PredictBias
identification of genomic and pathogenicity islands in prokaryotic genome
Home
|
Help
|
Analyzed genomes
A) Input parameters
Genome
2097.gbk
Threshold dinucleotide bias
2
Threshold codon bias
4
Threshold %GC bias
3
E-value (RPSBlast)
0.05
Genome (non-pathogenic)
B) Compare a potential GI or PAI in related non-pathogenic sp. (
phylogenetic tree
)
Potential GI or PAI start
end
Select Organism
Prochlorococcus marinus str. NATL1A
Salmonella enterica subsp. enterica serovar Minnesota
Riemerella anatipestifer RA-CH-2
Bacillus anthracis str. Sterne
Streptococcus mitis B6
Pseudomonas aeruginosa PAO1
Bartonella tribocorum CIP 105476
Burkholderia pseudomallei 1710b
Burkholderia ambifaria AMMD
Escherichia coli UTI89
Pseudomonas aeruginosa DHS01
Rhizobium etli CFN 42
Haemophilus influenzae Rd KW20
Mycobacterium avium subsp. paratuberculosis K-10
Vibrio cholerae O1 biovar El Tor str. N16961
Streptococcus pyogenes M1 GAS
Staphylococcus aureus subsp. aureus Mu50
Burkholderia lata
Pseudomonas stutzeri RCH2
Mycobacterium avium 104
Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044
Helicobacter pylori 26695
Pseudomonas syringae pv. phaseolicola 1448A
Haemophilus influenzae PittGG
Burkholderia pseudomallei 1106a
Aeromonas hydrophila subsp. hydrophila ATCC 7966
Xanthomonas campestris
Mycobacterium ulcerans Agy99
Escherichia coli O157:H7 str. EDL933
Burkholderia cenocepacia MC0-3
Haemophilus influenzae 86-028NP
Bacillus weihenstephanensis KBAB4
Bacillus anthracis str. 'Ames Ancestor'
Bacillus anthracis str. Ames
Burkholderia vietnamiensis G4
Streptococcus pneumoniae R6
Xanthomonas campestris pv. campestris str. 8004
Bacillus cereus ATCC 14579
Burkholderia thailandensis E264
Staphylococcus aureus subsp. aureus MW2
Pseudomonas putida KT2440
Escherichia coli APEC O1
Pseudomonas aeruginosa UCBPP-PA14
Escherichia coli CFT073
Bacillus cereus ATCC 10987
Bacillus thuringiensis str. Al Hakam
Staphylococcus aureus subsp. aureus COL
Corynebacterium glutamicum R
Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188
Pseudomonas putida F1
Francisella tularensis subsp. tularensis SCHU S4
Thermotoga maritima MSB8 MSB8
Burkholderia pseudomallei 668
Staphylococcus aureus subsp. aureus NCTC 8325
Klebsiella pneumoniae subsp. pneumoniae HS11286
Pseudomonas putida W619
Clostridium botulinum A str. Hall
Bradyrhizobium sp. BTAi1
Enterococcus faecium Aus0085
Riemerella anatipestifer ATCC 11845
Acinetobacter baumannii AYE
Salmonella enterica subsp. enterica serovar Typhi str. CT18
Staphylococcus aureus subsp. aureus N315
Escherichia coli str. K-12 substr. MG1655
Acinetobacter baumannii ATCC 17978
Riemerella anatipestifer RA-CH-1
Prochlorococcus marinus str. MIT 9313
Brucella melitensis bv. 1 str. 16M
Streptococcus agalactiae NEM316
Escherichia coli 536
Pseudomonas syringae pv. syringae B728a
Escherichia coli E24377A
Corynebacterium diphtheriae NCTC 13129
Burkholderia multivorans ATCC 17616
Pseudomonas syringae pv. tomato str. DC3000
Clavibacter michiganensis subsp. michiganensis NCPPB 382
Mycobacterium tuberculosis H37Rv
Pseudomonas putida GB-1
Brucella ovis ATCC 25840
Rhodopseudomonas palustris BisB5
Burkholderia pseudomallei K96243
Ralstonia solanacearum GMI1000
Bradyrhizobium sp. ORS 278
Escherichia coli str. K-12 substr. DH10B
Burkholderia cenocepacia HI2424
Escherichia coli HS
Bordetella petrii DSM 12804
Escherichia coli SE15
Bacillus halodurans C-125 C-125
Acinetobacter baumannii SDF
Corynebacterium glutamicum ATCC 13032
Escherichia coli SMS-3-5
Brucella suis ATCC 23445
Rhodopseudomonas palustris HaA2
Mycobacterium marinum M
Escherichia coli O157:H7 str. Sakai
Riemerella anatipestifer
Prochlorococcus marinus str. NATL2A
Staphylococcus aureus subsp. aureus USA300_FPR3757
Burkholderia cenocepacia AU 1054
Burkholderia ambifaria MC40-6
Burkholderia mallei NCTC 10247
C) Potential GIs and PAIs in NC_007778 (
download
)