PredictBias
identification of genomic and pathogenicity islands in prokaryotic genome
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Analyzed genomes
A) Input parameters
Genome
KBase_derived_genome_PKUVDGCK.gbff
Threshold dinucleotide bias
2
Threshold codon bias
4
Threshold %GC bias
3
E-value (RPSBlast)
0.05
Genome (non-pathogenic)
B) Compare a potential GI or PAI in related non-pathogenic sp. (
phylogenetic tree
)
Potential GI or PAI start
end
Select Organism
Helicobacter pylori Cuz20
Prochlorococcus marinus str. NATL1A
Riemerella anatipestifer RA-CH-2
Shigella flexneri 1c
Streptococcus pyogenes MGAS315
Escherichia coli UTI89
Rhizobium etli CFN 42
Acinetobacter calcoaceticus
Listeria monocytogenes (unknown)
Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044
Escherichia coli O157:H7 str. EDL933
Helicobacter pylori Lithuania75 (Helicobacter pylori Lit75)
Gbbct species
Helicobacter pylori Aklavik86
Escherichia coli BL21
Burkholderia cenocepacia MC0-3
Mycoplasma agalactiae PG2
Helicobacter pylori 35A
Vibrio campbellii ATCC BAA-1116
Escherichia coli APEC O1
Erysipelothrix rhusiopathiae str. Fujisawa
Streptococcus pyogenes MGAS10270
Helicobacter pylori SJM180
Corynebacterium sp. KPL1824
Yersinia pseudotuberculosis IP 31758
Staphylococcus aureus subsp. aureus COL
Macrococcus caseolyticus JCSC5402
Wolbachia endosymbiont of Onchocerca ochengi
Vibrio parahaemolyticus RIMD 2210633
Staphylococcus aureus subsp. aureus JH1
Helicobacter pylori HUP-B14
Ralstonia solanacearum CMR15
Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC9150
Streptococcus pneumoniae CGSP14
Helicobacter pylori BM012S
Shewanella oneidensis MR-1
Acinetobacter baumannii AYE
Pseudovibrio species
Weizmannia coagulans
Yersinia pestis KIM10+
Borreliella burgdorferi JD1
Escherichia coli str. K-12 substr. MG1655
Helicobacter pylori 52
Shigella flexneri 5 str. 8401
Helicobacter pylori PeCan4
Carnobacterium maltaromaticum LMA28
Pseudomonas syringae pv. syringae B728a
Escherichia coli E24377A
Burkholderia multivorans ATCC 17616
Mycolicibacterium aurum
Clavibacter michiganensis subsp. michiganensis NCPPB 382
Helicobacter pylori Aklavik117
Staphylococcus aureus subsp. aureus ST228
Salinicoccus halodurans
Brucella ovis ATCC 25840
Rhodopseudomonas palustris BisB5
Helicobacter pylori Gambia94/24 (Helicobacter pylori Gam94/24)
Escherichia coli HS
Shewanella sp. Pdp11
Pseudomonas aeruginosa LESB58
Neisseria meningitidis MC58
Streptomyces atratus
Escherichia coli SMS-3-5
Streptococcus pyogenes MGAS5005
Rhodopseudomonas palustris HaA2
C. striatum 215
Streptococcus pyogenes SSI-1
Mycoplasma genitalium G37
Shewanella pealeana ATCC 700345
Burkholderia cenocepacia AU 1054
Streptococcus agalactiae A909
Pseudomonas aeruginosa PAO1
Streptococcus mitis B6
Mycoplasma arthritidis 158L3-1
Mycoplasma genitalium M2321
Bartonella tribocorum CIP 105476
Burkholderia ambifaria AMMD
Haemophilus influenzae Rd KW20
Pseudomonas aeruginosa PAK
Xanthomonas oryzae pv. oryzicola
Mycobacterium avium subsp. paratuberculosis K-10
Escherichia coli
Helicobacter pylori SNT49
Haemophilus influenzae PittGG
Pseudomonas putida
Borreliella burgdorferi B31
Vibrio vulnificus CMCP6
Shewanella sp. MR-7
Bacillus weihenstephanensis KBAB4
Haemophilus influenzae 86-028NP
Bacillus anthracis str. 'Ames Ancestor'
Helicobacter pylori UM066
Burkholderia vietnamiensis G4
Xanthomonas campestris pv. campestris str. 8004
Bacillus cereus ATCC 14579
Streptococcus equi subsp. equi 4047
Burkholderia thailandensis E264
Xanthomonas phaseoli pv. dieffenbachiae LMG 695
Helicobacter pylori 2017
Helicobacter pylori HPAG1
Escherichia coli CFT073
Streptococcus agalactiae 2603V/R
Helicobacter pylori Rif2
Helicobacter pylori Shi417
Francisella tularensis subsp. tularensis SCHU S4
Staphylococcus aureus subsp. aureus NCTC 8325
Klebsiella pneumoniae subsp. pneumoniae HS11286
Riemerella anatipestifer ATCC 11845
Helicobacter pylori 83
Helicobacter pylori PeCan18
Xanthomonas oryzae pv. oryzae
Proteus mirabilis HI4320
Acinetobacter baumannii ATCC 17978
Xanthomonas citri subsp. citri Aw12879
Staphylococcus aureus
Prochlorococcus marinus str. MIT 9313
Streptococcus agalactiae NEM316
Brucella melitensis bv. 1 str. 16M
Streptococcus thermophilus ASCC 1275
Borreliella burgdorferi N40
Pseudomonas syringae pv. tomato str. DC3000
Mycobacterium tuberculosis H37Rv
Lentibacter sp
Helicobacter pylori G27
Acinetobacter baumannii ACICU (unknown)
Helicobacter pylori F30
Helicobacter pylori Sat464
Streptococcus thermophilus
Collinsella intestinalis DSM 13280
Bradyrhizobium sp. ORS 278
Escherichia coli str. K-12 substr. DH10B
Synechocystis sp. PCC 6803
Shewanella baltica OS185
Helicobacter pylori SouthAfrica20
Mycobacterium marinum M
Borreliella burgdorferi CA382
Klebsiella pneumoniae
Prochlorococcus marinus str. NATL2A
Borreliella burgdorferi ZS7
Bacillus anthracis str. Sterne
Borreliella burgdorferi (Lyme disease spirochete)
Staphylococcus aureus subsp. aureus JH9
Helicobacter pylori
Helicobacter pylori P12
Burkholderia pseudomallei 1710b
Shewanella putrefaciens CN-32
Bifidobacterium animalis (Bifidobacterium lactis)
Vibrio cholerae O1 biovar El Tor str. N16961
Klebsiella pneumoniae CG43
Pseudomonas stutzeri RCH2
Helicobacter pylori 26695
Mycobacterium avium 104
Burkholderia pseudomallei 1106a
Pseudomonas syringae pv. phaseolicola 1448A
Mycobacterium ulcerans Agy99
Shewanella sp. MR-4
Acinetobacter oleivorans DR1
Helicobacter pylori Shi112
Helicobacter pylori OK310
Helicobacter pylori 2018
Bacillus anthracis str. Ames
Campylobacter concisus
Helicobacter pylori Rif1
Helicobacter pylori Puno120
Helicobacter pylori ELS37
Staphylococcus aureus subsp. aureus MW2
KBase_KBase
Shewanella halifaxensis HAW-EB4
Pseudomonas viridiflava CFBP 1590 isolate E12-5
Pseudomonas aeruginosa UCBPP-PA14
Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Shigella flexneri 2a str. 301
Bacillus cereus ATCC 10987
Bacillus thuringiensis str. Al Hakam
Pseudomonas putida F1
Pseudomonas putida W619
Carnobacterium maltaromaticum
Salmonella enterica subsp. enterica serovar Typhi str. CT18
Enterococcus faecalis str. Symbioflor 1
Streptobacillus moniliformis DSM 12112
Riemerella anatipestifer RA-CH-1
Helicobacter pylori F32
Corynebacterium diphtheriae NCTC 13129
Pseudomonas aeruginosa
Salmonella enterica subsp. enterica serovar Choleraesuis str.SC-B67
Genus species
Akkermansia muciniphila
Burkholderia pseudomallei K96243
Mesorhizobium loti MAFF303099
Helicobacter pylori J99
Ralstonia solanacearum GMI1000
Rickettsia massiliae MTU5
Fusobacterium nucleatum subsp. nucleatum ATCC 25586
Mycoplasma mycoides_cluster
Escherichia coli SE15
Shigella flexneri 2a str. 2457T
Streptococcus pyogenes MGAS2096
Campylobacter concisus 13826
Acinetobacter sp. ADP1
Brucella suis ATCC 23445
Staphylococcus warneri
Helicobacter pylori BM012A
Alkaliphilus metalliredigens QYMF
Escherichia coli O157:H7 str. Sakai
Staphylococcus aureus subsp. aureus USA300_FPR3757
Yersinia pseudotuberculosis IP 32953
Helicobacter pylori 51
Burkholderia mallei NCTC 10247
Streptococcus pyogenes MGAS10750
Desulfurobacterium thermolithotrophum DSM 11699
Shewanella baltica OS155
Lactobacillus plantarum WCFS1
Salmonella enterica subsp. enterica serovar Minnesota
Vibrio vulnificus YJ016
Frankia alni ACN14a
Sinorhizobium meliloti 1021
Pseudomonas aeruginosa DHS01
Streptococcus pyogenes M1 GAS
Staphylococcus aureus subsp. aureus Mu50
Rickettsia canadensis str. McKiel
Burkholderia lata
Gordonibacter urolithinfaciens
Staphylococcus aureus subsp. aureus Mu3
Streptococcus pyogenes MGAS8232
Aeromonas hydrophila subsp. hydrophila ATCC 7966
Xanthomonas campestris
Shewanella sp. ANA-3
Shigella dysenteriae Sd197
Helicobacter pylori F16
Helicobacter pylori B38
Helicobacter pylori India7 (Helicobacter pylori Ind7)
Shigella sonnei Ss046
Candidatus Saccharibacteria bacterium oral taxon 955
Wolbachia endosymbiont strain TRS of Brugia malayi
Helicobacter pylori 908
Streptococcus pneumoniae R6
Escherichia coli str. K-12 substr. W3110
Pseudomonas putida KT2440
Helicobacter pylori Shi470
Yersinia pseudotuberculosis YPIII
Corynebacterium glutamicum R
Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188
Thermotoga maritima MSB8 MSB8
Burkholderia pseudomallei 668
Acinetobacter calcoaceticus PHEA-2
Achromobacter xylosoxidans NH44784-1996
Clostridium botulinum A str. Hall
Bradyrhizobium sp. BTAi1
Helicobacter pylori F57
Helicobacter pylori v225d
Enterococcus faecium Aus0085
Wolbachia endosymbiont of Onchocerca volvulus str. Cameroon
Staphylococcus aureus subsp. aureus N315
Streptococcus pyogenes MGAS10394
Helicobacter pylori SouthAfrica7 (Helicobacter pylori SAfr7)
Burkholderia cenocepacia J2315
Helicobacter pylori B8
Helicobacter pylori UM037
Helicobacter pylori OK113
Salmonella enterica subsp. enterica serovar Typhi str. Ty2
Yersinia pestis Angola
Shigella boydii Sb227
Escherichia coli 536
Pseudomonas putida GB-1
Streptococcus pneumoniae Hungary19A-6
Helicobacter pylori UM032
Helicobacter pylori XZ274
Staphylococcus species
Shewanella sp. W3-18-1
Burkholderia cenocepacia HI2424
Acinetobacter baumannii
Bordetella petrii DSM 12804
Bacillus halodurans C-125 C-125
Acinetobacter baumannii SDF
Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7
Corynebacterium glutamicum ATCC 13032
Agrobacterium rhizogenes (Rhizobium rhizogenes)
Candidatus Saccharimonas aalborgensis
Helicobacter pylori Puno135
Escherichia e.coli
Helicobacter pylori Shi169
Riemerella anatipestifer
Shewanella baltica OS195
Streptococcus sanguinis SK36
Burkholderia ambifaria MC40-6
C) Potential GIs and PAIs in scaffold00000001 (
download
)
S.No
Start
End
Bias
Virulence
Insertion elements
Prediction
Y
N
N
1
11
3.099216
Cell-division-associated, ABC-transporter-like
0
11
2.821793
Signal recognition particle receptor FtsY
0
13
3.021978
0
15
3.537527
FIG015547: peptidase, M16 family
0
14
3.911481
FIG015287: Zinc protease
-1
14
3.317803
16S rRNA (guanine(966)-N(2))-methyltransferase
-2
15
2.728063
hypothetical protein
-2
14
4.069871
Hydrolase, alpha/beta fold family functionally
0
11
3.669973
Transcriptional regulator, AcrR family
-1
11
3.245923
Aldehyde dehydrogenase (EC 1.2.1.3); Probable
1
12
3.168979
FIG028932: hypothetical protein
2
13
2.842125
FIG022869: Oxidoreductase, GMC family
2
14
3.311496
Phosphopantetheine adenylyltransferase (EC
2
14
1.636274
Uncharacterized ferredoxin-like protein YfhL
2
17
1.577710
Gamma-glutamyltranspeptidase (EC 2.3.2.2) @
1
19
1.583598
Sodium-dependent phosphate transporter
2
20
1.120740
Cation/multidrug efflux pump
0
19
2.153045
Formamidopyrimidine-DNA glycosylase (EC
0
18
2.051034
Predicted signal transduction protein
1
19
2.188963
Intracellular protease
0
19
2.569834
23S rRNA (cytosine(1962)-C(5))-methyltransferase
1
16
3.146889
1
15
3.767744
Dihydroxy-acid dehydratase (EC 4.2.1.9)
0
13
3.033481
Xanthine permease
0
13
3.294178
3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7)
1
16
3.254977
ADP compounds hydrolase NudE
1
16
3.259409
GMP/IMP nucleotidase YrfG
Y
N
N
-2
15
3.402382
-2
16
2.829674
TRAP dicarboxylate transporter, DctQ subunit,
-2
17
2.884190
TRAP dicarboxylate transporter, DctM subunit,
-1
16
3.806690
SAM-dependent methyltransferase
-1
16
3.374561
tRNA-Thr-TGT
-2
17
4.168584
DedA family; putative alkaline phosphatase-like
-1
17
3.959689
Uncharacterized outer membrane protein YaiW
-1
17
4.590082
0
18
5.043565
D-beta-hydroxybutyrate permease
1
18
4.016275
3-hydroxybutyrate dehydrogenase (EC 1.1.1.30)
-1
19
4.012170
Succinyl-CoA:3-ketoacid-coenzyme A transferase
1
18
3.822570
Succinyl-CoA:3-ketoacid-coenzyme A transferase
2
20
3.697867
Glycogen phosphorylase (EC 2.4.1.1)
3
18
2.924236
1
17
2.990119
Putative oxidoreductase YncB
1
16
3.142868
Alcohol dehydrogenase (EC 1.1.1.1)
2
15
3.889780
Hypothetical protein VC0266 (sugar utilization
2
15
3.967690
putative lipoprotein
0
15
4.029651
FIG00953722: hypothetical protein
-1
15
4.006615
N5-carboxyaminoimidazole ribonucleotide synthase
1
15
3.982088
N5-carboxyaminoimidazole ribonucleotide mutase
0
15
4.660101
Response regulator c-di-GMP phosphodiesterase,
1
14
4.106883
Two-component system sensor histidine kinase
1
13
4.014183
4-hydroxyphenylpyruvate dioxygenase (EC
0
13
3.566965
4-hydroxyphenylpyruvate dioxygenase (EC
1
14
3.542376
hypothetical protein
1
14
4.041196
LysR-family transcriptional regulator PA5428
Y
N
N
1
13
3.919858
Diaminobutyrate--2-oxoglutarate transaminase (EC
1
13
4.511679
L-ectoine synthase (EC 4.2.1.108)
5
14
6.180077
Ectoine hydroxylase
1
14
5.419817
Aspartokinase (EC 2.7.2.4) associated with
1
17
4.889835
hypothetical protein
1
17
4.247046
Uncharacterized protease YegQ
0
18
3.370380
General secretion pathway protein M
0
17
3.375701
General secretion pathway protein L
1
15
2.620983
General secretion pathway protein K
3
17
2.238987
General secretion pathway protein J
3
14
1.887063
General secretion pathway protein I
1
12
1.946682
General secretion pathway protein H
1
13
2.359622
General secretion pathway protein G
1
14
2.005347
General secretion pathway protein F
1
12
2.153688
General secretion pathway protein E
2
14
3.147613
2
17
2.576941
NAD(P) transhydrogenase N-domain of subunit alpha
2
22
0.244321
NAD(P) transhydrogenase C-domain of subunit alpha
3
24
-0.538726
NAD(P) transhydrogenase subunit beta (EC
6
27
-2.697104
Transcriptional regulator YeiE, LysR family
6
28
-3.053118
UPF0324 inner membrane protein YeiH
5
29
-3.840483
FIG00961396: hypothetical protein
5
27
-4.386732
3
24
-3.159198
Holliday junction resolvasome, helicase subunit
2
22
-2.201003
FIG00953248: hypothetical protein
Y
N
N
1
12
-3.133018
Lysophospholipase (EC 3.1.1.5)
1
13
-3.760825
Ribonucleotide reductase of class II (coenzyme
1
13
-3.704768
Ribonucleotide reductase of class II (coenzyme
2
19
-4.952590
Pyrimidine/purine nucleotide 5'-monophosphate
1
25
-5.966289
Homoserine kinase (EC 2.7.1.39)
-1
14
-1.796609
FIG00953549: hypothetical protein
2
14
2.163754
DNA polymerase I (EC 2.7.7.7)
1
14
2.440701
VgrG protein
2
16
2.452650
Y
N
N
0
12
3.112164
Catalase KatE-intracellular protease (EC
0
12
3.910574
Methionine ABC transporter ATP-binding protein
-1
12
3.939794
Methionine ABC transporter permease protein
1
13
5.244580
Methionine ABC transporter substrate-binding
2
12
3.914591
Malonate utilization transcriptional regulator
0
13
3.362178
D-amino acid dehydrogenase (EC 1.4.99.6)
0
15
3.135600
Malonate transporter, MadM subunit
0
16
3.019491
Malonate transporter, MadL subunit
0
17
3.123991
Malonyl CoA-acyl carrier protein transacylase (EC
0
20
2.464294
Malonate decarboxylase
1
20
3.610285
Malonate decarboxylase gamma subunit
1
18
4.195151
Malonate decarboxylase beta subunit
3
16
4.483473
Malonate decarboxylase delta subunit
1
17
4.347859
Triphosphoribosyl-dephospho-CoA synthase (EC
1
15
5.113240
Malonate decarboxylase alpha subunit
1
15
5.249957
MFS-type efflux pump ArsJ specific for
2
15
5.403879
NAD-dependent glyceraldehyde-3-phosphate
-1
16
5.479351
UPF0060 membrane protein YnfA
-1
16
4.099959
Arsenic resistance protein ArsH
-1
16
2.728708
Arsenical resistance operon repressor
0
17
2.169252
hypothetical protein
0
17
1.238667
Uncharacterized membrane protein, YraQ family
0
15
0.649372
0
14
1.446522
Oxidoreductase
1
12
1.908985
PhnH protein
3
13
2.213058
Ribose 1,5-bisphosphate phosphokinase PhnN (EC
Y
N
N
2
22
-1.266957
FIG00957502: hypothetical protein
3
24
-1.257525
FIG00956226: hypothetical protein
4
26
-1.106032
Phytochrome, two-component sensor histidine
2
19
-0.794824
Response regulator
2
20
0.078386
PAS/PAC sensor hybrid histidine kinase
0
14
0.258852
hypothetical protein
0
13
0.468670
Peptidase S1, chymotrypsin:PDZ/DHR/GLGF domain
2
12
0.176268
Peptidase, M48 family
2
13
-0.361063
FIG00799023: hypothetical protein
Y
N
N
3
19
-1.762133
phospholipase D/Transphosphatidylase
3
19
-2.344039
FIG00962753: hypothetical protein
5
25
-3.967989
Mobile element protein
4
26
-4.424964
1
23
-5.072710
Glutamine--fructose-6-phosphate aminotransferase
1
23
-4.991579
Transcriptional regulator of glmS gene, DeoR
0
22
-4.703358
N-acetylglucosamine-1-phosphate uridyltransferase
-2
20
-3.823950
ATP synthase epsilon chain (EC 3.6.3.14)
-3
17
-3.226431
ATP synthase beta chain (EC 3.6.3.14)
-2
13
-2.457981
ATP synthase gamma chain (EC 3.6.3.14)
-2
13
-1.329488
ATP synthase alpha chain (EC 3.6.3.14)
-2
11
-1.775732
ATP synthase delta chain (EC 3.6.3.14)
-1
11
-2.130968
ATP synthase F0 sector subunit b (EC 3.6.3.14)
-2
13
-2.476633
ATP synthase F0 sector subunit c (EC 3.6.3.14)
-1
14
-2.575735
ATP synthase F0 sector subunit a (EC 3.6.3.14)
0
19
-4.232621
ATP synthase protein I
1
20
-5.466209
Chromosome (plasmid) partitioning protein ParB
1
30
-5.855349
Chromosome (plasmid) partitioning protein ParA
2
23
-5.805036
16S rRNA (guanine(527)-N(7))-methyltransferase
2
16
-4.377088
tRNA-5-carboxymethylaminomethyl-2-thiouridine(34)
1
15
-4.317091
tRNA-5-carboxymethylaminomethyl-2-thiouridine(34)
0
10
-3.427679
Inner membrane protein translocase and chaperone
0
9
-3.002396
Membrane protein insertion efficiency factor
-1
9
-1.647784
Ribonuclease P protein component (EC 3.1.26.5)
-2
12
0.497010
LSU ribosomal protein L34p
-1
11
0.362359
Chromosomal replication initiator protein DnaA
-1
14
2.226588
DNA polymerase III beta subunit (EC 2.7.7.7)
0
15
2.651921
DNA recombination and repair protein RecF
2
13
4.726626
DNA gyrase subunit B (EC 5.99.1.3)
-1
15
4.076407
Alkyl hydroperoxide reductase protein F
0
16
3.187146
repeat region
-1
17
3.006146
Mobile element protein
0
17
2.010575
hypothetical protein, INTERPRO-suggestion:
0
14
1.898332
FIG01089058: hypothetical protein
-1
15
1.437253
PUTATIVE ZINC PROTEASE PROTEIN
2
11
0.998219
2
19
0.485626
putative lipoprotein
0
14
0.301287
Luciferase-like monooxygenase YhbW
-1
15
-0.284414
Protein YrdA
-1
15
-0.035728
Transcriptional regulator, AraC family
-1
16
-0.956946
Sodium/bile acid symporter family
1
19
-1.131983
Oligopeptidase A (EC 3.4.24.70)
0
18
-0.395388
Uncharacterized protein PA0068
0
18
0.332214
hypothetical protein
2
15
2.999098
3
14
2.804711
Radical SAM domain protein
2
15
3.975603
3
15
4.340106
5
12
4.241137
Cytochrome c oxidase polypeptide II (EC 1.9.3.1)
3
11
4.382412
Cytochrome c oxidase polypeptide I (EC 1.9.3.1)
1
13
3.933164
Cytochrome oxidase biogenesis protein Cox11-CtaG,
1
13
4.162228
Cytochrome c oxidase polypeptide III (EC
1
14
4.100677
hypothetical protein
0
16
3.595634
Cytochrome oxidase biogenesis protein Surf1,
0
15
4.409753
Hypothetical protein in cytochrome oxidase
0
18
3.814454
Heme A synthase, cytochrome oxidase biogenesis
1
21
2.889571
Heme O synthase, protoheme IX
2
20
3.393500
Cytochrome oxidase biogenesis protein
2
21
3.576021
hypothetical protein
2
19
4.687889
hypothetical protein
2
20
4.527096
HemK family modification methylase PA2179
3
18
5.477948
hypothetical protein
3
18
5.930133
1
17
5.043433
0
16
4.810393
Flagellar P-ring protein FlgI
0
16
4.256862
Soluble lytic murein transglycosylase precursor
0
17
4.105230
Flagellar hook-associated protein FlgK
0
17
3.250362
Flagellar hook-associated protein FlgL
2
18
2.517162
2
18
2.614483
hypothetical protein
1
18
2.862888
6-phosphogluconolactonase (EC 3.1.1.31)
1
17
2.847028
Acyl-CoA dehydrogenase (EC 1.3.8.1),
2
16
2.447525
Sensory box histidine kinase/response regulator
1
14
2.681179
putative iron-regulated membrane protein
-2
15
2.949347
Ferrichrome-iron receptor
-2
16
3.024188
Dodecin, a flavin storage/sequestration protein
Y
N
N
6
23
-3.184209
Transcriptional regulator, LysR family
7
24
-3.281435
Tryptophan synthase beta chain (EC 4.2.1.20)
8
32
-3.773155
Tryptophan synthase alpha chain (EC 4.2.1.20)
8
27
-2.939227
FIG00958400: hypothetical protein
6
21
-2.303136
hypothetical protein
6
21
-2.347682
Toxin HigB / Protein kinase domain of HipA
-2
13
3.594694
-1
17
3.781581
Glutathione S-transferase (EC 2.5.1.18)
-1
18
3.298886
-2
18
2.913092
-2
17
2.309141
hypothetical protein
-1
17
2.849553
1
12
2.607599
3
12
2.271855
hypothetical protein
4
10
2.939070
Uncharacterized MFS-type transporter YtbD
2
10
2.465350
Transcriptional regulator PA1859, LysR family
1
9
2.594261
2
9
2.489948
Phosphoglucomutase (EC 5.4.2.2)
Y
N
N
1
18
5.111998
Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14)
0
19
4.577992
Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)
0
17
4.447262
Histidinol-phosphatase (EC 3.1.3.15)
1
16
4.806526
Acyl-CoA:1-acyl-sn-glycerol-3-phosphate
1
16
3.824014
Diguanylate cyclase (EC 2.7.7.65) =>
1
16
3.138958
repeat region
Y
N
N
2
17
4.087503
diguanylate cyclase/phosphodiesterase (GGDEF &
3
15
4.573383
ATP-dependent DNA helicase UvrD/PcrA (EC
2
17
4.711917
TRAP transporter solute receptor, unknown
1
19
4.331655
putative membrane protein
1
17
4.110209
hypothetical protein
-1
20
3.130315
Formate dehydrogenase O alpha subunit (EC
0
21
3.792176
Formate dehydrogenase O alpha subunit (EC
-1
18
3.330978
Formate dehydrogenase O beta subunit (EC
-1
18
3.419842
Formate dehydrogenase O gamma subunit (EC
-2
16
3.631282
Formate dehydrogenase formation protein FdhE
-2
15
3.282420
L-seryl-tRNA(Sec) selenium transferase (EC
-2
15
2.613220
Selenocysteine-specific translation elongation
-3
13
2.141110
Urea carboxylase-related ABC transporter,
-2
15
2.996879
Urea carboxylase-related ABC transporter,
-1
14
3.903860
Urea carboxylase-related aminomethyltransferase
0
15
4.108614
Urea carboxylase-related aminomethyltransferase
2
16
4.956068
4
15
6.706013
Urea carboxylase (EC 6.3.4.6)
4
15
6.259056
Allophanate hydrolase (EC 3.5.1.54)
4
16
5.540149
Potassium efflux system KefA protein /
1
15
5.207007
-1
15
3.976233
oxidoreductase, aldo/keto reductase family
-2
17
3.290288
Urea carboxylase-related ABC transporter,
Y
N
N
1
13
3.110907
Homoserine O-acetyltransferase (EC 2.3.1.31)
1
12
3.000433
Glutamine synthetase type III (EC 6.3.1.2)
2
12
3.452518
Urea carboxylase-related ABC transporter,
2
12
3.768329
Transcriptional regulator, AcrR family
-2
12
3.370871
Similar to Glycine cleavage system H protein
-1
12
3.776342
putative protein
-2
11
3.357583
Cyclopropane-fatty-acyl-phospholipid synthase (EC
Y
N
N
-1
12
3.340464
hypothetical protein
-1
12
3.574778
Enoyl-CoA hydratase (EC 4.2.1.17) /
1
13
4.256975
Acyl-CoA dehydrogenase, long-chain specific (EC
1
13
4.526571
Acyl-CoA dehydrogenase family protein
2
13
4.843448
FIG00962026: hypothetical protein
1
14
3.976929
Transcriptional regulator, AcrR family
2
13
3.307155
Transcriptional regulator, IclR family
2
12
3.136725
LSU ribosomal protein L28p @ LSU ribosomal
1
11
3.133427
LSU ribosomal protein L33p @ LSU ribosomal
Y
N
N
-1
15
3.303419
-1
15
3.097235
Alginate biosynthesis two-component system sensor
-1
13
3.049661
Alginate biosynthesis two-component system
1
14
3.986188
hypothetical protein
0
13
3.723346
-1
14
1.310617
UPF0391 membrane protein YtjA
-1
12
0.701460
Gate supefamily SpmA/SpmB domains protein
-1
10
1.275839
-1
11
1.370834
Ammonia monooxygenase
-3
11
0.811105
Tripartite tricarboxylate transporter TctA
-1
11
2.943647
Tripartite tricarboxylate transporter TctB
0
10
4.178946
Tripartite tricarboxylate transporter TctC
1
11
5.240359
Outer membrane low permeability porin, OprD
2
11
5.572409
Tricarboxylate transport transcriptional
3
11
5.927156
Tricarboxylate transport sensor protein TctE
2
12
5.556682
Aerotaxis sensor receptor protein
2
12
4.915532
1
12
3.346321
-1
14
1.300226
repeat region
-2
14
1.224861
Aerotaxis sensor receptor protein
-1
14
0.311190
0
17
0.038074
TRAP transporter solute receptor, TAXI family
-1
16
0.519424
TRAP-type uncharacterized transport system, fused
-1
15
1.455232
Sodium-dependent phosphate transporter
0
12
2.686307
conserved hypothetical secreted protein
3
10
3.961448
4
10
4.576159
Exodeoxyribonuclease V gamma chain (EC 3.1.11.5)
3
8
4.124589
Exodeoxyribonuclease V beta chain (EC 3.1.11.5)
2
8
3.980328
Exodeoxyribonuclease V alpha chain (EC 3.1.11.5)
1
10
3.349976
hypothetical protein
Y
N
Y
2
24
-1.306535
Ubiquinone biosynthesis protein UbiJ
1
17
-1.801767
2-methoxy-6-polyprenyl-1,4-benzoquinol methylase
1
15
-4.526154
FIG00954300: hypothetical protein
0
17
-5.127365
FIG00899427: hypothetical protein
4
32
-9.370728
ATP-dependent hsl protease ATP-binding subunit
8
58
-15.155298
ATP-dependent protease subunit HslV (EC
5
36
-9.309832
tRNA (cytidine(34)-2'-O)-methyltransferase (EC
4
32
-8.725756
3
23
-5.411509
Nitrogen regulation protein NR(I), GlnG (=NtrC)
3
22
-3.662900
Nitrogen regulation protein NtrB (EC 2.7.13.3)
-1
14
-0.795228
FIG00953806: hypothetical protein
-1
13
2.891004
FIG00956533: hypothetical protein
0
14
4.388379
1
13
5.003147
Glutamine synthetase type I (EC 6.3.1.2)
2
13
4.404104
tRNA 4-thiouridine synthase (EC 2.8.1.4) /
2
15
3.548498
GTP-binding protein TypA/BipA
2
16
3.690268
GTP-binding protein TypA/BipA
1
17
4.214152
Integron integrase IntI4
1
19
3.710021
0
20
3.387987
0
20
3.922826
hypothetical protein
1
21
4.037194
4
21
4.504637
diguanylate cyclase/phosphodiesterase (GGDEF &
7
21
4.907535
Predicted polyamine sensor NspS, involved in
8
21
5.112764
Assimilatory nitrate reductase large subunit
14
20
7.024824
Heterodisulfide reductase, cytochrome reductase
11
19
5.695208
hypothetical protein
13
18
6.254797
hypothetical protein
10
18
5.121296
9
16
4.596713
Lactoylglutathione lyase (EC 4.4.1.5)
9
15
4.656616
7
15
3.900512
hypothetical protein
6
14
4.640827
Glucose-methanol-choline (GMC) oxidoreductase:NAD
1
14
3.640124
anion-transporting ATPase
-1
13
3.287034
FIG059250: hypothetical protein
Y
N
N
0
14
3.003957
0
14
3.370129
Glycolate dehydrogenase (EC 1.1.99.14),
-1
10
3.713384
Hypothetical protein GlcG in glycolate
-2
10
2.882351
Malate synthase G (EC 2.3.3.9)
-2
9
3.167875
L-lactate permease
-2
9
2.491449
Rubredoxin
-1
12
1.907575
Rubredoxin-NAD(+) reductase (EC 1.18.1.1)
4
24
-0.615134
DNA-binding protein HU
7
30
-1.832125
Superfamily II DNA and RNA helicases
7
28
-1.211553
Transcriptional regulator, LysR family
4
21
-1.363895
Glutaryl-CoA dehydrogenase (EC 1.3.8.6)
3
19
-1.547596
Uncharacterized protein PA0446
1
17
-1.367213
Zinc-type alcohol dehydrogenase-like protein
0
16
-1.085288
Transcriptional regulator PA3565, LysR family
-1
14
-0.944141
LemA family protein
1
13
-1.697871
Beta-propeller domains of methanol dehydrogenase
2
14
-2.064420
FIG004694: Hypothetical protein
2
13
-2.393500
Cell division-associated, ATP-dependent zinc
2
13
-1.539828
hypothetical protein
Y
N
N
2
14
0.516581
UPF0047 protein YjbQ
3
12
1.001374
FIG00953808: hypothetical protein
5
12
0.633829
2-haloalkanoic acid dehalogenase (EC 3.8.1.2)
2
12
3.037858
Site-specific tyrosine recombinase XerC
1
13
2.751558
Protein of unknown function DUF484
1
11
2.775771
Diaminopimelate epimerase (EC 5.1.1.7)
0
9
2.267903
Diaminopimelate decarboxylase (EC 4.1.1.20)
1
11
1.811187
Diaminopimelate decarboxylase and/or
1
10
1.979501
Frataxin homolog CyaY, facilitates Fe-S cluster
-1
10
1.134373
Regulator of nucleoside diphosphate kinase
2
14
1.662874
Adenylate cyclase (EC 4.6.1.1)
3
13
1.753946
DNA-binding protein inhibitor Id-2-related
3
14
2.059501
FIG00954215: hypothetical protein
4
14
1.843739
Uncharacterized protein Tcr_0936
8
17
2.199542
Mobile element protein
9
16
2.101170
7
12
1.758594
hypothetical protein
6
12
1.542472
5
12
0.815327
hypothetical protein
4
11
1.332432
2
11
1.085213
NnrS protein involved in response to NO
2
10
1.347842
Argininosuccinate lyase (EC 4.3.2.1)
Y
N
N
1
15
-3.227877
Porphobilinogen synthase (EC 4.2.1.24)
1
16
-4.372578
Polyphosphate kinase (EC 2.7.4.1)
1
17
-4.867213
Exopolyphosphatase (EC 3.6.1.11)
0
25
-5.832677
Thioredoxin
0
26
-5.872809
0
29
-4.940803
Transcription termination factor Rho
-1
21
-3.697730
3-polyprenyl-4-hydroxybenzoate carboxy-lyase (EC
0
18
-3.511332
2-polyprenylphenol hydroxylase and related
Y
N
N
-2
27
-3.727092
Type IV pilus biogenesis protein PilN
0
25
-4.456679
Type IV pilus biogenesis protein PilO
0
27
-4.957776
Type IV pilus biogenesis protein PilP
1
39
-8.424169
Type IV pilus biogenesis protein PilQ
5
54
-13.410019
Shikimate kinase I (EC 2.7.1.71)
6
56
-14.081479
3-dehydroquinate synthase (EC 4.2.3.4)
5
54
-13.132977
Septum-associated cell division protein DamX
6
65
-15.426316
Glutamate synthase [NADPH] large chain (EC
7
59
-14.230004
Glutamate synthase [NADPH] small chain (EC
7
52
-12.594165
Uroporphyrinogen III decarboxylase (EC 4.1.1.37)
5
37
-8.569636
FIG00953225: hypothetical protein
5
34
-7.850633
putative outermembrane protein
5
34
-8.425201
4
28
-6.373489
FIG00965478: hypothetical protein
4
31
-6.482229
Thioredoxin 2
4
32
-7.063441
O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) @
4
30
-6.388614
repeat region
1
24
-5.022528
hypothetical protein
1
24
-4.750200
Mobile element protein
1
20
-3.431887
Transposase
2
20
-3.153421
FIG00966635: hypothetical protein
0
14
-1.356279
DNA-cytosine methyltransferase (EC 2.1.1.37)
0
12
-0.777043
hypothetical protein
2
16
-0.570899
1
14
-0.318901
Mrr restriction system protein
0
15
0.377100
hypothetical protein
-3
11
-1.128160
FIG00960913: hypothetical protein
-2
11
-1.925851
0
11
-2.936935
RelB/StbD replicon stabilization protein
0
13
-2.850806
hypothetical protein
-1
14
-2.660771
0
15
-3.592894
hypothetical protein
Y
N
Y
-1
13
3.491004
Acyl-phosphate:glycerol-3-phosphate
-3
11
3.429937
Dihydroneopterin aldolase (EC 4.1.2.25)
-2
9
2.942552
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine
0
9
1.696531
CCA tRNA nucleotidyltransferase (EC 2.7.7.72)
1
11
0.752559
FIG004684: SpoVR-like protein
0
9
0.429497
UPF0229 protein YeaH
1
10
-0.216109
Uncharacterized protein YeaG
2
9
-2.007813
Thiosulfate sulfurtransferase GlpE (EC 2.8.1.1)
0
10
-1.040815
Bis(5'-nucleosyl)-tetraphosphatase, symmetrical
0
10
-0.808470
ApaG protein
2
12
-1.366992
SSU rRNA
0
8
1.797548
4-hydroxythreonine-4-phosphate dehydrogenase (EC
0
21
-2.777820
Periplasmic chaperone and peptidyl-prolyl
5
38
-6.711195
LPS-assembly protein LptD @ Organic solvent
6
51
-10.555516
Phosphotransferase involved in
6
55
-11.520676
Nucleotidyl transferase possibly involved in
5
55
-11.545560
DnaJ-like protein DjlA
4
72
-17.252971
FIG00953890: hypothetical protein
4
64
-14.984797
Ribulose-phosphate 3-epimerase (EC 5.1.3.1)
2
56
-13.195413
Phosphoglycolate phosphatase (EC 3.1.3.18)
4
51
-9.894792
Anthranilate synthase, aminase component (EC
3
49
-9.695346
Anthranilate synthase, amidotransferase component
2
41
-8.763066
Anthranilate phosphoribosyltransferase (EC
3
33
-6.651107
Indole-3-glycerol phosphate synthase (EC
3
29
-5.426048
Cyclic AMP receptor protein
2
24
-4.309592
Protein YhfA
2
26
-5.973238
S-adenosylmethionine decarboxylase proenzyme (EC
1
25
-5.676212
Ferrous-iron efflux pump FieF
2
31
-6.520971
Uncharacterized protein PA3962
0
31
-6.444780
0
32
-6.741993
ATP-dependent helicase HrpB
1
36
-7.595444
site-specific recombinase, phage integrase
5
31
-5.409747
hypothetical protein
4
31
-6.118720
3
30
-5.856828
4
36
-7.615763
Transcriptional regulator, Xre family
4
39
-7.865719
3
40
-8.543523
GGDEF domain protein
5
40
-9.541815
3
38
-8.587897
3
39
-8.688665
2
33
-7.438060
Mobile element protein
1
29
-7.307092
repeat region
0
28
-6.957724
Mobile element protein
0
24
-5.764523
hypothetical protein
0
23
-5.395963
Mobile element protein
0
17
-1.475591
Copper sensory histidine kinase CusS
2
18
-1.168126
Copper-sensing two-component system response
-1
19
-0.902905
-1
21
-0.783510
Lead, cadmium, zinc and mercury transporting
-1
23
-2.572547
Heavy metal transport/detoxification protein
0
24
-2.636098
CopG protein
0
30
-4.714567
Cytochrome c-type biogenesis protein DsbD,
0
32
-4.687789
Multicopper oxidase
2
29
-4.431353
1
23
-3.547491
Copper resistance protein B
3
15
0.889062
Cytochrome c family protein
2
14
1.528895
Hypothetical protein involved in heavy metal
2
11
1.759001
0
11
2.359897
repeat region
-1
11
2.566286
Transposase and inactivated derivatives, IS30
-1
13
2.378183
-1
13
2.904378
repeat region
0
14
2.921161
Transposase and inactivated derivatives, IS30
0
15
3.080928
2
13
3.878104
FIG00958355: hypothetical protein
1
12
4.129433
Bll4814 protein
0
12
4.126985
0
12
3.990060
Flavodoxin reductases (ferredoxin-NADPH
-1
13
4.639558
-1
12
5.012394
Copper/silver efflux RND transporter, outer
-2
14
4.571351
Copper/silver efflux RND transporter, membrane
-3
13
4.371291
Copper/silver efflux RND transporter,
-2
13
4.545818
-1
12
4.637275
0
11
3.513317
Y
N
N
2
13
-1.318086
SSU ribosomal protein S6p
3
10
-1.803769
SSU ribosomal protein S18p @ SSU ribosomal
2
10
-1.298179
FIG003573: hypothetical protein
3
11
-0.137325
LSU ribosomal protein L9p
2
11
0.171569
Replicative DNA helicase (DnaB) (EC 3.6.4.12)
1
10
0.551043
Alanine racemase (EC 5.1.1.1)
0
10
0.348305
FIG00954617: hypothetical protein
0
10
1.501722
FIG00954617: hypothetical protein
2
11
1.797548
UPF0313 [4Fe-4S] protein YgiQ
2
11
2.572402
Methyl-accepting chemotaxis sensor/transducer
2
12
2.726340
Two-component system response regulator protein
0
11
2.960102
FIG014328: hypothetical protein
-1
13
3.612356
Type IV fimbriae expression regulatory protein
-1
13
4.234806
Two-component sensor PilS
0
12
4.566985
FIG00953647: hypothetical protein
-1
13
3.506345
Outer membrane beta-barrel assembly protein BamD
-1
10
3.538837
LSU rRNA pseudouridine(1911/1915/1917) synthase
1
10
2.839591
FIG00003370: Multicopper polyphenol oxidase
2
11
3.088218
Chaperone protein ClpB (ATP-dependent unfoldase)
4
14
2.678624
tRNA-Asn-GTT
3
16
1.425334
tRNA-Pro-TGG
Y
N
N
0
16
3.015169
Cell division protein ZapE
0
15
2.571370
Transcriptional regulator, AraC family
2
14
3.771881
Endonuclease V (EC 3.1.21.7)
2
12
3.450295
1,6-anhydro-N-acetylmuramyl-L-alanine amidase
2
12
4.062740
Membrane protein required for beta-lactamase
2
12
4.303648
Methyl-accepting chemotaxis sensor/transducer
2
13
3.488319
Putative deoxyribonuclease YjjV
3
13
4.229465
1
14
3.628504
Methylphosphotriester-DNA--protein-cysteine
2
14
4.193207
protein of unknown function RIO1
1
13
3.598421
Deacetylases, including yeast histone deacetylase
1
14
3.226916
Acyl-CoA thioesterase II (EC 3.1.2.-)
2
13
4.067605
Hydrolase in polyol utilization gene cluster,
2
14
3.458761
YpfJ protein, zinc metalloprotease superfamily
2
15
3.280048
CopG protein
1
16
2.956904
hypothetical protein
2
17
3.237194
Nitric oxide -responding transcriptional
1
16
3.386392
Nitrate/nitrite response regulator protein
2
16
3.396160
Nitrate/nitrite sensor protein NarX
1
16
3.153160
Nitrate/nitrite transporter NarK/U 1
1
14
3.397778
Nitrate/nitrite transporter NarK/U
1
13
3.780046
Respiratory nitrate reductase alpha chain (EC
0
13
3.944825
Respiratory nitrate reductase beta chain (EC
1
14
3.969088
Respiratory nitrate reductase delta chain (EC
2
12
4.231775
Respiratory nitrate reductase gamma chain (EC
2
15
4.725922
PpiC-type peptidyl-prolyl cis-trans isomerase
1
18
4.434055
GTP 3',8-cyclase (EC 4.1.99.22)
1
20
4.856071
Molybdenum cofactor biosynthesis protein MoaB
2
18
4.955276
Molybdopterin molybdenumtransferase (EC
1
17
5.053730
Cytochrome b561
-1
20
4.975768
Sensory histidine kinase QseC
-1
19
4.356625
Two-component system response regulator QseB
0
16
5.056264
FIG00953528: hypothetical protein
-1
20
3.765042
Oxidoreductase, short-chain
-1
20
5.278909
long-chain acyl-CoA synthetase
-1
20
4.593301
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
-1
20
4.805677
Thermostable hemolysin delta-VPH
1
20
5.471050
hypothetical protein
1
20
5.405046
Outer membrane protein assembly factor YaeT
1
19
5.846321
Outer membrane protein
1
18
4.739587
1
17
5.586836
Lipid A 4'-phosphatase LpxF-like, putative
1
16
5.074899
Sulfatase family protein
1
15
4.601091
DNA-binding response regulator ColR
0
15
4.460394
Two-component system sensor histidine kinase
-1
14
3.783412
SAM-dependent methyltransferase
Y
N
N
2
14
-2.444195
Uncharacterized protease YhbU
1
12
-2.257957
Uncharacterized peptidase U32 family member YhbV
1
11
-2.672614
Putative lipid carrier protein
1
11
-3.485087
FIG00715063: hypothetical protein
3
14
-3.989457
Nitric oxide -responding transcriptional
2
23
-4.338564
Ribonucleotide reductase of class III
1
25
-4.253549
hypothetical protein
2
28
-4.875880
Ribonucleotide reductase of class III
3
29
-5.124025
Polyferredoxin
3
27
-5.167714
High-affinity iron permease
2
23
-3.974907
hypothetical protein
2
23
-4.386806
Periplasmic protein p19 involved in high-affinity
2
23
-4.031023
Uncharacterized MFS-type transporter
2
19
-3.816215
3
18
-3.462709
small multidrug resistance family (SMR) protein
4
17
-2.986605
CBS domain protein
2
21
-3.917454
Nitric-oxide reductase subunit C (EC 1.7.99.7)
3
19
-3.466257
Nitric-oxide reductase subunit B (EC 1.7.99.7)
2
16
-3.259713
Nitric oxide reductase activation protein NorD
Y
N
N
2
20
-3.800648
Sugar fermentation stimulation protein SfsA
1
19
-5.599081
dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133)
2
21
-5.990389
Auxin efflux carrier family protein
3
25
-6.508637
3
32
-6.642893
FIG00784013: hypothetical protein
3
34
-6.513227
putative membrane protein
2
34
-4.790702
Fatty-acid peroxygenase (EC 1.11.2.4)
Y
N
N
2
11
-0.760149
Phosphonate ABC transporter phosphate-binding
1
11
-1.063803
cAMP-binding proteins - catabolite gene activator
0
9
-0.388120
Regulator of competence-specific genes
0
10
0.014475
SAM-dependent methyltransferases
-3
15
2.211808
FIG00955330: hypothetical protein
-2
18
3.208544
Multimodular transpeptidase-transglycosylase (EC
-3
24
3.475496
FIG140336: TPR domain protein
-3
27
3.482549
Uncharacterized protein YqcC
-2
27
2.915931
Periplasmic protein TonB, links inner and outer
-3
20
2.246203
Acetolactate synthase large subunit (EC 2.2.1.6)
-3
16
0.957167
Acetolactate synthase small subunit (EC 2.2.1.6)
-3
14
0.254845
Ketol-acid reductoisomerase (NADP(+)) (EC
-1
15
-1.213023
CDP-diacylglycerol--serine
1
23
-1.898245
Protein-methionine-sulfoxide reductase catalytic
3
32
-2.425738
Protein-methionine-sulfoxide reductase
2
38
-4.287723
repeat region
1
30
-4.128319
SSU rRNA ## 16S rRNA, small subunit ribosomal
3
31
-6.955114
tRNA-Ile-GAT
3
34
-6.275893
tRNA-Ala-TGC
3
35
-6.634025
LSU rRNA ## 23S rRNA, large subunit ribosomal
2
34
-5.754403
5S rRNA ## 5S ribosomal RNA
4
27
-4.467568
Paraquat-inducible protein A
6
28
-4.362628
Paraquat-inducible protein A
6
25
-3.109022
Uncharacterized protein YebT
6
23
-3.475261
Chromosome segregation ATPases
6
23
-3.270026
FIG00961017: hypothetical protein
6
23
-3.471565
FIG00954491: hypothetical protein
5
27
-4.491941
Carboxynorspermidine decarboxylase (EC 4.1.1.96)
3
30
-5.816049
Carboxynorspermidine synthase (EC 1.5.1.43)
5
23
-3.490485
2-isopropylmalate synthase (EC 2.3.3.13)
5
24
-2.301548
Periplasmic protein TonB, links inner and outer
4
23
-3.403128
Ribosomal-protein-S18p-alanine acetyltransferase
4
21
-3.196693
Phosphotransferase system, HPr-related proteins
4
20
-2.975422
Trehalose-6-phosphate phosphatase (EC 3.1.3.12)
4
20
-2.263918
Alpha,alpha-trehalose-phosphate synthase
2
23
-3.372513
Carbonic anhydrase, beta class (EC 4.2.1.1)
1
28
-4.984639
Permease of the drug/metabolite transporter (DMT)
0
27
-4.570781
tRNA-Met-CAT
1
29
-5.420442
Predicted transcriptional regulator LiuR of
0
20
-4.490135
Acetyl-CoA acetyltransferase (EC 2.3.1.9)
0
19
-4.485887
Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
0
16
-4.388075
Methylcrotonyl-CoA carboxylase biotin-containing
0
14
-3.143811
Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
Y
N
N
1
16
-3.157795
2
13
-4.247174
hypothetical protein
2
13
-4.297274
hypothetical protein
-1
15
-3.691160
Chromosome segregation ATPases
-1
17
-3.793520
UDP-glucose 4-epimerase (EC 5.1.3.2)
-1
17
-3.554210
hypothetical protein
1
18
-2.613387
FIG00459097: hypothetical protein
4
20
-1.246365
hypothetical protein
Y
N
N
0
14
3.648698
D-glycerate 2-kinase (EC 2.7.1.165)
-1
13
3.420554
2-hydroxy-3-oxopropionate reductase (EC
-1
14
3.681701
Hydroxypyruvate isomerase (EC 5.3.1.22)
-1
13
3.641041
Glyoxylate carboligase (EC 4.1.1.47)
-1
12
3.813554
Transcriptional regulator, LysR family, in
-2
11
3.332744
5-hydroxyisourate hydrolase (EC 3.5.2.17)
-1
11
2.947634
(Y14336) putative extracellular protein
-1
12
3.586715
DNA-binding heavy metal response regulator
0
12
3.777151
Heavy metal sensor histidine kinase
-1
12
3.642373
Exodeoxyribonuclease III (EC 3.1.11.2)
-1
13
4.373557
EAL domain protein
-1
14
5.016349
Transcriptional regulator, AcrR family
0
13
5.164896
hypothetical protein
0
12
5.039733
Methyl-accepting chemotaxis sensor/transducer
-1
11
4.011003
Nucleoside-binding outer membrane protein
-1
10
3.189597
Putative glutathione-regulated potassium-efflux
-1
11
1.558454
Ca ion P-type ATPase
0
12
0.466631
3
19
-2.652064
FIG137887: membrane protein related to purine
4
20
-3.093339
Ureidoglycolate lyase (EC 4.3.2.3)
2
18
-2.221663
Allantoicase (EC 3.5.3.4)
1
19
-0.957034
2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline
0
16
0.692285
Uricase (urate oxidase) (EC 1.7.3.3)
2
14
2.499463
5-hydroxyisourate hydrolase (EC 3.5.2.17)
1
15
2.085160
Homoserine/homoserine lactone efflux protein
2
13
2.979223
Xanthine/uracil/thiamine/ascorbate permease
2
12
2.938686
2
12
2.684787
Transcriptional regulator, GntR family
1
13
2.099278
-1
14
1.193687
Guanine deaminase (EC 3.5.4.3)
-2
12
1.201798
Xanthine and CO dehydrogenases maturation factor,
-2
15
-0.629594
Xanthine dehydrogenase, molybdenum binding
0
20
-1.096907
Xanthine dehydrogenase iron-sulfur subunit (EC
0
20
-0.587289
2-Oxobutyrate oxidase, putative
1
20
-0.532831
Nucleoside ABC transporter, substrate-binding
2
19
-0.541544
Y
N
N
-2
20
-3.046412
Uncharacterized methyltransferase PA1407
-2
19
-3.437921
-1
17
-3.686242
Hypothetical protein involved in heavy metal
0
16
-3.774620
Transcriptional regulator, AcrR family
0
19
-3.502174
Nucleoside-binding outer membrane protein
-1
20
-3.115447
hypothetical protein
0
15
-2.941531
-2
16
-2.564416
Curli production assembly/transport component
-1
17
-2.554991
Curli production assembly/transport component
0
18
-2.567290
Curli production assembly/transport component
0
16
-2.547066
DNA-binding HTH domain-containing protein
0
15
-2.920982
COG1280: Putative threonine efflux protein
1
21
-3.598386
Oxidoreductase, aldo/keto reductase family
0
22
-3.941999
Oxidoreductase, short-chain
1
24
-2.756402
Transcriptional activator MetR
2
24
-2.761888
5-methyltetrahydropteroyltriglutamate--homocystei
2
25
-2.556914
Aerobic glycerol-3-phosphate dehydrogenase (EC
3
27
-2.293109
Cys-tRNA(Pro) deacylase YbaK
3
24
-3.179844
Membrane-bound lytic murein transglycosylase F
2
23
-3.137313
Endo/excinuclease domain protein
-1
20
-3.429473
Glutathione S-transferase
Y
N
N
3
12
1.093768
GMP synthase [glutamine-hydrolyzing],
4
13
1.133189
Multicopper oxidase
4
15
0.668762
tRNA-specific adenosine-34 deaminase (EC
5
15
0.934025
Ferric iron ABC transporter, ATP-binding protein
4
16
0.726812
Ornithine carbamoyltransferase (EC 2.1.3.3)
4
17
2.582878
Monothiol glutaredoxin GrxD
3
17
2.755530
Bacterioferritin (EC 1.16.3.1)
3
17
3.365788
Bacterioferritin-associated ferredoxin
2
16
3.440030
diguanylate cyclase/phosphodiesterase (GGDEF &
2
16
4.108887
YaeQ protein
3
16
4.282812
Single-stranded-DNA-specific exonuclease RecJ
3
12
4.335584
Formate dehydrogenase-O, major subunit (EC
3
12
4.540746
NADH:flavin oxidoreductases, Old Yellow Enzyme
3
12
4.563041
putative membrane protein
4
12
4.679085
Peptide chain release factor 2 @ programmed
2
14
3.275944
Lysyl-tRNA synthetase (class II) (EC 6.1.1.6)
2
14
2.984698
FIG00953322: hypothetical protein
Y
N
N
2
16
-0.537415
Phenazine biosynthesis protein PhzF like
1
16
-0.072355
FIG00957304: hypothetical protein
2
21
-0.791241
Pirin
2
15
-0.147768
NAD(P)H dehydrogenase (quinone), Type IV (EC
3
15
0.213580
Cytochrome c family protein
3
15
0.102083
Copper resistance protein B
4
16
1.248363
1
13
0.125474
Multicopper oxidase
2
12
0.287885
4-amino-4-deoxy-L-arabinose transferase
Y
N
N
2
19
-1.441493
probable glucosyl transferase
-2
18
-2.480310
HesA/MoeB/ThiF family protein => sulfur transfer
-2
17
-3.424957
Phosphate/pyrophosphate-specific outer membrane
-1
18
-3.507575
FIG110192: hypothetical protein
0
17
-3.898191
Dienelactone hydrolase family protein
0
21
-4.481362
Cytochrome c-type protein NapC
-1
21
-5.002481
Nitrate reductase cytochrome c550-type subunit
-1
27
-6.751643
Periplasmic nitrate reductase (EC 1.7.99.4)
-2
34
-5.883461
Periplasmic nitrate reductase component NapD
-2
35
-5.779070
periplasmic nitrate reductase NapE
-2
34
-5.796846
Uncharacterized MFS-type transporter YnfM
0
35
-5.674454
2
36
-5.408723
2
35
-4.602696
Protein SprT
2
35
-4.903649
FIG00956663: hypothetical protein
-1
32
-5.601134
Inner membrane protein YohC
0
30
-6.055757
heat shock protein DnaJ domain protein
-1
27
-5.739093
tRNA-(cytosine32)-2-thiocytidine synthetase TtcA
-1
22
-5.383175
0
19
-5.339195
2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphat
1
18
-6.263054
DNA-3-methyladenine glycosylase (EC 3.2.2.20)
4
19
-4.008143
hypothetical protein
5
14
-2.312320
FIG00954701: hypothetical protein
4
12
-1.869434
5
11
-1.284316
Cytochrome d ubiquinol oxidase subunit I (EC
4
11
-0.307208
Cytochrome d ubiquinol oxidase subunit II (EC
2
14
2.159790
Cytochrome d ubiquinol oxidase subunit X (EC
2
12
0.194877
Cyd operon protein YbgE
1
10
-0.664496
NLP/P60 family protein
0
9
-1.084640
NLP/P60 family protein
0
13
-2.996819
probable DNA repair exonuclease
1
17
-4.000902
Molybdenum ABC transporter ATP-binding protein
1
21
-4.885982
Molybdenum ABC transporter permease protein ModB
1
25
-5.358916
Molybdenum ABC transporter, substrate-binding
1
27
-5.744368
DNA-binding domain of ModE / Molybdate-binding
2
39
-9.172060
Glutathione peroxidase (EC 1.11.1.9)
1
32
-6.578196
Long-chain fatty acid transport protein
0
32
-6.587315
Thiosulfate sulfurtransferase, rhodanese (EC
1
31
-6.531997
Ribonuclease D (EC 3.1.26.3)
0
28
-5.491954
Protein YcgL
2
30
-4.357532
Y
N
N
2
13
2.422175
Flagellar L-ring protein FlgH
3
11
3.557401
Flagellar P-ring protein FlgI
3
12
3.335233
Flagellar protein FlgJ [peptidoglycan hydrolase]
3
13
3.372362
Flagellar hook-associated protein FlgK
2
13
3.386956
Flagellar hook-associated protein FlgL
1
13
2.869899
O-antigen biosynthesis protein
1
12
3.239534
1
13
2.149870
Flagellin protein FlaA
-1
12
1.784063
0
13
1.479990
Flagellin protein FlaG
0
12
1.315864
Flagellar cap protein FliD
-1
11
1.796039
Flagellar biosynthesis protein FliS
-1
12
0.732844
hypothetical protein
-1
13
1.812816
Protein of unknown function DUF86, SO_3166 group
-2
11
3.525653
Nucleotidyltransferase domain protein, SO_3165
-2
12
4.201929
DUF1232 domain-containing protein
-3
10
3.744613
Transcriptional regulator, Cro/CI family
-2
11
3.847856
FIG00954549: hypothetical protein
-2
10
4.246079
FOG: TPR repeat, SEL1 subfamily
-2
9
3.780574
diguanylate cyclase/phosphodiesterase (GGDEF &
-1
10
3.038532
Periplasmic protease
-2
10
2.149785
Quinone oxidoreductase (EC 1.6.5.5)
-3
9
1.095796
Aspartyl aminopeptidase (EC 3.4.11.21)
-2
8
0.416624
LSU rRNA pseudouridine(746) synthase (EC
-2
8
-0.485397
Cell division topological specificity factor
0
9
-1.430125
Septum site-determining protein MinD
0
9
-2.080614
Septum site-determining protein MinC
1
13
-4.017363
Lipid A biosynthesis lauroyl acyltransferase (EC
1
13
-4.277283
Outer-membrane-phospholipid-binding lipoprotein
1
14
-4.304425
Surface lipoprotein
1
14
-4.204813
beta-(1-3)-glucosyl transferase
2
13
-4.666404
Inner membrane protein YjcH, clustering with
1
12
-3.835676
Acetate permease ActP (cation/acetate symporter)
1
14
-3.441130
Oxidoreductase, short-chain
-1
16
-2.948914
Uncharacterized MFS-type transporter
-2
13
-3.295335
Uncharacterized protein PA3276
Y
N
N
2
23
-1.904867
Signal transduction histidine-protein kinase BarA
2
24
-2.012436
UPF0126 inner membrane protein YicG
2
24
-2.540611
Transcriptional regulator, LysR family
3
24
-2.686286
Cysteine synthase B (EC 2.5.1.47)
3
24
-2.842023
23S rRNA (uracil(1939)-C(5))-methyltransferase
-1
33
-4.569761
Inactive (p)ppGpp 3'-pyrophosphohydrolase domain
0
33
-5.090245
Nucleoside triphosphate pyrophosphohydrolase MazG
-1
34
-4.656907
Nucleoprotein/polynucleotide-associated enzyme
-1
33
-3.347607
FIG00962419: hypothetical protein
-2
31
-3.174525
Protein-L-isoaspartate O-methyltransferase (EC
-2
32
-3.713576
-1
30
-3.377713
FIG006285: ICC-like protein phosphoesterase
Y
N
N
2
13
-2.922887
Aminodeoxychorismate lyase (EC 4.1.3.38)
3
12
-3.200260
Murein endolytic transglycosylase MltG
4
11
-3.641729
Thymidylate kinase (EC 2.7.4.9)
3
11
-3.335013
DNA polymerase III delta prime subunit (EC
3
10
-2.878095
Type IV pilus biogenesis protein PilZ
2
12
-2.062989
Uncharacterized metal-dependent hydrolase YcfH
Y
N
N
-3
27
-4.010384
hypothetical protein
0
24
-4.268550
Glutathione S-transferase (EC 2.5.1.18)
0
24
-4.429363
Uncharacterized conserved protein YfiP, contains
0
23
-4.972554
Inner membrane protein YbaN
0
24
-4.612885
FIG00953416: hypothetical protein
0
23
-4.034445
ATP-dependent DNA helicase RecQ
0
22
-3.596447
Transcriptional regulator SlyA
2
22
-4.181258
putative patatin-like phospholipase
2
22
-4.519359
SelT/selW/selH selenoprotein domain
1
23
-3.828072
Permease of the drug/metabolite transporter (DMT)
0
21
-4.208581
Protein secretion chaperonin CsaA
0
20
-5.318856
Transcriptional regulator, AraC family
0
18
-5.357848
Proteins incorrectly called adenylate cyclase
1
21
-4.007374
hypothetical protein
Y
N
N
1
13
-3.088985
Na(+)-dependent branched-chain amino acid
2
14
-1.932104
FIG00953885: hypothetical protein
3
11
-1.493625
FIG00956080: hypothetical protein
3
12
-1.792993
FIG00953296: hypothetical protein
3
15
-1.878679
Permeases of the major facilitator superfamily
3
15
-2.062522
Chaperone protein HtpG
3
11
-2.130925
FIG00964480: hypothetical protein
3
11
-3.162319
5-oxo-L-prolinase, putative
2
12
-3.516687
Helicase subunit of the DNA excision repair
1
14
-3.699708
Methyl-accepting chemotaxis sensor/transducer
2
22
-4.596228
Methyl-accepting chemotaxis sensor/transducer
1
18
-3.113090
Serine/threonine:Na+ symporter SstT
1
21
-3.424439
3-oxoacyl-[acyl-carrier-protein] synthase, KASI
1
18
-3.291019
3-hydroxyacyl-[acyl-carrier-protein] dehydratase,
2
18
-3.474153
Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC
0
17
-2.417369
Lipase (EC 3.1.1.3)
-1
17
-2.461747
Phosphohistidine phosphatase SixA
0
12
-3.198915
1,4-dihydroxy-2-naphthoyl-CoA hydrolase (EC
-1
12
-2.429324
Predicted hydrolase or acyltransferase PA1621
0
13
-1.857945
Hydrolase, alpha/beta fold family
1
13
-1.631365
Type IIA topoisomerase (DNA gyrase/topo II,
2
12
-2.139372
Uncharacterized UPF0118 membrane protein
1
10
-1.480651
FIG00613342: Bacterial patatin-like phospholipase
2
9
-1.314898
Selenide,water dikinase (EC 2.7.9.3)
1
18
-1.998126
Selenophosphate-dependent tRNA 2-selenouridine
0
23
-3.093854
putative lipoprotein
0
25
-3.187342
FIG022979: MoxR-like ATPases
-3
21
-3.547293
FIG002343: hypothetical protein
Y
N
N
2
14
-0.624383
Para-aminobenzoate synthase, aminase component
1
11
-0.761941
FIG002781: Alpha-L-glutamate ligase family
1
12
0.054691
FIG139976: hypothetical protein
0
12
2.295432
FIG008443: hypothetical protein
2
13
2.790006
Propionate catabolism operon transcriptional
1
14
3.114138
Methylisocitrate lyase (EC 4.1.3.30)
2
14
2.768463
2-methylcitrate synthase (EC 2.3.3.5)
1
14
3.122555
2-methylcitrate dehydratase
2
13
3.333341
2-methylaconitate isomerase
2
10
1.386080
Phosphoenolpyruvate synthase regulatory protein
3
9
1.300442
Phosphoenolpyruvate synthase (EC 2.7.9.2)
Y
N
N
0
11
-3.492406
Enoyl-[acyl-carrier-protein] reductase [NADH] (EC
1
13
-3.828553
ABC transporter, ATP-binding protein (cluster 5,
1
14
-3.869093
ABC transporter, permease protein 2 PA1808
2
16
-3.675543
ABC transporter premease protein PA1809
2
14
-3.753412
ABC transporter periplasmic substrate-binding
2
21
-1.393850
ABC transporter periplasmic substrate-binding
Y
N
N
-2
18
-3.126417
-2
20
-3.947776
-1
20
-4.275497
Putative drug efflux protein
-2
20
-5.530313
hypothetical protein
-1
19
-5.616991
0
19
-5.652270
tRNA-Leu-TAA
0
19
-5.940905
DinG family ATP-dependent helicase CPE1197
0
19
-6.080467
Hypothetical protein, restriction
1
20
-6.317598
Coproporphyrinogen III oxidase,
2
22
-5.785557
Methyl-accepting chemotaxis sensor/transducer
1
19
-5.625497
UTP--glucose-1-phosphate uridylyltransferase (EC
1
19
-5.341373
Glyoxalase/bleomycin resistance
0
17
-4.451150
Glutathione reductase (EC 1.8.1.7)
-1
15
-3.842753
Copper metallochaperone PCu(A)C, inserts Cu(I)
-1
17
-3.628684
-1
18
-3.290194
Alpha-amylase (EC 3.2.1.1)
Y
N
N
-2
15
-3.025075
Cell division inhibitor Slr1223 (YfcH in EC),
-1
14
-3.256940
0
14
-3.996551
COG1683: Uncharacterized conserved protein /
-1
17
-4.365097
Transcriptional regulator, MerR family,
-1
20
-5.422765
Deoxyribodipyrimidine photolyase (EC 4.1.99.3)
0
24
-5.988957
FIG002994: Putative transcriptional regulator
1
24
-6.672277
Oxidoreductase, short-chain
1
17
-5.990915
Amine oxidase, flavin-containing
1
18
-5.738275
FIG001571: Hypothetical protein
2
18
-5.538066
S-adenosyl-L-methionine dependent
1
17
-4.741942
Methyl-accepting chemotaxis protein
1
15
-4.462200
Nitrite reductase [NAD(P)H] large subunit (EC
0
16
-4.048089
Nitrite reductase [NAD(P)H] small subunit (EC
0
21
-3.874692
Nitrite transporter from formate/nitrite family
0
21
-3.805834
Nitrite transporter-associated serine/threonine
-1
22
-3.739167
Cytochrome c551/c552
0
17
-3.945624
Coproporphyrinogen III oxidase,
-1
21
-4.680227
NAD-dependent protein deacetylase of SIR2 family
0
22
-5.347938
Putative helicase
0
23
-5.366441
hypothetical protein
0
20
-5.563600
Acyl carrier protein
0
20
-5.460387
Polyketide synthase modules and related proteins
0
22
-5.546456
Probable poly(beta-D-mannuronate) O-acetylase (EC
0
17
-4.959882
hypothetical protein
0
23
-5.712351
Membrane carboxypeptidase (penicillin-binding
1
25
-6.144837
hypothetical protein
1
27
-6.293166
Transcriptional regulator, LysR family
2
27
-6.379326
Methylmalonate-semialdehyde dehydrogenase (EC
3
31
-6.598659
Enoyl-CoA hydratase (EC 4.2.1.17) => degradation
4
35
-7.075287
3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
4
31
-6.763264
3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
4
24
-5.828216
Acyl-CoA dehydrogenase (EC 1.3.8.1) =>
4
24
-5.727414
hypothetical protein
2
27
-5.953337
DNA topoisomerase III (EC 5.99.1.2)
2
26
-5.598261
Alpha-methylacyl-CoA racemase (EC 5.1.99.4)
2
26
-5.072869
3-methylmercaptopropionyl-CoA ligase (EC
1
23
-4.329361
Acyl-CoA dehydrogenase, short-chain specific (EC
2
34
-5.219786
3-ketoacyl-CoA thiolase (EC 2.3.1.16) @
0
40
-7.318540
3-hydroxyacyl-CoA dehydrogenase
1
39
-7.590828
Transcriptional regulator, AraC family
0
37
-7.227799
probable membrane protein YPO3302
0
28
-5.364599
0
30
-5.675355
Two-component system sensor histidine kinase
2
31
-6.440047
2
21
-3.566015
2
21
-2.747044
3
22
-3.214077
2
35
-6.696972
2
33
-7.022736
2
38
-7.285802
hypothetical protein
1
39
-7.166465
Glutathione S-transferase, omega (EC 2.5.1.18)
0
33
-6.330676
Anthranilate phosphoribosyltransferase-like
0
31
-6.691411
tRNA 2-thiouridine synthesis protein TusE
-1
21
-4.805729
tRNA 5-methylaminomethyl-2-thiouridine synthase
-1
20
-4.360092
tRNA 5-methylaminomethyl-2-thiouridine synthase
-2
11
-2.192574
tRNA 5-methylaminomethyl-2-thiouridine synthase
-1
12
-2.908582
Putative TEGT family carrier/transport protein
0
14
-2.990029
tRNA-Ser-TGA
-1
14
-2.397172
Precorrin-2 oxidase (EC 1.3.1.76) @
2
16
-2.896959
Seryl-tRNA synthetase (EC 6.1.1.11)
0
13
-3.487901
Fluoride ion transporter CrcB
-3
12
-1.919601
Replication-associated recombination protein
-3
12
-2.059315
Outer membrane lipoprotein carrier protein LolA
-1
13
-2.135412
DNA translocase FtsK
-1
14
-1.486891
Thioredoxin reductase (EC 1.8.1.9)
-1
14
-1.625721
Leucyl/phenylalanyl-tRNA--protein transferase (EC
-2
15
-2.340972
Arginyl-tRNA--protein transferase (EC 2.3.2.8)
0
18
-4.332056
Translation initiation factor 1
0
19
-4.522078
ATP-dependent Clp protease ATP-binding subunit
0
19
-4.540947
ATP-dependent Clp protease adaptor protein ClpS
2
22
-5.452229
Cold shock protein of CSP family => CspD (naming
4
28
-7.642989
Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
3
25
-5.555765
Isocitrate dehydrogenase [NADP] (EC 1.1.1.42);
2
18
-4.496657
Nudix-like NDP and NTP phosphohydrolase NudJ
Y
N
N
2
9
0.614200
Outer-membrane-phospholipid-binding lipoprotein
3
11
0.550571
Chromosome segregation ATPases
2
12
2.748862
NADPH-dependent 7-cyano-7-deazaguanine reductase
0
13
3.737930
Uncharacterized efflux ABC transporter, permease
1
16
3.923525
Uncharacterized efflux ABC transporter, permease
0
17
4.032201
Uncharacterized efflux ABC transporter,
-1
17
5.029911
Acyl-CoA dehydrogenase
0
16
5.261916
FIG00956241: hypothetical protein
1
15
5.189657
Integration host factor beta subunit
1
14
4.629647
L-carnitine dehydratase/bile acid-inducible
1
9
4.758942
repeat region
0
8
4.246375
FIG00966635: hypothetical protein
0
9
3.714397
Transposase
-1
10
3.396195
Mobile element protein
-1
9
2.781096
hypothetical protein
0
13
1.863288
Pyruvate:Oxaloacetate transcarboxylase domain
0
10
1.191487
Pyruvate:Oxaloacetate transcarboxylase domain
0
12
1.471902
hypothetical protein
2
11
3.133047
Epoxide hydrolase (EC 3.3.2.9)
2
11
3.758917
TRAP-type C4-dicarboxylate transport system,
3
13
4.211220
Similar to citrate lyase beta chain, 3
3
14
4.145846
L-carnitine dehydratase/bile acid-inducible
5
13
5.640067
MmgE/PrpD family protein
3
13
5.314125
Putative ring-cleaving dioxygenase
2
11
4.191285
Acyl-CoA dehydrogenase STM0857
1
11
3.780162
COGs COG3777
2
11
3.584185
Transcriptional regulator PA0877, LysR family
1
11
3.230812
0
19
-0.341513
hypothetical protein
2
27
-3.181109
Uncharacterized MFS-type transporter
3
39
-8.176115
Peptidyl-tRNA hydrolase ArfB (EC 3.1.1.29)
2
39
-6.909993
Membrane-bound metal-dependent hydrolase
2
38
-6.975877
Uncharacterized amino acid permease MSMEG_6727,
2
38
-7.010717
Methyl-accepting chemotaxis sensor/transducer
1
36
-7.152811
Efflux ABC transporter, permease/ATP-binding
2
37
-7.298707
Thioredoxin
0
34
-7.332674
Rhodanese domain protein UPF0176
0
31
-7.386966
Cell division protein BolA
0
32
-6.322323
FIG00954136: hypothetical protein
-1
31
-6.414464
Fumarate hydratase class II (EC 4.2.1.2)
-1
31
-6.180121
3-ketoacyl-CoA thiolase (EC 2.3.1.16) @
-2
29
-6.313798
UDP-galactose-lipid carrier transferase (EC
-1
31
-5.306668
1
31
-5.845184
4'-phosphopantetheinyl transferase entD (EC
0
28
-7.223124
Two-component system sensor histidine kinase
1
31
-7.815747
Two-component transcriptional response regulator,
2
30
-7.714806
Ribonucleotide reductase of class Ia (aerobic),
0
34
-7.065501
1
31
-7.443223
Ribonucleotide reductase of class Ia (aerobic),
0
25
-6.029843
-1
22
-4.758515
hypothetical protein Pfl_5213
-1
20
-3.289309
Transposase and inactivated derivatives
Y
N
N
0
12
3.921572
Ferrichrome-iron receptor
0
11
4.154150
hypothetical protein
0
11
3.756400
Putative sterol carrier protein
-1
10
3.724061
Phosphoglycerate mutase family protein
-1
11
3.741920
Peptidase, U7 family
-1
11
3.499164
Acryloyl-CoA reductase AcuI/YhdH (EC 1.3.1.84)
-1
11
3.471407
Histidine kinase/response regulator hybrid
-1
10
3.690692
Putative SigmaB asociated two-component system
-1
9
4.133651
Phosphoserine phosphatase rsbX (EC 3.1.3.3)
-1
9
4.085086
Anti-sigma B factor RsbT
-2
8
3.657282
RsbS, negative regulator of sigma-B
Y
N
N
0
16
3.538476
NADH-ubiquinone oxidoreductase chain G (EC
0
17
3.260649
NADH-ubiquinone oxidoreductase chain H (EC
0
18
3.295034
NADH-ubiquinone oxidoreductase chain I (EC
2
19
3.350369
NADH-ubiquinone oxidoreductase chain J (EC
2
19
3.459743
NADH-ubiquinone oxidoreductase chain K (EC
3
17
3.380949
NADH-ubiquinone oxidoreductase chain L (EC
1
17
3.425259
NADH-ubiquinone oxidoreductase chain M (EC
1
16
3.657119
NADH-ubiquinone oxidoreductase chain N (EC
Y
N
N
-1
9
3.101422
Polysaccharide biosynthesis protein
1
11
3.246962
putative glycosyltransferase - possibly involved
1
11
2.591651
Tyrosine-protein kinase (EC 2.7.10.2)
1
11
2.241523
FIG00904907: hypothetical protein
1
12
1.855601
Transcriptional activator RfaH
2
13
1.283580
Glycosyl transferase, group 1 family protein
1
13
0.272755
membrane protein, putative
0
14
-0.276764
1
15
-0.312144
Glycosyl transferase, group 1
0
18
-0.149050
Glycosyltransferase
2
24
-1.647084
hypothetical protein
2
22
-1.751269
5
20
-2.306213
Glycosyl transferase, group 2 family protein
4
19
-2.494987
hypothetical protein
2
19
-2.613757
Flp pilus assembly protein TadD, contains TPR
3
16
-2.675821
Type II/IV secretion system protein TadC,
Y
N
N
3
16
-1.594049
Succinylornithine transaminase (EC 2.6.1.81)
4
15
-1.178457
Enoyl-CoA hydratase/isomerase family protein
5
17
-1.464771
6
14
-2.076659
tRNA-Ser-GGA
5
13
-1.998006
2
10
-0.175558
LrgA-associated membrane protein LrgB
0
8
0.386452
Antiholin-like protein LrgA
0
9
0.651001
Type cbb3 cytochrome oxidase biogenesis protein
0
8
0.275473
DNA-binding transcriptional regulator, MocR
2
10
1.092624
1
10
1.960665
4
13
1.048225
3
11
0.760186
Putative inner membrane protein
2
12
0.488995
Acetyl-CoA synthetase (EC 6.2.1.1)
2
12
0.597524
hypothetical protein
2
11
0.697068
DEAD-box ATP-dependent RNA helicase DeaD (= CshA)
Y
N
N
3
18
-3.905435
Oxidoreductase, short-chain
3
20
-4.618848
Putative NADP-dependent oxidoreductase PA1648
1
21
-3.945225
Orotidine 5'-phosphate decarboxylase (EC
1
22
-3.535555
Methylenetetrahydrofolate dehydrogenase (NADP+)
1
22
-3.570794
diguanylate cyclase/phosphodiesterase (GGDEF &
1
21
-3.405084
1
25
-2.633626
DNA-binding transcriptional regulator, MocR
1
21
-2.981056
OmpA family protein
2
18
-4.011590
3
15
-4.387622
Extracellular solute-binding protein, family 3
1
13
-4.043408
repeat region
0
12
-3.982752
Electron transfer flavoprotein, alpha subunit
0
13
-4.073923
Electron transfer flavoprotein, beta subunit
0
10
-3.700432
Electron transfer flavoprotein-ubiquinone
Y
N
N
2
12
2.754089
NADH:flavin oxidoreductases, Old Yellow Enzyme
2
12
5.416272
S-formylglutathione hydrolase (EC 3.1.2.12)
2
12
5.328994
S-(hydroxymethyl)glutathione dehydrogenase (EC
1
13
5.546159
Transcriptional regulator, LysR family, in
1
13
5.652387
ribosomal subunit interface protein, putative
1
13
5.220513
hypothetical protein
-1
13
5.036135
2-C-methyl-D-erythritol 4-phosphate
-2
14
3.079820
Cell division protein DivIC (FtsB), stabilizes
-2
14
3.145063
Enolase (EC 4.2.1.11)
Y
N
N
0
21
-3.113203
Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam
0
25
-2.983269
3-hydroxyacyl-[acyl-carrier-protein] dehydratase,
0
26
-3.142179
UDP-3-O-[3-hydroxymyristoyl] glucosamine
1
29
-4.061203
Periplasmic chaperone of outer membrane proteins
1
32
-4.786815
Outer membrane protein assembly factor YaeT
5
30
-5.416035
Intramembrane protease RasP/YluC, implicated in
0
19
-4.178750
1-deoxy-D-xylulose 5-phosphate reductoisomerase
-1
6
-2.208552
Phosphatidate cytidylyltransferase (EC 2.7.7.41)
-2
8
0.046200
Undecaprenyl diphosphate synthase (EC 2.5.1.31)
1
9
1.415640
Ribosome recycling factor
-1
9
0.260152
Uridylate kinase (EC 2.7.4.22)
0
9
0.553104
Translation elongation factor Ts
0
10
1.036530
SSU ribosomal protein S2p (SAe)
0
12
1.012943
Methionine aminopeptidase (EC 3.4.11.18)
2
12
-0.482941
[Protein-PII] uridylyltransferase (EC 2.7.7.59) /
1
11
-0.681496
Na(+) H(+) antiporter subunit G
2
12
1.358271
Na(+) H(+) antiporter subunit F
Y
N
N
0
13
3.024089
Two-component transcriptional response regulator,
1
13
3.260912
Permease of the drug/metabolite transporter (DMT)
3
12
4.011927
Uncharacterized conserved protein YfiP, contains
3
12
3.839425
Putative NADPH-quinone reductase (modulator of
7
11
4.393656
Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)
7
13
4.254510
Metallo-beta-lactamase family protein,
4
14
4.924241
Decarboxylase family protein
4
15
4.797611
Regulatory protein RecX
2
20
4.543601
RecA protein
1
20
4.116955
Nicotinamide-nucleotide amidase (EC 3.5.1.42)
0
18
4.371235
Putative diheme cytochrome c-553
-2
15
3.242694
Cytochrome c family protein
Y
N
N
-2
15
3.588071
tRNA-Thr-CGT
-2
14
3.339352
-2
14
3.478896
0
14
4.442480
hypothetical protein
3
14
4.524679
hypothetical protein
4
14
5.059140
Uncharacterized protein RSP_3230
7
18
4.200750
protein of unknown function DUF1130
7
19
4.627832
FIG00953341: hypothetical protein
3
17
2.762885
Glucose dehydrogenase, PQQ-dependent (EC
2
17
2.290074
Soluble aldose sugar dehydrogenase, PQQ-dependent
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Sachin Pundhir
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