1749 T G+TG G+ + A + T +T G A + T G+TG G Sbjct: 384 LTAGYGSTGTAGADSSLIAGYGSTQTAGEESTQTAGYGSTQTAQKGSDLTAGYGSTGTAG 443 Query: 1750 DTGATGSTGATGATGATGDTGATGSTGATGATGATGDTGATGSTGATGATGDTGATGSTG 1809 D + + + T + G A + T GST G A + Sbjct: 444 DDSSLIAGYGSTQTAGEDSSLTAGYGSTQTAQKGSDLTAGYGSTSTAGYESSLIAGYGST 503 Query: 1810 ATGATGATGATGATGDTGATGSTGATGSTGATGDTGATGSTGATGATGATGDTGATGSTG 1869 T G+T G A + G+T GA S A + T + + G Sbjct: 504 QTAGYGSTLTAGYGSTQTAQNESDLITGYGSTSTAGANSSLIAGYGSTQTASYNSVLTAG 563 Query: 1870 ATGATGATGDTGATGSTGATGATGATGDTGATGSTGATGATGATGDTGATGSTGATGATG 1929 A + T G+TG G+ A + T + ++ G + A + Sbjct: 564 YGSTQTAREGSDLTAGYGSTGTAGSDSSIIAGYGSTQTASYHSSLTAGYGSTQTAREQSV 623 Query: 1930 ATGDTGATGSTGATGATGATGDTGATGSTGATGATGATGDTGATGSTGATGATGATGDTG 1989 T G+T + GA + A + T + G A + T G+T G Sbjct: 624 LTTGYGSTSTAGADSSLIAGYGSTQTAGYNSILTAGYGSTQTAQEGSDLTAGYGSTSTAG 683 Query: 1990 ATGSTGATGATGSTGDTGATGSTGATGVTGATGDTGATGATGATGATGATGSTGATGATG 2049 A S A + T + + G A + T G+T GA S A + Sbjct: 684 ADSSLIAGYGSTQTAGYNSILTAGYGSTQTAQEGSDLTSGYGSTSTAGADSSLIAGYGST 743 Query: 2050 STGDTGATGATGDTGATGSTGATGSTGATGATGATGATGATGDTGATGSTGDTGATGSTG 2109 T ++ G + + T G+T GA + + T + + G Sbjct: 744 QTASYHSSLTAGYGSTQTAREQSVLTTGYGSTSTAGADSSLIAGYGSTQTAGYHSILTAG 803 Query: 2110 ATGATGATGATGATGATGATGATGATGDTGATGSTGATGATGATGDTGATGSTGATGATG 2169 A + T G+T GA A + T + G + A + Sbjct: 804 YGSTQTAQERSDLTTGYGSTSTAGADSSLIAGYGSTQTAGYNSILTAGYGSTQTAQENSD 863 Query: 2170 ATGDTGATGSTGATGSTGATGDTGATGSTGATGATGDTGATGSTGATGATGSTGATGATG 2229 T G+T + G S A + T + G + + T G+T G Sbjct: 864 LTTGYGSTSTAGYDSSLIAGYGSTQTAGYNSILTAGYGSTQTAQENSDLTTGYGSTSTAG 923 Query: 2230 DTGATGSTGATGDTGATGSTGATGATGDTGATGSTGATGATGATGATGATGDTGATGSTG 2289 + + + T + ST G A + T G+T G A + Sbjct: 924 YESSLIAGYGSTQTASFKSTLMAGYGSSQTAREQSSLTAGYGSTSMAGYDSSLIAGYGST 983 Query: 2290 ATGSTGATGDTGATGSTGATGATGATGDTGATGSTGA 2326 T +T G + A ++ T G+T + GA Sbjct: 984 QTAGYQSTLTAGYGSTQTAEHSSTLTAGYGSTATAGA 1020 Score = 34.7 bits (79), Expect = 0.008 Identities = 167/910 (18%), Positives = 275/910 (30%) Query: 1105 DTGTTGSTGATGATGATGDTGATGATGATGSTGATGATGATGDTGATGSTGATGATGATG 1164 D A + G + + AT + +G Sbjct: 111 DYVACTEMQAGPGSPDVTSEVKVGNRSLPVTDDIDATIESGSTQPTQTIEIATYGSTLSG 170 Query: 1165 DTGATGDTGVTGSTGATGATGATGATGDTGATGSTGATGATGSTGTTGATGATGDTGATG 1224 + G + A ++ G TG G+ A + T ++ G Sbjct: 171 THQSQLIAGYGSTETAGDSSTLIAGYGSTGTAGADSTLVAGYGSTQTAGEESSQMAGYGS 230 Query: 1225 DTGATGSTGATGATGATGDTGATGSTGATGSTGATGATGDTGATGSTGDTGATGATGATG 1284 + T G+TG G S A + T + G A + T Sbjct: 231 TQTGMKGSDLTAGYGSTGTAGDDSSLIAGYGSTQTAGEDSSLTAGYGSTQTAQKGSDLTA 290 Query: 1285 ATGATGDTGATGSTGATGATGATGDTGATGSTGATGATGATGATGDTGATGATGATGATG 1344 G+TG GA S A + T +T + G A + T G+TG G Sbjct: 291 GYGSTGTAGADSSLIAGYGSTQTAGEESTQTAGYGSTQTAQKGSDLTAGYGSTGTAGDDS 350 Query: 1345 ATGDTGATGSTGATGSTGATGDTGATGSTGATGATGATGDTGATGSTGATGATGATGDTG 1404 + + T S+ G + + T G TG G+ + A + T Sbjct: 351 SLIAGYGSTQTAGEDSSLTAGYGSTQTAQKGSDLTAGYGSTGTAGADSSLIAGYGSTQTA 410 Query: 1405 ATGSTGATGATGATGDTGATGSTGATGSTGATGDTGATGSTGATGATGDTGATGSTGATG 1464 ST G + T GSTG GD + + + T ++ + G Sbjct: 411 GEESTQTAGYGSTQTAQKGSDLTAGYGSTGTAGDDSSLIAGYGSTQTAGEDSSLTAGYGS 470 Query: 1465 ATGATGSTGATGDTGATGSTGATGATGATGDTGATGSTGATGATGATGDTGSTGATGATG 1524 A + T G+T + G + A + T G+T G + + Sbjct: 471 TQTAQKGSDLTAGYGSTSTAGYESSLIAGYGSTQTAGYGSTLTAGYGSTQTAQNESDLIT 530 Query: 1525 ATGDTGATGSTGATGATGATGATGATGDTGATGSTGATGATGATGDTGATGSTGATGATG 1584 G T G+ + A + T + G A + T GSTG G+ Sbjct: 531 GYGSTSTAGANSSLIAGYGSTQTASYNSVLTAGYGSTQTAREGSDLTAGYGSTGTAGSDS 590 Query: 1585 DTGATGSTGATGATGATGDTGATGSTGATGATGATGDTGATGSTGATGATGATGATGATG 1644 A + T + ++ G + A + T G+T + GA + A + T Sbjct: 591 SIIAGYGSTQTASYHSSLTAGYGSTQTAREQSVLTTGYGSTSTAGADSSLIAGYGSTQTA 650 Query: 1645 DTGATGSTGATGSTGATGDTGATGATGATGDTGATGATGATGATGATGDTGATGATGSTG 1704 + + G + A + T G+T GA + A + T + G Sbjct: 651 GYNSILTAGYGSTQTAQEGSDLTAGYGSTSTAGADSSLIAGYGSTQTAGYNSILTAGYGS 710 Query: 1705 ATGATGDTGATGSTGATGATGATGDTGATGSTGATGATGATGATGDTGATGSTGATGATG 1764 A + T G+T GA A + T + ++ G + + T Sbjct: 711 TQTAQEGSDLTSGYGSTSTAGADSSLIAGYGSTQTASYHSSLTAGYGSTQTAREQSVLTT 770 Query: 1765 ATGDTGATGSTGATGATGATGDTGATGSTGATGATGDTGATGSTGATGATGATGATGATG 1824 G T G+ + A + T S G A + T G+T GA Sbjct: 771 GYGSTSTAGADSSLIAGYGSTQTAGYHSILTAGYGSTQTAQERSDLTTGYGSTSTAGADS 830 Query: 1825 DTGATGSTGATGSTGATGDTGATGSTGATGATGATGDTGATGSTGATGATGATGDTGATG 1884 A + T + G + A + T G+T + G + A + T Sbjct: 831 SLIAGYGSTQTAGYNSILTAGYGSTQTAQENSDLTTGYGSTSTAGYDSSLIAGYGSTQTA 890 Query: 1885 STGATGATGATGDTGATGSTGATGATGATGDTGATGSTGATGATGATGDTGATGSTGATG 1944 + G A ++ T G+T G S A + T +T G Sbjct: 891 GYNSILTAGYGSTQTAQENSDLTTGYGSTSTAGYESSLIAGYGSTQTASFKSTLMAGYGS 950 Query: 1945 ATGATGDTGATGSTGATGATGATGDTGATGSTGATGATGATGDTGATGSTGATGATGSTG 2004 + A + T G+T G A + T +T G + A ++ T Sbjct: 951 SQTAREQSSLTAGYGSTSMAGYDSSLIAGYGSTQTAGYQSTLTAGYGSTQTAEHSSTLTA 1010 Query: 2005 DTGATGSTGA 2014 G+T + GA Sbjct: 1011 GYGSTATAGA 1020 Score = 33.6 bits (76), Expect = 0.018 Identities = 170/879 (19%), Positives = 275/879 (31%) Query: 1427 TGATGSTGATGDTGATGSTGATGATGDTGATGSTGATGATGATGSTGATGDTGATGSTGA 1486 S +T + +G + G A S+ G+TG+ GA Sbjct: 145 DATIESGSTQPTQTIEIATYGSTLSGTHQSQLIAGYGSTETAGDSSTLIAGYGSTGTAGA 204 Query: 1487 TGATGATGDTGATGSTGATGATGATGDTGSTGATGATGATGDTGATGSTGATGATGATGA 1546 A + T ++ G + T G TG G + A + Sbjct: 205 DSTLVAGYGSTQTAGEESSQMAGYGSTQTGMKGSDLTAGYGSTGTAGDDSSLIAGYGSTQ 264 Query: 1547 TGATGDTGATGSTGATGATGATGDTGATGSTGATGATGDTGATGSTGATGATGATGDTGA 1606 T + G A + T GSTG GA A + T +T G Sbjct: 265 TAGEDSSLTAGYGSTQTAQKGSDLTAGYGSTGTAGADSSLIAGYGSTQTAGEESTQTAGY 324 Query: 1607 TGSTGATGATGATGDTGATGSTGATGATGATGATGATGDTGATGSTGATGSTGATGDTGA 1666 + A + T G+TG+ G + A + T ++ + G + A + Sbjct: 325 GSTQTAQKGSDLTAGYGSTGTAGDDSSLIAGYGSTQTAGEDSSLTAGYGSTQTAQKGSDL 384 Query: 1667 TGATGATGDTGATGATGATGATGATGDTGATGATGSTGATGATGDTGATGSTGATGATGA 1726 T G+TG GA + A + T +T G A + T G+TG G Sbjct: 385 TAGYGSTGTAGADSSLIAGYGSTQTAGEESTQTAGYGSTQTAQKGSDLTAGYGSTGTAGD 444 Query: 1727 TGDTGATGSTGATGATGATGATGDTGATGSTGATGATGATGDTGATGSTGATGATGATGD 1786 A + T ++ G + + T G T G + A + Sbjct: 445 DSSLIAGYGSTQTAGEDSSLTAGYGSTQTAQKGSDLTAGYGSTSTAGYESSLIAGYGSTQ 504 Query: 1787 TGATGSTGATGATGDTGATGSTGATGATGATGATGATGDTGATGSTGATGSTGATGDTGA 1846 T GST G A + G+T GA A + T S + G Sbjct: 505 TAGYGSTLTAGYGSTQTAQNESDLITGYGSTSTAGANSSLIAGYGSTQTASYNSVLTAGY 564 Query: 1847 TGSTGATGATGATGDTGATGSTGATGATGATGDTGATGSTGATGATGATGDTGATGSTGA 1906 + A + T G+TG+ G+ + A + T S ++ G A + Sbjct: 565 GSTQTAREGSDLTAGYGSTGTAGSDSSIIAGYGSTQTASYHSSLTAGYGSTQTAREQSVL 624 Query: 1907 TGATGATGDTGATGSTGATGATGATGDTGATGSTGATGATGATGDTGATGSTGATGATGA 1966 T G+T GA S A + T + + G A + T G+T GA Sbjct: 625 TTGYGSTSTAGADSSLIAGYGSTQTAGYNSILTAGYGSTQTAQEGSDLTAGYGSTSTAGA 684 Query: 1967 TGDTGATGSTGATGATGATGDTGATGSTGATGATGSTGDTGATGSTGATGVTGATGDTGA 2026 A + T + G + A + T G+T + GA A + Sbjct: 685 DSSLIAGYGSTQTAGYNSILTAGYGSTQTAQEGSDLTSGYGSTSTAGADSSLIAGYGSTQ 744 Query: 2027 TGATGATGATGATGSTGATGATGSTGDTGATGATGDTGATGSTGATGSTGATGATGATGA 2086 T + ++ G + A + T G+T G + + + T + G Sbjct: 745 TASYHSSLTAGYGSTQTAREQSVLTTGYGSTSTAGADSSLIAGYGSTQTAGYHSILTAGY 804 Query: 2087 TGATGDTGATGSTGDTGATGSTGATGATGATGATGATGATGATGATGATGDTGATGSTGA 2146 + T G+T + GA + A + T + G A ++ Sbjct: 805 GSTQTAQERSDLTTGYGSTSTAGADSSLIAGYGSTQTAGYNSILTAGYGSTQTAQENSDL 864 Query: 2147 TGATGATGDTGATGSTGATGATGATGDTGATGSTGATGSTGATGDTGATGSTGATGATGD 2206 T G+T G S A + T + + G + A ++ T G+T G Sbjct: 865 TTGYGSTSTAGYDSSLIAGYGSTQTAGYNSILTAGYGSTQTAQENSDLTTGYGSTSTAGY 924 Query: 2207 TGATGSTGATGATGSTGATGATGDTGATGSTGATGDTGATGSTGATGATGDTGATGSTGA 2266 + + + T S +T G + + + T GST G A + Sbjct: 925 ESSLIAGYGSTQTASFKSTLMAGYGSSQTAREQSSLTAGYGSTSMAGYDSSLIAGYGSTQ 984 Query: 2267 TGATGATGATGATGDTGATGSTGATGSTGATGDTGATGS 2305 T +T G A S+ T G+T GA S Sbjct: 985 TAGYQSTLTAGYGSTQTAEHSSTLTAGYGSTATAGADSS 1023 Score = 33.2 bits (75), Expect = 0.020 Identities = 167/909 (18%), Positives = 280/909 (30%) Query: 1801 DTGATGSTGATGATGATGATGATGDTGATGSTGATGSTGATGDTGATGSTGATGATGATG 1860 D A A + + G+ + + + AT + +G Sbjct: 111 DYVACTEMQAGPGSPDVTSEVKVGNRSLPVTDDIDATIESGSTQPTQTIEIATYGSTLSG 170 Query: 1861 DTGATGSTGATGATGATGDTGATGSTGATGATGATGDTGATGSTGATGATGATGDTGATG 1920 + G A + G+TG GA A + T ++ G Sbjct: 171 THQSQLIAGYGSTETAGDSSTLIAGYGSTGTAGADSTLVAGYGSTQTAGEESSQMAGYGS 230 Query: 1921 STGATGATGATGDTGATGSTGATGATGATGDTGATGSTGATGATGATGDTGATGSTGATG 1980 + + T G+TG+ G + A + T ++ G A + T Sbjct: 231 TQTGMKGSDLTAGYGSTGTAGDDSSLIAGYGSTQTAGEDSSLTAGYGSTQTAQKGSDLTA 290 Query: 1981 ATGATGDTGATGSTGATGATGSTGDTGATGSTGATGVTGATGDTGATGATGATGATGATG 2040 G+TG GA S A + T +T + G A + T G+TG G Sbjct: 291 GYGSTGTAGADSSLIAGYGSTQTAGEESTQTAGYGSTQTAQKGSDLTAGYGSTGTAGDDS 350 Query: 2041 STGATGATGSTGDTGATGATGDTGATGSTGATGSTGATGATGATGATGATGDTGATGSTG 2100 S A + T ++ G + + T G+TG GA + + T Sbjct: 351 SLIAGYGSTQTAGEDSSLTAGYGSTQTAQKGSDLTAGYGSTGTAGADSSLIAGYGSTQTA 410 Query: 2101 DTGATGSTGATGATGATGATGATGATGATGATGATGDTGATGSTGATGATGATGDTGATG 2160 +T + G A + T G+TG G A + T ++ G Sbjct: 411 GEESTQTAGYGSTQTAQKGSDLTAGYGSTGTAGDDSSLIAGYGSTQTAGEDSSLTAGYGS 470 Query: 2161 STGATGATGATGDTGATGSTGATGSTGATGDTGATGSTGATGATGDTGATGSTGATGATG 2220 + A + T G+T + G S A + T G+T G + + Sbjct: 471 TQTAQKGSDLTAGYGSTSTAGYESSLIAGYGSTQTAGYGSTLTAGYGSTQTAQNESDLIT 530 Query: 2221 STGATGATGDTGATGSTGATGDTGATGSTGATGATGDTGATGSTGATGATGATGATGATG 2280 G+T G + + + T + S G A + T G+TG G+ Sbjct: 531 GYGSTSTAGANSSLIAGYGSTQTASYNSVLTAGYGSTQTAREGSDLTAGYGSTGTAGSDS 590 Query: 2281 DTGATGSTGATGSTGATGDTGATGSTGATGATGATGDTGATGSTGATGATGATGDTGATG 2340 A + T S ++ G + A + T G+T + GA + A + T Sbjct: 591 SIIAGYGSTQTASYHSSLTAGYGSTQTAREQSVLTTGYGSTSTAGADSSLIAGYGSTQTA 650 Query: 2341 STGATGSTGATGDTGATGSTGATGSTGDTGATGSTGATGATGATGVTGDRGATGSTGATG 2400 + + G A + T G T G+ + A + T + + G Sbjct: 651 GYNSILTAGYGSTQTAQEGSDLTAGYGSTSTAGADSSLIAGYGSTQTAGYNSILTAGYGS 710 Query: 2401 STGATGATGATGASGATGDTGATGSTGATGATGDTGATGSTGATGDTGATGSTGATGDTG 2460 + A + T G+T GA S A + T + S+ G + + T Sbjct: 711 TQTAQEGSDLTSGYGSTSTAGADSSLIAGYGSTQTASYHSSLTAGYGSTQTAREQSVLTT 770 Query: 2461 ATGSTGATGATGSAGATGATGATGDTGATGSTGATGATGATGDTGATGATGDTGATGSTG 2520 GST GA S A + T + + G A + T G T G+ Sbjct: 771 GYGSTSTAGADSSLIAGYGSTQTAGYHSILTAGYGSTQTAQERSDLTTGYGSTSTAGADS 830 Query: 2521 ATGSTGATGDTGATGSTGATGSTGATGATGATGASGPTGDTGATGSTGATGATGDTGSTG 2580 + + + T S G A + + G T G + A + T Sbjct: 831 SLIAGYGSTQTAGYNSILTAGYGSTQTAQENSDLTTGYGSTSTAGYDSSLIAGYGSTQTA 890 Query: 2581 ATGSTGATGDTGATGSTGATGATGAPGATGATGDTGATGSTGDTGATGSTGATGATGDTG 2640 S G + + T G+T G + + + T S +T G Sbjct: 891 GYNSILTAGYGSTQTAQENSDLTTGYGSTSTAGYESSLIAGYGSTQTASFKSTLMAGYGS 950 Query: 2641 ATGSTGATGATGSAGATGSTGATGATGATGNTGATGSTGATGSTGATGATGSTGPKGDTG 2700 + + + T G+T G + A + T +T + G + T Sbjct: 951 SQTAREQSSLTAGYGSTSMAGYDSSLIAGYGSTQTAGYQSTLTAGYGSTQTAEHSSTLTA 1010 Query: 2701 STGSTGPKG 2709 GST G Sbjct: 1011 GYGSTATAG 1019 Score = 33.2 bits (75), Expect = 0.025 Identities = 166/909 (18%), Positives = 278/909 (30%) Query: 1603 DTGATGSTGATGATGATGDTGATGSTGATGATGATGATGATGDTGATGSTGATGSTGATG 1662 D A A + G+ + AT + +G Sbjct: 111 DYVACTEMQAGPGSPDVTSEVKVGNRSLPVTDDIDATIESGSTQPTQTIEIATYGSTLSG 170 Query: 1663 DTGATGATGATGDTGATGATGATGATGATGDTGATGATGSTGATGATGDTGATGSTGATG 1722 + G A ++ G+TG GA + + T ++ G Sbjct: 171 THQSQLIAGYGSTETAGDSSTLIAGYGSTGTAGADSTLVAGYGSTQTAGEESSQMAGYGS 230 Query: 1723 ATGATGDTGATGSTGATGATGATGATGDTGATGSTGATGATGATGDTGATGSTGATGATG 1782 + T G+TG G + + T ++ G + + T Sbjct: 231 TQTGMKGSDLTAGYGSTGTAGDDSSLIAGYGSTQTAGEDSSLTAGYGSTQTAQKGSDLTA 290 Query: 1783 ATGDTGATGSTGATGATGDTGATGSTGATGATGATGATGATGDTGATGSTGATGSTGATG 1842 G TG G+ + A + T +T G A + T G+TG+ G Sbjct: 291 GYGSTGTAGADSSLIAGYGSTQTAGEESTQTAGYGSTQTAQKGSDLTAGYGSTGTAGDDS 350 Query: 1843 DTGATGSTGATGATGATGDTGATGSTGATGATGATGDTGATGSTGATGATGATGDTGATG 1902 A + T ++ G + A + T G+TG+ GA + A + T Sbjct: 351 SLIAGYGSTQTAGEDSSLTAGYGSTQTAQKGSDLTAGYGSTGTAGADSSLIAGYGSTQTA 410 Query: 1903 STGATGATGATGDTGATGSTGATGATGATGDTGATGSTGATGATGATGDTGATGSTGATG 1962 +T G A + T G+TG G S A + T ++ + G Sbjct: 411 GEESTQTAGYGSTQTAQKGSDLTAGYGSTGTAGDDSSLIAGYGSTQTAGEDSSLTAGYGS 470 Query: 1963 ATGATGDTGATGSTGATGATGATGDTGATGSTGATGATGSTGDTGATGSTGATGVTGATG 2022 A + T G+T G A + T GST G + A + Sbjct: 471 TQTAQKGSDLTAGYGSTSTAGYESSLIAGYGSTQTAGYGSTLTAGYGSTQTAQNESDLIT 530 Query: 2023 DTGATGATGATGATGATGSTGATGATGSTGDTGATGATGDTGATGSTGATGSTGATGATG 2082 G+T GA + A + T + S G + T GSTG G+ Sbjct: 531 GYGSTSTAGANSSLIAGYGSTQTASYNSVLTAGYGSTQTAREGSDLTAGYGSTGTAGSDS 590 Query: 2083 ATGATGATGDTGATGSTGDTGATGSTGATGATGATGATGATGATGATGATGATGDTGATG 2142 + A + T + S+ G + A + T G+T GA + A + T Sbjct: 591 SIIAGYGSTQTASYHSSLTAGYGSTQTAREQSVLTTGYGSTSTAGADSSLIAGYGSTQTA 650 Query: 2143 STGATGATGATGDTGATGSTGATGATGATGDTGATGSTGATGSTGATGDTGATGSTGATG 2202 + G A + T G+T GA S A + T + + G Sbjct: 651 GYNSILTAGYGSTQTAQEGSDLTAGYGSTSTAGADSSLIAGYGSTQTAGYNSILTAGYGS 710 Query: 2203 ATGDTGATGSTGATGATGSTGATGATGDTGATGSTGATGDTGATGSTGATGATGDTGATG 2262 + T G+T + GA + + T + + G A + T Sbjct: 711 TQTAQEGSDLTSGYGSTSTAGADSSLIAGYGSTQTASYHSSLTAGYGSTQTAREQSVLTT 770 Query: 2263 STGATGATGATGATGATGDTGATGSTGATGSTGATGDTGATGSTGATGATGATGDTGATG 2322 G+T GA + A + T + + G A + T G+T GA Sbjct: 771 GYGSTSTAGADSSLIAGYGSTQTAGYHSILTAGYGSTQTAQERSDLTTGYGSTSTAGADS 830 Query: 2323 STGATGATGATGDTGATGSTGATGSTGATGDTGATGSTGATGSTGDTGATGSTGATGATG 2382 S A + T + + G + A ++ T G+T + G + + + T Sbjct: 831 SLIAGYGSTQTAGYNSILTAGYGSTQTAQENSDLTTGYGSTSTAGYDSSLIAGYGSTQTA 890 Query: 2383 ATGVTGDRGATGSTGATGSTGATGATGATGASGATGDTGATGSTGATGATGDTGATGSTG 2442 G + A ++ T G+T +G A + T + T G Sbjct: 891 GYNSILTAGYGSTQTAQENSDLTTGYGSTSTAGYESSLIAGYGSTQTASFKSTLMAGYGS 950 Query: 2443 ATGDTGATGSTGATGDTGATGSTGATGATGSAGATGATGATGDTGATGSTGATGATGATG 2502 + + T G T G + A + T +T G + A ++ T Sbjct: 951 SQTAREQSSLTAGYGSTSMAGYDSSLIAGYGSTQTAGYQSTLTAGYGSTQTAEHSSTLTA 1010 Query: 2503 DTGATGATG 2511 G+T G Sbjct: 1011 GYGSTATAG 1019
>PF04183#IucA / IucC family Length = 580 Score = 27.9 bits (62), Expect = 0.032 Identities = 12/54 (22%), Positives = 27/54 (50%), Gaps = 10/54 (18%) Query: 109 KLFWDTLAADIKRHEERHVEIAKNYG----------RELENALKATYPRTDCGT 152 + F+ LAA + + ++H ++++ + R + N +K T+P D G+ Sbjct: 504 RRFYQLLAAVLSDYMKKHPQMSERFALFSLFRPQIIRVVLNPVKLTWPDLDGGS 557
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 120 bits (303), Expect = 9e-32 Identities = 89/401 (22%), Positives = 166/401 (41%), Gaps = 26/401 (6%) Query: 38 LLAALDQTIIAPAMPTIARALGHAE-YLPWMVTGYLLTATAVAPLYGKISDVYGRRPTIY 96 + L++ ++ ++P IA W+ T ++LT + +YGK+SD G + + Sbjct: 24 FFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLL 83 Query: 97 AAILIFLVGSLVSAMAPNMF-VLVIGRAIQGAGGGGLFALAQTVIGDLVPPRERARYAAW 155 I+I GS++ + + F +L++ R IQGAG AL V+ +P R + Sbjct: 84 FGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGL 143 Query: 156 VSGTWAVASIAGPLLGGTFAEHLHWSLIFWINIPLGLLAMAIINKPLKKLPIAAKHHR-- 213 + A+ GP +GG A ++HWS + + IP+ + L KL + Sbjct: 144 IGSIVAMGEGVGPAIGGMIAHYIHWS--YLLLIPMITIITVPF---LMKLLKKEVRIKGH 198 Query: 214 IDGLGALLLVIATALLLLALNWGGSTYAWFSREIVGLVAGSAVFWALFAIRLMGATEPLI 273 D G +L+ + +L +Y+ + S + + +F + T+P + Sbjct: 199 FDIKGIILMSVGIVFFMLFTT----SYSI------SFLIVSVLSFLIFVKHIRKVTDPFV 248 Query: 274 SLEVLGNPIVLAGALSMFLLQAANIGASVYLPVYLQTVIGLSVSESGMAMLGLLLGTVAG 333 + N + G L ++ G +P ++ V LS +E G + + GT++ Sbjct: 249 DPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVI--IFPGTMSV 306 Query: 334 AATS---GRLIPRFVHYKRIAMIGITLAIVSIGLLSAIAGHASLLEVEILTTLIGLGSGT 390 G L+ R + IG+T VS S + S I+ ++G G Sbjct: 307 IIFGYIGGILVDRRGPLY-VLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLG-GLSF 364 Query: 391 TFPVATVSVQNAVDRTHLGVATGVLTFLRTLGGALGVALLG 431 T V + V +++ + G +L F L G+A++G Sbjct: 365 TKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVG 405
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 37.6 bits (87), Expect = 3e-04 Identities = 21/118 (17%), Positives = 32/118 (27%), Gaps = 17/118 (14%) Query: 1902 DTSEPRNLRPAPQAQAARPAEPPRRPPAPQPELRTPQPPLGGTALRGTLDLERPAEPRQR 1961 D P+ ++P P+ P P P P E +P + Sbjct: 59 DLEPPQAVQPPPEPVV-EPEPEPEPIPEPPKEAPVVIEK------------PKPKPKPKP 105 Query: 1962 PEAGART-PQGGWVRDLLTAASNDADLRPATPPSPPAEAPRAAPA---QRSPLHVVES 2015 P+ AS + PA P S A A + P P + + Sbjct: 106 KPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATSKPVTSVASGPRALSRN 163
>cloacin#Cloacin signature. Length = 551 Score = 35.1 bits (80), Expect = 0.006 Identities = 30/108 (27%), Positives = 36/108 (33%), Gaps = 3/108 (2%) Query: 1008 GGGGGNGGFSVAGTFTTGALGASVAVGGSGGSGQSAGEVTVTSAGNIQTHGDQSIGIMAQ 1067 G G G S +G G G V G S GSG S+ G G G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSS---ENNPWGGGSGSGIHWGGGSGH 62 Query: 1068 SVGGGGGNGGFAGAGAITLQGVSAAVGLGGSGAGGGSAKTVRVTSTGD 1115 GGG GN G L V+A V G A + V+ + Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110 Score = 33.5 bits (76), Expect = 0.019 Identities = 35/118 (29%), Positives = 41/118 (34%), Gaps = 8/118 (6%) Query: 227 GGDG-GDGGDAKGISGD--AGDGGLGGSGGNATVNFNSGSVETQGNYSAGIAAISQGGHG 283 GGDG G A SG+ G GLG GG + GS + N G + S G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGA-----SDGSGWSSENNPWGGGSGSGIHWG 57 Query: 284 GNGGGGGGLVFNPGGGSPAGAGGNANVFTGVGTTITTYGIYSHGIAAQSIGGGGGGSA 341 G G G G GG G + V V G A SI G +A Sbjct: 58 GGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAA 115 Score = 33.1 bits (75), Expect = 0.024 Identities = 31/98 (31%), Positives = 41/98 (41%), Gaps = 8/98 (8%) Query: 1130 SVGGGGGNGGSTVSLALAKDAGIGVALGGKGGAAGNGLDVTVISTGNISTGAGFISGGVR 1189 S G G G+ S + + G G G + G+G G S G+G GG Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGS-GSGIHWGGGS 60 Query: 1190 GTGAAGILAQSVGGGGGNGGFAGTLGGGKSIAVGVAFG 1227 G G G G G +GG +GT G ++A VAFG Sbjct: 61 GHGNGG-------GNGNSGGGSGTGGNLSAVAAPVAFG 91 Score = 33.1 bits (75), Expect = 0.026 Identities = 26/89 (29%), Positives = 37/89 (41%) Query: 443 IGGGGGNGGNSGGLVSLGGDGASTTNGGIVEVTNTSAGSISTDGKQSAGIFAQSVGGGGG 502 + GG G G N+G + G T G+ + +G S + G + GGG Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 503 NGGTSGGLFSAGGKGGAGGNGARVTVTNA 531 G GG ++GG G GGN + V A Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLSAVAAPVA 89 Score = 32.8 bits (74), Expect = 0.032 Identities = 30/113 (26%), Positives = 41/113 (36%), Gaps = 3/113 (2%) Query: 941 IGGGGGNGGFAVTLSVSGSYEGAGGAAAVSVGGSGATGGVGKDVFVTSYGNIATYGKQSD 1000 + GG G G S SG+ G V G S +G ++ +G + G Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSEN---NPWGGGSGSGIHWG 57 Query: 1001 GILAQSIGGGGGNGGFSVAGTFTTGALGASVAVGGSGGSGQSAGEVTVTSAGN 1053 G GGG GN G A+ A VA G S AG + V+ + Sbjct: 58 GGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110
>PF06580#Sensor histidine kinase Length = 349 Score = 46.0 bits (109), Expect = 8e-08 Identities = 29/178 (16%), Positives = 62/178 (34%), Gaps = 25/178 (14%) Query: 119 ARTALQRADTLVRDTIIRARKS----SRETEHADINACLEVIEKLTGWAGDANIRLEVAS 174 AR L L+R ++ + + E +++ L+ + + D ++ E Sbjct: 193 AREMLTSLSELMRYSLRYSNARQVSLADELTV--VDSYLQ-LASIQ--FEDR-LQFENQI 246 Query: 175 ATDLPMVRCDPLGLQNAVLNLVFNARDAMPNGGVISISVAEVVVGPAHQIEARVKDNGVG 234 + V+ P+ +Q V N + + +P GG I + + + V++ G Sbjct: 247 NPAIMDVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKD----NGTVTLEVENTGSL 302 Query: 235 MSPETVVRAFEPFFTTKGNGLGGVGLPMVKRFVEEHGGTIEVESSFGSGTTVILRLPA 292 T + G GL V + + E I++ G ++ +P Sbjct: 303 ALKNTK--------ESTGTGLQNVRERLQMLYGTEAQ--IKLSEKQG-KVNAMVLIPG 349
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 40.9 bits (96), Expect = 2e-06 Identities = 24/125 (19%), Positives = 37/125 (29%), Gaps = 40/125 (32%) Query: 1 MKIVVIGGTGLIGSKTVERLRKKGHDV------------------LAASPNGGVNTITG- 41 MK +V G G IG +RL + GH V L G Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 42 ----EGLAEALA--GAQVVIDLA----------NSPSFEDKAVLEFFETSGRNLLAAEKR 85 EG+ + A + V N ++ D + F N+L + Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFL-----NILEGCRH 115 Query: 86 AGVKH 90 ++H Sbjct: 116 NKIQH 120
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 82.8 bits (204), Expect = 7e-21 Identities = 72/247 (29%), Positives = 120/247 (48%), Gaps = 17/247 (6%) Query: 18 AASINRGLAIVTGGRRGIGRAICCELAQAGFDIAVIDIVDDENASETVNLVRRHGRNAAF 77 A I +A +TG +GIG A+ LA G IA +D + E + V+ ++ R+A Sbjct: 3 AKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVD-YNPEKLEKVVSSLKAEARHAEA 61 Query: 78 YRKDISETSDNTALIERIEADLGGATCLVNNAGVQVSVRGDLLD-VSEESFDRLVGINLR 136 + D+ +++ + RIE ++G LVN AGV +R L+ +S+E ++ +N Sbjct: 62 FPADVRDSAAIDEITARIEREMGPIDILVNVAGV---LRPGLIHSLSDEEWEATFSVNST 118 Query: 137 GTFFFTQAVARAMISRPHVRLERSVVTITSANAGLVSPEKGPYCISKAGLSMASQQFAIR 196 G F +++V++ M+ R S+VT+ S AG+ Y SKA M ++ + Sbjct: 119 GVFNASRSVSKYMMDRR----SGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLE 174 Query: 197 LADTGIRVHEIRPGLIQTDMTADVY--EKYSAQVEAGQLSAIR------RWGQPEDIARG 248 LA+ IR + + PG +TDM ++ E + QV G L + + +P DIA Sbjct: 175 LAEYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADA 234 Query: 249 VATLAVG 255 V L G Sbjct: 235 VLFLVSG 241
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 38.0 bits (88), Expect = 4e-05 Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 6/76 (7%) Query: 473 GERLQRLNPLEDRDIHEL--LAFTHYLLGDYEASLRSFRR---WDNNNYDRGFANLAACL 527 G + LN + + +L LAF Y G YE + + F+ D+ + F L AC Sbjct: 22 GGTIAMLNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRF-FLGLGACR 80 Query: 528 GQLGRAEEARSAWGRC 543 +G+ + A ++ Sbjct: 81 QAMGQYDLAIHSYSYG 96
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 338 bits (869), Expect = e-115 Identities = 100/427 (23%), Positives = 172/427 (40%), Gaps = 3/427 (0%) Query: 9 RTIRRYLLGGVAACIFLVGGAGSLAAVTELSGAVIAPGKLVVDSSVKKVQHPTGGVVGDI 68 RR L FLV A L+ + ++ A GKL K+++ +V +I Sbjct: 52 PVSRRPRLVAYFIMGFLVI-AFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEI 110 Query: 69 LAREGDAVKSGQVLIRLDETVTRANLAIVTKGLDEFEARLARLEAERDDRAGIAFPASLT 128 + +EG++V+ G VL++L A+ L + R + P Sbjct: 111 IVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKL 170 Query: 129 SRRDDPAVARA--MAGEQSLFEFRRQARAGQKAQLEERIAQLAEEASGLTEQRTAKSREI 186 + SL + + QK Q E + + E + + Sbjct: 171 PDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLS 230 Query: 187 ELIGTELESIRTLWLKKLVSIDRMTALERDAVRLDGEHGQLTASIAQSKGRIAETRLQII 246 + + L+ +L K+ ++ + E V E + + Q + I + + Sbjct: 231 RVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQ 290 Query: 247 QVDQDLRSEVATELRDVQGKISEFVERKVSAEDQLKRIDIRSPQDGVVHQLAVHTIGGVI 306 V Q ++E+ +LR I E++ + IR+P V QL VHT GGV+ Sbjct: 291 LVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVV 350 Query: 307 SPGEVIMLVVPVADDLTVEARIAPQDIDQLSLGQDVALKLSAFNQRVTPELSGVVSEISA 366 + E +M++VP D L V A + +DI +++GQ+ +K+ AF L G V I+ Sbjct: 351 TTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINL 410 Query: 367 DLSVDERSGASFYTVRVSLPRTELKKLKGLTLAPGMPVEAFFATGSRTMLSYLVKPLADQ 426 D D+R G F + K + L+ GM V A TG R+++SYL+ PL + Sbjct: 411 DAIEDQRLGLVFNVIISIEENCLSTGNKNIPLSSGMAVTAEIKTGMRSVISYLLSPLEES 470 Query: 427 IARAFRE 433 + + RE Sbjct: 471 VTESLRE 477
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 77.7 bits (191), Expect = 1e-16 Identities = 64/280 (22%), Positives = 103/280 (36%), Gaps = 63/280 (22%) Query: 384 GDDTITGSNSPDTITGGRGNDTLNGVGGNDTYIYARGDGNDTVTDGSGNGINDRLVFTDI 443 GDD I G++ D + G +GNDTL+G G+D +Y GDGND + +GN Sbjct: 745 GDDLIEGNDGNDRLYGDKGNDTLSGGNGDD-QLYG-GDGNDKLIGVAGNNY--------- 793 Query: 444 DPSMVSLVRIGSDVKVVIAESSPGAGDAGSIVLKDILGDFISQGVDKILFADGTVWTRPT 503 + G GD D+ ++ Sbjct: 794 --------------------LNGGDGD------------------DEFQVQGNSLAKNV- 814 Query: 504 IVGKLVDLLGTTGNDSINGTSATDIIRGAAGNDTLNGASGDDTYLYARGDGNDTVNEGFW 563 L G GND + G+ D++ G G+D L G G+D Y Y G G+ +++ Sbjct: 815 -------LFGGKGNDKLYGSEGADLLDGGEGDDLLKGGYGNDIYRYLSGYGHHIIDDDGG 867 Query: 564 DVNDRLVFTNINRSGVSLVRNGNDLTVVIAES-APGAGDGGSVLIKNTLDDNNSWG---- 618 D+L +I+ V+ R GNDL + E G + +N + + Sbjct: 868 K-EDKLSLADIDFRDVAFKREGNDLIMYKGEGNVLSIGHKNGITFRNWFEKESGDISNHE 926 Query: 619 VEKVVFADGTAWTRADIRVALLDQAGTTGNDTIIGFNVAD 658 +E++ G T ++ AL Q + G + Sbjct: 927 IEQIFDKSGRIITPDSLKKALEYQQRNNKASYVYGNDALA 966 Score = 75.0 bits (184), Expect = 1e-15 Identities = 74/285 (25%), Positives = 111/285 (38%), Gaps = 44/285 (15%) Query: 510 DLLGTTGNDSINGTSATDIIRGAAGNDTLNGASGDDTYLYARGDGNDTVNEGFWDVNDRL 569 +L+GTT D G+ TDI GA G+D + G G+D LY GNDT++ G + +D+L Sbjct: 721 ELIGTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDR-LYG-DKGNDTLSGG--NGDDQL 776 Query: 570 VFTNINRSGVSLVRNGNDLTVVIAESAPGAGDGGSVLIKNTLDDNNSWGVEKVVFADGTA 629 + GND + G + L DD E V + A Sbjct: 777 YGGD-----------GNDKLI--------GVAGNNYLNGGDGDD------EFQVQGNSLA 811 Query: 630 WTRADIRVALLDQAGTTGNDTIIGFNVADTLHGRAGNDTLNGAGGDDTYLYARGDGNDTV 689 G GND + G AD L G G+D L G G+D Y Y G G+ + Sbjct: 812 KNVLF---------GGKGNDKLYGSEGADLLDGGEGDDLLKGGYGNDIYRYLSGYGHHII 862 Query: 690 NEGFWDVNDRLVFTDINPSGVSLVRNGNDLTVVIAES-APGAGDGGSVLIKNTLDDNNSW 748 ++ D+L DI+ V+ R GNDL + E G + +N + + Sbjct: 863 DDDGGK-EDKLSLADIDFRDVAFKREGNDLIMYKGEGNVLSIGHKNGITFRNWFEKESGD 921 Query: 749 G----VEKVVFADGTTWTRADIRVALLNQADTAGNDTITGFNVAD 789 +E++ G T ++ AL Q + G + Sbjct: 922 ISNHEIEQIFDKSGRIITPDSLKKALEYQQRNNKASYVYGNDALA 966 Score = 71.2 bits (174), Expect = 2e-14 Identities = 73/287 (25%), Positives = 108/287 (37%), Gaps = 44/287 (15%) Query: 644 GTTGNDTIIGFNVADTLHGRAGNDTLNGAGGDDTYLYARGDGNDTVNEGFWDVNDRLVFT 703 GTT D G D HG G+D + G G+D LY GNDT++ G + +D+L Sbjct: 724 GTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDR-LYG-DKGNDTLSGG--NGDDQLYGG 779 Query: 704 DINPSGVSLVRNGNDLTVVIAESAPGAGDGGSVLIKNTLDDNNSWGVEKVVFADGTTWTR 763 D N + GN+ G GD + N+L N +G Sbjct: 780 DGNDKLIG--VAGNNYLN------GGDGDDEFQVQGNSLAKNVLFG-------------- 817 Query: 764 ADIRVALLNQADTAGNDTITGFNVADTLHGRAGNDTLNGAGGDDTYLYARGDGNDTVNEG 823 GND + G AD L G G+D L G G+D Y Y G G+ +++ Sbjct: 818 ------------GKGNDKLYGSEGADLLDGGEGDDLLKGGYGNDIYRYLSGYGHHIIDDD 865 Query: 824 FWDVNDRLVFTDINPSGVSLVRNGNDLTVVIAES-APGAGDGGSVLIKNTLDDNNSWG-- 880 D+L DI+ V+ R GNDL + E G + +N + + Sbjct: 866 GGK-EDKLSLADIDFRDVAFKREGNDLIMYKGEGNVLSIGHKNGITFRNWFEKESGDISN 924 Query: 881 --VEKVVFADGTTWTRADIRVALLDQAGTTGNDTITGFNVADRISGG 925 +E++ G T ++ AL Q + G + S G Sbjct: 925 HEIEQIFDKSGRIITPDSLKKALEYQQRNNKASYVYGNDALAYGSQG 971 Score = 68.8 bits (168), Expect = 8e-14 Identities = 68/258 (26%), Positives = 99/258 (38%), Gaps = 44/258 (17%) Query: 8 TDGDDVLVGSAASGIMHGGKGNDTLDGASGNDNYVYARGDGNDLITDGYNDVGDRLTFTD 67 T D GS + I HG G+D ++G GND +Y GND ++ G D D+L D Sbjct: 725 TTRADKFFGSKFTDIFHGADGDDLIEGNDGNDR-LYG-DKGNDTLSGGNGD--DQLYGGD 780 Query: 68 INSSTVSLVRSGNDVTIVIAESAPGAGDGGSVRLKDALDDDHNRGVDQVVFADGTIWTRA 127 GND I G G+ L DD + + + Sbjct: 781 -----------GNDKLI---------GVAGNNYLNGGDGDDEFQVQGNSLAKN------- 813 Query: 128 GIRVMLLDQTATVGNDTITGFNVADTISGKAGNDTIDGAGGNDNYVYARGDGNDTLTEGY 187 +L GND + G AD + G G+D + G GND Y Y G G+ + + Sbjct: 814 -----VLFGGK--GNDKLYGSEGADLLDGGEGDDLLKGGYGNDIYRYLSGYGHHIIDDDG 866 Query: 188 NDYGDRLTFTDIDSSAVSIVRNGNDVTVVIAES-APGAGDGGSVVLKDTLEDNAGRG--- 243 D+L+ DID V+ R GND+ + E G + ++ E +G Sbjct: 867 GK-EDKLSLADIDFRDVAFKREGNDLIMYKGEGNVLSIGHKNGITFRNWFEKESGDISNH 925 Query: 244 -IDQIVFADGTNWSRAQL 260 I+QI G + L Sbjct: 926 EIEQIFDKSGRIITPDSL 943 Score = 65.8 bits (160), Expect = 8e-13 Identities = 62/203 (30%), Positives = 84/203 (41%), Gaps = 27/203 (13%) Query: 265 LTGTTADETLVGFSRDDTFHYARGGGDDTIIDGVNNGYNDQLVFSDINPDDVTLVGIGND 324 L GTT + G D FH G D +I+G N ND+L + D +D G G+D Sbjct: 722 LIGTTRADKFFGSKFTDIFH---GADGDDLIEG--NDGNDRL-YGD-KGNDTLSGGNGDD 774 Query: 325 VKVVVAESTTGAGDGGSILLKDALANYY--GQGIDKIVFADGTAWTRDDFRAAILGLGAT 382 GDG L+ A NY G G D+ + L Sbjct: 775 QLY--------GGDGNDKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNV--------LFGG 818 Query: 383 AGDDTITGSNSPDTITGGRGNDTLNGVGGNDTYIYARGDGNDTVTDGSGNGINDRLVFTD 442 G+D + GS D + GG G+D L G GND Y Y G G+ + D G D+L D Sbjct: 819 KGNDKLYGSEGADLLDGGEGDDLLKGGYGNDIYRYLSGYGHHIIDDDGGK--EDKLSLAD 876 Query: 443 IDPSMVSLVRIGSDVKVVIAESS 465 ID V+ R G+D+ + E + Sbjct: 877 IDFRDVAFKREGNDLIMYKGEGN 899 Score = 60.4 bits (146), Expect = 3e-11 Identities = 62/244 (25%), Positives = 94/244 (38%), Gaps = 49/244 (20%) Query: 141 GNDTITGFNVADTISGKAGNDTIDGAGGNDNYVYARGDGNDTLTEGYNDYGDRLTFTDID 200 G+D I G + D + G GNDT+ G G+D GDGND L Sbjct: 745 GDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLY--GGDGNDKLIGV-------------- 788 Query: 201 SSAVSIVRNGNDVTVVIAESAPGAGDGGSVVLKDTLEDN---AGRGIDQIVFADGTNWSR 257 GN+ G GD V ++L N G+G D++ ++G + Sbjct: 789 --------AGNNYLN------GGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGAD--- 831 Query: 258 AQLRDILLTGTTADETLVGFSRDDTFHYARGGGDDTIIDGVNNGYNDQLVFSDINPDDVT 317 LL G D+ L G +D + Y G G I D + G D+L +DI+ DV Sbjct: 832 ------LLDGGEGDDLLKGGYGNDIYRYLSGYGHHIIDD--DGGKEDKLSLADIDFRDVA 883 Query: 318 LVGIGNDVKVVVAES---TTGAGDGGSI--LLKDALANYYGQGIDKIVFADGTAWTRDDF 372 GND+ + E + G +G + + + I++I G T D Sbjct: 884 FKREGNDLIMYKGEGNVLSIGHKNGITFRNWFEKESGDISNHEIEQIFDKSGRIITPDSL 943 Query: 373 RAAI 376 + A+ Sbjct: 944 KKAL 947 Score = 53.8 bits (129), Expect = 3e-09 Identities = 57/227 (25%), Positives = 86/227 (37%), Gaps = 46/227 (20%) Query: 776 TAGNDTITGFNVADTLHGRAGNDTLNGAGGDDTYLYARGDGNDTVNEGFWDVNDRLVFTD 835 T D G D HG G+D + G G+D LY GNDT++ G + +D+L D Sbjct: 725 TTRADKFFGSKFTDIFHGADGDDLIEGNDGNDR-LYG-DKGNDTLSGG--NGDDQLYGGD 780 Query: 836 INPSGVSLVRNGNDLTVVIAESAPGAGDGGSVLIKNTLDDNNSWGVEKVVFADGTTWTRA 895 GND + G + L DD + + Sbjct: 781 -----------GNDKLI--------GVAGNNYLNGGDGDD-------EFQVQGNSLAKNV 814 Query: 896 DIRVALLDQAGTTGNDTITGFNVADRISGGGGNDTLTGGAGSDTFIFHTNFGSDKITDFV 955 G GND + G AD + GG G+D L GG G+D + + + +G I D Sbjct: 815 --------LFGGKGNDKLYGSEGADLLDGGEGDDLLKGGYGNDIYRYLSGYGHHIIDD-- 864 Query: 956 VGAGSQDVIQFGNDVFADFASVLAAATQVGADTVITHDAGNTLTLKN 1002 G +D + + F D A + G D ++ GN L++ + Sbjct: 865 -DGGKEDKLSLADIDFRDV-----AFKREGNDLIMYKGEGNVLSIGH 905
>cloacin#Cloacin signature. Length = 551 Score = 36.6 bits (84), Expect = 8e-05 Identities = 19/42 (45%), Positives = 21/42 (50%) Query: 25 NGNGGGNGGGHGNGGGHGNGGGNAGSNGKGNSGASHGKSASA 66 N GGG+G G GGG G+G G N G SG SA A Sbjct: 44 NPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVA 85 Score = 36.2 bits (83), Expect = 1e-04 Identities = 18/37 (48%), Positives = 26/37 (70%) Query: 23 AGNGNGGGNGGGHGNGGGHGNGGGNAGSNGKGNSGAS 59 +G+G G G GHGNGGG+GN GG +G+ G ++ A+ Sbjct: 50 SGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAA 86 Score = 35.1 bits (80), Expect = 3e-04 Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 1/47 (2%) Query: 25 NGNGGGNGGGHGNGGGHGNGGGNAGSNGKGNSGASHGKSASAPGQVG 71 G G G+G G G GHGNGGGN S G G+ + + +AP G Sbjct: 46 WGGGSGSGIHWGGGSGHGNGGGNGNS-GGGSGTGGNLSAVAAPVAFG 91 Score = 32.0 bits (72), Expect = 0.002 Identities = 18/41 (43%), Positives = 22/41 (53%) Query: 19 SPALAGNGNGGGNGGGHGNGGGHGNGGGNAGSNGKGNSGAS 59 +P G+G+G GGG G+G G GNG GS GN A Sbjct: 44 NPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAV 84 Score = 28.1 bits (62), Expect = 0.036 Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 6/66 (9%) Query: 19 SPALAGNGNGGGNGGGHG-----NGGGHGNGGGNAGSNGKGNSGASHGKSASAPGQVGKV 73 P G G G +G G GGG G+G G +G GN G + G S G G + Sbjct: 23 GPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGN-GNSGGGSGTGGNL 81 Query: 74 DADATA 79 A A Sbjct: 82 SAVAAP 87
>VACJLIPOPROT#VacJ lipoprotein signature. Length = 251 Score = 27.9 bits (62), Expect = 0.047 Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 2/45 (4%) Query: 204 FFVQSVFGLLGGIGTHPEDVAHMKRTADRLFGDQF-RWSVLGAGA 247 FF+ ++ G+ G I ++RT FG + V G G Sbjct: 103 FFLNTILGMGGFIDVAGMANPKLQRTEPHRFGSTLGHYGV-GYGP 146
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 105 bits (262), Expect = 3e-29 Identities = 75/257 (29%), Positives = 117/257 (45%), Gaps = 14/257 (5%) Query: 15 GLKGQRVLVTAGAGGIGFAIADTLSRLGARIIVCDISDEALAAAPGKIDLVA----AVKA 70 G++G+ +T A GIG A+A TL+ GA I D + E L + A A A Sbjct: 5 GIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPA 64 Query: 71 DVSRDEDVDRLFETVKEKLGGLDALVNNAGIAGPTGGVDEIEPDDWRRCIDICLTGQFLC 130 DV +D + ++ ++G +D LVN AG+ P G + + ++W + TG F Sbjct: 65 DVRDSAAIDEITARIEREMGPIDILVNVAGVLRP-GLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 131 ARRAVPLIKAAGGGSIVSMSSAAGRHGYAFRTPYSAAKFGVIGFAQSLAKELGPHGIRVN 190 +R + GSIV++ S Y+++K + F + L EL + IR N Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCN 183 Query: 191 AILPGIIEGPRIEGVIAAR--AKQV--GISHEEMTGRYLQNISLRRMTSPYDVASMVAFL 246 + PG E + A A+QV G TG I L+++ P D+A V FL Sbjct: 184 IVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTG-----IPLKKLAKPSDIADAVLFL 238 Query: 247 LSDAGINISGQSLGVDG 263 +S +I+ +L VDG Sbjct: 239 VSGQAGHITMHNLCVDG 255
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 29.8 bits (67), Expect = 0.040 Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 9/108 (8%) Query: 14 EVAEVELYHPHSWWTKYVFSQDAKVIAVQYSATATAIGLVALVLSWLMRLQLGFPGTFDF 73 +VA VEL + + + A + ++ + A A+ + + L LQ FP Sbjct: 264 DVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKV 323 Query: 74 ITPEAYYQFI---------TMHGMIMVIYLLTALFLGGFGNYLIPLMV 112 + P F+ T+ IM+++L+ LFL LIP + Sbjct: 324 LYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIA 371
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 28.6 bits (63), Expect = 0.013 Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 8/75 (10%) Query: 47 LEPGHAQGGSVRQLPAICST--------ASSSPASSKSAWPRPDNKPNRQESDSRLAGTR 98 L PG A+ + + LP + + +P + + P PD P+ GTR Sbjct: 315 LTPGSAEAPNAQPLPEVSPAENPANNPAPNENPGTRPNPEPDPDLNPDANPDTDGQPGTR 374 Query: 99 RLMPSAPSRTSIRPR 113 P+ P R + R R Sbjct: 375 PDSPAVPDRPNGRHR 389
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 46.5 bits (110), Expect = 3e-08 Identities = 53/207 (25%), Positives = 80/207 (38%), Gaps = 27/207 (13%) Query: 20 ALAADATVELPVASSYNWTGGYIGAQIGGGWSKVDQPWGFTEASPNIFDQDNADGSGVVG 79 ALA ATV W Y GA GWS+ GF + +N G+G G Sbjct: 11 ALAGFATVAQAAPKDNTW---YTGA--KLGWSQYHDT-GFINNNGPT--HENQLGAGAFG 62 Query: 80 GLHAGYNWQSGSFVFGGEADINATGIDGDDGGSGGDINGFKARWVASVRARAGFAF-DRV 138 G Y G E + G G + +KA+ V + A+ G+ D + Sbjct: 63 G----YQVNPY---VGFEMGYDWLGRMPYKGSV--ENGAYKAQGV-QLTAKLGYPITDDL 112 Query: 139 LIYGTGGYAYLNGKADTRDVGRQESHSASFNGWTIGAGAEYALTDNITVRGEYRYADFGS 198 IY G +ADT+ ++H + G EYA+T I R EY++ Sbjct: 113 DIYTRLGGMVW--RADTKSNVYGKNHDTGVSP-VFAGGVEYAITPEIATRLEYQWT---- 165 Query: 199 KTVVFNNYVEDISPALHTVTIGVSYKF 225 + + + P +++GVSY+F Sbjct: 166 -NNIGDAHTIGTRPDNGMLSLGVSYRF 191
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 68.3 bits (167), Expect = 2e-14 Identities = 45/258 (17%), Positives = 80/258 (31%), Gaps = 51/258 (19%) Query: 121 DTAKLQVQIERAEASAKGAAANVEDATVTLAENESALVRAAALTKRGMATDQSLEAATAT 180 + ++ +++ A A + +S L ++L + ++ Sbjct: 201 QKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENK 260 Query: 181 RDRSKAALDSAKANLA-----IANADLKSQQT---------------------------- 207 + L K+ L I +A + Q Sbjct: 261 YVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAK 320 Query: 208 ---DLANSTIYAPIDGIVLTRSV-DPGQTVASSLQAPVLFIIAADLRNMELVAAVDEADI 263 S I AP+ V V G V A L +I + +E+ A V DI Sbjct: 321 NEERQQASVIRAPVSVKVQQLKVHTEGGVVT---TAETLMVIVPEDDTLEVTALVQNKDI 377 Query: 264 GAVKTGQHARFTVDAFPDR---PFDAEIRDISYASVT--TDGVVTYNAR------LEVDN 312 G + GQ+A V+AFP ++++I+ ++ G+V L N Sbjct: 378 GFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVIISIEENCLSTGN 437 Query: 313 NELLLRPGMTATVSVVTR 330 + L GM T + T Sbjct: 438 KNIPLSSGMAVTAEIKTG 455 Score = 59.1 bits (143), Expect = 1e-11 Identities = 23/143 (16%), Positives = 48/143 (33%), Gaps = 1/143 (0%) Query: 69 AAKADLTVKVSATGTLQPLTQV-DISSQLSGIIRSVSVKENQQVKKGDVLAALDTAKLQV 127 + + + +A G L + +I + I++ + VKE + V+KGDVL L + Sbjct: 75 SVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEA 134 Query: 128 QIERAEASAKGAAANVEDATVTLAENESALVRAAALTKRGMATDQSLEAATATRDRSKAA 187 + ++S A + E + L + S E K Sbjct: 135 DTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQ 194 Query: 188 LDSAKANLAIANADLKSQQTDLA 210 + + +L ++ + Sbjct: 195 FSTWQNQKYQKELNLDKKRAERL 217
>PilS_PF08805#PilS N terminal Length = 185 Score = 26.0 bits (57), Expect = 0.047 Identities = 7/49 (14%), Positives = 20/49 (40%), Gaps = 6/49 (12%) Query: 77 RGHQALGVLLSIKLALLVIGAALAIRFGPFASGDS------AAAIVTGM 119 +G + VLL + + +++ +A + ++ S ++ M Sbjct: 26 KGATLMEVLLVVGVIVVLAASAYKLYSMVQSNIQSSNEQNNVLTVIANM 74
>FLAGELLIN#Flagellin signature. Length = 507 Score = 35.8 bits (82), Expect = 0.001 Identities = 36/269 (13%), Positives = 66/269 (24%), Gaps = 5/269 (1%) Query: 352 TGIDAHNFGTGATSVTANGTVTGSFAEGIKVVGNAAVTVSVADTVTGATRGLSLVGGTGG 411 ID + G +V T + T +V V Sbjct: 160 QKIDVKSLGLDGFNVNGPKEATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTT 219 Query: 412 SGDISVTGTGGFAGGSGDAANILNNGSGTVTIDISGASSSTGGEGIVVRDVTTSTGISVT 471 + + A G + NN + + + + + I G + Sbjct: 220 APTVPDKVYVNAANGQLTTDDAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFD 279 Query: 472 TGAVTALTAGKDAIDVQSQSLTGNITEVANGNLQAGNAGMVAAILNAAGIGNIDVTANGS 531 VT K D ++ I A A + A + +V Sbjct: 280 YKGVTFTIDTKTGNDGN-GKVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYT-SV 337 Query: 532 LDARFGIDAENFGSGSTKVTTVGPVTVTTGNGIFALSTGGDVTVNAGDVTSTGNTAIIAR 591 ++ +F D + + V + I VT G T I + Sbjct: 338 VNGQFTFDDKTKNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDK 397 Query: 592 QTGAGAGA---IAITTSGTVEGAIAAIDA 617 + A + +A+ID+ Sbjct: 398 TASGVSTLINEDAAAAKKSTANPLASIDS 426
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 29.3 bits (66), Expect = 0.019 Identities = 5/41 (12%), Positives = 11/41 (26%) Query: 62 QMRPSRATLPWLVAYGVTLCALNLLFYAALARIPLGVAVAL 102 + LP + + A +P+ + L Sbjct: 272 LYKRGETPLPLVTFKYTDAQVQTVRKIAEEEGVPILQRIPL 312
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 57.9 bits (140), Expect = 8e-13 Identities = 24/116 (20%), Positives = 46/116 (39%), Gaps = 2/116 (1%) Query: 3 TTVFIVDDHPLLLRGLADLIARDSGYRVIGTALDGRSALTMIRQDLPDVAVIDLNMPGFS 62 T+ + DD + L ++R +GY V + + I D+ V D+ MP + Sbjct: 4 ATILVADDDAAIRTVLNQALSR-AGYDVR-ITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 63 GLDLAFELGKETPTTRCVMLTAGASQSQLYEVIKAGVAGIVLKEAAIGTLLRCIHR 118 DL + K P ++++A + + + G + K + L+ I R Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 62.7 bits (152), Expect = 2e-14 Identities = 36/210 (17%), Positives = 71/210 (33%), Gaps = 25/210 (11%) Query: 1 MRVSKEKASANRDALLKAASRLFRQRGIEGVGVAEIAKEAGLTHGALYAHFSSKDELAAA 60 R +K++A R +L A RLF Q+G+ + EIAK AG+T GA+Y HF K +L + Sbjct: 2 ARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61 Query: 61 AFSYGFARNMADTRAWAGDRNPSFQDYMGGLL------------SPFMRDKLETGCPMAA 108 + + + + +L + + + C Sbjct: 62 IWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVG 121 Query: 109 SASEIGRQDCGVSASFTDAFQEMAAMLEGSIETIIPAAEKR-----KLAIAAVAAEIGAM 163 + + + + E +E +++ I A + A + I + Sbjct: 122 EMAVVQQAQ-------RNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGL 174 Query: 164 AVSRAIAKTDVALADEVLQAVLETVAAAYR 193 + A L + + + + Y Sbjct: 175 MENWLFAPQSFDLK-KEARDYVAILLEMYL 203
>ENTSNTHTASED#Enterobactin synthetase component D signature. Length = 234 Score = 66.6 bits (162), Expect = 1e-15 Identities = 37/152 (24%), Positives = 58/152 (38%), Gaps = 13/152 (8%) Query: 38 LPEEARSIPARQPAMRRASGAARWVAHRLLADTGISDLAIPRAPSGAPLWPNGIVGSLAH 97 LP R + + + A R A L + G+ + PLWP+G+ GS++H Sbjct: 33 LPHHDR-LRSAGRKRKAEHLAGRIAAVHALREVGVRTVPGM-GDKRQPLWPDGLFGSISH 90 Query: 98 DDDMAVAAVAPVGGIVSLGIDVEP------AEPLPDDIFAIVATGADRTGAADPRLAGRI 151 A+A + +GID+E A L I + LA + Sbjct: 91 CATTALAVI----SRQRIGIDIEKIMSQHTATELAPSIIDSDERQILQASLLPFPLALTL 146 Query: 152 LFAAKEAVYKAAYPLDREVLGYEDIAVDLDAG 183 F+AKE+VYK A+ + G+ V Sbjct: 147 AFSAKESVYK-AFSDRVTLPGFNSAKVTSLTA 177
>PF07520#Virulence protein SrfB Length = 1041 Score = 29.6 bits (66), Expect = 0.024 Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 7/84 (8%) Query: 20 VRQGVRHVRDLDRLPLSPVERAAAQAAAAHHKVRAPKAYLDLIDWNDPADP------IRA 73 V G R + L+R +P+ R + K++ P + + +D + +RA Sbjct: 936 VYIGARQL-PLERWTTTPLYRLDFANDSIAGKIKLPVKVELVREDDDFDEAETSLEKLRA 994 Query: 74 QVIPSPDELEEAEGELGDPIADHD 97 + + ++ AE G I + D Sbjct: 995 ERVREVFRVDAAEDAEGTMIKNDD 1018
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 55.2 bits (133), Expect = 1e-10 Identities = 37/175 (21%), Positives = 65/175 (37%), Gaps = 27/175 (15%) Query: 15 VLVTGGSGFIASHCMLKLLDAGYRLRTTVRSLEREAEVRAMLREGGAE--PGDRLSFVAA 72 LVTG +GFI H +LL+AG+++ + +L +V L++ E F Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVV-GIDNLNDYYDVS--LKQARLELLAQPGFQFHKI 59 Query: 73 DLTADAGWAEAV---AGCAYVMH-----GASPTPSGSQTREEDWVRPAVDGVLRVLKAAR 124 DL AD + V + + + G L +L+ R Sbjct: 60 DL-ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHA----YADSNLTGFLNILEGCR 114 Query: 125 DAGIKRVVL--TSAIGAVAMGHAPQTRPFNETDWSDLSGAVAPYQRSKTLSERAA 177 I+ ++ +S++ + PF+ D D V+ Y +K +E A Sbjct: 115 HNKIQHLLYASSSSVYG-----LNRKMPFSTDDSVD--HPVSLYAATKKANELMA 162
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 28.4 bits (63), Expect = 0.030 Identities = 19/96 (19%), Positives = 37/96 (38%), Gaps = 8/96 (8%) Query: 218 LEELARAAAMSRTSFAFHFRQTAGVAPLTY---LTQWRMHLAERALREEDTPVAVLARSL 274 L E+A+AA ++R + +HF+ + + + + E + P++VL L Sbjct: 34 LGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELELEYQAKFPGDPLSVLREIL 93 Query: 275 GYTSESAFSNAFKRATGTAPKRYRTAGKAERSGDAE 310 + ES + +R K E G+ Sbjct: 94 IHVLESTVTEERRRLLMEIIFH-----KCEFVGEMA 124
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 76.6 bits (188), Expect = 6e-19 Identities = 52/191 (27%), Positives = 76/191 (39%), Gaps = 9/191 (4%) Query: 7 KVALITGANRGIGLETGRQLAKLGFTVL---LGVRDLAKGEAAAKGLEGHVEAIALDVAA 63 K+A ITGA +GIG R LA G + L K ++ K H EA DV Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 64 PDAATTAADEVQRRFGRLDVLINNAAIHYDTGSRAL-RPDWTVIREAFETNVFGAWRVAA 122 A ++R G +D+L+N A + +L +W F N G + + Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEAT---FSVNSTGVFNASR 125 Query: 123 AFAPLLKAGGHGRLVNVSSEGGSLASMGAGAPAYSTSKATLNALTCVLAAELRGSGVLVN 182 + + + G +V V S + A Y++SKA T L EL + N Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAA--YASSKAAAVMFTKCLGLELAEYNIRCN 183 Query: 183 AICPGWVATDM 193 + PG TDM Sbjct: 184 IVSPGSTETDM 194
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 81.6 bits (201), Expect = 1e-20 Identities = 61/256 (23%), Positives = 109/256 (42%), Gaps = 19/256 (7%) Query: 3 LSNQKILIVGGGSGMGLALARRCVEAGATVIIAGRSDDRLRQARETLG----NPAGLEVA 58 + + I G G+G A+AR GA + + ++L + +L + Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 59 VVDIAREDQVAA-LFAEVGGLDHIVSTAADIEGAYRLLPELDLKAAQRMVNSKLFGPLLL 117 V D A D++ A + E+G +D +V+ A + L+ L + + + G Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPG--LIHSLSDEEWEATFSVNSTGVFNA 123 Query: 118 AKHGAPRLAA--SGSMTLISGIAAYRPAARGSVVAAVNAALEGLVRALAVELAP--LRVN 173 ++ + + SGS+ + A P + A+ AA + L +ELA +R N Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCN 183 Query: 174 AVSPGWVDTEIWAQVAGDRKAE--MLAAMAER----LPVGRVGQPEDIADAIFFLIGN-- 225 VSPG +T++ + D ++ E +P+ ++ +P DIADA+ FL+ Sbjct: 184 IVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQA 243 Query: 226 GFTTGTTLHVEGGHRL 241 G T L V+GG L Sbjct: 244 GHITMHNLCVDGGATL 259
>56KDTSANTIGN#Rickettsia 56kDa type-specific antigen protein signature. Length = 533 Score = 30.7 bits (69), Expect = 0.006 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 3/53 (5%) Query: 170 KAAVPPHKLLVYKVTEGWA---PLCDFLGVALPNEPFPNLNDRETIKKIIRDI 219 K + P K+L K+ + ++ P D G+ +P+ PN E I+ I+++ Sbjct: 255 KPSASPVKVLSDKIIQIYSDIKPFADIAGINVPDTGLPNSASIEQIQSKIQEL 307
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 41.5 bits (97), Expect = 1e-06 Identities = 44/192 (22%), Positives = 67/192 (34%), Gaps = 38/192 (19%) Query: 2 KLALLCSVAFLAAASPVLAADIVEPVAAMPFSWTGFYGGVQAGGGW-NDSRWSGATFDSF 60 K A+ +VA A+ AA P +Y G + G +D+ + + Sbjct: 3 KTAIAIAVALAGFATVAQAA----PKD------NTWYTGAKLGWSQYHDTGFINNNGPTH 52 Query: 61 NTNGSGGIFGGQIGYNYQINQFVIGIE---GDLAGSTVKG--DGQCSTALGTTCETKQDY 115 G FGG YQ+N +V G E L KG + A G Sbjct: 53 ENQLGAGAFGG-----YQVNPYV-GFEMGYDWLGRMPYKGSVENGAYKAQGVQ------- 99 Query: 116 LGSVRGRLGYAI-DRILIYGDAGVAFTKY-KIAEVDGFHQSFGGGSRVGWTAGLGAEYAL 173 + +LGY I D + IY G + + V G + + V G EYA+ Sbjct: 100 ---LTAKLGYPITDDLDIYTRLGGMVWRADTKSNVYGKNHD----TGVSPVFAGGVEYAI 152 Query: 174 TDHWTAGVEWNY 185 T +E+ + Sbjct: 153 TPEIATRLEYQW 164
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 31.6 bits (71), Expect = 0.013 Identities = 32/224 (14%), Positives = 74/224 (33%), Gaps = 10/224 (4%) Query: 171 TAKSADKAAKLANAIAQAYLADQASARAKMATDASDSITARLEEQRKRV----QQAENAV 226 +AK A+ A A+ ++A A + A + LE ++ + + E A+ Sbjct: 140 SAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKAL 199 Query: 227 EAYKSAHNMVMAAGNLVSDQELTEINTQLSAAQSRTAALKAQVDQLRRSGGAPDATSEAM 286 E + A + E + + + + +A A+ Sbjct: 200 EGAMNFSTADSAKIKTLEA-EKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAAL 258 Query: 287 RSSVISSLRAQEATLVDQVSQLGTELGPRHPSMIAAQQQLRDTRALIARELGRIGAAAET 346 + + L ++ + ++ A + + D + Sbjct: 259 EAR-QAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANR-QSLRR 316 Query: 347 DYERALANQQALEAKVAGMKSKSLDTDQASVRLRELQRDLEAVR 390 D + + ++ LEA+ ++ + +AS + L+RDL+A R Sbjct: 317 DLDASREAKKQLEAEHQKLEEQ-NKISEAS--RQSLRRDLDASR 357
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 40.4 bits (94), Expect = 2e-06 Identities = 23/85 (27%), Positives = 37/85 (43%) Query: 1 MRYDKGRKDASRSRIMEVASHRFRGDGIAASGLASIMSDAGMTNGAFYPHFQSKADLVRE 60 R K +R I++VA F G++++ L I AG+T GA Y HF+ K+DL E Sbjct: 2 ARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61 Query: 61 SMASALETQSQQLQQALASGGLELA 85 + + + A + Sbjct: 62 IWELSESNIGELELEYQAKFPGDPL 86
>SECA#SecA protein signature. Length = 901 Score = 29.5 bits (66), Expect = 0.013 Identities = 13/55 (23%), Positives = 20/55 (36%) Query: 130 DSRNQSEKASAFSPENAQHFSAREEKGMGVSSPENAQHLPPAGRNTPTPGFSGKK 184 + Q + A Q S +++ ++ GRN P P SGKK Sbjct: 838 EELEQQRRMEAERLAQMQQLSHQDDDSAAAAALAAQTGERKVGRNDPCPCGSGKK 892
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 47.6 bits (113), Expect = 2e-08 Identities = 17/94 (18%), Positives = 31/94 (32%) Query: 89 GINPELSAAYYNNGIILVLKGDYDRAITYLDQAIFLDPDNAEFYYNRGVAWSYKGNDERA 148 I+ + Y+ G Y+ A LD ++ F+ G G + A Sbjct: 30 EISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLA 89 Query: 149 IADYDAAIKLNPGDARAYHNRGLNWARKGDKERA 182 I Y ++ + R + +KG+ A Sbjct: 90 IHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEA 123 Score = 41.5 bits (97), Expect = 2e-06 Identities = 21/93 (22%), Positives = 32/93 (34%) Query: 124 LDPDNAEFYYNRGVAWSYKGNDERAIADYDAAIKLNPGDARAYHNRGLNWARKGDKERAI 183 + D E Y+ G E A + A L+ D+R + G G + AI Sbjct: 31 ISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAI 90 Query: 184 ADYSQAISLDPKNASSYNNRGDAWDSKGDDDRA 216 YS +D K + + KG+ A Sbjct: 91 HSYSYGAIMDIKEPRFPFHAAECLLQKGELAEA 123 Score = 38.8 bits (90), Expect = 2e-05 Identities = 17/94 (18%), Positives = 35/94 (37%) Query: 157 KLNPGDARAYHNRGLNWARKGDKERAIADYSQAISLDPKNASSYNNRGDAWDSKGDDDRA 216 +++ ++ N + G E A + LD ++ + G + G D A Sbjct: 30 EISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLA 89 Query: 217 MADYNQVIILDTKNAHAYYRRGLIWSRKGDDSRA 250 + Y+ I+D K + +KG+ + A Sbjct: 90 IHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEA 123 Score = 38.0 bits (88), Expect = 3e-05 Identities = 23/116 (19%), Positives = 35/116 (30%), Gaps = 7/116 (6%) Query: 43 IAACTAIIEDKAEASDNRAAAYFNRAGALIRRGDNDDAFADYDKAIGINPELSAAYYNNG 102 IA I D E + A + G +DA + ++ S + G Sbjct: 25 IAMLNEISSDTLEQLYSLAFNQYQS-------GKYEDAHKVFQALCVLDHYDSRFFLGLG 77 Query: 103 IILVLKGDYDRAITYLDQAIFLDPDNAEFYYNRGVAWSYKGNDERAIADYDAAIKL 158 G YD AI +D F ++ KG A + A +L Sbjct: 78 ACRQAMGQYDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQEL 133 Score = 38.0 bits (88), Expect = 3e-05 Identities = 18/95 (18%), Positives = 33/95 (34%) Query: 200 YNNRGDAWDSKGDDDRAMADYNQVIILDTKNAHAYYRRGLIWSRKGDDSRAIADYSQVIS 259 + G + A + + +LD ++ + G G AI YS Sbjct: 39 LYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAI 98 Query: 260 LDPTDPSIRYNKGLAWLRKGDGDRAIADFDEAIRL 294 +D +P ++ L+KG+ A + A L Sbjct: 99 MDIKEPRFPFHAAECLLQKGELAEAESGLFLAQEL 133 Score = 36.1 bits (83), Expect = 1e-04 Identities = 17/109 (15%), Positives = 37/109 (33%) Query: 294 LDPKMAAAYYDRGTEWLRKGDRDRAITDYSEVITLEPTNAMALNDRGFVLNELGEYERAL 353 + Y + G + A + + L+ ++ G +G+Y+ A+ Sbjct: 31 ISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAI 90 Query: 354 ADLNRAIGLDPKQAKIYSNRAIARAAKGDFAPALADYNQAIALDPNFPN 402 + +D K+ + + A KG+ A A + A L + Sbjct: 91 HSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELIADKTE 139 Score = 35.7 bits (82), Expect = 2e-04 Identities = 17/85 (20%), Positives = 25/85 (29%) Query: 234 YYRRGLIWSRKGDDSRAIADYSQVISLDPTDPSIRYNKGLAWLRKGDGDRAIADFDEAIR 293 Y + G A + + LD D G G D AI + Sbjct: 39 LYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAI 98 Query: 294 LDPKMAAAYYDRGTEWLRKGDRDRA 318 +D K + L+KG+ A Sbjct: 99 MDIKEPRFPFHAAECLLQKGELAEA 123 Score = 31.8 bits (72), Expect = 0.003 Identities = 22/96 (22%), Positives = 32/96 (33%) Query: 339 RGFVLNELGEYERALADLNRAIGLDPKQAKIYSNRAIARAAKGDFAPALADYNQAIALDP 398 F + G+YE A LD ++ + R A G + A+ Y+ +D Sbjct: 42 LAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDI 101 Query: 399 NFPNAYAGRGFVNFYSGMLAKAEPDFAKAAALAPDN 434 P G LA+AE A L D Sbjct: 102 KEPRFPFHAAECLLQKGELAEAESGLFLAQELIADK 137 Score = 30.3 bits (68), Expect = 0.012 Identities = 20/111 (18%), Positives = 32/111 (28%) Query: 252 ADYSQVISLDPTDPSIRYNKGLAWLRKGDGDRAIADFDEAIRLDPKMAAAYYDRGTEWLR 311 + + + Y+ + G + A F LD + + G Sbjct: 23 GTIAMLNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQA 82 Query: 312 KGDRDRAITDYSEVITLEPTNAMALNDRGFVLNELGEYERALADLNRAIGL 362 G D AI YS ++ L + GE A + L A L Sbjct: 83 MGQYDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQEL 133
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 53.8 bits (129), Expect = 1e-10 Identities = 25/89 (28%), Positives = 34/89 (38%) Query: 151 DYVKAIADFDKAIRLDPENNGLYNLRGNAYLRKGDYDQAITSYSQAIFLDSQDPNQYFNL 210 Y A F LD ++ + G G YD AI SYS +D ++P F+ Sbjct: 51 KYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIKEPRFPFHA 110 Query: 211 GLAWTTKGNLERAIADYSQAISLDANHAE 239 KG L A + A L A+ E Sbjct: 111 AECLLQKGELAEAESGLFLAQELIADKTE 139 Score = 48.4 bits (115), Expect = 1e-08 Identities = 28/112 (25%), Positives = 42/112 (37%), Gaps = 3/112 (2%) Query: 156 IADFDKAIRLDPENNGLYNLRGNAYLRKGDYDQAITSYSQAIFLDSQDPNQYFNLGLAWT 215 IA ++ E LY+L N Y G Y+ A + LD D + LG Sbjct: 25 IAMLNEISSDTLEQ--LYSLAFNQYQ-SGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQ 81 Query: 216 TKGNLERAIADYSQAISLDANHAEAYRWRADAWVKRGDTDQALSDYTEAIRL 267 G + AI YS +D A+ +++G+ +A S A L Sbjct: 82 AMGQYDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQEL 133 Score = 39.5 bits (92), Expect = 1e-05 Identities = 19/92 (20%), Positives = 34/92 (36%) Query: 345 NLGLAWWDKGDLDRAISAFDQAVIVDPKYAPAYNDRGLARMDKNQYDLAIADYNMAILID 404 +L + G + A F ++D + + G R QYDLAI Y+ ++D Sbjct: 41 SLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMD 100 Query: 405 AGFVSAYRNRGNAWNRKGQFDYAIADFDQAID 436 + +KG+ A + A + Sbjct: 101 IKEPRFPFHAAECLLQKGELAEAESGLFLAQE 132 Score = 35.3 bits (81), Expect = 3e-04 Identities = 18/100 (18%), Positives = 28/100 (28%) Query: 267 LDPGDAETFRNRARIWERKRDYDRAIADYDQAIAFAPNDAVAYNGRGWMWSLKHETDRAI 326 + E + A + Y+ A + D+ + G G + D AI Sbjct: 31 ISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAI 90 Query: 327 VDYVKATAFDPNYVLAYDNLGLAWWDKGDLDRAISAFDQA 366 Y D + KG+L A S A Sbjct: 91 HSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLA 130 Score = 32.6 bits (74), Expect = 0.003 Identities = 14/108 (12%), Positives = 29/108 (26%), Gaps = 1/108 (0%) Query: 98 PKDAEAFNNRGLIWGHKKDFDRALADYDKAIELNPQIAIAYANRGLIWNDIKHDYVKAIA 157 E + ++ A + L+ + + G Y AI Sbjct: 33 SDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQA-MGQYDLAIH 91 Query: 158 DFDKAIRLDPENNGLYNLRGNAYLRKGDYDQAITSYSQAIFLDSQDPN 205 + +D + L+KG+ +A + A L + Sbjct: 92 SYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELIADKTE 139 Score = 28.7 bits (64), Expect = 0.045 Identities = 15/96 (15%), Positives = 31/96 (32%), Gaps = 2/96 (2%) Query: 377 YNDRGLARMDKNQYDLAIADYNMAILIDAGFVSAYRNR-GNAWNRKGQFDYAIADFDQAI 435 + +Y+ A + ++D + S + G GQ+D AI + Sbjct: 39 LYSLAFNQYQSGKYEDAHKVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGA 97 Query: 436 DHDPDDADAYVGRGRSRIYKADYTKAIADLDQAIRI 471 D + + K + +A + L A + Sbjct: 98 IMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQEL 133
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 31.1 bits (70), Expect = 0.012 Identities = 17/101 (16%), Positives = 26/101 (25%), Gaps = 1/101 (0%) Query: 149 KAQRQTAAKPSTAAPDDQQPTSPAPAPAAPNDQPGDLANDLQAPPDAGEIPAGS-APKAD 207 A P + P P P P + P + P + PK D Sbjct: 58 ADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRD 117 Query: 208 ADDPEAGWGETIDQGEAALPAFKKTAIENNTTVATVTSEYQ 248 E+ + A P + V +V S + Sbjct: 118 VKPVESRPASPFENTAPARPTSSTATAATSKPVTSVASGPR 158
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 99.2 bits (247), Expect = 1e-27 Identities = 40/113 (35%), Positives = 59/113 (52%), Gaps = 12/113 (10%) Query: 65 FALDSAQLDQTARAELDEFAKALKDNRLSTFSFVVEGHTDATGPDRYNQDLSQRRAQSVA 124 F + A L +A LD+ L + S VV G+TD G D YNQ LS+RRAQSV Sbjct: 223 FNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSVV 282 Query: 125 AFLEANGVESVRLEAIGLGKSHPRVANPYDPV------------NRRVEMRIR 165 +L + G+ + ++ A G+G+S+P N D V +RRVE+ ++ Sbjct: 283 DYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEVK 335
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 86.5 bits (214), Expect = 4e-21 Identities = 39/113 (34%), Positives = 54/113 (47%), Gaps = 11/113 (9%) Query: 259 IYFRPASARLDAKSRPLLTEVEGVVGKC--PTLKVEVSGYTDSDGSPEANKALSERRAQA 316 + F A L + + L ++ + V V GYTD GS N+ LSERRAQ+ Sbjct: 221 VLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQS 280 Query: 317 VAEALVAGGVPRQQISAAGHGEENPVAANDTPKNK---------ALNRRIEFS 360 V + L++ G+P +ISA G GE NPV N K A +RR+E Sbjct: 281 VVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 333
>PF06580#Sensor histidine kinase Length = 349 Score = 28.3 bits (63), Expect = 0.017 Identities = 25/139 (17%), Positives = 48/139 (34%), Gaps = 15/139 (10%) Query: 40 LLGWVLIVSGGLQGISLIGAGHVPHFWLQLISVILALLIGLLF---LRHPGNGLLTITLL 96 +GW + G SL G +I I L+GL+ R + L Sbjct: 17 GIGWGVYTLTGFGFASLYG----SPKLHSMIFNIAISLMGLVLTHAYRSFIKRQGWLKLN 72 Query: 97 LIVFFMIEGIAKVVFALTIRPFPNWGWVLGSGLIGILLSVTLWVRIPVTAVCLIGLLLGI 156 + + A VV + W + + I LL+ + T + ++ + Sbjct: 73 MGQIILRVLPACVVIGMV--------WFVANTSIWRLLAFINTKPVAFTLPLALSIIFNV 124 Query: 157 ELISVGAAIAYLAWHVRKS 175 +++ ++ Y WH K+ Sbjct: 125 VVVTFMWSLLYFGWHFFKN 143
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 70.2 bits (172), Expect = 8e-15 Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 4/124 (3%) Query: 564 PSILLIDDSSVLRQLTAQSLQQRGFVVTCAAGSAEALAIIERAPHEFDVIVTDFAMPLVS 623 +IL+ DD + +R + Q+L + G+ V + +A I D++VTD MP + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGD--GDLVVTDVVMPDEN 61 Query: 624 GVEVIRFARNLRSDWPAIIITGYADADSI--ADRPSDVPLLNKPFREKDLIESIFHVIAH 681 +++ + R D P ++++ + A L KPF +LI I +A Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 682 ASAK 685 + Sbjct: 122 PKRR 125 Score = 67.2 bits (164), Expect = 1e-13 Identities = 32/154 (20%), Positives = 62/154 (40%), Gaps = 26/154 (16%) Query: 23 KARVLAVDDDERNLLAIQEVLAPI-----AEIVAVRSGEEALRCLLKQDFAVILLDVLMP 77 A +L DDD AI+ VL ++ + R + D +++ DV+MP Sbjct: 3 GATILVADDDA----AIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMP 58 Query: 78 GLDGYETAGLIRQREQSKRTPLIFLTAINKEDAHMLRGYDAGAVDYVFKPFDPVMLRSKV 137 + ++ I++ P++ ++A N ++ + GA DY+ KPFD Sbjct: 59 DENAFDLLPRIKKAR--PDLPVLVMSAQNTFMT-AIKASEKGAYDYLPKPFDL------- 108 Query: 138 AVFVELHEKTLEIQRKAIAEQALLAKALQAEKEK 171 + + I +A+AE L+ + + Sbjct: 109 -------TELIGIIGRALAEPKRRPSKLEDDSQD 135
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 73.7 bits (181), Expect = 3e-15 Identities = 29/131 (22%), Positives = 56/131 (42%), Gaps = 3/131 (2%) Query: 1485 GAKVLIVDDDIRNIYSLTSVLETYDIEVMHAERGREGIALLEQVPDVDAALIDIMMPEMD 1544 GA +L+ DDD L L +V + D + D++MP+ + Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGD-GDLVVTDVVMPDEN 61 Query: 1545 GYETMRQIRNTPAIAHIPLISVTAKAMKGDRQKCLDAGASDYIAKPVDLDLLLALLRVWI 1604 ++ + +I+ A +P++ ++A+ K + GA DY+ KP DL L+ ++ + Sbjct: 62 AFDLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119 Query: 1605 GRSRARVETSE 1615 + R E Sbjct: 120 AEPKRRPSKLE 130 Score = 44.8 bits (106), Expect = 2e-06 Identities = 33/185 (17%), Positives = 57/185 (30%), Gaps = 31/185 (16%) Query: 1227 VLIVEDDPTFGGLLLGLARSAGLKGVLSTAGSGTLALA--RKLVPDAITLDLGLSDIDGW 1284 +L+ +DD +L AG + + D + D+ + D + + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYD--VRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 1285 VLFDLLR-HDPKTSGIPVHVISGAEDIDDLAS---KGASSISTKPVSSDELMNVFQDIHS 1340 L ++ P +PV V+S KGA KP E Sbjct: 64 DLLPRIKKARP---DLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTE---------- 110 Query: 1341 RKLRIQRRVLVADPDPERRLSLVEAIRDGVTSVTAIGRVAANADDIEL----ASYDAVVL 1396 + I R L E + + D + +GR AA + + D ++ Sbjct: 111 -LIGIIGRAL-----AEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLM 164 Query: 1397 GFGRS 1401 G S Sbjct: 165 ITGES 169
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 67.0 bits (163), Expect = 7e-16 Identities = 35/214 (16%), Positives = 72/214 (33%), Gaps = 18/214 (8%) Query: 10 AEIGREKRERTRTLIVEAGAMLLAERPREGLTVDAVVEAAGVAKGTFYYHFQSIDELASA 69 A +++ + TR I++ L +++ ++ + +AAGV +G Y+HF+ +L S Sbjct: 2 ARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61 Query: 70 VGEKLGESF-DAVLTPARLELQDPVERLTFAFTRFLEKAISDSNWARLVVQSSHSP---- 124 + E + + L DP+ L LE +++ L+ H Sbjct: 62 IWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVG 121 Query: 125 ---------TEFARGIRNNLKADIAEAIVQGRL-SLRDAELAVDIVIGIWLQVTRGILER 174 + ++ + I L + A I+ G + L Sbjct: 122 EMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFA 181 Query: 175 GARPELT---GQAVEAVLRALGSSQSEQRKATKK 205 +L V +L + + AT + Sbjct: 182 PQSFDLKKEARDYVAILLEMYLLCPTLRNPATNE 215
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 107 bits (269), Expect = 2e-30 Identities = 62/253 (24%), Positives = 112/253 (44%), Gaps = 8/253 (3%) Query: 3 KVVVVTGAASGIGKEIALTFARKGAKVVIADLDLDAAEETAREIDPAALRALGVGMDVSN 62 K+ +TGAA GIG+ +A T A +GA + D + + E+ + A A DV + Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 63 EDQVESGISRVVETFGRIDVLVSNAGVQTVAPLVEFDFDKWRKLLSIHLDGAFLTTRAAL 122 ++ +R+ G ID+LV+ AGV + ++W S++ G F +R+ Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128 Query: 123 RQMYRQNSGSIIYMGSVHSKEASPFKAPYVTAKHGLIGLAKVVAKEGAAHGVRANVICPG 182 + M + SGSI+ +GS + A Y ++K + K + E A + +R N++ PG Sbjct: 129 KYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPG 188 Query: 183 FVRTPLVEKQIPEQARELGISPEDVVKTMMLRETVD---GEFTTVQDVAETALFLAAFPS 239 T + ++ E V+K + + D+A+ LFL + + Sbjct: 189 STETDMQWSLWADENGA-----EQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQA 243 Query: 240 NALTGQSIVVSHG 252 +T ++ V G Sbjct: 244 GHITMHNLCVDGG 256
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 54.4 bits (131), Expect = 3e-10 Identities = 32/209 (15%), Positives = 71/209 (33%), Gaps = 15/209 (7%) Query: 77 DMGAIVKKGQKLAELSAVDYQNKVTAAEADVDAAKAALAQA--SAQEERFRILLGKGFAT 134 D +++ K +A+ + ++ +NK A ++ K+ L Q + L T Sbjct: 239 DFSSLLHKQA-IAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQL----VT 293 Query: 135 HSQYDEALKSLQSARAQVQATEANLRIARNQLSYTQLTATDDGVVTATGA-DPGQVVAAG 193 +E L L+ + L + + + A V G VV Sbjct: 294 QLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTA 353 Query: 194 QMVVEVSGNDAREAVFA-VATSDVTRAKLGMAVNVSLQ---GRLDIAVTGTIREISPEA- 248 + ++ + D V A V D+ +G + ++ + G ++ I+ +A Sbjct: 354 ETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAI 413 Query: 249 -DSATGT-YQVKVALASPPSEMRLGAVVI 275 D G + V +++ + + Sbjct: 414 EDQRLGLVFNVIISIEENCLSTGNKNIPL 442 Score = 38.3 bits (89), Expect = 4e-05 Identities = 21/109 (19%), Positives = 37/109 (33%), Gaps = 9/109 (8%) Query: 67 VGGRMLSRQVDMGAIVKKGQKLAELSAVDYQNKVTAAEADVDAAKAALAQASAQEERFRI 126 + V G V+KG L +L+A AEAD +++L QA ++ R++I Sbjct: 103 ENSIVKEIIVKEGESVRKGDVLLKLTA-------LGAEADTLKTQSSLLQARLEQTRYQI 155 Query: 127 LLG--KGFATHSQYDEALKSLQSARAQVQATEANLRIARNQLSYTQLTA 173 L + Q+ + +L + Q Sbjct: 156 LSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQ 204
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 462 bits (1189), Expect = e-148 Identities = 223/1047 (21%), Positives = 420/1047 (40%), Gaps = 64/1047 (6%) Query: 7 LSEWAVHNRALVVFLMLICVIGGVSAYERLGRQEDPDFTVQTMVVQANWPGATTADTLKQ 66 ++ + + L +I ++ G A +L + P + V AN+PGA Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 67 VTDRIEKKLEETPNLDYIKSYT-KPGQATIFVYLKESTPKRDLSDIWYQVRKKVSDIGPT 125 VT IE+ + NL Y+ S + G TI + + T D QV+ K+ P Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGT---DPDIAQVQVQNKLQLATPL 117 Query: 126 LPQGVVGP-FFNDEFGDVFGTVYGITYDG--FSAREARDFAE-TARGEFLRAPDVGKVDI 181 LPQ V ++ + V G D + + D+ + R VG V + Sbjct: 118 LPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQL 177 Query: 182 YGDQDEKVYLNFSPQKLANLKLNLDDVLAAIARQNAVAPSGIINTPQE------NMLVDV 235 +G Q + + L KL DV+ + QN +G + N + Sbjct: 178 FGAQYA-MRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIA 236 Query: 236 TGSLLSSDGIANLNLWI--DGRFYKLTDIAQVQRGYSDPPSKMFRINGKPAIGIGVNMRE 293 + + + L + DG +L D+A+V+ G + + RINGKPA G+G+ + Sbjct: 237 QTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNV-IARINGKPAAGLGIKLAT 295 Query: 294 GGNNLDFGKGLHEAAERLKQRFPVGIELNLVSDQPEVVHEAIGGFTEALVEAIVIVLVVS 353 G N LD K + L+ FP G+++ D V +I + L EAI++V +V Sbjct: 296 GANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVM 355 Query: 354 FLSLG-FRAGLVVALSIPLVLAIVFVAMDALGISLQRISLGALIIALGLLVDDAMITIEM 412 +L L RA L+ +++P+VL F + A G S+ +++ +++A+GLLVDDA++ +E Sbjct: 356 YLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVEN 415 Query: 413 MISKI--EEGMEKIKAATFAYTSTAFPMLTGTLITILGFLPIGFANSNTGQYCFSLFVVI 470 + ++ E+ + +A + + ++ ++ F+P+ F +TG + I Sbjct: 416 -VERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITI 474 Query: 471 AVALVASWFVAVVFAPVIGLSILPSHTKKAQANAEPGRFMRAFERLLGFAM--------- 521 A+ S VA++ P + ++L + + N G F F ++ Sbjct: 475 VSAMALSVLVALILTPALCATLLKPVSAEHHEN--KGGFFGWFNTTFDHSVNHYTNSVGK 532 Query: 522 --RHRWPTIAAALILFSASLYGMGFVQQQFFPTSNRPELLVTMTLPKNASIAATQAQTER 579 + ++ + + + F P ++ L + LP A+ TQ ++ Sbjct: 533 ILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQ 592 Query: 580 LEKALAGDPDIARFSSYVGGGAIRFYLPLDVQLDNDFMAETVVVTKDLKARDRVQARLET 639 + + S + G Q N MA V K + R+ + E Sbjct: 593 VTDYYLKNEKANVESVFTVNG-----FSFSGQAQNAGMA--FVSLKPWEERNGDENSAEA 645 Query: 640 LFA------GSFPD---VAVRISR-LELGPPVGWPVQ-YRVSAPTTEEARQYAEQVAQTL 688 + G D + + +ELG G+ + + + Q Q+ Sbjct: 646 VIHRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMA 705 Query: 689 R-ASGLVRNVNYDWAEKNKALRIVVDQDRVRQAGLSSEELAQALNRVISGSTVTQIRDSI 747 + +V + E ++ VDQ++ + G+S ++ Q ++ + G+ V D Sbjct: 706 AQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRG 765 Query: 748 YLVDVVARAESDERSSVEALRNLQITTPTGASVPLRELAQFQYDLDDGYVWRRGRLPTIT 807 + + +A++ R E + L + + G VP + + R LP++ Sbjct: 766 RVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSME 825 Query: 808 VQAEPLPGLQPASVHGRIAGAIEGLRKSMPAGTLLETGGTVEKSAQSNAALLAQFPLMIT 867 +Q E PG + G +E L +PAG + G + S A + Sbjct: 826 IQGEAAPG----TSSGDAMALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFV 881 Query: 868 LMLTVLMVQLGSFRQLAMVISVAPLGLIGVAAALLTTNTPMGFIATLGIIALAGMIIRNS 927 ++ L S+ V+ V PLG++GV A N +G++ G+ +N+ Sbjct: 882 VVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNA 941 Query: 928 VILVHQIEH-ERAQGIEPWKAVIDATTHRFRPIMLTAAAAILGMIPIMHDVFWG-----P 981 +++V + +G +A + A R RPI++T+ A ILG++P+ G Sbjct: 942 ILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNA 1001 Query: 982 MAFAIVGGLAVATVLTLVFLPALYVAV 1008 + ++GG+ AT+L + F+P +V + Sbjct: 1002 VGIGVMGGMVSATLLAIFFVPVFFVVI 1028
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 27.3 bits (60), Expect = 0.037 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 8/69 (11%) Query: 6 VNSSGRLAHSPIIAFKRMGA----SPQQGEKTMFNTVKTAALSALIGLGALTAVPAHADS 61 + + R + P+++ +GA +PQQ F TV + A++G G T S Sbjct: 3 IQQTHRKINRPLVSLALVGALVSITPQQSHAAFFTTV---IIPAIVG-GIATGAAVGTVS 58 Query: 62 LYLGFGNNQ 70 LG+G Q Sbjct: 59 GLLGWGLKQ 67
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 70.7 bits (173), Expect = 4e-15 Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 14/114 (12%) Query: 639 FEFGSSSISDTEVQKLEGVASAMEKLLKKNPAETFLIEGHTDAVGTPEANLALSDRRAEA 698 F F +++ L+ + S + L K+ + + G+TD +G+ N LS+RRA++ Sbjct: 223 FNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVV--VLGYTDRIGSDAYNQGLSERRAQS 280 Query: 699 VAEALTNAFGIPPENLTTQGYGEQY-----------LKVNTQAPNRENRRVAIR 741 V + L + GIP + ++ +G GE + +RRV I Sbjct: 281 VVDYLI-SKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 333
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 65.1 bits (158), Expect = 2e-14 Identities = 51/209 (24%), Positives = 88/209 (42%), Gaps = 22/209 (10%) Query: 3 LKGKTLFISGGSRGIGLAIALRAARDGANVTIAAKTAEPHPKLPGTIYSAAQEIEQAGGK 62 ++GK FI+G ++GIG A+A A GA++ E K+ ++ + A+ E Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEA---- 61 Query: 63 ALPVLCDIREEAQVAEAVAKTVEKFGGIDICVNNASAIQLTGTLQTDMKRYDLMHQINTR 122 P D+R+ A + E A+ + G IDI VN A ++ + ++ +N+ Sbjct: 62 -FPA--DVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNST 118 Query: 123 GTFLVSKMCIPHLKLADNPHILNLA------PPLDMKAKWFKNHVAYTMAKFGMSMCTLG 176 G F S+ ++ + I+ + P M AY +K M T Sbjct: 119 GVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMA--------AYASSKAAAVMFTKC 170 Query: 177 MSAEFAKDGIAVNSLWPISTIDTAAVRNL 205 + E A+ I N + P ST +T +L Sbjct: 171 LGLELAEYNIRCNIVSPGST-ETDMQWSL 198
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 27.0 bits (60), Expect = 0.042 Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 13/55 (23%) Query: 89 VTAEEAVEA-GEEIELTLASGVTV------------KAELVGRDPSTGVALLKPA 130 + AV+A + LA G V +A GR+P TG + A Sbjct: 20 KDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGRNPQTGEEIKIKA 74
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 81.2 bits (200), Expect = 2e-19 Identities = 44/211 (20%), Positives = 77/211 (36%), Gaps = 30/211 (14%) Query: 49 TTVADAVDRIGPAVCRIERIGGQGGH-GSGFVIAPDGLVVTNFHVV----GDARTVRV-- 101 + D + V I+ G SG V+ D ++TN HVV GD ++ Sbjct: 77 HQITDTTNGHYAPVTYIQVEAPTGTFIASGVVVGKD-TLLTNKHVVDATHGDPHALKAFP 135 Query: 102 ------SMPDGASSEGRVLGRDPDTDIALV--------RADGSFTDVAPLGDSKRLRRGQ 147 + P+G + ++ + D+A+V + G A + ++ + Q Sbjct: 136 SAINQDNYPNGGFTAEQITKYSGEGDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQ 195 Query: 148 IAIAIGNPLGFEWTVTSGVVSALGRSMRASTGRLIDDVIQTDAALNPGNSGGPLVSSAGE 207 G P + + S T L + +Q D + GNSG P+ + E Sbjct: 196 NITVTGYPGDKPV-------ATMWESKGKIT-YLKGEAMQYDLSTTGGNSGSPVFNEKNE 247 Query: 208 VIGVNTAMIHGAQGIAFAVASNTANFVISEI 238 VIG++ + A + N NF+ I Sbjct: 248 VIGIHWGGVPNEFNGAVFINENVRNFLKQNI 278
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 65.0 bits (158), Expect = 3e-15 Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 1/108 (0%) Query: 8 RSNRDRTEATRADLIAAARKLFTEKSYAETGTPEIVTAAGVTRGALYHHFADKQALFAAV 67 R + + TR ++ A +LF+++ + T EI AAGVTRGA+Y HF DK LF+ + Sbjct: 3 RKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI 62 Query: 68 VEQEAQAVAQ-EIERASPSSLEARDALIAGSDAYLDAMRAPGRTRLLL 114 E + + E+E + + L L++ R RLL+ Sbjct: 63 WELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLM 110
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 54.6 bits (131), Expect = 2e-11 Identities = 30/210 (14%), Positives = 70/210 (33%), Gaps = 19/210 (9%) Query: 1 MALDKEETGERVLAIAEVLLNEGGMDNLKARTIAEQAGISVGSVYNLFSDLDGVHRAVNM 60 + +ET + +L +A L ++ G+ + IA+ AG++ G++Y F D + + Sbjct: 5 TKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWE 64 Query: 61 RLLDRLGAAGAAAMADLSQRGITDVRQRLLALAGAYVNFVEGHPGSWPALLAFNRRRPTL 120 +G A ++ +R+ L+ + + V L+ + Sbjct: 65 LSESNIGELELEYQAKFPGDPLSVLREILIHVLESTV-----TEERRRLLMEIIFHKCEF 119 Query: 121 AEPDAYEARLDQLFE---------IIAGVLAGGDFDLDDDTRRIAARTLWSSVHGIVTSG 171 A + + + + D TRR A + G ++ Sbjct: 120 VGEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAA-----IIMRGYISGL 174 Query: 172 YAGRSVRRQAGEIDQQIELLVAVFIRGLER 201 Q+ ++ ++ VA+ + Sbjct: 175 MENWLFAPQSFDLKKEARDYVAILLEMYLL 204
>PF06776#Invasion associated locus B Length = 214 Score = 27.6 bits (61), Expect = 0.011 Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 3/38 (7%) Query: 6 LSVLAVSMMAATSLAGQAAPTNAPVAPQSNYTKVDWQK 43 +LA +M A S + +A A +S + DWQ Sbjct: 51 RLMLAGAMAIALSFG-WSDRADAQGAVRSVHG--DWQI 85
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 46.0 bits (109), Expect = 2e-07 Identities = 38/165 (23%), Positives = 65/165 (39%), Gaps = 1/165 (0%) Query: 5 LIALFIAAFAFGTTEFVIAGVLPQVAEGLGVSVPSAGYLVSGYACGIAIGGPLLALVTKS 64 LI L I +F E V+ LP +A S ++ + + +IG + ++ Sbjct: 16 LIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQ 75 Query: 65 LPRKTLLLGLAIAFTIGQAACALAPDFTSMLLL-RIAVAVAHGAYFGVAMVVAVGLVPED 123 L K LLL I G + F S+L++ R A+ + MVV +P++ Sbjct: 76 LGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKE 135 Query: 124 KRGMAVAVILSGLTVSNVIGVPAGTAIGNIWGWRATFWVMCALGV 168 RG A +I S + + +G G I + W + + Sbjct: 136 NRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITII 180
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 65.5 bits (159), Expect = 1e-14 Identities = 55/193 (28%), Positives = 90/193 (46%), Gaps = 4/193 (2%) Query: 10 AVVTGASSGIGAIYADRLAGQGYDLVLVARRADRLEELAEKLRYAYDRKVSVISADLSDD 69 A +TGA+ GIG A LA QG + V ++LE++ L+ A R AD+ D Sbjct: 11 AFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLK-AEARHAEAFPADVRDS 69 Query: 70 DDVRRVEQAISAD-DSVTLLVNNAGLGGQQVVATADADAAERMIKVNVIALTRLTRAVLP 128 + + I + + +LVN AG+ ++ + + E VN + +R+V Sbjct: 70 AAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSK 129 Query: 129 GLLARNRGAIVNIASVLAYETSFG-GIYSGTKAYVVNFTEALHREVAGTGVKVQVVLPGA 187 ++ R G+IV + S A Y+ +KA V FT+ L E+A ++ +V PG+ Sbjct: 130 YMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPGS 189 Query: 188 TRTDF-WELAGSD 199 T TD W L + Sbjct: 190 TETDMQWSLWADE 202
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 66.1 bits (161), Expect = 7e-14 Identities = 38/153 (24%), Positives = 69/153 (45%), Gaps = 1/153 (0%) Query: 5 LFWLALGSFTISTEGFVISSLLPDIARDAGISIPLAGTLITAFALAYAIGTPILATLTGE 64 L WL + SF V++ LPDIA D + TAF L ++IGT + L+ + Sbjct: 16 LIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQ 75 Query: 65 WDRRRVILWTLVFFVIGNIAAALS-SSFEVLLIARVIMALSSGLFAATAQGTAVALVDDH 123 +R++L+ ++ G++ + S F +L++AR I + F A + Sbjct: 76 LGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKE 135 Query: 124 HRARAIAVVVGGTTVAVAVGAPLGALVATIAGW 156 +R +A ++ + VG +G ++A W Sbjct: 136 NRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHW 168
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 49.9 bits (119), Expect = 2e-10 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Query: 98 AFVKDLAVHPEARGKGIGEALMWQAFATFRDRGAVHVDLKTNTVENAAAIRLYERLG 154 A ++D+AV + R KG+G AL+ +A ++ + L+T + N +A Y + Sbjct: 90 ALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDI-NISACHFYAKHH 145
>PF06776#Invasion associated locus B Length = 214 Score = 28.7 bits (64), Expect = 0.031 Identities = 22/84 (26%), Positives = 27/84 (32%), Gaps = 14/84 (16%) Query: 120 PETVSVLPQSSGIAPIQTAELTPATA---------PALDAAAPPAAATAAFAGSTPAAPA 170 P T +P I + AEL+P A A A A +F S A Sbjct: 15 PVTNHAVPALKAI-QMGPAELSPMLASCRRLARRNGARLMLAGAMAIALSFGWSDRADAQ 73 Query: 171 VPAVMTANAWQ----APPPARAGQ 190 WQ PP A+A Q Sbjct: 74 GAVRSVHGDWQIRCDTPPGAKAEQ 97
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 33.7 bits (77), Expect = 0.001 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%) Query: 124 LMADEINRASPRTQSALLQAMQEYHVTIAGARYDLPAPFHVLATQN-PLEQE 174 L DEI Q+ LL+ +Q+ T G R + + ++A N L+Q Sbjct: 235 LFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQS 286
>56KDTSANTIGN#Rickettsia 56kDa type-specific antigen protein signature. Length = 533 Score = 30.7 bits (69), Expect = 0.029 Identities = 12/37 (32%), Positives = 20/37 (54%) Query: 761 PAAPMPSQAAIARIDAYMQQGGTVLFDTRDQFANGIG 797 P +P+ A+I +I + +Q+ G L + RD F I Sbjct: 287 PDTGLPNSASIEQIQSKIQELGDTLEELRDSFDGYIN 323
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 99.5 bits (248), Expect = 3e-26 Identities = 35/133 (26%), Positives = 61/133 (45%), Gaps = 1/133 (0%) Query: 3 SDAHILIVDDDKGIRDLLQEFFQKRGLHTSVAADGTEMEAVLRRAQVDLIVLDVMLPGKS 62 + A IL+ DDD IR +L + + G + ++ + + DL+V DV++P ++ Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 63 GLELCRDLRAQYS-TPIIMLTAVTETTDRVVGLEMGADDYVPKPFDPRELLARIRAVLRR 121 +L ++ P+++++A + E GA DY+PKPFD EL+ I L Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 122 NGAAEPKRATAKQ 134 K Q Sbjct: 122 PKRRPSKLEDDSQ 134
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 28.3 bits (63), Expect = 0.032 Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 20/94 (21%) Query: 1 MKRLLPQ---TLPAWVLLIVIAGLLISQVATLYIVSRDRAVANDVV----------DLYR 47 M+ Q TL +++IVI G+L S V + ++++A V D+Y+ Sbjct: 1 MRATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYK 60 Query: 48 LNDRAF-----SLVQLMSGAT--PEERKATAAGL 74 L++ + L L+ T P G Sbjct: 61 LDNHHYPTTNQGLESLVEAPTLPPLAANYNKEGY 94
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 54.2 bits (130), Expect = 1e-09 Identities = 30/129 (23%), Positives = 49/129 (37%), Gaps = 27/129 (20%) Query: 852 TDIFFYSGKVVPGPEQTPVLDRLADQIKEFAENARKSGVTARFMLTGHSDATGRETANAS 911 +D+ F K PE LD+L Q+ ++ G++D G + N Sbjct: 219 SDVLFNFNKATLKPEGQAALDQLYSQLSNLDPK------DGSVVVLGYTDRIGSDAYNQG 272 Query: 912 ISAARAETVRALLNKRGVAPELLLVRGAGTFEPLVPENSQTGSST--------------- 956 +S RA++V L +G+ + + RG G N TG++ Sbjct: 273 LSERRAQSVVDYLISKGIPADKISARGMG------ESNPVTGNTCDNVKQRAALIDCLAP 326 Query: 957 NRRVSITVN 965 +RRV I V Sbjct: 327 DRRVEIEVK 335
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 84.9 bits (210), Expect = 1e-22 Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 2/118 (1%) Query: 2 AKLLIVEDDESVRTLAARALERAGHAIDIAADGAQGLALIRAAHGGYDLVVSDIRMPEMD 61 A +L+ +DD ++RT+ +AL RAG+ + I ++ A I A G DLVV+D+ MP+ + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDG--DLVVTDVVMPDEN 61 Query: 62 GIEMAIAAAALFPAMKIMLMTGYADQRERAEELNGIILDVVQKPFTLAEIRSRVERAL 119 ++ P + +++M+ + D + KPF L E+ + RAL Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119
>PF01206#SirA family protein Length = 76 Score = 85.2 bits (211), Expect = 4e-26 Identities = 31/68 (45%), Positives = 41/68 (60%) Query: 9 DLKGLNCPLPVLKAKKRLAGMQPGSRLWLETTDPLAVIDIPAFCSDAGHQLVETAAVSGG 68 D GLNCPLP+LKAKK LA M G L++ TDP +V D +F GH+L+E G Sbjct: 9 DATGLNCPLPILKAKKTLATMNAGEVLYVMATDPGSVKDFESFSKQTGHELLEQKEEDGT 68 Query: 69 HRFLVERG 76 + F ++R Sbjct: 69 YHFRLKRA 76
>MALTOSEBP#Maltose binding protein signature. Length = 396 Score = 42.4 bits (99), Expect = 2e-06 Identities = 60/232 (25%), Positives = 80/232 (34%), Gaps = 58/232 (25%) Query: 57 TLEWGTPFYAKVQTSAAVGEAPDVMTYHASRIPLAVSQDLLEEITADDMSKMGLSASDFA 116 T+E K AA G+ PD++ + R LL EIT D + L Sbjct: 62 TVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYP---- 117 Query: 117 QTTMGAVTVDGKQYAVPLDTHPIVLYYNRVLLKKAGVLGDDGRPVGMKNKEEFTATLQKL 176 T AV +GK A P+ + L YN+ LL P K EE A ++L Sbjct: 118 -FTWDAVRYNGKLIAYPIAVEALSLIYNKDLL-----------PNPPKTWEEIPALDKEL 165 Query: 177 KDAGVE----------FPLGSVTADGNFMYRTIYSLVCQQGGELLTGNEFLAGDNGKKLA 226 K G F + ADG + ++ +NGK Sbjct: 166 KAKGKSALMFNLQEPYFTWPLIAADGGYAFKY---------------------ENGKYDI 204 Query: 227 NALAVLQGWTKAGL-----------QSTYTDYPATVALFTSGKAAMMINGVW 267 + V KAGL + TDY A F G+ AM ING W Sbjct: 205 KDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPW 256
>MICOLLPTASE#Microbial collagenase metalloprotease (M9) signature. Length = 1104 Score = 29.7 bits (66), Expect = 0.003 Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 1/36 (2%) Query: 23 WIVVEGHPTMQTAVQHTTEDGKVMSGTWRASPGTYH 58 W++ + V + DG +S T + +PG Y+ Sbjct: 1049 WLLYSAD-DLSNYVDYANADGNKLSNTCKLNPGKYY 1083
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 33.8 bits (77), Expect = 0.001 Identities = 18/50 (36%), Positives = 28/50 (56%) Query: 75 TGGIDLSVGSILAASAMVAVLVSLVPDWGLLGVPAAILVGLGFGLVNGLL 124 TG ID S+ +I A V+ +S L+G P + LVG G+++G+L Sbjct: 361 TGAIDASLTTISTVLASVSSGISAAATTSLVGAPVSALVGAVTGIISGIL 410
>ARGREPRESSOR#Bacterial arginine repressor signature. Length = 149 Score = 32.5 bits (74), Expect = 6e-04 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 5/44 (11%) Query: 12 GRQRQIVELLRDRPFASVRELQERL-----GVSAATVRRDIDRI 50 R +I E++ + EL + L V+ ATV RDI + Sbjct: 5 QRHIKIREIITANEIETQDELVDILKKDGYNVTQATVSRDIKEL 48
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 41.1 bits (96), Expect = 3e-06 Identities = 35/145 (24%), Positives = 50/145 (34%), Gaps = 14/145 (9%) Query: 11 RNLMWGIPASLILH-VLVATLLVYGLPVAPQQPREEQPVNVAIVPPPDQPKP-------- 61 R W S+ +H +VA LL + + P QP++V +V P D P Sbjct: 12 RRFPWPTLLSVCIHGAVVAGLLYTSVHQVIELPAPAQPISVTMVAPADLEPPQAVQPPPE 71 Query: 62 ---KPVPPAPKPPEPKVEKPPEQKVEKQPPSEKQPKAPPVEVLKPVFQYGDKDTGPRKSL 118 +P P PEP E P + K P K VE K ++ P Sbjct: 72 PVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKR--DVKPVESRPASPF 129 Query: 119 DGASAQDSSPSPAKDDDSKPPAVPK 143 + + + S A SKP Sbjct: 130 ENTAPARPTSSTATAATSKPVTSVA 154
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 53.9 bits (129), Expect = 8e-10 Identities = 51/269 (18%), Positives = 84/269 (31%), Gaps = 50/269 (18%) Query: 35 PRSEQQPDQQEQPVNVAIVPPPEKPKPKPAPKPPEPTPEKKAEKPPEQKPPPEPPKPPDD 94 P + Q N I E P P PAP P T E AE ++ Sbjct: 1000 PNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQE------------ 1047 Query: 95 HVLKRVFQYGQKDTGPEKSLDGNSAKPNTPSPAKDEAVKPPITPTPVPTRPAPVATPQQK 154 K+++ N + E K + T+ VA + Sbjct: 1048 ----------------SKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSE 1091 Query: 155 AEPSKPDEK--PATIAPDGKP-AQGEEKQEAA--APDAKPAQNE------------EKQA 197 + ++ E AT+ + K + E+ QE P Q + E Sbjct: 1092 TKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDP 1151 Query: 198 TEDADKQQADKRELAP--QPAEKQAVVTPKPLAAETGDK--PAPPPSAEKAKPKPAK-TM 252 T + + Q+ A QPA++ + +P+ T + + E P + T+ Sbjct: 1152 TVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTV 1211 Query: 253 NFKSAKAFKAPSGNARRPSPTNDAAAAGS 281 N +S+ K + R P N A S Sbjct: 1212 NSESSNKPKNRHRRSVRSVPHNVEPATTS 1240 Score = 43.5 bits (102), Expect = 2e-06 Identities = 42/261 (16%), Positives = 82/261 (31%), Gaps = 55/261 (21%) Query: 42 DQQEQPVNVAIVPPPEKPKPKPAPKPPEPTPEKKAEKPPEQKPPPEPPKPPDDHVLKRVF 101 +++ Q V+ + P A P P+ ++ + E PP P P + Sbjct: 986 EKRNQTVDTTNITTPNN---IQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAE 1042 Query: 102 QYGQKDTGPEKSLDGNSAKPNTPSPAKDEAVKPPITPTPVPTRPAPVATPQQKAEPSKPD 161 Q+ K+++ N + ++ A+ +K + Sbjct: 1043 NSKQE----SKTVEKNEQDATETTAQN-----------------------REVAKEAKSN 1075 Query: 162 EKPATIAPDGKPAQGEEKQEAAAPDAKPAQNEEKQATEDADKQQADKRELAPQPAEKQAV 221 K T + + E K+ + + +E E +K + + + P + + Sbjct: 1076 VKANTQTNEVAQSGSETKE------TQTTETKETATVEKEEKAKVETEKTQEVP-KVTSQ 1128 Query: 222 VTPKPLAAETGDKPAPPPSAEKAKPKPAKTMNFKSAKAFKAPSGNARRPSPTNDAAAAGS 281 V+PK +ET A P + T+N K + S TN A Sbjct: 1129 VSPKQEQSETVQPQAEP------ARENDPTVNIKEPQ------------SQTNTTADTEQ 1170 Query: 282 PIYSGLPGVRKLYSQGATGNA 302 P V + ++ T N Sbjct: 1171 PAKETSSNVEQPVTESTTVNT 1191
>PERTACTIN#Pertactin signature. Length = 922 Score = 29.3 bits (65), Expect = 0.030 Identities = 45/168 (26%), Positives = 60/168 (35%), Gaps = 18/168 (10%) Query: 208 IAVMDHGRLAQLATPRELYHEPANEMVASFISQGILLPADVLTGEDGGHCKVRVLGTELV 267 +A MD + PA V G +P DG + V V + + Sbjct: 243 VAAMDGAIVHLQRATIRRGDAPAGGAVPGGAVPGGAVPGGFGPLLDGWY-GVDVSDSTVD 301 Query: 268 VRCRAGEPPRAGAKICC-RSADLDVSTDGPGFDGLVKRVIYQGGGARIEFAPAAGPDLTL 326 + E P+ GA I R A + VS G VI GGGAR PA+ +TL Sbjct: 302 LAQSIVEAPQLGAAIRAGRGARVTVS--GGSLSAPHGNVIETGGGARRFPPPASPLSITL 359 Query: 327 --------------HFEQPDPLTLESGAQARLRIKSGWLIPAAVAVAG 360 +P LTL GAQ + I + L P A +G Sbjct: 360 QAGARAQGRALLYRVLPEPVKLTLAGGAQGQGDIVATELPPIPGASSG 407
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 31.0 bits (70), Expect = 0.011 Identities = 11/43 (25%), Positives = 19/43 (44%) Query: 14 MATGQISRWFAEEGARVKKGDVLFEIETDKAAMEIDAPASGVL 56 + + +EG V+KGDVL ++ A + S +L Sbjct: 102 IENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLL 144
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 76.0 bits (187), Expect = 3e-18 Identities = 32/142 (22%), Positives = 60/142 (42%), Gaps = 5/142 (3%) Query: 1 MIAPRIMVVEDEEPLGVLLRYNLESEGYQVEVVTRGDEAEIRLQENVPDLLVLDWMVPAV 60 M I+V +D+ + +L L GY V + + + DL+V D ++P Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 61 SGIELCRRLRMRPETERLPIIMLTARGEESDRVRGLSTGADDYLVKPFSTPEFMA---RV 117 + +L R++ LP+++++A+ ++ GA DYL KPF E + R Sbjct: 61 NAFDLLPRIKKA--RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRA 118 Query: 118 KALLRRAKPEVLSSVLKVGDIV 139 A +R ++ +V Sbjct: 119 LAEPKRRPSKLEDDSQDGMPLV 140
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 65.6 bits (160), Expect = 7e-13 Identities = 30/127 (23%), Positives = 52/127 (40%), Gaps = 4/127 (3%) Query: 1263 ILVAEDNEVNQMVFTQILGETGYGFEIVGNGRKALDAFGKLNPCMILMDVSMPEMSGLEA 1322 ILVA+D+ + V Q L GY I N + +++ DV MP+ + + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 1323 TAAIRQLEQQTGTHVPIVGVTAHALKGDRERCLEAGMDDYLPKPISPRALLEKVERWLGA 1382 I++ +P++ ++A + E G DYLPKP L+ + R L Sbjct: 66 LPRIKKA----RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 1383 GRQVQRN 1389 ++ Sbjct: 122 PKRRPSK 128 Score = 58.3 bits (141), Expect = 1e-10 Identities = 51/257 (19%), Positives = 91/257 (35%), Gaps = 56/257 (21%) Query: 1081 TGARVLIVDDNAVNRAILTEQMTSWTFDSCAAESGAEGLKVLIAAAAYGVPVDCVVLDYQ 1140 TGA +L+ DD+A R +L + ++ +D + A + + A D VV D Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAG-----DGDLVVTDVV 56 Query: 1141 MPEMSGAEMARIVRNTGGLADTPIIMLTSVDQSLANTSYRDLGIDAQLIKPARSSVLLET 1200 MP+ + ++ ++ D P++++++ + + + G L KP L Sbjct: 57 MPDENAFDLLPRIKKAR--PDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFD----LTE 110 Query: 1201 LVATIQRHRHATDSHAVQPLAAERPDVPQPPPLALSEQRAQLQPPPVRPRL--------P 1252 L+ I R AL+E + + + Sbjct: 111 LIGIIGR--------------------------ALAEPKRRPSKLEDDSQDGMPLVGRSA 144 Query: 1253 ATGGDGHRLDILVAEDNEVNQMVFTQILGETGYGFEIVG-----NGRKALDAFGKLNPCM 1307 A L L+ D + I GE+G G E+V G++ F +N Sbjct: 145 AMQEIYRVLARLMQTDLTL------MITGESGTGKELVARALHDYGKRRNGPFVAINMAA 198 Query: 1308 ILMDVSMPEMSGLEATA 1324 I D+ E+ G E A Sbjct: 199 IPRDLIESELFGHEKGA 215
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.9 bits (64), Expect = 0.022 Identities = 13/54 (24%), Positives = 20/54 (37%) Query: 2 SDATNASPALLDVRDVSKAFGTVEVLRSVSLQVKRGEVVTVIGPSGSGKTTLLR 55 + L ++ V K V R + K V + G G GK+TL+ Sbjct: 561 TPDDYKPRRLRYLQLVGKYILMGHVARVMEPGCKFDYSVVLEGTGGIGKSTLIN 614
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 35.5 bits (82), Expect = 3e-04 Identities = 21/131 (16%), Positives = 52/131 (39%), Gaps = 26/131 (19%) Query: 65 GKTTLAQIMARELGVNFRSTSGPVIAKAGDLAALLTNLEEGDVLFIDEIHRLNPAVEEIL 124 G+T+ + IM+R L + P + + + ++ GD++ +D +E I+ Sbjct: 186 GRTSHSAIMSRSLEI-------PAVVGTKE---VTEKIQHGDMVIVD-------GIEGIV 228 Query: 125 YPAMEDFQLDLIIGEGPAARSVKIDLARFTLVAATTRLGLLTNPLRDRFGIPVRLNFYTV 184 + ++ + A K + A+ +TT+ G + + N T Sbjct: 229 IVNPTEEEVKAYEEKRAAFEKQKQEWAKLVGEPSTTKDGAH---------VELAANIGTP 279 Query: 185 EELEQIVRRGA 195 ++++ ++ G Sbjct: 280 KDVDGVLANGG 290
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 29.4 bits (66), Expect = 0.006 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 8/73 (10%) Query: 11 GLFGGSFNPPHAGHALVAEIALRRLAL-DQLWWMVTPGNPLKSTRELAPLAERLQLSEQ- 68 ++ GSF+P GH +I R L DQ++ V NP K + + + ERL+ + Sbjct: 3 AIYPGSFDPITFGH---LDIIERGCRLFDQVYVAVL-RNPNK--QPMFSVQERLEQIAKA 56 Query: 69 IARNPKIKVTAFE 81 IA P +V +FE Sbjct: 57 IAHLPNAQVDSFE 69
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 44.8 bits (106), Expect = 3e-07 Identities = 26/128 (20%), Positives = 45/128 (35%), Gaps = 11/128 (8%) Query: 133 VPVINENDTVATSEIRYGDNDRLAARVATMMGADLLVLLSDIDGLYTAPPARDPKAKFIP 192 VPVI E+ + E D D ++A + AD+ ++L+D++G + Sbjct: 197 VPVILEDGEIKGVEAVI-DKDLAGEKLAEEVNADIFMILTDVNGAALYYGTEKEQW---- 251 Query: 193 VVDRITPDIEAMAGAAASELSRGGMRTKLDAG-KIATAAGTAMIITSGTRLSPLMAIERG 251 + + + E G M K+ A + G II L + G Sbjct: 252 -LREVKVE-ELRKYYEEGHFKAGSMGPKVLAAIRFIEWGGERAIIAH---LEKAVEALEG 306 Query: 252 ERATFFRP 259 + T P Sbjct: 307 KTGTQVLP 314
>FLGHOOKFLIK#Flagellar hook-length control protein signature. Length = 375 Score = 30.6 bits (68), Expect = 0.005 Identities = 18/53 (33%), Positives = 25/53 (47%) Query: 106 AKPAKKAAVKAEAKAEVAAEAAPKEAKAKKEAAPKADVTAETAAAPLFKAPKG 158 A+P +A++KAEV + +P A A P T AAP+ AP G Sbjct: 184 AQPLTPLVAEAQSKAEVISTPSPVTAAASPLITPHQTQPLPTVAAPVLSAPLG 236
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 32.2 bits (73), Expect = 0.003 Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 9/74 (12%) Query: 75 NHPLAYYILGTLGIGYDN----EKALRYFARAVAEEPQNPYYHLSLGETYLKVSEFTPAI 130 +H + + LG LG + A+ ++ + + P + E L+ E A Sbjct: 66 DHYDSRFFLG-LGACRQAMGQYDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEA- 123 Query: 131 RHIQQALDLKPDLV 144 + L L +L+ Sbjct: 124 ---ESGLFLAQELI 134 Score = 29.9 bits (67), Expect = 0.015 Identities = 19/83 (22%), Positives = 30/83 (36%) Query: 133 IQQALDLKPDLVEALCALGDAYNEFDKGELALPLFEKALKIDRYHPLARLGLPYALASLG 192 I ++ D +E L +L + K E A +F+ +D Y LGL ++G Sbjct: 25 IAMLNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMG 84 Query: 193 RMDEAAVLLKEAIDRRIALPTAY 215 + D A I P Sbjct: 85 QYDLAIHSYSYGAIMDIKEPRFP 107 Score = 28.7 bits (64), Expect = 0.037 Identities = 12/77 (15%), Positives = 22/77 (28%), Gaps = 3/77 (3%) Query: 93 EKALRYFARAVAEEPQNPYYHLSLGETYLKVSEFTPAIRHIQQALDLKPDLVEALCALGD 152 E A + F + + + L LG + ++ AI + + Sbjct: 53 EDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIKEPRFPFHAAE 112 Query: 153 AY---NEFDKGELALPL 166 E + E L L Sbjct: 113 CLLQKGELAEAESGLFL 129
>PF07132#Harpin protein (HrpN) Length = 356 Score = 29.7 bits (66), Expect = 0.032 Identities = 33/132 (25%), Positives = 43/132 (32%), Gaps = 24/132 (18%) Query: 422 GMADMMKAMGGKGKGGGLMRGMMGGLASKMG------LGGMMPGGMGGMGGMPDLSKMDP 475 G+ + +GG GGGL G+ L S +G LGG + GM M + + Sbjct: 75 GLGSSLGGLGGGLLGGGLGGGLGSSLGSGLGSALGGGLGGALGAGMNAMNPSAMMGSLLF 134 Query: 476 KQLEAL----QKQAQAAGLGGMKGLPG--------------GLPGGGLPGLPGGMKLPGL 517 LE L Q Q G + + G GL G L Sbjct: 135 SALEDLLGGGMSQQQGGLFGNKQPSSPEISAYTQGVNDALSAILGNGLSQTKGQTSPLQL 194 Query: 518 PGLGGGGLPGLG 529 G GL G G Sbjct: 195 GNNGLQGLSGAG 206
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 27.2 bits (60), Expect = 0.016 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 1/65 (1%) Query: 48 VFTVAIGGR-AVSLELTAVHQIASSPRPGGGFTLLFKGPRDISLPQAIYHLAGDAITDDI 106 + +V I G L T+VHQ+ P P ++ P D+ PQA+ + + Sbjct: 19 LLSVCIHGAVVAGLLYTSVHQVIELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEP 78 Query: 107 FIVPV 111 P+ Sbjct: 79 EPEPI 83
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 42.2 bits (99), Expect = 1e-07 Identities = 32/122 (26%), Positives = 45/122 (36%), Gaps = 31/122 (25%) Query: 44 AHYIKHYPNADWLVIMRDGDD------------IGRLYIER-WPTQHRIIDIALLPTYRG 90 Y K Y + D V + + IGR+ I W I DIA+ YR Sbjct: 44 KPYFKQYEDDDMDVSYVEEEGKAAFLYYLENNCIGRIKIRSNWNGYALIEDIAVAKDYRK 103 Query: 91 RGLGAALLGDLIDEA--------WLAGKSVSIHVEKNNPARQLYARLGFAVAEDKGVYDL 142 +G+G ALL I+ A L + + N A YA+ F + G D Sbjct: 104 KGVGTALLHKAIEWAKENHFCGLMLETQDI------NISACHFYAKHHFII----GAVDT 153 Query: 143 MV 144 M+ Sbjct: 154 ML 155
>cloacin#Cloacin signature. Length = 551 Score = 37.8 bits (87), Expect = 0.001 Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 1/106 (0%) Query: 1254 NNTGTIGIGGTITNSGTGNGVVVSGGSAAITVSADISSSATAPGTAVKVDGITGGSVTFS 1313 +NTG G I N G V G S S++ + G+ + G +G Sbjct: 9 HNTGAHSTSGNI-NGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGG 67 Query: 1314 GLITSTGTGTGVSVSNTAAGSGVGFGAVTVSGAAGNGIGISGNAGS 1359 + G+GTG ++S AA GF A++ GA G + IS A S Sbjct: 68 NGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALS 113
>PF06776#Invasion associated locus B Length = 214 Score = 126 bits (317), Expect = 1e-38 Identities = 31/132 (23%), Positives = 53/132 (40%) Query: 63 PWAVNCSSGSTANELQCQVSQNLTEAKTGQRVLTVTVRRDNANGSFAMLLALPHGLFLPS 122 W + C + A QC + Q++ LTV + + S M + P G+ LPS Sbjct: 82 DWQIRCDTPPGAKAEQCALIQSVVAEDRSNAGLTVIILKTADQKSKLMRVVAPLGVLLPS 141 Query: 123 GVSYQIDSGKKVTVAIQTSDQNGAYAAVPVAPELAKAMKSGTTLNIGMESVTRKPVTIPV 182 G+ ++D+ NG A V + +L +++ T + + + P+ Sbjct: 142 GLGLKLDNVDVGRAGFVRCLPNGCVAEVVMDDKLLGQLRTAKTATFIIFETPEEGIGFPL 201 Query: 183 SLKGFGAAVAKL 194 SL G G KL Sbjct: 202 SLNGIGEGYDKL 213
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 32.0 bits (73), Expect = 0.004 Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 18/104 (17%) Query: 4 DLLLKGGRLIDPASGIDAPRDVAIANGRVAAI----------DADIPADRAEQIVDATGC 53 D ++ ++D + A D+ + +GR+AAI I +++ G Sbjct: 69 DTVITNALILDHWGIVKA--DIGLKDGRIAAIGKAGNPDMQPGVTIIVGPGTEVIAGEGK 126 Query: 54 IVAPGLVDLHSHVYWGGTSLGVDADRLAAKSGTTTFIDAGSAGA 97 IV G +D H H + A SG T + G+ A Sbjct: 127 IVTAGGMDSHIHF------ICPQQIEEALMSGLTCMLGGGTGPA 164
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 55.4 bits (133), Expect = 4e-11 Identities = 34/154 (22%), Positives = 60/154 (38%), Gaps = 5/154 (3%) Query: 69 ILANVQRLQEAARANHVPLQHWAYIVDLDKQDRPFHPLGADGKSAFSDKSDPLTEICHEV 128 + AN+++L+ +P+ + A + DR L D + +I E+ Sbjct: 56 LSANIRKLKNQCVQLGIPVVYTAQPGSQNPDDRA---LLTDFWGPGLNSGPYEEKIITEL 112 Query: 129 APARDEALLVKAEASAFRSGPAADQLKAAGIEWLVVAGVWTEACIDATVKDAVARGFRVL 188 AP D+ +L K SAF+ + ++ G + L++ G++ T +A + Sbjct: 113 APEDDDLVLTKWRYSAFKRTNLLEMMRKEGRDQLIITGIYAHIGCLVTACEAFMEDIKAF 172 Query: 189 LVKDACGSGSAAMHQTGILNLANRLYGGAVTDTD 222 V DA S HQ + A R TD Sbjct: 173 FVGDAVADFSLEKHQMALEYAAGR--CAFTVMTD 204
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 49.6 bits (118), Expect = 2e-09 Identities = 43/187 (22%), Positives = 67/187 (35%), Gaps = 17/187 (9%) Query: 9 EIPTSLVEWC-DPHRMALVVYDMQIGICRQVAGAA----DIVERTGIVLEAARSAGMRLA 63 ++P + V W DP+R L+++DMQ A ++ + G+ + Sbjct: 16 DMPQNKVSWVPDPNRAVLLIHDMQNYFVDAFTAGASPVTELSANIRKLKNQCVQLGIPVV 75 Query: 64 FTRHLSLPRKWMGATQLRTAMAWQRRDSPDAVEPWFLRDADATRIIPELAPRADEAVFDK 123 +T Q + R D P +II ELAP D+ V K Sbjct: 76 YT------------AQPGSQNPDDRALLTDFWGPGLNSGPYEEKIITELAPEDDDLVLTK 123 Query: 124 LTMSAFDSTALSFALRDCGVRAIALAGIAMEIGIEPTVRQATDNGFTAVVIEDACGFGNR 183 SAF T L +R G + + GI IG T +A A + DA + Sbjct: 124 WRYSAFKRTNLLEMMRKEGRDQLIITGIYAHIGCLVTACEAFMEDIKAFFVGDAVADFSL 183 Query: 184 EARDRSM 190 E ++ Sbjct: 184 EKHQMAL 190
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 70.3 bits (172), Expect = 2e-16 Identities = 51/240 (21%), Positives = 107/240 (44%), Gaps = 1/240 (0%) Query: 8 AIYRVEMARAFRTVLQSIISPVISTSLYFVVFGSAIGSRITEIDGISYGAFIVPGLIMLS 67 A++R + L S++ + +Y G+ +G + + G+SY AF+ G++ S Sbjct: 18 AVWRRNYIAWKKAALASLLGHLAEPLIYLFGLGAGLGVMVGRVGGVSYTAFLAAGMVATS 77 Query: 68 LLTQSISNASFAIYFPKFVGSIYE-LLSAPVSYLEIVIAYVGGAATKSIILGLIILATAS 126 +T + +A + +E +L + +IV+ + AATK+ + G I A+ Sbjct: 78 AMTAATFETIYAAFGRMEGQRTWEAMLYTQLRLGDIVLGEMAWAATKAALAGAGIGVVAA 137 Query: 127 LFVPLRIEHPFWMIAFLVLTAVTFSLFGFIIGIWARSFEQLQLVPLLIVTPLTFLGGSFY 186 + + + + LT + F+ G ++ A S++ L++TP+ FL G+ + Sbjct: 138 ALGYTQWLSLLYALPVIALTGLAFASLGMVVTALAPSYDYFIFYQTLVITPILFLSGAVF 197 Query: 187 SIHMLPGIWKTITLFNPVVYLISGFRWSFYGKADVSVGISLGMTLVFLAVCIAIVAWIFR 246 + LP +++T F P+ + I R G V V +G +++ + + + R Sbjct: 198 PVDQLPIVFQTAARFLPLSHSIDLIRPIMLGHPVVDVCQHVGALCIYIVIPFFLSTALLR 257
>SECBCHAPRONE#Bacterial protein-transport SecB chaperone protein signature. Length = 170 Score = 144 bits (365), Expect = 7e-47 Identities = 48/162 (29%), Positives = 86/162 (53%), Gaps = 5/162 (3%) Query: 4 NDDAPVGAANGNGNTGAQPSLNVLAQYVKDLSFESPGAPNSLRGRDKAPGIAINVNVNAN 63 +++ V AA+ QP L + YVKD+SFE+P P+ + +D P ++ +++ A Sbjct: 2 SEENQVNAADTQATQ--QPVLQIQRIYVKDVSFEAPNLPHIFQ-QDWEPKLSFDLSTEAK 58 Query: 64 PLSDKQFDVNLTLNAKASFDQE--VLFNVELVYGGVFAISGFPQEHMLPILFIECPRLLF 121 + D ++V L ++ + + + V F E+ GVF ISG + M L +CP +LF Sbjct: 59 QVGDDLYEVCLNISVETTMESSGDVAFICEVKQAGVFTISGLEEMQMAHCLTSQCPNMLF 118 Query: 122 PFARQIIAEATRNGGFPPLMLDPIDFAQMFQQKIAEDQAASK 163 P+AR++++ G FP L L P++F +F + + A + Sbjct: 119 PYARELVSSLVNRGTFPALNLSPVNFDALFMDYLQRQEQAEQ 160
>ENTEROTOXINA#Heat-labile enterotoxin A chain signature. Length = 258 Score = 28.8 bits (64), Expect = 0.030 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 7/54 (12%) Query: 217 LSELGEIPLAQVTMQSIRAWFKAHPQRIDEILWQNRSYI--FFREADVEDAALG 268 +S LG IP +Q I W++ + IDE L +NR Y ++R ++ A G Sbjct: 131 VSALGGIPYSQ-----IYGWYRVNFGVIDERLHRNREYRDRYYRNLNIAPAEDG 179
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.9 bits (64), Expect = 0.025 Identities = 12/32 (37%), Positives = 17/32 (53%) Query: 63 GKSGCGKSTLLRLLAGLDRPTSGSLTLGAEEE 94 G G GKSTL+ L GLD + +G ++ Sbjct: 603 GTGGIGKSTLINTLVGLDFFSDTHFDIGTGKD 634
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 28.8 bits (64), Expect = 0.031 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 2/74 (2%) Query: 241 AGFAPKILDTTIYDEIIKVSNEDSVANARLVARLEGVPVGISSGAALQAAIVVGSRPENK 300 AG+A ++D T +EI K N + +A LE G+ + +L A+++ SR N Sbjct: 922 AGYARTMIDATSANEITKQLN-TATTTLNNIASLEHKTSGLQT-LSLSNAMILNSRLVNL 979 Query: 301 GKTLVVVIPDFAER 314 + I FA+R Sbjct: 980 SRRHTNHIDSFAKR 993
>ECOLIPORIN#E.coli/Salmonella-type porin signature. Length = 383 Score = 28.0 bits (62), Expect = 0.014 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Query: 5 AILESALYVTDLA-AAEQFYVGVLGLDLLGKVDGRHLF 41 A++ AL A AAE + LDL GKVDG H F Sbjct: 7 ALVIPALLAAGAAHAAEIYNKDGNKLDLYGKVDGLHYF 44
>AEROLYSIN#Aerolysin signature. Length = 493 Score = 30.8 bits (69), Expect = 0.009 Identities = 13/41 (31%), Positives = 20/41 (48%) Query: 77 ITGMALMARAYNQAQKFGVEMVIPDEAKLLSAAADNTGARY 117 +TG++L+ AQ E V PD+ +L S G +Y Sbjct: 6 LTGLSLIISGLLMAQAQAAEPVYPDQLRLFSLGQGVCGDKY 46
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 70.4 bits (172), Expect = 2e-17 Identities = 38/210 (18%), Positives = 67/210 (31%), Gaps = 20/210 (9%) Query: 3 KPSNTADEILAAARTFIVAGGYNGFSYADIAEVVGIRKASIHHHFPSKVDLVQTLLKRYL 62 + T IL A G + S +IA+ G+ + +I+ HF K DL + + Sbjct: 8 EAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSE 67 Query: 63 EDAVIGLAGLERDVPG-PPELLRTYA-GIWARCIEDASMPFCVCALLASELPA--LPPQL 118 + + PG P +LR + + + + + + Sbjct: 68 SNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQ 127 Query: 119 AVEVRAYFQFLSGWLTGVIERGAEKGTLVISASPRIEAEAFMATVHGAMLS--------- 169 + R + ++ E L R A + G M + Sbjct: 128 QAQ-RNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQSFD 186 Query: 170 ----ARAYGDVLTFGMILTPTLQKLIPATD 195 AR Y +L +L PTL+ PAT+ Sbjct: 187 LKKEARDYVAILLEMYLLCPTLRN--PATN 214
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 32.9 bits (75), Expect = 0.002 Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 2/65 (3%) Query: 67 GGLRARPGEVSLAHHGVLFLDEFPEFTPQTLDALRQPLETGDCMIARANHRVTYPARIQL 126 G G A G LFLDE + L + L+ G+ R + +++ Sbjct: 218 GAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGE--YTTVGGRTPIRSDVRI 275 Query: 127 VAAMN 131 VAA N Sbjct: 276 VAATN 280
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 27.3 bits (60), Expect = 0.037 Identities = 16/69 (23%), Positives = 23/69 (33%), Gaps = 9/69 (13%) Query: 10 SPSADQPDVASQVPPNTQPPPSAPPVLASQPPTTGPSLFIPDARSGRIGHPRGAAPLKAL 69 +P+ +P A Q PP P P +PP P + I P+ K Sbjct: 51 TPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVV---------IEKPKPKPKPKPK 101 Query: 70 PEAKSENVA 78 P K + Sbjct: 102 PVKKVQEQP 110
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 54.8 bits (132), Expect = 4e-11 Identities = 25/117 (21%), Positives = 44/117 (37%), Gaps = 2/117 (1%) Query: 4 PRIKIVIADDHPIVRSGIRAVLEQRAEWWVCGEADNGETAVRLAREHAAKIVILDYSLPV 63 I++ADD +R+ + L + N T R +V+ D +P Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGY--DVRITSNAATLWRWIAAGDGDLVVTDVVMPD 59 Query: 64 LNGLEATRIIRRTMPETEVLIYTMHEDESLIRETLRAGARGYLLKIEDDSELVAAVA 120 N + I++ P+ VL+ + + GA YL K D +EL+ + Sbjct: 60 ENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116
>MECHCHANNEL#Bacterial mechano-sensitive ion channel signature. Length = 136 Score = 129 bits (325), Expect = 1e-41 Identities = 68/139 (48%), Positives = 91/139 (65%), Gaps = 9/139 (6%) Query: 6 MLKEFQEFISKGNVMDLAVGVIIGAAFGKIVDSLVNDIIMPIIGAIFGGLDFNNYFVGLS 65 ++KEF+EF +GNV+DLAVGVIIGAAFGKIV SLV DIIMP +G + GG+DF + V L Sbjct: 3 IIKEFREFAMRGNVVDLAVGVIIGAAFGKIVSSLVADIIMPPLGLLIGGIDFKQFAVTL- 61 Query: 66 SAVNATSLADARKQGAVLAYGSFITVALNFVILAFIIFLMVKAVNNLRKRLEREKPAAAA 125 A V+ YG FI +F+I+AF IF+ +K +N L + ++E+PAAA Sbjct: 62 ------RDAQGDIPAVVMHYGVFIQNVFDFLIVAFAIFMAIKLINKLNR--KKEEPAAAP 113 Query: 126 PPPADIALLTQIRDLLARK 144 P + LLT+IRDLL + Sbjct: 114 APTKEEVLLTEIRDLLKEQ 132
>MECHCHANNEL#Bacterial mechano-sensitive ion channel signature. Length = 136 Score = 129 bits (325), Expect = 1e-41 Identities = 69/138 (50%), Positives = 88/138 (63%), Gaps = 10/138 (7%) Query: 1 MLKEFQEFISKGNVMDLAVGVIIGAAFGKIVDSLVNDIIMPVIGAIFGGLDFNNYFVGLS 60 ++KEF+EF +GNV+DLAVGVIIGAAFGKIV SLV DIIMP +G + GG+DF + V L Sbjct: 3 IIKEFREFAMRGNVVDLAVGVIIGAAFGKIVSSLVADIIMPPLGLLIGGIDFKQFAVTL- 61 Query: 61 SAVNATSLADAKKQGAVFAYGSFITVALNFVILAFIIFLMVKAVNNLRRRLEREKPATPA 120 A V YG FI +F+I+AF IF+ +K +N L R ++E+PA Sbjct: 62 ------RDAQGDIPAVVMHYGVFIQNVFDFLIVAFAIFMAIKLINKLNR--KKEEPAAAP 113 Query: 121 APPPADVALLTEIRDLLA 138 A P + LLTEIRDLL Sbjct: 114 A-PTKEEVLLTEIRDLLK 130
>BCTLIPOCALIN#Bacterial lipocalin signature. Length = 171 Score = 92.8 bits (230), Expect = 3e-26 Identities = 51/153 (33%), Positives = 82/153 (53%), Gaps = 11/153 (7%) Query: 18 AVTAITSLNLSRYLGKWYELCRLPIKYEDETATDITANYSLNDSVTVRVDNRCFD-KHGK 76 +V ++ L+ YLGKWYE+ RL +E + +TA Y + + + V NR + + G+ Sbjct: 22 SVKPVSDFELNNYLGKWYEVARLDHSFE-RGLSQVTAEYRVRNDGGISVLNRGYSEEKGE 80 Query: 77 PFRAIGEATPVDD-ARSRLKVTFLPKYIRWIPFTSGDYWVLKLDPE-YKVSLVGSPDRQY 134 A G+A V+ LKV+F PF G Y V +LD E Y + V P+ +Y Sbjct: 81 WKEAEGKAYFVNGSTDGYLKVSFFG------PFY-GSYVVFELDRENYSYAFVSGPNTEY 133 Query: 135 LWLLARSPDLAQDTRERYLAEAKRQGFDLTNLI 167 LWLL+R+P + + ++++ +K +GFD LI Sbjct: 134 LWLLSRTPTVERGILDKFIEMSKERGFDTNRLI 166
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 1100 bits (2848), Expect = 0.0 Identities = 498/568 (87%), Positives = 536/568 (94%), Gaps = 1/568 (0%) Query: 3 RISRAAYAQMYGPTVGDKVRLADTELFIEVEKDLTIHGEEVKFGGGKVIRDGMGQSQVSR 62 R+SRAAYA M+GPTVGDKVRLADTELFIEVEKD T HGEEVKFGGGKVIRDGMGQSQV+R Sbjct: 4 RMSRAAYANMFGPTVGDKVRLADTELFIEVEKDFTTHGEEVKFGGGKVIRDGMGQSQVTR 63 Query: 63 AQGAVDTVITNALVVDAGAGIFKADIGLKDGRIAAIGKAGNPDTQDGVTIIIGPGTEIIA 122 GAVDTVITNAL++D GI KADIGLKDGRIAAIGKAGNPD Q GVTII+GPGTE+IA Sbjct: 64 EGGAVDTVITNALILDH-WGIVKADIGLKDGRIAAIGKAGNPDMQPGVTIIVGPGTEVIA 122 Query: 123 GEGKILTAGGFDAHIHFICPQQIEEALMSGITTMLGGGTGPAHGTLATTCTPGPWHMARM 182 GEGKI+TAGG D+HIHFICPQQIEEALMSG+T MLGGGTGPAHGTLATTCTPGPWH+ARM Sbjct: 123 GEGKIVTAGGMDSHIHFICPQQIEEALMSGLTCMLGGGTGPAHGTLATTCTPGPWHIARM 182 Query: 183 IQSFDAFPMNIGLSGKGNASLPAALEEMVLGGACSLKLHEDWGTTPAAIDCCLSVADDYD 242 I++ DAFPMN+ +GKGNASLP AL EMVLGGA SLKLHEDWGTTPAAIDCCLSVAD+YD Sbjct: 183 IEAADAFPMNLAFAGKGNASLPGALVEMVLGGATSLKLHEDWGTTPAAIDCCLSVADEYD 242 Query: 243 VQVMIHTDTLNESGFVENTVAAIKGRTIHAFHTEGAGGGHAPDIIKVCGLPNVIPSSTNP 302 VQVMIHTDTLNESGFVE+T+AAIKGRTIHA+HTEGAGGGHAPDII++CG PNVIPSSTNP Sbjct: 243 VQVMIHTDTLNESGFVEDTIAAIKGRTIHAYHTEGAGGGHAPDIIRICGQPNVIPSSTNP 302 Query: 303 TRPYTVNTLAEHLDMLMVCHHLSPSIPEDIAFAESRIRKETIAAEDILHDIGAFSIISSD 362 TRPYTVNTLAEHLDMLMVCHHLSP+IPEDIAFAESRIRKETIAAEDILHDIGAFSIISSD Sbjct: 303 TRPYTVNTLAEHLDMLMVCHHLSPTIPEDIAFAESRIRKETIAAEDILHDIGAFSIISSD 362 Query: 363 SQAMGRVGEVAIRTWQTADKMKRQRGALPQETGDNDNFRVRRYIAKYTINPAIAHGLSKD 422 SQAMGRVGEVAIRTWQTADKMKRQRG L +ETGDNDNFRV+RYIAKYTINPAIAHGLS + Sbjct: 363 SQAMGRVGEVAIRTWQTADKMKRQRGRLKEETGDNDNFRVKRYIAKYTINPAIAHGLSHE 422 Query: 423 IGSIAVGKRADLVLWNPAFFGVKPDMVLVGGMIAAAPMGDPNASIPTPQPMHYRPMFGAY 482 IGS+ VGKRADLVLWNPAFFGVKPDMVL+GG IAAAPMGDPNASIPTPQP+HYRPMFGAY Sbjct: 423 IGSLEVGKRADLVLWNPAFFGVKPDMVLLGGTIAAAPMGDPNASIPTPQPVHYRPMFGAY 482 Query: 483 GKARTNSSVTFVSKAALESGLHGRLGVEKQFVAVENTRGGIGKHSMVLNDATPHVEVDPE 542 G++RTNSSVTFVS+A+L++GL GRLGV K+ VAV+NTRGGIGK SM+ N TPH+EVDPE Sbjct: 483 GRSRTNSSVTFVSQASLDAGLAGRLGVAKELVAVQNTRGGIGKASMIHNSLTPHIEVDPE 542 Query: 543 TYEVRADGELLTCEPATVLPMAQRYFLF 570 TYEVRADGELLTCEPATVLPMAQRYFLF Sbjct: 543 TYEVRADGELLTCEPATVLPMAQRYFLF 570
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.4 bits (68), Expect = 0.002 Identities = 19/115 (16%), Positives = 29/115 (25%), Gaps = 5/115 (4%) Query: 20 LAGAASAQQQPAPATPAPKATTPAAG-----GQQAAPAIQSVNIVDITELPKDTQTQVNQ 74 +Q T P T + SV P TQ VN Sbjct: 1154 NIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNS 1213 Query: 75 VIAQRGDAGLQKLRSSIDATPKVKSALQAKGMTSAQVVAASMEPNGALTLITKKA 129 + + ++ S+ + + T A S N L+ KA Sbjct: 1214 ESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTNAVLSDARAKA 1268
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 104 bits (260), Expect = 6e-29 Identities = 73/242 (30%), Positives = 114/242 (47%), Gaps = 11/242 (4%) Query: 13 AIVTGGAQGIGFAVAEALADEGCRALALIGRSQEKGDKAVAHFKKAGVDAIFISADVSKV 72 A +TG AQGIG AVA LA +G A + + EK +K V+ K A ADV Sbjct: 11 AFITGAAQGIGEAVARTLASQGAHIAA-VDYNPEKLEKVVSSLKAEARHAEAFPADVRDS 69 Query: 73 ADCKRAVATALAHFGTLNALVNAAATSARGSLVETSEELFDQIFATNVRGPFFLMQGLVA 132 A A G ++ LVN A G + S+E ++ F+ N G F + + Sbjct: 70 AAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSK 129 Query: 133 HLLERKAPGSIVNVLSMSAHCGQSFLTPYSTSKGALMTLTKNVANAYRFDRIRCNAVLPG 192 ++++R++ GSIV V S A ++ + Y++SK A + TK + IRCN V PG Sbjct: 130 YMMDRRS-GSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPG 188 Query: 193 WMDTEGEDIVQKKW-HDAPDDWLAKAEAAQ-----PMGQLVKPDQLARLISYMVSPQSGV 246 +T D+ W + + + K P+ +L KP +A + ++VS Q+G Sbjct: 189 STET---DMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGH 245 Query: 247 MT 248 +T Sbjct: 246 IT 247
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 31.0 bits (70), Expect = 0.007 Identities = 11/42 (26%), Positives = 20/42 (47%) Query: 222 DESAIGAIQAMKAANIDMKSVVVGGVDATQDALAAMQAGDLD 263 DE+A + +K A D+ +V+ + A+ A + G D Sbjct: 59 DENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYD 100
>PF06580#Sensor histidine kinase Length = 349 Score = 35.6 bits (82), Expect = 3e-04 Identities = 11/115 (9%), Positives = 38/115 (33%), Gaps = 21/115 (18%) Query: 107 IRDLVEIAIGLVREKMREDVKARAHINAEERVLEALVGK-TASP----ATRDSFRKKLRD 161 + +++ ++ + + + +++ V + + + Sbjct: 225 VDSYLQL------ASIQFEDRLQFENQINPAIMDVQVPPMLVQTLVENGIKHGIAQLPQG 278 Query: 162 GEL------DDKEIEIEVADTGNGGMPGFEIPGMPGANIGVLNINDMLSKAMGGK 210 G++ D+ + +EV +TG+ + G+ N+ + L G + Sbjct: 279 GKILLKGTKDNGTVTLEVENTGSLALKN----TKESTGTGLQNVRERLQMLYGTE 329
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 108 bits (272), Expect = 6e-31 Identities = 74/251 (29%), Positives = 111/251 (44%), Gaps = 14/251 (5%) Query: 4 LNGKTAVITGGATGIGRAAATRFIEEGAFVFIYGRRQEALDAAVADLGANAR---AVKGS 60 + GK A ITG A GIG A A +GA + E L+ V+ L A AR A Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 61 VSDLADLDRLYAAVKAERGTLDIVFANAGAGGPLPLGQITAEHIDETFDTNVKGTIFTVQ 120 V D A +D + A ++ E G +DI+ AG P + ++ E + TF N G + Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 121 QALPLMGP--GGSIILTGSSAGTTGAPGFTAYSASKAAVRNLARTWAEDLKGTGIRVNVL 178 M GSI+ GS+ AY++SKAA + +L IR N++ Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 179 SPGATATELAKEALGEEGQKA---------YGAMTPLQRMADPAEIGAVAAFLASSDSSF 229 SPG+T T++ +E + PL+++A P++I FL S + Sbjct: 186 SPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGH 245 Query: 230 MTASEVAVDGG 240 +T + VDGG Sbjct: 246 ITMHNLCVDGG 256
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 124 bits (313), Expect = 8e-37 Identities = 80/256 (31%), Positives = 125/256 (48%), Gaps = 14/256 (5%) Query: 2 KKLEGKIAVITGGSSGIGLATAKRFVEEGAHVV---ITGRREKELKEAAAFIMRNVTTVV 58 K +EGKIA ITG + GIG A A+ +GAH+ + +++ + R+ Sbjct: 4 KGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFP 63 Query: 59 GDVSLLEDLDRLYAVVKEKHGHIDVLFANAGAGTIAPLAAATEAHFDQTFDVNVKGLFFT 118 DV +D + A ++ + G ID+L AG + + ++ ++ TF VN G+F Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 119 VQKALPLFKD--GGSIILNSSVSNVLGLP--GFSTYAASKAAVRNFSRAWTLELKDRKIR 174 + D GSI+ S N G+P + YA+SKAA F++ LEL + IR Sbjct: 124 SRSVSKYMMDRRSGSIVTVGS--NPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIR 181 Query: 175 VNTMSPGAIETPALETTTGLTPEQAEQAVAQFASQ----IPMGRRGKPEEIAAAVTFLAS 230 N +SPG+ ET ++ + AEQ + IP+ + KP +IA AV FL S Sbjct: 182 CNIVSPGSTET-DMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVS 240 Query: 231 DDSSYVTGVDLAVDGG 246 + ++T +L VDGG Sbjct: 241 GQAGHITMHNLCVDGG 256
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 428 bits (1102), Expect = e-147 Identities = 192/540 (35%), Positives = 290/540 (53%), Gaps = 17/540 (3%) Query: 5 RIEGVPASAGYAEGPLFDLDRPPAVYAGKAT--LAEEKTSLQAAIGTAVSRLSAMAEAAD 62 +I G+ AS+G A F P + ++ E L AA+ + L A+ + + Sbjct: 4 KITGIAASSGVAIAKAFIHLEPNVDIEKTSITDVSTEIEKLTAALEKSKEELRAIKDQTE 63 Query: 63 S----DAAGILEFHIAMLEDDALRGPAFASI-TSGQTADVAWREALDAEIAGYEASDQDY 117 + D A I H+ +L+D L I A+ A +E D ++ +E+ D +Y Sbjct: 64 ASMGADKAEIFAAHLLVLDDPELVDGIKGKIENEQMNAEYALKEVSDMFVSMFESMDNEY 123 Query: 118 FRARATDLRDIRDQVLRALTEDVDSAAPT---GAILCGEDIAPTRFLETDWSHGGGIALK 174 + RA D+RD+ +VL L + T ++ ED+ P+ + + G A Sbjct: 124 MKERAADIRDVSKRVLGHLIGVETGSLATIAEETVIIAEDLTPSDTAQLNKQFVKGFATD 183 Query: 175 AGSTASHVAMLARSRGVPMVVGLREMSASPAG--MALLDAEHGSIVLAPSPAEIGAFRQS 232 G SH A+++RS +P VVG +E++ M ++D G +++ P+ E+ A+ + Sbjct: 184 IGGRTSHSAIMSRSLEIPAVVGTKEVTEKIQHGDMVIVDGIEGIVIVNPTEEEVKAYEEK 243 Query: 233 SASFAARQGKAQRFLARPAVTKAGTAVRVQVNIADPSDVDGIDVATCDGVGLMRTEFLF- 291 A+F ++ + + + P+ TK G V + NI P DVDG+ +G+GL RTEFL+ Sbjct: 244 RAAFEKQKQEWAKLVGEPSTTKDGAHVELAANIGTPKDVDGVLANGGEGIGLYRTEFLYM 303 Query: 292 -GKNLPDEETQYRAYRKVLEWAGEKPVTIRTVDAGGDKPVPGFTV-EEGNPFLGLRGIRL 349 LP EE Q+ AY++V++ KPV IRT+D GGDK + + +E NPFLG R IRL Sbjct: 304 DRDQLPTEEEQFEAYKEVVQRMDGKPVVIRTLDIGGDKELSYLQLPKELNPFLGFRAIRL 363 Query: 350 SLARLDIFRIQIRALLRAAPHGNLRVMFPMIAMADEYERAAALFAEEQAALAAGGVAQKM 409 L + DIFR Q+RALLRA+ +GNL+VMFPMIA +E +A A+ EE+ L + GV Sbjct: 364 CLEKQDIFRTQLRALLRASTYGNLKVMFPMIATLEELRQAKAIMQEEKDKLLSEGVDVSD 423 Query: 410 P-PLGIMVEVPSVAIAPEAFAG-VAFFSIGSNDLTQYVMAAARDNAAVAHFNSVRHPAVL 467 +GIMVE+PS A+A FA V FFSIG+NDL QY MAA R N V++ HPA+L Sbjct: 424 SIEVGIMVEIPSTAVAANLFAKEVDFFSIGTNDLIQYTMAADRMNERVSYLYQPYHPAIL 483 Query: 468 RLIGSVAAFGRENGIPVSLCGDAGGDPAAIPSLLEAGLRDLSVAPAQLAMAKAAIADVSV 527 RL+ V G V +CG+ GD AIP LL GL + S++ + A++ + +S Sbjct: 484 RLVDMVIKAAHSEGKWVGMCGEMAGDEVAIPLLLGLGLDEFSMSATSILPARSQLLKLSK 543
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 36.8 bits (85), Expect = 6e-04 Identities = 41/185 (22%), Positives = 72/185 (38%), Gaps = 9/185 (4%) Query: 18 LFWTQFLSAFNDNFLKNTLVFLILFTLAADQAAS--LVTLAGAVFMAPFLLLSALGGEIA 75 L W LS F+ L ++ + L +A D FM F + +A+ G+++ Sbjct: 16 LIWLCILSFFS--VLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLS 73 Query: 76 DRFDKALIARRLKFAEIAAAAVSVAG-IALSSIPVLMTALLMFGIISALFGPIKYGILPD 134 D+ I R L F I SV G + S +L+ A + G +A F + ++ Sbjct: 74 DQLG---IKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVAR 130 Query: 135 HLERKELPKANAWIESATFAAILGGTIAGGVVSADGIGVTVFGPIMMALAVGCWFVSRYI 194 ++ ++ KA I S G GG++ A I + I M + F+ + + Sbjct: 131 YIPKENRGKAFGLIGSIVAMGEGVGPAIGGMI-AHYIHWSYLLLIPMITIITVPFLMKLL 189 Query: 195 PPTGS 199 Sbjct: 190 KKEVR 194
>SECA#SecA protein signature. Length = 901 Score = 29.8 bits (67), Expect = 0.030 Identities = 9/14 (64%), Positives = 10/14 (71%) Query: 280 GREGRLGEPGSSVF 293 GR GR G+ GSS F Sbjct: 573 GRSGRQGDAGSSRF 586
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 32.1 bits (73), Expect = 7e-04 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 3/54 (5%) Query: 115 ADRYVVRRRRQRFWWLGLGLAGIGLAGAVAGLALVTVVTPDVQPDHYVLDANAT 168 D+ R ++ W+ +AG+ A A AG+ V +TP + YV+ + Sbjct: 22 RDKLAAAERSKKLAWV---VAGVAGALATAGVVAVAALTPLKTVEPYVITVDRN 72
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 24.4 bits (53), Expect = 0.033 Identities = 6/18 (33%), Positives = 14/18 (77%) Query: 14 EAAAILGMSKPTFWRRVR 31 +AA +LG+++ T +++R Sbjct: 454 KAADLLGLNRNTLRKKIR 471
>BCTERIALGSPC#Bacterial general secretion pathway protein C signature. Length = 272 Score = 27.2 bits (60), Expect = 0.030 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 10/60 (16%) Query: 52 NPERDALYLNVTPSKNDGKTV-YRLAVKDVPVDAFWSISLYNAEGHFQKNDLNAYSLNSI 110 + Y++ +P ND K YRL D+F+ + L Q ND+ A +LN + Sbjct: 180 ASTTMSDYVSFSPIMNDNKLQGYRLNPGPKS-DSFYRVGL-------QDNDM-AVALNGL 230
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 68.7 bits (168), Expect = 1e-16 Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 13/126 (10%) Query: 9 TIVMIEDDEGHARLIEKNIRRAGVNNDVVAFTNGSSALAYLLGPDGSGDASVGRHLLVLL 68 TI++ +DD ++ + + RAG DV +N ++ ++ G GD LV+ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGY--DVRITSNAATLWRWIA--AGDGD-------LVVT 53 Query: 69 DLNLPDMTGLDILQQIKANQHLKRIPVVVLTTTDDSREIQRCYDLGANVYITKPVNYEGF 128 D+ +PD D+L +IK +PV+V++ + + + GA Y+ KP + Sbjct: 54 DVVMPDENAFDLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTEL 111 Query: 129 ANAIRQ 134 I + Sbjct: 112 IGIIGR 117
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 88.3 bits (219), Expect = 2e-21 Identities = 32/164 (19%), Positives = 65/164 (39%), Gaps = 2/164 (1%) Query: 1 MPETRVLYIDDDDALARLVQKKLGRLGFVVEHASSPEQALTRLEEGGFDVLALDHYLGAG 60 M +L DDD A+ ++ + L R G+ V S+ + G D++ D + Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 61 TGLEFLARLATRGAAPPAVYVTGSSEMSVAVAALKAGASDFVPKTIG-DDFIALLASALD 119 + L R+ P + ++ + A+ A + GA D++PK + I ++ AL Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 120 QAVAKARLVAEKEAAEAQVRAARDRAELLLAEVNHRVANSLAMV 163 + + E ++ + R A + V R+ + + Sbjct: 121 EPKRRPS-KLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTL 163
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 30.1 bits (68), Expect = 0.012 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 15/64 (23%) Query: 250 SRPFEMNPFLRFIGQRLAQLKPHL---QRRVEMRVALHKHPGVAGIVEAATESLKMIPGI 306 P E+NPFL F RL K + Q R +R + + + V M P I Sbjct: 347 QLPKELNPFLGFRAIRLCLEKQDIFRTQLRALLRASTYGNLKV------------MFPMI 394 Query: 307 SLVD 310 + ++ Sbjct: 395 ATLE 398
>BCTLIPOCALIN#Bacterial lipocalin signature. Length = 171 Score = 92.0 bits (228), Expect = 5e-26 Identities = 50/153 (32%), Positives = 80/153 (52%), Gaps = 11/153 (7%) Query: 18 AVTAITSLNLSQYLGKWYELCRLPIKYEDETATDITANYSLNDSVTVRVDNRCFD-KHGK 76 +V ++ L+ YLGKWYE+ RL +E + +TA Y + + + V NR + + G+ Sbjct: 22 SVKPVSDFELNNYLGKWYEVARLDHSFE-RGLSQVTAEYRVRNDGGISVLNRGYSEEKGE 80 Query: 77 PSRAIGEAT-PADDARSRLKVTFLPKYIRWIPFTSGDYWVLKLDPE-YKVSLVGSPDRQY 134 A G+A LKV+F PF G Y V +LD E Y + V P+ +Y Sbjct: 81 WKEAEGKAYFVNGSTDGYLKVSFFG------PFY-GSYVVFELDRENYSYAFVSGPNTEY 133 Query: 135 LWLLARSPDLAQDTRERYLAEAKRQGFDLTNLI 167 LWLL+R+P + + ++++ +K +GFD LI Sbjct: 134 LWLLSRTPTVERGILDKFIEMSKERGFDTNRLI 166
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 113 bits (284), Expect = 2e-32 Identities = 77/255 (30%), Positives = 119/255 (46%), Gaps = 16/255 (6%) Query: 3 LKGKAVVISGAASPRGIGRSTATLMAEQGARIAILDLDEEQARDAAASLGPEHI---GLA 59 ++GK I+GAA +GIG + A +A QGA IA +D + E+ +SL E Sbjct: 6 IEGKIAFITGAA--QGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFP 63 Query: 60 CNVADLDSCKRAAAEVTEAFGRVEVLCNIAGITQPVKTLDIGPADWDRILDVNLRGVLYL 119 +V D + A + G +++L N+AG+ +P + +W+ VN GV Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 120 SQAFIPHMRENGGGSIICMSSVSAQRGGGIFGGPHYSAAKAGVLGLAKAMAREFGPDGIR 179 S++ +M + GSI+ + S A G Y+++KA + K + E IR Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPA--GVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIR 181 Query: 180 INCVTPGLIQTDITGGKLTDAM-RADIIK--------GIPLSRLGDARDVAGAYLFLASD 230 N V+PG +TD+ D +IK GIPL +L D+A A LFL S Sbjct: 182 CNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSG 241 Query: 231 LASYITGAVIDVNGG 245 A +IT + V+GG Sbjct: 242 QAGHITMHNLCVDGG 256
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 30.9 bits (70), Expect = 0.010 Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 4/81 (4%) Query: 282 ELLGPGDVRIAISSGTILGLAGAPAGPTGLIAPLVGAGLGAGWRLSGEGFADRFS--SPA 339 E +G GD ++ + G LG P L++ LVGA +G G L + P Sbjct: 209 EGMGYGDFKLLAALGAWLGWQALPI--VLLLSSLVGAFMGIGLILLRNHHQSKPIPFGPY 266 Query: 340 AAARAGIGFVSGDRATKGILS 360 A I + GD T+ L+ Sbjct: 267 LAIAGWIALLWGDSITRWYLT 287
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 76.0 bits (187), Expect = 3e-18 Identities = 33/140 (23%), Positives = 58/140 (41%) Query: 2 IKVLVVEDDADTADEIVDEFCAAGFEVERAATGPDGLTKAKTQAFDVITLDRLLPGLDGL 61 +LV +DDA + AG++V + D++ D ++P + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 62 SLLENLRGGGVDTPVMVLSALSSVDERIRGLRAGGDDYLVKPFSLAELRTRIEVLARRTP 121 LL ++ D PV+V+SA ++ I+ G DYL KPF L EL I Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 122 DQRATVLRLADLELDLLTRT 141 + + + + + L+ R+ Sbjct: 124 RRPSKLEDDSQDGMPLVGRS 143
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 745 bits (1924), Expect = 0.0 Identities = 295/1031 (28%), Positives = 498/1031 (48%), Gaps = 29/1031 (2%) Query: 3 VSNIFVQRPIATGLLTLGIVLVGMVAYMLLPISSLPQVDFPTIAVESTLPGAKAETMAST 62 ++N F++RPI +L + +++ G +A + LP++ P + P ++V + PGA A+T+ T Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 63 VASPLEQQFSTIPGLAQMTSTST-LGKTDMTLQFDLSRNIDSAAQDVQAAINAASGSLPK 121 V +EQ + I L M+STS G +TL F + D A VQ + A+ LP+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 122 AMQSPP-TYHKVNPALFTVISIVLQSDTIPLPLVMDAASNMVAQTLSQIPGAGFVDMPGS 180 +Q + K + + V V + + D ++ V TLS++ G G V + G+ Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 181 SKSAIRIQLDPMKLASLGMSLEDVRSALVVGTTNGPKGTL------EGAQRSVTLDANNQ 234 A+RI LD L ++ DV + L V G L G Q + ++ A + Sbjct: 181 QY-AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 235 LLTSADASAAII-AYRNGSPIRISDIGRAIDSVENTTLGAWYNNRKAVLIDVHLQSGANA 293 + + +GS +R+ D+ R EN + A N + A + + L +GANA Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 294 VDVVNGVKAALPGLRLRLPPSVQIMTAGDSTVAVRAAVADVQFTLMITIGLVVLTIFLFL 353 +D +KA L L+ P ++++ D+T V+ ++ +V TL I LV L ++LFL Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 354 KSMSATIIPAVTIPVSLIGTFGVMYLLGYSLDNISLMGLTIAVGFVVDDAIVVIENIVRH 413 ++M AT+IP + +PV L+GTF ++ GYS++ +++ G+ +A+G +VDDAIVV+EN+ R Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 414 I-EGGESPLEATLKGASEIGFTVVSMTASLIAVFIPLLLMSSMVGRLFREFSVTIAVALI 472 + E P EAT K S+I +V + L AVFIP+ G ++R+FS+TI A+ Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 473 ISALVSLTLTPMMCALMIKGH--GHEAKPNRLSSLLERGFDFIQRGYSRSLRVVVGHPRL 530 +S LV+L LTP +CA ++K H FD Y+ S+ ++G Sbjct: 480 LSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539 Query: 531 VLLCFFATLAVTAELFLAIPKGFFPQQDLGLISGSTQAAQDISFQAMAAKQQAVVDLILK 590 LL + +A LFL +P F P++D G+ Q + + V D LK Sbjct: 540 YLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLK 599 Query: 591 DPAVD----TVRSTLGGSGRM-NSGNLQIVLKPLSERSV---SADQVIARLRKETAGVSG 642 + + + SG+ N+G + LKP ER+ SA+ VI R + E + Sbjct: 600 NEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRD 659 Query: 643 VSVGMQAVQGINVGARGSQTQFQYTLQD---PNLPELYRWADTMTAELRKLP-QVRDVAN 698 V + G+ T F + L D L + + + + P + V Sbjct: 660 GFV--IPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRP 717 Query: 699 DLQAVAPHASIAVDRDTASRLGITPQAIDDTLYDAFGQRQVTTIFTQADQHKIVMEIDPK 758 + + VD++ A LG++ I+ T+ A G V + K+ ++ D K Sbjct: 718 NGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAK 777 Query: 759 YRVDAGALDAIYVGSNSGKQVPLSAFAKVSSSVAPLTINHQGLFPSVTLSFNLAPNVALG 818 +R+ +D +YV S +G+ VP SAF + PS+ + AP + G Sbjct: 778 FRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSG 837 Query: 819 DAVTAVEAMQARIRMSATVQTGFQGTAQAFQASLSTQPMLIVAALIAVYIVLGMLYESVI 878 DA+ +E + ++ + A + + G + + S + P L+ + + V++ L LYES Sbjct: 838 DAMALMENLASK--LPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWS 895 Query: 879 HPITILSTLPSAGVGALATLMLVGGQLDVMGLVGIILLIGIVKKNAIMMIDFALSAERDR 938 P++++ +P VG L L + DV +VG++ IG+ KNAI++++FA Sbjct: 896 IPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKE 955 Query: 939 GLPPKEAIIQACILRFRPITMTTLCALLGALPLALGTGVGSELRRPLGIAIVGGLCVSQL 998 G EA + A +R RPI MT+L +LG LPLA+ G GS + +GI ++GG+ + L Sbjct: 956 GKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATL 1015 Query: 999 LTLYTTPVIYL 1009 L ++ PV ++ Sbjct: 1016 LAIFFVPVFFV 1026 Score = 86.0 bits (213), Expect = 4e-19 Identities = 78/503 (15%), Positives = 167/503 (33%), Gaps = 25/503 (4%) Query: 5 NIFVQRPIATGLLTLGIVLVGMVAYMLLPISSLPQVDFPTIAVESTLP-GAKAETMASTV 63 + L+ IV +V ++ LP S LP+ D LP GA E + Sbjct: 531 GKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVL 590 Query: 64 A----------SPLEQQFSTIPGLAQMTSTSTLGKTDMTLQ-FDLSRNIDSAAQDVQAAI 112 + T+ G + G ++L+ ++ +++A+ V Sbjct: 591 DQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRA 650 Query: 113 NAASGSLPKAMQSPPTYHKVN-PALFTVISIVLQSDTIPLPLVMDAASNMVAQTLSQIPG 171 G + P + T L + A N + +Q P Sbjct: 651 KMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPA 710 Query: 172 AGFVDMPGSSKSA--IRIQLDPMKLASLGMSLEDVRSALVVGTTNGPKGTL--EGAQRSV 227 + P + ++++D K +LG+SL D+ + G + + Sbjct: 711 SLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKL 770 Query: 228 TLDANNQLLTSADASAAI-IAYRNGSPIRISDIGRAIDSVENTTLGAWYNNRKAVLIDVH 286 + A+ + + + + NG + S + + L R L + Sbjct: 771 YVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRL-----ERYNGLPSME 825 Query: 287 LQSGANAVDVVNGVKAALPGLRLRLPPSVQIMTAGDSTVAVRAAVADVQFTLMITIGLVV 346 +Q A A + L +LP + G S + + I+ +V Sbjct: 826 IQGEAAPGTSSGDAMALMENLASKLPAGIGYDWTGMSYQERLSG-NQAPALVAISFVVVF 884 Query: 347 LTIFLFLKSMSATIIPAVTIPVSLIGTFGVMYLLGYSLDNISLMGLTIAVGFVVDDAIVV 406 L + +S S + + +P+ ++G L D ++GL +G +AI++ Sbjct: 885 LCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILI 944 Query: 407 IENIV-RHIEGGESPLEATLKGASEIGFTVVSMTASLIAVFIPLLLMSSMVGRLFREFSV 465 +E + G+ +EATL ++ + + I +PL + + + Sbjct: 945 VEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGI 1004 Query: 466 TIAVALIISALVSLTLTPMMCAL 488 + ++ + L+++ P+ + Sbjct: 1005 GVMGGMVSATLLAIFFVPVFFVV 1027
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 47.5 bits (113), Expect = 7e-08 Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 8/89 (8%) Query: 75 AQLGNVPIWVTGLGTVQPF-NSVTVKPRANGQINDIVFTEGQMVHAHDVLARLDPKPFLG 133 + LG V I T G + S +KP N + +I+ EG+ V DVL +L Sbjct: 75 SVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTAL---- 130 Query: 134 PLHQAEATLAKDQAQLTNAQADLQRVSSL 162 AEA K Q+ L A+ + R L Sbjct: 131 ---GAEADTLKTQSSLLQARLEQTRYQIL 156 Score = 32.9 bits (75), Expect = 0.002 Identities = 36/195 (18%), Positives = 79/195 (40%), Gaps = 24/195 (12%) Query: 135 LHQAEATLAKDQAQLTNAQADLQRVSSLAQKGFATGQVLDTQKAQIAQTEATILADKAAI 194 L ++ L + ++++ +A+ + Q V+ L + ++LD ++ QT I + Sbjct: 268 LRVYKSQLEQIESEILSAKEEYQLVTQLFKN-----EILD----KLRQTTDNIGLLTLEL 318 Query: 195 ENAQTQIDYTTITSPIDG-VAGIRMIDAGNMITSTDLGIVTINQLEPISVVFTVPADAVA 253 + + + I +P+ V +++ G ++T+ + +V + + + + V V + Sbjct: 319 AKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIG 378 Query: 254 DWPVGTPASAISVTALAANDSRMLD-TGTLSLV--DNHIDPAT-----ATIKLK---ATF 302 VG A I V A +R G + + D D I ++ + Sbjct: 379 FINVGQNAI-IKVEAF--PYTRYGYLVGKVKNINLDAIEDQRLGLVFNVIISIEENCLST 435 Query: 303 PNKDHQLKPGQFVSA 317 NK+ L G V+A Sbjct: 436 GNKNIPLSSGMAVTA 450
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 29.6 bits (66), Expect = 0.025 Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 21/115 (18%) Query: 190 QVLRSLGASVVAVGKTATFVPVDTEAVDAATIAKLKKWVREFGLDA--------IVS--- 238 ++ S+V VG VP + A A++ A + + GL+ IVS Sbjct: 130 YMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPGS 189 Query: 239 TDADADRPLIADENGD--LLRGDLVGLATALFLK--------ADTIVTPVTSNSG 283 T+ D L ADENG +++G L T + LK AD ++ V+ +G Sbjct: 190 TETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAG 244
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 444 bits (1143), Expect = e-153 Identities = 133/384 (34%), Positives = 201/384 (52%), Gaps = 16/384 (4%) Query: 222 MAEKIRMQKQFGELKQPGHEGKRAHVKGIIGDSPALRGLLEKVALVARSNSTVLLRGESG 281 + I + + E ++G S A++ + +A + +++ T+++ GESG Sbjct: 111 LIGIIGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESG 170 Query: 282 TGKELVAKAVHEMSGRAKRPFIKLNCAALPETVLESELFGHEKGAFTSAFNSRKGRFELA 341 TGKELVA+A+H+ R PF+ +N AA+P ++ESELFGHEKGAFT A GRFE A Sbjct: 171 TGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQA 230 Query: 342 DKGTLFLDEIGEISASFQAKLLRVLQEQEFERVGSNQTIKVDVRVIAATNRNLEDAVARN 401 + GTLFLDEIG++ Q +LLRVLQ+ E+ VG I+ DVR++AATN++L+ ++ + Sbjct: 231 EGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQG 290 Query: 402 EFRADLYYRISVVPLLVPPLRERRGDIPLLAAEFLKNFNSENGRTMVFDASATEVLMNCA 461 FR DLYYR++VVPL +PPLR+R DIP L F++ E FD A E++ Sbjct: 291 LFREDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKEGLDVKRFDQEALELMKAHP 350 Query: 462 FPGNVRELENCVQRTATLAAGASIGRNDFDCCHGRCLSAMLWKHASKETAPKSEPIAPSP 521 +PGNVRELEN V+R L I R + + + Sbjct: 351 WPGNVRELENLVRRLTALYPQDVITREIIENELRSEI-------PDSPIEKAAARSGSLS 403 Query: 522 LNPAMQSSGAFASAAIGVPHDDSEQALPAPVRLGLVSDAKMTDRERLIAAMERSGWVQAK 581 ++ A++ + A+ G ALP V + ++AA+ + Q K Sbjct: 404 ISQAVEENMRQYFASFG-------DALPPSGLYDRVLAE--MEYPLILAALTATRGNQIK 454 Query: 582 AARLLGLTPRQIGYALRKYGIEIK 605 AA LLGL + +R+ G+ + Sbjct: 455 AADLLGLNRNTLRKKIRELGVSVY 478
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 426 bits (1098), Expect = e-149 Identities = 160/492 (32%), Positives = 241/492 (48%), Gaps = 47/492 (9%) Query: 1 MSAESGPVIFIDDDEDVLRAATQMLKLASFSPSVFGSAEAALARIDGNFDGPVVSDIRMP 60 M+ ++ DDD + Q L A + + +A I VV+D+ MP Sbjct: 1 MTG--ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMP 58 Query: 61 GLNGLQLFERVKAIDPEIPVVLITGHADVELAVAAIQDGAYDFISKPYANDRLLVTLHRA 120 N L R+K P++PV++++ A+ A + GAYD++ KP+ L+ + RA Sbjct: 59 DENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRA 118 Query: 121 SEKRRLVLENRRLRDAVVRSAGDIPLIGEAPTMIRLRETLRQIADTDVDVLVEGETGTGK 180 + + RR S +PL+G + M + L ++ TD+ +++ GE+GTGK Sbjct: 119 LAEPK-----RRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGK 173 Query: 181 EVVADLLHRWSRRRTKPFVALNCGALPESVIDSELFGHEAGAFTGAQRRRTGRIEHSNGG 240 E+VA LH + +RR PFVA+N A+P +I+SELFGHE GAFTGAQ R TGR E + GG Sbjct: 174 ELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGG 233 Query: 241 TLFLDEIESMPPALQVKLLRVLETRQITPLGTNETRSIDLRVVSATKADLGDPAARGDFR 300 TLFLDEI MP Q +LLRVL+ + T +G D+R+V+AT DL +G FR Sbjct: 234 TLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFR 293 Query: 301 EDLYFRLNVVTLRIPPLRERREDIPMLFGHFLERASKRFSRPVPDISAGVRDRLVSHNWP 360 EDLY+RLNVV LR+PPLR+R EDIP L HF+++A + V + + +H WP Sbjct: 294 EDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAE-KEGLDVKRFDQEALELMKAHPWP 352 Query: 361 GNVRELVHFADRVAL-------GLERLGTPIASGRKEQAVSSLH---------------- 397 GNVREL + R+ E + + S + + Sbjct: 353 GNVRELENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENM 412 Query: 398 ----------------LSEKVSLYEATIIRDALQECGGDVRRTIEVLGVPRKTFYDKLKR 441 ++ E +I AL G+ + ++LG+ R T K++ Sbjct: 413 RQYFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRE 472 Query: 442 HGIDTADYRKTA 453 G+ ++A Sbjct: 473 LGVSVYRSSRSA 484
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 102 bits (255), Expect = 1e-26 Identities = 77/339 (22%), Positives = 127/339 (37%), Gaps = 22/339 (6%) Query: 8 LITGVTGQDGSYLAELLLEKGYSVHGIKRRSSLFNTGRIDHLYHDPHESGVDLTLHHGDL 67 L+TG G G ++++ LLE G+ V GI + ++ + G H DL Sbjct: 4 LVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGF--QFHKIDL 61 Query: 68 TDSSSLTRVIQLVQPDEIYNLAAQSHVAVSFEEPEYTANSDALGALRILEAIRILGLVKH 127 D +T + + ++ + V S E P A+S+ G L ILE R ++H Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNK-IQH 120 Query: 128 TRYYQASTSELYGLVRETPQTETTPF-YPRSPYAVAKLYAHWITVNYRESYNLYACNGIL 186 Y AS+S +YGL R+ P + +P S YA K + Y Y L A Sbjct: 121 LLY--ASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRF 178 Query: 187 FNHESPARGETFVTRKITRALTRIKLGMQRTLFLGNLNARRDWGHARDYVQMQWLMLQQQ 246 F P K T+A + G ++ +RD+ + D + + Sbjct: 179 FTVYGPWGRPDMALFKFTKA---MLEGKSIDVY-NYGKMKRDFTYIDDIAEAIIRLQD-- 232 Query: 247 QPEDFVIASGEQHSVREFVTVAAAELGIDVRWVGEGVDE---EGYDAKTGALIVKVDPRY 303 VI + E T AA+ V +G + A AL ++ Sbjct: 233 -----VIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNM 287 Query: 304 --FRPAEVETLLGDARKAKEKLGWEPKISFIELVREMVR 340 +P +V D + E +G+ P+ + + V+ V Sbjct: 288 LPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVN 326
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 91.4 bits (227), Expect = 3e-23 Identities = 64/348 (18%), Positives = 128/348 (36%), Gaps = 51/348 (14%) Query: 8 KVYVAGHRGLVGSATMRALEALGSYEI----ITRTHD-------------------ELDL 44 K V G G +G + L G + + +D ++DL Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 45 FDRSETRRFFMSQRPDYVVMCAAKVGGILANASSPVDFLHNNLAIQVSVFDAAYASGVER 104 DR F S + V + + + + +P + +NL +++ + + ++ Sbjct: 62 ADREGMTDLFASGHFERVFISPHR-LAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 105 MIFLGSSCIYPRDCPQPIREEYLLTGPLEATNRPYALAKIAGVESCWSFNRQYKARYLAL 164 +++ SS +Y + P + + P+ YA K A +++ Y L Sbjct: 121 LLYASSSSVYGLNRKMPFSTDDSVDHPVS----LYAATKKANELMAHTYSHLYGLPATGL 176 Query: 165 MPTNLYGP-GDNYHPENCHVLPALIRRFHQAKMNGDSSVGVWGSGNPRREFMYSSDVGDA 223 +YGP G P+ + +F +A + G S+ V+ G +R+F Y D+ +A Sbjct: 177 RFFTVYGPWGR---PD------MALFKFTKAMLEGK-SIDVYNYGKMKRDFTYIDDIAEA 226 Query: 224 IAFLLGLPDSDFDALTAPDTAP--------LINVGVGEDVTIREVAELVKAAVGWEGNLV 275 I L + T P + N+G V + + + ++ A+G E Sbjct: 227 IIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKN 286 Query: 276 FDTTKPDGTPRKLLDVTRLRN-LGWKAKTSLGAGLQAT---YEDFLRL 319 +P D L +G+ +T++ G++ Y DF ++ Sbjct: 287 MLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDFYKV 334
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 440 bits (1133), Expect = e-152 Identities = 141/389 (36%), Positives = 201/389 (51%), Gaps = 18/389 (4%) Query: 197 LIEKQPRPEQSLDEDRTHPARHPH--VKIDGIIGESPALKQVLEIVSVVARTNSTVLLRG 254 L E ++L E + P++ ++G S A++++ +++ + +T+ T+++ G Sbjct: 108 LTELIGIIGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITG 167 Query: 255 ESGTGKEFFAQAIHKLSHRREKSFVKLNCAALPESVLESELFGHEKGAFTGAILQRAGRF 314 ESGTGKE A+A+H RR FV +N AA+P ++ESELFGHEKGAFTGA + GRF Sbjct: 168 ESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRF 227 Query: 315 ELANGGTLLLDEIGEISPAFQAKLLRVLQEGELERVGGTRTLKVDVRLICATNKDLEMAV 374 E A GGTL LDEIG++ Q +LLRVLQ+GE VGG ++ DVR++ ATNKDL+ ++ Sbjct: 228 EQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSI 287 Query: 375 RNGEFRADLYYRINVVPIVLPPLRERPGDIPRLAKALLDRFNKENHRDLAFTPSALDLIS 434 G FR DLYYR+NVVP+ LPPLR+R DIP L + + + KE F AL+L+ Sbjct: 288 NQGLFREDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKEGLDVKRFDQEALELMK 347 Query: 435 QCYFPGNVRELENCVRRTATLARSMTITPSDFACQNSQCLSSLLWKGVGRSHGAYAVDEF 494 +PGNVRELEN VRR L IT + + + G+ Sbjct: 348 AHPWPGNVRELENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGS------ 401 Query: 495 ARGNMMPVGSPLPAMRVGPSQNEASPGETCDPNHPACPAINQRLTERDRLIDAMEKAGWV 554 S A+ Q AS G+ P E ++ A+ Sbjct: 402 --------LSISQAVEENMRQYFASFGDALPP--SGLYDRVLAEMEYPLILAALTATRGN 451 Query: 555 QAKAARFLGLTPRQVGYALRRHHIEVKKF 583 Q KAA LGL + +R + V + Sbjct: 452 QIKAADLLGLNRNTLRKKIRELGVSVYRS 480
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 112 bits (282), Expect = 7e-31 Identities = 78/250 (31%), Positives = 111/250 (44%), Gaps = 13/250 (5%) Query: 5 GRVVIITGAAGGIGRALVEIVAADGDIVVAVDLPGSGVLELAGGL---GHPHLGLECDVS 61 G++ ITGAA GIG A+ +A+ G + AVD + ++ L DV Sbjct: 8 GKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVR 67 Query: 62 REEDIVALYGRIEAQFAKIDVLVNNAAIGPAMAATIDTGFEAFRRVLATNLIGPFIMAGE 121 I + RIE + ID+LVN A + E + + N G F + Sbjct: 68 DSAAIDEITARIEREMGPIDILVNVAGV-LRPGLIHSLSDEEWEATFSVNSTGVFNASRS 126 Query: 122 AARRM--QPGAAIVNVASLAGVLGNPKRNAYASSKAGLIALTRSLACEWASRGIRVTAVA 179 ++ M + +IV V S + AYASSKA + T+ L E A IR V+ Sbjct: 127 VSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVS 186 Query: 180 PGYVRTPMVAEL-------ERAGKMDLAAVRRRVPMGRMARPDEIARAVRFLASAQTGYI 232 PG T M L E+ K L + +P+ ++A+P +IA AV FL S Q G+I Sbjct: 187 PGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHI 246 Query: 233 TGSVLTVDGG 242 T L VDGG Sbjct: 247 TMHNLCVDGG 256 Score = 43.5 bits (102), Expect = 6e-07 Identities = 32/127 (25%), Positives = 50/127 (39%), Gaps = 3/127 (2%) Query: 274 RTVVVTGGANGIGAAVVRRFAANSDTVVIADKDGAGAAELADLLG--GRHV-AKSVDLAV 330 + +TG A GIG AV R A+ + D + ++ L RH A D+ Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 331 ESDVVALFEEIRGRFGRIEVLVNCAAIADTFVRGIEIPQQIERVLDVNLTGTFTCARGDQ 390 + + + I G I++LVN A + + ++ E VN TG F +R Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128 Query: 391 VDGRRRR 397 RR Sbjct: 129 KYMMDRR 135
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 67.8 bits (165), Expect = 4e-16 Identities = 41/134 (30%), Positives = 58/134 (43%), Gaps = 9/134 (6%) Query: 33 REAIKSMDA--GGVILNLGSINSFLPFVPRHAYGASTAGMNILTRCMAAELGSVGIRTAT 90 R K M G I+ +GS + +P AY +S A + T+C+ EL IR Sbjct: 125 RSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNI 184 Query: 91 VALGYIRTPDIAQL-----VESGCI--DSVAIKRRIPMGRMGEPEDVAEAVFFLASPDAS 143 V+ G T L I K IP+ ++ +P D+A+AV FL S A Sbjct: 185 VSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAG 244 Query: 144 YVNGSTLYVDGGLT 157 ++ L VDGG T Sbjct: 245 HITMHNLCVDGGAT 258
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 41.7 bits (98), Expect = 1e-06 Identities = 23/123 (18%), Positives = 40/123 (32%), Gaps = 2/123 (1%) Query: 2 KPRVLICSQDAEFYLFLSHILEVDGFVSEPAGGAKEALAMADDRDFQAVVLDCGSTSLTG 61 +L+ DA L+ L G+ A D VV D Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 62 SAICARLKREPRTGGLPIIALIAPGAENQHLDLLKAGIDESFVRPVAPAKLLDCLRTRLA 121 + R+K+ LP++ + A + + G + +P +L+ + LA Sbjct: 63 FDLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 122 LPK 124 PK Sbjct: 121 EPK 123
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 29.4 bits (65), Expect = 0.024 Identities = 33/152 (21%), Positives = 55/152 (36%), Gaps = 20/152 (13%) Query: 137 RRSWEKALYEVKARGGRPYAIPA-GASVHPNGGLGYVGFAEEVRAQEEQLGFAFDYMVVC 195 R++ E+A + R YA+PA G+ V G G + A+ + + + A V+ Sbjct: 232 RKAEEQARQQAAIRAANTYAMPANGSVVATAAGRGLIQVAQGAASLAQAISDAIA--VLG 289 Query: 196 TVTGSTHAGMLVGFAK---------------DGRQRNVIGIDAS--ATPAKTKAQVLSIA 238 V S + M VGFA R +G+DA+ P ++ A Sbjct: 290 RVLASAPSVMAVGFASLTYSSRTAEQWQDQTPDSVRYALGMDAAKLGLPPSVNLNAVAKA 349 Query: 239 RHTATLVELGSELAEDDVVLLEDYAHPRYGIP 270 T L + A + L + +P Sbjct: 350 SGTVDLPMRLTNEARGNTTTLSVVSTDGVSVP 381
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 31.1 bits (70), Expect = 3e-04 Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 4/60 (6%) Query: 8 DAQKAFILKQGADGIPVAEICRRAGISQAT-YFNWKKK---YDGLLPTEMKRLKQLEDEN 63 D +QG + EI + AG+++ Y+++K K + + + +LE E Sbjct: 18 DVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELELEY 77
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 29.0 bits (65), Expect = 0.033 Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 18/69 (26%) Query: 177 QLANAIRGYAAEYGLIAARGMCKIEPLLERIAADKMLPDLARELFALHAKEYAQLQTQLK 236 +R A E G+ P+L+R LAR L+ A + + Sbjct: 290 AQVQTVRKIAEEEGV----------PILQR-------IPLARALYW-DALVDHYIPAEQI 331 Query: 237 DVDAKLMAW 245 + A+++ W Sbjct: 332 EATAEVLRW 340
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 45.3 bits (107), Expect = 2e-08 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 5/72 (6%) Query: 94 CLLGNAEDR--WG--TLVDNLHVLPTAKGRGVGRHLIRVAAGWSAENYPGVGLHLWVYEV 149 +G + R W L++++ V + +GVG L+ A W+ EN GL L ++ Sbjct: 75 NCIGRIKIRSNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKEN-HFCGLMLETQDI 133 Query: 150 NAPARAFYERMG 161 N A FY + Sbjct: 134 NISACHFYAKHH 145
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 28.2 bits (63), Expect = 0.043 Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 5/55 (9%) Query: 8 ALILEMLPDMPRQLALAARHIADHPDQVLVHSMRDLASRASVSPATLLRLTQTLK 62 ALIL L A+ ++ P +V + R +A SP + + + L+ Sbjct: 141 ALILSYLDP-----QKASFILSSLPTEVQTNVARRIALMDRTSPEVVREVERVLE 190
>PF05043#Transcriptional activator Length = 493 Score = 28.8 bits (64), Expect = 0.029 Identities = 9/40 (22%), Positives = 16/40 (40%) Query: 4 RHVTDHQMRLFMKLRQEHTTEVAAAKASISRATAYRIKKN 43 +H T + F+ + E + IS ++ YRI Sbjct: 84 KHSTHFSILEFIFFNEGCQAESICKEFYISSSSLYRIISQ 123
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 29.0 bits (65), Expect = 0.034 Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 18/69 (26%) Query: 159 QLANAIRGYAAEYGLIAARGMCKIEPLLERIAADKMLPDLARELFALHAKEYAQLQTQLK 218 +R A E G+ P+L+R LAR L+ A + + Sbjct: 290 AQVQTVRKIAEEEGV----------PILQR-------IPLARALYW-DALVDHYIPAEQI 331 Query: 219 DVDAKLMAW 227 + A+++ W Sbjct: 332 EATAEVLRW 340
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 29.8 bits (66), Expect = 0.014 Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 11/87 (12%) Query: 136 GLPEAKRGLVAGAGGALRLGEMLPPVLANEILLTGLLFEAPRAYQLGLVNRLVPEHFLLE 195 A RGL+ A GA L + + +A +L +L AP +G + L Sbjct: 259 VATAAGRGLIQVAQGAASLAQAISDAIA---VLGRVLASAPSVMAVGFAS--------LT 307 Query: 196 AAMSLADSIAQNAPLSVRASLALVKAQ 222 + A+ P SVR +L + A+ Sbjct: 308 YSSRTAEQWQDQTPDSVRYALGMDAAK 334
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.5 bits (63), Expect = 0.046 Identities = 7/20 (35%), Positives = 11/20 (55%) Query: 38 LTILGPSGSGKTTALMLLAG 57 + + G G GK+T + L G Sbjct: 599 VVLEGTGGIGKSTLINTLVG 618
>AUTOINDCRSYN#Autoinducer synthesis protein signature. Length = 216 Score = 158 bits (400), Expect = 8e-51 Identities = 44/164 (26%), Positives = 69/164 (42%), Gaps = 3/164 (1%) Query: 1 MIELIAPGWYGAFADELHEMHRLRYRVFKERLDWNVRTTGGFEIDSFDSLKPHYLVLRDS 60 M+E+ + E+ LR FK+RL+W V+ T G E D +D+ YL Sbjct: 1 MLEIFDVNHTLLSETKSGELFTLRKETFKDRLNWAVQCTDGMEFDQYDNNNTTYLFGIKD 60 Query: 61 AGRVRGGVRLLPSTGPTMLRDVFSRLLEGRAAPEEPSVWESSRFALDLPPSAPKDSGSIA 120 V +R + + P M+ F + P E + ESSRF +D A G+ Sbjct: 61 -NTVICSLRFIETKYPNMITGTFFPYFKEINIP-EGNYLESSRFFVD-KSRAKDILGNEY 117 Query: 121 VATYELLAGMIEFGLSRLLTHIVTVTDLRMERILRRAGWPLDRI 164 + L MI + + I T+ M IL+R+GW + + Sbjct: 118 PISSMLFLSMINYSKDKGYDGIYTIVSHPMLTILKRSGWGIRVV 161
>OMPTIN#Omptin serine protease signature. Length = 317 Score = 105 bits (263), Expect = 2e-28 Identities = 76/323 (23%), Positives = 135/323 (41%), Gaps = 25/323 (7%) Query: 13 ALLAAWPAMASDAVASEPAPYNP-NFSFVGGVGVIDIQANELVYQAPGSGSKLSHLIWE- 70 ++ P S ++E + P N + +G + + E VY A G K+S L W+ Sbjct: 7 GIVLTTPIAISSFASTETLSFTPDNINADISLGTLSGKTKERVYLAEEGGRKVSQLDWKF 66 Query: 71 STSAVISAEMT-------ARSEAGWTAKLSGQIAFSGNSYMEDYDWNPSFSTNDGWNDWS 123 + +A+I + + AGWT S GN M D DW S + W+ Sbjct: 67 NNAAIIKGAINWDLMPQISIGAAGWTTLGSR----GGN--MVDQDWMDSSNPGT----WT 116 Query: 124 NRSRHCDTDLDYFYSATVALGHDFQFSDQLLINVNGGFKYTSVKWTAYGGSYVYSV-AGF 182 + SRH DT L+Y + + + + G++ + +TA GGSY+YS GF Sbjct: 117 DESRHPDTQLNYANEFDLNIKGWLLNEPNYRLGLMAGYQESRYSFTARGGSYIYSSEEGF 176 Query: 183 RDSVGDFPGDAKAISYQQKLPVAFAGIDATYVQDRWNFGFALKGGTTFSAGATDHHW--M 240 RD +G FP +AI Y+Q+ + + G+ +Y + + G K + D H+ Sbjct: 177 RDDIGSFPNGERAIGYKQRFKMPYIGLTGSYRYEDFELGGTFKYSGWVESSDNDEHYDPG 236 Query: 241 RDLRFEDDFESAPVLMVGGSVGYQYNERTSFFVSGSYVKVFTARGDYNTYDIATG-AETG 299 + + + + V + GY +V G++ +V +G+ + YD ++ Sbjct: 237 KRITYRSKVKDQNYYSVAVNAGYYVTPNAKVYVEGAWNRVTNKKGNTSLYDHNNNTSDYS 296 Query: 300 GEDDWIGGDFAAATVMVGIKTSF 322 + G + G+K +F Sbjct: 297 K--NGAGIENYNFITTAGLKYTF 317
>CHLAMIDIAOMP#Chlamydia major outer membrane protein signature. Length = 393 Score = 28.0 bits (62), Expect = 0.033 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 4/40 (10%) Query: 82 DRAFSFTVNERG--WEWGSATISAADIYRYASIDEDLELI 119 D AFS++V R WE G AT+ A+ ++YA +E + Sbjct: 188 DTAFSWSVGARAALWECGCATLGAS--FQYAQSKPKVEEL 225
>SALSPVBPROT#Salmonella virulence plasmid 65kDa B protein signature. Length = 591 Score = 30.1 bits (67), Expect = 0.012 Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 5/94 (5%) Query: 41 SQHDEILVSR--IDRSFKSSDRTYGARRVWHDVLAEGLSCGLHRIERLMRENGLRARPRR 98 +Q E L+SR + + S + A V+ + +AEGLS L + + GL+ + Sbjct: 421 TQAKETLLSRDYLSTNEPSDEEFKNAMSVYINDIAEGLS-SLPETDHRVVYRGLKLD--K 477 Query: 99 RGLPKDTGERAAVSDNLLDRAFEASAPNQKWVAD 132 L E + + ++D+AF +++P++ W+ D Sbjct: 478 PALSDVLKEYTTIGNIIIDKAFMSTSPDKAWIND 511
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 350 bits (900), Expect = e-125 Identities = 181/255 (70%), Positives = 212/255 (83%) Query: 8 ALPANAWNWVAVWRRNYLAWKKVALVSLLGNLADPMIYLFGLGTGLGIMVGRVDGASYIA 67 ALP + NW+AVWRRNY+AWKK AL SLLG+LA+P+IYLFGLG GLG+MVGRV G SY A Sbjct: 8 ALPGGSLNWIAVWRRNYIAWKKAALASLLGHLAEPLIYLFGLGAGLGVMVGRVGGVSYTA 67 Query: 68 FLAAGMVAVSAMTASTLETLYAAFARMHSQRTWEAMLYTHVTLGDIVLGELAWAATKAFM 127 FLAAGMVA SAMTA+T ET+YAAF RM QRTWEAMLYT + LGDIVLGE+AWAATKA + Sbjct: 68 FLAAGMVATSAMTAATFETIYAAFGRMEGQRTWEAMLYTQLRLGDIVLGEMAWAATKAAL 127 Query: 128 AGTAITIVTATLGYAAWPSVLYALPIIALTGCVFASLAMIVTALSPSYDYFVFYQTLVLT 187 AG I +V A LGY W S+LYALP+IALTG FASL M+VTAL+PSYDYF+FYQTLV+T Sbjct: 128 AGAGIGVVAAALGYTQWLSLLYALPVIALTGLAFASLGMVVTALAPSYDYFIFYQTLVIT 187 Query: 188 PMLFLSGAVFPLNQLPGAFQQIARCMPLSHAIDLIRPVMLDRPISGIALHVGVLGLYALL 247 P+LFLSGAVFP++QLP FQ AR +PLSH+IDLIRP+ML P+ + HVG L +Y ++ Sbjct: 188 PILFLSGAVFPVDQLPIVFQTAARFLPLSHSIDLIRPIMLGHPVVDVCQHVGALCIYIVI 247 Query: 248 PFFLSMALLRRRLMR 262 PFFLS ALLRRRL+R Sbjct: 248 PFFLSTALLRRRLLR 262
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 191 bits (487), Expect = 1e-59 Identities = 94/364 (25%), Positives = 150/364 (41%), Gaps = 22/364 (6%) Query: 10 DVVLEIDLAAIRANFQKISTLVGDKVKVAAVVKSDAYGLGLVDIARTLIDAGCDLLFVAN 69 + +DL A++ N + +V +VVK++AYG G+ I + + N Sbjct: 4 PIQASLDLQALKQNLSIVRQA-ATHARVWSVVKANAYGHGIERIWSAIGATDG--FALLN 60 Query: 70 LDEALLLRSSFSRVAI----AVFRDEFDRFGTWYRSHGLIPVVNNCKELHAVGTA--GEP 123 L+EA+ LR + I F + +R L V++ +L A+ A P Sbjct: 61 LEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHR---LTTCVHSNWQLKALQNARLKAP 117 Query: 124 QSYFLNVETGFSRFGLSVGDIQREY-LLRTFERYRPSIVLSHLACGECISDPMNQLQRDR 182 +L V +G +R G + + LR ++SH A E + R Sbjct: 118 LDIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISGAMAR-- 175 Query: 183 FRTVYDLLKPTRGSLSASAGVWLGKSYHFDMVRVGSALYGI----HNAGVQTNPLKPVVK 238 + L R SLS SA HFD VR G LYG + L+PV+ Sbjct: 176 IEQAAEGL-ECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMT 234 Query: 239 LRARILDVRSVPAGEAVGYGATFRTDRASRVAIVGIGYKHGLPWSCANKIFVRLAEYSAP 298 L + I+ V+++ AGE VGYG + R+ IV GY G P V + Sbjct: 235 LSSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHAPTGTPVLVDGVRTM 294 Query: 299 SIGRISMEYMIIDITDVPARRCSPGTFAELLSEDFTVNDLGAAAGVSPQEALTRLGAGCT 358 ++G +SM+ + +D+T P + GT EL ++ ++D+ AAAG E + L Sbjct: 295 TVGTVSMDMLAVDLTPCP--QAGIGTPVELWGKEIKIDDVAAAAGTVGYELMCALALRVP 352 Query: 359 RKYL 362 + Sbjct: 353 VVTV 356
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.0 bits (67), Expect = 0.007 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 3/59 (5%) Query: 38 DGW-PAANLLACLLEIEMAERASRRIQRHREQSGLPAGKTFATFDFDF-PS-GIRKPHL 93 + W +L + ++ + + RH Q GL AGK F +F P G+R +L Sbjct: 1371 NHWYLGIDLGYGKFQSKLQTNHNAKFARHTAQFGLTAGKAFNLGNFGITPIVGVRYSYL 1429
>SECA#SecA protein signature. Length = 901 Score = 31.0 bits (70), Expect = 0.015 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 11/57 (19%) Query: 255 HLKRRLDQALRRRS--------SRDFPSIED--YRRFVDQEVAKQNRRRARLVDDER 301 H RR+D LR RS SR + S+ED R F V+ R+ + E Sbjct: 562 HESRRIDNQLRGRSGRQGDAGSSRFYLSMEDALMRIFASDRVSG-MMRKLGMKPGEA 617
>PF07675#Cleaved Adhesin Length = 1358 Score = 29.3 bits (65), Expect = 0.033 Identities = 12/48 (25%), Positives = 21/48 (43%) Query: 320 AGEFERELVPGAEWTFEAGMVFHVLMMAQGIGFSETVLITDNGPERLT 367 AG+ + ++ FEAG + M G+G + + D+ P T Sbjct: 488 AGDGGNQPARYDDFAFEAGKKYTFTMRRAGMGDGTDMEVEDDSPASYT 535
>SECA#SecA protein signature. Length = 901 Score = 29.8 bits (67), Expect = 0.019 Identities = 11/52 (21%), Positives = 28/52 (53%), Gaps = 5/52 (9%) Query: 82 KLKAQVD-SNNVQWDVMELSNPAFRPDANKYLEEIDYAAFDKETLDNLVPEA 132 +++ V+ N ++ ++ +LS+ + ++ ++ E L+NL+PEA Sbjct: 20 RMRKVVNIINAMEPEMEKLSDEELKGKTAEFRARLE----KGEVLENLIPEA 67
>PHAGEIV#Gene IV protein signature. Length = 426 Score = 26.8 bits (59), Expect = 0.021 Identities = 11/40 (27%), Positives = 16/40 (40%) Query: 47 PDVMGCVLSPSVQLAASAYPSVSLPVLRSFAFAALCYEPA 86 PDV G V S + + VLR+ F + P+ Sbjct: 50 PDVKGTVTVYSSDVKPENLRDFFISVLRANNFDMVGSIPS 89
>LUXSPROTEIN#Bacterial autoinducer-2 (AI-2) production protein LuxS signature. Length = 171 Score = 28.0 bits (62), Expect = 0.003 Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 4/49 (8%) Query: 18 APYTYVTTKHFLLEFGLETLRDL----PDFEALEDAGLLSKEKLLAGYI 62 AP V + T+ DL P+ + L + G+ + E L AG++ Sbjct: 15 APAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFM 63
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 46.4 bits (110), Expect = 2e-07 Identities = 56/266 (21%), Positives = 96/266 (36%), Gaps = 13/266 (4%) Query: 69 FILSVFVGAIADNFSRRRVMFAGWCLMAIASAMLATSVALGFVAPWMILGFSFLIACGSA 128 F + +GA++D F RR V+ A+ A++AT+ L W+ L ++A + Sbjct: 57 FACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFL-----WV-LYIGRIVAGITG 110 Query: 129 VNDPAWQASVGDIVDRRDVPAAVTLLTVGFNTVRTVGPALGGL---VVASFGLVTAFAVT 185 A + DI D + ++ F GP LGGL A A+ Sbjct: 111 ATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALN 170 Query: 186 ALSYLVPVCTIWRSKWKVRSSPLPREPLRTALHDGLRFTAMSSEIKASIARGTLFGLASI 245 L++L C + K PL RE L R+ + + A +A + L Sbjct: 171 GLNFLT-GCFLLPESHKGERRPLRREALNPL--ASFRWARGMTVVAALMAVFFIMQLVGQ 227 Query: 246 AILALLPLVVRDQLGGGPIAYGTLMGGFG-TGAVLAGVSNSMLRRSLQLERLMRLACVAC 304 AL + D+ G + FG ++ + + L R + L +A Sbjct: 228 VPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIAD 287 Query: 305 AACCLSLALTSSIAVAAIALAFGGAG 330 + LA + +A + +G Sbjct: 288 GTGYILLAFATRGWMAFPIMVLLASG 313
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 31.2 bits (70), Expect = 0.016 Identities = 31/108 (28%), Positives = 41/108 (37%), Gaps = 27/108 (25%) Query: 365 LSGSILLDGVDFLNLSQHELRKQRSRMQMIFQDPFASLNPRMNVGT-------------- 410 L GS+ DGV F++ S F+ AS NP VG Sbjct: 489 LQGSLKHDGVMFVDYSN-------------FKYTNASKNPNKGVGVTNGVSHLEVGFNKV 535 Query: 411 AIVEPLLINNLASRSEARDKVADLLQRVGLSPDMVNRFPHEFSGGQRQ 458 AI +NNLA S R + D L GLSP N+ +F ++ Sbjct: 536 AIFNLPDLNNLAITSFVRRNLEDKLTTKGLSPQEANKLIKDFLSSNKE 583
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 43.3 bits (102), Expect = 5e-07 Identities = 34/134 (25%), Positives = 52/134 (38%), Gaps = 19/134 (14%) Query: 145 GAVPVINENDATATPEVCLGDNDRLAARVAQIAKADLLILLSDVDGLF----TEDPHDNP 200 G VPVI E+ E + D D ++A+ AD+ ++L+DV+G TE Sbjct: 195 GGVPVILEDGEIKGVEAVI-DKDLAGEKLAEEVNADIFMILTDVNGAALYYGTEKEQ--- 250 Query: 201 LARMIPEVRRITPEIEIMASLSPARHGSGGMVTKLMAA-RIAMEAGCNVVIAKGSKSYPL 259 +R + E E+ +G M K++AA R G +IA K Sbjct: 251 ------WLREVKVE-ELRKYYEEGHFKAGSMGPKVLAAIRFIEWGGERAIIAHLEK---A 300 Query: 260 AAIENGAPSTWFIP 273 G T +P Sbjct: 301 VEALEGKTGTQVLP 314
>PF07132#Harpin protein (HrpN) Length = 356 Score = 26.2 bits (57), Expect = 0.006 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%) Query: 2 QFTTGKPEM-AQPETAKADVDKLRTNEKKWTKAL 34 QF PE+ +PE K + + ++K W KAL Sbjct: 256 QFMDQYPEVFGKPEYQKDNWQTAKQDDKSWAKAL 289
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.8 bits (67), Expect = 0.005 Identities = 13/110 (11%), Positives = 31/110 (28%), Gaps = 2/110 (1%) Query: 35 ATREEYERRLAQSNAAMTAREEELQRKQAAIDAAREDIDRQVAEKLKLERAGIAVEEARK 94 A E + QS+ E+ R Q + + ++ + ++ EE + Sbjct: 129 ALGAEADTLKTQSSLLQARLEQT--RYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLR 186 Query: 95 AKILVSTDLEDKDRKLGELEATLRARDEKLAAAQLQQAEFMKQQRALDDE 144 L+ + + E L + + + + R Sbjct: 187 LTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSR 236 Score = 28.6 bits (64), Expect = 0.009 Identities = 14/127 (11%), Positives = 35/127 (27%), Gaps = 7/127 (5%) Query: 25 NESLAAPLIAATREEYERRLAQSNAAMTAREEELQRKQAAIDAAREDIDRQVAEKLKLER 84 LI ++ + Q + + E A I+ R +L Sbjct: 183 EVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLS-RVEKSRLD--- 238 Query: 85 AGIAVEEARKAKILVSTDLEDKDRKLGELEATLRARDEKLAAAQLQQAEFMKQQRALDDE 144 + + + +++ K E LR +L + + ++ + + Sbjct: 239 ---DFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQL 295 Query: 145 KREMALT 151 + L Sbjct: 296 FKNEILD 302
>PF07132#Harpin protein (HrpN) Length = 356 Score = 30.4 bits (68), Expect = 0.019 Identities = 10/21 (47%), Positives = 16/21 (76%) Query: 565 WLKKYPDTFGKPLSEKDDWQE 585 ++ +YP+ FGKP +KD+WQ Sbjct: 257 FMDQYPEVFGKPEYQKDNWQT 277
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 28.7 bits (64), Expect = 0.007 Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 6/66 (9%) Query: 6 GLAAVLWRLGQHQEAIDHYQSMLKLNPND-----NQGIRYVLAGHLL-ARDDIKALRKLL 59 GL A +GQ+ AI Y ++ + + + G L A + ++L+ Sbjct: 75 GLGACRQAMGQYDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELI 134 Query: 60 KQHEDD 65 + Sbjct: 135 ADKTEF 140
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 73.7 bits (181), Expect = 2e-17 Identities = 28/138 (20%), Positives = 55/138 (39%) Query: 2 RTLFVDHHADLTRAVGVALGDSGFAVDVVPTLEQASSAFSCASYEILLLELVLPDGDGLD 61 L D A + + AL +G+ V + + ++++ ++V+PD + D Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 WLKQLRGEGHSVPALILSDVDDLEKRIAIFNGGADDFLLKPVYTNELIARMRAVLRRSTQ 121 L +++ +P L++S + I GA D+L KP ELI + L + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 122 MTAPIIVFGNLHFDPIGR 139 + + +GR Sbjct: 125 RPSKLEDDSQDGMPLVGR 142
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 130 bits (327), Expect = 9e-35 Identities = 58/264 (21%), Positives = 115/264 (43%), Gaps = 27/264 (10%) Query: 153 QVNLSVRVAEVSRSAMKALGVNLS-AFGQIDNFRVGLLSGGGTGSGAAQGGGTAGIGFNN 211 QV + +AEV + LG+ + + F SG + A G + Sbjct: 346 QVLVEAIIAEVQDADGLNLGIQWANKNAGMTQFTN---SGLPISTAIAGANQYNKDGTVS 402 Query: 212 GAV-----------------NIGAVLDALAKEHIASVLAEPNLTAMSGETASFLAGGEFP 254 ++ N +L AL+ +LA P++ + A+F G E P Sbjct: 403 SSLASALSSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMEATFNVGQEVP 462 Query: 255 IPVLQ-----ENKQVSVEFRHFGVSLEFVPTVLNNNRINIHVKPEVSELSSQGAVQINGI 309 + +N +VE + G+ L+ P + + + + ++ EVS ++ A + Sbjct: 463 VLTGSQTTSGDNIFNTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVA-DAASSTSSD 521 Query: 310 SVPAVSTRRADTVVELASGQSFAIGGLIRRNVNNNVSAFPWLGEMPILGALFRSSSFQKE 369 +TR + V + SG++ +GGL+ ++V++ P LG++P++GALFRS+S + Sbjct: 522 LGATFNTRTVNNAVLVGSGETVVVGGLLDKSVSDTADKVPLLGDIPVIGALFRSTSKKVS 581 Query: 370 ESELIILVTPYIVKPGSSPNQMSA 393 + L++ + P +++ Q S+ Sbjct: 582 KRNLMLFIRPTVIRDRDEYRQASS 605
>TYPE3OMGPROT#Type III secretion system outer membrane G protein family signature. Length = 607 Score = 124 bits (312), Expect = 4e-35 Identities = 51/155 (32%), Positives = 76/155 (49%), Gaps = 3/155 (1%) Query: 3 LLCAGFFLSAGTNGTLGVPLSLSKTPYRYTVLDQDISEALQQFGNNLNIRVNISAEVKGR 62 L LS + + L PY Y + + + L FG N + V +S ++ + Sbjct: 13 LTGTLLLLS---SYSWAQELDWLPIPYVYVAKGESLRDLLTDFGANYDATVVVSDKINDK 69 Query: 63 IRGSMPDLPPREFLDRLANMYGLQWYYDGLVLYVSAAKESQTRMLVLTSIRFDTFKGALD 122 + G P++FL +A++Y L WYYDG VLY+ E +R++ L K AL Sbjct: 70 VSGQFEHDNPQDFLQHIASLYNLVWYYDGNVLYIFKNSEVASRLIRLQESEAAELKQALQ 129 Query: 123 KLEISDDRYVVRPAPGDGLVLVSGPPRFTALVEQT 157 + I + R+ RP + LV VSGPPR+ LVEQT Sbjct: 130 RSGIWEPRFGWRPDASNRLVYVSGPPRYLELVEQT 164
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 81.9 bits (202), Expect = 9e-20 Identities = 40/165 (24%), Positives = 70/165 (42%), Gaps = 7/165 (4%) Query: 28 LYTQLQEREANEMLALLMDNGVHAVRVAAKDGTSTVQVDEKLLAYSIDLLNGKGLPRQSF 87 L++ L +++ ++A L + +G+ ++V + L +GLP+ Sbjct: 53 LFSNLSDQDGGAIVAQLTQMNIPYR---FANGSGAIEVPADKVHELRLRLAQQGLPKGG- 108 Query: 88 KNLG-EIFQGSGLIASPTEERARYVYALSEELSRTISDIDGVFSVRVHVVLPHNDLLRAG 146 +G E+ S E+ Y AL EL+RTI + V S RVH+ +P L Sbjct: 109 -AVGFELLDQEKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPKPSLFVRE 167 Query: 147 ATPSSASVFIRHDAKADLS-VLLPKIKMLVADSIEGLSYDKVEVV 190 SASV + + L + + LV+ ++ GL V +V Sbjct: 168 QKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLV 212
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 27.1 bits (59), Expect = 0.045 Identities = 38/179 (21%), Positives = 73/179 (40%), Gaps = 33/179 (18%) Query: 40 ERHQQHVRSWARAAYQRELARGHTEGLNAGAEE---------------MAALISQAVAEV 84 + H+Q ++ Q+ +G+ EGL G E+ M L+S+ + Sbjct: 50 QAHEQGYQAGIAEGRQQGHKQGYQEGLAQGLEQGLAEAKSQQAPIHARMQQLVSEFQTTL 109 Query: 85 ARRKAVLEQQLPQLVLEILSELLG---AFDPGELLVMAVRHAIERQYSGAEVCLHVYPTQ 141 +V+ +L Q+ LE +++G D L+ + + + L V+P Sbjct: 110 DALDSVIASRLMQMALEAARQVIGQTPTVDNSALIKQIQQLLQQEPLFSGKPQLRVHPDD 169 Query: 142 V----DMLAREFA--GWDGQDGRPRVRIKPDPTLSPRRCVLWSEYGNVDLGLDAQMRAL 194 + DML + GW R++ DPTL P C + ++ G++D + + + L Sbjct: 170 LQRVDDMLGATLSLHGW---------RLRGDPTLHPGGCKVSADEGDLDASVATRWQEL 219
>TYPE3OMOPROT#Type III secretion system outer membrane O protein family signature. Length = 303 Score = 131 bits (331), Expect = 7e-38 Identities = 46/182 (25%), Positives = 79/182 (43%), Gaps = 19/182 (10%) Query: 172 FRALGELFGQLPRQPRGLLSDLPIVVAGEIGTLHVPAAILRKACAGDALLPDLAPFGRGE 231 F L EL +P+ L L V IG+ ++L + GD LL + R E Sbjct: 131 FEHLPELPAVGGGRPKMLRWPLRFV----IGSSDTQRSLLGRIGIGDVLLIRTS---RAE 183 Query: 232 IALSLGQLWASADLEGDQLVLHGPFRPRSYSLENAHMTQLGSQLGPTE---DLDDVEIML 288 + +L +EG +V +L+ H+ + + E L+ + + L Sbjct: 184 VYCYAKKLGHFNRVEGGIIV---------ETLDIQHIEEENNTTETAETLPGLNQLPVKL 234 Query: 289 VFECGRWPIPLGELRSAGEGHIFELGRPIQDPVDILANGQCIGRGDIVRIGDTLGIRLRG 348 F R + L EL + G+ + L + V+I+ANG +G G++V++ DTLG+ + Sbjct: 235 EFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMNDTLGVEIHE 294 Query: 349 RL 350 L Sbjct: 295 WL 296
>TYPE3IMPPROT#Type III secretion system inner membrane P protein family signature. Length = 224 Score = 233 bits (596), Expect = 3e-80 Identities = 84/215 (39%), Positives = 130/215 (60%), Gaps = 7/215 (3%) Query: 9 LALLAVTAGLGLLVLVVVTTTAFVKVSVVLFLVRNALGTQTIPPNIALYAVALILTMFLS 68 ++L+A+ A LL ++ + T FVK S+V +VRNALG Q IP N+ L VAL+L+MF+ Sbjct: 5 ISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSMFVM 64 Query: 69 APVVEQTYDRMTDPKLHYQTFDDWVSAAKSGSEPLRDHLKKFTNEEQRQFFLSSTEKVWP 128 P++ Y D + + G + RD+L K+++ E QFF ++ K Sbjct: 65 WPIMHDAYVYFEDEDVTFNDISSLSKHVDEGLDGYRDYLIKYSDRELVQFFENAQLKRQY 124 Query: 129 AEM-------RAKATVDDLSILVPSFLISELKRAFEIGFLLYLPFIVIDLIVTTILMAMG 181 E + + + L+P++ +SE+K AF+IGF LYLPF+V+DL+V+++L+A+G Sbjct: 125 GEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYLYLPFVVVDLVVSSVLLALG 184 Query: 182 MSMVSPTLISVPFKLFVFVAIDGWSKLMHGLVLSY 216 M M+SP IS P KL +FVA+DGW+ L GL+L Y Sbjct: 185 MMMMSPVTISTPIKLVLFVALDGWTLLSKGLILQY 219
>TYPE3IMQPROT#Type III secretion system inner membrane Q protein family signature. Length = 86 Score = 55.9 bits (135), Expect = 3e-14 Identities = 20/72 (27%), Positives = 40/72 (55%) Query: 1 MSQSLVVFMIWILPPLIASVVVGLVIGIIQAATQIQDESLPLTVKLLVVVAVIGLFAPVL 60 +++L + +I P I + ++GL++G+ Q TQ+Q+++LP +KLL V + L + Sbjct: 8 GNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFLLSGWY 67 Query: 61 SAPLIELTDQIF 72 L+ Q+ Sbjct: 68 GEVLLSYGRQVI 79
>TYPE3IMRPROT#Type III secretion system inner membrane R protein family signature. Length = 261 Score = 162 bits (413), Expect = 2e-51 Identities = 39/226 (17%), Positives = 89/226 (39%), Gaps = 7/226 (3%) Query: 24 LGAARAIGIMMILPVFTRSQTDGLIRGCLAVGFGLPCLAHVSDALQALDPETRLIEVALL 83 R + ++ P+ + ++ LA+ + + L L Sbjct: 18 WPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFAL----WL 73 Query: 84 GLKEVLVGALLGTFLGIPLWGLQAAGEFIDNQRGVTNPSAPTDPATNSQASAMGVFLGIT 143 ++++L+G LG + ++ AGE I Q G++ + DPA++ + + + Sbjct: 74 AVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATF-VDPASHLNMPVLARIMDML 132 Query: 144 AIAIFVASGGLETLIGALYGSYLIWPVYKFYPTLSTQGAMEVLGLLDQIMRTALLVSGPV 203 A+ +F+ G LI L ++ P+ L++ + + I L+++ P+ Sbjct: 133 ALLLFLTFNGHLWLISLLVDTFHTLPI--GGEPLNSNAFLALTKAGSLIFLNGLMLALPL 190 Query: 204 VFFMTLIDVSFMLLRRFAPQFKLTQLSPAIKNLVFPILMVTYAGYL 249 + + ++++ LL R APQ + + + V LM + Sbjct: 191 ITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLI 236
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 310 bits (795), Expect = e-106 Identities = 96/338 (28%), Positives = 160/338 (47%), Gaps = 4/338 (1%) Query: 5 SEEKTHAATPKKLNDARKKGQLPHSSDFVRAVGTCAGLGYLWLRGSAIEDKCREALLFVD 64 S EKT TPKK+ DARKKGQ+ S + V A L + + +L Sbjct: 2 SGEKTEQPTPKKIRDARKKGQVAKSKEVVSTALIVALSAMLMGLSDYYFEHFSKLMLIPA 61 Query: 65 KLQNLPFDFAVRQALVVLAELTLATVGPLLGTLVAAVLLASILANGGFVFSLEPMTPNFD 124 + LPF A+ + + PLL + A + +AS + GF+ S E + P+ Sbjct: 62 EQSYLPFSQALSYVVDNVLLEFFYLCFPLLT-VAALMAIASHVVQYGFLISGEAIKPDIK 120 Query: 125 KINPFQGLKRLASARSMVELGKTLFKVFVLGATFSFCLLGMWKTMVYLPFCGMGCLGLVV 184 KINP +G KR+ S +S+VE K++ KV +L + G T++ LP CG+ C+ ++ Sbjct: 121 KINPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITPLL 180 Query: 185 TGA-KLLIGIGAGALLAAGLIDLLVQRALFLREMRMTKTEVTRELKDQQGAPELKSERRR 243 + L+ I + + D + +++E++M+K E+ RE K+ +G+PE+KS+RR+ Sbjct: 181 GQILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKRRQ 240 Query: 244 IRDESADEPPL-GVHHATLIFKG-TAILIGLRYVRGETGVPVLVCRADGERASHLLSEAR 301 E V ++++ T I IG+ Y RGET +P++ + + + A Sbjct: 241 FHQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKIAE 300 Query: 302 ALRLEIVDNDVLAHQLIGKTQLGRPIPMQYFEPVARAL 339 + I+ LA L + IP + E A L Sbjct: 301 EEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVL 338
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 130 bits (327), Expect = 1e-37 Identities = 81/254 (31%), Positives = 117/254 (46%), Gaps = 13/254 (5%) Query: 98 EGKVAVVTGAGAGIGKACALAIAREGGRVVVADIDGSAAVACTAQIAAEAGHALALAMDI 157 EGK+A +TGA GIG+A A +A +G + D + + + AEA HA A D+ Sbjct: 7 EGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADV 66 Query: 158 ADAQAVAALFETAERHFGGVDLLVNNASAMHLTPRDRTILDLDLAVWDQTMATNLRGTLL 217 D+ A+ + ER G +D+LVN A + L W+ T + N G Sbjct: 67 RDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIH----SLSDEEWEATFSVNSTGVFN 122 Query: 218 CCRQAIPRMIARGGGAIVNMSSCQGLSGDTAQTSYAASKAAMNMLSASLATQYGHAQIRC 277 R M+ R G+IV + S T+ +YA+SKAA M + L + IRC Sbjct: 123 ASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRC 182 Query: 278 NAVAPGLI---MTERLLAKLDECMQR---HLSRHQL---LQRVGRPEDVAALVAFLLSDD 328 N V+PG M L A + Q L + L+++ +P D+A V FL+S Sbjct: 183 NIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQ 242 Query: 329 AAFITGQVLCIDGG 342 A IT LC+DGG Sbjct: 243 AGHITMHNLCVDGG 256
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 50.6 bits (121), Expect = 9e-09 Identities = 59/267 (22%), Positives = 96/267 (35%), Gaps = 15/267 (5%) Query: 89 FLLSIIAGALADNYSRRNLMFAGWCVIASSSTMLTVLAGLGIFNPWMVLAFSCLAGVGAA 148 F + + GAL+D + RR ++ A ++ L W++ +AG+ A Sbjct: 57 FACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFL-----WVLYIGRIVAGITGA 111 Query: 149 FTDPAWHASVGDILRKRDVPAAVTLISVGYNAVRSIGPALGGVVVASFGPLTAFAVAT-- 206 T A + DI + +S + GP LGG++ F P F A Sbjct: 112 -TGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLM-GGFSPHAPFFAAAAL 169 Query: 207 --LTYLMLLWTIGRCKWQVRPSPLPSEPLTTAIHDGARFTALSSEIKAAIARGALFGLTS 264 L +L + + R PL E L R+ + + A +A + L Sbjct: 170 NGLNFLTGCFLLPESHKGER-RPLRREALNPLA--SFRWARGMTVVAALMAVFFIMQLVG 226 Query: 265 ISILALLPLVARDQLGGGPVVYGILMAGFG-TGALFAGICNNILRRRLSQERLTTLSCIA 323 AL + D+ GI +A FG +L + + RL + R L IA Sbjct: 227 QVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIA 286 Query: 324 CAACCLSLAFTPSVAVAAIALALGGAG 350 + LAF +A + L +G Sbjct: 287 DGTGYILLAFATRGWMAFPIMVLLASG 313
>AUTOINDCRSYN#Autoinducer synthesis protein signature. Length = 216 Score = 152 bits (385), Expect = 2e-48 Identities = 41/164 (25%), Positives = 65/164 (39%), Gaps = 3/164 (1%) Query: 12 MIQLITPGLYSEFAGELKEMHGLRYRVFKERLDWEVQTGGEMETDTFDDLKPVYLLLKGS 71 M+++ + E+ LR FK+RL+W VQ ME D +D+ YL Sbjct: 1 MLEIFDVNHTLLSETKSGELFTLRKETFKDRLNWAVQCTDGMEFDQYDNNNTTYLFGIKD 60 Query: 72 DWRIRGCVRLLPTTGPTMLRDTFPALLGEAVAPASPDIWESSRFALDLPPSTPKAAGGLA 131 + + +R + T P M+ TF E + + ESSRF +D G Sbjct: 61 N-TVICSLRFIETKYPNMITGTFFPYFKE-INIPEGNYLESSRFFVD-KSRAKDILGNEY 117 Query: 132 QATYELFAGMIEFGLANNLTRIVTVTDTRMERILRLATWPLSRI 175 + LF MI + I T+ M IL+ + W + + Sbjct: 118 PISSMLFLSMINYSKDKGYDGIYTIVSHPMLTILKRSGWGIRVV 161
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 60.2 bits (146), Expect = 3e-13 Identities = 36/209 (17%), Positives = 70/209 (33%), Gaps = 12/209 (5%) Query: 15 EPVTPYQKAAQLWD-ERIGSSRVQARNWRFMALGCLTLAAGLSGGLVWQSMQSRVVPYVV 73 + + Y + A W+ +++ ++ + +A LA + + V PYV+ Sbjct: 8 DELKAYFEEAASWERDKLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVI 67 Query: 74 EVDGF-GEARAVAP--AIRDYEPSDAQIAWHLGRFIQNVRSVSTDPVLVRQNWLSAYDFA 130 VD GEA A +A + L +++ + + + + Sbjct: 68 TVDRNTGEASIAAKLHGDATITYDEAVRKYFLATYVRYREGW--IAAAREEYFDAVMVMS 125 Query: 131 TDRAA-LFLNEYAKAN--DPFGQIGT-RSVSVQVTSVVRASDSSFQVKWAEQVFERGSLA 186 + Y N P + V V++ V + QV + + GS + Sbjct: 126 ARPEQDRWSRFYKTDNPQSPQNILANRTDVFVEIKRVSFLGGNVAQVYF-TKESVTGSNS 184 Query: 187 STTRWTAILTIVIRP-PSNTDQLRNNPLG 214 + T A + + PS NPLG Sbjct: 185 TKTDAVATIKYKVDGTPSKEVDRFKNPLG 213
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 29.6 bits (66), Expect = 0.026 Identities = 28/93 (30%), Positives = 39/93 (41%), Gaps = 13/93 (13%) Query: 94 GIMPKAPVLGPPLPGDLG----RPILERQRQLGIAPGQDISAEEQRLAQQAIEARESQVL 149 G +P V G +PG G P+L+ G D+S LAQ +EA E Sbjct: 267 GAVPGGAVPGGAVPGGFGPGGFGPVLDG------WYGVDVSGSSVELAQSIVEAPELGAA 320 Query: 150 FRIDNRPRQTDVAGGGPSAQQPSEALPQSGATR 182 R+ R T V+GG S P + ++G R Sbjct: 321 IRVGRGARVT-VSGG--SLSAPHGNVIETGGAR 350
>INTIMIN#Intimin signature. Length = 939 Score = 30.4 bits (68), Expect = 0.016 Identities = 23/102 (22%), Positives = 36/102 (35%), Gaps = 1/102 (0%) Query: 3 HSGNLSHLAPPDFRKDATLDRLAERFNVAQFVSFSPSPSGPRQEYCRLAGLPANHQFATA 62 H+ L+ ++P D K D A + Q S A Sbjct: 141 HTNKLTKMSP-DVTKSNMTDDKALNYAAQQAASLGSQLQSRSLNGDYAKDTALGIAGNQA 199 Query: 63 SEAVQALFERSGEGTVNIRTFSEASSQSREFLYALQDSEAVL 104 S +QA + G VN+++ + S +FL DSE +L Sbjct: 200 SSQLQAWLQHYGTAEVNLQSGNNFDGSSLDFLLPFYDSEKML 241
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 156 bits (395), Expect = 2e-43 Identities = 67/262 (25%), Positives = 115/262 (43%), Gaps = 14/262 (5%) Query: 175 QQVNLEVRILEAKRNAGRDLGVSIRSNNSRSTTIVGTGIA---AVDKDNVVLGTGGFLSD 231 QV +E I E + G +LG+ + N+ T +G+ A+ N G S Sbjct: 345 PQVLVEAIIAEVQDADGLNLGIQWANKNAGMTQFTNSGLPISTAIAGANQYNKDGTVSSS 404 Query: 232 LLSTSTPFGALLTRVIDNNIKVDLYIEALEAKGAVRTLANPNLTTLSGEQASFNAGGEVP 291 L S + F + N + + AL + LA P++ TL +A+FN G EVP Sbjct: 405 LASALSSFNGIAAGFYQGNW--AMLLTALSSSTKNDILATPSIVTLDNMEATFNVGQEVP 462 Query: 292 -----IRTLDKNGEISIVYKQFGVNLLFTPVVLDDGKIHMNLAPEVSDLN----GFTTAG 342 T N ++ K G+ L P + + + + + EVS + ++ Sbjct: 463 VLTGSQTTSGDNIFNTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSTSSDL 522 Query: 343 DPIFTNRKLSTVVELRDGQSFAVGGLLSSRTTKLQNQVPWLGQVPVIGTLFRNSSNQKEE 402 F R ++ V + G++ VGGLL + ++VP LG +PVIG LFR++S + + Sbjct: 523 GATFNTRTVNNAVLVGSGETVVVGGLLDKSVSDTADKVPLLGDIPVIGALFRSTSKKVSK 582 Query: 403 TELVVIVTPHIVRPVKPGEQLA 424 L++ + P ++R Q + Sbjct: 583 RNLMLFIRPTVIRDRDEYRQAS 604
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 29.8 bits (67), Expect = 0.016 Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 6/95 (6%) Query: 163 LRAGHPTTVAIALVAREMPDP-LGTEFGIVSDEISFGLSLEQAVRKLSERVGFEGLHLLS 221 + A P A+ VA++ P L V ++ G SL A++ FE L+ Sbjct: 81 VAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSLADAMKCFPGS--FERLY--- 135 Query: 222 VSLSIQAKTGGNLTEILSNLSSVLRERRKLRMKIR 256 ++ +T G+L +L+ L+ +R+++R +I+ Sbjct: 136 CAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQ 170
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 32.5 bits (74), Expect = 0.002 Identities = 27/129 (20%), Positives = 48/129 (37%), Gaps = 26/129 (20%) Query: 193 HKWLGIQLSIVTLQL----RAGKPLREALRELADRIGLDEARALAVLFRQSEELGTSLTD 248 + L+++T QL A PL EAL +A + L R G SL D Sbjct: 63 IRLSTSDLALLTRQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSLAD 122 Query: 249 ALR--------IYSDEMRT-----------QRIMNAEERANALPVKMMIPLGLCIFPVVM 289 A++ +Y + R+ + E+ + ++ + I+P V+ Sbjct: 123 AMKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAM---IYPCVL 179 Query: 290 MVVMLPVLI 298 VV + V+ Sbjct: 180 TVVAIAVVS 188
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 31.3 bits (71), Expect = 0.007 Identities = 6/49 (12%), Positives = 19/49 (38%), Gaps = 3/49 (6%) Query: 306 RYLPAKNQLAAATSDLAATEAAI---KRATTDLEQKKSSVEADYKANVS 351 L +N+ A ++L ++ + + +++ V +K + Sbjct: 253 AVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEIL 301
>NAFLGMOTY#Sodium-type flagellar protein MotY precursor signature. Length = 293 Score = 28.9 bits (64), Expect = 0.031 Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 4/78 (5%) Query: 250 IVGVARAGEESGKDSKGRSAGERLKAFIKDPDKQPVLRLRQPVFTQAEAEKRASAALNER 309 I+ R G++ K SK R A ++ +++ Q + + +T + K S +L+ER Sbjct: 184 ILHYERQGDQLTKASKKRLA--QIADYVRH--NQDIDLVLVATYTDSTDGKSESQSLSER 239 Query: 310 AKEFLKGEAEAIGLPDIR 327 E L+ E++GLP+ R Sbjct: 240 RAESLRTYFESLGLPEDR 257
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 118 bits (297), Expect = 2e-33 Identities = 39/144 (27%), Positives = 66/144 (45%) Query: 9 VVDDDVDVRKSLGFLLATADFAVRLYESATAFLSTATGKLEGCIVTDVRMPGIDGIEFLR 68 V DDD +R L L+ A + VR+ +A +VTDV MP + + L Sbjct: 8 VADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDLLP 67 Query: 69 QLRASGHTIPVIVMTGHADVALAVQAMKEGAADFIEKPFDDEMLIEAIRSALANRNQAHA 128 +++ + +PV+VM+ A++A ++GA D++ KPFD LI I ALA + + Sbjct: 68 RIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKRRPS 127 Query: 129 AHPQSADIRDRLSTLSERERQVLD 152 + L S +++ Sbjct: 128 KLEDDSQDGMPLVGRSAAMQEIYR 151
>PF06580#Sensor histidine kinase Length = 349 Score = 31.8 bits (72), Expect = 0.007 Identities = 30/158 (18%), Positives = 60/158 (37%), Gaps = 28/158 (17%) Query: 341 MLRDAVERAAEQALRAGDVIRHLRDFVARGESERQVERLPVLIEE----AASLALVGARE 396 ++ + +A E +++R+ R + RQV L +E + L L + Sbjct: 185 LILEDPTKAREMLTSLSELMRY----SLRYSNARQV----SLADELTVVDSYLQLASIQF 236 Query: 397 INLL-VSYKLDPAAELVLTDRIQIQQVLLNLMRNAVEAMQGSPRRELKVTTVARDDGMAE 455 + L +++PA V + +Q ++ N +++ + + + LK T +D+G Sbjct: 237 EDRLQFENQINPAIMDVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGT---KDNGTVT 293 Query: 456 VSVIDTGPGLAPEVSAQLFQPFVTTKKHGMGVGLSICR 493 + V +TG K G GL R Sbjct: 294 LEVENTGSLALKNT------------KESTGTGLQNVR 319
>SECA#SecA protein signature. Length = 901 Score = 29.1 bits (65), Expect = 0.023 Identities = 28/111 (25%), Positives = 38/111 (34%), Gaps = 17/111 (15%) Query: 93 VCSPTRFLSVSARAADLIVTGQAGDNVFRAVDVGSLTLGAGRPVLVAATNVE-------- 144 V PT + DL+ +A D+ T G+PVLV ++E Sbjct: 410 VVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTA-KGQPVLVGTISIEKSELVSNE 468 Query: 145 ---HVLAKTVLVAWKDTREARRAMADALPFLAKASEVVIATIDTERGESIR 192 + VL A EA +A A + V IAT RG I Sbjct: 469 LTKAGIKHNVLNAKFHANEA-AIVAQA----GYPAAVTIATNMAGRGTDIV 514
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 53.7 bits (129), Expect = 4e-10 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 4/57 (7%) Query: 259 PMPAADLLGWTGPEILAEAERGVLQRALARADGNVSAAAQALGISRATLHRKLNRLD 315 +P + L +LAE E ++ AL GN AA LG++R TL +K+ L Sbjct: 422 ALPPSGLYD----RVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELG 474
>PF05272#Virulence-associated E family protein Length = 892 Score = 33.9 bits (77), Expect = 0.001 Identities = 15/56 (26%), Positives = 21/56 (37%), Gaps = 9/56 (16%) Query: 32 LVLLGPSGCGKSTLLNMIAGLESITSGEIRIAHEVVNDLPPKDRDIAMVFQSYALY 87 +VL G G GKSTL+N + GL+ + I +D Y Sbjct: 599 VVLEGTGGIGKSTLINTLVGLDFFSDTHFDI---------GTGKDSYEQIAGIVAY 645
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 78.6 bits (193), Expect = 3e-19 Identities = 54/184 (29%), Positives = 93/184 (50%), Gaps = 2/184 (1%) Query: 6 AVITGASGGIGAVYVDRLAERGYDLVLVARNGDKLTQVANRVRAKTGRKIDTLSADLANA 65 A ITGA+ GIG LA +G + V N +KL +V + ++A+ R + AD+ ++ Sbjct: 11 AFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAE-ARHAEAFPADVRDS 69 Query: 66 SDLARVEA-FLRETPDVTLLVNNAGLGGALKLLDSDVDQMTSLISLNVTALTRLTYAIVP 124 + + + A RE + +LVN AG+ + ++ + S+N T + + ++ Sbjct: 70 AAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSK 129 Query: 125 GFVARAAGTIINIASIVAINPESLNGVYGGSKAFVVAFSQNLRHELAGTGVRVQVVLPGA 184 + R +G+I+ + S A P + Y SKA V F++ L ELA +R +V PG+ Sbjct: 130 YMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPGS 189 Query: 185 TATD 188 T TD Sbjct: 190 TETD 193
>SECA#SecA protein signature. Length = 901 Score = 27.1 bits (60), Expect = 0.034 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 4/65 (6%) Query: 89 RDVPLPAWSEGLRQA-KYPEHV-VRHLS-AMAELTKQGRYDRMTDTLRKLTGEAPTNMRD 145 R + WS+GL QA + E V +++ + +A +T Q Y R+ + L +TG A T + Sbjct: 342 RTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQN-YFRLYEKLAGMTGTADTEAFE 400 Query: 146 FVKLH 150 F ++ Sbjct: 401 FSSIY 405
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 60.2 bits (146), Expect = 1e-11 Identities = 29/136 (21%), Positives = 56/136 (41%), Gaps = 13/136 (9%) Query: 388 RLRVLICEDETDVATVIAALLDSEGFSSDVAPDIATAKALLQSRDYAALTLDIKLAEESG 447 +L+ +D+ + TV+ L G+ + + AT + + D + D+ + +E+ Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 448 IKLFHDIRASPVNSDIAVIVISAVADEARRSLNGTAV-----GIVDWLEKPVDSGRLHAA 502 L I+ D+ V+V+SA TA+ G D+L KP D L Sbjct: 63 FDLLPRIKK--ARPDLPVLVMSAQNTFM------TAIKASEKGAYDYLPKPFDLTELIGI 114 Query: 503 LAKIVASRNEQRPKIL 518 + + +A + K+ Sbjct: 115 IGRALAEPKRRPSKLE 130 Score = 55.6 bits (134), Expect = 3e-10 Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 1/68 (1%) Query: 513 QRPKILHVEDDEGVLAVMSAGLGS-DVSIISAKTLQEARRAVAKRHFDLVILDIALPDGS 571 IL +DD + V++ L + R +A DLV+ D+ +PD + Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 572 GLDLLADL 579 DLL + Sbjct: 62 AFDLLPRI 69
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 78.3 bits (193), Expect = 4e-20 Identities = 37/125 (29%), Positives = 58/125 (46%), Gaps = 3/125 (2%) Query: 6 ARILYVDDEDDIREIAQMSLELDPEFEVRSCSSGAAALTDAAAWHPDLILLDVMMPDMDG 65 A IL DD+ IR + +L ++VR S+ A AA DL++ DV+MPD + Sbjct: 4 ATILVADDDAAIRTVLNQALS-RAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 66 PETLKRLAASPLTASIPVAFITARTQTHQVERYLAMGAVGVIAKPFDPLALAGEVRKLLS 125 + L R+ +PV ++A+ + GA + KPFD L G + + L+ Sbjct: 63 FDLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 126 EHPGR 130 E R Sbjct: 121 EPKRR 125
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 90.3 bits (224), Expect = 2e-24 Identities = 37/126 (29%), Positives = 61/126 (48%), Gaps = 2/126 (1%) Query: 5 KARVLICDDDPLLLELMEFRLRAKGYEVITAVDGAEALAKAEQHGPDIIVLDAMMPKADG 64 A +L+ DDD + ++ L GY+V + A D++V D +MP + Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 65 LEVLARLKGDPVLSDTPVVMLTARKAERDIVSALEKGADDYLVKPFIPEELLARLARLIA 124 ++L R+K D PV++++A+ + A EKGA DYL KPF EL+ + R +A Sbjct: 63 FDLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 125 RKNGKR 130 + Sbjct: 121 EPKRRP 126
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 38.0 bits (88), Expect = 3e-05 Identities = 25/125 (20%), Positives = 54/125 (43%), Gaps = 7/125 (5%) Query: 27 QTVDELYASAVKARQARHFDEAVDLLRRALALKPDNADALVQLG--FAELGRNDLAAARD 84 T+++LY+ A Q+ +++A + + L ++ + LG +G+ DLA Sbjct: 34 DTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAI--H 91 Query: 85 AFSKALSLAPTYQDASFGLAEIEFRSGNLDAA---LPLAESVARAQPGNTDAAALVENIR 141 ++S + F AE + G L A L LA+ + + + + V ++ Sbjct: 92 SYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELIADKTEFKELSTRVSSML 151 Query: 142 KAMQA 146 +A++ Sbjct: 152 EAIKL 156 Score = 31.8 bits (72), Expect = 0.004 Identities = 18/75 (24%), Positives = 31/75 (41%) Query: 261 DVLASSPDNVEALDLDAKVALLEADYTRAGQSFQRVLAIDPRNAEALVGIGDVRRAQGDD 320 + S D +E L A Y A + FQ + +D ++ +G+G R+A G Sbjct: 27 MLNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQY 86 Query: 321 DAARQAYREALAIEP 335 D A +Y ++ Sbjct: 87 DLAIHSYSYGAIMDI 101 Score = 31.4 bits (71), Expect = 0.005 Identities = 11/53 (20%), Positives = 23/53 (43%) Query: 181 AGKLPEAEKVYRRALGLAPKNTDILVALGLIVGSSQRFDEAGHFFDRALAIKP 233 +GK +A KV++ L ++ + LG + ++D A H + + Sbjct: 49 SGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDI 101
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 27.9 bits (62), Expect = 0.041 Identities = 19/116 (16%), Positives = 37/116 (31%), Gaps = 26/116 (22%) Query: 144 VAKLFGHFEMDVELGPKSRRYLVEAGFEDIRV----------ESFMVTNLDGDPQDFADV 193 + G +M+V +Y VE ++ V E + + +P Sbjct: 387 ILSFLGKVQMEVTCALLQEKYHVEIEIKEPTVIYMERPLKKAEYTIHIEVPPNPF----- 441 Query: 194 IVAWADVYAGEMATRRGDGPEFIARFRQG-----FQDHIFAALH---PKGYAGWPI 241 WA + G G ++ + G FQ+ + + +G GW + Sbjct: 442 ---WASIGLSVSPLPLGSGMQYESSVSLGYLNQSFQNAVMEGIRYGCEQGLYGWNV 494
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.1 bits (62), Expect = 0.040 Identities = 14/65 (21%), Positives = 20/65 (30%), Gaps = 7/65 (10%) Query: 149 AFLPRPDLLIQLDAPQETLR-RRLMDRHAQQPLLEVLLFELGVDRGLRQADISRDIGKCL 207 A L R A Q+ A L+ LG D G + + L Sbjct: 773 ALLTREGAPAAEGAAQKGYSVNTTFVTIAD------LVQALGADPGKSSPMLEGQVRDWL 826 Query: 208 RQDGW 212 ++GW Sbjct: 827 NENGW 831
>CABNDNGRPT#NodO calcium binding signature. Length = 479 Score = 63.1 bits (153), Expect = 9e-13 Identities = 42/178 (23%), Positives = 65/178 (36%), Gaps = 14/178 (7%) Query: 272 PTSTVPSSSDHTFYGTGGADALHGTTGADTMVG----GGYNDTYYVNNVGDKVVELAGGG 327 +T S + F D T + ++ G DT+ + + G Sbjct: 261 NMTTRTGDSVYGFNSNTDRDFYTATDSSKALIFSVWDAGGTDTFDFSGYSNNQRINLNEG 320 Query: 328 NDTVLASVSY--ALSAGSEIEHLAIASKSDTTTMNLKGNEFSQTIDGNAGNNVINGGGGK 385 + + + + +++ G IE+ S +D L GN + G AGN+V+ GG G Sbjct: 321 SFSDVGGLKGNVSIAHGVTIENAIGGSGNDI----LVGNSADNILQGGAGNDVLYGGAGA 376 Query: 386 DVLTGNGGHDYFFFNAA--LKTGNVDKITDFNVAQDKIVLDHSVFTGLQTGALPTSAF 441 D L G G D F + + D I DF DKI D S F + F Sbjct: 377 DTLYGGAGRDTFVYGSGQDSTVAAYDWIADFQKGIDKI--DLSAFRNEGQLSFVQDQF 432
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 525 bits (1354), Expect = 0.0 Identities = 181/331 (54%), Positives = 224/331 (67%), Gaps = 1/331 (0%) Query: 10 IVVTGTAGFIGFHVASRLLRRGLAVIGVDNFTPYYDVGLKEARFAQLCAEPGFTPMQMDL 69 +VTG AGFIGFHV+ RLL G V+G+DN YYDV LK+AR L A+PGF ++DL Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELL-AQPGFQFHKIDL 61 Query: 70 ADQALVKALFSDFQPSHFVHLAAQAGVRYSLADPHAYVQSNIVAFLNVLEGCRHAGVSHL 129 AD+ + LF+ + VRYSL +PHAY SN+ FLN+LEGCRH + HL Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 130 VYASSSSVYGANRSIPFSEHHGASHPVSFYAATKSANECMAHSYSHLFGLPVTGLRFFTV 189 +YASSSSVYG NR +PFS HPVS YAATK ANE MAH+YSHL+GLP TGLRFFTV Sbjct: 122 LYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFFTV 181 Query: 190 YGPWGRPDMAVYTFTHAIAEGRTIEIANAGRVWRDFTYIDDIVEGVVRVLAAPPRPDPDW 249 YGPWGRPDMA++ FT A+ EG++I++ N G++ RDFTYIDDI E ++R+ P D W Sbjct: 182 YGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPHADTQW 241 Query: 250 DSRAAAPATSSAPYRIYNIGNDRPEEINRLIAIIETALGRRAVRVNVPLPPGDVLKTRAD 309 PA S APYR+YNIGN P E+ I +E ALG A + +PL PGDVL+T AD Sbjct: 242 TVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLPLQPGDVLETSAD 301 Query: 310 VSDLRGAVGFAPATALEDGVQRFVEWYRDFH 340 L +GF P T ++DGV+ FV WYRDF+ Sbjct: 302 TKALYEVIGFTPETTVKDGVKNFVNWYRDFY 332
>NAFLGMOTY#Sodium-type flagellar protein MotY precursor signature. Length = 293 Score = 29.7 bits (66), Expect = 0.026 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 8/63 (12%) Query: 303 PLEELSAVVHP-ADWPKLAASAKPSSAVNYDVEIRVRRTDGHIRWVALRG-----RQEEH 356 PLE +VHP + S++ S +N D E+++RR G R V+L R EH Sbjct: 43 PLE--CQLVHPIPSFGDAVFSSRASKKINLDFELKMRRPMGETRNVSLISMPPPWRPGEH 100 Query: 357 GDR 359 DR Sbjct: 101 ADR 103
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 47.9 bits (114), Expect = 1e-08 Identities = 32/155 (20%), Positives = 54/155 (34%), Gaps = 16/155 (10%) Query: 3 RIVIADDHGLYRRGLRLALMAGIPSVEIFEAACFDAVVNLLEEQASIDLAILDLNMPGLF 62 I++ADD R L AL V I A + + DL + D+ MP Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNA--ATLWRWIAAGDG-DLVVTDVVMPDEN 61 Query: 63 NQEVLSDVLAAYPDTRFAIVSGDDSRSEILTALSIGLHGYIVKSQKDEEVVLAVNEILAG 122 ++L + A PD ++S ++ + A G + Y+ K E++ + L Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL-- 119 Query: 123 RIYVPALLSRTSADQRSYAALPSARNPIRQRVGSS 157 + +R + L VG S Sbjct: 120 -----------AEPKRRPSKLEDDSQDGMPLVGRS 143
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 62.5 bits (152), Expect = 3e-13 Identities = 63/354 (17%), Positives = 123/354 (34%), Gaps = 75/354 (21%) Query: 3 RVVIIGGSGHVGTYLVPRLVEAGYEVVNVS----------RGQRAAYTLNAAWKSVEPVV 52 + ++ G +G +G ++ RL+EAG++VV + + R ++ + + Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 53 IDRDTEEKAGTFGEKVRALKADIVVDM-----ISFTLDSTK-----QIVGAL-------R 95 DR+ + + V + ++L++ + G L Sbjct: 62 ADREGMTDL------FASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRH 115 Query: 96 GEVQHFLHCGTIWVYGHNTAIP-ATEDQPKNPFGSYGTQKAEIESWLLNEARRNGFPATV 154 ++QH L+ + VYG N +P +T+D +P Y K E + G PAT Sbjct: 116 NKIQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATG 175 Query: 155 FRPGHIVGPGWEPLNPAGHFDVGVF---SQIARGEPLVLPNLGNETVHHVHADDVAQMVM 211 R + GP P D+ +F + G+ + + N G + DD+A+ ++ Sbjct: 176 LRFFTVYGPWGRP-------DMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAII 228 Query: 212 RAI----------------VSWSNAVGEAFNTVSPQAINLRGYAEALYNWFGHAPRLSYE 255 R + S A +N + + L Y +AL + G + + Sbjct: 229 RLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNML 288 Query: 256 PFDTWKGKQTEENWRATWEHIARSPSHSIAKARNLLGYDPRYSSLQAVYESVEW 309 P +T + ++G+ P + V V W Sbjct: 289 PLQPGDVLETSAD---------------TKALYEVIGFTPETTVKDGVKNFVNW 327
>MALTOSEBP#Maltose binding protein signature. Length = 396 Score = 45.9 bits (108), Expect = 1e-07 Identities = 85/364 (23%), Positives = 141/364 (38%), Gaps = 43/364 (11%) Query: 28 LILGLSTTVALAEGNLNIY---NWGEYTSPELIDKFSKTYNIHVTQTDFDSNDTALAKVR 84 ++ S + EG L I+ + G E+ KF K I VT D + +V Sbjct: 18 MMFSASALAKIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVA 77 Query: 85 QGSSGFDVVVPSQSFIPTYIQEGLLAETNPGQMENAKNLEERWRNPAFDPGRKYSVPWLW 144 G D++ + Y Q GLLAE P + K W ++ G+ + P Sbjct: 78 ATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYN-GKLIAYPIAV 136 Query: 145 YTSGVSVNTSVFKGDINTWKVI--LDPPAELKGKINIVPEMNDIMFA----------AIK 192 + N + TW+ I LD + KGK ++ + + F A K Sbjct: 137 EALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFK 196 Query: 193 FEGGTWCTSD--------KALLTKVRDRLLEAKKSWLSIDYS-GTLKMASGDVSASLD-- 241 +E G + D KA LT + D L++ K DYS G+ + +++ Sbjct: 197 YENGKYDIKDVGVDNAGAKAGLTFLVD-LIKNKHMNADTDYSIAEAAFNKGETAMTINGP 255 Query: 242 WSGSALKRRTQNHSIAY-----GLPKEGFTYGSDNVVVLKDAPNLENAKLF-QNFIMAPE 295 W+ S + N+ + G P + F G + + +PN E AK F +N+++ E Sbjct: 256 WAWSNIDTSKVNYGVTVLPTFKGQPSKPFV-GVLSAGINAASPNKELAKEFLENYLLTDE 314 Query: 296 NAALNSTFAKYGAAIIGAEKYYSDDMKGAPELTIPDDMKSKGELLTLCDPKITQLYSRIW 355 + GA A K Y +++ P + + KGE++ P I Q+ S W Sbjct: 315 GLEAVNKDKPLGAV---ALKSYEEELAKDPRIAATMENAQKGEIM----PNIPQM-SAFW 366 Query: 356 QDVQ 359 V+ Sbjct: 367 YAVR 370
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.8 bits (69), Expect = 0.011 Identities = 9/31 (29%), Positives = 16/31 (51%) Query: 51 TLLGPSGCGKTTLLRLIGGFEYPTAGTILLG 81 L G G GK+TL+ + G ++ + +G Sbjct: 600 VLEGTGGIGKSTLINTLVGLDFFSDTHFDIG 630
>PF06580#Sensor histidine kinase Length = 349 Score = 30.6 bits (69), Expect = 0.007 Identities = 16/98 (16%), Positives = 37/98 (37%), Gaps = 12/98 (12%) Query: 53 WGGFSLRWFQ--SAANNQQVISASILSLKLAAISATLSTALATLAALAMSRTPRFRGWTL 110 WG ++L F S + ++ S I ++ ++ + L+ A + + +GW L Sbjct: 20 WGVYTLTGFGFASLYGSPKLHSM-IFNIAISLMGLVLTHAYRSF--------IKRQGW-L 69 Query: 111 AYSAISVPLMVPEIVTAVALLIVTATIRGWTGYSGLGY 148 + + L V + ++ A W + + Sbjct: 70 KLNMGQIILRVLPACVVIGMVWFVANTSIWRLLAFINT 107
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 29.5 bits (66), Expect = 0.041 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 1/62 (1%) Query: 306 LLIPADRHAEALDIARRVAAATRVGDPSSEDTDMGPVISQQQFDKIQRMIGLGIEEGATL 365 LLIP D + + V A +G D G I++Q F +++IGL E G T+ Sbjct: 51 LLIPKDYKGQGSSLNDLVRTADELGIEVQYDEKNGTAITKQVFGTAEKLIGL-TERGVTI 109 Query: 366 VA 367 A Sbjct: 110 FA 111
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 137 bits (347), Expect = 1e-41 Identities = 82/259 (31%), Positives = 129/259 (49%), Gaps = 12/259 (4%) Query: 15 MDLFKLDGDVALVTGAGSGIGQAIAIGLAEAGADVACFGHASKGGLEETAQQVTTLGRKA 74 M+ ++G +A +TGA GIG+A+A LA GA +A + + LE+ + R A Sbjct: 1 MNAKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEK-LEKVVSSLKAEARHA 59 Query: 75 LVLTGTVTSQSDLAAAIDRVEAELGALTVAVNNAGIAGSEPAETLSLEKWQKVHEVNVAG 134 V + + R+E E+G + + VN AG+ +LS E+W+ VN G Sbjct: 60 EAFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTG 119 Query: 135 VFLSCQAEARKMLARRKGSIINIASMSGTIVNRGLTQAHYNSSKAAVIHMSKSLAMEWAD 194 VF + ++ ++ M+ RR GSI+ + S + + A Y SSKAA + +K L +E A+ Sbjct: 120 VFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSM--AAYASSKAAAVMFTKCLGLELAE 177 Query: 195 RGLRVNVVSPGYTLTPMNKR---PEVAEEIKI------FKRDTPMGRMAAPEEMVGPTVF 245 +R N+VSPG T T M E E I FK P+ ++A P ++ +F Sbjct: 178 YNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLF 237 Query: 246 LASRASSFVTGLDLIVDGG 264 L S + +T +L VDGG Sbjct: 238 LVSGQAGHITMHNLCVDGG 256
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 31.7 bits (72), Expect = 0.003 Identities = 24/152 (15%), Positives = 45/152 (29%), Gaps = 33/152 (21%) Query: 83 QVGAVVLGTLFLALSSYIEVPMVPVPV--TMQTFAVTLIGALYGWRLGAVTIAAWLVEGA 140 Q+ ++G + + +I + + F++T++ A+ L A+ + L Sbjct: 437 QIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALC--- 493 Query: 141 AGFPVLAGGAAGVAHFVGPTGGYLFAFPITGALVGW-------LAERGWNGNRVVLAFAA 193 A + P G GW N +L Sbjct: 494 -------------ATLLKPVSA--EHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTG 538 Query: 194 MLLGNLACLVLGTAWLAVMIGTEKAITFGFLP 225 L A +V G L + + + FLP Sbjct: 539 RYLLIYALIVAGMVVLFLRLPSS------FLP 564
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 43.0 bits (101), Expect = 8e-07 Identities = 22/127 (17%), Positives = 46/127 (36%), Gaps = 4/127 (3%) Query: 482 LELQPDQPQVLNYLGYSWVDMNTNLKEGLAMIQKAVDLRPSDGYIVDSLGWAYFRLGRFD 541 E+ D + L L ++ ++ + Q L D LG +G++D Sbjct: 29 NEISSDTLEQLYSLAFNQYQSG-KYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYD 87 Query: 542 DAVREMERAVSLKPEDPVLNDHLGDAYWRVGRKLEATFQWNQARDL---KPDPDVLATLQ 598 A+ + ++P H + + G EA A++L K + L+T Sbjct: 88 LAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELIADKTEFKELSTRV 147 Query: 599 QKLMKGL 605 +++ + Sbjct: 148 SSMLEAI 154 Score = 37.6 bits (87), Expect = 4e-05 Identities = 30/139 (21%), Positives = 46/139 (33%), Gaps = 12/139 (8%) Query: 354 QLAAVAEQLKDGEGAIALYRRIPDSSPLKELSDL-QLGLNLADLDRHDEAITHLKAFVDA 412 A+ LK G G IA+ I L L L N ++++A +A Sbjct: 11 YQLAMESFLKGG-GTIAMLNEISS----DTLEQLYSLAFNQYQSGKYEDAHKVFQALCVL 65 Query: 413 HPNDMRAYLALGGVYSSKEDFRSAASLYDKAVEA-LKTPTAANWNIFYQRGIAYERLKEW 471 D R +L LG + + A Y +K P + + E Sbjct: 66 DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIKEPRF-----PFHAAECLLQKGEL 120 Query: 472 PKAEPNFRKALELQPDQPQ 490 +AE A EL D+ + Sbjct: 121 AEAESGLFLAQELIADKTE 139 Score = 30.7 bits (69), Expect = 0.011 Identities = 25/137 (18%), Positives = 40/137 (29%), Gaps = 7/137 (5%) Query: 316 EILLDLATALNRGGGEPFVRLYLQYALALRPDSDAALVQLAAVAEQLKDGEGAIALYRRI 375 E L + + L GG + + D+ L LA Q E A +++ + Sbjct: 10 EYQLAMESFLKGGGT-------IAMLNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQAL 62 Query: 376 PDSSPLKELSDLQLGLNLADLDRHDEAITHLKAFVDAHPNDMRAYLALGGVYSSKEDFRS 435 L LG + ++D AI + R K + Sbjct: 63 CVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAE 122 Query: 436 AASLYDKAVEALKTPTA 452 A S A E + T Sbjct: 123 AESGLFLAQELIADKTE 139
>PERTACTIN#Pertactin signature. Length = 922 Score = 34.3 bits (78), Expect = 0.002 Identities = 33/114 (28%), Positives = 44/114 (38%), Gaps = 9/114 (7%) Query: 671 QNSGQNPPNGKFKKL-HNQGGGQANAQANGRGNEAQGNGNGPKFHRLPASGNG-----GG 724 +NSG P +G L G A + + G +RL A+GNG G Sbjct: 509 RNSGSEPASGNTMLLVQTPRGSAATFTLANKDGKVDI---GTYRYRLAANGNGQWSLVGA 565 Query: 725 NVQQKFKVNNGNPQLRVQGQPKPRRPEFHAQPNQPVQRQAQPRPPQPPAVKKPS 778 K P+P +P QP QP QRQ + PQPPA ++ S Sbjct: 566 KAPPAPKPAPQPGPQPGPQPPQPPQPPQPPQPPQPPQRQPEAPAPQPPAGRELS 619
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 28.8 bits (64), Expect = 0.004 Identities = 21/102 (20%), Positives = 32/102 (31%), Gaps = 4/102 (3%) Query: 14 ADT-QSAPGGFNGVSTIASLLTSIALAGFIATGVAAATTTTAPAA---ATTAAPAKKPAA 69 ADT A G + + + IA A +T+A AA A+ A P + Sbjct: 263 ADTRTKAAAGVELTTKVLGNVGKGISQYIIAQRAAQGLSTSAAAAGLIASAVTLAISPLS 322 Query: 70 SAMTPQKTAISKQCSALADAKKLHGKAREKFRADCKKNGGKA 111 K + + + K G + A K G Sbjct: 323 FLSIADKFKRANKIEEYSQRFKKLGYDGDSLLAAFHKETGAI 364
>PF06776#Invasion associated locus B Length = 214 Score = 183 bits (467), Expect = 2e-61 Identities = 87/165 (52%), Positives = 118/165 (71%) Query: 29 AMFLAALSAAGLFVAGQANAAQPSGTVRSTHGAWSIICDTPAGATSEQCVMMQNVVAEDR 88 A + A + A G ++ A G VRS HG W I CDTP GA +EQC ++Q+VVAEDR Sbjct: 50 ARLMLAGAMAIALSFGWSDRADAQGAVRSVHGDWQIRCDTPPGAKAEQCALIQSVVAEDR 109 Query: 89 PEMGLSVVVLRTADNKAEILRVLAPLGVLLPNGLGLNVDGKDIGRAYFVRCFQDGCYAEV 148 GL+V++L+TAD K++++RV+APLGVLLP+GLGL +D D+GRA FVRC +GC AEV Sbjct: 110 SNAGLTVIILKTADQKSKLMRVVAPLGVLLPSGLGLKLDNVDVGRAGFVRCLPNGCVAEV 169 Query: 149 ILEKPLLDTLKTGTSATFIVFQTPEEGIGIPVDLKGFADGFAALP 193 +++ LL L+T +ATFI+F+TPEEGIG P+ L G +G+ LP Sbjct: 170 VMDDKLLGQLRTAKTATFIIFETPEEGIGFPLSLNGIGEGYDKLP 214
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 546 bits (1408), Expect = 0.0 Identities = 191/339 (56%), Positives = 240/339 (70%), Gaps = 6/339 (1%) Query: 1 MKVLVTGAAGFIGYHVARRLLERGDEVVGIDSVNDYYDPRIKQARLRLLAEASRGSNAGY 60 MK LVTGAAGFIG+HV++RLLE G +VVGID++NDYYD +KQARL LLA+ G+ Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQP------GF 54 Query: 61 HFIHGNLAEREIVDGCFADHDFDRVIHLAAQAGVRYSLENPRAYVESNIVAFTNMLEACR 120 F +LA+RE + FA F+RV + VRYSLENP AY +SN+ F N+LE CR Sbjct: 55 QFHKIDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCR 114 Query: 121 NAGMAHLTYASTSSVYGANTDMPFSEHRPADHPLQFYAATKRANELMAHSYSHLFGLPTT 180 + + HL YAS+SSVYG N MPFS DHP+ YAATK+ANELMAH+YSHL+GLP T Sbjct: 115 HNKIQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPAT 174 Query: 181 GLRFFTVYGPWGRPDMALFLFTRSILAGEPIKLFNNGNHTRDFTYIDDIAEGVIRASDSP 240 GLRFFTVYGPWGRPDMALF FT+++L G+ I ++N G RDFTYIDDIAE +IR D Sbjct: 175 GLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVI 234 Query: 241 AAGNPAWDSGHPDPATSSAPWRIFNIGNNNPVKLTAYVEALESALGRKAVIELLPLQAGD 300 + W PA S AP+R++NIGN++PV+L Y++ALE ALG +A +LPLQ GD Sbjct: 235 PHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLPLQPGD 294 Query: 301 VPDTFADTTALQEAVGYRPGTSVSDGVGRFVEWYKAYFG 339 V +T ADT AL E +G+ P T+V DGV FV WY+ ++ Sbjct: 295 VLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDFYK 333
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 159 bits (403), Expect = 6e-48 Identities = 81/357 (22%), Positives = 144/357 (40%), Gaps = 52/357 (14%) Query: 1 MNFLVTGGAGFIGSAVCRHLCANPAYRVTNLDKLT--YAGNLASLRQIENAH-NYRFAHA 57 M +LVTG AGFIG V + L ++V +D L Y +L R A ++F Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAG-HQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKI 59 Query: 58 DICDERAVLDIMRRDDIDIVMNLAAESHVDRSIDGPGAFIETNIVGTYRILNAALEYWRG 117 D+ D + D+ + V V S++ P A+ ++N+ G IL Sbjct: 60 DLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGC------ 113 Query: 118 LPDDRKSRFRFHHV--STDEVFGD---LPFDGGMFVEETPYAPSSPYSASKAASDHLVRA 172 R ++ + H + S+ V+G +PF +++ P S Y+A+K A++ + Sbjct: 114 ----RHNKIQ-HLLYASSSSVYGLNRKMPFS----TDDSVDHPVSLYAATKKANELMAHT 164 Query: 173 WHETYGLPVVLSNCSNNYGPYHFPEKLIPLVILNALDEKPLPVYGAGANVRDWLFVEDHA 232 + YGLP YGP+ P+ + L+ K + VY G RD+ +++D A Sbjct: 165 YSHLYGLPATGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIA 224 Query: 233 ----RALELV--------------ATKGTPGESYNVGGNSERTNLAVVETICDLLDIRRP 274 R +++ A P YN+G +S + ++ + D L I Sbjct: 225 EAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAK 284 Query: 275 RAGGRCYRDLISFVTDRPGHDRRYAIDASKIGRELGWAPSENFDSGLARTVDWFLDN 331 + + + +PG + D + +G+ P G+ V+W+ D Sbjct: 285 K----------NMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDF 331
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 55.2 bits (133), Expect = 8e-11 Identities = 53/240 (22%), Positives = 90/240 (37%), Gaps = 46/240 (19%) Query: 1 MRLAVTGRDG----QVVSSLLEAGQFA-GVDVIA--------------IGRP-----QLD 36 M+ VTG G V LLEAG G+D + + +P ++D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 37 LANPDTVIEAIAAARPDIVVSAAAYTAVDQAEDEPDLAFRVNAVGAGKVAQAAARLGVP- 95 LA+ + + + A+ + V + AV + + P N G + + + Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 96 VIHLSTDYVFDGSASGAYVETDATA-PASVYGASKLAGEQTVAAAGPRHL------ILRT 148 +++ S+ V+ + + D+ P S+Y A+K A E HL LR Sbjct: 121 LLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYS--HLYGLPATGLRF 178 Query: 149 AWVYSPFGK------NFVKTMLRLAADRDEISVVAD--QWGNPSSALDIADAILHAAATL 200 VY P+G+ F K ML + I V + + DIA+AI+ + Sbjct: 179 FTVYGPWGRPDMALFKFTKAML----EGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVI 234
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 159 bits (405), Expect = 2e-48 Identities = 78/364 (21%), Positives = 132/364 (36%), Gaps = 57/364 (15%) Query: 6 VVTGGAGFIGCALSTKLANRFDRVVVIDSLHP--QIHAERKRPADL-DPRVELVVADVTE 62 +VTG AGFIG +S +L +VV ID+L+ + ++ R L P + D+ + Sbjct: 4 LVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDLAD 63 Query: 63 ASTWVPALETIRPEVVVHLAAETGTGQSLTEASRHAIANVLGTTRMLDAFATASHVPERF 122 + E V SL +A +N+ G +L+ + Sbjct: 64 REGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNK--IQHL 121 Query: 123 VLASSRAVYGEGAWRSRKAGEITYPGQRSKQQLERAEWDFPGLEPLPMDAEKTIPNPTSI 182 + ASS +VYG +P + ++ +P S+ Sbjct: 122 LYASSSSVYGLN-------------------------------RKMPFSTDDSVDHPVSL 150 Query: 183 YGATKLTQEQILRAWALSFGTAVNVLRLQNVYGPGQSLTNSYTGIVSLFIRMAKEGKSIP 242 Y ATK E + ++ +G LR VYGP + F + EGKSI Sbjct: 151 YAATKKANELMAHTYSHLYGLPATGLRFFTVYGPWGRPDMAL----FKFTKAMLEGKSID 206 Query: 243 IYEDGDIGRDFVFIDDVASALDKATAT-------------DLSQSLA----YDVGTGSKT 285 +Y G + RDF +IDD+A A+ + + S+A Y++G S Sbjct: 207 VYNYGKMKRDFTYIDDIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPV 266 Query: 286 TVLDLARIVAKRYEAPEPHVNGMFRNGDVRCAVANIDRTVRELEWRPLKSVDEGIGQLSE 345 ++D + + + GDV A+ + + P +V +G+ Sbjct: 267 ELMDYIQALEDALGIEAKKNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVN 326 Query: 346 WVDS 349 W Sbjct: 327 WYRD 330
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 30.4 bits (68), Expect = 0.015 Identities = 22/112 (19%), Positives = 37/112 (33%), Gaps = 4/112 (3%) Query: 265 DEDNGLLDQLDIMRTRFDDACETFSAAMATEELAVVQLRGELSTRSTETERARQENSKLA 324 + L + + R D + AM ++ T E ++L Sbjct: 211 AKIKTLEAEKAALAARKADLEKALEGAMNFST----ADSAKIKTLEAEKAALEARQAELE 266 Query: 325 SFLEQQSLEVRGLAAERDALVGTRGTLIAERDALVNAQASLIAERDALLRDM 376 LE +A+ L + L AE+ L + L A R +L RD+ Sbjct: 267 KALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDL 318
>PF05272#Virulence-associated E family protein Length = 892 Score = 32.0 bits (72), Expect = 0.002 Identities = 12/37 (32%), Positives = 17/37 (45%) Query: 60 LGLVGPNGAGKTTLLKVLYGIYQPSGGTISITGKVDA 96 + L G G GK+TL+ L G+ S I D+ Sbjct: 599 VVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTGKDS 635
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 61.6 bits (149), Expect = 5e-14 Identities = 33/191 (17%), Positives = 61/191 (31%), Gaps = 13/191 (6%) Query: 7 SDKRQHVVETAYALFKRAGFHATGVDRIIAEADVAKMTMYRHFPSKDELIVAVLDYRARR 66 + RQH+++ A LF + G +T + I A V + +Y HF K +L + + Sbjct: 10 QETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESN 69 Query: 67 FDDQLDKLAQKSI-TPEQKIAEIFDWHGRW---------FRSPDFHGCLFAHALAEFGDP 116 + + K P + EI FH C F +A Sbjct: 70 IGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQA 129 Query: 117 GHPVFQAVARQKNGLRQRMRS---ILSEVMPRGRAENVAATLLMLIEGATLMAQMGQADT 173 + + + + +++M R A + + L+E Q Sbjct: 130 QRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQSFDLKK 189 Query: 174 ALREARKTALD 184 R+ L+ Sbjct: 190 EARDYVAILLE 200
>TETREPRESSOR#Tetracycline repressor protein signature. Length = 218 Score = 27.2 bits (60), Expect = 0.019 Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 1/45 (2%) Query: 9 CDVGFYDEMAGVATDLLTEFNQGVVKLKRETPGVVDPEQPWMPVE 53 + GF A ++ F G V ++E + ++P P E Sbjct: 121 TENGFSLRDGLYAISAVSHFTLGAVLEQQEHTAAL-TDRPAAPDE 164
>PF04183#IucA / IucC family Length = 580 Score = 27.5 bits (61), Expect = 0.020 Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 1/25 (4%) Query: 4 EEYIRLP-HRWQWGYTDCTLFAADW 27 ++ LP H WQW T F AD+ Sbjct: 213 HNWLPLPVHPWQWQQKIATDFIADF 237
>SECA#SecA protein signature. Length = 901 Score = 27.9 bits (62), Expect = 0.014 Identities = 12/84 (14%), Positives = 27/84 (32%), Gaps = 5/84 (5%) Query: 32 RDIKESDARAALSYEQSEQRAAASRAKMYQKTDELVERVTATESAVSKLNADMTSVKEVT 91 R ++ + + S ++ KT E R+ E + + V+E + Sbjct: 16 RTLRRMRKVVNIINAMEPEMEKLSDEELKGKTAEFRARLEKGEVLENLIPEAFAVVREAS 75 Query: 92 AEVTRWKLMGLGALGVTGMAAAAL 115 ++ G+ V + L Sbjct: 76 -----KRVFGMRHFDVQLLGGMVL 94
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 74.5 bits (183), Expect = 1e-15 Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 1/119 (0%) Query: 1268 VMVVEDEDRVRAVSAEALRELGYSVVEASGPNEAIKMIEAGQQLSLLFTDVVMPEMSGRQ 1327 ++V +D+ +R V +AL GY V S + I AG L+ TDVVMP+ + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDG-DLVVTDVVMPDENAFD 64 Query: 1328 LVDILRRGNPKLKVLYTTGYTRNAIVHNGILDPVTQLLPKPFSLEDLAEKVRTILDDPS 1386 L+ +++ P L VL + LPKPF L +L + L +P Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123
>PF07675#Cleaved Adhesin Length = 1358 Score = 25.4 bits (55), Expect = 0.044 Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 5/41 (12%) Query: 26 MAEDMKDGRN----LMRVDADGNILWKALPPATQDCFTGMN 62 ++E ++G + D DGN W PP F G N Sbjct: 633 LSESFENGIPASWKTIDADGDGNN-WTTTPPPGGSSFAGHN 672
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 29.2 bits (65), Expect = 0.024 Identities = 27/138 (19%), Positives = 52/138 (37%), Gaps = 20/138 (14%) Query: 162 MLAMNRVEFRVARLLIELTPRSQLTNPLARRKRYEGISPAQMAAMEADIAEVSHDYLSAA 221 ++A+N+ +F + EL RS + L +G Q +++ A + + A Sbjct: 873 LVAINQHDFGTIESVFELANRSNDIDTLYANSGAQGRDLLQTLLIDSHDAGYARTMIDAT 932 Query: 222 STH--------GSEMLNLIAATSYFDRLLN----------NPKLVRYLARNFARQLEVF- 262 S + + LN IA+ + L N +LV L+R ++ F Sbjct: 933 SANEITKQLNTATTTLNNIASLEHKTSGLQTLSLSNAMILNSRLVN-LSRRHTNHIDSFA 991 Query: 263 QNLLDFREARYKEHPPQA 280 + L ++ R+ A Sbjct: 992 KRLQALKDQRFASLESAA 1009
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 128 bits (322), Expect = 5e-38 Identities = 68/256 (26%), Positives = 118/256 (46%), Gaps = 8/256 (3%) Query: 6 KRTLVTGGSDGIGLAIAEAFLSEGADVLIVGRDAAKLEAARQKLAALGQAGAVETSSADL 65 K +TG + GIG A+A S+GA + V + KLE L A + E AD+ Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHA--EAFPADV 66 Query: 66 ATSLGVATVVEQVKETGRPLDIPINNAGVADLVPFESVSEAQFQHSFALNVAAAFFLTQG 125 S + + +++ P+DI +N AGV S+S+ +++ +F++N F ++ Sbjct: 67 RDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRS 126 Query: 126 LLPHFGA--GASIINISSYFARKMIPKRPSSVYSLSKGALNSLTRSLAFELGPRGIRVNA 183 + + SI+ + S A +P+ + Y+ SK A T+ L EL IR N Sbjct: 127 VSKYMMDRRSGSIVTVGSNPAG--VPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNI 184 Query: 184 IAPGTVDTAMRRK--TVDNLPAEAKAELKAYVERSYPLGRIGRPDDLAGMAVYLASDEAA 241 ++PG+ +T M+ +N + + PL ++ +P D+A ++L S +A Sbjct: 185 VSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAG 244 Query: 242 WTSGGIFAVDGGYTAG 257 + VDGG T G Sbjct: 245 HITMHNLCVDGGATLG 260
>PF06580#Sensor histidine kinase Length = 349 Score = 37.9 bits (88), Expect = 5e-05 Identities = 26/163 (15%), Positives = 51/163 (31%), Gaps = 48/163 (29%) Query: 214 LDHVKA---IAKNGFAKKIRILEDYDPSL-----PPVFANRDQLIQVFLNLVKNAAEAIG 265 L V + +A F +++ +P++ PP+ L+Q LV+N + Sbjct: 222 LTVVDSYLQLASIQFEDRLQFENQINPAIMDVQVPPM------LVQT---LVENGIK--- 269 Query: 266 TDPHGEIVLSTAFRPG-IRVSVPGTQDRVSLPLEFCVRDNGPGVSEDILPILFDPFITTK 324 HG ++ + G I + + V + G ++ Sbjct: 270 ---HG---IAQLPQGGKILLKGTKDNGT----VTLEVENTGSLALKN------------T 307 Query: 325 PNGSGLGLALV----AKIVGEHGGIIECESTPRGTTFRILMPA 363 +G GL V + G I + +L+P Sbjct: 308 KESTGTGLQNVRERLQMLYGTEAQI-KLSEKQGKVNAMVLIPG 349
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 588 bits (1517), Expect = 0.0 Identities = 367/482 (76%), Positives = 420/482 (87%), Gaps = 1/482 (0%) Query: 4 RGNILVADDDAAIRTVLNQALSRVGHEVRVTSNASTLWRWVAAGEGDLVITDVVMPDENA 63 ILVADDDAAIRTVLNQALSR G++VR+TSNA+TLWRW+AAG+GDLV+TDVVMPDENA Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 64 FDMLPRIKKARPELPVIVMSAQNTFMTAIRASETGAYEYLPKPFDLTELLNIVNRALSEP 123 FD+LPRIKKARP+LPV+VMSAQNTFMTAI+ASE GAY+YLPKPFDLTEL+ I+ RAL+EP Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122 Query: 124 RRPKIDARPDEQPETMPLVGRSAAMQDIYRMLARMMQTDLTVMISGESGTGKELVARALH 183 +R + D+ + MPLVGRSAAMQ+IYR+LAR+MQTDLT+MI+GESGTGKELVARALH Sbjct: 123 KR-RPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALH 181 Query: 184 EYGRRRGGPFVAINMAAIPRDLIESELFGHEKGAFTGAQNRSTGRFEQAEGGTLFLDEIG 243 +YG+RR GPFVAINMAAIPRDLIESELFGHEKGAFTGAQ RSTGRFEQAEGGTLFLDEIG Sbjct: 182 DYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIG 241 Query: 244 DMPMEAQTRLLRVLQQGEYTTVGGRTPIKTDVRIVAATNKDLRTLINQGLFREDLFYRLN 303 DMPM+AQTRLLRVLQQGEYTTVGGRTPI++DVRIVAATNKDL+ INQGLFREDL+YRLN Sbjct: 242 DMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLN 301 Query: 304 VVPLRLPALRERSEDVPDLVRHFFKLGEMEGLQTKRISSGGIELMKRYPWPGNVRELENL 363 VVPLRLP LR+R+ED+PDLVRHF + E EGL KR +ELMK +PWPGNVRELENL Sbjct: 302 VVPLRLPPLRDRAEDIPDLVRHFVQQAEKEGLDVKRFDQEALELMKAHPWPGNVRELENL 361 Query: 364 VRRLAALYSQDEISAEIIEAELKTGERPVVPGGGNLIPDDLSIGQAVEHFLQRYFASFAG 423 VRRL ALY QD I+ EIIE EL++ LSI QAVE +++YFASF Sbjct: 362 VRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFGD 421 Query: 424 ELPPAGLYQRILSEVEYPLVLASMTATRGNQIKAAELLGLNRNTLRKKIRELGVNVYKSS 483 LPP+GLY R+L+E+EYPL+LA++TATRGNQIKAA+LLGLNRNTLRKKIRELGV+VY+SS Sbjct: 422 ALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGVSVYRSS 481 Query: 484 RP 485 R Sbjct: 482 RS 483
>PF06580#Sensor histidine kinase Length = 349 Score = 38.7 bits (90), Expect = 7e-05 Identities = 25/154 (16%), Positives = 52/154 (33%), Gaps = 25/154 (16%) Query: 534 IIRQVEDIGRMVDEFSAFARM--PKPEMKAIDLRESLREASFLVEVSRA----DITFERI 587 I+ M+ S R + + L + L ++++ + FE Sbjct: 186 ILEDPTKAREMLTSLSELMRYSLRYSNARQVSLADELTVVDSYLQLASIQFEDRLQFE-N 244 Query: 588 FGNEPLKGTFDSRLLAQAFGNVIKNAAEAIDGLEQKDGSHGIIRIQAGRQNGAIRIDVID 647 N + +L Q ++N G+ Q G I ++ + NG + ++V + Sbjct: 245 QINPAIMDVQVPPMLVQTL---VENGI--KHGIAQLP-QGGKILLKGTKDNGTVTLEVEN 298 Query: 648 NGKGLPRENRQRLLEPYMTTREKGTGLGLAIVKK 681 G + ++ TG GL V++ Sbjct: 299 TGSLALKNTKE------------STGTGLQNVRE 320
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 418 bits (1077), Expect = e-145 Identities = 164/478 (34%), Positives = 256/478 (53%), Gaps = 31/478 (6%) Query: 2 ASDILIVDDEEDIRELVAGILSDEGHETRTAFDADSALAAIADRAPRLIFLDIWLQGSRL 61 + IL+ DD+ IR ++ LS G++ R +A + IA L+ D+ + Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPD--E 60 Query: 62 DGLALLDEIKTMHPTLPVVMISGHGNIETAVSAIRRGAYDFIEKPFKADRLILIAERALE 121 + LL IK P LPV+++S TA+ A +GAYD++ KPF LI I RAL Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 122 TSKLRREVSDLKQRSGETFDLIGMSSAMSQLRQTIERVAPTNSRVMIIGPSGSGKELAAR 181 +R S L+ S + L+G S+AM ++ + + R+ T+ +MI G SG+GKEL AR Sbjct: 121 E--PKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVAR 178 Query: 182 AIHTLSARKGAPFVTLSAANITPERMEIELFGTE----SNGVERKVGALEEAHRGILYID 237 A+H R+ PFV ++ A I + +E ELFG E + R G E+A G L++D Sbjct: 179 ALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLD 238 Query: 238 EVADMPRETQNKILRVLVEQQFERVGGTKRVKVDVRIISSTSQNLEAMIADGRFREDLYH 297 E+ DMP + Q ++LRVL + ++ VGG ++ DVRI+++T+++L+ I G FREDLY+ Sbjct: 239 EIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYY 298 Query: 298 RLAVVPVMVPGLAERREDIPYLVDNFMKQIARQAGIKPRRIGDDALAVLQAHNWPGNVRQ 357 RL VVP+ +P L +R EDIP LV +F++Q ++ G+ +R +AL +++AH WPGNVR+ Sbjct: 299 RLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKE-GLDVKRFDQEALELMKAHPWPGNVRE 357 Query: 358 LRNNVERLMILARGDDVDAPITADLLPSEI---------GDVMPRTPNQSDQHIMALP-- 406 L N V RL L D + I + L SEI + +Q+ + M Sbjct: 358 LENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFA 417 Query: 407 -----------LREAREQFEKDYLIAQINRFGGNISKTAEFIGMERSALHRKLKSLGV 453 + E ++A + GN K A+ +G+ R+ L +K++ LGV Sbjct: 418 SFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGV 475
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 30.6 bits (69), Expect = 0.012 Identities = 61/341 (17%), Positives = 118/341 (34%), Gaps = 42/341 (12%) Query: 29 FISLGTHLPYFPLWLQ---AKGFHAEQIAVILAAPMFLRVVTTPLLTTLADRARDRANVY 85 + +G +P P L+ ++LA ++ P+L L+DR R + Sbjct: 18 AVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLL 77 Query: 86 VALVAASLLLSAGYFLTPTYAMVLAVSLGLTIVWTPHSPIADSLALSGVRRFGSNYASMR 145 V+L A++ Y + T + + +G + + A + A G A Sbjct: 78 VSLAGAAV----DYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADITDGDERARHF 133 Query: 146 KWGSICYLCANVAG---GFILAATGPQAVPVIIVLALAA-ALVAGLLAPRMGRPRKASPL 201 + S C+ VAG G ++ P A P AL + G + PL Sbjct: 134 GFMSACFGFGMVAGPVLGGLMGGFSPHA-PFFAAAALNGLNFLTGCFLLPESHKGERRPL 192 Query: 202 SAAEIQHAAPSLFN------AYFLYFTFGVGIITASHAFLYGFVSIY---WKSIGISDSV 252 + A + A + F + ++ A L+ W + I S+ Sbjct: 193 RREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISL 252 Query: 253 VGLLWAWGVVSEVCMFLLFNRIFASVSVVKVMVIAGIGSIVRWILF------PLVWPLGL 306 G++ + ++ + A + + +++ I +IL + +P+ + Sbjct: 253 AAF----GILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMV 308 Query: 307 GIAGFFAVQSLHSVSVAMVLIGLQKMIAETVSEERTGAAQG 347 +A + + LQ M++ V EER G QG Sbjct: 309 LLASG-----------GIGMPALQAMLSRQVDEERQGQLQG 338
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 72.0 bits (176), Expect = 4e-17 Identities = 61/253 (24%), Positives = 95/253 (37%), Gaps = 4/253 (1%) Query: 4 GIRGKKAIVCASSKGLGKGCAMALAEAGCDIVVNGRNAE--LVAKTAAELRERFDVTVTE 61 GI GK A + +++G+G+ A LA G I N E ++ + R Sbjct: 5 GIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPA 64 Query: 62 VVGDVSKPDVQKALLAACPEP-DILVNNNGGPPLRDFRELDRAKILEGVTQNMVTPIELV 120 V D + D A + P DILVN G L + + N Sbjct: 65 DVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 121 QAVLDGMAKRGFGRIVNITSLSVYVPIPGLDLSSGARAGLTSFLAGVARTVIDRNVTINS 180 ++V M R G IV + S VP + + ++A F + + + N+ N Sbjct: 125 RSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNI 184 Query: 181 LLPGKLDTDRLRGPHEAGTSEAPAAAAARKTRISADVPAKRLGTPEEFGQICAFLCSVHA 240 + PG +TD + +T +P K+L P + FL S A Sbjct: 185 VSPGSTETDMQWSLWADENGAEQVIKGSLET-FKTGIPLKKLAKPSDIADAVLFLVSGQA 243 Query: 241 GYLTGQNIPVDGG 253 G++T N+ VDGG Sbjct: 244 GHITMHNLCVDGG 256
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 43.0 bits (101), Expect = 4e-07 Identities = 52/213 (24%), Positives = 77/213 (36%), Gaps = 36/213 (16%) Query: 18 ALAADAISAEPA-TAHDWSGVYVGGQIGYGFGKTDATYNLPNTPTIRGSQDYDTDGFLGG 76 ALA A A+ A + W Y G ++G+ D + N PT G GG Sbjct: 11 ALAGFATVAQAAPKDNTW---YTGAKLGWSQYH-DTGFINNNGPTHENQLGA---GAFGG 63 Query: 77 VQIGYNYQINSAVLGVEADVSGADIKGHSDEITSGLGDRYDTKVDWFGTLRARAGYAFDR 136 YQ+N +G E G D G S Y + L A+ GY Sbjct: 64 ------YQVN-PYVGFEM---GYDWLGRMPYKGSVENGAYKAQG---VQLTAKLGYPITD 110 Query: 137 TL-IYGTGGLAFGSVENRYVDGPFDTFSEKNTKVGWTIGAGLEQAITDHWSAKFEYQYV- 194 L IY G + +T V G+E AIT + + EYQ+ Sbjct: 111 DLDIYTRLGGMV--WRADTKSNVYG--KNHDTGVSPVFAGGVEYAITPEIATRLEYQWTN 166 Query: 195 DLRD-QTIDYAPNSNTTFDNTFNAVKIGMNYKF 226 ++ D TI P++ + +G++Y+F Sbjct: 167 NIGDAHTIGTRPDNGM--------LSLGVSYRF 191
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 29.9 bits (67), Expect = 0.013 Identities = 12/102 (11%), Positives = 21/102 (20%), Gaps = 9/102 (8%) Query: 308 PPPPQQSLPETEAAPLVPVPASKPDPGADPETLANREG---------GLDREAVKRLSAK 358 PP P P P P+P + + + E KR Sbjct: 61 EPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKP 120 Query: 359 PVTSPVSALPPEQRKVRVVGPTFLPDPSAAINLQAPAPKAVQ 400 + P S ++ + + Sbjct: 121 VESRPASPFENTAPARPTSSTATAATSKPVTSVASGPRALSR 162
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 36.1 bits (83), Expect = 2e-05 Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 4/93 (4%) Query: 33 DEFHHRAFANSLCAAAYIDGKQVGFGRAITDRTVFAYLADIIVWPQNRGQGIGQRLVQAL 92 + + Y++ +G + ++ +A + DI V R +G+G L+ Sbjct: 55 MDVSYVEEEGKAAFLYYLENNCIGRIKIRSNWNGYALIEDIAVAKDYRKKGVGTALLHKA 114 Query: 93 IDHPELGSVSHWSLSTGD----AHGVYEKLGFK 121 I+ + L T D A Y K F Sbjct: 115 IEWAKENHFCGLMLETQDINISACHFYAKHHFI 147
>PF06580#Sensor histidine kinase Length = 349 Score = 33.7 bits (77), Expect = 0.002 Identities = 25/180 (13%), Positives = 66/180 (36%), Gaps = 24/180 (13%) Query: 423 VAQKIIRNADAAAQVIGRIRSLFSKTEGEPQPLDLN-----ALIREVCELMGDRLASSRV 477 + I+ + A +++ + L + ++ ++ +L + R+ Sbjct: 182 IRALILEDPTKAREMLTSLSELMRYSLRYSNARQVSLADELTVVDSYLQLASIQF-EDRL 240 Query: 478 MLELDLDPELPATAADHVQMEQVVLNLVRNGIEAMQDVSTTARSLRIVSRGQDDGTVEVE 537 E ++P + + ++ +V N +++GI + + + +D+GTV +E Sbjct: 241 QFENQINPAIMDVQVPPMLVQTLVENGIKHGIAQLPQGGK----ILLKGT-KDNGTVTLE 295 Query: 538 VRDRGRGLSDPERIFEAFYTTKPDGMGMGLPICRSIVEAHYG---RVWAKNVEGGGASII 594 V + G + G GL R ++ YG ++ +G +++ Sbjct: 296 VENTGSLALK----------NTKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMV 345
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 98.4 bits (245), Expect = 4e-26 Identities = 31/145 (21%), Positives = 58/145 (40%) Query: 15 ILVDDDAEVRDALKELLNSVGIESISFSSTQEVLDAELPDRPACFVLDVRMPGQSGLDLQ 74 ++ DDDA +R L + L+ G + S+ + V DV MP ++ DL Sbjct: 7 LVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDLL 66 Query: 75 HLLLTKGIQTPVVFLTGHGDIAMSVQAMKTGAVDFLTKPVRDQTFLDAVSVAVATDKARR 134 + PV+ ++ +++A + GA D+L KP + + A+A K R Sbjct: 67 PRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKRRP 126 Query: 135 AASTAARKTMALYETLTPREREVLR 159 + + + +E+ R Sbjct: 127 SKLEDDSQDGMPLVGRSAAMQEIYR 151
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 106 bits (265), Expect = 1e-26 Identities = 82/402 (20%), Positives = 160/402 (39%), Gaps = 17/402 (4%) Query: 41 AFMAVLNIQIVNASLADIQGAIGAGIDDGGWISTAYLIAEIVVIPLTGWLSQVFSLRNYL 100 +F +VLN ++N SL DI W++TA+++ + + G LS ++ L Sbjct: 23 SFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLL 82 Query: 101 IANAVLFLAFSVACAFAANLGQMIVL-RAIQGFTGGVLIPMAFTIVITLLPKARQPIGLA 159 + ++ SV + ++++ R IQG + +V +PK + Sbjct: 83 LFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFG 142 Query: 160 LFAMSATFAPAIGPTIGGYLTENWGWQYIFYVNIVPGALMVGMLWFSLDRQPMRLALLGE 219 L +GP IGG + W Y+ ++P ++ + F + + + G Sbjct: 143 LIGSIVAMGEGVGPAIGGMIAHYIHWSYLL---LIPMITIITVP-FLMKLLKKEVRIKGH 198 Query: 220 GDWPGIATMAIGLAALQTVLEEGNKNDWFGSLFVLRLAIVAAVSLSLFVWIELTSSHPLL 279 D GI M++G+ +L + + F + VL S +FV + P + Sbjct: 199 FDIKGIILMSVGIVFF--MLFTTSYSISFLIVSVL--------SFLIFVKHIRKVTDPFV 248 Query: 280 NLRLLLRRNFGFGILANFMLGTALYGSVFILPVYLARIQGYNAEQIGLVLAWTG-LPQLL 338 + L F G+L ++ + G V ++P + + + +IG V+ + G + ++ Sbjct: 249 DPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVII 308 Query: 339 LIPLVPYLMQRFDVRLVIVTGFALFAASNFMNVHMTAGYASDQLFWPNIVRAIGQALVFA 398 + L+ R V+ G + S F+ S + + G + Sbjct: 309 FGYIGGILVDRRGPLYVLNIGVTFLSVS-FLTASFLLETTSWFMTIIIVFVLGGLSFTKT 367 Query: 399 PLSAIAVSGIEQENAGSASSLFNMIRNLGGAVGIALLQTFLT 440 +S I S ++Q+ AG+ SL N L GIA++ L+ Sbjct: 368 VISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLS 409
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 129 bits (327), Expect = 2e-35 Identities = 55/372 (14%), Positives = 102/372 (27%), Gaps = 82/372 (22%) Query: 88 VKADSTTIAPKVSGYIAEVLVRDNQKVTVGQVLARIDDRDFRAALDQAQADMRAAEATVR 147 S I P + + E++V++ + V G VL ++ A + Q+ + A Sbjct: 92 HSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQT 151 Query: 148 NLDAQIVLQRALIEQARATVAATQASLRFAAVDADRYATLAKSGTGTTQKAEA-SRAGAD 206 L + + + + R +L K T Q + D Sbjct: 152 RYQILSR-SIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLD 210 Query: 207 QLAAGLARDQAAVVAAEV----------------------RIDVLATERDKALAQVDRAQ 244 + A A + E + VL E A + Sbjct: 211 KKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRV 270 Query: 245 AAGEQARL---------------------------------------------NLSYATI 259 + ++ + I Sbjct: 271 YKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVI 330 Query: 260 TAPVDGTV-GARTLRIGQYVGAGTQLMAVVPQNAVYVV-ANFKETQLTYVRGGQPVRVAI 317 APV V + G V LM +VP++ V A + + ++ GQ + + Sbjct: 331 RAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKV 390 Query: 318 DGFPGVE---LEGHVDSLSPASGLEFALLPPDNATGNFTKIVQRIPVKIMIEDQELGGLL 374 + FP L G V +++ + D G ++ I + + L Sbjct: 391 EAFPYTRYGYLVGKVKNINLDA-------IEDQRLGLVFNVIISIEENCLSTGNK-NIPL 442 Query: 375 RAGMSVEPTIDT 386 +GM+V I T Sbjct: 443 SSGMAVTAEIKT 454
>PF06580#Sensor histidine kinase Length = 349 Score = 37.2 bits (86), Expect = 6e-05 Identities = 25/158 (15%), Positives = 50/158 (31%), Gaps = 30/158 (18%) Query: 121 RQELTDICQLLEQFQVVLANVLSPSIRLTLHVAGSLPLAFIDRELVERALLNLVLNARDA 180 ELT + L+ + + L ++ + + + LVE N + + Sbjct: 219 ADELTVVDSYLQLASIQFEDRLQFENQINPAIMDVQVPPMLVQTLVE----NGIKHGIAQ 274 Query: 181 MPAGGDISIAAALEFPPSSKTGPPKQMIRLSISDNGVGMDDGTLKMAGRKNFSTKANGSG 240 +P GG I + + + L + + G T +G Sbjct: 275 LPQGGKILLKGTKD----------NGTVTLEVENTGSLALKNT------------KESTG 312 Query: 241 LGLAVVRRIVESLSG---RFSIISTLGHGTTIDLWLPA 275 GL VR ++ L G + + G + + +P Sbjct: 313 TGLQNVRERLQMLYGTEAQIKLSEKQGKVNAM-VLIPG 349
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.7 bits (66), Expect = 0.016 Identities = 13/21 (61%), Positives = 14/21 (66%) Query: 36 VLCLLGDNGAGKSTLINTLAG 56 + L G G GKSTLINTL G Sbjct: 598 SVVLEGTGGIGKSTLINTLVG 618
>LIPOLPP20#LPP20 lipoprotein precursor signature. Length = 175 Score = 28.6 bits (63), Expect = 0.024 Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 18/113 (15%) Query: 80 GIACDLVLPQEAD--TANTTAALRAALAAEPVDVIVQQAQTRRKKILIADMDSTM--IDQ 135 G A DL+ + D T TA RA LAA + + + + + + A ++ D Sbjct: 67 GRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRSISGTDT 126 Query: 136 ECIDELADEIGVKEHVAA-ITARSMNGEIAFEPALRERVALLKGLDAAVVDRI 187 E I +L D KE +A+ + AR + ++RV +L GLD +VD++ Sbjct: 127 EKISQLVD----KELIASKMLARYVG---------KDRVFVLVGLDKQIVDKV 166
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 72.0 bits (176), Expect = 8e-16 Identities = 33/169 (19%), Positives = 59/169 (34%), Gaps = 25/169 (14%) Query: 107 QSLGSGFVIDAEQGIVVTNNHVIADADDIEV------------NFSDGVTLKATLVGTDT 154 + SG V+ + ++TN HV+ N+ +G + Sbjct: 101 TFIASGVVVG--KDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSG 158 Query: 155 KTDVAVLKVDPK------GHKLTAVKFGDSTKMRVGDWVMAVGNPFGLGGTVTVGIVSAR 208 + D+A++K P G + ++ + +V + G P V + Sbjct: 159 EGDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYPGDK----PVATMWES 214 Query: 209 NRDINSGPYDDFIQTDAAINRGNSGGPLFNSAGEVIGINTAIISPSGGS 257 I + +Q D + GNSG P+FN EVIGI+ + Sbjct: 215 KGKITYLK-GEAMQYDLSTTGGNSGSPVFNEKNEVIGIHWGGVPNEFNG 262
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 33.3 bits (76), Expect = 0.001 Identities = 14/125 (11%), Positives = 35/125 (28%), Gaps = 11/125 (8%) Query: 111 QIELAEARLRTRLDAALRRVYGLRDFEAALSEQRAVMMREVRDQLRPDATSLGLQIEDVR 170 Q EL + R L R+ + + + Q + + Sbjct: 204 QKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAK-----HAVLEQE 258 Query: 171 IRRTDLTAEVSQQTYDRMKAERLAEAARLRARGNEAAQRITARADREVVEIVAEAQKESE 230 + + E+ + E +A+ + +T E+++ + + Sbjct: 259 NKYVEAVNELRVYKSQLEQIESEILSAKEEYQ------LVTQLFKNEILDKLRQTTDNIG 312 Query: 231 ILRGE 235 +L E Sbjct: 313 LLTLE 317
>cloacin#Cloacin signature. Length = 551 Score = 30.1 bits (67), Expect = 0.017 Identities = 29/104 (27%), Positives = 42/104 (40%), Gaps = 16/104 (15%) Query: 2 PWNDKSGGGGGPWGGGGNNQGPWGQGPKGPSGPQGSPPDLEDIIRRGQDRLRRALPGGGG 61 PW SG G GG G+ G G SG G+ + + G L + PG GG Sbjct: 45 PWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPAL--STPGAGG 102 Query: 62 ASPAVFG-----LIAAVLVAL--------WAFQAVYTVQPDEVA 92 + ++ IA ++ AL W A+Y V P ++A Sbjct: 103 LAVSISAGALSAAIADIMAALKGPFKFGLWGV-ALYGVLPSQIA 145
>ECOLIPORIN#E.coli/Salmonella-type porin signature. Length = 383 Score = 33.0 bits (75), Expect = 0.004 Identities = 38/169 (22%), Positives = 59/169 (34%), Gaps = 24/169 (14%) Query: 128 IDGLSASLRYENGVFVQGATRGDGAVGEDITANLRTIADIPAKLKGSGWPDVIEIRGEVY 187 +DGL+ +L+Y QG A +I N R D G G+ + Sbjct: 163 VDGLNFALQY------QGKNESQSADDVNIGTNNRNNGDDIRYDNGDGF--------GIS 208 Query: 188 MTYAEFEALKARSAAAGGQDYVNPRNTAAGSLRQKDASVTASRNLKFFA---YAWGFTTA 244 TY A AA D N + A G++ D + + LK+ A Y + Sbjct: 209 TTYDIGMGFSA-GAAYTTSDRTNEQVNAGGTIAGGDKADAWTAGLKYDANNIYLATMYSE 267 Query: 245 DPAPTQYESVQKFADWGFKISPLMVRAKSVEELVAQYHLIEEQRSSLGY 293 T Y K D G + ++ E + AQY R ++ + Sbjct: 268 TRNMTPYGKTDKGYDGGVA-----NKTQNFE-VTAQYQFDFGLRPAVSF 310
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 33.1 bits (75), Expect = 0.003 Identities = 41/221 (18%), Positives = 67/221 (30%), Gaps = 10/221 (4%) Query: 170 EQELTRHRAKVAAAAREADYLRAAVTELTKLDPQPGEETELAELRAHMMRAEKIASEIHD 229 E+ L A + + L A L + E L + Sbjct: 161 EKALEGAMNFSTADSAKIKTLEAEKAALEARQAEL--EKALEGAMNFSTADSAKIKTLEA 218 Query: 230 AQDVLSGPSSPLPQLASLLRRLQRKATEAPGLLEDVVKSLDEAMLSLDAAQSGVEAALRA 289 + L+ + L + + LE +L+ L+ A G A Sbjct: 219 EKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTA 278 Query: 290 TEYDPQRLEKAEERLFSLRAASRKHSVAVDDLAQLRDTMVADLADLDAGEERLHGLEKQA 349 + LE + L + +A S ++ A + DLDA E LE + Sbjct: 279 DSAKIKTLEAEKAALEAEKADLEHQSQVLN--ANRQSL----RRDLDASREAKKQLEAEH 332 Query: 350 AAAREAYDIAAAQLSSLR--HAAAVGLTKAVMAELPALKLE 388 E I+ A SLR A+ K + AE L+ + Sbjct: 333 QKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQ 373
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 28.7 bits (64), Expect = 0.019 Identities = 23/116 (19%), Positives = 41/116 (35%), Gaps = 11/116 (9%) Query: 52 DVLYNQGLANLNAGRLDEASKKFDAVDRQHPYSEWARKSMVMGAFADYRKGSYDEAISSA 111 + LY+ +G+ ++A K F A+ Y +R + +GA G YD AI S Sbjct: 37 EQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYD--SRFFLGLGA-CRQAMGQYDLAIHSY 93 Query: 112 KRYLALYPSTDDAPYAQYIIGLSYYRQIKDVTQDQKEARQTLQTMQDLVTRWPTSE 167 + P + ++ + EA L Q+L+ + Sbjct: 94 SYGAIMDI---KEPRFPFHAAECLLQK-----GELAEAESGLFLAQELIADKTEFK 141
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 33.0 bits (75), Expect = 0.002 Identities = 28/149 (18%), Positives = 44/149 (29%), Gaps = 7/149 (4%) Query: 306 LEGVIRVSVVATGIDKSAAEIAAAPISIRTAPPKPAVRPAVAAVESRPAPVQQPVYEP-R 364 + G + ++ T E+ A I PA AV+ P PV +P EP Sbjct: 24 IHGAVVAGLLYT-SVHQVIELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEP 82 Query: 365 AADPVAEAIQLAEANAAAMAQARPAPVAHADDFRPQSKIFQAPPQQPMPQPVVQQMQPAP 424 +P EA + E +P P +P+ + P + P P Sbjct: 83 IPEPPKEAPVVIEKPKPK---PKPKPKPVKKVEQPKRDV--KPVESRPASPFENTAPARP 137 Query: 425 QPREMLREVQQPVAMAPQRMPRVEDFPPV 453 +PV + P Sbjct: 138 TSSTATAATSKPVTSVASGPRALSRNQPQ 166
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 49.4 bits (118), Expect = 1e-08 Identities = 50/191 (26%), Positives = 77/191 (40%), Gaps = 24/191 (12%) Query: 202 RMVATPYASGLAALVDDELELGAACIDMGGGTTTISVFSEGKFVHGDAIAIGGNHVTLDM 261 ++ P A+ + A + G+ +D+GGGTT ++V S V+ ++ IGG+ D Sbjct: 139 FLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNGVVYSSSVRIGGD--RFDE 196 Query: 262 A--------KGLSTSLDAAERLKVMHGSALPGSADD------RDLVSIQP--IGDDGDVP 305 A G AER+K GSA PG R+L P + + Sbjct: 197 AIINYVRRNYGSLIGEATAERIKHEIGSAYPGDEVREIEVRGRNLAEGVPRGFTLNSNEI 256 Query: 306 LQIPRSVMTRIVRARIDETLELLRDRLNKSGYGNAVGKRVVLTGGASQLAGLPEAARRIL 365 L+ + +T IV A + LE L + + +VLTGG + L L Sbjct: 257 LEALQEPLTGIVSA-VMVALEQCPPELA----SDISERGMVLTGGGALLRNLDRLLMEET 311 Query: 366 GRNVRIG-RPL 375 G V + PL Sbjct: 312 GIPVVVAEDPL 322
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 39.7 bits (93), Expect = 2e-05 Identities = 29/94 (30%), Positives = 37/94 (39%), Gaps = 16/94 (17%) Query: 4 VIKNGTIVTADRTWKADVLVKHGKIVAIGSDLHGDHEFDAT-------------GCYVMP 50 VI N I+ KAD+ +K G+I AIG + D + T G V Sbjct: 71 VITNALILDHWGIVKADIGLKDGRIAAIGKAGNPDMQPGVTIIVGPGTEVIAGEGKIVTA 130 Query: 51 GGIDPHTHLEMPFMGTYSADDFESGTRAALAGGT 84 GG+D H H P + SG L GGT Sbjct: 131 GGMDSHIHFICP---QQIEEALMSGLTCMLGGGT 161
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 71.2 bits (174), Expect = 2e-17 Identities = 34/147 (23%), Positives = 64/147 (43%), Gaps = 4/147 (2%) Query: 8 PRRTRIQ-QEKRELILEAALEVFSTHGFRGSTIDQIAEAAGMSKPNLLYYFRRKEDIHET 66 R+T+ + QE R+ IL+ AL +FS G +++ +IA+AAG+++ + ++F+ K D+ Sbjct: 2 ARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61 Query: 67 LMQRLLDTWLAPLREL--DDIGDPMTELRSYIRRKLEMARDFPRESRLFA-NEILQGAPR 123 + + E GDP++ LR + LE R L Sbjct: 62 IWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVG 121 Query: 124 IMPLLAGELKTLVDEKAAVIKGWMRAG 150 M ++ + L E I+ ++ Sbjct: 122 EMAVVQQAQRNLCLESYDRIEQTLKHC 148
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 67.8 bits (165), Expect = 2e-15 Identities = 50/203 (24%), Positives = 83/203 (40%), Gaps = 11/203 (5%) Query: 3 LKDKTILITGSTDGVGRVVAQRLGADGARVLVHGRDAARGKAAVAEIEAAGGRAEFFAAD 62 ++ K ITG+ G+G VA+ L + GA + + + + V+ ++A AE F AD Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 63 LASLAEIRHLAEAVRARTNRLDILINNAGIGTAAAKRQVSADGYELRFAVNYLAGFLLTS 122 + A I + + +DIL+N AG+ +S + +E F+VN F + Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 123 ELLPLLKASAPARIVNVASAGQQAIDFGDVMLTHGYSGVRAYCQSKLAQILFTVDLAEQL 182 + + IV V S + + AY SK A ++FT L +L Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGV----------PRTSMAAYASSKAAAVMFTKCLGLEL 175 Query: 183 KGTGVTVNALHPASYMNTTMVRQ 205 + N + P S T M Sbjct: 176 AEYNIRCNIVSPGS-TETDMQWS 197
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 84.3 bits (208), Expect = 1e-21 Identities = 59/245 (24%), Positives = 97/245 (39%), Gaps = 20/245 (8%) Query: 10 IIGGSSGIGLATARKLLGPGMKVTITGRN---QDKLISAWKSLGGAADKAAFDASKPDEV 66 I G + GIG A AR L G + N +K++S+ K+ A+ D + Sbjct: 13 ITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDSAAI 72 Query: 67 RQFFERL----GPFDHLVLAASGGKGLGPFETLDLADIGSGVEEKVRPQLSCLQAALPTL 122 + R+ GP D LV A G G +L + + + ++ + Sbjct: 73 DEITARIEREMGPIDILVNVA-GVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSKYM 131 Query: 123 --NKSGSVTFISAVSAQATMPGIAGIGAINGMLLTVAPILAVELKP--LRVNVVAPGVID 178 +SGS+ + + A +A + + L +EL +R N+V+PG + Sbjct: 132 MDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPGSTE 191 Query: 179 TP-----WWDFLPDEQRQAVFAE-YAGKTPVGRIGRAEDVASAIAFLVSN--GFMTGQVL 230 T W D EQ E + P+ ++ + D+A A+ FLVS G +T L Sbjct: 192 TDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHITMHNL 251 Query: 231 TCDGG 235 DGG Sbjct: 252 CVDGG 256
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 75.1 bits (184), Expect = 7e-18 Identities = 50/188 (26%), Positives = 81/188 (43%), Gaps = 8/188 (4%) Query: 3 RTILITGASSGFGAMTARALARAGHTVFASMRDPSARGGAAAAEMEALARDEGVVLKPIA 62 + ITGA+ G G AR LA G + A +P ++ + + E + Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKL-----EKVVSSLKAEARHAEAFP 63 Query: 63 LDVTSDGSAEAAIRRILGEAGRLDVLIHNAGHMGFGPAEAFSPEQLTQLYDVNVVGTQRV 122 DV + + RI E G +D+L++ AG + G + S E+ + VN G Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 123 NRAALPHMRSLGRAQMIWVGSSSTRGGTPPF-LAPYFAAKAGMDALAQSYALELARFGIE 181 +R+ +M ++ VGS+ G P +A Y ++KA + LELA + I Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNP--AGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIR 181 Query: 182 TTIVVPGA 189 IV PG+ Sbjct: 182 CNIVSPGS 189
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 104 bits (261), Expect = 4e-29 Identities = 80/249 (32%), Positives = 120/249 (48%), Gaps = 12/249 (4%) Query: 19 RTAIVTGASKGIGAAIAQRLARDGLAVVVNYARGRAEADAVRGAIEAGGGKAIAVQADIA 78 + A +TGA++GIG A+A+ LA G A + + + V +++A A A AD+ Sbjct: 9 KIAFITGAAQGIGEAVARTLASQG-AHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVR 67 Query: 79 DPTGIATLFDAGEKAFGGVDILVNNAGIMKLSPIAGTDDASFDAQIAVNLGGVFRGTREG 138 D I + E+ G +DILVN AG+++ I D ++A +VN GVF +R Sbjct: 68 DSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSV 127 Query: 139 AKRLRD--GGRIVNFSSSVVGLYQPGYGVYAATKAAVEAMTHILAKELGARRVTVNAVAP 196 +K + D G IV S+ G+ + YA++KAA T L EL + N V+P Sbjct: 128 SKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSP 187 Query: 197 GPVETA----LFMDGKSATQI-----EAIGKMIPLGRLGQPDDIAGVVSFLAGPDSGWVN 247 G ET L+ D A Q+ E IPL +L +P DIA V FL +G + Sbjct: 188 GSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHIT 247 Query: 248 GQIIRANGG 256 + +GG Sbjct: 248 MHNLCVDGG 256
>ECOLIPORIN#E.coli/Salmonella-type porin signature. Length = 383 Score = 27.2 bits (60), Expect = 0.035 Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 2/34 (5%) Query: 15 LLLVLPALLLATSAEARTIYYGNKVGMELTIVKK 48 L LV+PALL A +A A IY NK G +L + K Sbjct: 6 LALVIPALLAAGAAHAAEIY--NKDGNKLDLYGK 37
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 77.9 bits (192), Expect = 4e-20 Identities = 31/125 (24%), Positives = 58/125 (46%), Gaps = 5/125 (4%) Query: 1 MSNGAVLVVEDEQLILLDVESALEEAGFEVVAAHNAAKALAAFDAEPGKFKGLVTDIRLG 60 M+ +LV +D+ I + AL AG++V NAA A G +VTD+ + Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDL--VVTDVVMP 58 Query: 61 AGKSGWDVARHLRQANPTIPVIYMSGDSAIHWGAEGVPESVM--ITKPFFLPQIITALST 118 ++ +D+ +++A P +PV+ MS + + + + KPF L ++I + Sbjct: 59 -DENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117 Query: 119 LLNQQ 123 L + Sbjct: 118 ALAEP 122
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 59.1 bits (143), Expect = 2e-13 Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 5/127 (3%) Query: 6 KAVILIVEDSAIIRMGAVDLVVHAGYEALEASNADEAIRLLEARTDIVLVFTDVGMPGTM 65 A IL+ +D A IR + AGY+ SNA R + A LV TDV MP Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGD-GDLVVTDVVMPD-E 60 Query: 66 DGVKLAHHIRNRWPPVKLIVASGRSIIEQ--SRLPEGS-QFFPKPYSDVTIVEQMRRMLS 122 + L I+ P + ++V S ++ +G+ + PKP+ ++ + R L+ Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 123 PIETRRK 129 + R Sbjct: 121 EPKRRPS 127
>PF06580#Sensor histidine kinase Length = 349 Score = 46.4 bits (110), Expect = 9e-08 Identities = 38/185 (20%), Positives = 75/185 (40%), Gaps = 21/185 (11%) Query: 128 ARADARQKDDLIRDKAILMQEVQ---HRVANSLQIIASVLMQSARRVQSEETRGHLHDAH 184 A D + + ++ ++ + Q H + N+L I +++++ + A Sbjct: 147 AEIDQWKMASMAQEAQLMALKAQINPHFMFNALNNIRALILEDPTK------------AR 194 Query: 185 NRVMSIAAVQRH-LAQSGVENVSLRTYFTQLSESLGASMISDKDRLSIVVSVDDSVVKSD 243 + S++ + R+ L S VSL T + L + I +DRL ++ +++ Sbjct: 195 EMLTSLSELMRYSLRYSNARQVSLADELTVVDSYLQLASIQFEDRLQFENQINPAIMDVQ 254 Query: 244 ISISLGLIVTELVINALKHAF-PQERSGKISVDYRSHGQDWTLSVRDDGIGMGDSAAKAG 302 + ++V LV N +KH + GKI + TL V + G + K Sbjct: 255 V---PPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKN-TKES 310 Query: 303 LGTGI 307 GTG+ Sbjct: 311 TGTGL 315
>ICENUCLEATIN#Ice nucleation protein signature. Length = 1258 Score = 44.0 bits (103), Expect = 2e-06 Identities = 50/248 (20%), Positives = 84/248 (33%) Query: 503 LLIKHDRNKTVQHDQSDRIDHDAKHSVGHNLDEDVGNNKTVKIGVDQTTNIGSNDTETVG 562 L + +T Q + + + + G+ G T T G ++T Sbjct: 896 LTAGYGSTQTAQENSDLTTGYGSTSTAGYESSLIAGYGSTQTASFKSTLMAGYGSSQTAR 955 Query: 563 ANRSLTVMANETIHVVANSTENIDASHSQTVGLVQTVTVGAARVDTVGATETRSVGAAQM 622 SLT T +S+ +QT G T+T G T + T + G Sbjct: 956 EQSSLTAGYGSTSMAGYDSSLIAGYGSTQTAGYQSTLTAGYGSTQTAEHSSTLTAGYGST 1015 Query: 623 NTIGASRSVTVGAGQSHDIGADDGWNVEASQSIEIGADQGLKIGGAQNTEIGKTWTVKVG 682 T GA S+ G G S G ++ G L G + G+ ++ G Sbjct: 1016 ATAGADSSLIAGYGSSLTSGIRSFLTAGYGSTLISGLRSVLTAGYGSSLISGRRSSLTAG 1075 Query: 683 QDASTQIDGAHELKIGKKSLTQVGEDAGMVVGKNLTIEAKDSITIKTGSAEILMKKDGTI 742 ++ L G +S G + ++ GK + A T+ +G+ + M + Sbjct: 1076 YGSNQIASHRSSLIAGPESTQITGNRSMLIAGKGSSQTAGYRSTLISGADSVQMAGERGK 1135 Query: 743 TIKGKDIT 750 I G D T Sbjct: 1136 LIAGADST 1143 Score = 42.8 bits (100), Expect = 5e-06 Identities = 48/217 (22%), Positives = 71/217 (32%), Gaps = 2/217 (0%) Query: 530 GHNLDEDVGNNKTVKIGVDQTTNIGSNDTETVGANRSLTVMANETIHVVANSTENIDASH 589 G L G+ +T + D T GS T T GAN SL T NS Sbjct: 509 GSTLTAGYGSTQTAQNESDLITGYGS--TSTAGANSSLIAGYGSTQTASYNSVLTAGYGS 566 Query: 590 SQTVGLVQTVTVGAARVDTVGATETRSVGAAQMNTIGASRSVTVGAGQSHDIGADDGWNV 649 +QT +T G T G+ + G T S+T G G + Sbjct: 567 TQTAREGSDLTAGYGSTGTAGSDSSIIAGYGSTQTASYHSSLTAGYGSTQTAREQSVLTT 626 Query: 650 EASQSIEIGADQGLKIGGAQNTEIGKTWTVKVGQDASTQIDGAHELKIGKKSLTQVGEDA 709 + GAD L G G + G ++ +L G S + G D+ Sbjct: 627 GYGSTSTAGADSSLIAGYGSTQTAGYNSILTAGYGSTQTAQEGSDLTAGYGSTSTAGADS 686 Query: 710 GMVVGKNLTIEAKDSITIKTGSAEILMKKDGTITIKG 746 ++ G T A + + G ++G+ G Sbjct: 687 SLIAGYGSTQTAGYNSILTAGYGSTQTAQEGSDLTSG 723 Score = 39.7 bits (92), Expect = 5e-05 Identities = 62/328 (18%), Positives = 108/328 (32%), Gaps = 25/328 (7%) Query: 461 GNATQSGWKSNSSKGGG-----GYNELMFEDKAGSELVNFQAQKDHHLLIKHDRNKTVQH 515 G+ + +G+ S+ G G GYN ++ ++ AQ++ L + T + Sbjct: 869 GSTSTAGYDSSLIAGYGSTQTAGYNSILTAGYGSTQ----TAQENSDLTTGYGSTSTAGY 924 Query: 516 DQSDRIDHDAKHSVGHNLDEDVGNNKTVKIGVDQTTNIGSNDTETVGANRSLTVMANETI 575 + S + + + G + + G T G + SL T Sbjct: 925 ESSLIAGYGSTQTASFKSTLMAGYGSSQTAREQSSLTAGYGSTSMAGYDSSLIAGYGSTQ 984 Query: 576 HVVANSTENIDASHSQTVGLVQTVTVGAARVDTVGATETRSVGAAQMNTIGASRSVTVGA 635 ST +QT T+T G T GA + G T G +T G Sbjct: 985 TAGYQSTLTAGYGSTQTAEHSSTLTAGYGSTATAGADSSLIAGYGSSLTSGIRSFLTAGY 1044 Query: 636 GQSHDIGADDGWNVEASQSIEIGADQGLK---------------IGGAQNTEIGKTWTVK 680 G + G S+ G L I G ++T+I ++ Sbjct: 1045 GSTLISGLRSVLTAGYGSSLISGRRSSLTAGYGSNQIASHRSSLIAGPESTQITGNRSML 1104 Query: 681 VGQDASTQIDGAHELKI-GKKSLTQVGEDAGMVVGKNLTIEAKDSITIKTGSAEILMKKD 739 + S+Q G I G S+ GE ++ G + T A D + G+ L D Sbjct: 1105 IAGKGSSQTAGYRSTLISGADSVQMAGERGKLIAGADSTQTAGDRSKLLAGNNSYLTAGD 1164 Query: 740 GTITIKGKDITVKGSGKINVDASSDIVM 767 + G D + + + A + ++ Sbjct: 1165 RSKLTAGNDCILMAGDRSKLTAGINSIL 1192 Score = 36.7 bits (84), Expect = 4e-04 Identities = 49/256 (19%), Positives = 80/256 (31%), Gaps = 12/256 (4%) Query: 497 AQKDHHLLIKHDRNKTVQHDQSDRIDHDAKHSVGHNLDEDVGNNKTVKIGVDQTTNIGSN 556 A + L+ + +T + + + + + + D G T G + + G Sbjct: 490 AGYESSLIAGYGSTQTAGYGSTLTAGYGSTQTAQNESDLITGYGSTSTAGANSSLIAGYG 549 Query: 557 DTETVGANRSLTVMANETIHVVANSTENIDASHSQTVGLVQTVTVGAARVDTVGATETRS 616 T+T N LT T S + T G ++ G T + + Sbjct: 550 STQTASYNSVLTAGYGSTQTAREGSDLTAGYGSTGTAGSDSSIIAGYGSTQTASYHSSLT 609 Query: 617 VGAAQMNTIGASRSVTVGAGQSHDIGADDGWNVEASQSIEIGADQGLKIGGAQNTEIGKT 676 G T +T G G + GAD + G + L G G T Sbjct: 610 AGYGSTQTAREQSVLTTGYGSTSTAGADSSLIAGYGSTQTAGYNSILTAG------YGST 663 Query: 677 WTVKVGQD-----ASTQIDGAHELKIGKKSLTQV-GEDAGMVVGKNLTIEAKDSITIKTG 730 T + G D ST GA I TQ G ++ + G T A++ + +G Sbjct: 664 QTAQEGSDLTAGYGSTSTAGADSSLIAGYGSTQTAGYNSILTAGYGSTQTAQEGSDLTSG 723 Query: 731 SAEILMKKDGTITIKG 746 + I G Sbjct: 724 YGSTSTAGADSSLIAG 739 Score = 36.3 bits (83), Expect = 5e-04 Identities = 47/235 (20%), Positives = 75/235 (31%), Gaps = 2/235 (0%) Query: 497 AQKDHHLLIKHDRNKTVQHDQSDRIDHDAKHSVGHNLDEDVGNNKTVKIGVDQTTNIGSN 556 A D ++ + +T + S + + + G T G D + G Sbjct: 586 AGSDSSIIAGYGSTQTASYHSSLTAGYGSTQTAREQSVLTTGYGSTSTAGADSSLIAGYG 645 Query: 557 DTETVGANRSLTVMANETIHVVANSTENIDASHSQTVGLVQTVTVGAARVDTVGATETRS 616 T+T G N LT T S + T G ++ G T G + Sbjct: 646 STQTAGYNSILTAGYGSTQTAQEGSDLTAGYGSTSTAGADSSLIAGYGSTQTAGYNSILT 705 Query: 617 VGAAQMNTIGASRSVTVGAGQSHDIGADDGWNVEASQSIEIGADQGLKIGGAQNTEIGKT 676 G T +T G G + GAD + S + + G +T+ + Sbjct: 706 AGYGSTQTAQEGSDLTSGYGSTSTAGADSSL-IAGYGSTQTASYHSSLTAGYGSTQTARE 764 Query: 677 WTVKVGQDASTQIDGAHELKIGKKSLTQV-GEDAGMVVGKNLTIEAKDSITIKTG 730 +V ST GA I TQ G + + G T A++ + TG Sbjct: 765 QSVLTTGYGSTSTAGADSSLIAGYGSTQTAGYHSILTAGYGSTQTAQERSDLTTG 819 Score = 35.9 bits (82), Expect = 7e-04 Identities = 41/210 (19%), Positives = 65/210 (30%), Gaps = 2/210 (0%) Query: 538 GNNKTVKIGVDQTTNIGSNDTETVGANRSLTVMANETIHVVANSTENIDASHSQTVGLVQ 597 G T + G T+T LT T A+S+ +QT G Sbjct: 739 GYGSTQTASYHSSLTAGYGSTQTAREQSVLTTGYGSTSTAGADSSLIAGYGSTQTAGYHS 798 Query: 598 TVTVGAARVDTVGATETRSVGAAQMNTIGASRSVTVGAGQSHDIGADDGWNVEASQSIEI 657 +T G T + G +T GA S+ G G + G + + Sbjct: 799 ILTAGYGSTQTAQERSDLTTGYGSTSTAGADSSLIAGYGSTQTAGYNSILTAGYGSTQTA 858 Query: 658 GADQGLKIGGAQNTEIGKTWTVKVGQDASTQIDGAHE-LKIGKKSLTQVGEDAGMVVGKN 716 + L G + G ++ G STQ G + L G S E++ + G Sbjct: 859 QENSDLTTGYGSTSTAGYDSSLIAGYG-STQTAGYNSILTAGYGSTQTAQENSDLTTGYG 917 Query: 717 LTIEAKDSITIKTGSAEILMKKDGTITIKG 746 T A ++ G + + G Sbjct: 918 STSTAGYESSLIAGYGSTQTASFKSTLMAG 947 Score = 35.9 bits (82), Expect = 8e-04 Identities = 58/279 (20%), Positives = 90/279 (32%), Gaps = 19/279 (6%) Query: 497 AQKDHHLLIKHDRNKTVQHDQSDRIDHDAKHSVGHNLDEDVGNNKTVKIGVDQTTNIGSN 556 A ++ + + +T + + + G + G T G D + G Sbjct: 218 AGEESSQMAGYGSTQTGMKGSDLTAGYGSTGTAGDDSSLIAGYGSTQTAGEDSSLTAGYG 277 Query: 557 DTETVGANRSLTVMANETIHVVANSTENIDASHSQTVGLVQTVTVGAARVDTVGATETRS 616 T+T LT T A+S+ +QT G T T G T + Sbjct: 278 STQTAQKGSDLTAGYGSTGTAGADSSLIAGYGSTQTAGEESTQTAGYGSTQTAQKGSDLT 337 Query: 617 VGAAQMNTIGASRSVTVGAGQSHDIGADDGWNVEASQSIEIGADQGLKIGGAQNTEIGKT 676 G T G S+ G G + G D +S + G+ Q + G G T Sbjct: 338 AGYGSTGTAGDDSSLIAGYGSTQTAGED------SSLTAGYGSTQTAQKGSDLTAGYGST 391 Query: 677 WTVKVGQDASTQIDGAHELKIGKKSLTQVGEDAGMVVGKNLTIEAKDSITIKTGSAEILM 736 T G D+S L G S GE++ G T A+ + G Sbjct: 392 GT--AGADSS--------LIAGYGSTQTAGEESTQTAGYGSTQTAQKGSDLTAGYGSTGT 441 Query: 737 KKDGTITIKGKDITVKGSGKINVDA---SSDIVMKGSNI 772 D + I G T ++ A S+ KGS++ Sbjct: 442 AGDDSSLIAGYGSTQTAGEDSSLTAGYGSTQTAQKGSDL 480 Score = 34.7 bits (79), Expect = 0.002 Identities = 43/236 (18%), Positives = 70/236 (29%), Gaps = 4/236 (1%) Query: 497 AQKDHHLLIKHDRNKTVQHDQSDRIDHDAKHSVGHNLDEDVGNNKTVKIGVDQTTNIGSN 556 A D L+ + +T D S + + + D G T G + + G Sbjct: 442 AGDDSSLIAGYGSTQTAGEDSSLTAGYGSTQTAQKGSDLTAGYGSTSTAGYESSLIAGYG 501 Query: 557 DTETVGANRSLTVMANETIHVVANSTENIDASHSQTVGLVQTVTVGAARVDTVGATETRS 616 T+T G +LT T S + T G ++ G T + Sbjct: 502 STQTAGYGSTLTAGYGSTQTAQNESDLITGYGSTSTAGANSSLIAGYGSTQTASYNSVLT 561 Query: 617 VGAAQMNTIGASRSVTVGAGQSHDIGADDGWNVEASQSIEIGADQGLKI--GGAQNTEIG 674 G T +T G G + G+D + L G Q Sbjct: 562 AGYGSTQTAREGSDLTAGYGSTGTAGSDSSIIAGYGSTQTASYHSSLTAGYGSTQTAREQ 621 Query: 675 KTWTVKVGQDASTQIDGAHELKIGKKSLTQVGEDAGMVVGKNLTIEAKDSITIKTG 730 T G ++ D + L G S G ++ + G T A++ + G Sbjct: 622 SVLTTGYGSTSTAGADSS--LIAGYGSTQTAGYNSILTAGYGSTQTAQEGSDLTAG 675 Score = 34.0 bits (77), Expect = 0.003 Identities = 47/239 (19%), Positives = 75/239 (31%), Gaps = 18/239 (7%) Query: 497 AQKDHHLLIKHDRNKTVQHDQSDRIDHDAKHSVGHNLDEDVGNNKTVKIGVDQTTNIGSN 556 A + L+ + +T ++ + + + D G T G D + G Sbjct: 538 AGANSSLIAGYGSTQTASYNSVLTAGYGSTQTAREGSDLTAGYGSTGTAGSDSSIIAGYG 597 Query: 557 DTETVGANRSLTVMANETIHVVANSTENIDASHSQTVGLVQTVTVGAARVDTVGATETRS 616 T+T + SLT T QT +T G T GA + Sbjct: 598 STQTASYHSSLTAGYGST----------------QTAREQSVLTTGYGSTSTAGADSSLI 641 Query: 617 VGAAQMNTIGASRSVTVGAGQSHDIGADDGWNVEASQSIEIGADQGLKIGGAQNTEIGKT 676 G T G + +T G G + + GAD L G G Sbjct: 642 AGYGSTQTAGYNSILTAGYGSTQTAQEGSDLTAGYGSTSTAGADSSLIAGYGSTQTAGYN 701 Query: 677 WTVKVGQDASTQIDGAHELKIGKKSLTQVGEDAGMVVGKNLTIEA--KDSITIKTGSAE 733 + G ++ +L G S + G D+ ++ G T A S+T GS + Sbjct: 702 SILTAGYGSTQTAQEGSDLTSGYGSTSTAGADSSLIAGYGSTQTASYHSSLTAGYGSTQ 760 Score = 34.0 bits (77), Expect = 0.003 Identities = 51/281 (18%), Positives = 93/281 (33%), Gaps = 25/281 (8%) Query: 511 KTVQHDQSDRIDHDAKHSVGHNLDEDVGNNKTVKIGVDQTTNIGSNDTETVGANRSLTVM 570 +T Q + + + + G++ G T G + G T+T N LT Sbjct: 856 QTAQENSDLTTGYGSTSTAGYDSSLIAGYGSTQTAGYNSILTAGYGSTQTAQENSDLTTG 915 Query: 571 ANETIHVVANSTENIDASHSQTVGLVQTVTVGAARVDTVGATETRSVGAAQMNTIGASRS 630 T S+ +QT T+ G T + + G + G S Sbjct: 916 YGSTSTAGYESSLIAGYGSTQTASFKSTLMAGYGSSQTAREQSSLTAGYGSTSMAGYDSS 975 Query: 631 VTVGAGQSHDIGADDGWNVEASQSIEIGADQGLKIGGAQNTEIGKTWTVKVGQDASTQID 690 + G G + G +++ + G+ Q + G T T G D+S Sbjct: 976 LIAGYGSTQTAG------YQSTLTAGYGSTQTAEHSSTLTAGYGSTAT--AGADSSLIAG 1027 Query: 691 GAHELKIGKKSLTQVGEDAGMVV----------GKNLTIEAKDSITIKTGSAEI------ 734 L G +S G + ++ G +L + S+T GS +I Sbjct: 1028 YGSSLTSGIRSFLTAGYGSTLISGLRSVLTAGYGSSLISGRRSSLTAGYGSNQIASHRSS 1087 Query: 735 LMKKDGTITIKG-KDITVKGSGKINVDASSDIVMKGSNILQ 774 L+ + I G + + + G G ++ G++ +Q Sbjct: 1088 LIAGPESTQITGNRSMLIAGKGSSQTAGYRSTLISGADSVQ 1128 Score = 33.6 bits (76), Expect = 0.004 Identities = 38/233 (16%), Positives = 72/233 (30%), Gaps = 10/233 (4%) Query: 523 HDAKHSVGHNLDEDVGNNKTVKIGVDQTTNIGSN--------DTETVGANRSLTVMANET 574 + + + G+ + + G T+ G++ T+T G + LT T Sbjct: 748 YHSSLTAGYGSTQTAREQSVLTTGYGSTSTAGADSSLIAGYGSTQTAGYHSILTAGYGST 807 Query: 575 IHVVANSTENIDASHSQTVGLVQTVTVGAARVDTVGATETRSVGAAQMNTIGASRSVTVG 634 S + T G ++ G T G + G T + +T G Sbjct: 808 QTAQERSDLTTGYGSTSTAGADSSLIAGYGSTQTAGYNSILTAGYGSTQTAQENSDLTTG 867 Query: 635 AGQSHDIGADDGWNVEASQSIEIGADQGLKIGGAQNTEIGKTWTVKVGQDASTQIDG-AH 693 G + G D + S + + G +T+ + + ST G Sbjct: 868 YGSTSTAGYDSSL-IAGYGSTQTAGYNSILTAGYGSTQTAQENSDLTTGYGSTSTAGYES 926 Query: 694 ELKIGKKSLTQVGEDAGMVVGKNLTIEAKDSITIKTGSAEILMKKDGTITIKG 746 L G S + ++ G + A++ ++ G M + I G Sbjct: 927 SLIAGYGSTQTASFKSTLMAGYGSSQTAREQSSLTAGYGSTSMAGYDSSLIAG 979 Score = 33.2 bits (75), Expect = 0.005 Identities = 43/212 (20%), Positives = 68/212 (32%), Gaps = 8/212 (3%) Query: 538 GNNKTVKIGVDQTTNIGSNDTETVGANRSLTVMANETIHVVANSTENIDASHSQTVGLVQ 597 + + G T G + T G + T A+ T+ ST+ SQ G Sbjct: 171 THQSQLIAGYGSTETAGDSSTLIAGYGSTGTAGADSTLVAGYGSTQTAGEESSQMAGYGS 230 Query: 598 T--------VTVGAARVDTVGATETRSVGAAQMNTIGASRSVTVGAGQSHDIGADDGWNV 649 T +T G T G + G T G S+T G G + Sbjct: 231 TQTGMKGSDLTAGYGSTGTAGDDSSLIAGYGSTQTAGEDSSLTAGYGSTQTAQKGSDLTA 290 Query: 650 EASQSIEIGADQGLKIGGAQNTEIGKTWTVKVGQDASTQIDGAHELKIGKKSLTQVGEDA 709 + GAD L G G+ T G ++ +L G S G+D+ Sbjct: 291 GYGSTGTAGADSSLIAGYGSTQTAGEESTQTAGYGSTQTAQKGSDLTAGYGSTGTAGDDS 350 Query: 710 GMVVGKNLTIEAKDSITIKTGSAEILMKKDGT 741 ++ G T A + ++ G + G+ Sbjct: 351 SLIAGYGSTQTAGEDSSLTAGYGSTQTAQKGS 382 Score = 33.2 bits (75), Expect = 0.005 Identities = 58/278 (20%), Positives = 93/278 (33%), Gaps = 43/278 (15%) Query: 522 DHDAKHSVGHNLDEDVGNNKTVKIGVDQTTNIGSND--------TETVGANRSLT----- 568 H ++ G+ E G++ T+ G T G++ T+T G S Sbjct: 171 THQSQLIAGYGSTETAGDSSTLIAGYGSTGTAGADSTLVAGYGSTQTAGEESSQMAGYGS 230 Query: 569 -----VMANETIHVVANSTENIDAS------HSQTVGLVQTVTVGAARVDTVGATETRSV 617 ++ T + T D+S +QT G ++T G T + Sbjct: 231 TQTGMKGSDLTAGYGSTGTAGDDSSLIAGYGSTQTAGEDSSLTAGYGSTQTAQKGSDLTA 290 Query: 618 GAAQMNTIGASRSVTVGAGQSHDIGADDGWNVEASQSIEIGADQGLKIGGAQNTEIGKTW 677 G T GA S+ G G + G + ++Q+ G+ Q + G G T Sbjct: 291 GYGSTGTAGADSSLIAGYGSTQTAGEE------STQTAGYGSTQTAQKGSDLTAGYGSTG 344 Query: 678 TVKVGQDASTQIDGAHELKIGKKSLTQVGEDAGMVVGKNLTIEAKDSITIKTGSAEILMK 737 T G D+S L G S GED+ + G T A+ + G Sbjct: 345 T--AGDDSS--------LIAGYGSTQTAGEDSSLTAGYGSTQTAQKGSDLTAGYGSTGTA 394 Query: 738 KDGTITIKGKDITVKGSGKINVDA---SSDIVMKGSNI 772 + I G T + A S+ KGS++ Sbjct: 395 GADSSLIAGYGSTQTAGEESTQTAGYGSTQTAQKGSDL 432 Score = 30.5 bits (68), Expect = 0.036 Identities = 50/250 (20%), Positives = 84/250 (33%), Gaps = 32/250 (12%) Query: 497 AQKDHHLLIKHDRNKTVQHDQSDRIDHDAKHSVGHNLDEDVGNNKTVKIGVDQTTNIGSN 556 A D L+ + +T + + + + + D G T G D + G Sbjct: 394 AGADSSLIAGYGSTQTAGEESTQTAGYGSTQTAQKGSDLTAGYGSTGTAGDDSSLIAGYG 453 Query: 557 DTETVGANRSLTVM----------ANETIHVVANSTENIDAS------HSQTVGLVQTVT 600 T+T G + SLT ++ T + ST ++S +QT G T+T Sbjct: 454 STQTAGEDSSLTAGYGSTQTAQKGSDLTAGYGSTSTAGYESSLIAGYGSTQTAGYGSTLT 513 Query: 601 VGAARVDTVGATETRSVGAAQMNTIGASRSVTVGAGQSHDIGADDGWNVEASQSIEIGAD 660 G T G +T GA+ S+ G G + + + + G+ Sbjct: 514 AGYGSTQTAQNESDLITGYGSTSTAGANSSLIAGYGSTQTASYN------SVLTAGYGST 567 Query: 661 QGLKIGGAQNTEIGKTWTVKVGQDASTQIDGAHELKIGKKSLTQVGEDAGMVVGKNLTIE 720 Q + G G T T G D+S + G S + + G T Sbjct: 568 QTAREGSDLTAGYGSTGT--AGSDSS--------IIAGYGSTQTASYHSSLTAGYGSTQT 617 Query: 721 AKDSITIKTG 730 A++ + TG Sbjct: 618 AREQSVLTTG 627
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 65.3 bits (159), Expect = 1e-13 Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 17/123 (13%) Query: 379 ISNQLLFASGQAELKAQFQPI---AADIAKALDAEAGPIKIVGHTDNVKPKKSSAFKSNF 435 + + +LF +A LK + Q LD + G + ++G+TD + S A+ N Sbjct: 217 LKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIG---SDAY--NQ 271 Query: 436 DLSVARAKAVQAMIARQLKDPSRLSVDGKGEDEPIADNATADGR---------AKNRRVD 486 LS RA++V + + ++S G GE P+ N + + A +RRV+ Sbjct: 272 GLSERRAQSVVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVE 331 Query: 487 VMI 489 + + Sbjct: 332 IEV 334
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 63.9 bits (155), Expect = 2e-12 Identities = 55/290 (18%), Positives = 81/290 (27%), Gaps = 15/290 (5%) Query: 407 PVVEAPKPVAETPQPDESNPPPPVQPQPEPSKPDNAATI----ETVNPPALPDAQVKPPV 462 P VE +T P PS P N I E PP P + Sbjct: 983 PEVEKRNQTVDTTNI----TTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTE 1038 Query: 463 PAENQAPGVPPATEAR--QPAEQAPVAPPVGKPASPTVQPETTANSQAQAPPVEIKPAQN 520 + E E V K A V+ T N AQ+ + Sbjct: 1039 TVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTT 1098 Query: 521 PTANPPKTSAPSQAGAESKPAQQANPPATEPSA-TELVEILSKLARPEASPPPASESRLP 579 T +A E++ Q+ ++ S E E + A P P + P Sbjct: 1099 ETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEP 1158 Query: 580 AQPTSPPVKPAAPPP-TASQPTPPTSPSEPTQTA-QPSQQPQA--PVTTRPENTEVAINV 635 T+ P T+S P + S T + P+ P TT+P + N Sbjct: 1159 QSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNK 1218 Query: 636 PKPAVPPAKPVDEAAQRASWVRDFSGGDCFYASLTSQTASSAAIEGLATA 685 PK + + LTS ++ + A A Sbjct: 1219 PKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTNAVLSDARAKA 1268 Score = 55.5 bits (133), Expect = 8e-10 Identities = 52/306 (16%), Positives = 84/306 (27%), Gaps = 50/306 (16%) Query: 337 LSQPRPAPAPAPASTPMPTAPRKSSRMPAVAGGLVTLAVLLGGGLYFSGILAPPPAEEKL 396 +Q + P S +A PPPA Sbjct: 988 RNQTVDTTNITTPNNIQADVPSVPSNNEEIAR--------------VDEAPVPPPA---- 1029 Query: 397 KPLTPKPVPKPVVEAPKPVAETPQPDESNPPPPVQPQPEPSKPDNAATIETVNPPALPDA 456 P TP + V E K ++T + +E + E +K + N A Sbjct: 1030 -PATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKA--NTQTNEVA 1086 Query: 457 QVKPPVPAENQAPGVPPATEARQPAEQAPVAPPVGKPASPTVQPETTANSQAQAPPVEIK 516 Q E Q TE ++ A K T + + +Q P + + Sbjct: 1087 QSGSET-KETQT------TETKETATVEKE----EKAKVETEKTQEVPKVTSQVSPKQEQ 1135 Query: 517 P-AQNPTANPPKTSAPSQAGAESKPAQQANPPATEPSATELVEILSKLARPEASPPPASE 575 P A P + + P+ + +Q TE A E P +E Sbjct: 1136 SETVQPQAEPARENDPTVN-IKEPQSQTNTTADTEQPAKET---------SSNVEQPVTE 1185 Query: 576 SRLPAQPTSPPVKPAAPPPTASQPT-------PPTSPSEPTQTAQPSQQPQAPVTTRPEN 628 S S P P +QPT P + + + P A ++ + Sbjct: 1186 STTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRS 1245 Query: 629 TEVAIN 634 T + Sbjct: 1246 TVALCD 1251 Score = 43.9 bits (103), Expect = 3e-06 Identities = 37/190 (19%), Positives = 54/190 (28%), Gaps = 19/190 (10%) Query: 392 AEEKLKPLTPKPVPKPVVEAPKPVAETPQPDESNPPPPVQPQPEPSKPDNAATIETVNPP 451 +E K T V + K ET + E P V Q P + ETV P Sbjct: 1090 SETKETQTTETKETATVEKEEKAKVETEKTQEV---PKVTSQVSPKQ----EQSETVQPQ 1142 Query: 452 ALPDAQVKPPVPAENQAPGVPPATEARQPAEQAP--VAPPVGKPASPTVQPETTANSQAQ 509 A P + P V + P + + P + T NS + Sbjct: 1143 AEPARENDPTVNIKE-----PQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVE 1197 Query: 510 APPVEIKPAQNPT-----ANPPKTSAPSQAGAESKPAQQANPPATEPSATELVEILSKLA 564 P PT +N PK + + A + + S L ++ S Sbjct: 1198 NPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNT 1257 Query: 565 RPEASPPPAS 574 S A Sbjct: 1258 NAVLSDARAK 1267
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 281 bits (721), Expect = 2e-92 Identities = 85/426 (19%), Positives = 171/426 (40%), Gaps = 3/426 (0%) Query: 17 IRRVAFAGYAATALLVGCFGYWAVSAPLSGAVITQGTISATGGNILIQHPEGGIIEALLV 76 RR Y LV F +V + G ++ +G + I+ E I++ ++V Sbjct: 54 SRRPRLVAYFIMGFLVIAFI-LSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIV 112 Query: 77 HDGDRVQQAQDLIVLDPTAAQAELNRLTRQSIALRAAAARLEAERDGLDR--LAPITKPA 134 +G+ V++ L+ L A+A+ + + R R + ++ L + P Sbjct: 113 KEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPD 172 Query: 135 PASLQADFEALIREQQKEFDARLARFRSEQSILAQRVAMHRQSVVGLQSQKEAVQQQAEI 194 Q E + + + +++++ + R + + ++ + + + Sbjct: 173 EPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRV 232 Query: 195 VKKELGIKTGLLDKGLTNRTEYSQLLRSEADLVGQAGALEANLAAANTQIVEAQEQIERL 254 K L + LL K + + + V + ++ L ++I+ A+E+ + + Sbjct: 233 EKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLV 292 Query: 255 TTQRVEEALTKLDEVRSNLADVEEQIRAAEAVLRRTTIKAPAAGIVVSSTYNTKGSVIAR 314 T E L KL + N+ + ++ E + + I+AP + V +T+G V+ Sbjct: 293 TQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTT 352 Query: 315 GEKIMEILPTAPGLIVDARLRPKDVDQVRVGQPAKLRLSALNMRLTPEVSATVAQISADR 374 E +M I+P L V A ++ KD+ + VGQ A +++ A + V I+ D Sbjct: 353 AETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDA 412 Query: 375 LIDEATHEPYFRVKLRIAADLPPGVKPGQLYPGTPVEAFINTGDRTFFEYLVRPMLDSFA 434 + D+ + + L G K L G V A I TG R+ YL+ P+ +S Sbjct: 413 IEDQRLGLVFNVIISIEENCLSTGNKNIPLSSGMAVTAEIKTGMRSVISYLLSPLEESVT 472 Query: 435 RAFTER 440 + ER Sbjct: 473 ESLRER 478
>CABNDNGRPT#NodO calcium binding signature. Length = 479 Score = 55.7 bits (134), Expect = 2e-10 Identities = 41/208 (19%), Positives = 61/208 (29%), Gaps = 19/208 (9%) Query: 31 LYGSSGNDSFYGASG----VNVTMHGGTGDDIYYLYAAGNKVAEAAGAGIDTISTW---M 83 ++ D + + G D + + N+ + + Sbjct: 273 FNSNTDRDFYTATDSSKALIFSVWDAGGTDTFDFSGYSNNQRINLNEGSFSDVGGLKGNV 332 Query: 84 SYKLPDNVENLVVTNANNYAFGNGLDNIITAKAGHQTLDGGAGNDVLIDGGGGYDTFIVS 143 S +EN + + N+ GN DNI+ AG+ L GGAG D L GG G DTF+ Sbjct: 333 SIAHGVTIENAIGGSGNDILVGNSADNILQGGAGNDVLYGGAGADTLY-GGAGRDTFVYG 391 Query: 144 KGNGS---------DLIANFAATDTVRLNGYGFTSFDAIHSSMIQAGSNVLLNLGSGEIL 194 G S D D G SF G V+L + + Sbjct: 392 SGQDSTVAAYDWIADFQKGIDKIDLSAFRNEGQLSFVQDQ--FTGKGQEVMLQWDAANSI 449 Query: 195 EFKDTTIDKLQPSQFELPIDKSGMQLSF 222 F + I Q Sbjct: 450 TNLWLHEAGHSSVDFLVRIVGQAAQSDI 477
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 109 bits (273), Expect = 8e-28 Identities = 86/411 (20%), Positives = 160/411 (38%), Gaps = 27/411 (6%) Query: 18 MCVGMFIALLDIQIVASSLQDIGGGLSAAQDQIGWVQTSYLVAEIIVIPLSGWLTRVFST 77 +C+ F ++L+ ++ SL DI + WV T++++ I + G L+ Sbjct: 19 LCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGI 78 Query: 78 RWLFTISAAGFTLASMLCGFAWSIESMIVF-RALQGLLGASMIPTVFTSSFHYFQGPRRV 136 + L S++ S S+++ R +QG A+ V Y R Sbjct: 79 KRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRG 138 Query: 137 YAAAVVGSIASIAPTLGPVIGGWITDTLNWHWLFYVNVIPGTIITILVAVLVKIDKADPS 196 A ++GSI ++ +GP IGG I ++W +L + +I TIIT+ L+K+ K + Sbjct: 139 KAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMI--TIITVP--FLMKLLKKEVR 194 Query: 197 LLKGADYIGIVLMAVSLGTAEYVLEEGSRWNWFDDATIRNGAIVAGITMVLFVIRSLTYS 256 + D GI+LM+V + F + + IV+ ++ ++FV + Sbjct: 195 IKGHFDIKGIILMSVGIVFFML----------FTTSYSISFLIVSVLSFLIFVKHIRKVT 244 Query: 257 QPVVDFRAFGNRNFAIGCFLSFVTGIGIFATIYLTPLFLGYVRGYDALQTGLAV-FSTGV 315 P VD N F IG + + + + P + V + G + F + Sbjct: 245 DPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTM 304 Query: 316 ASMVGVPVYIFLAKRFDTRWLMMFGLASFGASMWSFSAI---TSQWGAAELLIPQLFRGF 372 + ++ + L R +++ G+ S + S + TS + ++ F Sbjct: 305 SVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSF 364 Query: 373 PQVFA--VAPSVNLGLGSLPPERLKYASGLFNTMRNLGGAVGIAICGAILN 421 + + S SL + L N L GIAI G +L+ Sbjct: 365 TKTVISTIVSS------SLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLS 409
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 102 bits (256), Expect = 3e-26 Identities = 57/432 (13%), Positives = 129/432 (29%), Gaps = 87/432 (20%) Query: 9 ELQPAQPSAVQIPAPAKSRRKP-IVMLGAAIAIGVAGWYGFQWWQAGRFVMSTDDAYVGG 67 E PA ++ P + R +M IA ++ Q + G Sbjct: 40 EFLPAHLELIETPVSRRPRLVAYFIMGFLVIAFILSVLG-----QVEIVATANGKLTHSG 94 Query: 68 NVTPLAPRVAGHIDQILVEDNQHVDAGQLIIRIDDRPFKAA------------------- 108 + P + +I+V++ + V G +++++ +A Sbjct: 95 RSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQ 154 Query: 109 -----------------------------VERARASVQQQQSALDNLRAQVSL----QNS 135 V R + +++Q S N + Q L + + Sbjct: 155 ILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRA 214 Query: 136 LIEQAEADLEAKSAAATFTTQDAKRYEVLASTRAGSQQ---DAQRSLAAD----GQAKAS 188 A + + + L +A ++ + + K+ Sbjct: 215 ERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQ 274 Query: 189 VSASRAGLAAARQQLDVL--------NTQISEATAAVLAAKADLDTAELDLGFTQIRAPI 240 + + + +A+++ ++ ++ + T + +L E + IRAP+ Sbjct: 275 LEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPV 334 Query: 241 DGLVGN-RLAQVGTYVSPGSYLLTIVPQS-GLWVDANFKEDQLRRMADGQAATVYTDIAP 298 V ++ G V+ L+ IVP+ L V A + + + GQ A + + P Sbjct: 335 SVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFP 394 Query: 299 DQ---PLKGHVSSLGPATGAIFSVIPAQNATGNFTKIVQRVPVRITIDPDQARKVALRPG 355 L G V ++ G ++ + ++ L G Sbjct: 395 YTRYGYLVGKVKNINLDA-------IEDQRLGLVFNVIISIEENCLSTGNKNIP--LSSG 445 Query: 356 LSTVVTVDTGAH 367 ++ + TG Sbjct: 446 MAVTAEIKTGMR 457
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 81.6 bits (201), Expect = 1e-20 Identities = 59/197 (29%), Positives = 89/197 (45%), Gaps = 15/197 (7%) Query: 5 GQIAIVTGGGSGLGEATARALAAKGARVAIFDVGIERAAKVAADIGGISVQCDVSSAD-S 63 G+IA +TG G+GEA AR LA++GA +A D E+ KV + + + + AD Sbjct: 8 GKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVR 67 Query: 64 GTAALAETASKLGEPR----ILVNCAGIAIGVKTIGKDGPHPLDQYRKVIEVNLIGTFNM 119 +AA+ E +++ ILVN AG+ G +++ VN G FN Sbjct: 68 DSAAIDEITARIEREMGPIDILVNVAGVL----RPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 120 IRLVADRAASLEPLQGGERGVIVNTASVAAYDGQIGQAAYSASKGGVVGMTLPVARDLAR 179 R V+ + G IV S A + AAY++SK V T + +LA Sbjct: 124 SRSVSKY------MMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAE 177 Query: 180 SGIRVCTIAPGIFKTPM 196 IR ++PG +T M Sbjct: 178 YNIRCNIVSPGSTETDM 194
>PF03309#Bvg accessory factor Length = 271 Score = 29.3 bits (66), Expect = 0.003 Identities = 14/37 (37%), Positives = 18/37 (48%) Query: 42 DGEMSVGAIADKVMLSQSALSQHLAKLRALDLVETRR 78 GE GAIA V +S A + A LR ++L R Sbjct: 144 KGEFLGGAIAPGVQVSSDAAAARSAALRRVELTRPRS 180
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 31.7 bits (72), Expect = 0.004 Identities = 19/139 (13%), Positives = 41/139 (29%), Gaps = 12/139 (8%) Query: 74 LAIERTDKNHALAELSAKNEALRQREEELHRLSERLKDTERKLEKRALELEKLEQMYDDA 133 + + + AE + + E RL D L K+A+ + + Sbjct: 202 KYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQ---- 257 Query: 134 SFSSSSRQIELVARESELQKLASDIALLRGQRKEADRRQQEIAAESKA-ARDALKAEKKR 192 + + V +EL+ S + + + A Q + K D L+ Sbjct: 258 -------ENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDN 310 Query: 193 VAELDKKVERLLATLADRE 211 + L ++ + Sbjct: 311 IGLLTLELAKNEERQQASV 329
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 66.4 bits (162), Expect = 4e-16 Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 2/111 (1%) Query: 7 VDDSSVIRKVAKRILGGSDMVVIEAASGLDALEMCAADMPDIIVVDGALPDVQAVDLIRR 66 DD + IR V + L + V ++ AA D++V D +PD A DL+ R Sbjct: 9 ADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDLLPR 68 Query: 67 VRAMESPTRPQILISLVELDIASIMRAKRAGAQGYLLKPFNRPQLLERFRN 117 ++ P P +++S + + ++A GA YL KPF+ +L+ Sbjct: 69 IKKAR-PDLPVLVMS-AQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 79.5 bits (196), Expect = 2e-19 Identities = 27/124 (21%), Positives = 58/124 (46%), Gaps = 1/124 (0%) Query: 2 RVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGYE 61 +L+ +DD+A + L ++V T D D+++ D+ +PD + ++ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 VLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARI-HAIVRRSK 120 +L ++ ++ P+L++S ++ GA DY+ KPF EL+ I A+ + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 121 GHAQ 124 ++ Sbjct: 125 RPSK 128
>MALTOSEBP#Maltose binding protein signature. Length = 396 Score = 40.5 bits (94), Expect = 7e-06 Identities = 42/157 (26%), Positives = 67/157 (42%), Gaps = 5/157 (3%) Query: 8 TAMGLALLASTGLAR-AEGVLNIY---NWGNYTSPDVIKKFEDKYNIKVTITDYDSNDTA 63 +A+ + +++ LA+ EG L I+ + G +V KKFE IKVT+ D + Sbjct: 13 SALTTMMFSASALAKIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEK 72 Query: 64 LAKIRQGGTGFDIAVPSQTYVPIWIKEGLLLETDPGKMENFKNVAPEWANPEFDPGRKYS 123 ++ G G DI + + + GLL E P K K W ++ G+ + Sbjct: 73 FPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYN-GKLIA 131 Query: 124 VPWAWGTIGVVVNTDAYKGPADTWGIVFNTPDELKGK 160 P A + ++ N D P TW + ELK K Sbjct: 132 YPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAK 168
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.7 bits (66), Expect = 0.024 Identities = 10/30 (33%), Positives = 15/30 (50%) Query: 43 TLLGPSGCGKTTLLRLIAGFDFPTAGEILL 72 L G G GK+TL+ + G DF + + Sbjct: 600 VLEGTGGIGKSTLINTLVGLDFFSDTHFDI 629
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 32.0 bits (73), Expect = 0.006 Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 8/84 (9%) Query: 2 SATGTGHNADLIVINGRVLTMDGGNPAAEAVAVKDGAIIAVGSRA------AIEELEGTA 55 T G D ++ N +L G A + +KDG I A+G + + G Sbjct: 60 QVTREGGAVDTVITNALILDHWGIVKAD--IGLKDGRIAAIGKAGNPDMQPGVTIIVGPG 117 Query: 56 TQVIDAKGGSVLPGFIEAHMHLFS 79 T+VI +G V G +++H+H Sbjct: 118 TEVIAGEGKIVTAGGMDSHIHFIC 141
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 63.9 bits (155), Expect = 1e-14 Identities = 26/146 (17%), Positives = 55/146 (37%), Gaps = 3/146 (2%) Query: 18 QPRQQRSSKVVDRILDAALILTREQGTRTPTTLAIAQRAGLSVGSVYQYFPNKEAILLDL 77 + +Q + + ILD AL L +QG + + IA+ AG++ G++Y +F +K + ++ Sbjct: 3 RKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI 62 Query: 78 ARRWLSSFPEVIERRIKVPRPTNREEFRREVRKLFIDTSSIYLENATLMPVI---EAISG 134 S+ E+ R + + T + + + E + Sbjct: 63 WELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGE 122 Query: 135 NADLRPIQDEYDEQIIALYAAWLRHV 160 A ++ Q + L+H Sbjct: 123 MAVVQQAQRNLCLESYDRIEQTLKHC 148
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 287 bits (737), Expect = 2e-97 Identities = 96/352 (27%), Positives = 175/352 (49%), Gaps = 9/352 (2%) Query: 8 DSKTEEATEKKVRDTIEQGKLPHSRETAILASFVAILVFTVFYAKDAVINLGMFLSMFLE 67 KTE+ T KK+RD ++G++ S+E A VA+ + + + + + E Sbjct: 3 GEKTEQPTPKKIRDARKKGQVAKSKEVVSTALIVALSAMLMGLSDYYFEHFSKLMLIPAE 62 Query: 68 K---PEAWPMNTETDVIDLYKIVMLEVGRAVVSLLVLLTVAGIGASVLQNMPQFVGERIR 124 + P + ++ D V+LE LL + + I + V+Q GE I+ Sbjct: 63 QSYLPFSQALSYVVDN------VLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIK 116 Query: 125 PQLSRISITKGWNRMFGAQGWVEFLKSLAKVGFAIAVLTFTLSEDHSKLLAGMITNPVAF 184 P + +I+ +G R+F + VEFLKS+ KV ++ + + LL Sbjct: 117 PDIKKINPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECI 176 Query: 185 GLVIRGIAVDILVAIVFVMGLIAAIDIVWSRFHWKQDLRMTKQEVKDEFKQSEGDPIVKS 244 ++ I ++V +I+ D + + + ++L+M+K E+K E+K+ EG P +KS Sbjct: 177 TPLLGQILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKS 236 Query: 245 RLRSLARDRARKRMMTAVPRATLIIANPTHFSIALKYVRDEDSAPLVVAKGQDLVALKIR 304 + R ++ + M V R+++++ANPTH +I + Y R E PLV K D +R Sbjct: 237 KRRQFHQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVR 296 Query: 305 EIAKEHNIPIFEDVALARSMYKQVSVDNVIPSQFYQAVAELVRIVYSKKAER 356 +IA+E +PI + + LAR++Y VD+ IP++ +A AE++R + + E+ Sbjct: 297 KIAEEEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLERQNIEK 348
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 171 bits (434), Expect = 1e-52 Identities = 75/331 (22%), Positives = 155/331 (46%), Gaps = 13/331 (3%) Query: 4 LTTLTRAQKAAAILVAMGKPSASRLLKFFKQEELKALIEGARLLRTIPQSDLERIVAEFE 63 ++ LT QKAA +LV++G +S++ K+ QEE+++L L TI + ++ EF+ Sbjct: 12 VSALTGKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKDNVLLEFK 71 Query: 64 AEFTEGAGLLD-SADRMDTILNESLSPEEMSAIMGNKKPEAAPEGPPPIWPDLEKLEPSR 122 + D +L +SL ++ I+ N + + + +P+ Sbjct: 72 ELMMAQEFIQKGGIDYARELLEKSLGTQKAVDIINNLGSALQSR----PFEFVRRADPAN 127 Query: 123 LGTFLAGEHPQTAAMVLSKLAPQAAASVLLTLTKPMRGEIIKRMVTMANVPDAAARIVEN 182 + F+ EHPQT A++LS L PQ A+ +L +L ++ + +R+ M R VE Sbjct: 128 ILNFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVREVER 187 Query: 183 RLR---ASVLAETSTKDTSAGQARVASVLNELDKPLLEEVMQDLEAAGTPDLDG-VRARL 238 L AS+ +E T + G V ++N D+ + +++ LE P+L ++ ++ Sbjct: 188 VLEKKLASLSSEDYTS--AGGVDNVVEIINMADRKTEKFIIESLEEE-DPELAEEIKKKM 244 Query: 239 FAFDDLPLLTQKARVLLFDGLSTELVTLALRGTSAALAEAVLSAIGARSRRMIEAELGQG 298 F F+D+ LL ++ + + + + AL+ + E + + R+ M++ ++ + Sbjct: 245 FVFEDIVLLDDRSIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDM-EF 303 Query: 299 SEGIPLADIMTARKTIVTTTIRLSREGAFEL 329 D+ +++ IV+ +L +G + Sbjct: 304 LGPTRRKDVEESQQKIVSLIRKLEEQGEIVI 334
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 85.0 bits (210), Expect = 2e-24 Identities = 36/94 (38%), Positives = 60/94 (63%), Gaps = 10/94 (10%) Query: 36 DAAFRAAAG-------ANSNVIMNIPVDVQIILGSTEMAVADLMALQKGSTVALNRRIGE 88 DA F+ G + ++IM+IPV + + LG T M + +L+ L +GS VAL+ GE Sbjct: 36 DAVFQQLGGGDVSGAMQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGE 95 Query: 89 PVDVVVNGRKIARGEITVLESDPSRFGIRLTEII 122 P+D+++NG IA+GE+ V+ ++G+R+T+II Sbjct: 96 PLDILINGYLIAQGEVVVVA---DKYGVRITDII 126
>FLGMOTORFLIM#Flagellar motor switch protein FliM signature. Length = 344 Score = 48.0 bits (114), Expect = 2e-08 Identities = 54/267 (20%), Positives = 107/267 (40%), Gaps = 12/267 (4%) Query: 35 MAERAAPLLQKSLTSELGVPVTVDLRAVEVSRVAE-ARSRAGDTFAMTIVASSTSSDAMT 93 M E A L SL+++L V V + +V+ E RS + I +A+ Sbjct: 58 MHETFARLTTTSLSAQLRSMVHVHVASVDQLTYEEFIRSIPTPSTLAVITMDPLKGNAV- 116 Query: 94 LVIDAPAIAIMVCTLFGGDPETPASPIERDLSQIEVDVSTMLFQQVAQALNGSGRRSLDL 153 L +D ++ LFGG + ++RDL+ IE V + ++ + S + +DL Sbjct: 117 LEVDPSITFSIIDRLFGGTGQAAK--VQRDLTDIENSVMEGVIVRILANVRESWTQVIDL 174 Query: 154 RLPVPRAMSGTEAKRHVLRDGAALRIVLGISTPADSGTVTVTMPQ------RIVLASRDS 207 R + + + + + V + + L + G + +P L+S+ Sbjct: 175 RPRLGQIETNPQFAQIVPPSEMVVLVTLETKVGEEEGMMNFCIPYITIEPIISKLSSQFW 234 Query: 208 AASTAGDDHGPSWRERFSEEVMRSTVALEATMPLARLTLGDLASLEVGQVIDFDET-AQS 266 +S + +++ + + A + RL++ D+ L VG +I +T Sbjct: 235 FSSV-RRSSTTQYMGVLRDKLSTVDMDVVAEVGSLRLSVRDILGLRVGDIIRLHDTHVGD 293 Query: 267 RARLSARGQTLFVCEFGKLGQNYTVRI 293 LS + F+C+ G +G+ +I Sbjct: 294 PFVLSIGNRKKFLCQPGVVGKKIAAQI 320
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 31.1 bits (70), Expect = 0.004 Identities = 8/32 (25%), Positives = 18/32 (56%) Query: 3 DSLYVALSAQMALERRLDTIADNVANANTVGF 34 + A+S A + L+T ++N+++ N G+ Sbjct: 2 SLINNAMSGLNAAQAALNTASNNISSYNVAGY 33
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.4 bits (68), Expect = 0.016 Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 158 QRVGTAFMTGVKVIDIFTPLCFGQRMGVFAG-SGVGKSTLLAMLAGADAF-DTVV 210 Q VG + G V + P C V G G+GKSTL+ L G D F DT Sbjct: 574 QLVGKYILMGH-VARVMEPGCKFDYSVVLEGTGGIGKSTLINTLVGLDFFSDTHF 627
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 29.9 bits (67), Expect = 0.003 Identities = 10/38 (26%), Positives = 19/38 (50%) Query: 97 NVNVLIEMADMTEANRSYEANLQVVKQARDLISMTIDL 134 VN+ E ++ + Y AN QV++ A + I++ Sbjct: 508 GVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545 Score = 28.4 bits (63), Expect = 0.009 Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 11/71 (15%) Query: 5 TAALKVAASGLGAQSERLRVVSENLANAQSTGTTPGADPYRRKTISFVSELDRASGAST- 63 ++ + A SGL A L S N+++ G Y R+T Sbjct: 1 SSLINNAMSGLNAAQAALNTASNNISSYNVAG-------YTRQTTIMAQANSTLGAGGWV 53 Query: 64 ---VEVNSIDR 71 V V+ + R Sbjct: 54 GNGVYVSGVQR 64
>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE signature. Length = 103 Score = 31.6 bits (71), Expect = 2e-04 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 2/73 (2%) Query: 37 TSFAEAVSQAASKTVNTLQNAEQVSLQALKG--DADTRQVVDAVMSAQQALQTAVAIRDK 94 SFA + A + +T A + + G V+ + A ++Q + +R+K Sbjct: 31 ISFAGQLHAALDRISDTQTAARTQAEKFTLGEPGVALNDVMTDMQKASVSMQMGIQVRNK 90 Query: 95 VVSAYLEVSRMGI 107 +V+AY EV M + Sbjct: 91 LVAAYQEVMSMQV 103
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 41.9 bits (98), Expect = 2e-06 Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 15/80 (18%) Query: 4 LAIAATGMNAQQTNLEVIANNIANINTTGYKRARAEFSDLLYQVDRTQGVPNRSNASLVP 63 + A +G+NA Q L +NNI++ N GY R S + Sbjct: 4 INNAMSGLNAAQAALNTASNNISSYNVAGYTRQT---------------TIMAQANSTLG 48 Query: 64 EGVSIGLGVKTTAVRNVHTQ 83 G +G GV + V+ + Sbjct: 49 AGGWVGNGVYVSGVQREYDA 68 Score = 39.9 bits (93), Expect = 7e-06 Identities = 10/41 (24%), Positives = 19/41 (46%) Query: 213 TIQQGYLEASNVDPVKEITELISAQRAYEMNSKVIQAADDM 253 + S V+ +E L Q+ Y N++V+Q A+ + Sbjct: 498 QLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAI 538
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 422 bits (1087), Expect = e-150 Identities = 226/354 (63%), Positives = 291/354 (82%) Query: 9 SSLPPGQVASRIKDIAQLQSSRDNQLVGYGLVIGLAGSGDSLRNSPFTEQSIRAMLENLG 68 S+ P SRIKDIA LQ+ RDNQL+GYGLV+GL G+GDSLR+SPFTEQS+RAML+NLG Sbjct: 20 STPPAQADTSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDSLRSSPFTEQSMRAMLQNLG 79 Query: 69 IATEGGSARAKNVAAVIVTANMPPYVQSGARIDIDVSSMGDATSLAGGTLIMTPLKAADG 128 I T+GG + AKN+AAV+VTAN+PP+ G+R+D+ VSS+GDATSL GG LIMT L ADG Sbjct: 80 ITTQGGQSNAKNIAAVMVTANLPPFASPGSRVDVTVSSLGDATSLRGGNLIMTSLSGADG 139 Query: 129 EIYAVGQGAVIVSGFTAKGQAEQLTQGVPTAGRVPNGAIVERSVKAEFDDQSTLTLQLRN 188 +IYAV QGA+IV+GF+A+G A LTQGV T+ RVPNGAI+ER + ++F D L LQLRN Sbjct: 140 QIYAVAQGALIVNGFSAQGDAATLTQGVTTSARVPNGAIIERELPSKFKDSVNLVLQLRN 199 Query: 189 PDFSTAIRIADAINDYTSQRFGMRVAGERDSRTVQIRRPKGVSAARFYAEIENLVVESDT 248 PDFSTA+R+AD +N + R+G +A RDS+ + +++P+ R AEIENL VE+DT Sbjct: 200 PDFSTAVRVADVVNAFARARYGDPIAEPRDSQEIAVQKPRVADLTRLMAEIENLTVETDT 259 Query: 249 PARVVIDERTGTIVIGNDVKISRVAISHGTLTVRITEAPRVVQPEPFSKGETAVEPFTAI 308 PA+VVI+ERTGTIVIG DV+ISRVA+S+GTLTV++TE+P+V+QP PFS+G+TAV+P T I Sbjct: 260 PAKVVINERTGTIVIGADVRISRVAVSYGTLTVQVTESPQVIQPAPFSRGQTAVQPQTDI 319 Query: 309 DATRPDARVAVLDGPDLQTLVSGLNRLGVKPDGIIAILQGIKSAGALQADLVLQ 362 A + ++VA+++GPDL+TLV+GLN +G+K DGIIAILQGIKSAGALQA+LVLQ Sbjct: 320 MAMQEGSKVAIVEGPDLRTLVAGLNSIGLKADGIIAILQGIKSAGALQAELVLQ 373
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 181 bits (461), Expect = 2e-59 Identities = 59/239 (24%), Positives = 97/239 (40%), Gaps = 38/239 (15%) Query: 11 VAALSGCG-----------TNLREVGKEPSLSPVGSGIDGGNTSALYKYPEPPRAPVKKF 59 V +L+GC T+ + V P +PV +G ++++ +P + Sbjct: 16 VLSLTGCAWIPSTPLVQGATSAQPV---PGPTPVANG-------SIFQSAQPINYGYQP- 64 Query: 60 SLWDDRQSRLFTDPRALSQGDILTVRIKINDRANFKNQNDRSRTANRKLGFDLSAQ---- 115 LF D R + GD LT+ ++ N A+ + + SR GFD + Sbjct: 65 ---------LFEDRRPRNIGDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVPRYLQG 115 Query: 116 WDKWSTAGKGAGALNSATDTTADGEIKRSETLELNVAAIVTDVLPNGNLMITGSQEVRVN 175 + A A G S T + V VL NGNL + G +++ +N Sbjct: 116 LFGNARADVEAS---GGNTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGEKQIAIN 172 Query: 176 AELRVLTIAGIVRPADIGAENTIPYERIAEARISYGGRGRISEIQQPAYGQQVLDQVLP 234 + +G+V P I NT+P ++A+ARI Y G G I+E Q + Q+ + P Sbjct: 173 QGTEFIRFSGVVNPRTISGSNTVPSTQVADARIEYVGNGYINEAQNMGWLQRFFLNLSP 231
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 264 bits (677), Expect = 7e-92 Identities = 102/244 (41%), Positives = 153/244 (62%), Gaps = 3/244 (1%) Query: 1 MKKFLLAAALIGAATSVAAAQQLD--LGGIGKADGATVGYIIQMFGLLTVLSVAPGLLIM 58 M++ L A ++ + A QL G + +Q +T L+ P +L+M Sbjct: 1 MRRLLSVAPVLLWLITPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLM 60 Query: 59 VTSFTRFVIAFSILRAGIGLQSTPANLILISLSLFMTFYVMAPTFDQAWNTGVKPLMDNQ 118 +TSFTR +I F +LR +G S P N +L+ L+LF+TF++M+P D+ + +P + + Sbjct: 61 MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEK 120 Query: 119 ISQTEAFEKISDPFRTFMLHNVRDKDFDLFADLARERGQVVAKETVDLRILVPAFMISEI 178 IS EA EK + P R FML R+ D LFA LA G + E V +RIL+PA++ SE+ Sbjct: 121 ISMQEALEKGAQPLREFMLRQTREADLGLFARLANT-GPLQGPEAVPMRILLPAYVTSEL 179 Query: 179 RRGFEIGFLIVLPFLVIDLIVATITMAMGMMMLPPTVVSLPFKILFFVLIDGWNLLVGSL 238 + F+IGF I +PFL+IDL++A++ MA+GMMM+PP ++LPFK++ FVL+DGW LLVGSL Sbjct: 180 KTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSL 239 Query: 239 VRSF 242 +SF Sbjct: 240 AQSF 243
>FLAGELLIN#Flagellin signature. Length = 507 Score = 71.6 bits (175), Expect = 5e-16 Identities = 48/319 (15%), Positives = 105/319 (32%), Gaps = 3/319 (0%) Query: 4 IMTNSAALTALQSLNATQNNLSTTQARISTGYRVSQASDNAAYWSIATTMRSDNQAMSTV 63 I TNS +L +LN +Q++LS+ R+S+G R++ A D+AA +IA S+ + ++ Sbjct: 4 INTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQA 63 Query: 64 SDSLGLGASKVDTAYTGMNSAITTINAIQQKLTGSY--GQTDAAKEKTQVEIAALQQQLK 121 S + G S T +N + +++ + +D+ + Q EI +++ Sbjct: 64 SRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEID 123 Query: 122 GYADSATFSGTNMLSVSTASGTAADVKIVSAFNRSSTGSVSLSTIDVNVESIKLYDSGAA 181 ++ F+G +LS + + ++ ++ ++ Sbjct: 124 RVSNQTQFNGVKVLSQDNQMKIQVGANDGETI-TIDLQKIDVKSLGLDGFNVNGPKEATV 182 Query: 182 PTAKGLLDTARLGTTGAATTTAQAPTLGAAPAAGDTYSVASLAIFSGTTAASDAQISQMM 241 K T A + + DT + A Sbjct: 183 GDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTDDAE 242 Query: 242 TVVDAALKDMTTAATKLGAAKSSIDLQKTFTQSLMDSIDRGVGQLVDADMNKESTRLQAL 301 L T + AK+ K + + N + ++ Sbjct: 243 NNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGKVSTT 302 Query: 302 QVQQQLGVQALSIANGSSQ 320 +++ + I G++ Sbjct: 303 INGEKVTLTVADITAGAAN 321 Score = 67.0 bits (163), Expect = 2e-14 Identities = 52/328 (15%), Positives = 103/328 (31%), Gaps = 2/328 (0%) Query: 2 ASIMTNSAALTALQSLNATQNNLSTTQARISTGYRVSQASDNAAYWSIATTMRSDNQAMS 61 A++ ++ + + + + +++G V+ + + + Sbjct: 180 ATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTD 239 Query: 62 TVSDSLGLGASKVDTAYTGMNSAITTINAIQQKLTGSYGQTDAAKEKTQVEIAALQQQLK 121 ++ + K + G A AI+ G + Sbjct: 240 DAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGKV 299 Query: 122 --GYADSATFSGTNMLSVSTASGTAADVKIVSAFNRSSTGSVSLSTIDVNVESIKLYDSG 179 ++ A+ AA ++ S ES KL D Sbjct: 300 STTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSDLE 359 Query: 180 AAPTAKGLLDTARLGTTGAATTTAQAPTLGAAPAAGDTYSVASLAIFSGTTAASDAQISQ 239 A KG G A TL D + + + AA+ + Sbjct: 360 ANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINEDAAAAKKSTAN 419 Query: 240 MMTVVDAALKDMTTAATKLGAAKSSIDLQKTFTQSLMDSIDRGVGQLVDADMNKESTRLQ 299 + +D+AL + + LGA ++ D T + + +++ ++ DAD E + + Sbjct: 420 PLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIEDADYATEVSNMS 479 Query: 300 ALQVQQQLGVQALSIANGSSQSILSLFR 327 Q+ QQ G L+ AN Q++LSL R Sbjct: 480 KAQILQQAGTSVLAQANQVPQNVLSLLR 507
>FLAGELLIN#Flagellin signature. Length = 507 Score = 73.5 bits (180), Expect = 2e-16 Identities = 54/323 (16%), Positives = 105/323 (32%), Gaps = 19/323 (5%) Query: 4 IMTNAAALTALQSLNATNKSLEHTQSRISTGYRVSEASDNAAYWSIATTMRSDNQALSTV 63 I TN+ +L +LN + SL R+S+G R++ A D+AA +IA S+ + L+ Sbjct: 4 INTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQA 63 Query: 64 QDALGLGASKVDTAYTGMNNVLTSIGQLKTKLL--STIGQTAAAKAKTQTEITTLQAQMK 121 G S T +N + ++ +++ + + + + Q EI ++ Sbjct: 64 SRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEID 123 Query: 122 SFADAATFSGSNYLSVTSTQ-----------VAAPNDGVQANAKIVASFNRSSSGAISLG 170 ++ F+G LS + + + + + FN + ++G Sbjct: 124 RVSNQTQFNGVKVLSQDNQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEATVG 183 Query: 171 TIDINVESTKLFDNGLSTAVKNQGTLDRKTSVYATAAAQNLYDTAYAAAIAGGGTDIAAN 230 + + ++ +D A K + ++ V T A AA TD A N Sbjct: 184 DLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTDDAEN 243 Query: 231 ------TAGQTAAGAVVPRIDNVSAFNLDITAAGVTDDIITQMIGKIDKVMSQLTDQATI 284 + A +T I TI Sbjct: 244 NTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGKVSTTI 303 Query: 285 LGAAKSSIDLQKTFTQSLMDSID 307 G + T + +D+ Sbjct: 304 NGEKVTLTVADITAGAANVDAAT 326 Score = 71.2 bits (174), Expect = 1e-15 Identities = 48/299 (16%), Positives = 93/299 (31%), Gaps = 8/299 (2%) Query: 61 STVQDALGLGASKVDTAYTGMNNVLTSIGQLKTKLLSTIGQTAAAKAKTQTEITTLQAQM 120 V N LT+ + T + + + + Sbjct: 212 GAVVTDTTAPTVPDKVYVNAANGQLTTDDAENNTAVDLFKTTKSTAGTAEAKAIAGAIKG 271 Query: 121 KSFADAATFSGSNYLSVTSTQVAAPNDGVQANAKIVASFNRSSSGAISLGTIDINVESTK 180 D + G + T + + + I + I+ G +++ + + Sbjct: 272 GKEGDTFDYKGV---TFTIDTKTGNDGNGKVSTTINGEKVTLTVADITAGAANVDAATLQ 328 Query: 181 LFDNGLSTAVKNQGTLDRKT-----SVYATAAAQNLYDTAYAAAIAGGGTDIAANTAGQT 235 N ++ V Q T D KT + A + + T AA Sbjct: 329 SSKNVYTSVVNGQFTFDDKTKNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTL 388 Query: 236 AAGAVVPRIDNVSAFNLDITAAGVTDDIITQMIGKIDKVMSQLTDQATILGAAKSSIDLQ 295 A + L A + ID +S++ + LGA ++ D Sbjct: 389 AGKTMFIDKTASGVSTLINEDAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSA 448 Query: 296 KTFTQSLMDSIDRGVGQLVDADMNKESTRLQALQVQQQLGIQALSIANSSSQSILSLFK 354 T + + +++ ++ DAD E + + Q+ QQ G L+ AN Q++LSL + Sbjct: 449 ITNLGNTVTNLNSARSRIEDADYATEVSNMSKAQILQQAGTSVLAQANQVPQNVLSLLR 507
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 376 bits (966), Expect = e-126 Identities = 141/568 (24%), Positives = 231/568 (40%), Gaps = 61/568 (10%) Query: 9 ISNLRGFGVKRLAMLAGIAVLVMGVIGIASVYLNRPAYDTLYVGLDRADVNQIGLVLGEA 68 + L L + ++ ++ P Y TL+ L D I L + Sbjct: 13 LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQM 72 Query: 69 GIGFDVGSDGTSVLVPAGTTAQARMLLAEKGLPTSANAGYELFDNVGAMGLTSFMQQITR 128 I + + ++ VPA + R+ LA++GLP G+EL D G++ F +Q+ Sbjct: 73 NIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQ-EKFGISQFSEQVNY 131 Query: 129 VRALEGEIARTIQSISGIKAARVHIVMSERANFRRDEQQPSASVVIR-YAGIDAEKS-AQ 186 RALEGE+ARTI+++ +K+ARVH+ M + + F R+++ PSASV + G ++ Sbjct: 132 QRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQIS 191 Query: 187 SIRHLVAAAVPGLSADKVTVLDSNGNLLAAGDDPSNTSAARTLGVEQTVEAQIGDNIRRA 246 ++ HLV++AV GL VT++D +G+LL + L VE++I I Sbjct: 192 AVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAI 251 Query: 247 LTPYLGPDNFRASVKAEVNTDTRQTEETIFDPNSRVERSVQSVRANENSNQKQASTPASV 306 L+P +G N A V A+++ ++ E + PN ++ R S Q A P V Sbjct: 252 LSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGGV 311 Query: 307 -------------------------EQNLPETQATSTEGPQTTSANDRKEEITNYEINSK 341 QN P+T TST + ++ E +NYE++ Sbjct: 312 PGALSNQPAPPNEAPIATPPTNQQNAQNTPQTS-TSTNSNSAGPRSTQRNETSNYEVDRT 370 Query: 342 KIATVSNGYTVTKMSIAVVVNQDRLKTILGKDATPEQIAKRVAEIQKMVTSATGLDDKRG 401 T N + ++S+AVVVN L T +Q+ + I+ + A G DKRG Sbjct: 371 IRHTKMNVGDIERLSVAVVVNYKTLADGKPLPLTADQMKQ----IEDLTREAMGFSDKRG 426 Query: 402 DVIDVSAVEF--IDGLDGEAI--PQAGMLDSIGQHAGTLINAGAFIVVVFLVAFFGLRPM 457 D ++V F +D GE Q +D + L +VV +++ +RP Sbjct: 427 DTLNVVNSPFSAVDNTGGELPFWQQQSFIDQLLAAGRWL----LVLVVAWILWRKAVRPQ 482 Query: 458 AAALTARATPALSGPNFDEVQRSLPTPEAAASADAGAAIGALPGSRPGTNPLDDLRQKIR 517 A A E A A+ L R R Sbjct: 483 LTRRVEEAKAA---------------QEQAQVRQETEE--AVEVRLSKDEQLQQRRANQR 525 Query: 518 ---PAPQERLARMVDLNEERTAQILRKW 542 +R+ M D + A ++R+W Sbjct: 526 LGAEVMSQRIREMSDNDPRVVALVIRQW 553
>FLGHOOKFLIK#Flagellar hook-length control protein signature. Length = 375 Score = 34.4 bits (78), Expect = 0.001 Identities = 29/128 (22%), Positives = 42/128 (32%), Gaps = 6/128 (4%) Query: 198 SQQVAAPAAEASAQRPKIEGDPLKPGDKAAESQV-AKVKAVPPAPPVKDAPLEPLAES-- 254 +Q +A A + D L A+ S + A + P V DAP L Sbjct: 101 AQTMALAAVADKNTTKDEKADDLNEDVTASLSALFAMLPGFDNTPKVTDAPSTVLPTEKP 160 Query: 255 ---GKDAAATMAKAGETKASGAKASDAKTGDAKTEDSKAVAAAKADTAAAAQETAAPEAG 311 K + + A A G A A+ + V + + AAA P Sbjct: 161 TLFTKLTSEQLTTAQPDDAPGTPAQPLTPLVAEAQSKAEVISTPSPVTAAASPLITPHQT 220 Query: 312 EKPPTAAA 319 + PT AA Sbjct: 221 QPLPTVAA 228
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 32.9 bits (75), Expect = 8e-04 Identities = 22/116 (18%), Positives = 43/116 (37%), Gaps = 11/116 (9%) Query: 2 IVIVDERELVTEGYNSLFDREGVACAGFAPGEFGEWVNSAADTDLRSVRAFLIGDCR--- 58 I++ D+ + N R G + +A D DL ++ D Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDL------VVTDVVMPD 59 Query: 59 -DGAISPRQIRDR-TGAPVIALSEQHSLENTLRLFESGVDDVIRKPVHIREILARI 112 + +I+ PV+ +S Q++ ++ E G D + KP + E++ I Sbjct: 60 ENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGII 115
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 44.6 bits (105), Expect = 6e-07 Identities = 14/43 (32%), Positives = 26/43 (60%) Query: 375 LENSNVDIAEELTDMIAAQRSYTANSKVFQTGSDLMDVLVNLK 417 S V++ EE ++ Q+ Y AN++V QT + + D L+N++ Sbjct: 504 QSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINIR 546 Score = 35.3 bits (81), Expect = 4e-04 Identities = 11/32 (34%), Positives = 20/32 (62%) Query: 9 TGVSGMNAQANRLSTTADNIANSDTTGYKRSS 40 +SG+NA L+T ++NI++ + GY R + Sbjct: 6 NAMSGLNAAQAALNTASNNISSYNVAGYTRQT 37
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 65.7 bits (160), Expect = 1e-13 Identities = 63/319 (19%), Positives = 122/319 (38%), Gaps = 27/319 (8%) Query: 4 SSALSIAQSALMSTARQTSVVTRNVSDASNPDYARRIAVVTSTAP----------GARSV 53 SS ++ A S L + + + N+S + Y R+ ++ G Sbjct: 1 SSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVS 60 Query: 54 DIQRVANDLLFRQNLGALSAYSGQNALYSGMDQLDVSVNGVDNASSPSTAIANLQQALQL 113 +QR + + Q A + SG A Y M ++D ++ + SS +T + + +LQ Sbjct: 61 GVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLS--TSTSSLATQMQDFFTSLQT 118 Query: 114 YATSPSNQNLGSSVIDAAKQVVRSLNEGSKAIQDFRTQTDGQIDTAVKDLNSLLGQFQDA 173 ++ + ++I ++ +V + ++D Q + I +V +N+ Q Sbjct: 119 LVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASL 178 Query: 174 NQAV--ISGTRSGTDVSDALDQRDALLKKIADYIPISTFTRGDNDMVITTGDGTTLFETI 231 N + ++G +G ++ LDQRD L+ ++ + + + IT +G +L Sbjct: 179 NDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSL---- 234 Query: 232 PRTVSFTPAAGYAAGAPGNTIYIDNVPVSAGSGGNTTA------SGKLAGLLQLRDGVAS 285 V + A AA V G+ GN +G L G+L R Sbjct: 235 ---VQGSTARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLD 291 Query: 286 TMQSQLDETARGLITAFAE 304 ++ L + A AF Sbjct: 292 QTRNTLGQLALAFAEAFNT 310 Score = 39.2 bits (91), Expect = 3e-05 Identities = 14/67 (20%), Positives = 35/67 (52%), Gaps = 4/67 (5%) Query: 415 LQSMRQQASTAADAKEALAQRSSEALSNATGVNVDQEMSLMLDLEHTYQASARMMKTVDD 474 +++ ++T + L+ + +GVN+D+E + + Y A+A++++T + Sbjct: 482 TATLKTSSATQGNVVTQLSNQQQSI----SGVNLDEEYGNLQRFQQYYLANAQVLQTANA 537 Query: 475 MLTALLN 481 + AL+N Sbjct: 538 IFDALIN 544
>TYPE3IMQPROT#Type III secretion system inner membrane Q protein family signature. Length = 86 Score = 56.3 bits (136), Expect = 2e-14 Identities = 21/77 (27%), Positives = 39/77 (50%) Query: 5 DALDIVQYAVWTVLTASAPVVLVAMAVGIGIALIQALTQIQEITLTFVPKIVAIMLVVAL 64 D + A++ VL S +VA +G+ + L Q +TQ+QE TL F K++ + L + L Sbjct: 3 DLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFL 62 Query: 65 TGPFIGGQISAFTNVIF 81 + G + ++ + Sbjct: 63 LSGWYGEVLLSYGRQVI 79
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 42.9 bits (101), Expect = 3e-06 Identities = 49/261 (18%), Positives = 85/261 (32%), Gaps = 11/261 (4%) Query: 69 MLFALVAGAIADSFDRRKVMLVAQTFMLVVSVLLTVFTYYNLLTPWTL--LAFTFLIDSG 126 A V GA++D F RR +L+VS+ Y + T L L ++ Sbjct: 57 FACAPVLGALSDRFGRR--------PVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGI 108 Query: 127 TALNSPSWQASVGDMVPRNKVPAAVALNSMGFNLTRSVGPAIGGIIVAAAGAAAAFAANA 186 T A + D+ ++ S F GP +GG++ + A FAA A Sbjct: 109 TGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAA 168 Query: 187 VSYIGLIIVMARWKPDVPVSTLPRETLGAAMGAGLRYVAMSPNIGKVLVRGAAFGFSAGA 246 ++ + + P A R+ + ++ Sbjct: 169 LNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQV 228 Query: 247 VLALLPLVARDVVKGDALTYGIMLGSFGI-GAVGGALISVRLRQLLSSETMVRCAFAGFA 305 AL + D DA T GI L +FGI ++ A+I+ + L + Sbjct: 229 PAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADG 288 Query: 306 VCAFNAALSHHAWQTSLGLLV 326 A + W +++ Sbjct: 289 TGYILLAFATRGWMAFPIMVL 309 Score = 37.9 bits (88), Expect = 1e-04 Identities = 35/158 (22%), Positives = 63/158 (39%), Gaps = 13/158 (8%) Query: 245 GAVLALLPLVARDVVKGD--ALTYGIMLGSFGIGAVGGALISVRLRQLLSSETMVRCAFA 302 G ++ +LP + RD+V + YGI+L + + A + L ++ + A Sbjct: 22 GLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLA 81 Query: 303 GFAVCAFNAALSHHAWQTSLGLLVGG---ACWVIALSHF-NVTVQMATPRWVVGRVLSVY 358 G AV A + W +G +V G A +A ++ ++T R + Sbjct: 82 GAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADITDGDERARHF------GF 135 Query: 359 QTATFG-GIALGSWIWGVVADAHGAETALIAAAIAMLA 395 +A FG G+ G + G++ AAA+ L Sbjct: 136 MSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLN 173 Score = 30.6 bits (69), Expect = 0.017 Identities = 36/173 (20%), Positives = 61/173 (35%), Gaps = 12/173 (6%) Query: 9 EGVSALAPFRHGIFRAVWSASLVSNFG-GLIQGVGAA-WMMTTIATSPYQVALVQASTT- 65 E ++ LA FR V +A + F L+ V AA W++ + + S Sbjct: 195 EALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAA 254 Query: 66 ---LPIMLFALVAGAIADSFDRRKVMLVAQTFMLVVSVLLTVFTYYNLLTPWTLLAFTFL 122 L + A++ G +A R+ +++ +LL T L Sbjct: 255 FGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRG----WMAFPIMVLL 310 Query: 123 IDSGTALNSPSWQASVGDMVPRNKVPAAVALNSMGFNLTRSVGPAIGGIIVAA 175 G + P+ QA + V + + +LT VGP + I AA Sbjct: 311 ASGGIGM--PALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAA 361
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 79.7 bits (196), Expect = 6e-20 Identities = 57/234 (24%), Positives = 89/234 (38%), Gaps = 21/234 (8%) Query: 8 NVLITGANKGIGLETARRLAAMGFNVWLGARDAERGEAAAKALRNEGLDVEWLALDVASD 67 ITGA +GIG AR LA+ G ++ + E+ E +L+ E E DV Sbjct: 10 IAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDS 69 Query: 68 DSVAAAARTLTARVSSLDVLVNNAGIA-PGYVDALGPDGRYERAPSRENVADMKATFDVN 126 ++ + + +D+LVN AG+ PG + +L + + +ATF VN Sbjct: 70 AAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDE-------------EWEATFSVN 116 Query: 127 VFGPVRVTQAFLPLLLAAPAARIVMVSSYLGSIARAAGNSQSPNVMGYGSSKTALNAITV 186 G +++ ++ + IV V S ++ Y SSK A T Sbjct: 117 STGVFNASRSVSKYMMDRRSGSIVTVGS-------NPAGVPRTSMAAYASSKAAAVMFTK 169 Query: 187 AFARELSPRGMMVNAAAPGYTATDLNAHRGTRTVQQAAEIIVQLAALKAGGPTG 240 EL+ + N +PG T TD+ I L K G P Sbjct: 170 CLGLELAEYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLK 223
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 32.7 bits (74), Expect = 0.003 Identities = 28/128 (21%), Positives = 49/128 (38%), Gaps = 11/128 (8%) Query: 276 IAVVAPENAQRANVPQIADEQAPEPEKDTPETIIAALPAKEIPLPDFAPRPKADVGAQPE 335 + +V P + + Q E EPE + P KE P+ P+PK P+ Sbjct: 47 VTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPE---PPKEAPVVIEKPKPK------PK 97 Query: 336 NVPFAMADATATTEQAVATAQAPANMPFGKADPAALAAAAAAADPAQ--VAINNIPVPTW 393 P + ++ V ++ PF PA L ++ A A ++ ++ + P Sbjct: 98 PKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRALS 157 Query: 394 RPERTLPA 401 R + PA Sbjct: 158 RNQPQYPA 165
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 488 bits (1259), Expect = e-172 Identities = 169/503 (33%), Positives = 262/503 (52%), Gaps = 25/503 (4%) Query: 3 GSILIVDDDPVQRRLLEAAVTRFGHTAIVVDGGEAGLDALDGPGARDICVVILDLVMPGL 62 +IL+ DDD R +L A++R G+ + + A D +V+ D+VMP Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIA---AGDGDLVVTDVVMPDE 60 Query: 63 DGIGVLKAMRERDITVPVIVQTAQGGIETVVLAMRHGAFDFVVKPASPDRLQASIANALK 122 + +L +++ +PV+V +AQ T + A GA+D++ KP L I AL Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL- 119 Query: 123 VEAVEGEVKRTSRKRGGLLTFRDMITHSPAMDRVIRLGQKAAGSSIPILIEGESGVGKEL 182 + + ++ S AM + R+ + + + ++I GESG GKEL Sbjct: 120 -AEPKRRPSKLEDDS---QDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKEL 175 Query: 183 VARAIQGSGDRRSKPFVTVNCGAIPDNLVESILFGHEKGSFTGATDKHTGKFVEAHSGTL 242 VARA+ G RR+ PFV +N AIP +L+ES LFGHEKG+FTGA + TG+F +A GTL Sbjct: 176 VARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTL 235 Query: 243 FLDEIGDLPLDVQVKLLRAVQEGEVDPVGGRSTVKVDIRLISATHRNLLQQVKDGKFRED 302 FLDEIGD+P+D Q +LLR +Q+GE VGGR+ ++ D+R+++AT+++L Q + G FRED Sbjct: 236 FLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFRED 295 Query: 303 LFYRLNVYPIFVPPLRDRRDDIPHLVTHFMEKVAPADPRRRLQGISPAALAVLEAYDWPG 362 L+YRLNV P+ +PPLRDR +DIP LV HF+++ ++ AL +++A+ WPG Sbjct: 296 LYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQA--EKEGLDVKRFDQEALELMKAHPWPG 353 Query: 363 NIRQLENAVFRASVLCEGDVLDVDDFPQIRAQVEGTVNLETDDAAPRLSSPPELRDEGGP 422 N+R+LEN V R + L DV+ + +E A S + +E Sbjct: 354 NVRELENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMR 413 Query: 423 AGDDAPAAEPDRPAVLQPRFGTLRALDERGNVRALADVELEMIKLAIDHYNGQMSEVARR 482 + + R LA++E +I A+ G + A Sbjct: 414 QYFASFGDALPPSGLYD---------------RVLAEMEYPLILAALTATRGNQIKAADL 458 Query: 483 LGIGRSTLYRKLKEYGIDPETGR 505 LG+ R+TL +K++E G+ Sbjct: 459 LGLNRNTLRKKIRELGVSVYRSS 481
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 32.6 bits (74), Expect = 9e-04 Identities = 22/125 (17%), Positives = 32/125 (25%), Gaps = 3/125 (2%) Query: 74 AQASTGGAKAASQPPAALMSTPAAAKSARAAAKAAPAKPAAKAAPAKAATAKSAAPKPAA 133 A A +A PP + P P K K Sbjct: 56 APADLEPPQAVQPPPEP---VVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVE 112 Query: 134 AKPATSKPAATAASSAKSSAAPKPAAAKKAAPAAAKPAAGKSDNLRRLIGIGPVNEKLLK 193 KP + +S + AP + A A +KP + R L P + Sbjct: 113 QPKRDVKPVESRPASPFENTAPARPTSSTATAATSKPVTSVASGPRALSRNQPQYPARAQ 172 Query: 194 AQGVT 198 A + Sbjct: 173 ALRIE 177
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 107 bits (268), Expect = 5e-30 Identities = 75/261 (28%), Positives = 114/261 (43%), Gaps = 15/261 (5%) Query: 10 VAGKTALVTGAATGIGRMAAAALVKAGASVMIASRKGEDCIKVANAFNGLGAPGRAEGFA 69 + GK A +TGAA GIG A L GA + E KV ++ AE F Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEAR--HAEAFP 63 Query: 70 GDVSSEAGIAALVAEVKARTGKLGILINNAGVSWGAPLESFPYSAWAKVLGVNVTAVFHL 129 DV A I + A ++ G + IL+N AGV + S W VN T VF+ Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 130 TRELLPLLEAAASDADPARVINLGSVMGTQPLADDAYSYTASKAAVHHLTRTLALEFAAR 189 +R + + S + ++ +GS P A +Y +SKAA T+ L LE A Sbjct: 124 SRSVSKYMMDRRSGS----IVTVGSNPAGVPRTSMA-AYASSKAAAVMFTKCLGLELAEY 178 Query: 190 RITVNAFAPGPFQSRMT-AFATGTDEQAKHVGGH-------VPIGRIGAPDDIAGATLYL 241 I N +PG ++ M + + + + G +P+ ++ P DIA A L+L Sbjct: 179 NIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFL 238 Query: 242 CSRAGSYVTGAILPIDGGQSV 262 S ++T L +DGG ++ Sbjct: 239 VSGQAGHITMHNLCVDGGATL 259
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 103 bits (259), Expect = 7e-29 Identities = 69/256 (26%), Positives = 115/256 (44%), Gaps = 12/256 (4%) Query: 5 DGATVLITGAAGGLGRGAAKGFASEGARLVLSDIDEKALADLAATLPAETAI---LAGNV 61 +G ITGAA G+G A+ AS+GA + D + + L + ++L AE +V Sbjct: 7 EGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADV 66 Query: 62 ADEKLSEDLVRLAVEKFGRLDVTVNNAGIVQSFVRLPQVPSDEARRVLEIDLLGVFYAMK 121 D +++ + G +D+ VN AG+++ + + + +E ++ GVF A + Sbjct: 67 RDSAAIDEITARIEREMGPIDILVNVAGVLRPGL-IHSLSDEEWEATFSVNSTGVFNASR 125 Query: 122 HQIPQMERQFRATAKGGAIVNIASVAGLVGAPKLSVYAAAKHGVVGLTKSAAAEYATKGV 181 M + + G+IV + S V ++ YA++K V TK E A + Sbjct: 126 SVSKYMMDR-----RSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNI 180 Query: 182 RINAICPAHTRTAMVDSFVRASGAPE---AEALAELTRGVPMKRVAEVDEITTAILFAAD 238 R N + P T T M S E +L G+P+K++A+ +I A+LF Sbjct: 181 RCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVS 240 Query: 239 PANSFMTGHALAVDGG 254 +T H L VDGG Sbjct: 241 GQAGHITMHNLCVDGG 256
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 72.4 bits (177), Expect = 8e-18 Identities = 27/173 (15%), Positives = 63/173 (36%), Gaps = 9/173 (5%) Query: 7 KRREKQKAELRSELVAAAHKLVQEEGYEGLTIRKLAKRVGYAPMSVYSYFADKQDILFAL 66 ++ +++ E R ++ A +L ++G ++ ++AK G ++Y +F DK D+ + Sbjct: 3 RKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI 62 Query: 67 AEDAFETLARRIEE---HPSDDPVEALQAVMTEYAAFGLGNPNEYRTVFMTEKTRPPEGQ 123 E + + E DP+ L+ ++ + + + G+ Sbjct: 63 WELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGE 122 Query: 124 SF---QEMHEANPAMKALITR-VEACVAAGKLHG--DPRAIATMLWAVGHGTI 170 Q I + ++ C+ A L R A ++ G + Sbjct: 123 MAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLM 175
>CHANNELTSX#Nucleoside-specific channel-forming protein Tsx signature. Length = 294 Score = 32.3 bits (73), Expect = 1e-04 Identities = 17/30 (56%), Positives = 20/30 (66%), Gaps = 1/30 (3%) Query: 1 MKKTLLTLAAVLALSGSAFAASATQPVKHQ 30 MKKTLL AV+ALS + FAA A + K Q Sbjct: 1 MKKTLLAAGAVVALS-TTFAAGAAENDKPQ 29
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 109 bits (273), Expect = 7e-31 Identities = 74/257 (28%), Positives = 116/257 (45%), Gaps = 8/257 (3%) Query: 6 ALANKIAIVTGASSGIGRATAKLFAEEGARVVVAARRQAELDTLVAEISDAEGTAVALAG 65 + KIA +TGA+ GIG A A+ A +GA + +L+ +V+ + A A Sbjct: 5 GIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPA 64 Query: 66 DVRDEAYAKALVDLAVESFGGLDVAFNNAGAVGQMGPISGLSLEGWRETLDTNLTSAFLG 125 DVRD A + G +D+ N AG V + G I LS E W T N T F Sbjct: 65 DVRDSAAIDEITARIEREMGPIDILVNVAG-VLRPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 126 AKYQVPAMIERGGGSLIFTSTFVGHTIGMPGMTSYAASKAGLIGLTQVLAAEHGPQGVRV 185 ++ M++R GS++ + M +YA+SKA + T+ L E +R Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPRT-SMAAYASSKAAAVMFTKCLGLELAEYNIRC 182 Query: 186 NALLPGGTDTPA--SITNAPDAGPEVLAFVQALH----ALKRMAQPEEIARSALYLASDA 239 N + PG T+T S+ + +V+ LK++A+P +IA + L+L S Sbjct: 183 NIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQ 242 Query: 240 SSFTTGTALFADGGVSI 256 + T L DGG ++ Sbjct: 243 AGHITMHNLCVDGGATL 259
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 47.6 bits (113), Expect = 6e-09 Identities = 23/94 (24%), Positives = 36/94 (38%) Query: 144 YRKAGRTQDAFNDFQKAIQLDTTDARAYHNRGLIYQSQGQHKFAIEDFSTAISLAPDAAE 203 ++G+ +DA FQ LD D+R + G Q+ GQ+ AI +S + Sbjct: 46 QYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIKEPR 105 Query: 204 PYNGRGLSYLATGDEDNAFSDFNMAIKLDGQNAE 237 L G+ A S +A +L E Sbjct: 106 FPFHAAECLLQKGELAEAESGLFLAQELIADKTE 139 Score = 36.8 bits (85), Expect = 3e-05 Identities = 17/107 (15%), Positives = 36/107 (33%), Gaps = 3/107 (2%) Query: 171 YHNRGLIYQSQGQHKFAIEDFSTAISLAPDAAEPYNGRGLSYLATGDEDNAFSDFNMAIK 230 ++ G+++ A + F L + + G G A G D A ++ Sbjct: 39 LYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAI 98 Query: 231 LDGQNAEAWANQALIYERRGDKAKAAKSYKEAVRL---NPNYQPAKD 274 +D + + A ++G+ A+A A L ++ Sbjct: 99 MDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELIADKTEFKELST 145 Score = 30.3 bits (68), Expect = 0.005 Identities = 11/70 (15%), Positives = 23/70 (32%) Query: 50 ENISSLSAVIQRNPQDPEGYNVRGSAYGRGGQYQAALKDFNQAIQLNPNFYQAYSNRALI 109 + A+ + D + G+ GQY A+ ++ ++ + + A Sbjct: 54 DAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIKEPRFPFHAAEC 113 Query: 110 QRFLGNQAAA 119 G A A Sbjct: 114 LLQKGELAEA 123 Score = 28.7 bits (64), Expect = 0.019 Identities = 14/101 (13%), Positives = 31/101 (30%) Query: 63 PQDPEGYNVRGSAYGRGGQYQAALKDFNQAIQLNPNFYQAYSNRALIQRFLGNQAAALGD 122 E + G+Y+ A K F L+ + + ++ +G A+ Sbjct: 33 SDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHS 92 Query: 123 YNKSIQINGNYDAAYIGRGNLYRKAGRTQDAFNDFQKAIQL 163 Y+ ++ + G +A + A +L Sbjct: 93 YSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQEL 133
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 71.8 bits (176), Expect = 1e-15 Identities = 68/450 (15%), Positives = 155/450 (34%), Gaps = 28/450 (6%) Query: 23 FCFISLGILLHATNETMVATVMPAMVGELAGVQ-LVGWSLAIYELGAIVAGAAAGRLVSY 81 C +S NE ++ +P + + W + L + A G+L Sbjct: 19 LCILSF---FSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQ 75 Query: 82 VALRTNMVVAALLYAAGALICATSPSM-QLFLAGRLIEGLGGGALVSLAFVSVERLFSRA 140 + ++ ++ ++ G++I S L + R I+G G A +L V V R + Sbjct: 76 LGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKE 135 Query: 141 IWPQLFGIMSAIWGVAAFSGPLLGALMTEFLSWRWAFGVFTLGGATMALASFLVLNTPEA 200 + FG++ +I + GP +G ++ ++ W + + + T+ FL+ + Sbjct: 136 NRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMI---TIITVPFLMKLLKKE 192 Query: 201 KKPSTSAGRTPPFPFAALACLAVAVVLIASAGVDIALLRSSLLIVLGLAGLALFFYIDAL 260 + F + ++V +V + S + L ++ L+ ++ + Sbjct: 193 VR------IKGHFDIKGIILMSVGIVFF------MLFTTSYSISFLIVSVLSFLIFVKHI 240 Query: 261 RPRSRLF-PARLFSWRTPVGAGMTMVAAFSVATCSFGVYGPLLLTSLHDIPLLTTGYIIA 319 R + F L P G+ F P ++ +H + G +I Sbjct: 241 RKVTDPFVDPGLGKNI-PFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVII 299 Query: 320 AESIAWSILSILVAN--APPQRERLIIVTGALMIAAGIAGFAYTIPLGSIPLILICALLQ 377 I+ + + ++ G ++ ++ + + + I + Sbjct: 300 FPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASF-LLETTSWFMTIIIVFV 358 Query: 378 GGGFGIAWPFLTRVIVASAPDDEQTIASAAVPTMQRIGYAVGAALAGIVANASGFSQGL- 436 GG ++ ++ +S E + + + G A+ G + + Q L Sbjct: 359 LGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSIPLLDQRLL 418 Query: 437 --NHDAAANVASWLFLAFVPLGILGCLAAL 464 D + + S L L F + ++ L L Sbjct: 419 PMEVDQSTYLYSNLLLLFSGIIVISWLVTL 448
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 105 bits (263), Expect = 2e-28 Identities = 38/127 (29%), Positives = 61/127 (48%) Query: 7 RILVVDDEPPIRKLLRVGLGSQGYAISEAPNAKVAIELMEQEKPDLVLLDLGLPGMGGHE 66 ILV DD+ IR +L L GY + NA + DLV+ D+ +P + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 67 LLRKWRDEGLDIPVVILSSRTDEAGIVNALELGADDYVTKPFGMNELVARIRVALRHKFQ 126 LL + + D+PV+++S++ + A E GA DY+ KPF + EL+ I AL + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 127 QQGEKPV 133 + + Sbjct: 125 RPSKLED 131
>PF06580#Sensor histidine kinase Length = 349 Score = 35.6 bits (82), Expect = 7e-04 Identities = 28/129 (21%), Positives = 53/129 (41%), Gaps = 26/129 (20%) Query: 766 KIEVDIPPDLPMLKLDPVLFEQVLFNLLDNASKY----SPPGSTIRLQGWADNGSVIVQI 821 + E I P + +++ P + Q L ++N K+ P G I L+G DNG+V +++ Sbjct: 241 QFENQINPAIMDVQV-PPMLVQTL---VENGIKHGIAQLPQGGKILLKGTKDNGTVTLEV 296 Query: 822 MDEGPGIPSHDLERVFDTFYRVRKGDQVRAGTGLGLSICRGFVESMGGTISAANRTDRPG 881 + G + E TG GL R ++ + GT + +++ G Sbjct: 297 ENTGSLALKNTKE-----------------STGTGLQNVRERLQMLYGTEAQIKLSEKQG 339 Query: 882 AA-FTIRMP 889 + +P Sbjct: 340 KVNAMVLIP 348
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 37.3 bits (86), Expect = 5e-05 Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 10/96 (10%) Query: 3 LQGKVALVAGGTRGAGRGIAVELGAAGATVYVTGRSTRAQQSEYARPETIEETAELVTAN 62 ++GK+A + G +G G +A L + GA + PE +E+ + A Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVD----------YNPEKLEKVVSSLKAE 55 Query: 63 GGSGIAVQADHLVADDVRGLIERIRKEQGRLDILVN 98 A AD + + + RI +E G +DILVN Sbjct: 56 ARHAEAFPADVRDSAAIDEITARIEREMGPIDILVN 91
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 50.8 bits (121), Expect = 3e-10 Identities = 17/87 (19%), Positives = 35/87 (40%) Query: 10 KMTRPKTQPDEQVLEAALRLIHEHGPEALTFERLAKACGLSGATLVQRFGNKARLKQRTL 69 K + + + +L+ ALRL + G + + +AKA G++ + F +K+ L Sbjct: 4 KTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIW 63 Query: 70 LHAWDGLDDKTRTLAAAVPKTPAGAIE 96 + + + A P P + Sbjct: 64 ELSESNIGELELEYQAKFPGDPLSVLR 90
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 37.2 bits (86), Expect = 1e-04 Identities = 29/166 (17%), Positives = 63/166 (37%), Gaps = 4/166 (2%) Query: 35 LGVFGLVTAEFLPASLLTPMARDLGVTEGVAGQAVTATAIVGAIAAPTMAIITRRMD-RR 93 L F ++ L SL +A D TA + +I ++ ++ +R Sbjct: 22 LSFFSVLNEMVLNVSLPD-IANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKR 80 Query: 94 LVMWMLTSFLILSNLLATFAASLPMLLLARVVLGVALGGFWAMSAAMALRLVPMRLMPRA 153 L+++ + S + + +L++AR + G F A+ + R +P +A Sbjct: 81 LLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKA 140 Query: 154 MSIILTGVSLATVTAAPLGAYVGDI--WGWRTAFMIATIVGALALL 197 +I + V++ +G + W + + TI+ L+ Sbjct: 141 FGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLM 186
>PF06580#Sensor histidine kinase Length = 349 Score = 31.8 bits (72), Expect = 0.002 Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 1/38 (2%) Query: 79 AKLREALR-AELKNLQMQLGATFLFVTHDQIEAMSMGD 115 K+ + A+L L+ Q+ F+F + I A+ + D Sbjct: 152 WKMASMAQEAQLMALKAQINPHFMFNALNNIRALILED 189
>PF05272#Virulence-associated E family protein Length = 892 Score = 32.0 bits (72), Expect = 0.004 Identities = 17/82 (20%), Positives = 25/82 (30%), Gaps = 19/82 (23%) Query: 31 VVCLLGPSGCGKTTTLRVIAGLESVTDGEVVIAGKVMNNLPPEKRDIAMVFQFYALYPSA 90 V L G G GK+T + + GL+ +D I +D Y Sbjct: 598 SVVLEGTGGIGKSTLINTLVGLDFFSDTHFDI---------GTGKDSYEQIAGIVAY--- 645 Query: 91 SVGENIAFPLYHDGISRAERTA 112 + E RA+ A Sbjct: 646 ELSE-------MTAFRRADAEA 660
>MALTOSEBP#Maltose binding protein signature. Length = 396 Score = 59.7 bits (144), Expect = 6e-12 Identities = 92/369 (24%), Positives = 159/369 (43%), Gaps = 57/369 (15%) Query: 58 VKVNLEFVPYEGLHDKTVLAQGSGGGYDVVLFDVIWPAEYATNKVLVDVSSKITDDMKKG 117 +KV +E + L +K +G G D++ + YA + +L +++ + Sbjct: 59 IKVTVEHP--DKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPD--KAFQDK 114 Query: 118 VLPGAWTTVQYDGKYYGMPWILDTKYLFYNKDILEKAGIKTPPKTWEELGAQAKIIQDKG 177 + P W V+Y+GK P ++ L YNKD+L PPKTWEE+ A K ++ KG Sbjct: 115 LYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLL-----PNPPKTWEEIPALDKELKAKG 169 Query: 178 LLKTPIAWSWSQAEAAICDYTT--LVSAYGGDFLK--DGKPDFQ-----NGGGLSALKYM 228 K+ + ++ + Y T L++A GG K +GK D + N G + L ++ Sbjct: 170 --KSALMFNLQEP------YFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFL 221 Query: 229 VDSYKSGLTNPNSKEFLEEDVRKVFENGDAAFALNWTYMYNMANDPKDSKVAGKVGVVPA 288 VD K+ N ++ + E F G+ A +N + + ++ SKV GV Sbjct: 222 VDLIKNKHMNADTDYSIAE---AAFNKGETAMTINGPWAW---SNIDTSKV--NYGVTVL 273 Query: 289 PGVTGISEVSAVNGSMGLGVTAVSKHPDEAWKYIE--YMTSQATQNQYAKLSLPIWASSY 346 P G V G + G+ A S + + A +++E +T + + A + Sbjct: 274 PTFKGQPSKPFV-GVLSAGINAASPNKELAKEFLENYLLTDEGLE-----------AVNK 321 Query: 347 DDP----AVTKGQEEL-----IAAAKLGLAAMYPRPTTPKYQELSTALQQAIQESLLGQS 397 D P A+ +EEL IAA P P+ A++ A+ + G+ Sbjct: 322 DKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQ 381 Query: 398 SPEDALKTA 406 + ++ALK A Sbjct: 382 TVDEALKDA 390
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.8 bits (69), Expect = 0.009 Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 9/56 (16%) Query: 32 LVLLGSSGCGKSTLLNIIAGLAEATSGDVLIGGRSILGVHPKNRDIAMVFQSYALY 87 +VL G+ G GKSTL+N + GL + IG +D Y Sbjct: 599 VVLEGTGGIGKSTLINTLVGLDFFSDTHFDIG---------TGKDSYEQIAGIVAY 645
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 56.9 bits (137), Expect = 2e-12 Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 1/86 (1%) Query: 1 MRAQRPNSREKILAAAADVARESGPGSLSLDAVASRAGVSKGGLLYNFPTKAKLMQGLVE 60 + + +R+ IL A + + G S SL +A AGV++G + ++F K+ L + E Sbjct: 5 TKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWE 64 Query: 61 GYLRDFEQALETAGSNDDGSNPLAVY 86 + + +PL+V Sbjct: 65 LSESNIGELEL-EYQAKFPGDPLSVL 89
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 42.9 bits (101), Expect = 2e-06 Identities = 24/125 (19%), Positives = 41/125 (32%), Gaps = 9/125 (7%) Query: 75 SSWTP---GVEAIGTVRAVRGVDLTVE--TAGIVKEIPFHANQKVAANAVLLQLDDAVER 129 S A G + G ++ IVKEI + V VLL+L Sbjct: 75 SVLGQVEIVATANGKL-THSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAE 133 Query: 130 ADLDAQKAQ---AALDQVSLTRAIELTRRGVGSDSTLDTARAAASASASQVTKLQAVLDQ 186 AD ++ A L+Q + L + S +V +L +++ + Sbjct: 134 ADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKE 193 Query: 187 KQLTA 191 + T Sbjct: 194 QFSTW 198 Score = 34.4 bits (79), Expect = 8e-04 Identities = 27/160 (16%), Positives = 56/160 (35%), Gaps = 10/160 (6%) Query: 110 ANQKVAANAVLLQLDDAVE-RADLDAQKAQAALDQVSLTRAIELTRRGVGSD------ST 162 Q +A +AVL Q + VE +L K+Q + + A + + V Sbjct: 245 HKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSA-KEEYQLVTQLFKNEILDK 303 Query: 163 LDTARAAASASASQVTKLQAVLDQKQLTAPFAGTVGIPKI-DIGQYMAPGTAVVTL-QDL 220 L ++ K + + AP + V K+ G + ++ + + Sbjct: 304 LRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPED 363 Query: 221 DTMRVDFSIPEQQLPLLKIGQTVRLGLSGADMPFAGEIRG 260 DT+ V + + + + +GQ + + G + G Sbjct: 364 DTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVG 403
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 831 bits (2147), Expect = 0.0 Identities = 339/1032 (32%), Positives = 551/1032 (53%), Gaps = 29/1032 (2%) Query: 4 SDLFIRRPVLSTVLGCLILLLGFQGIFNLSIRQYPKVDETAITITTAYPGASADLIQGFI 63 ++ FIRRP+ + VL ++++ G I L + QYP + A++++ YPGA A +Q + Sbjct: 2 ANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTV 61 Query: 64 SAPIARAVASTENIDYVTSSS-RPSSSTVTVQMKLGSNPDVALTEVLSKVQGVRGTLPDA 122 + I + + +N+ Y++S+S S T+T+ + G++PD+A +V +K+Q LP Sbjct: 62 TQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQE 121 Query: 123 SKDPVIVKGTGQQFAMMYISM--QNPNMTKEQLTEYIERVIRPRMSTVEGVADVQIFGAQ 180 + I +M NP T++ +++Y+ ++ +S + GV DVQ+FGAQ Sbjct: 122 VQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGAQ 181 Query: 181 EYSMRVWIDPIRLAARGVTAAEVLTAINNSNFLSAPGNTQNEYVVS------SISVRSTL 234 Y+MR+W+D L +T +V+ + N A G + SI ++ Sbjct: 182 -YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240 Query: 235 QTPEAFAELPLR-STDGNVVRLRDVARVELGAANTDTRVSFNGKPGTFLAIFPTPAANPL 293 + PE F ++ LR ++DG+VVRL+DVARVELG N + NGKP L I AN L Sbjct: 241 KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300 Query: 294 TTAAALTKLVPQIQETLPKGMTIEVVYDATGQISASIEEVFKTIGEAVAIVVVVILLFLG 353 TA A+ + ++Q P+GM + YD T + SI EV KT+ EA+ +V +V+ LFL Sbjct: 301 DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360 Query: 354 SFRSVMMPIITIPLSLIGVCFLLFAVGYSINLLSLLAMVLAIGLVVDDAIVVVENIHRHM 413 + R+ ++P I +P+ L+G +L A GYSIN L++ MVLAIGL+VDDAIVVVEN+ R M Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 Query: 414 EEDHMTPMQAAFSGMREIASAIVAMTMTLAAVFAPLAFTGGLTGALFREFAVTLAGSVVL 473 ED + P +A M +I A+V + M L+AVF P+AF GG TGA++R+F++T+ ++ L Sbjct: 421 MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480 Query: 474 SGVIAVTITPMMSARLLKAGT------PGRFQRIVDGIFARVEHVYERAVTGSLNYRPLT 527 S ++A+ +TP + A LLK + G F + F + Y +V L Sbjct: 481 SVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRY 540 Query: 528 LIIVLALVGVTGFMFTKTSSELAPEEDQGFLLSLVTAPTYATSDYTETYVNQMLGLV--- 584 L+I +V +F + S PEEDQG L+++ P AT + T+ ++Q+ Sbjct: 541 LLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKN 600 Query: 585 -RDIPETRAQFSAVAFGGTTNSAFVGF-AFKDWAERKRNSKELQADI---TARLAKVAGV 639 + E+ + +F G +A + F + K W ER + +A I L K+ Sbjct: 601 EKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDG 660 Query: 640 QAFVFAPPT--LPGSGGGLPIALVVRSTGDSAEVYKAAEQIKNKA-QASGRFIVVQNSMS 696 F P G+ G L+ ++ + +A Q+ A Q + V+ + Sbjct: 661 FVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGL 720 Query: 697 YDSPQVTVTIDRDRAAALNLPIADIGRTLTLLVGGAEVAQFDRDSNSYDIIPQVPQQFRD 756 D+ Q + +D+++A AL + ++DI +T++ +GG V F + Q +FR Sbjct: 721 EDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRM 780 Query: 757 NPERLGEYFVRSVTGEMVPLSAVVNISNNASPAAIEQFNQLNSSTISALPLPGVTTGDGL 816 PE + + +VRS GEMVP SA +E++N L S I PG ++GD + Sbjct: 781 LPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAM 840 Query: 817 KVLEDIARESLPDTFFIDYSGQSRQEKEQGNTILIAFAAAVIVIYLVLAAQFESFRDPLI 876 ++E++A + LP D++G S QE+ GN A + +V++L LAA +ES+ P+ Sbjct: 841 ALMENLASK-LPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVS 899 Query: 877 IMMAVPLSIFGAIVPLNLGLGTLNIYTQVGLITLIGLITKHGILLVEFANQQREAHGMRR 936 +M+ VPL I G ++ L ++Y VGL+T IGL K+ IL+VEFA E G Sbjct: 900 VMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGV 959 Query: 937 RDAIIASAKVRLRPILMTTAAMALGVVPLITSSGAGAAARYSMGLVIFTGILVGTMFTLF 996 +A + + ++RLRPILMT+ A LGV+PL S+GAG+ A+ ++G+ + G++ T+ +F Sbjct: 960 VEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIF 1019 Query: 997 VVPMFYTFIASK 1008 VP+F+ I Sbjct: 1020 FVPVFFVVIRRC 1031
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 47.9 bits (114), Expect = 1e-08 Identities = 32/131 (24%), Positives = 51/131 (38%), Gaps = 4/131 (3%) Query: 4 RAVIALVSVADVVATELADHLERRGHDVRQARQPWEAESLLAGGGIDVVVVGDSLSQAEG 63 A I + + T L L R G+DVR +A G D+VV + Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 64 RDLLRRYGGQGEGGRDGPDFILICRPSDLVDKVLALELGAADVVESPLNVRELAARVGGL 123 DLL R + R +++ + + + A E GA D + P ++ EL +G Sbjct: 63 FDLLPRI----KKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRA 118 Query: 124 LSRRGRGTQEL 134 L+ R +L Sbjct: 119 LAEPKRRPSKL 129
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 88.7 bits (220), Expect = 2e-22 Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 2/133 (1%) Query: 2 RARIVIVEDEPDLRDAVAEYLGAAGYDVATAETAAAARSLIETQAFHLAILDIAMPGEDG 61 A I++ +D+ +R + + L AGYDV AA I L + D+ MP E+ Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 62 LSLGRWLRSRMP-IGIIYATAAGTALDRIVGLELGADDYIVKPYELREVLARVRSVL-RR 119 L ++ P + ++ +A T + I E GA DY+ KP++L E++ + L Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122 Query: 120 VPQPTELLDRKTR 132 +P++L D Sbjct: 123 KRRPSKLEDDSQD 135
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 54.5 bits (131), Expect = 9e-10 Identities = 25/113 (22%), Positives = 42/113 (37%), Gaps = 5/113 (4%) Query: 560 HALIIDDEPDVAGSLSDILELMGIKSRIAPVWESGAATLSGHIPPDIVFSDLRMPGTSGM 619 L+ DD+ + L+ L G RI + ++ D+V +D+ MP + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAG-DGDLVVTDVVMPDENAF 63 Query: 620 AIYRELLAERPELARRFVLVTGDLIGAKAEIEALPAQQRPQILEKPFSTLDVR 672 + + RP+L VLV I+A L KPF ++ Sbjct: 64 DLLPRIKKARPDLP---VLVMSAQNTFMTAIKASEKGAY-DYLPKPFDLTELI 112
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 30.2 bits (68), Expect = 0.013 Identities = 64/337 (18%), Positives = 114/337 (33%), Gaps = 30/337 (8%) Query: 33 PQIPVFLTRLDIS---KFTLGLLILLFGAGAVTAMTWCGHLISKHGSRTVLRWFGLCGSL 89 P +P L L S G+L+ L+ G L + G R VL ++ Sbjct: 26 PVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAV 85 Query: 90 GLLVVALAPNLPLAAIAMFIFGGSIGGMDVAMNANAVVV---ERKMSRAIMSSSHGFWSL 146 ++A AP L + I + G + VA A + ER MS+ GF Sbjct: 86 DYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADITDGDERARHFGFMSACFGF--- 142 Query: 147 GGFAGGGLGGFAIQHYGHLAHAAVVTVLAFAAIAMAVGYLV------AEDKP------QA 194 G AG LGG HA A + G + E +P Sbjct: 143 GMVAGPVLGGLMGGFS---PHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNP 199 Query: 195 AEHHKFALPANPLVYLIGLMALLTMVSEGAVLDWAALYLRQELGADLAIAGLAYAAFSGV 254 ++A + L+ + ++ +V + W ++ D G++ AAF + Sbjct: 200 LASFRWARGMTVVAALMAVFFIMQLVGQVPAALWV-IFGEDRFHWDATTIGISLAAFGIL 258 Query: 255 MAIMR-FFGDGVRNRFGAVTTLRGSAVVAATG---MLVAGLSPSPWFAIAAFATCGFGIA 310 ++ + V R G L + TG + A + + A+ G G+ Sbjct: 259 HSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIGMP 318 Query: 311 NMVPII-FSAGGNQEGMSSGTGMSVVTTMGYSGILVA 346 + ++ ++G G+ ++ + G L+ Sbjct: 319 ALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLF 355
>ENTSNTHTASED#Enterobactin synthetase component D signature. Length = 234 Score = 23.5 bits (50), Expect = 0.042 Identities = 7/17 (41%), Positives = 10/17 (58%) Query: 11 LILVLVGAVPAWPHSRS 27 ++ LV A+ PH RS Sbjct: 207 SVITLVSAITRVPHDRS 223
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 507 bits (1306), Expect = e-165 Identities = 230/1056 (21%), Positives = 441/1056 (41%), Gaps = 71/1056 (6%) Query: 3 IVRLAINNARLTISVLVFLLIAGWVAYQSTPKEAEPDVPIPMMYVSLIYQGISPEDSERL 62 + I + + L++AG +A P P + P + VS Y G + + Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 63 LLRPMESKLKSLKGLKEMRSAAFQGG-GYVLVEFQPQTNLATALQDTRSKVQDGKADLPQ 121 + + +E + + L M S + G + + FQ T+ A ++K+Q LPQ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 122 AAEEPVVTEVNISEFPVLVVTL---SGELPERVLAA-AARELRDRIEEVPGVLEGSLQGS 177 ++ ++ S ++V + + ++ A ++D + + GV + L G+ Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 178 RDDLVEVVIDPMKLSSYGLQLDQLIGAVGASNSLVAAGNIEGSQGK------YAVKVPSL 231 + + + +D L+ Y L +I + N +AAG + G+ ++ + Sbjct: 181 QY-AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 232 IETPEDVAALPVVAGPN-AVVQAKDIATIRSTFADATTITRLNGKPAIAIEVKKRIGANL 290 + PE+ + + + +VV+ KD+A + + I R+NGKPA + +K GAN Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 291 IDTLTKVRAVSDAFVKTMPEGMHVTYTQDKSVFVNQLLGDLQNHVMIAVILVFIVILYAL 350 +DT ++A P+GM V Y D + FV + ++ + A++LVF+V+ L Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 351 -SGRASLLIGLAIPSSFLIGILLLAMMGYTINMIVLFSLILAVGMLVDDAIIVTEFAERR 409 + RA+L+ +A+P L +LA GY+IN + +F ++LA+G+LVDDAI+V E ER Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 410 M-SEGMPKQEAFALAAKRMAGPVIAATMTRIAAFSPLLFWPGIIGDFMKYMPITLIVTLS 468 M + +P +EA + ++ G ++ M A F P+ F+ G G + IT++ ++ Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 469 ASMLYALVFAPTLGAIFAK--APQHHEDGNR-DGW-----------YMAVVKQAVRFPIT 514 S+L AL+ P L A K + +HHE+ GW Y V + + Sbjct: 480 LSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539 Query: 515 VMVLTVMLLVGIFVGYSKYGAGVEFFPSVEPDYGLLYVHARGNLSLAEMDTATKIAENRL 574 +++ +++ G+ V + + F P + L + + + Sbjct: 540 YLLIYALIVAGMVVLFLR--LPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYY 597 Query: 575 LGW--PGLKSVYTRVGKSQGGGQDVPEDVVGVIQYEFIDWRERKSANQ----ILNDLRGV 628 L ++SV+T G S G G+ W ER +++ + Sbjct: 598 LKNEKANVESVFTVNGFSFSG----QAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKME 653 Query: 629 MAGIPGVDVEV----RVPEAGPPTGKPIQ-IRLSAIDPKGLDEKARAVAARIAKVPG-VI 682 + I V + E G TG + I + + L + + A+ P ++ Sbjct: 654 LGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLV 713 Query: 683 DISDGLPPPGVDWALEVDRAKAAQYGISPTSVGTVVQLVTNGLKLSEYRPAGADKAVDIR 742 + + LEVD+ KA G+S + + + G ++++ G + + Sbjct: 714 SVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRG--RVKKLY 771 Query: 743 LRLPEDRR-TLSTLDELRVQTSQG-SVPISNFVVRKAKPSVGILNRIDGARTVVVQANVT 800 ++ R +D+L V+++ G VP S F L R +G ++ +Q Sbjct: 772 VQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAA 831 Query: 801 AGTQVATVQQEVTQAVADMNLGSGIRWKLAGSNEDSAEASAFLSKAFGAAIFLIFLVLLA 860 GT + + + G G W E + A + ++FL L A Sbjct: 832 PGTSSGDAMALMENLASKLPAGIGYDWTGMSYQERLSGNQAPA--LVAISFVVVFLCLAA 889 Query: 861 QFNKFTSVWLVLSCVVMATIGVFLGLLITGETFGIVMSGIGVIALAGVVVNNNIVLID-T 919 + ++ V+ V + +GV L + + V +G++ G+ N I++++ Sbjct: 890 LYESWSIPVSVMLVVPLGIVGVLLAATLFNQKND-VYFMVGLLTTIGLSAKNAILIVEFA 948 Query: 920 YDRLREEGWDKMDAVLQTCRERARPVVLTAVSAILGVLPIAF--GLGLEIFHHETTINAP 977 D + +EG ++A L R R RP+++T+++ ILGVLP+A G G + Sbjct: 949 KDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQN-------- 1000 Query: 978 STQWWISLSSAIVFGLSFATVLTLVVTPSMLMVFTR 1013 ++ ++ G+ AT+L + P +V R Sbjct: 1001 ------AVGIGVMGGMVSATLLAIFFVPVFFVVIRR 1030
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 51.8 bits (124), Expect = 2e-09 Identities = 28/151 (18%), Positives = 60/151 (39%), Gaps = 21/151 (13%) Query: 142 QLDTARSNLTLAQSQLDTAQAELDRNEVKAPFDGVIDRVPVELGSSVMQGGEVATILKL- 200 +L N+ L +L + + ++AP + ++ V V+ E T++ + Sbjct: 303 KLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAE--TLMVIV 360 Query: 201 ---DPVIARGEISERDLGYLKIGDKAGVRLVS-GQT----VEGTVRYISRDASSATRT-- 250 D + + +D+G++ +G A +++ + T + G V+ I+ DA R Sbjct: 361 PEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGL 420 Query: 251 -FRVEVAIPNADGSVP-------AGMTAEIQ 273 F V ++I S +GM + Sbjct: 421 VFNVIISIEENCLSTGNKNIPLSSGMAVTAE 451 Score = 34.4 bits (79), Expect = 6e-04 Identities = 23/119 (19%), Positives = 47/119 (39%), Gaps = 14/119 (11%) Query: 66 LTEADKRAVLATRVAGVIDKLPVKQGDHVKTGDLVLML-----AAEEKISMVD--NAKQL 118 LT + + + ++ ++ VK+G+ V+ GD++L L A+ + A+ Sbjct: 90 LTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLE 149 Query: 119 VAQRQAELDA----SLRLMKTGNLPKLQLDTARSNLT---LAQSQLDTAQAELDRNEVK 170 + Q + L +K + P Q + L L + Q T Q + + E+ Sbjct: 150 QTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELN 208
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 61.6 bits (149), Expect = 6e-14 Identities = 34/194 (17%), Positives = 65/194 (33%), Gaps = 10/194 (5%) Query: 10 ADPKRVRILDGAMKVFLAYGFSRTTMDDIARAADMSRPALYLQFKNKTDIFRAIAMMVLS 69 A R ILD A+++F G S T++ +IA+AA ++R A+Y FK+K+D+F I + S Sbjct: 9 AQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSES 68 Query: 70 RSVAAAKMALAGDGAFTERMMRAIDEAFI-------SMMSAVVASPHGAELLDMKSSLGD 122 A ++R I + + H E + + + Sbjct: 69 NIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQ 128 Query: 123 LVGCWRGALVEHIAAAIHGEAARNGVDLAARGLSAQLLADMLLDGLEGMKARISDPEGQR 182 + I + + L + A ++ + G+ Sbjct: 129 AQRNLCLESYDRIEQTLKHCIEAKMLPA---DLMTRRAAIIMRGYISGLMENWLFAPQSF 185 Query: 183 QAAGALVKVIDLAL 196 + + L Sbjct: 186 DLKKEARDYVAILL 199
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 28.7 bits (64), Expect = 0.023 Identities = 33/215 (15%), Positives = 62/215 (28%), Gaps = 53/215 (24%) Query: 6 RIVLALAGLGLLPLTPAVAADYDPPIYADQAPDYVPVEVGSGWYLRGDVSYLAQKSFKND 65 + +A+A T A AA D Y GW D ++ ++ Sbjct: 3 KTAIAIAVALAGFATVAQAAPKDNTWYTG---------AKLGWSQYHDTGFINNNGPTHE 53 Query: 66 DFAFTPASFDEKEDPIFASIGFGYHFNDYLRADLNLGYLPGNKIGIGYDDSLSVVPPATS 125 + +F GY N Y+ ++ GYD + P Sbjct: 54 N-QLGAGAF------------GGYQVNPYVGFEM------------GYDWLGRM--PYKG 86 Query: 126 TVASADLKNYAYSLMLNAYVDLGTYVGITPYLGGGVGIVQSTRRLSANYFTNNGDPTDDF 185 +V + K L + + Y G + ++ D + Sbjct: 87 SVENGAYKAQGVQLTAKLGYPITD--DLDIYTRLGGMVWRA-------------DTKSNV 131 Query: 186 VQTDDKTKYSLAYTLNAGLAYQVSKNVSVDLGYQY 220 + T S + G+ Y ++ ++ L YQ+ Sbjct: 132 YGKNHDTGVSPVFA--GGVEYAITPEIATRLEYQW 164 Score = 28.0 bits (62), Expect = 0.035 Identities = 19/102 (18%), Positives = 32/102 (31%), Gaps = 26/102 (25%) Query: 154 TPYLGGGVGIVQSTRRLSANYFTNNGDPTDDFVQTDDKTKYSLAYTLNAGLAYQVSKNVS 213 T Y G +G Q + NNG ++ A YQV+ V Sbjct: 27 TWYTGAKLGWSQYH---DTGFINNNGPTHEN------------QLGAGAFGGYQVNPYVG 71 Query: 214 VDLGYQYF-----------SAPDAEYVTAASLTSFPVHKGIS 244 ++GY + A A+ V + +P+ + Sbjct: 72 FEMGYDWLGRMPYKGSVENGAYKAQGVQLTAKLGYPITDDLD 113
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 38.4 bits (89), Expect = 2e-05 Identities = 45/201 (22%), Positives = 72/201 (35%), Gaps = 35/201 (17%) Query: 81 GGKSFDYGKLKGGF------SLGGGV--GYKINDRLRADVTADYWFKSNFNGGTSDLVST 132 G + LG G GY++N + ++ D+ + + G + Sbjct: 35 GWSQYHDTGFINNNGPTHENQLGAGAFGGYQVNPYVGFEMGYDWLGRMPYKGSVENGAYK 94 Query: 133 STEVSKMSALLLLANAYVDIGTWHGITPYVGAGIGGARVKWDTVYDPNTAETNPGASNWR 192 + V L A I + Y +GG + DT + + G S Sbjct: 95 AQGVQ------LTAKLGYPITD--DLDIY--TRLGGMVWRADTKSNVYGKNHDTGVS--- 141 Query: 193 FAYALMAGASYCLTDKIILDAGYRFSHIQGGRMFEWDASSAGPGFDRGINTHEVRGGLRY 252 G Y +T +I Y++++ G DA + G D G+ + G+ Y Sbjct: 142 --PVFAGGVEYAITPEIATRLEYQWTNNIG------DAHTIGTRPDNGM----LSLGVSY 189 Query: 253 QFGGNNGCAAPVVAYQPEPEP 273 +FG G AAPVVA P P P Sbjct: 190 RFGQ--GEAAPVVAPAPAPAP 208
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 31.0 bits (70), Expect = 0.015 Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 18/82 (21%) Query: 193 VLLVGPPGTGKTLLARSV---AGEANVPFFT-----ISGSDFVEMFVGV------GASRV 238 +++ G GTGK L+AR++ N PF I G GA Sbjct: 163 LMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTR 222 Query: 239 RD-MFDQAKKNAPCIIFIDEID 259 F+QA+ +F+DEI Sbjct: 223 STGRFEQAEGGT---LFLDEIG 241
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 37.6 bits (87), Expect = 2e-05 Identities = 28/136 (20%), Positives = 52/136 (38%), Gaps = 15/136 (11%) Query: 242 STNDPEELYRNSYQFILSGDYGTAEQGFRDHISRFPRDAKAADAHYWLGESLLGQQ--KY 299 S++ E+LY ++ SG Y A + F+ D++ ++LG Q +Y Sbjct: 32 SSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSR-----FFLGLGACRQAMGQY 86 Query: 300 RDAAEVFLAASKDYPKAKKAP----DMLLKLGVSLVGLKQHDVA---CATFSEVGKRYPD 352 A + + K + P + LL+ G +A A +E K Sbjct: 87 DLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELIADKTEF-KELST 145 Query: 353 ISSALKERVKQEKALA 368 S++ E +K +K + Sbjct: 146 RVSSMLEAIKLKKEME 161
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 120 bits (302), Expect = 1e-35 Identities = 33/137 (24%), Positives = 60/137 (43%), Gaps = 11/137 (8%) Query: 40 NGAGAATPGSAQDFTVNIGDRIFFDTDSSSIRADAQTTLARQAQWLNQY--KQYAIVVEG 97 A Q + + F+ + ++++ + Q L + L+ K ++VV G Sbjct: 200 VAPAPAPAPEVQTKHFTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLG 259 Query: 98 HADERGTREYNLALGARRAAAARDFLVSKGVASSRLKTISYGKERPVA--VCDD------ 149 + D G+ YN L RRA + D+L+SKG+ + ++ G+ PV CD+ Sbjct: 260 YTDRIGSDAYNQGLSERRAQSVVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAA 319 Query: 150 -ISCWSQNRRAVTTLSG 165 I C + +RR + G Sbjct: 320 LIDCLAPDRRVEIEVKG 336
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 51.2 bits (122), Expect = 4e-09 Identities = 46/228 (20%), Positives = 77/228 (33%), Gaps = 19/228 (8%) Query: 94 EAKPKPVDMTSAPPPAPT----PKETPKTEDVPKPQEKP--KPIPATEVAPAPTPKEEVK 147 E + + VD T+ P P E++ + E P P PAT T E K Sbjct: 986 EKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSK 1045 Query: 148 PEPVKQTEPKPTPAKPAPTPPPQDKTAAIDPTPEVKPDAVAEAIAK-DPPAEETQLPSSA 206 ++++ + A Q++ A + VK + +A+ +ETQ Sbjct: 1046 ----QESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQ----- 1096 Query: 207 PAPEARPKPQPAQAESAKAPERKDAEKPVKEASSKPKSDDKQFNANEISALLDKQKPSGG 266 E + + E AK K E P + PK +Q + A ++ Sbjct: 1097 -TTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQ--EQSETVQPQAEPARENDPTV 1153 Query: 267 GAKRSTQQASLGGDKDQGQKLSKSEQGALESQLGGCWTLPVGLEGSEN 314 K Q + D +Q K + S ++ T +E EN Sbjct: 1154 NIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPEN 1201 Score = 46.6 bits (110), Expect = 1e-07 Identities = 41/240 (17%), Positives = 83/240 (34%), Gaps = 18/240 (7%) Query: 63 PAP-LPTQRPDIVPASQKVGENSVDTDKPITPEAKPKPVDMTSAPPPAPTPKETPKTEDV 121 PAP P++ + V + K +V+ ++ E + A K +T +V Sbjct: 1028 PAPATPSETTETVAENSKQESKTVEKNEQDATE--TTAQNREVAKEAKSNVKANTQTNEV 1085 Query: 122 PKPQEKPKPIPATEVAPAPTPKEEVKPEPVKQTEPKPTPAKPAPTPPPQDKTAAIDPTPE 181 + + K TE T ++E K + V+ + + P + P Q+++ + P E Sbjct: 1086 AQSGSETKETQTTETKETATVEKEEKAK-VETEKTQEVPKVTSQVSPKQEQSETVQPQAE 1144 Query: 182 VKPDAVAEAIAKDPPAEE-TQLPSSAPAPEARPKPQPAQAESA---------KAPERKDA 231 + K+P ++ T + PA E + ES + PE Sbjct: 1145 PARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTP 1204 Query: 232 EKPVKEASSKPKSDDKQFNANEISALLDKQKPSGGGAKRSTQQASLGGDKDQGQKLSKSE 291 +S+ + K + + ++ +P A S+ S D + + Sbjct: 1205 ATTQPTVNSESSNKPKNRHRRSVRSVPHNVEP----ATTSSNDRSTVALCDLTSTNTNAV 1260 Score = 36.2 bits (83), Expect = 3e-04 Identities = 26/191 (13%), Positives = 54/191 (28%), Gaps = 22/191 (11%) Query: 44 MEAIAQTLQGDKKAVMHEKPAPLPTQRPDIVPASQKVGENSVDTDK--PITPEAKPKPVD 101 ++A QT + + ++ T+ V +K + T + +T + PK Sbjct: 1076 VKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPK--- 1132 Query: 102 MTSAPPPAPTPKETPKTEDVPKPQEKPKPIPATEVAPAPTPKEEVKPEPVKQTEPKPTPA 161 P+ P E+ P T P + + +P + Sbjct: 1133 --QEQSETVQPQAEPARENDP-----------TVNIKEPQSQTNTTAD---TEQPAKETS 1176 Query: 162 KPAPTPPPQDKTAAIDPTPEVKPDAVAEAIAKDPPAEETQ-LPSSAPAPEARPKPQPAQA 220 P + T + P+ A + E+ P + R P + Sbjct: 1177 SNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEP 1236 Query: 221 ESAKAPERKDA 231 + + +R Sbjct: 1237 ATTSSNDRSTV 1247
>TYPE3OMGPROT#Type III secretion system outer membrane G protein family signature. Length = 607 Score = 27.9 bits (62), Expect = 0.049 Identities = 16/82 (19%), Positives = 26/82 (31%), Gaps = 9/82 (10%) Query: 124 MHSFAAPNLAARLRAHGKTFAGYVEARS-PRKHNPWESFADAKGFEKPLAQFPRDYAKLP 182 +HSF L L + Y A+ P+ A + L D+ Sbjct: 5 LHSFFKRVLTGTLLL----LSSYSWAQELDWLPIPYVYVAK----GESLRDLLTDFGANY 56 Query: 183 SVSFVIPNLENDMHDGTIEAAD 204 + V+ + ND G E + Sbjct: 57 DATVVVSDKINDKVSGQFEHDN 78
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 173 bits (439), Expect = 2e-48 Identities = 107/449 (23%), Positives = 183/449 (40%), Gaps = 92/449 (20%) Query: 1 MKLRNIAIIAHVDHGKTTLVDQLLKQSGSFRDNQRVAE--RAMDSNDLEKERGITILAKA 58 MK+ NI ++AHVD GKTTL + LL SG+ + V + D+ LE++RGITI Sbjct: 1 MKIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGI 60 Query: 59 TSVDWKDTRINIVDTPGHADFGGEVERILSMVDSAIVLVDAAEGPMPQTKFVVGKALKVG 118 TS W++T++NI+DTPGH DF EV R LS++D AI+L+ A +G QT+ + K+G Sbjct: 61 TSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMG 120 Query: 119 LKPIVVINKIDR-------------------------------------PDARHVEVVNE 141 + I INKID+ ++ + V E Sbjct: 121 IPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIE 180 Query: 142 VFDLFAALDATDEQLD-----------------FPILYGSGRDGWVSENPEGPKDQQLAP 184 D + + L+ FP+ +GS ++ + Sbjct: 181 GNDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNN-----------IGIDN 229 Query: 185 LFDLIIKHVPAPTVHPGPFRMIGTI--LEANPFLGRIITGRIESGTLKANQAVKVLHHDG 242 L ++I + T H G + G + +E + R+ R+ SG L +V++ Sbjct: 230 LIEVITNKFYSST-HRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEK-- 286 Query: 243 TQIETGRISKILAFRGLERQPIEEAQAGDIVAIAGLS---KGTVADTFCDLAVTEALHAQ 299 E +I+++ E I++A +G+IV + + DT + Sbjct: 287 ---EKIKITEMYTSINGELCKIDKAYSGEIVILQNEFLKLNSVLGDTKLLPQRERIENPL 343 Query: 300 PIDPPTVTMSFLVNDSPLAGTEGDKVTSRVIRDRLLREAEGNVALKIEESPDKDSFFVSG 359 P+ TV P + + + D LL ++ + L+ +S Sbjct: 344 PLLQTTV--------EPSKPQQREML-----LDALLEISDSDPLLRYYVDSATHEIILSF 390 Query: 360 RGELQLAVLIETMRRE-GFEIAVSRPRVV 387 G++Q+ V ++ + EI + P V+ Sbjct: 391 LGKVQMEVTCALLQEKYHVEIEIKEPTVI 419 Score = 37.9 bits (88), Expect = 1e-04 Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 3/101 (2%) Query: 384 PRVVMQ--KGENGELLEPVEEVVIDVDEEHAGVVVQKMSERKAEMVELRPSGGNRQRIVF 441 P V+ Q K ELLEP I +E+ + A +V+ + N + Sbjct: 521 PIVLEQVLKKAGTELLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSG 579 Query: 442 HAPTRGLIGYQSELLTDTRGTAVMNRLFHAYEPYKGELPGR 482 P R + Y+S+L T G +V Y GE + Sbjct: 580 EIPARCIQEYRSDLTFFTNGRSVCLTELKGYHVTTGEPVCQ 620
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 32.9 bits (75), Expect = 0.002 Identities = 30/151 (19%), Positives = 59/151 (39%), Gaps = 7/151 (4%) Query: 62 NSFGWRRDVISLAAGVGILLYGLTGPFAAALMERIGLRRTLIASLLVMSGSTALSLLMTK 121 S W L +G +YG L +++G++R L+ +++ + + + Sbjct: 49 ASTNWVNTAFMLTFSIGTAVYG-------KLSDQLGIKRLLLFGIIINCFGSVIGFVGHS 101 Query: 122 PWHLFITWGVFSGIGSGAVASVLGATIVNRWFKTNRGLVMGLMSASSATGLLVFLPLLAS 181 + L I G G+ A +++ + K NRG GL+ + A G V + Sbjct: 102 FFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGM 161 Query: 182 LAQSGGWKPVAVAVAVATACLLPLVWLLVPE 212 +A W + + + + L+ LL E Sbjct: 162 IAHYIHWSYLLLIPMITIITVPFLMKLLKKE 192
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 67.3 bits (164), Expect = 4e-16 Identities = 28/93 (30%), Positives = 46/93 (49%) Query: 24 KKILDVAYDLFYRRGIRAIGVDEIVKRAGVTKPSLYRSFPSKDELAASYLRQYDLEYWER 83 + ILDVA LF ++G+ + + EI K AGVT+ ++Y F K +L + + E Sbjct: 14 QHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGEL 73 Query: 84 FDEAVKAHPGDPRAQIKAFLTRIGKRTQVADYR 116 E PGDP + ++ L + + T + R Sbjct: 74 ELEYQAKFPGDPLSVLREILIHVLESTVTEERR 106
>cloacin#Cloacin signature. Length = 551 Score = 43.2 bits (101), Expect = 8e-07 Identities = 24/55 (43%), Positives = 27/55 (49%), Gaps = 3/55 (5%) Query: 239 GPSGSSGGSGWTTGSSGGGWSSGSSSSGWSSGSSSSGGGFSGGGGSSGGGGSSGS 293 GP+G G G S G GWSS ++ G SGS GG SG G G G S G Sbjct: 23 GPTGLGVGGG---ASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGG 74 Score = 42.8 bits (100), Expect = 1e-06 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 2/57 (3%) Query: 237 GKGPSGSSGGSGWTTGSS--GGGWSSGSSSSGWSSGSSSSGGGFSGGGGSSGGGGSS 291 G+S GSGW++ ++ GGG SG G S + G G SGGG +GG S+ Sbjct: 27 LGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSA 83 Score = 37.8 bits (87), Expect = 4e-05 Identities = 23/61 (37%), Positives = 27/61 (44%), Gaps = 8/61 (13%) Query: 241 SGSSGGSGWTTGSSGGGWSSG--SSSSGWSS------GSSSSGGGFSGGGGSSGGGGSSG 292 +G+ SG G G G S SGWSS G S SG + GG G GGG+ Sbjct: 11 TGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGN 70 Query: 293 S 293 S Sbjct: 71 S 71
>cloacin#Cloacin signature. Length = 551 Score = 34.3 bits (78), Expect = 5e-04 Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 6/47 (12%) Query: 233 PGRRSSSGGWSSGSS------GGGWSSGGGGFSGGGGSSGGGGSSGS 273 G S + W GS GG GGG GG SG GG+ + Sbjct: 37 SGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSA 83 Score = 32.0 bits (72), Expect = 0.002 Identities = 18/56 (32%), Positives = 21/56 (37%), Gaps = 16/56 (28%) Query: 234 GRRSSSGGWSSGSSGGGWSS----------------GGGGFSGGGGSSGGGGSSGS 273 G + G S G GWSS GG G GGG+ GG SG+ Sbjct: 22 GGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGT 77 Score = 30.1 bits (67), Expect = 0.010 Identities = 14/40 (35%), Positives = 17/40 (42%) Query: 234 GRRSSSGGWSSGSSGGGWSSGGGGFSGGGGSSGGGGSSGS 273 G S SG G SG G G G GG G+ G + + Sbjct: 47 GGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAA 86 Score = 28.9 bits (64), Expect = 0.022 Identities = 13/38 (34%), Positives = 15/38 (39%), Gaps = 2/38 (5%) Query: 239 SGGWSSGSSGGGWSSGGG--GFSGGGGSSGGGGSSGSW 274 SGG G + G S+ G G G G GG W Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGW 39
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 77.2 bits (190), Expect = 1e-18 Identities = 31/150 (20%), Positives = 61/150 (40%), Gaps = 8/150 (5%) Query: 2 RLLLVEDDQKTADYIVRGLTEAGHVCDLLRNGHDALFAATSGSYDVIVADRMIPGLDGLS 61 +L+ +DD + + L+ AG+ + N +G D++V D ++P + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 MVKAARAAGVRTPAIFLTSIGGIDDRVEGLEAGGDDYLVKPFAFSELLARI-NALGRRPA 120 ++ + A P + +++ ++ E G DYL KPF +EL+ I AL Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 121 AQEQKTVLRVADLEMDLI-----MRRVTRQ 145 + + M L+ M+ + R Sbjct: 125 --RPSKLEDDSQDGMPLVGRSAAMQEIYRV 152
>PF06580#Sensor histidine kinase Length = 349 Score = 45.2 bits (107), Expect = 3e-07 Identities = 27/102 (26%), Positives = 38/102 (37%), Gaps = 23/102 (22%) Query: 358 LVENALRH----CPPGTTIKLSVTRQAERVVASVADNGPGIPPDEREQVFQRLYRLDHSR 413 LVEN ++H P G I L T+ V V + G + +E Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKE------------- 309 Query: 414 STPGNGLGLSLVRA-IADLHG--ASIALDDCQPGLAVVVSFP 452 G GL VR + L+G A I L + Q + +V P Sbjct: 310 ---STGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLIP 348
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.9 bits (64), Expect = 0.020 Identities = 11/20 (55%), Positives = 14/20 (70%) Query: 46 LVGPSGSGKTTLLHILGGLD 65 L G G GK+TL++ L GLD Sbjct: 601 LEGTGGIGKSTLINTLVGLD 620
>LCRVANTIGEN#Low calcium response V antigen signature. Length = 326 Score = 32.3 bits (73), Expect = 0.007 Identities = 26/110 (23%), Positives = 40/110 (36%), Gaps = 13/110 (11%) Query: 543 RIDAELTNGSDVTVFGTTDRP---AGAHLAALASLPEAATAEPMQHRFAYVGADLQDLYG 599 I + N D ++G TD A A L +P+ + ++D G Sbjct: 185 NIHDKSINLMDKNLYGYTDEEIFKASAEYKILEKMPQTTIQVDGSEKKI---VSIKDFLG 241 Query: 600 IDPARIGRATGLSDAYFSGASAAGTLALLAAT------PDGVLVSEETVQ 643 + R G L ++Y S L+ A T P LVS++T Q Sbjct: 242 SENKRTGALGNLKNSY-SYNKDNNELSHFATTCSDKSRPLNDLVSQKTTQ 290
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 26.7 bits (59), Expect = 0.036 Identities = 12/41 (29%), Positives = 22/41 (53%) Query: 2 LSEAEQALLSLLRSNARASTAELARRLGVSRTTVQSRIERL 42 L+E E L+ + R + + A LG++R T++ +I L Sbjct: 433 LAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIREL 473
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 29.9 bits (67), Expect = 0.018 Identities = 19/72 (26%), Positives = 26/72 (36%) Query: 92 KAEAVAAEPPAKLPTPKPETAGPVAKASPKAGAPEAKPAPAVAKSTGQRSISGAPRPEGE 151 K V E P P PKP+ V + E++PA + R S Sbjct: 88 KEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATS 147 Query: 152 RPLASPAVRLRA 163 +P+ S A RA Sbjct: 148 KPVTSVASGPRA 159
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 60.8 bits (147), Expect = 2e-13 Identities = 29/189 (15%), Positives = 67/189 (35%), Gaps = 22/189 (11%) Query: 7 AKSSRRETSPELTRAVLVQAALKLFGRQGFDGTSTREIAAEAQANIGSIAYHFGGKEGLR 66 A+ +++E TR ++ AL+LF +QG TS EIA A G+I +HF K L Sbjct: 2 ARKTKQEAQE--TRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLF 59 Query: 67 AAVADYIVETVQAVAGRALAAGQAPGSGQAAPAGDPEAARAQLFAAIEGIVGFVVAQPHA 126 + + + + + A P + L + ++ V + Sbjct: 60 SEIWELSESNIGELE-------------LEYQAKFPGDPLSVLREILIHVLESTVTEERR 106 Query: 127 GEIVQFLLRELQHPTAA--LDRIYDGVFEPTHRRLCHLWE--QATGE---PAESERTRLT 179 +++ + + + + + + ++ R+ + + R + Sbjct: 107 RLLMEIIFHKCEFVGEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAII 166 Query: 180 VFTLIGQVV 188 + I ++ Sbjct: 167 MRGYISGLM 175
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 49.8 bits (119), Expect = 6e-09 Identities = 48/368 (13%), Positives = 105/368 (28%), Gaps = 92/368 (25%) Query: 28 VEGDYVLLAPIEVAQVETVAVKRGDRVMPGTTVVTLESADAKIAVAQAEASLAQAQAQLA 87 G + PIE + V+ + VK G+ V G ++ L + A+ + ++SL QA+ + Sbjct: 92 HSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQT 151 Query: 88 DLQVGKRPEE-----------------------------------------------IAA 100 Q+ R E + Sbjct: 152 RYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDK 211 Query: 101 LKAQVDMAKAQADDAKR-------KYDRAADLFKRGTGTQADYDTASATLETANAQVGQA 153 +A+ A+ + + + D + L + + A ++ Sbjct: 212 KRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVY 271 Query: 154 QANLAV---GGLPARPETI--------------KAADNQVKQAQAALQQAQWRLSKRTLA 196 ++ L L A+ E + + + L + + R + Sbjct: 272 KSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIR 331 Query: 197 APSPGRVNDV-IRNPGDTAGPTAPVISMLPDGAVKL-SVYIPEAAFSSVRIGSLLSVHCD 254 AP +V + + G ++ ++P+ + + + +G + + Sbjct: 332 APVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVE 391 Query: 255 GCGE----GVKARVSYVSPDPEFTPPVIYSLENRQKLVYLVEARPEGDAG-------PLQ 303 + +V ++ D + R LV+ V E + PL Sbjct: 392 AFPYTRYGYLVGKVKNINLDA--------IEDQRLGLVFNVIISIEENCLSTGNKNIPLS 443 Query: 304 PGQIVDVE 311 G V E Sbjct: 444 SGMAVTAE 451
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 44.2 bits (104), Expect = 3e-07 Identities = 46/172 (26%), Positives = 73/172 (42%), Gaps = 4/172 (2%) Query: 205 ALTRETERGTMENLLAMPSSPAEIMLGKVLPFLVVGAVQVAVVLVAAKLLFDIPFVGSLT 264 A R + T E +L +I+LG++ A+ A + V A L ++ SL Sbjct: 90 AFGRMEGQRTWEAMLYTQLRLGDIVLGEMAWAATKAALAGAGIGVVAAALGYTQWL-SLL 148 Query: 265 LLLSSVLVFVLSLVLLGYTISTMARSQMQAMQLTFFFFLPSLLLSGFMFPYRGMPGWAQA 324 L + + L+ LG ++ +A S + P L LSG +FP +P Q Sbjct: 149 YALPVIALTGLAFASLGMVVTALAPSYDYFIFYQTLVITPILFLSGAVFPVDQLPIVFQT 208 Query: 325 LGEIFPLTHFLRITRSVMLKGADFHAIATEVGWLAVF--VLVFAGTALLRFR 374 PL+H + + R +ML + VG L ++ + F TALLR R Sbjct: 209 AARFLPLSHSIDLIRPIMLGHPVVD-VCQHVGALCIYIVIPFFLSTALLRRR 259
>PF02370#M protein repeat Length = 168 Score = 32.8 bits (74), Expect = 8e-04 Identities = 30/130 (23%), Positives = 53/130 (40%), Gaps = 10/130 (7%) Query: 36 YRAYADGLAESFPQSAKVFEEMAE--EEDGHRDSLIELFRKRFGERIPLIRREHVRGYYE 93 Y +D E+ PQ + E + + +G IE K E R R +E Sbjct: 36 YLDSSDSKRENDPQYRALMGENQDLRKREGQYQDKIEELEKERKE---KQERPERREKFE 92 Query: 94 RKPDWLVRPLGIEHVRRQAEAMEQQAYRFYVEAAKRTSDASTRKLLDDLA---AAEQGHE 150 R+ + +++ + +E + + + K+ SDAS + L DL AA++ E Sbjct: 93 RQHQDKHYQEQQKKHQQEQQQLEAEKQK--LAKEKQISDASRQGLNRDLEASRAAKKELE 150 Query: 151 NSAQRLEQKH 160 Q+L +H Sbjct: 151 PKHQKLGTEH 160
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 320 bits (821), Expect = e-104 Identities = 167/597 (27%), Positives = 277/597 (46%), Gaps = 80/597 (13%) Query: 1 MENNRNFFITIALSVLILAVWQYFYVLPRSEAQREAARVEQQRVEEQKKAAEAANPGAGT 60 M++ RN + IAL + +WQ ++ + T Sbjct: 1 MDSQRNLLV-IALLFVSFMIWQ------------------AWEQDKNPQPQAQQTTQTTT 41 Query: 61 PAPAPGTIPNAPGGDTVTVAGRDQALAASKRVKIDTPSLEGSINLTGARLDDLKLKHYTE 120 A P K + + T L+ +IN G ++ L Y + Sbjct: 42 TAAGSAADQGVPASGQ------------GKLISVKTDVLDLTINTRGGDVEQALLPAYPK 89 Query: 121 TVDKNSPEIELLN--PQALPTGYFAEIGFVGNDKTGA-VPGAETVWNVDGNPTL----SP 173 ++ P +LL PQ + Y A+ G G D G ++NV+ + + Sbjct: 90 ELNSTQP-FQLLETSPQFI---YQAQSGLTGRDGPDNPANGPRPLYNVEKDAYVLAEGQN 145 Query: 174 STPVTLTYTNDKGLTFKRTFSVD-ANYMFTVSDTVQNSGSSAVSLFNYGRVTRYDK-PAV 231 V +TYT+ G TF +TF + +Y V+ VQN+G + + ++G++ + P Sbjct: 146 ELQVPMTYTDAAGNTFTKTFVLKRGDYAVNVNYNVQNAGEKPLEISSFGQLKQSITLPPH 205 Query: 232 ASTYVLHEGLIGFTGTE-GLQEHKYASIE----KDKQYQPGKATDGWLGITDKYWAVTLV 286 T + L F G + KY + D + + GW+ + +Y+A + Sbjct: 206 LDTGSSNFALHTFRGAAYSTPDEKYEKYKFDTIADNENLNISSKGGWVAMLQQYFATAWI 265 Query: 287 PTEKQPFQPRYAFF--EDGRHRYQSDFLTDAINVEAGQSATVETEVFAGAKEVAKINAYA 344 P F+ G + + + V+ GQ+ + + ++ G + K+ A A Sbjct: 266 PHN----DGTNNFYTANLGNGIAAIGYKSQPVLVQPGQTGAMNSTLWVGPEIQDKMAAVA 321 Query: 345 EDRHIKRFDLLIDWGWFHFITKPMFWLIDTLYKFLGNFGLAILATTVIVKALFFPLANKS 404 DL +D+GW FI++P+F L+ ++ F+GN+G +I+ T IV+ + +PL Sbjct: 322 PH-----LDLTVDYGWLWFISQPLFKLLKWIHSFVGNWGFSIIIITFIVRGIMYPLTKAQ 376 Query: 405 YASMANMKKVQPKMLEIREKYADDKMKQQQAMMELYKTEKINPLAGCWPVALQIPVFFSL 464 Y SMA M+ +QPK+ +RE+ DDK + Q MM LYK EK+NPL GC+P+ +Q+P+F +L Sbjct: 377 YTSMAKMRMLQPKIQAMRERLGDDKQRISQEMMALYKAEKVNPLGGCFPLLIQMPIFLAL 436 Query: 465 YKVLYITIEMRHAPFFGWIQDLAAPDPTSLFNLFGLIPVTLPHMLMIGVWPLIMGVTMFL 524 Y +L ++E+R APF WI DL+A DP + P++MGVTMF Sbjct: 437 YYMLMGSVELRQAPFALWIHDLSAQDPYYIL-------------------PILMGVTMFF 477 Query: 525 QMRMNPTP-PDPTQAAIFTWMPVIFTFMMAGFPAGLVIYWAWNNMLSILQQGVIMKR 580 +M+PT DP Q I T+MPVIFT FP+GLV+Y+ +N+++I+QQ +I + Sbjct: 478 IQKMSPTTVTDPMQQKIMTFMPVIFTVFFLWFPSGLVLYYIVSNLVTIIQQQLIYRG 534
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 77.4 bits (190), Expect = 2e-19 Identities = 36/165 (21%), Positives = 69/165 (41%), Gaps = 9/165 (5%) Query: 24 RPAAGQDPVKRSQIIDGARRVFIEKGFEAASMNDITREAGVSKGTIYVYFANKEELFEAL 83 R + R I+D A R+F ++G + S+ +I + AGV++G IY +F +K +LF + Sbjct: 3 RKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI 62 Query: 84 IEEERGTIFKNMYDMLDRADDLRQTLVKFGKVLSMKITSARVIQAQRTVIGASDRIPDM- 142 E I + + + L ++L + S + +R ++ + Sbjct: 63 WELSESNIGELELEYQAK--FPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFV 120 Query: 143 GARFYERGPKRG-----HDKVVKFLNAAIERGLLKID-DVDLAAY 181 G + +R +D++ + L IE +L D AA Sbjct: 121 GEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAI 165
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 98.0 bits (244), Expect = 2e-24 Identities = 44/289 (15%), Positives = 99/289 (34%), Gaps = 21/289 (7%) Query: 109 ENQQVKAGDPLLTIDDGDYKIAVAQAEAQIATLSKTLDRIDAQTKAAQASLQQAKAQKVA 168 ++V L+ ++ Q E + + A+ + + K++ Sbjct: 180 SEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDD 239 Query: 169 DQAAADNAARAQQRAAQLVKTHVGTQAQLDDAQTALDQANAALVGADAQIAAAQANI--G 226 + A A+ + +V +L ++ L+Q + ++ A + Sbjct: 240 FSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNE 299 Query: 227 VLEAQRAESASTLASLQLGRDKAARDLSFTVLKAPYDGIVGNRSV-EQGDLVSPGQKLAV 285 +L+ + ++ + L L K +V++AP V V +G +V+ + L V Sbjct: 300 ILD-KLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMV 358 Query: 286 VVPMDKLYVV-ANFKETQLARLVPGEKVNISVDAIDG---HPIQGTVSSLAPASGAVFSL 341 +VP D V A + + + G+ I V+A + G V ++ + Sbjct: 359 IVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDA------ 412 Query: 342 LPPENATGNFTKVVQRVPVRIDVPA--DALKTGKLRAGLSVVVNVDSRT 388 +V V + I+ K L +G++V + + Sbjct: 413 -----IEDQRLGLVFNVIISIEENCLSTGNKNIPLSSGMAVTAEIKTGM 456 Score = 69.5 bits (170), Expect = 4e-15 Identities = 28/151 (18%), Positives = 51/151 (33%), Gaps = 9/151 (5%) Query: 94 VSPKISGYVDQVKVSENQQVKAGDPLLTIDDGDYKIAVAQAEAQIATLSKTLDRIDAQTK 153 + P + V ++ V E + V+ GD LL + + + ++ + L L++ Q Sbjct: 99 IKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSL--LQARLEQTRYQIL 156 Query: 154 AAQASLQQAKAQKVADQAAADNAARAQ-QRAAQLVKTHVGTQAQLDDAQTALDQANAALV 212 + L + K+ D+ N + + R L+ + Q Q Q L Sbjct: 157 SRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLI------KEQFSTWQNQKYQKELNLD 210 Query: 213 GADAQIAAAQANIGVLEAQRAESASTLASLQ 243 A+ A I E S L Sbjct: 211 KKRAERLTVLARINRYENLSRVEKSRLDDFS 241
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 108 bits (272), Expect = 1e-27 Identities = 75/401 (18%), Positives = 147/401 (36%), Gaps = 19/401 (4%) Query: 37 FMAILDIQIVSASLAEIQAGLSASSDEIPWVQTAYLIAEVVMIPLSGFLSRMLSTRVLFT 96 F ++L+ +++ SL +I + WV TA+++ + + G LS L + L Sbjct: 24 FFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLL 83 Query: 97 IAAAGFTAASALAATA-TNIDQMIVYRAVQGFIGGGMIPSVFAAAFTIF-PPSKRAVVSP 154 S + + +I+ R +QG G P++ + P R Sbjct: 84 FGIIINCFGSVIGFVGHSFFSLLIMARFIQG-AGAAAFPALVMVVVARYIPKENRGKAFG 142 Query: 155 MIGLVATLAPTIGPTVGGYISHAFSWHWLFLVNVVPGILVATAAWSLIDFDKPNLKLFNK 214 +IG + + +GP +GG I+H W +L L+ ++ I V L+ K +++ Sbjct: 143 LIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPF----LMKLLKKEVRIKGH 198 Query: 215 FDWWGLAGMAAFLGCMEYVLEEGPNNDWLQDQGVFICAIVMTIGAVIFFWRVFTAEEPIV 274 FD G+ M+ + + IV + +IF + +P V Sbjct: 199 FDIKGIILMSVGIVFFMLFTT---SYSISF-------LIVSVLSFLIFVKHIRKVTDPFV 248 Query: 275 DLRAFSNVNFAFGSLFSFVIGIGLYGLTYLYPVFLGRIRGYDSMMIGEA-LFVSGLAMFV 333 D N+ F G L +I + G + P + + + IG +F +++ + Sbjct: 249 DPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVII 308 Query: 334 TAPISGFLSSKIDLRLMMMIGFFGFATGTWWMTHLTADWDFYELLIPQILRGCSMMLCMV 393 I G L + ++ IG + + + + + I + + Sbjct: 309 FGYIGGILVDRRGPLYVLNIGVTFLSVS-FLTASFLLETTSWFMTIIIVFVLGGLSFTKT 367 Query: 394 PINNIALGTLPPDRLKNASGLFNLTRNLGGAVGLALINTVL 434 I+ I +L L N T L G+A++ +L Sbjct: 368 VISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLL 408
>AUTOINDCRSYN#Autoinducer synthesis protein signature. Length = 216 Score = 34.1 bits (78), Expect = 3e-04 Identities = 25/119 (21%), Positives = 55/119 (46%), Gaps = 7/119 (5%) Query: 27 MMQLLEHVDYRLITGGEDLEAIYRLRYKSYL-RSGMCGPIAAGMFEDRWDNLPNSYRFGV 85 M+++ + V++ L++ + E ++ LR +++ R GM D++DN +Y FG+ Sbjct: 1 MLEIFD-VNHTLLSETKSGE-LFTLRKETFKDRLNWAVQCTDGMEFDQYDNNNTTYLFGI 58 Query: 86 YCYGELVSTIRFHYISREHPNSPSVDAYPEILIERLARGETFIDGTRFATDPDAAPAPG 144 ++ ++RF I ++PN + + E +++ +RF D A Sbjct: 59 K-DNTVICSLRF--IETKYPNMIT-GTFFPYFKEINIPEGNYLESSRFFVDKSRAKDIL 113
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 26.7 bits (58), Expect = 0.046 Identities = 13/39 (33%), Positives = 17/39 (43%) Query: 5 SLQKALDQLDQASAAVRLAVQNLANAPGGAEAAGDAAHA 43 SLQ ++ L A A++ A N A AEA A Sbjct: 199 SLQIRMNTLTAAKASIEAAAANKAREQAAAEAKRKAEEQ 237
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 30.2 bits (68), Expect = 0.022 Identities = 39/171 (22%), Positives = 65/171 (38%), Gaps = 20/171 (11%) Query: 55 SAGRFGLIVLGLAIGGGVGAVT------ARRIAMTSMPQLVAAFHSLVGLAAVMVAAAAI 108 S + + LAIG V R + +P A S+ + +V A + Sbjct: 389 SINTLTMFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMV 448 Query: 109 ----YAPESFGIGTAGDIHAQALIEMSLGVAIG---AITFTGSVIAFLKLDGRMSGKPIM 161 + P +F G+ G I+ Q I + +A+ A+ T ++ A L L + Sbjct: 449 LSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATL-LKPVSAEHHEN 507 Query: 162 LGG------RHFINAALGVALIVLIVLLVTTESKLVFWLIVAASLVLGVLL 206 GG F ++ V +L T L++ LIVA +VL + L Sbjct: 508 KGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRL 558
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 32.4 bits (74), Expect = 5e-04 Identities = 12/33 (36%), Positives = 17/33 (51%) Query: 218 KTYLAQLVAARTGLSEADAKARVDAMVAKVEDA 250 K L VA T L++ D+ A VDA+ + V Sbjct: 4 KQDLIAKVAEATELTKKDSAAAVDAVFSAVSSY 36
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 33.9 bits (77), Expect = 0.003 Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 4/98 (4%) Query: 476 IKMVQGDLPTSLEHYEAARDMLQDLTASVPDEKSWLGDLAMAN---DKIGNVLATQGDVG 532 +K Q DL SL E ++ S K+ + A AN D+I ++ + + Sbjct: 607 VKKAQKDLEKSLRKREHLEKEVEKKLESKSGNKNKMEAKAQANSQKDEIFALINKEANRD 666 Query: 533 AAAKAYQQSLS-IKRKLVDAQPNSASLLRDLTITYDEI 569 A A AY Q+L IKR+L D N L+D ++DE Sbjct: 667 ARAIAYAQNLKGIKRELSDKLENVNKNLKDFDKSFDEF 704
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 36.3 bits (84), Expect = 1e-04 Identities = 55/302 (18%), Positives = 103/302 (34%), Gaps = 78/302 (25%) Query: 27 VVVFGGSGFVGRHVVRALAKRGYRIR----------VACRRPDLAGHLQPLGNVGQIQPV 76 +V G +GF+G HV + L + G+++ V+ ++ L+ L G Q Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQ----ARLELLAQPG-FQFH 57 Query: 77 QANVRVRWSVDR--AVQGADHVVNLVAILHETG-------RQKFSAVHEFGSRAVAEAAR 127 + ++ R + A + V ++ + G + E R Sbjct: 58 KIDLADREGMTDLFASGHFERVFISPH---RLAVRYSLENPHAYADSNLTGFLNILEGCR 114 Query: 128 SVGAGLTHI------SALGADLD---SESD--------YARTKALGEKAV-----LETIP 165 + H+ S G + S D YA TK E L +P Sbjct: 115 H--NKIQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLP 172 Query: 166 DAVIFRPSINFG----PEDSFFNRFASMARYSPVLPLIGGGQTKFQPVYVGDVAEAVARS 221 A R +G P+ + F +M + + G+ K Y+ D+AEA+ R Sbjct: 173 -ATGLRFFTVYGPWGRPDMALFKFTKAMLEGKSI-DVYNYGKMKRDFTYIDDIAEAIIRL 230 Query: 222 VDGKIDR-----------------GQIYELGGP---NVLTFKECMEELLTVIERKRLLVP 261 D ++Y +G ++ + + +E+ L IE K+ ++P Sbjct: 231 QDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALG-IEAKKNMLP 289 Query: 262 VP 263 + Sbjct: 290 LQ 291
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 459 bits (1183), Expect = e-147 Identities = 227/1045 (21%), Positives = 436/1045 (41%), Gaps = 64/1045 (6%) Query: 6 LSDWALSHRSMVWYFMLVFVVAGIFSYLNLGREEDPNFTIKTMIIQANWPGASVKETLQQ 65 ++++ + W ++ ++AG + L L + P + + AN+PGA + Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 66 VTDRIEKKLEELDSLDFTRSVTT-AGQTVIFVNLKDTTRARDVVPNWLQVRNMVNDIKAQ 124 VT IE+ + +D+L + S + AG I + + T D +QV+N + Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGT---DPDIAQVQVQNKLQLATPL 117 Query: 125 FPQGVQGP-FFNDRFGDVYGNIYAFTSDG--LTPRQLRDYVED-ARTKILTVPNAGKVDL 180 PQ VQ ++ Y + F SD T + DYV + + + G V L Sbjct: 118 LPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQL 177 Query: 181 VGAQDEAIYLEFSTRQIAALGLNQQAIVASLQAQNAITPSGVIQSGPE------RISVRV 234 GAQ A+ + + L ++ L+ QN +G + P S+ Sbjct: 178 FGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIA 236 Query: 235 GGQFTSEDSLRAINLRVND--RFFRLSDVATITRGYADPPTALFRFNGQDAIALAIGMKP 292 +F + + + LRVN RL DVA + G + + R NG+ A L I + Sbjct: 237 QTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELG-GENYNVIARINGKPAAGLGIKLAT 295 Query: 293 NANLLQFGEALHKEMNKVLADLPVGVGVHLVADQPVIVEEAVSGFTRALFEAVAIVLAVS 352 AN L +A+ ++ ++ P G+ V D V+ ++ + LFEA+ +V V Sbjct: 296 GANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVM 355 Query: 353 FISLG-MRAGFVVALSIPLVLAITFTVMAYLGISLQRISLGALIIALGLLVDDAMIAVEM 411 ++ L MRA + +++P+VL TF ++A G S+ +++ +++A+GLLVDDA++ VE Sbjct: 356 YLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVEN 415 Query: 412 MVARLEVGDNLRKAATYVYTS-TAFPMLTGTLVTVAGFIPIGLNSSAAGEYTFTLFVVIA 470 + + K AT S ++ +V A FIP+ + G + I Sbjct: 416 VERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIV 475 Query: 471 VSLLVSWIVAVLFAPLLGVTILPATMKTKHHDQPG-----------RLTSLFRRVLVGSV 519 ++ +S +VA++ P L T+L + +HH+ G + + + + Sbjct: 476 SAMALSVLVALILTPALCATLL-KPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKIL 534 Query: 520 RHHWLTIIATVLLFAASIAGFGLVQQQFFPPSDRPELIVDWNLPQNSSIAETRDQMERFE 579 ++ L+ A + F + F P D+ + LP ++ T+ +++ Sbjct: 535 GSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVT 594 Query: 580 QRALVGNPDIDHFSSYIGQGAVRFVLAYDVQPANPYFGQTVIVTKSLEARNRVKPALEKL 639 L +V V + G + K E RN + + E + Sbjct: 595 DYYLKNEKANV--------ESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAV 646 Query: 640 LREEFVG----TDAFV------KLLELGPPVGRPVQ-YRVGGPDIQTVRELAQQFAGVIS 688 + + D FV ++ELG G + G + + Q G+ + Sbjct: 647 IHRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAA 706 Query: 689 AN-ARLAAPTFDWNEPQRVLRVDVLQDKARQLGITSSDIASALNSTVGGATITQVRDATY 747 + A L + + E +++V Q+KA+ LG++ SDI +++ +GG + D Sbjct: 707 QHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGR 766 Query: 748 LINVVARSRDAERGSIGTLQNLQLPTSTGEAIPLAAVANFRYELEQPTVWRRDRIPTITV 807 + + ++ R + L + ++ GE +P +A + P + R + +P++ + Sbjct: 767 VKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEI 826 Query: 808 RAGLVGDTLPATAVNELKPSVDAFIAKLPPRYSVETAGSVEESAKSQGPIAAVVPLMLFV 867 + T A+ ++ +KLP + G + S A+V + V Sbjct: 827 QGEAAPGTSSGDAMAL----MENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVV 882 Query: 868 MATILMIQLQSFQRLFLVVAVAPLGLIGVVAALVPSGAPLGFVAILGVLALIGILIRNSV 927 + L +S+ V+ V PLG++GV+ A ++G+L IG+ +N++ Sbjct: 883 VFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAI 942 Query: 928 ILIVQIEDL-VREGKDRWAAVIEATEHRMRPIALTAAAASLALIPIA------REVFWGP 980 +++ +DL +EGK A + A R+RPI +T+ A L ++P+A Sbjct: 943 LIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQN-A 1001 Query: 981 MAYAMMGGIIAGTAITLLFLPALYV 1005 + +MGG+++ T + + F+P +V Sbjct: 1002 VGIGVMGGMVSATLLAIFFVPVFFV 1026 Score = 83.7 bits (207), Expect = 2e-18 Identities = 80/526 (15%), Positives = 175/526 (33%), Gaps = 50/526 (9%) Query: 518 SVRHHWLTIIATVLLFAASIAGFGLVQQQFFPPSDRPELIVDWNLPQNSSIAETRDQMER 577 +R + ++L A + +P P + V N P + +D + + Sbjct: 5 FIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYP-GADAQTVQDTVTQ 63 Query: 578 FEQRALVGNPDIDHFSSY-IGQGAVRFVLAYDVQPANPYFGQTVIVTKSLEARNRVKPAL 636 ++ + G ++ + SS G+V L + +P Q + K A + + Sbjct: 64 VIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSG-TDPDIAQVQVQNKLQLATPLLPQEV 122 Query: 637 EKLLREEFVGTDAFVKLLELGPPVGRPVQYRVGGPDIQTVRELAQQFAGVISANARLAAP 696 ++ + +++ + Q + V++ + GV Sbjct: 123 QQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQL----- 177 Query: 697 TFDWNEPQRVLRVDVLQDKARQLGITSSDIASALNS--------TVGGATITQVRDATYL 748 Q +R+ + D + +T D+ + L +GG + Sbjct: 178 ----FGAQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNAS 233 Query: 749 INVVARSRDAERGSIGTLQNLQLPTST-GEAIPLAAVANFRYELE-QPTVWRRDRIPTIT 806 I R ++ E + L ++ G + L VA E + R + P Sbjct: 234 IIAQTRFKNPEE-----FGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAG 288 Query: 807 VRAGLVGDTLPATAVNELKPSVDAFIAKLPPRYSVETA--------GSVEESAKSQGPIA 858 + L +K + P V S+ E K+ Sbjct: 289 LGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAI 348 Query: 859 AVVPLMLFVMATILMIQLQSFQRLFLVVAVA-PLGLIGVVAALVPSGAPLGFVAILGVLA 917 +V L++++ LQ+ R L+ +A P+ L+G A L G + + + G++ Sbjct: 349 MLVFLVMYLF-------LQNM-RATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVL 400 Query: 918 LIGILIRNSVILIVQIEDLVREGK-DRWAAVIEATEHRMRPIALTAAAASLALIPIA--- 973 IG+L+ ++++++ +E ++ E K A ++ + A S IP+A Sbjct: 401 AIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFG 460 Query: 974 --REVFWGPMAYAMMGGIIAGTAITLLFLPALYVTWFRIKEPKQGR 1017 + + ++ + + L+ PAL T + + Sbjct: 461 GSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHE 506
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 38.3 bits (89), Expect = 4e-05 Identities = 20/140 (14%), Positives = 47/140 (33%), Gaps = 4/140 (2%) Query: 94 LAVQAARAELSNAEAQFANAAASEERQRQL--LASANATQAVFDAAQQARKAAEANVERA 151 L + E N + + E + TQ + + N+ Sbjct: 255 LEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLL 314 Query: 152 KASLAKSQEQLGYARLFSDFDGVVTAVGA-EVGQTVSAGQTVVTVARSDLR-EAVVDIPD 209 LAK++E+ + + + V + G V+ +T++ + D E + + Sbjct: 315 TLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQN 374 Query: 210 QLTGDLTTGTPFQVILQSLP 229 + G + G + +++ P Sbjct: 375 KDIGFINVGQNAIIKVEAFP 394 Score = 36.0 bits (83), Expect = 2e-04 Identities = 20/125 (16%), Positives = 39/125 (31%), Gaps = 19/125 (15%) Query: 72 VKVGDIVSKGTTIAALDPTALELAVQAARAELSNAEAQFANAAASEERQRQLLASA---N 128 VK G+ V KG + L A A+ ++ A + R + L S Sbjct: 112 VKEGESVRKGDVLLKLTALG-------AEADTLKTQSSLLQARLEQTRYQILSRSIELNK 164 Query: 129 ATQAVFDAAQQARKAAEANVERAKASLA---------KSQEQLGYARLFSDFDGVVTAVG 179 + + +E V R + + K Q++L + ++ V+ + Sbjct: 165 LPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARIN 224 Query: 180 AEVGQ 184 Sbjct: 225 RYENL 229
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 55.6 bits (134), Expect = 1e-10 Identities = 38/195 (19%), Positives = 72/195 (36%), Gaps = 10/195 (5%) Query: 58 RVGGRIAERLVDVGQHVDQGAVLARIDPQEQQSDLRSAQADLDAARAQLTQSAAAFERQK 117 + RL D + + A+ A+ EQ++ A +L ++QL Q + K Sbjct: 228 NLSRVEKSRLDDFSSLLHKQAI-AKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAK 286 Query: 118 TLLAQGFTTRRDYDAADQALKVAQGSVDAAQSAFANAQQNLSFTELKAGAPGVITARQVE 177 T + D+ L+ ++ A ++ + ++A + +V Sbjct: 287 EEYQL-VTQLFKNEILDK-LRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVH 344 Query: 178 T-GQVVQAAQTVFTVAEDGDR-DAVFNVQETLVARTPASPAVTITLLSDPQVRA---TGK 232 T G VV A+T+ + + D + VQ + I + + P R GK Sbjct: 345 TEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGK 404 Query: 233 VREISP--VVDQASG 245 V+ I+ + DQ G Sbjct: 405 VKNINLDAIEDQRLG 419 Score = 43.7 bits (103), Expect = 7e-07 Identities = 17/106 (16%), Positives = 35/106 (33%) Query: 59 VGGRIAERLVDVGQHVDQGAVLARIDPQEQQSDLRSAQADLDAARAQLTQSAAAFERQKT 118 + E +V G+ V +G VL ++ ++D Q+ L AR + T+ + Sbjct: 103 ENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIEL 162 Query: 119 LLAQGFTTRRDYDAADQALKVAQGSVDAAQSAFANAQQNLSFTELK 164 + + + + + F+ Q EL Sbjct: 163 NKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELN 208
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 33.3 bits (76), Expect = 2e-04 Identities = 16/93 (17%), Positives = 33/93 (35%), Gaps = 8/93 (8%) Query: 54 HADRLIARIIFLEGHPN--------LQSVAPLRIGQNVKEVLESDLAGEYDARTAYKRSR 105 D + R++ + G P S+ + E++++ + + K Sbjct: 60 TVDTIAERLLAIGGQPVATVKEYTEHASITDGGNETSASEMVQALVNDYKQISSESKFVI 119 Query: 106 EICHEVGDYVTMKLFEDLLADEEGHIDFLETQL 138 + E D T LF L+ + E + L + L Sbjct: 120 GLAEENQDNATADLFVGLIEEVEKQVWMLSSYL 152
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 41.3 bits (97), Expect = 7e-07 Identities = 41/167 (24%), Positives = 71/167 (42%), Gaps = 26/167 (15%) Query: 1 MAPMLEALIFVVFPFCMLFAAISDMLSMTIANRVSV---LLVVVFALVAPLTGMEWAAYG 57 +AP L ++ + ++ D+ M + +++++ ++F L+ + A G Sbjct: 128 LAPGWGTLAALLLTWVLVALTFIDLDKMLLPDQLTLPLLWGGLLFNLLGGFVSLGDAVIG 187 Query: 58 WHFAAGALVLAVTFGLFAM----GGMGGGDAKLLAATAVWMGLNIHLVEYLVVSTLIGGL 113 AG LVL + F + GMG GD KLLAA W+G L L++S+L+G Sbjct: 188 --AMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQA-LPIVLLLSSLVGAF 244 Query: 114 LTIAILLYRKSPLAVITGRNPFLRHFAEESVGIPYGIALGLGGLLTY 160 + I ++L R S IP+G L + G + Sbjct: 245 MGIGLILLRNHHQ----------------SKPIPFGPYLAIAGWIAL 275
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 116 bits (292), Expect = 6e-30 Identities = 65/283 (22%), Positives = 114/283 (40%), Gaps = 32/283 (11%) Query: 155 NPDQERRVSKIVNLLQIIGDDQVTLKVTVAEVSRSVMKQLGVNM------VGNGGSNGIS 208 PD + +++ L I QV ++ +AEV + LG+ + ++G+ Sbjct: 326 APDVMNDLERVIAQLDI-RRPQVLVEAIIAEVQDADGLNLGIQWANKNAGMTQFTNSGLP 384 Query: 209 YG---ALSDNFTGLGKQLSHSG----------FNIGNSALMAYINAMEQSGVMKTLAEPT 255 A ++ + G S + A+ S LA P+ Sbjct: 385 ISTAIAGANQYNKDGTVSSSLASALSSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPS 444 Query: 256 LTAVSGEKATFKVGGEYNLLTGVSQNVSSDNQTGLTTYTINKIEYGIGLEFQPVVLSPGR 315 + + +ATF VG E +LTG SQ S DN T+ + GI L+ +P + Sbjct: 445 IVTLDNMEATFNVGQEVPVLTG-SQTTSGDN----IFNTVERKTVGIKLKVKPQINEGDS 499 Query: 316 ISLKVRTSVSEPTTEGSVALSNGVTSPGANMLSLRKRLADTTVELPSGGSMMIAGLVRDD 375 + L++ VS + TS + R + V + SG ++++ GL+ Sbjct: 500 VLLEIEQEVSSVAD------AASSTSSDLG-ATFNTRTVNNAVLVGSGETVVVGGLLDKS 552 Query: 376 VRQAVNGLPGLTKIPVLGALFRSRDFVRNESELVIIITPYLAK 418 V + +P L IPV+GALFRS ++ L++ I P + + Sbjct: 553 VSDTADKVPLLGDIPVIGALFRSTSKKVSKRNLMLFIRPTVIR 595
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 31.9 bits (72), Expect = 0.005 Identities = 14/59 (23%), Positives = 20/59 (33%) Query: 20 PAPAPAVPPPAGSTDTAVLARPAAPMQPSAAVAPPARRAVEAPPIAPEARRPQREKSET 78 APA PP A + P +P A +E P P+ + +K E Sbjct: 55 VAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQ 113 Score = 29.9 bits (67), Expect = 0.020 Identities = 16/61 (26%), Positives = 20/61 (32%), Gaps = 7/61 (11%) Query: 22 PAPAVPPPAGSTDTAVLARPAAPMQPSAAVAPPARRAV-------EAPPIAPEARRPQRE 74 PAPA P A L P A P V P EAP + + + + Sbjct: 44 PAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKP 103 Query: 75 K 75 K Sbjct: 104 K 104
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 28.3 bits (63), Expect = 0.049 Identities = 31/150 (20%), Positives = 61/150 (40%), Gaps = 15/150 (10%) Query: 150 FVSFRRARRVKAF-LNEFPNALDIIVRAVKSGLPLNDAVRLIANESPEP-VKAEFRRIVD 207 +S RR R+ L L +V A +PL +A+ +A +S +P + + Sbjct: 56 GLSLRRKIRLSTSDLALLTRQLATLVAA---SMPLEEALDAVAKQSEKPHLSQLMAAVRS 112 Query: 208 SQQMGISIPDATLRMPETMPCTEASFFGIVIQI--QSQAGGNLSEALGNLSRVLRDRKKM 265 G S+ DA P SF + + + G+L L L+ R++M Sbjct: 113 KVMEGHSLADAMKCFP-------GSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQM 165 Query: 266 KAKV-QALSMEAKASAAIIGALPFIVAFLV 294 ++++ QA+ + I + +++ +V Sbjct: 166 RSRIQQAMIYPCVLTVVAIAVVSILLSVVV 195
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 32.2 bits (73), Expect = 0.001 Identities = 20/134 (14%), Positives = 48/134 (35%), Gaps = 7/134 (5%) Query: 73 PNDKRIATNFAAALQMDGDADQSLAVMRKLAIAYPKDRDVLAAYGKALAANSQFEAALDA 132 + + + L+ G +A++ +++ + L + + ++E A Sbjct: 6 TDTQEYQLAMESFLKGGGT----IAMLNEIS---SDTLEQLYSLAFNQYQSGKYEDAHKV 58 Query: 133 VRRAQTPEYPDWKLVSAEAAILDQLGQKDDARQLYRKALELKPNEPSVLSNLGMSYVLEG 192 + ++ D + A +GQ D A Y + EP + + +G Sbjct: 59 FQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKG 118 Query: 193 DLRTAETYMRSAAQ 206 +L AE+ + A + Sbjct: 119 ELAEAESGLFLAQE 132
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 71.4 bits (175), Expect = 1e-16 Identities = 33/160 (20%), Positives = 64/160 (40%), Gaps = 10/160 (6%) Query: 9 IADDHPLFRGALREALAGIGNVAAIHEAGDFESAKALVVANEDVDLVLLDLSMPGASGLS 68 +ADD R L +AL+ G + + + + A D DLV+ D+ MP + Sbjct: 8 VADDDAAIRTVLNQALSRAG--YDVRITSNAATLWRWI-AAGDGDLVVTDVVMPDENAFD 64 Query: 69 GLISLRGIHPAVPLIVVSAHDDPATIRRALDLGASGFISKSASMEEIRNAVQLVL----- 123 L ++ P +P++V+SA + T +A + GA ++ K + E+ + L Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 124 --AGDIAAPVGVDLGVERDPEISDLIKRLQALTPQQTRVL 161 + V R + ++ + L L ++ Sbjct: 125 RPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLM 164
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 107 bits (269), Expect = 3e-27 Identities = 86/394 (21%), Positives = 157/394 (39%), Gaps = 17/394 (4%) Query: 34 LPTLEQELHADFRQLQWVMNAYTIAVTTVLMAVGTIADRYGRKRVFLISIAAFGLTSLIC 93 LP + + + WV A+ + + G ++D+ G KR+ L I S+I Sbjct: 37 LPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIG 96 Query: 94 GLA-DDVSTLIVARFLQGLSGGAVLICQLAVLSHEFREGRERAVAWGWWGVIFGVGLGFG 152 + S LI+ARF+QG +G A + V+ + R A+G G I +G G G Sbjct: 97 FVGHSFFSLLIMARFIQG-AGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVG 155 Query: 153 PIIGGGIVAASSWEWVFLIHGPAAAVAFVLAWTGVHESKDPEAGKLDLAGIVTLSPSVFC 212 P IGG I W ++ LI P + V + + + G D+ GI+ +S + Sbjct: 156 PAIGGMIAHYIHWSYLLLI--PMITIITVPFLMKLLKKEVRIKGHFDIKGIILMSVGIVF 213 Query: 213 LVFYITQGPDLGFASPVALTILGVSIASFIAFLIAERISKRPMFDFSVFRIRPFSGAIVG 272 + F + +++ L VS+ SF+ F+ R P D + + PF ++ Sbjct: 214 FML---------FTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVDPGLGKNIPFMIGVLC 264 Query: 273 SAAMNLSYWPFMIYLPIWFHAGLGYDSISTG-LALLAYTLPTLVMPPLAERLSLRYQPGI 331 + + F+ +P + G + + T+ ++ + L R P Sbjct: 265 GGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIGGILVDRRGPLY 324 Query: 332 IIPAGLAVIGVGFILMKFGSAAARPDWLTMLPGCLIAGAGLGITNTPVTNTTTGSVSSDR 391 ++ G+ + V F+ F W + + G GL T T ++ + S+ Sbjct: 325 VLNIGVTFLSVSFLTASFLLETTS--WFMTIIIVFVLG-GLSFTKTVISTIVSSSLKQQE 381 Query: 392 AGMASGIDMSARMVSLAVNIAVMGFILAGGVLAH 425 AG + +S IA++G +L+ +L Sbjct: 382 AGAGMSLLNFTSFLSEGTGIAIVGGLLSIPLLDQ 415
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 79.9 bits (197), Expect = 3e-18 Identities = 85/387 (21%), Positives = 142/387 (36%), Gaps = 19/387 (4%) Query: 55 RPALLGLLLFFCAGFADGALMPFFP--LWASSEAGIPVGAIGLLFGCYAGGELLAAPLIG 112 RP ++ L G +MP P L + G+L YA + AP++G Sbjct: 5 RPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLG 64 Query: 113 GIADRIGRRPVLIVSSIGVGAGFLGLFFVHGVAITAIVLLATGMCESVLHPTILTAIADV 172 ++DR GRRPVL+VS G + + + + I + G+ + IAD+ Sbjct: 65 ALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATG-AVAGAYIADI 123 Query: 173 TPPSAHPRWFSLARVSSSAGQILGPACGALLALVSLRSAFLAGGTMLVLGGIVMLFALNE 232 T R F G + GP G L+ S + F A + L + F L E Sbjct: 124 TDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPE 183 Query: 233 TIGIGRAAGDDLPDGEDDEEEGLSALLPAFRDGRLAKLLLWV-VLFEVAGNWIEAVIPLY 291 + R E A R + L+ V + ++ G A+ ++ Sbjct: 184 SHKGER-------RPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIF 236 Query: 292 AQDAGTLTPSGVGALFAYAAALTVGLQMLVSRMVESRSALWLTVGAGL-ATIFAFALLA- 349 +D + +G A L Q +++ V +R + G+ A + LLA Sbjct: 237 GEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAF 296 Query: 350 ASPAMVALIGAVSLCSIAQMLVGPLVPTAVNALAPPARRASYMAASSVAVDLKDSLGPSI 409 A+ +A V L S + P + ++ R+ + + L +GP + Sbjct: 297 ATRGWMAFPIMVLLASGGIGM--PALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLL 354 Query: 410 GTALYALAPR----LPWIAGIPLVAIA 432 TA+YA + WIAG L + Sbjct: 355 FTAIYAASITTWNGWAWIAGAALYLLC 381
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 66.2 bits (161), Expect = 1e-15 Identities = 25/142 (17%), Positives = 55/142 (38%), Gaps = 5/142 (3%) Query: 14 QPKQARATDLVAAILQAAVQVLETEGAQRFTTTRVAEKAGVSVGSLYQYFPNKAALLFRL 73 + + A + IL A+++ +G + +A+ AGV+ G++Y +F +K+ L + Sbjct: 3 RKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI 62 Query: 74 QSDEWQQTTDLLCRILQEVEKPPLERLRILVHAFVRSECEEAAVRGALDDAAPLYRDAPE 133 +L + PL LR ++ + S E R + ++ Sbjct: 63 WELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLM---EIIFHKCEF 119 Query: 134 AQEA--RASAERTVEIFMRETL 153 E A+R + + + + Sbjct: 120 VGEMAVVQQAQRNLCLESYDRI 141
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 55.2 bits (133), Expect = 1e-09 Identities = 25/115 (21%), Positives = 45/115 (39%), Gaps = 4/115 (3%) Query: 1049 HVLCIDNDARILEGMRLLLEGWGCKVDTVSGSRDLENA-ALHRPDIVLADYHLDGETGLD 1107 +L D+DA I + L G V S + L A D+V+ D + E D Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 1108 IIARLRATHGDDLAAVLVTADRSNEVRAAAAGLDIAVINKPLKPAVLRSMMARVR 1162 ++ R++ DL ++++A N A + + KP L ++ + Sbjct: 65 LLPRIKK-ARPDLPVLVMSAQ--NTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116
>MECHCHANNEL#Bacterial mechano-sensitive ion channel signature. Length = 136 Score = 140 bits (354), Expect = 1e-45 Identities = 70/140 (50%), Positives = 93/140 (66%), Gaps = 10/140 (7%) Query: 18 MLKEFQEFISKGNVMDLAVGVIIGAAFGKIVTSLVDDVIMPIFGAIFGGLDFNNYYIGLS 77 ++KEF+EF +GNV+DLAVGVIIGAAFGKIV+SLV D+IMP G + GG+DF + + L Sbjct: 3 IIKEFREFAMRGNVVDLAVGVIIGAAFGKIVSSLVADIIMPPLGLLIGGIDFKQFAVTL- 61 Query: 78 SAVNATSLAEAKKQGAVFAYGSFITAVLNFLILAFIIFLMVKAVNNLRRRLEREKPAAPA 137 A+ V YG FI V +FLI+AF IF+ +K +N L R ++E+PAA Sbjct: 62 ------RDAQGDIPAVVMHYGVFIQNVFDFLIVAFAIFMAIKLINKLNR--KKEEPAAAP 113 Query: 138 APPPADVALLTEIRDLLAKR 157 A P + LLTEIRDLL ++ Sbjct: 114 A-PTKEEVLLTEIRDLLKEQ 132
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 165 bits (420), Expect = 1e-50 Identities = 80/332 (24%), Positives = 137/332 (41%), Gaps = 41/332 (12%) Query: 3 MTVLVTGGAGYIGSHMVWELLDAGERVVVLDRLSTGF---------EWAVAPEAKLVVGD 53 M LVTG AG+IG H+ LL+AG +VV +D L+ + E P + D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 54 VADKELVGSIIRDNHVDAIIHFAGSIVVPESVADPLAYYENNTSKTRTLIETAVREGVPH 113 +AD+E + + H + + + V S+ +P AY ++N + ++E + H Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 114 FIFSSTAAVYGGAGLEPVREDARLA-PESPYGLSKLMSEWMLRDAGLAHDIRYTALRYFN 172 +++S+++VYG P D + P S Y +K +E M + + T LR+F Sbjct: 121 LLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFFT 180 Query: 173 VAGADPKGRTGQSTPGATHLIKVACETALGKRPFMQVFGTDYPTPDGTCMRDYIHVSDLA 232 V G P GR + T + GK V+ G RD+ ++ D+A Sbjct: 181 VYG--PWGRPDMALFKFTKAML------EGKSI--DVYN------YGKMKRDFTYIDDIA 224 Query: 233 AAHRLALQRL---------RAGGTSL------VANCGYSHGYSVLEVIDSVRRAFGRDFE 277 A + G + V N G S +++ I ++ A G + + Sbjct: 225 EAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAK 284 Query: 278 VKMGDRRPGDAAAVVANSDLARAELGWTPQRD 309 M +PGD A++ +G+TP+ Sbjct: 285 KNMLPLQPGDVLETSADTKALYEVIGFTPETT 316
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 46.7 bits (111), Expect = 1e-07 Identities = 69/345 (20%), Positives = 129/345 (37%), Gaps = 46/345 (13%) Query: 5 QVAIDLGRIERNARTIVDRCALSGIKVFGVTKGMC---GMPQVARAMLRGGVAGIAESRF 61 Q ++DL +++N + R A + +V+ V K G+ ++ A+ + Sbjct: 6 QASLDLQALKQNLSIV--RQAATHARVWSVVKANAYGHGIERIWSAIGATDGFALL--NL 61 Query: 62 ENIRRLRDSGINAPIMLLRSPPMARIEEVVRTVDISLQSELATIREISRIAE-RMGRVHD 120 E LR+ G PI++L +++ L + + + ++ + R+ D Sbjct: 62 EEAITLRERGWKGPILMLEG--FFHAQDLEIYDQHRLTTCVHSNWQLKALQNARLKAPLD 119 Query: 121 IMLMIDLGDLREGIWPNDLIPTVEQILQFKGVRIAGIGTNLGCFGAIMPTPENLGQLVAH 180 I L ++ G R G P+ ++ +Q+ V + ++ E+ Sbjct: 120 IYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHF-------AEAEHPD----G 168 Query: 181 AYKTERLSGKSLDWISGG---ASSSLTLLLEGRLPAGINNLRVGEAILQG--GVETFRDV 235 ++ + + ++S+ TL A + +R G IL G +RD+ Sbjct: 169 ISGAMARIEQAAEGLECRRSLSNSAATLWHPE---AHFDWVRPG-IILYGASPSGQWRDI 224 Query: 236 PWAELEPDACRLTSDIIEVK-LKPSRPIGESG-YDAFGNQP--VFP-DEGDRL-RAIANI 289 L P L+S+II V+ LK +G G Y A Q + D R Sbjct: 225 ANTGLRP-VMTLSSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHAPT- 282 Query: 290 GREDVLVEG-LTPIAKGIRVLGASSDHLLLDVQDADPRPAVGDRV 333 VLV+G T + S D L +D+ P+ +G V Sbjct: 283 -GTPVLVDGVRTMTVGTV-----SMDMLAVDL-TPCPQAGIGTPV 320
>PF03309#Bvg accessory factor Length = 271 Score = 32.0 bits (73), Expect = 0.004 Identities = 24/127 (18%), Positives = 41/127 (32%), Gaps = 30/127 (23%) Query: 7 IAVIDIGKTNAKVALVDLATSSE--VALRRMANAPVRQAPYPHHDVESLWTFILDSLAGL 64 + ID+ T+ V L+ + V R+ P A D +L +D L G Sbjct: 2 LLAIDVRNTHTVVGLISGSGDHAKVVQQWRIRTEPEVTA-----DELALT---IDGLIGD 53 Query: 65 NCEQRIDAISITTHGATGALVDASGELVLPVLDYEFDGPNGLAADYDAIRPPFAETGTPR 124 + E R+ S + +P + +E + Y P P Sbjct: 54 DAE-RLTGASGLS--------------TVPSVLHEVR---VMLEQYWPNVPHVL--IEPG 93 Query: 125 LPLGLNL 131 + G+ L Sbjct: 94 VRTGIPL 100
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 27.8 bits (61), Expect = 0.042 Identities = 38/165 (23%), Positives = 60/165 (36%), Gaps = 27/165 (16%) Query: 25 VVLALPRGGIPV---AAEVAKALGAPLDVLVVRKVGAPGNAELAVAAVVDGNP-----PD 76 V A RG I V AA +A+A+ + VL AP + A++ + D Sbjct: 259 VATAAGRGLIQVAQGAASLAQAISDAIAVLGRVLASAPSVMAVGFASLTYSSRTAEQWQD 318 Query: 77 VVLNREIVEAYALDDAELA-------SLVALERPELE---RRRLAYKGSRRSLSVAGKTV 126 + A +D A+L + VA ++ R +G+ +LSV Sbjct: 319 QT-PDSVRYALGMDAAKLGLPPSVNLNAVAKASGTVDLPMRLTNEARGNTTTLSVVSTDG 377 Query: 127 ILVDDGA--------ATGTTMKVAIRALRHRAPREIIVAVPVSPP 163 + V AT +V + + AP I+ P SPP Sbjct: 378 VSVPKAVPVRMAAYNATTGLYEVTVPSTTAEAPPLILTWTPASPP 422
>cloacin#Cloacin signature. Length = 551 Score = 31.6 bits (71), Expect = 0.001 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 3/70 (4%) Query: 59 GGSAVTRRSGAGTISTFVALAAGMFAMGTWFFGGLALDHAEAAGFSSDVAEIHESLGGIT 118 G S +G + +A G A+ T GGLA+ + A S+ +A+I +L G Sbjct: 69 GNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSIS-AGALSAAIADIMAALKG-- 125 Query: 119 AFAFLIWGLV 128 F F +WG+ Sbjct: 126 PFKFGLWGVA 135
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 80.3 bits (198), Expect = 1e-19 Identities = 30/129 (23%), Positives = 56/129 (43%) Query: 2 KILLAEDEPRIAADVATVLKASGMAVDTVRDGEAAWFAGDVENYDAAILDLGLPKLDGLT 61 IL+A+D+ I + L +G V + W + D + D+ +P + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 ILKRWRANARRFPVLILTARGMWTERVDGINAGADDYLPKPFEMEELLARLRAILRRSTG 121 +L R + PVL+++A+ + + GA DYLPKPF++ EL+ + L Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 122 QAAPVLKSG 130 + + + Sbjct: 125 RPSKLEDDS 133
>PF06580#Sensor histidine kinase Length = 349 Score = 41.4 bits (97), Expect = 5e-06 Identities = 19/130 (14%), Positives = 42/130 (32%), Gaps = 28/130 (21%) Query: 325 GKQLSFNMDVAEDA-TAPIDEGDLSEILGNLVENAARYA------KSSVRVGASAAAGEV 377 +L F + + ++ LVEN ++ + + + G V Sbjct: 237 EDRLQFENQINPAIMDVQV----PPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTV 292 Query: 378 VITVTDDGPGIPDADREFALSRGVQLDSKGGSSGLGLAIVSD-IVEAYGG--RLAMANAD 434 + V + G L + S+G GL V + + YG ++ ++ Sbjct: 293 TLEVENTGSL--------------ALKNTKESTGTGLQNVRERLQMLYGTEAQIKLSEKQ 338 Query: 435 PGLVVTISLP 444 + + +P Sbjct: 339 GKVNAMVLIP 348
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 31.2 bits (70), Expect = 0.005 Identities = 30/162 (18%), Positives = 46/162 (28%), Gaps = 26/162 (16%) Query: 56 EALPADAAEAPTVQPKEPASAAA-----LPVLRTSPAPLDPRFRTRLPIARETTAGIAVP 110 E + E TV+ +E A +P + + +P + T P A Sbjct: 1094 ETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAE--------- 1144 Query: 111 AERPNDPVKQTVVPVAPQPSPAPPAQP-------VTPAVTD--PASSTPSFAVTPAIYIP 161 R NDP P + + A QP V VT+ ++ S P P Sbjct: 1145 PARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTP 1204 Query: 162 V---PQPRPAYPNAPVRVVRVGMKPAAHGYADGVYTGPTADA 200 P N P R ++ H + Sbjct: 1205 ATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRST 1246
>PF05043#Transcriptional activator Length = 493 Score = 32.2 bits (73), Expect = 0.004 Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 3/32 (9%) Query: 260 SIEQMTRELGISRSRLYRLFEASGGIVHYIQH 291 E + +E IS S LYR+ I I+ Sbjct: 102 QAESICKEFYISSSSLYRIISQ---INKVIKR 130
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 909 bits (2350), Expect = 0.0 Identities = 419/1033 (40%), Positives = 624/1033 (60%), Gaps = 12/1033 (1%) Query: 2 ISDLFITRTRLAIVLSIVISIAGAIAIFSLPVQQYPEITPPTVSVTAFYPGASAEVIADV 61 +++ FI R A VL+I++ +AGA+AI LPV QYP I PP VSV+A YPGA A+ + D Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 62 VGGPLETAINGVPNMMYMSSTSSNAGQYSLSVTFEVGTNPDIAQVNVQNRAQLAISQLPA 121 V +E +NG+ N+MYMSSTS +AG ++++TF+ GT+PDIAQV VQN+ QLA LP Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 122 AVTQQGVSVRSRSPDFVLGIAFYSPDSKLDVLQITNFTSTTIADALSRVSGVGEASVVGA 181 V QQG+SV S +++ F S + I+++ ++ + D LSR++GVG+ + G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG- 179 Query: 182 SEYSMRIWLNPARMDALGITADDVAAAIQRQNIQASLGQAGAPPAREGTELQYTLVARGR 241 ++Y+MRIWL+ ++ +T DV ++ QN Q + GQ G PA G +L +++A+ R Sbjct: 180 AQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 242 LLSTDEFGDIVIRTGEAGAIVRLHDIARIELGARSYSSSASFAGHDTAMLQINQAPGANA 301 + +EFG + +R G++VRL D+AR+ELG +Y+ A G A L I A GANA Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 302 IQTANAVRAELQRLSPTFPPGLQYQVVYDATRFVRTSLSLIVRILGEAFLIVLVVTYLFL 361 + TA A++A+L L P FP G++ YD T FV+ S+ +V+ L EA ++V +V YLFL Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 362 QDWRATLVSALAMPVAMLGAIAVLLAFGYSINSISLLALVLAIGLVADDAILVVENVKHV 421 Q+ RATL+ +A+PV +LG A+L AFGYSIN++++ +VLAIGL+ DDAI+VVENV+ V Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 422 MEDDPTVETVAAARKAMGQITGPIISTTLVLLAVVIPTAFLSGISGQLYRQFAVTLSAAL 481 M +D A K+M QI G ++ +VL AV IP AF G +G +YRQF++T+ +A+ Sbjct: 420 MMEDKL-PPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAM 478 Query: 482 VISSVVGLTLSPALAAILLRRGQRGY---RRGPLGWFARFMNATRVGYGRLVGFLVRLWI 538 +S +V L L+PAL A LL+ + + G GWF + + Y VG ++ Sbjct: 479 ALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTG 538 Query: 539 IPLAALAACFLGAYLLFSGLPSTFLPDEDQGALFVDIQLPNAASLDRTRAIVGEVQKTL- 597 L A G +LF LPS+FLP+EDQG IQLP A+ +RT+ ++ +V Sbjct: 539 RYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYL 598 Query: 598 -SATKGVENVISVAGFSIVQGTQSPNGAMVVAALDPWDQRNTPDLRLDAILARLRAQFST 656 + VE+V +V GFS Q+ N M +L PW++RN + +A++ R + + Sbjct: 599 KNEKANVESVFTVNGFSF--SGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGK 656 Query: 657 IPGANVAVFSPPAISGIGAVGGLDLRLQALQGQPPEEIAAVVRAFVTAINQAP-EIGGVA 715 I V F+ PAI +G G D L G + + + Q P + V Sbjct: 657 IRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVR 716 Query: 716 TTFSADVPQIYVDVDRTRAEALGVSVSDIYSTIGASFGSRYVNDFTLHGRVFQVNLQADA 775 D Q ++VD+ +A+ALGVS+SDI TI + G YVNDF GRV ++ +QADA Sbjct: 717 PNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADA 776 Query: 776 EHRGDAEDILNLHVRSRTGAMVPLRAVVSTSTVLAPFVISRYNLSVAAQINGQVAPGGSS 835 + R ED+ L+VRS G MVP A ++ V + RYN + +I G+ APG SS Sbjct: 777 KFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSS 836 Query: 836 GAAMDAIERVAAEALPAGYGYEWSGLSFQERRSAGQESVIFGLAFLFAYLFLVAQYESWM 895 G AM +E +A++ LPAG GY+W+G+S+QER S Q + ++F+ +L L A YESW Sbjct: 837 GDAMALMENLASK-LPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWS 895 Query: 896 LPIAVILSLGAALFGATGALVLFGLQNSLYVQIAIVLLIGLASKNAILIVEFAKERRE-E 954 +P++V+L + + G A LF +N +Y + ++ IGL++KNAILIVEFAK+ E E Sbjct: 896 IPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKE 955 Query: 955 GQSIAEAARLGAEQRFRAVMMTALSFILGIIPLAVSTGAGAGARQAVGVTIFGGMLAATT 1014 G+ + EA + R R ++MT+L+FILG++PLA+S GAG+GA+ AVG+ + GGM++AT Sbjct: 956 GKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATL 1015 Query: 1015 IGLFIIPALFAAI 1027 + +F +P F I Sbjct: 1016 LAIFFVPVFFVVI 1028 Score = 97.2 bits (242), Expect = 2e-22 Identities = 78/518 (15%), Positives = 178/518 (34%), Gaps = 40/518 (7%) Query: 6 FITRTRLAIVLSIVISIAGAIAIFSLPVQQYPEITPPTVSVTAFYP-GASAEVIADVVGG 64 + T +++ +I + LP PE P GA+ E V+ Sbjct: 533 ILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQ 592 Query: 65 PLETAIN----------GVPNMMYMSSTSSNAGQYSLSVTFEVGTNPDIAQVNVQNRAQL 114 + + V + + + +E + + V +RA++ Sbjct: 593 VTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKM 652 Query: 115 AISQLPAAVTQ-------QGVSVRSRSPDFVLGIAFYSPDSKLDVLQITNFTSTTIADAL 167 + ++ + + ++ A D+ + Q N A Sbjct: 653 ELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDA---LTQARNQLLGMAAQHP 709 Query: 168 SRVSGVGEASVVGASEYSMRIWLNPARMDALGITADDVAAAIQRQNIQASLGQAGAPPAR 227 + + V + +++ + + + + ALG++ D+ Q I +LG Sbjct: 710 ASLVSVRPNGLEDTAQFKLEV--DQEKAQALGVSLSDIN-----QTISTALGGTYVNDFI 762 Query: 228 EGTELQYTLVARG---RLLSTDEFGDIVIRTGEAGAIVRLHDIARIELGARSYSSSASFA 284 + L + + ++ + +R+ G +V + Sbjct: 763 DRGR-VKKLYVQADAKFRMLPEDVDKLYVRSAN-GEMVPFSAFTTSHWV-YGSPRLERYN 819 Query: 285 GHDTAMLQINQAPGANAIQTANAVRAELQRLSPTFPPGLQYQVVYDATRFVRTSLSLIVR 344 G + +Q APG ++ A ++ L+ P G+ Y + + + Sbjct: 820 GLPSMEIQGEAAPGTSSGD----AMALMENLASKLPAGIGYDWTGMSYQERLSGNQAPA- 874 Query: 345 ILGEAFLIVLVVTYLFLQDWRATLVSALAMPVAMLGAIAVLLAFGYSINSISLLALVLAI 404 ++ +F++V + + W + L +P+ ++G + F + ++ L+ I Sbjct: 875 LVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTI 934 Query: 405 GLVADDAILVVENVKHVMEDDPTVETVAAARKAMGQITGPIISTTLVLLAVVIPTAFLSG 464 GL A +AIL+VE K +ME + V A A+ PI+ T+L + V+P A +G Sbjct: 935 GLSAKNAILIVEFAKDLMEKE-GKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNG 993 Query: 465 ISGQLYRQFAVTLSAALVISSVVGLTLSPALAAILLRR 502 + + +V ++++ + P ++ R Sbjct: 994 AGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFVVIRRC 1031
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 43.7 bits (103), Expect = 9e-07 Identities = 19/111 (17%), Positives = 35/111 (31%), Gaps = 7/111 (6%) Query: 88 IRARVTGFLHSVDFKDGQAVKAGDTLFEIEPDQLNALVASARAQV-------ARADATRI 140 I+ + + K+G++V+ GD L ++ A ++ + R Sbjct: 99 IKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSR 158 Query: 141 SAERSLARNRDLLARRTVSQATVDEVQAAFDVASADVQVAQAALDTAELNL 191 S E + L + +EV + Q ELNL Sbjct: 159 SIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNL 209 Score = 34.4 bits (79), Expect = 8e-04 Identities = 20/137 (14%), Positives = 40/137 (29%), Gaps = 20/137 (14%) Query: 120 QLNALVASARAQVARADATRISAERSLARNRDLLARRTVSQATVDEVQAAFDVASADVQV 179 + + ++Q+ + ++ +SA+ L + + + Sbjct: 263 EAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIG---------L 313 Query: 180 AQAALDTAELNLSYAHITAPISGSI-GRATFTTGNLVGPDSGSLARIVSLDTVRVAFA-- 236 L E + I AP+S + T G +V +L IV D A Sbjct: 314 LTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAE-TLMVIVPEDDTLEVTALV 372 Query: 237 -------VTEGLLVTIR 246 + G I+ Sbjct: 373 QNKDIGFINVGQNAIIK 389
>ARGDEIMINASE#Bacterial arginine deiminase signature. Length = 409 Score = 459 bits (1183), Expect = e-163 Identities = 123/412 (29%), Positives = 213/412 (51%), Gaps = 12/412 (2%) Query: 3 TKFGVHSEVGQLRKVMVCAPGRAHQRLTPSNCDALLFDDVLWVDNAKRDHFDFMTKMRDR 62 + SE+G+L+KV++ PG + LTP LFDD+ +++ A+++H F + +++ Sbjct: 6 NPINIFSEIGRLKKVLLHRPGEELENLTPFIMKNFLFDDIPYLEVARQEHEVFASILKNN 65 Query: 63 GVEVVEMHNLLAETVAVP-EGKKWILDNQVVPNQIGL-GLVDEVRSYLEGLSNRDLAETL 120 VE+ + +L++E + + + ++ +I ++ ++ Y L+ ++ + Sbjct: 66 LVEIEYIEDLISEVLVSSVALENKFISQFILEAEIKTDFTINLLKDYFSSLTIDNMISKM 125 Query: 121 IGGLSTHEFPESIGGEQLELIRDAAGVNEYLLPPLPNTLYTRDTTCWIYGGVTQNPLYWP 180 I G+ T E L G N +++ P+PN L+TRD I GVT N ++ Sbjct: 126 ISGVVTEELKN----YTSSLDDLVNGANLFIIDPMPNVLFTRDPFASIGNGVTINKMFTK 181 Query: 181 ARHEETILTTSIYKFHPDFAGKVNVWWGDPTKDWGLATLEGGDVMPIGKGNVLIGMSERT 240 R ETI I+K+HP + V +W + A+LEGGD + + KG ++IG+SERT Sbjct: 182 VRQRETIFAEYIFKYHPVYKENVPIWLNRWEE----ASLEGGDELVLNKGLLVIGISERT 237 Query: 241 SRQAISQLAATLFE-KGAAERVIVAAMPKLRAAMHLDTVFTFADRDCVLLYPDIVNGIEA 299 +++ +LA +LF+ K + + ++ +PK R+ MHLDTVFT D + Sbjct: 238 EAKSVEKLAISLFKNKTSFDTILAFQIPKNRSYMHLDTVFTQIDYSVFTSFTSDDMYFSI 297 Query: 300 FSYRPDG-KGGVELHKDKGTFVETVRDALGLKKMRVVETGGNAYMRERTQWDSGANLVCA 358 + + + + K+K + + LG K + GG+ R QW+ GAN++ Sbjct: 298 YVLTYNPSSSKIHIKKEKARIKDVLSFYLGRKIDIIKCAGGDLIHGAREQWNDGANVLAI 357 Query: 359 SPGVVYAYDRNTYTNTLLRKEGIEVITIIGAELGRGRGGGHCMTCPIIRDAV 410 +PG + AY RN TN L + GI+V I +EL RGRGG CM+ P+IR+ + Sbjct: 358 APGEIIAYSRNHVTNKLFEENGIKVHRIPSSELSRGRGGPRCMSMPLIREDI 409
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 30.0 bits (67), Expect = 0.015 Identities = 9/33 (27%), Positives = 9/33 (27%) Query: 289 PPPVAPPPVEVAAAPVEQAPAPPPSEAPPAVAP 321 PP A P E P P P A Sbjct: 56 EPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVV 88
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 188 bits (479), Expect = 7e-58 Identities = 105/410 (25%), Positives = 183/410 (44%), Gaps = 13/410 (3%) Query: 1 MPAFAYRAYLADGSTEAGVLDASTKQDAARKLAQQGRRSYHLAPVNSERPQLR-LPGRSA 59 M + Y+A A G G +A + + A + L ++G L P++ + + S Sbjct: 1 MAQYHYQALDAQGKKCRGTQEADSARQARQLLRERG-----LVPLSVDENRGDQQKSGST 55 Query: 60 LTLTRR------VDLSRLFSELSVLLNAGFTVDRALGAVISGEANRQRRQQLQSVLDLTT 113 RR DL+ L +L+ L+ A ++ AL AV Q + +V Sbjct: 56 GLSLRRKIRLSTSDLALLTRQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVM 115 Query: 114 GGRPIAEAFAALPGITPDV-AALLASGERSGKMAFICQRLADTFEATAKRRAAIIEALAY 172 G +A+A PG + A++A+GE SG + + RLAD E + R+ I +A+ Y Sbjct: 116 EGHSLADAMKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIY 175 Query: 173 PAFLLLVMSGALVILATVLVPALEPIFEGSSAPKPFTMTMLSAFGTVFRDYPFVFPLAAV 232 P L +V + IL +V+VP + F P + +L R + LA + Sbjct: 176 PCVLTVVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLALL 235 Query: 233 LGLLCYLLLSRSAGARRRLSHWLLRIPLIGALVRDAVIARYLETLALLLGNGVAMTEALG 292 G + + ++ R R LL +PLIG + R ARY TL++L + V + +A+ Sbjct: 236 AGFMAFRVMLRQEKRRVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAMR 295 Query: 293 LAANVSRQSSLATSFASIEDNVANGARLHGAIVKAGIFDHATMSLVSLGEEANALPVVLD 352 ++ +V + D V G LH A+ + +F +++ GE + L +L+ Sbjct: 296 ISGDVMSNDYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMIASGERSGELDSMLE 355 Query: 353 RAAKMLQLTLTRRIDTVLKLLTPALTISLGFLVGSLVISVMTTILSINDL 402 RAA + ++ L L P L +S+ +V +V++++ IL +N L Sbjct: 356 RAADNQDREFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPILQLNTL 405
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 34.9 bits (80), Expect = 5e-05 Identities = 11/27 (40%), Positives = 21/27 (77%) Query: 16 GFTLVEMLVVLAIMALVAAIAAPGLVS 42 GFTL+E++VV+ I+ ++A++ P L+ Sbjct: 9 GFTLLEIMVVIVIIGVLASLVVPNLMG 35
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 117 bits (294), Expect = 1e-36 Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 4/133 (3%) Query: 21 RDDREGGFTLVELLVVLAIIALIATLAAPQVLRYLGAARTNAAKAQIRNIESALELYYVD 80 D++ GFTL+E++VV+ II ++A+L P ++ A A + I +E+AL++Y +D Sbjct: 3 ATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKLD 62 Query: 81 NAKYPTNEEGLNALVAQPA---GETRWNGPYLKGSTGLKDPWGRPYSYEVKADASGVVIR 137 N YPT +GL +LV P +N DPWG Y + + Sbjct: 63 NHHYPTTNQGLESLVEAPTLPPLAANYNKEGYIKRLP-ADPWGNDYVLVNPGEHGAYDLL 121 Query: 138 SLGKDGKPDGTGE 150 S G DG+ + Sbjct: 122 SAGPDGEMGTEDD 134
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 68.7 bits (168), Expect = 1e-16 Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 1/143 (0%) Query: 4 HPSLVLAATIALAVVLGAISIADFRRQIIPDGLNLALAGIGLSYQLAADADAMPQRLLFA 63 P A + L VL A++ D + ++PD L L L GL + L ++ ++ A Sbjct: 129 APGWGTLAALLLTWVLVALTFIDLDKMLLPDQLTLPLLWGGLLFNLLGGFVSLGDAVIGA 188 Query: 64 AATFAAAWLLRRGHFLMTGRIGLGLGDVKMLAAASCWISPLLLPVLLFIASASALLFVGG 123 A + W L L+TG+ G+G GD K+LAA W+ LP++L ++S G Sbjct: 189 MAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSLVGAFMGIG 248 Query: 124 QVVATGPAAARARVAFGPFIAIG 146 ++ + FGP++AI Sbjct: 249 LILLRN-HHQSKPIPFGPYLAIA 270
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 299 bits (768), Expect = 3e-94 Identities = 157/656 (23%), Positives = 284/656 (43%), Gaps = 75/656 (11%) Query: 85 TSDGSGKFELNLVNAPIADAAKAVLGDALHLNYIVDPRVQGTVTLQTSQPVSQDALVDIL 144 + +F + I + V + L+ I+DP V+GT+T+++ ++++ Sbjct: 23 RPAAAEEFSASFKGTDIQEFINTVSKN-LNKTVIIDPSVRGTITVRSYDMLNEEQYYQFF 81 Query: 145 QSALAVNA-AGITSRAGTYQIVPLSEIMASTPPVSVPSTSPSGPGVKVQVLQLQFIAADE 203 S L V A I G ++V + + PV+ + G V +V+ L +AA + Sbjct: 82 LSVLDVYGFAVINMNNGVLKVVRSKDAKTAAVPVASDAAPGIGDEVVTRVVPLTNVAARD 141 Query: 204 MKTILEPITRQ---GSVLRVDSTRNIITVAGSDSDLNAIREAVSVFDVDWMRGMSVALHP 260 + +L + GSV+ + + N++ + G + + + V VD SV P Sbjct: 142 LAPLLRQLNDNAGVGSVVHYEPS-NVLLMTGRAAVIKRLLTIV--ERVDNAGDRSVVTVP 198 Query: 261 LKTSKPEAVAAELDSIFGTKE---GPGAKLIQFIPNDRLNSVLVITSRPAYLARAATWIN 317 L + V + + PG+ + + ++R N+VLV P R I Sbjct: 199 LSWASAADVVKLVTELNKDTSKSALPGSMVANVVADERTNAVLVSGE-PNSRQRIIAMIK 257 Query: 318 KLDRLAETNESQLFVYQIQNRPAKELASVLSSVLGTTVKTEGQSGGSNVAPDQTPIAMQS 377 +LDR T + V ++ A +L VL+ + T + + A+ Sbjct: 258 QLDRQQAT-QGNTKVIYLKYAKASDLVEVLTGISSTMQSEKQAAKPV--------AALDK 308 Query: 378 DGVTPAPLTGPSPSLPQQDNQAPAHATVVADVENNALLIQTTARDYQRIEQILSKVDVLP 437 + + A + NAL++ +E++++++D+ Sbjct: 309 NI------------------------IIKAHGQTNALIVTAAPDVMNDLERVIAQLDIRR 344 Query: 438 TQVMLEAVIAEVTLNDDLKYGLRWFFENGGTK------VSVTDVAKAA------------ 479 QV++EA+IAEV D L G++W +N G + ++ A Sbjct: 345 PQVLVEAIIAEVQDADGLNLGIQWANKNAGMTQFTNSGLPISTAIAGANQYNKDGTVSSS 404 Query: 480 ---AAATLPGFNWSYATDNIQVTLNALSKITDVNVISAPTIMALNNQKAILQVGDQVPIL 536 A ++ G + N + L ALS T ++++ P+I+ L+N +A VG +VP+L Sbjct: 405 LASALSSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMEATFNVGQEVPVL 464 Query: 537 TQQSQDTGNGSAPIINSVQMKDTGVILTVTPRINNAGRVMLDIQQEVSNVTKTDSSDIDS 596 T +G+ N+V+ K G+ L V P+IN V+L+I+QEVS+V +S S Sbjct: 465 TGSQTTSGDNIF---NTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADA-ASSTSS 520 Query: 597 ---PTIQQRKVQTRVLVNDGESLALGGLIQQNNSVDRSQVPILGDIPILGNAFKQKDDTI 653 T R V VLV GE++ +GGL+ ++ S +VP+LGDIP++G F+ + Sbjct: 521 DLGATFNTRTVNNAVLVGSGETVVVGGLLDKSVSDTADKVPLLGDIPVIGALFRSTSKKV 580 Query: 654 RRTELIIFIRPHVVRDINEAREVTDEFRGKISLQTPIQKRRGG--TKLQQDLKRLA 707 + L++FIRP V+RD +E R+ + + Q+ + L QDL + Sbjct: 581 SKRNLMLFIRPTVIRDRDEYRQASSGQYTAFNDAQSKQRGKENNDAMLNQDLLEIY 636
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 29.4 bits (66), Expect = 0.041 Identities = 14/46 (30%), Positives = 27/46 (58%) Query: 155 VAIARALAHQPKVLILDEPTSSLSSAEADRLFALVERLREQGVAIL 200 VAIA+A H + +++ + + S E ++L A +E+ +E+ AI Sbjct: 14 VAIAKAFIHLEPNVDIEKTSITDVSTEIEKLTAALEKSKEELRAIK 59
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 83.9 bits (207), Expect = 4e-20 Identities = 68/255 (26%), Positives = 111/255 (43%), Gaps = 10/255 (3%) Query: 431 KPLTGQVVLITGGAGAIGAATAKLFADNGAHAVVVDLDGD---KAADTAKKAGNNSIGVA 487 K + G++ ITG A IG A A+ A GAH VD + + K + K ++ Sbjct: 4 KGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFP 63 Query: 488 ADITDPAQVRAAFDKAVAVFGGVDILVSNAGAAWEGRIGELDDALLRKSFELNFFAHQSV 547 AD+ D A + + G +DILV+ AG G I L D +F +N + Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 548 AQNAVRIMLEQGTGGVLLFNTSKQAVNPGPKFGAYGVPKAATLFLSRQYALDYGAHGIRS 607 +++ + M+++ +G ++ S A P AY KAA + ++ L+ + IR Sbjct: 124 SRSVSKYMMDRRSGSIVTVG-SNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRC 182 Query: 608 NAVNADRIRSGLLTDAMIASRSGARGV---SEKEYMSGNLLGQEVTAQDVAQA--FLHHA 662 N V+ + + ++ A +GA V S + + +G L + D+A A FL Sbjct: 183 NIVSPGSTETD-MQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSG 241 Query: 663 LAERTTADVTTVDGG 677 A T VDGG Sbjct: 242 QAGHITMHNLCVDGG 256
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 67.7 bits (165), Expect = 2e-16 Identities = 28/146 (19%), Positives = 56/146 (38%), Gaps = 14/146 (9%) Query: 3 RILDCAERLFRHYGYGKTNVADIARELGMSPANIYRFFASKVEIHQAVCGRMLGASYKMA 62 ILD A RLF G T++ +IA+ G++ IY F K ++ + ++ Sbjct: 15 HILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELE 74 Query: 63 YEIM-HLPIGAEERLRRYIHAQYKMTLETMLDEQKVHEMVIVAL-----ERDWGVIDKHV 116 E P LR + LE+ + E++ ++ + + V+ + Sbjct: 75 LEYQAKFPGDPLSVLREILIH----VLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQ 130 Query: 117 DSI----HDLFAEVIRDGIEAGEFAE 138 ++ +D + ++ IEA Sbjct: 131 RNLCLESYDRIEQTLKHCIEAKMLPA 156
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 43.3 bits (102), Expect = 1e-06 Identities = 28/171 (16%), Positives = 59/171 (34%), Gaps = 17/171 (9%) Query: 107 SAQAALDAAERQVETTELTRKRAEQLFTRNFAPKSQLEQATLAHDQAVATRDSARSSLDQ 166 ++ L+ E ++ + + + QLF L++ D L + Sbjct: 270 VYKSQLEQIESEILSAKEEYQLVTQLFKN-----EILDKLRQTTDNI----GLLTLELAK 320 Query: 167 AKNQVGYTDLKADRDGIVTAVNA-DVGQVVGSGTPVVSVAVDGEK-EVLIAVPEMEIAEF 224 + + + ++A V + G VV + ++ + + + EV V +I Sbjct: 321 NEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFI 380 Query: 225 KPGKSVK---AGFWSDSTLALDGKVREVAGSADPQSRT---FAVRVSLPND 269 G++ F L GKV+ + A R F V +S+ + Sbjct: 381 NVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVIISIEEN 431 Score = 42.1 bits (99), Expect = 2e-06 Identities = 18/127 (14%), Positives = 44/127 (34%), Gaps = 5/127 (3%) Query: 72 VNGKITERLVDIGQHVVPGDVLARIDPTDYDLSVKSAQAALDAAERQVETTELTRKRAEQ 131 N + E +V G+ V GDVL ++ + Q++L A + ++ + E Sbjct: 103 ENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIEL 162 Query: 132 LFTRNFAPKSQLEQATLAHDQAVATRDSARSSLDQAKNQ-----VGYTDLKADRDGIVTA 186 + ++ ++ + + +NQ + +A+R ++ Sbjct: 163 NKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLAR 222 Query: 187 VNADVGQ 193 +N Sbjct: 223 INRYENL 229
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 497 bits (1280), Expect = e-161 Identities = 236/1044 (22%), Positives = 433/1044 (41%), Gaps = 57/1044 (5%) Query: 13 LSRWAIGHPSIARFLFGLIIIAGALGLMRMGQKEDPDFTFRVMVVQAIWPGSSIQEMEDQ 72 ++ + I P A L ++++AGAL ++++ + P + V A +PG+ Q ++D Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 73 VVNKIERKLQETPHLDFVRSFT-RAGSAIITVQIKGDTNAAEVADAFYQVRKKVGDISGD 131 V IE+ + +L ++ S + AGS IT+ + T+ A QV+ K+ + Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTD---PDIAQVQVQNKLQLATPL 117 Query: 132 LPQGLLGPY-FNDEFGDTFITLHSISGDGFSY--PELKKFAI-QARDMLLTTPGVEKAVI 187 LPQ + ++ +++ + D ++ + +D L GV + Sbjct: 118 LPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQL 177 Query: 188 IGDQPEKLYIDVSSKALAERGLTLPDLQNAIKGQNNVDPAGAVDTGVN------SVRISV 241 G Q + I + + L + LT D+ N +K QN+ AG + + I Sbjct: 178 FGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIA 236 Query: 242 EGDVTKAADIRELRLRAG--GQVTRLGDIATVTSGLEDPFQRKYRFNGHDSVQLGVVMAK 299 + + ++ LR G V RL D+A V G E+ + R NG + LG+ +A Sbjct: 237 QTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN-YNVIARINGKPAAGLGIKLAT 295 Query: 300 GFKVTDVGKDVEATYKRFEEALPYGVSVDQISDQPGVVTDAVAEFMHALGEALLIVLVVS 359 G D K ++A + P G+ V D V ++ E + L EA+++V +V Sbjct: 296 GANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVM 355 Query: 360 FLSIG-WRSGLVIAIAIPLVLAATFAIMYELGIDLQRISLGALIIALGLLVDDAMIVVEM 418 +L + R+ L+ IA+P+VL TFAI+ G + +++ +++A+GLLVDDA++VVE Sbjct: 356 YLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVEN 415 Query: 419 MER-KLEEGLVKIEAASFAYTSTAFPMLSGTLITTAGFIPVGFAASTAGEYVRTLFYVVG 477 +ER +E+ L EA + + ++ ++ +A FIP+ F + G R + Sbjct: 416 VERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIV 475 Query: 478 IALIVSWFVAVYFTPWLGNMILKQRK-HAGTHHDVFDTRFYRRLRAT-------VGWAVR 529 A+ +S VA+ TP L +LK + F F + VG + Sbjct: 476 SAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILG 535 Query: 530 HRIIVLVMTLVTFGTSLWAFQFIPQNFFPQSSRPEILVDLWLPEGTSIKEVETQAKALEA 589 L++ + + F +P +F P+ + L + LP G + + + + Sbjct: 536 STGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTD 595 Query: 590 KMMDDKDKRFIATYIGEGAPRFFLPLDQQLRNPNFAQMLVM---ANDEPARERLIVKLRT 646 + K A F Q N V + E + Sbjct: 596 YYL----KNEKANVESVFTVNGFSFSGQ---AQNAGMAFVSLKPWEERNGDENSAEAVIH 648 Query: 647 VLAEDFPSIRAKVDRLFLGPP-------TGWPVQMRVM-GPDRQEVRRIADQVKAKFRED 698 + IR F P TG+ ++ G + + +Q+ + Sbjct: 649 RAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQH 708 Query: 699 PL-LGAVHDDWLEPVPAMKLVIDQDRARALGVTSQRIRQMLQATMAGAPLDDFRDGEETV 757 P L +V + LE KL +DQ++A+ALGV+ I Q + + G ++DF D Sbjct: 709 PASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVK 768 Query: 758 SIVAREPDASRSLLSSVDSVYVPTDFGGFVPLSQVAKVVPVLEQGIEWRRDRLPTISVRA 817 + + R L VD +YV + G VP S V R + LP++ ++ Sbjct: 769 KLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQG 828 Query: 818 TLPDGVQSNDVVTKMYKDMQGLRDGLAPGYKIEIQGGAEDSAESQASIAAKAPIMLAIIV 877 G S D + M+ L L G + G + S A I ++ Sbjct: 829 EAAPGTSSGDAMAL----MENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVF 884 Query: 878 VLLMIQLQNFGKAMLVLATGPLGIIGAAAALLISGAPFGFVAILGVIALLGIIMRNSIIL 937 + L +++ + V+ PLGI+G A + ++G++ +G+ +N+I++ Sbjct: 885 LCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILI 944 Query: 938 VDQIDQ-DIARGMERSEAIIGSAVRRFRPIVLTAMTAVLALIPISRAVFWG-----PLAY 991 V+ G EA + + R RPI++T++ +L ++P++ + G + Sbjct: 945 VEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGI 1004 Query: 992 AMMGGIVVATVLTILVLPAGYALF 1015 +MGG+V AT+L I +P + + Sbjct: 1005 GVMGGMVSATLLAIFFVPVFFVVI 1028
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 54.3 bits (130), Expect = 9e-11 Identities = 63/257 (24%), Positives = 102/257 (39%), Gaps = 17/257 (6%) Query: 8 MAGKRGLILGIANNRSIAYGIAKACVDHGAEI-ALTYQGEAFKKRVEPLAAELGAFVAGH 66 + GK I G A + I +A+ GA I A+ Y E +K V L AE A Sbjct: 6 IEGKIAFITGAA--QGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFP 63 Query: 67 CDVTDSASLDEVFANVAKHWGKLDFLVHAIAFSDKDELTGRYVETTRDNFLRTMDISVFS 126 DV DSA++DE+ A + + G +D LV+ G + + + T ++ Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLR----PGLIHSLSDEEWEATFSVNSTG 119 Query: 127 FTTIAKRAEALMT--EGGSLLTLTYYGAEKVMPHYNVMGVAKAALEASVRYLAVDLGGKK 184 ++ M GS++T+ A +KAA + L ++L Sbjct: 120 VFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYN 179 Query: 185 IRVNAISAGPIKT-----LAASGIGDFRYILKWNE---YNSPLKQTVTQEEVGDSGVYFL 236 IR N +S G +T L A G + I E PLK+ ++ D+ ++ + Sbjct: 180 IRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLV 239 Query: 237 SDLSRGVTGEVHHVDSG 253 S + +T VD G Sbjct: 240 SGQAGHITMHNLCVDGG 256
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.5 bits (63), Expect = 0.047 Identities = 10/49 (20%), Positives = 19/49 (38%) Query: 125 DYRGGGRSSARETAARVAAGALARKVVPGMVVRGALVSMGEKSIDRANW 173 DY+ + + G +AR + PG ++V G I ++ Sbjct: 564 DYKPRRLRYLQLVGKYILMGHVARVMEPGCKFDYSVVLEGTGGIGKSTL 612
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 34.0 bits (78), Expect = 0.001 Identities = 52/279 (18%), Positives = 95/279 (34%), Gaps = 19/279 (6%) Query: 50 GAVSATFALANAFLAPQISRLVDRLGQTRIVVPTTIISVLAFITLVSAANQDWPVWTLFV 109 G + A +AL AP + L DR G+ +++ + + + + + +A +W L++ Sbjct: 46 GILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPF----LWVLYI 101 Query: 110 SALLAAAMPSMPAMVRARWTELFRGQPEMNTAFAFESAADELVYIAGASLSVGLSAALFP 169 ++ A + V + E F F SA +AG L GL P Sbjct: 102 GRIV-AGITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLG-GLMGGFSP 159 Query: 170 EAGMLASTLF--LALGSTAFILQRSTEPQVRPVDHGSSGSAIRLRPVQIIT--------- 218 A A+ L + F+L S + + RP+ + R + +T Sbjct: 160 HAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVF 219 Query: 219 FALIFIGATFATTEVSTVAITKELGQPGAASLVIGVYALGSFVLGIIVGALNLKAPLQRQ 278 F + +G A V + L S +I G + + +R Sbjct: 220 FIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRA 279 Query: 279 LAIAVALVTLGTLLPLTASSVP--LLALTVFISGVAISP 315 L + + G +L A+ + + SG P Sbjct: 280 LMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIGMP 318
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 95.8 bits (238), Expect = 7e-27 Identities = 42/207 (20%), Positives = 69/207 (33%), Gaps = 11/207 (5%) Query: 1 MHRPRKEMIAETRAKLIAAARQAFGTIGYAEASMDDFTASAGLTRGALYHHFGDKKGLLE 60 M R K+ ETR ++ A + F G + S+ + +AG+TRGA+Y HF DK L Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60 Query: 61 AVIAEIDGEMAARVNEVASRAP-TRWQHFVDECTTYIEMALEPEIQR----IIFRDGPAV 115 + + + E ++ P + +E + E +R IIF V Sbjct: 61 EIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFV 120 Query: 116 LGDPAQWSNANACVGSMTDHLTAL----QREGVVVPGVDPETAARLINGA-SSQAAQRIA 170 D + ++ + AA ++ G S + Sbjct: 121 GEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLF 180 Query: 171 NSNDPEATSKIVVAAFKQLLEGLLRKP 197 + K LLE L P Sbjct: 181 APQSFDLK-KEARDYVAILLEMYLLCP 206
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 89.1 bits (221), Expect = 2e-21 Identities = 65/317 (20%), Positives = 107/317 (33%), Gaps = 61/317 (19%) Query: 306 RVLVTGGAGSIGRTLVKRSLELGAGAVLVADNSEFGIFQLSQYIDEK-DHDRL------- 357 + LVTG AG IG + KR LE G V+ DN L+ Y D RL Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQ-VVGIDN-------LNDYYDVSLKQARLELLAQPG 53 Query: 358 -KVRIVDVADRRQMTRVVTEFKPDIIFHAAALKHVPLLEENWESAIQTNVFGTLVCAEVA 416 + +D+ADR MT + + +F + V EN + +N+ G L E Sbjct: 54 FQFHKIDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGC 113 Query: 417 AKCGVPQFLLISS---------------DKAVDPTSVLGITKRAAEQLVSALHESHAIAP 461 + L SS D P S+ TK+A E + + Sbjct: 114 RHNKIQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLY---- 169 Query: 462 DGRRSGTKFIAVRFGNVFGSNGS---VATIFQAQIEAGGPVTI-TDRRMTRYFMTVAEAV 517 G +RF V+G G F + G + + +M R F + + Sbjct: 170 -----GLPATGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIA 224 Query: 518 DLVIMAAADAQSRNGKDD------------YAIYMLDMGKPVPILEVAETMIRMAGKTPY 565 + +I + + Y +Y + PV +++ + + G Sbjct: 225 EAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGI--- 281 Query: 566 ADIPIRFTGIRPGEKLH 582 + ++PG+ L Sbjct: 282 -EAKKNMLPLQPGDVLE 297
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 45.9 bits (109), Expect = 1e-07 Identities = 46/202 (22%), Positives = 63/202 (31%), Gaps = 35/202 (17%) Query: 1 MKVLVTGATGFIGRQVVHRLREAGAE------------LRLASRHPERLG-PGQDAMRMP 47 MK LVTGA GFIG V RL EAG + + L E L PG ++ Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 48 DVDAPTAAFLALARGVTDVVHCAGLNNDEGNATEADFRAA----------NAELSARLAQ 97 D L + V R + N + + Sbjct: 61 LADREGMTDLFASGHFERVFISPH---------RLAVRYSLENPHAYADSNLTGFLNILE 111 Query: 98 AAAEQASGRFIQLSSIRAVIGARVSATIDEDTIPD-PQCAYGRSKREAEIRVLDAYASHG 156 + SS +V G D D P Y +K+ E + Y+ Sbjct: 112 GCRHNKIQHLLYASS-SSVYGLNRKMPFSTDDSVDHPVSLYAATKKANE-LMAHTYSHLY 169 Query: 157 RSDATVLRLPPVYGTGMQGNLA 178 AT LR VYG + ++A Sbjct: 170 GLPATGLRFFTVYGPWGRPDMA 191
>PF05272#Virulence-associated E family protein Length = 892 Score = 33.1 bits (75), Expect = 0.002 Identities = 13/56 (23%), Positives = 19/56 (33%), Gaps = 9/56 (16%) Query: 38 LTLLGPSGSGKTTFLMILAGFVQPTEGKLFSDGTDITDRPAEQRAAGMVFQGYALF 93 + L G G GK+T + L G FSD T + + G + Sbjct: 599 VVLEGTGGIGKSTLINTLVG------LDFFSD-THFDI--GTGKDSYEQIAGIVAY 645
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 95.1 bits (236), Expect = 1e-25 Identities = 73/235 (31%), Positives = 107/235 (45%), Gaps = 24/235 (10%) Query: 9 GRTAIVTGGARGIGRAIAHKLSLSGADVWIWDIEPVELEGTRS-----------LSVDVT 57 G+ A +TG A+GIG A+A L+ GA + D P +LE S DV Sbjct: 8 GKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVR 67 Query: 58 KRDNVMQALT-IMGEVG-VDILVNNAGWLGGYKPFEEFEPAEWQRILQVNLLGTFEVTHR 115 + + I E+G +DILVN AG L EW+ VN G F + Sbjct: 68 DSAAIDEITARIEREMGPIDILVNVAGVLR-PGLIHSLSDEEWEATFSVNSTGVFNASRS 126 Query: 116 VLPLMRRAGKGRIVNMGSLAGKEGLPSLAAYSAASAGVIAFTKALSREVSDTDIRVNCIA 175 V M G IV +GS S+AAY+++ A + FTK L E+++ +IR N ++ Sbjct: 127 VSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVS 186 Query: 176 PGPIDTRLIRDL-----GNETVDAMISAS-----PLKRLGDPNEVAALVVWLCSD 220 PG +T + L G E V + PLK+L P+++A V++L S Sbjct: 187 PGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSG 241
>AEROLYSIN#Aerolysin signature. Length = 493 Score = 26.2 bits (57), Expect = 0.027 Identities = 10/27 (37%), Positives = 15/27 (55%) Query: 9 RTATLALCAAGLFASQATAMSVIAPDQ 35 + L+L +GL +QA A + PDQ Sbjct: 5 KLTGLSLIISGLLMAQAQAAEPVYPDQ 31
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 80.3 bits (198), Expect = 1e-19 Identities = 31/123 (25%), Positives = 58/123 (47%), Gaps = 1/123 (0%) Query: 2 RVLVVEDDKDLNRQIADALVDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPQIDGIS 61 +LV +DD + + AL AGY V + D VV D+ +P + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 VVERWRRGGRKMPVLILTARDRWSDKVSGIDAGADDYVTKPFHIEEVLARL-RALIRRAA 120 ++ R ++ +PVL+++A++ + + + GA DY+ KPF + E++ + RAL Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 121 GHA 123 + Sbjct: 125 RPS 127
>PF06580#Sensor histidine kinase Length = 349 Score = 30.6 bits (69), Expect = 0.013 Identities = 21/99 (21%), Positives = 36/99 (36%), Gaps = 20/99 (20%) Query: 377 LLENAMKWA----KSAVSVTVAPGKDDNLFEISIDDDGPGIPEDKARDALKRGRRLDETK 432 L+EN +K + + KD+ + +++ G L TK Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLA--------------LKNTK 308 Query: 433 PGTGLGLAIVAD-LVNEYGGILALE-RSGLGGLKAVVRL 469 TG GL V + L YG ++ G + A+V + Sbjct: 309 ESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLI 347
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 65.0 bits (158), Expect = 1e-13 Identities = 35/163 (21%), Positives = 58/163 (35%), Gaps = 25/163 (15%) Query: 132 PRPVAQGSGFFISEDGYLVTNNHVVEEG-------TAFTVV-----TNDGKELDAKLVGT 179 P SG + L+TN HVV+ AF +G ++ Sbjct: 98 PTGTFIASGVVVG-KDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKY 156 Query: 180 DPRTDLAVLKVEG-------GGKFTYVDFADDSKVRVGDWVVAVGNPFGLGGTVTAGIVS 232 DLA++K G +++++ +V + G P A + Sbjct: 157 SGEGDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYPGDKP---VATMWE 213 Query: 233 ARGRDIGAGPYDDFLQIDASVNRGNSGGPTFNLNGQVVGINTA 275 ++G+ +Q D S GNSG P FN +V+GI+ Sbjct: 214 SKGKITYLKGE--AMQYDLSTTGGNSGSPVFNEKNEVIGIHWG 254
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 91.0 bits (226), Expect = 3e-23 Identities = 31/125 (24%), Positives = 56/125 (44%) Query: 17 KILVIEDDREAADYLQKAFTEAGHTAHVAGDGETGFALADAGDYDVMVIDRMMPRRDGLS 76 ILV +DD L +A + AG+ + + T + AGD D++V D +MP + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 77 VIAGLRSRGNTTPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLNRRASA 136 ++ ++ PVL++SA + G DYL KP+ +EL+ + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 137 KEAET 141 + ++ Sbjct: 125 RPSKL 129
>PF06580#Sensor histidine kinase Length = 349 Score = 32.5 bits (74), Expect = 0.003 Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 18/82 (21%) Query: 382 IVDNAIKYSTDSTSKPA-VRVTLERTHGEIWLCVADNGQGIPDDADRARATERFVRLEKS 440 +V+N IK+ + + + + +G + L V + G L Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGS-----------------LALK 305 Query: 441 RSQPGSGLGLSLAKAVMTFHYG 462 ++ +G GL + + YG Sbjct: 306 NTKESTGTGLQNVRERLQMLYG 327
>PF06580#Sensor histidine kinase Length = 349 Score = 40.2 bits (94), Expect = 7e-06 Identities = 34/165 (20%), Positives = 53/165 (32%), Gaps = 34/165 (20%) Query: 192 FSLDQEQIDLGPLISETVRVVSLQAAQKA-----ITVETRIADALSLFADRRAIKQIVIN 246 +SL L E V S + E +I A+ D + +V Sbjct: 206 YSLRYSNARQVSLADELTVVDSYLQLASIQFEDRLQFENQINPAI---MDVQVPPMLVQT 262 Query: 247 LLSNAVKF----TGQGGHISVRARNTSGALVLTIEDNGCGIPKEALGKLGRPFEQVQNQF 302 L+ N +K QGG I ++ +G + L +E+ G K Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKN---------------- 306 Query: 303 SKNHAGSGLGLA-ISRSLAELQGG--ALKIRSTEGVGTIVSVRIP 344 +G GL + L L G +K+ +G V IP Sbjct: 307 --TKESTGTGLQNVRERLQMLYGTEAQIKLSEKQG-KVNAMVLIP 348
>TATBPROTEIN#Bacterial sec-independent translocation TatB protein signature. Length = 171 Score = 32.7 bits (74), Expect = 0.003 Identities = 17/117 (14%), Positives = 40/117 (34%), Gaps = 6/117 (5%) Query: 20 RQQSRIGLIERELGALRSLVLSGAVPPVAKPAEQMAADGKAEAAPVPAAAADIASPA--- 76 Q+ ++ + L + L+ P + +++ ++ A + AS Sbjct: 51 TQELKLQEFQDSLKKVEKASLTNLTPELKASMDELRQAAESMKRSYVANDPEKASDEAHT 110 Query: 77 VSEPVVQASATETEAPAGEAVSGPWSTSEAPKAAEPAEPVAGANPPGKPDIETALGT 133 + PVV+ + E A + + +P+ P P + +TA + Sbjct: 111 IHNPVVKDNEAAHEGVTPAAAQ---TQASSPEQKPETTPEPVVKPAADAEPKTAAPS 164
>OUTRMMBRANEA#Outer membrane protein A signature. Length = 346 Score = 27.6 bits (61), Expect = 0.041 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 3/28 (10%) Query: 7 RFALAACAAPGRRVE---SGSTRAISEP 31 R AL C AP RRVE G +++P Sbjct: 317 RAALIDCLAPDRRVEIEVKGIKDVVTQP 344
>INTIMIN#Intimin signature. Length = 939 Score = 30.0 bits (67), Expect = 0.010 Identities = 14/35 (40%), Positives = 20/35 (57%) Query: 169 ANGFQLVGGRLLPAGEAKAAMLLYEDDKGERISLF 203 ANGF + LP+ A A L+YE G+ ++LF Sbjct: 327 ANGFDIRFNGYLPSYPALGAKLMYEQYYGDNVALF 361
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 41.1 bits (96), Expect = 2e-06 Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 1/90 (1%) Query: 65 FIERETAETLVAEVDGRVAGYAIVLFRKGSGVARLYSIAVGPFFGALGIGRQLLTAAEEA 124 ++E E + ++ G I + +G A + IAV + G+G LL A E Sbjct: 59 YVEEEGKAAFLYYLENNCIGR-IKIRSNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEW 117 Query: 125 AFEHDRMMLRLEVREDNSRAIRIYEQAGYR 154 A E+ L LE ++ N A Y + + Sbjct: 118 AKENHFCGLMLETQDINISACHFYAKHHFI 147
>SALSPVBPROT#Salmonella virulence plasmid 65kDa B protein signature. Length = 591 Score = 26.6 bits (58), Expect = 0.007 Identities = 9/25 (36%), Positives = 14/25 (56%) Query: 46 AQGPGRGLVRFGWACRRMAVSRRIS 70 + G G G GW+C M+++R S Sbjct: 59 SSGGGNGPFGVGWSCATMSIARSTS 83
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 36.6 bits (84), Expect = 3e-04 Identities = 40/223 (17%), Positives = 72/223 (32%), Gaps = 35/223 (15%) Query: 205 VRDQIEEKNTVRSSLIEQRDAEIKDAVDQFERQRDSFVQRIKMARDSGDSDSAR---KLE 261 V D+ E N +L + A QRD + + ++ D + + + Sbjct: 928 VADKTGEPNHNELTLFDASKA-----------QRDHL--NVSLVGNTVDLGAWKYKLRNV 974 Query: 262 DEVAKLANPR-SKIGAKFDA-QIDPLD---QEIASLRSD------FDRLRASSP-PMTAD 309 + L NP K D I + ++ S+ S+ D P P T Sbjct: 975 NGRYDLYNPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPS 1034 Query: 310 QRQKLTG----RRSNLEQTRDADAAS---WQRRLDEAGKRLADAQGAEANKATVAAQNQV 362 + + + S + + DA R + + K A A ++ + Sbjct: 1035 ETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKE 1094 Query: 363 RQDQIAKELAALEKERIPMARTDQVRRIAARWYGAKPEQVTPE 405 Q KE A +EKE T++ + + P+Q E Sbjct: 1095 TQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSE 1137
>PF05272#Virulence-associated E family protein Length = 892 Score = 27.7 bits (61), Expect = 0.050 Identities = 10/32 (31%), Positives = 16/32 (50%) Query: 34 LAIIGPNGAGKTTLLRMLSGMLRPSAGEVKLG 65 + + G G GK+TL+ L G+ S +G Sbjct: 599 VVLEGTGGIGKSTLINTLVGLDFFSDTHFDIG 630
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 35.7 bits (82), Expect = 2e-04 Identities = 31/185 (16%), Positives = 61/185 (32%), Gaps = 22/185 (11%) Query: 16 TAFAFPVTVDSCGKPLTFDAPPKRAVIHDLNMAEMAFALKLQPSIVGLTGITGW--YKVG 73 TA A + P R V + E+ AL + P G+ + + Sbjct: 14 TAMALSPLLWQMNTAHAAAIDPNRIVALEWLPVELLLALGIVP--YGVADTINYRLWVSE 71 Query: 74 PEFKAEQGSIPELAPKY-PTLENLVAVEPDFFFAGWYYGMKPGGDVTPDTLAPHGIKTLV 132 P S+ ++ + P LE L ++P F YG P+ LA + Sbjct: 72 PPLPD---SVIDVGLRTEPNLELLTEMKPSFMVWSAGYGPS------PEMLAR-----IA 117 Query: 133 LTESCVHLDKNRPAASMDLLYGDVEKLGKIFGKEADAEKLVSGWKAQLADITTKVGDRKG 192 D +P A + ++ + ++ AE ++ ++ + + + R Sbjct: 118 PGRGFNFSDGKQPLAMAR---KSLTEMADLLNLQSAAETHLAQYEDFIRSMKPRFVKRGA 174 Query: 193 TRVFL 197 + L Sbjct: 175 RPLLL 179
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 107 bits (270), Expect = 4e-28 Identities = 56/330 (16%), Positives = 104/330 (31%), Gaps = 29/330 (8%) Query: 32 YIWVTGGRYQETENANLQQAKVSIASDTAGRIVQVAITDHQMVKQGDLLFTIDPEPYRIA 91 + E Q SI + + Q V + ++L + Sbjct: 137 LKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLT--SLIKEQ 194 Query: 92 LAQADAAVAAARLNVEQLRAAYSQSMAQEKSASSEVDYAQSQYDRAADLAQKG------- 144 + LN+++ RA +A+ + +S+ D + L K Sbjct: 195 FSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAV 254 Query: 145 INAKSSLDQARNDLDKAKQQVAVAQQGIISAKAALGGNP-DIETD---KHPTVMAALAA- 199 + ++ +A N+L K Q+ + I+SAK + + K + Sbjct: 255 LEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLL 314 Query: 200 ---RDKAAYDLARTTVKAPADGVISQASSFKVGQFVGSGTPLFSLVESDDT-WIDANFKE 255 K + ++AP + Q G V + L +V DDT + A + Sbjct: 315 TLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQN 374 Query: 256 TQLTNMKPGQKAEIVVDTYPGKTF---EATVKAIGAGTGAEFSLLPAQNATGNWVKVTQR 312 + + GQ A I V+ +P + VK I G V Sbjct: 375 KDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDA-------IEDQRLGLVFNVIIS 427 Query: 313 IPVRLELTDPDAKMALRTGMSASVTVDTGT 342 I L+ + + L +GM+ + + TG Sbjct: 428 IEEN-CLSTGNKNIPLSSGMAVTAEIKTGM 456 Score = 51.4 bits (123), Expect = 3e-09 Identities = 19/174 (10%), Positives = 55/174 (31%), Gaps = 4/174 (2%) Query: 10 KRRTGRFFLMLALPAALVIGGGYIWVTGGRYQETENANLQQA----KVSIASDTAGRIVQ 65 + R ++A + +I G+ + AN + I + + Sbjct: 50 ETPVSRRPRLVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKE 109 Query: 66 VAITDHQMVKQGDLLFTIDPEPYRIALAQADAAVAAARLNVEQLRAAYSQSMAQEKSASS 125 + + + + V++GD+L + + +++ ARL + + + Sbjct: 110 IIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELK 169 Query: 126 EVDYAQSQYDRAADLAQKGINAKSSLDQARNDLDKAKQQVAVAQQGIISAKAAL 179 D Q ++ + K +N + + + + ++ A + Sbjct: 170 LPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARI 223
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 145 bits (366), Expect = 3e-40 Identities = 91/406 (22%), Positives = 182/406 (44%), Gaps = 14/406 (3%) Query: 16 ITVALMLATVMQALDTTIANVALPTMTGDLGASPDNINWVLTSYIVAAAIMTPVTGWLAD 75 I + L + + L+ + NV+LP + D P + NWV T++++ +I T V G L+D Sbjct: 15 ILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSD 74 Query: 76 RFGRKELFLTAVVGFTIFSMLCGLAWSLETIVLF-RLMQGVFGAAIVPLSQTFLLDINPK 134 + G K L L ++ S++ + S ++++ R +QG AA L + PK Sbjct: 75 QLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPK 134 Query: 135 ERHGQAMAIWGAGIMLGPILGPTLGGWLTENFNWRWVFFINLPVGIVAFLGMAAYLPAVA 194 E G+A + G+ + +G +GP +GG + +W ++ I + + I+ + L Sbjct: 135 ENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPM-ITIITVPFLMKLLKKEV 193 Query: 195 RRVRSFDFFGFAMISLGVGALQLMLDRGGEVDWFSSVEIWIELGLAITGFWVFIIHTMTA 254 R FD G ++S+G+ L F++ L +++ F +F+ H Sbjct: 194 RIKGHFDIKGIILMSVGIVFFML----------FTTSYSISFLIVSVLSFLIFVKHIRKV 243 Query: 255 DHPFIDPKIFLDQNFVTGLAFIFVMGVLILASMSLLPPMLSTIFGYPTITIG-MVIGPRG 313 PF+DP + + F+ G+ ++ + +S++P M+ + T IG ++I P Sbjct: 244 TDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGT 303 Query: 314 IGTMISMLVVGRIMGKIDARILVVIGFLLTAHSLYTMASFTPQMDNWLIISSGVIQGLGM 373 + +I + G ++ + ++ IG + S T + F + +W + V G+ Sbjct: 304 MSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTAS-FLLETTSWFMTIIIVFVLGGL 362 Query: 374 GMVFVPLSTVAFATLDARYRTDATALFSLVRNLGSSIGVSVVTVLL 419 +ST+ ++L + +L + L G+++V LL Sbjct: 363 SFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLL 408