PredictBias

identification of genomic and pathogenicity islands in prokaryotic genome
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A) Input parameters
GenomeKBase_derived_genome_PKUVDGCK.gbffThreshold dinucleotide bias2
Threshold codon bias4Threshold %GC bias3
E-value (RPSBlast)0.05Genome (non-pathogenic)
 
B) Compare a potential GI or PAI in related non-pathogenic sp. (phylogenetic tree)
Potential GI or PAI start    end  
Select Organism     
 
C) Potential GIs and PAIs in scaffold00000001 (download)
S.NoStartEndBiasVirulenceInsertion elementsPrediction
YNN
1113.099216Cell-division-associated, ABC-transporter-like
0112.821793Signal recognition particle receptor FtsY
0133.021978
0153.537527FIG015547: peptidase, M16 family
0143.911481FIG015287: Zinc protease
-1143.31780316S rRNA (guanine(966)-N(2))-methyltransferase
-2152.728063hypothetical protein
-2144.069871Hydrolase, alpha/beta fold family functionally
0113.669973Transcriptional regulator, AcrR family
-1113.245923Aldehyde dehydrogenase (EC 1.2.1.3); Probable
1123.168979FIG028932: hypothetical protein
2132.842125FIG022869: Oxidoreductase, GMC family
2143.311496Phosphopantetheine adenylyltransferase (EC
2141.636274Uncharacterized ferredoxin-like protein YfhL
2171.577710Gamma-glutamyltranspeptidase (EC 2.3.2.2) @
1191.583598Sodium-dependent phosphate transporter
2201.120740Cation/multidrug efflux pump
0192.153045Formamidopyrimidine-DNA glycosylase (EC
0182.051034Predicted signal transduction protein
1192.188963Intracellular protease
0192.56983423S rRNA (cytosine(1962)-C(5))-methyltransferase
1163.146889
1153.767744Dihydroxy-acid dehydratase (EC 4.2.1.9)
0133.033481Xanthine permease
0133.2941783'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7)
1163.254977ADP compounds hydrolase NudE
1163.259409GMP/IMP nucleotidase YrfG
YNN
-2153.402382
-2162.829674TRAP dicarboxylate transporter, DctQ subunit,
-2172.884190TRAP dicarboxylate transporter, DctM subunit,
-1163.806690SAM-dependent methyltransferase
-1163.374561tRNA-Thr-TGT
-2174.168584DedA family; putative alkaline phosphatase-like
-1173.959689Uncharacterized outer membrane protein YaiW
-1174.590082
0185.043565D-beta-hydroxybutyrate permease
1184.0162753-hydroxybutyrate dehydrogenase (EC 1.1.1.30)
-1194.012170Succinyl-CoA:3-ketoacid-coenzyme A transferase
1183.822570Succinyl-CoA:3-ketoacid-coenzyme A transferase
2203.697867Glycogen phosphorylase (EC 2.4.1.1)
3182.924236
1172.990119Putative oxidoreductase YncB
1163.142868Alcohol dehydrogenase (EC 1.1.1.1)
2153.889780Hypothetical protein VC0266 (sugar utilization
2153.967690putative lipoprotein
0154.029651FIG00953722: hypothetical protein
-1154.006615N5-carboxyaminoimidazole ribonucleotide synthase
1153.982088N5-carboxyaminoimidazole ribonucleotide mutase
0154.660101Response regulator c-di-GMP phosphodiesterase,
1144.106883Two-component system sensor histidine kinase
1134.0141834-hydroxyphenylpyruvate dioxygenase (EC
0133.5669654-hydroxyphenylpyruvate dioxygenase (EC
1143.542376hypothetical protein
1144.041196LysR-family transcriptional regulator PA5428
YNN
1133.919858Diaminobutyrate--2-oxoglutarate transaminase (EC
1134.511679L-ectoine synthase (EC 4.2.1.108)
5146.180077Ectoine hydroxylase
1145.419817Aspartokinase (EC 2.7.2.4) associated with
1174.889835hypothetical protein
1174.247046Uncharacterized protease YegQ
0183.370380General secretion pathway protein M
0173.375701General secretion pathway protein L
1152.620983General secretion pathway protein K
3172.238987General secretion pathway protein J
3141.887063General secretion pathway protein I
1121.946682General secretion pathway protein H
1132.359622General secretion pathway protein G
1142.005347General secretion pathway protein F
1122.153688General secretion pathway protein E
2143.147613
2172.576941NAD(P) transhydrogenase N-domain of subunit alpha
2220.244321NAD(P) transhydrogenase C-domain of subunit alpha
324-0.538726NAD(P) transhydrogenase subunit beta (EC
627-2.697104Transcriptional regulator YeiE, LysR family
628-3.053118UPF0324 inner membrane protein YeiH
529-3.840483FIG00961396: hypothetical protein
527-4.386732
324-3.159198Holliday junction resolvasome, helicase subunit
222-2.201003FIG00953248: hypothetical protein
YNN
112-3.133018Lysophospholipase (EC 3.1.1.5)
113-3.760825Ribonucleotide reductase of class II (coenzyme
113-3.704768Ribonucleotide reductase of class II (coenzyme
219-4.952590Pyrimidine/purine nucleotide 5'-monophosphate
125-5.966289Homoserine kinase (EC 2.7.1.39)
-114-1.796609FIG00953549: hypothetical protein
2142.163754DNA polymerase I (EC 2.7.7.7)
1142.440701VgrG protein
2162.452650
YNN
0123.112164Catalase KatE-intracellular protease (EC
0123.910574Methionine ABC transporter ATP-binding protein
-1123.939794Methionine ABC transporter permease protein
1135.244580Methionine ABC transporter substrate-binding
2123.914591Malonate utilization transcriptional regulator
0133.362178D-amino acid dehydrogenase (EC 1.4.99.6)
0153.135600Malonate transporter, MadM subunit
0163.019491Malonate transporter, MadL subunit
0173.123991Malonyl CoA-acyl carrier protein transacylase (EC
0202.464294Malonate decarboxylase
1203.610285Malonate decarboxylase gamma subunit
1184.195151Malonate decarboxylase beta subunit
3164.483473Malonate decarboxylase delta subunit
1174.347859Triphosphoribosyl-dephospho-CoA synthase (EC
1155.113240Malonate decarboxylase alpha subunit
1155.249957MFS-type efflux pump ArsJ specific for
2155.403879NAD-dependent glyceraldehyde-3-phosphate
-1165.479351UPF0060 membrane protein YnfA
-1164.099959Arsenic resistance protein ArsH
-1162.728708Arsenical resistance operon repressor
0172.169252hypothetical protein
0171.238667Uncharacterized membrane protein, YraQ family
0150.649372
0141.446522Oxidoreductase
1121.908985PhnH protein
3132.213058Ribose 1,5-bisphosphate phosphokinase PhnN (EC
YNN
222-1.266957FIG00957502: hypothetical protein
324-1.257525FIG00956226: hypothetical protein
426-1.106032Phytochrome, two-component sensor histidine
219-0.794824Response regulator
2200.078386PAS/PAC sensor hybrid histidine kinase
0140.258852hypothetical protein
0130.468670Peptidase S1, chymotrypsin:PDZ/DHR/GLGF domain
2120.176268Peptidase, M48 family
213-0.361063FIG00799023: hypothetical protein
YNN
319-1.762133phospholipase D/Transphosphatidylase
319-2.344039FIG00962753: hypothetical protein
525-3.967989Mobile element protein
426-4.424964
123-5.072710Glutamine--fructose-6-phosphate aminotransferase
123-4.991579Transcriptional regulator of glmS gene, DeoR
022-4.703358N-acetylglucosamine-1-phosphate uridyltransferase
-220-3.823950ATP synthase epsilon chain (EC 3.6.3.14)
-317-3.226431ATP synthase beta chain (EC 3.6.3.14)
-213-2.457981ATP synthase gamma chain (EC 3.6.3.14)
-213-1.329488ATP synthase alpha chain (EC 3.6.3.14)
-211-1.775732ATP synthase delta chain (EC 3.6.3.14)
-111-2.130968ATP synthase F0 sector subunit b (EC 3.6.3.14)
-213-2.476633ATP synthase F0 sector subunit c (EC 3.6.3.14)
-114-2.575735ATP synthase F0 sector subunit a (EC 3.6.3.14)
019-4.232621ATP synthase protein I
120-5.466209Chromosome (plasmid) partitioning protein ParB
130-5.855349Chromosome (plasmid) partitioning protein ParA
223-5.80503616S rRNA (guanine(527)-N(7))-methyltransferase
216-4.377088tRNA-5-carboxymethylaminomethyl-2-thiouridine(34)
115-4.317091tRNA-5-carboxymethylaminomethyl-2-thiouridine(34)
010-3.427679Inner membrane protein translocase and chaperone
09-3.002396Membrane protein insertion efficiency factor
-19-1.647784Ribonuclease P protein component (EC 3.1.26.5)
-2120.497010LSU ribosomal protein L34p
-1110.362359Chromosomal replication initiator protein DnaA
-1142.226588DNA polymerase III beta subunit (EC 2.7.7.7)
0152.651921DNA recombination and repair protein RecF
2134.726626DNA gyrase subunit B (EC 5.99.1.3)
-1154.076407Alkyl hydroperoxide reductase protein F
0163.187146repeat region
-1173.006146Mobile element protein
0172.010575hypothetical protein, INTERPRO-suggestion:
0141.898332FIG01089058: hypothetical protein
-1151.437253PUTATIVE ZINC PROTEASE PROTEIN
2110.998219
2190.485626putative lipoprotein
0140.301287Luciferase-like monooxygenase YhbW
-115-0.284414Protein YrdA
-115-0.035728Transcriptional regulator, AraC family
-116-0.956946Sodium/bile acid symporter family
119-1.131983Oligopeptidase A (EC 3.4.24.70)
018-0.395388Uncharacterized protein PA0068
0180.332214hypothetical protein
2152.999098
3142.804711Radical SAM domain protein
2153.975603
3154.340106
5124.241137Cytochrome c oxidase polypeptide II (EC 1.9.3.1)
3114.382412Cytochrome c oxidase polypeptide I (EC 1.9.3.1)
1133.933164Cytochrome oxidase biogenesis protein Cox11-CtaG,
1134.162228Cytochrome c oxidase polypeptide III (EC
1144.100677hypothetical protein
0163.595634Cytochrome oxidase biogenesis protein Surf1,
0154.409753Hypothetical protein in cytochrome oxidase
0183.814454Heme A synthase, cytochrome oxidase biogenesis
1212.889571Heme O synthase, protoheme IX
2203.393500Cytochrome oxidase biogenesis protein
2213.576021hypothetical protein
2194.687889hypothetical protein
2204.527096HemK family modification methylase PA2179
3185.477948hypothetical protein
3185.930133
1175.043433
0164.810393Flagellar P-ring protein FlgI
0164.256862Soluble lytic murein transglycosylase precursor
0174.105230Flagellar hook-associated protein FlgK
0173.250362Flagellar hook-associated protein FlgL
2182.517162
2182.614483hypothetical protein
1182.8628886-phosphogluconolactonase (EC 3.1.1.31)
1172.847028Acyl-CoA dehydrogenase (EC 1.3.8.1),
2162.447525Sensory box histidine kinase/response regulator
1142.681179putative iron-regulated membrane protein
-2152.949347Ferrichrome-iron receptor
-2163.024188Dodecin, a flavin storage/sequestration protein
YNN
623-3.184209Transcriptional regulator, LysR family
724-3.281435Tryptophan synthase beta chain (EC 4.2.1.20)
832-3.773155Tryptophan synthase alpha chain (EC 4.2.1.20)
827-2.939227FIG00958400: hypothetical protein
621-2.303136hypothetical protein
621-2.347682Toxin HigB / Protein kinase domain of HipA
-2133.594694
-1173.781581Glutathione S-transferase (EC 2.5.1.18)
-1183.298886
-2182.913092
-2172.309141hypothetical protein
-1172.849553
1122.607599
3122.271855hypothetical protein
4102.939070Uncharacterized MFS-type transporter YtbD
2102.465350Transcriptional regulator PA1859, LysR family
192.594261
292.489948Phosphoglucomutase (EC 5.4.2.2)
YNN
1185.111998Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14)
0194.577992Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)
0174.447262Histidinol-phosphatase (EC 3.1.3.15)
1164.806526Acyl-CoA:1-acyl-sn-glycerol-3-phosphate
1163.824014Diguanylate cyclase (EC 2.7.7.65) =>
1163.138958repeat region
YNN
2174.087503diguanylate cyclase/phosphodiesterase (GGDEF &
3154.573383ATP-dependent DNA helicase UvrD/PcrA (EC
2174.711917TRAP transporter solute receptor, unknown
1194.331655putative membrane protein
1174.110209hypothetical protein
-1203.130315Formate dehydrogenase O alpha subunit (EC
0213.792176Formate dehydrogenase O alpha subunit (EC
-1183.330978Formate dehydrogenase O beta subunit (EC
-1183.419842Formate dehydrogenase O gamma subunit (EC
-2163.631282Formate dehydrogenase formation protein FdhE
-2153.282420L-seryl-tRNA(Sec) selenium transferase (EC
-2152.613220Selenocysteine-specific translation elongation
-3132.141110Urea carboxylase-related ABC transporter,
-2152.996879Urea carboxylase-related ABC transporter,
-1143.903860Urea carboxylase-related aminomethyltransferase
0154.108614Urea carboxylase-related aminomethyltransferase
2164.956068
4156.706013Urea carboxylase (EC 6.3.4.6)
4156.259056Allophanate hydrolase (EC 3.5.1.54)
4165.540149Potassium efflux system KefA protein /
1155.207007
-1153.976233oxidoreductase, aldo/keto reductase family
-2173.290288Urea carboxylase-related ABC transporter,
YNN
1133.110907Homoserine O-acetyltransferase (EC 2.3.1.31)
1123.000433Glutamine synthetase type III (EC 6.3.1.2)
2123.452518Urea carboxylase-related ABC transporter,
2123.768329Transcriptional regulator, AcrR family
-2123.370871Similar to Glycine cleavage system H protein
-1123.776342putative protein
-2113.357583Cyclopropane-fatty-acyl-phospholipid synthase (EC
YNN
-1123.340464hypothetical protein
-1123.574778Enoyl-CoA hydratase (EC 4.2.1.17) /
1134.256975Acyl-CoA dehydrogenase, long-chain specific (EC
1134.526571Acyl-CoA dehydrogenase family protein
2134.843448FIG00962026: hypothetical protein
1143.976929Transcriptional regulator, AcrR family
2133.307155Transcriptional regulator, IclR family
2123.136725LSU ribosomal protein L28p @ LSU ribosomal
1113.133427LSU ribosomal protein L33p @ LSU ribosomal
YNN
-1153.303419
-1153.097235Alginate biosynthesis two-component system sensor
-1133.049661Alginate biosynthesis two-component system
1143.986188hypothetical protein
0133.723346
-1141.310617UPF0391 membrane protein YtjA
-1120.701460Gate supefamily SpmA/SpmB domains protein
-1101.275839
-1111.370834Ammonia monooxygenase
-3110.811105Tripartite tricarboxylate transporter TctA
-1112.943647Tripartite tricarboxylate transporter TctB
0104.178946Tripartite tricarboxylate transporter TctC
1115.240359Outer membrane low permeability porin, OprD
2115.572409Tricarboxylate transport transcriptional
3115.927156Tricarboxylate transport sensor protein TctE
2125.556682Aerotaxis sensor receptor protein
2124.915532
1123.346321
-1141.300226repeat region
-2141.224861Aerotaxis sensor receptor protein
-1140.311190
0170.038074TRAP transporter solute receptor, TAXI family
-1160.519424TRAP-type uncharacterized transport system, fused
-1151.455232Sodium-dependent phosphate transporter
0122.686307conserved hypothetical secreted protein
3103.961448
4104.576159Exodeoxyribonuclease V gamma chain (EC 3.1.11.5)
384.124589Exodeoxyribonuclease V beta chain (EC 3.1.11.5)
283.980328Exodeoxyribonuclease V alpha chain (EC 3.1.11.5)
1103.349976hypothetical protein
YNY
224-1.306535Ubiquinone biosynthesis protein UbiJ
117-1.8017672-methoxy-6-polyprenyl-1,4-benzoquinol methylase
115-4.526154FIG00954300: hypothetical protein
017-5.127365FIG00899427: hypothetical protein
432-9.370728ATP-dependent hsl protease ATP-binding subunit
858-15.155298ATP-dependent protease subunit HslV (EC
536-9.309832tRNA (cytidine(34)-2'-O)-methyltransferase (EC
432-8.725756
323-5.411509Nitrogen regulation protein NR(I), GlnG (=NtrC)
322-3.662900Nitrogen regulation protein NtrB (EC 2.7.13.3)
-114-0.795228FIG00953806: hypothetical protein
-1132.891004FIG00956533: hypothetical protein
0144.388379
1135.003147Glutamine synthetase type I (EC 6.3.1.2)
2134.404104tRNA 4-thiouridine synthase (EC 2.8.1.4) /
2153.548498GTP-binding protein TypA/BipA
2163.690268GTP-binding protein TypA/BipA
1174.214152Integron integrase IntI4
1193.710021
0203.387987
0203.922826hypothetical protein
1214.037194
4214.504637diguanylate cyclase/phosphodiesterase (GGDEF &
7214.907535Predicted polyamine sensor NspS, involved in
8215.112764Assimilatory nitrate reductase large subunit
14207.024824Heterodisulfide reductase, cytochrome reductase
11195.695208hypothetical protein
13186.254797hypothetical protein
10185.121296
9164.596713Lactoylglutathione lyase (EC 4.4.1.5)
9154.656616
7153.900512hypothetical protein
6144.640827Glucose-methanol-choline (GMC) oxidoreductase:NAD
1143.640124anion-transporting ATPase
-1133.287034FIG059250: hypothetical protein
YNN
0143.003957
0143.370129Glycolate dehydrogenase (EC 1.1.99.14),
-1103.713384Hypothetical protein GlcG in glycolate
-2102.882351Malate synthase G (EC 2.3.3.9)
-293.167875L-lactate permease
-292.491449Rubredoxin
-1121.907575Rubredoxin-NAD(+) reductase (EC 1.18.1.1)
424-0.615134DNA-binding protein HU
730-1.832125Superfamily II DNA and RNA helicases
728-1.211553Transcriptional regulator, LysR family
421-1.363895Glutaryl-CoA dehydrogenase (EC 1.3.8.6)
319-1.547596Uncharacterized protein PA0446
117-1.367213Zinc-type alcohol dehydrogenase-like protein
016-1.085288Transcriptional regulator PA3565, LysR family
-114-0.944141LemA family protein
113-1.697871Beta-propeller domains of methanol dehydrogenase
214-2.064420FIG004694: Hypothetical protein
213-2.393500Cell division-associated, ATP-dependent zinc
213-1.539828hypothetical protein
YNN
2140.516581UPF0047 protein YjbQ
3121.001374FIG00953808: hypothetical protein
5120.6338292-haloalkanoic acid dehalogenase (EC 3.8.1.2)
2123.037858Site-specific tyrosine recombinase XerC
1132.751558Protein of unknown function DUF484
1112.775771Diaminopimelate epimerase (EC 5.1.1.7)
092.267903Diaminopimelate decarboxylase (EC 4.1.1.20)
1111.811187Diaminopimelate decarboxylase and/or
1101.979501Frataxin homolog CyaY, facilitates Fe-S cluster
-1101.134373Regulator of nucleoside diphosphate kinase
2141.662874Adenylate cyclase (EC 4.6.1.1)
3131.753946DNA-binding protein inhibitor Id-2-related
3142.059501FIG00954215: hypothetical protein
4141.843739Uncharacterized protein Tcr_0936
8172.199542Mobile element protein
9162.101170
7121.758594hypothetical protein
6121.542472
5120.815327hypothetical protein
4111.332432
2111.085213NnrS protein involved in response to NO
2101.347842Argininosuccinate lyase (EC 4.3.2.1)
YNN
115-3.227877Porphobilinogen synthase (EC 4.2.1.24)
116-4.372578Polyphosphate kinase (EC 2.7.4.1)
117-4.867213Exopolyphosphatase (EC 3.6.1.11)
025-5.832677Thioredoxin
026-5.872809
029-4.940803Transcription termination factor Rho
-121-3.6977303-polyprenyl-4-hydroxybenzoate carboxy-lyase (EC
018-3.5113322-polyprenylphenol hydroxylase and related
YNN
-227-3.727092Type IV pilus biogenesis protein PilN
025-4.456679Type IV pilus biogenesis protein PilO
027-4.957776Type IV pilus biogenesis protein PilP
139-8.424169Type IV pilus biogenesis protein PilQ
554-13.410019Shikimate kinase I (EC 2.7.1.71)
656-14.0814793-dehydroquinate synthase (EC 4.2.3.4)
554-13.132977Septum-associated cell division protein DamX
665-15.426316Glutamate synthase [NADPH] large chain (EC
759-14.230004Glutamate synthase [NADPH] small chain (EC
752-12.594165Uroporphyrinogen III decarboxylase (EC 4.1.1.37)
537-8.569636FIG00953225: hypothetical protein
534-7.850633putative outermembrane protein
534-8.425201
428-6.373489FIG00965478: hypothetical protein
431-6.482229Thioredoxin 2
432-7.063441O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) @
430-6.388614repeat region
124-5.022528hypothetical protein
124-4.750200Mobile element protein
120-3.431887Transposase
220-3.153421FIG00966635: hypothetical protein
014-1.356279DNA-cytosine methyltransferase (EC 2.1.1.37)
012-0.777043hypothetical protein
216-0.570899
114-0.318901Mrr restriction system protein
0150.377100hypothetical protein
-311-1.128160FIG00960913: hypothetical protein
-211-1.925851
011-2.936935RelB/StbD replicon stabilization protein
013-2.850806hypothetical protein
-114-2.660771
015-3.592894hypothetical protein
YNY
-1133.491004Acyl-phosphate:glycerol-3-phosphate
-3113.429937Dihydroneopterin aldolase (EC 4.1.2.25)
-292.9425522-amino-4-hydroxy-6-hydroxymethyldihydropteridine
091.696531CCA tRNA nucleotidyltransferase (EC 2.7.7.72)
1110.752559FIG004684: SpoVR-like protein
090.429497UPF0229 protein YeaH
110-0.216109Uncharacterized protein YeaG
29-2.007813Thiosulfate sulfurtransferase GlpE (EC 2.8.1.1)
010-1.040815Bis(5'-nucleosyl)-tetraphosphatase, symmetrical
010-0.808470ApaG protein
212-1.366992SSU rRNA
081.7975484-hydroxythreonine-4-phosphate dehydrogenase (EC
021-2.777820Periplasmic chaperone and peptidyl-prolyl
538-6.711195LPS-assembly protein LptD @ Organic solvent
651-10.555516Phosphotransferase involved in
655-11.520676Nucleotidyl transferase possibly involved in
555-11.545560DnaJ-like protein DjlA
472-17.252971FIG00953890: hypothetical protein
464-14.984797Ribulose-phosphate 3-epimerase (EC 5.1.3.1)
256-13.195413Phosphoglycolate phosphatase (EC 3.1.3.18)
451-9.894792Anthranilate synthase, aminase component (EC
349-9.695346Anthranilate synthase, amidotransferase component
241-8.763066Anthranilate phosphoribosyltransferase (EC
333-6.651107Indole-3-glycerol phosphate synthase (EC
329-5.426048Cyclic AMP receptor protein
224-4.309592Protein YhfA
226-5.973238S-adenosylmethionine decarboxylase proenzyme (EC
125-5.676212Ferrous-iron efflux pump FieF
231-6.520971Uncharacterized protein PA3962
031-6.444780
032-6.741993ATP-dependent helicase HrpB
136-7.595444site-specific recombinase, phage integrase
531-5.409747hypothetical protein
431-6.118720
330-5.856828
436-7.615763Transcriptional regulator, Xre family
439-7.865719
340-8.543523GGDEF domain protein
540-9.541815
338-8.587897
339-8.688665
233-7.438060Mobile element protein
129-7.307092repeat region
028-6.957724Mobile element protein
024-5.764523hypothetical protein
023-5.395963Mobile element protein
017-1.475591Copper sensory histidine kinase CusS
218-1.168126Copper-sensing two-component system response
-119-0.902905
-121-0.783510Lead, cadmium, zinc and mercury transporting
-123-2.572547Heavy metal transport/detoxification protein
024-2.636098CopG protein
030-4.714567Cytochrome c-type biogenesis protein DsbD,
032-4.687789Multicopper oxidase
229-4.431353
123-3.547491Copper resistance protein B
3150.889062Cytochrome c family protein
2141.528895Hypothetical protein involved in heavy metal
2111.759001
0112.359897repeat region
-1112.566286Transposase and inactivated derivatives, IS30
-1132.378183
-1132.904378repeat region
0142.921161Transposase and inactivated derivatives, IS30
0153.080928
2133.878104FIG00958355: hypothetical protein
1124.129433Bll4814 protein
0124.126985
0123.990060Flavodoxin reductases (ferredoxin-NADPH
-1134.639558
-1125.012394Copper/silver efflux RND transporter, outer
-2144.571351Copper/silver efflux RND transporter, membrane
-3134.371291Copper/silver efflux RND transporter,
-2134.545818
-1124.637275
0113.513317
YNN
213-1.318086SSU ribosomal protein S6p
310-1.803769SSU ribosomal protein S18p @ SSU ribosomal
210-1.298179FIG003573: hypothetical protein
311-0.137325LSU ribosomal protein L9p
2110.171569Replicative DNA helicase (DnaB) (EC 3.6.4.12)
1100.551043Alanine racemase (EC 5.1.1.1)
0100.348305FIG00954617: hypothetical protein
0101.501722FIG00954617: hypothetical protein
2111.797548UPF0313 [4Fe-4S] protein YgiQ
2112.572402Methyl-accepting chemotaxis sensor/transducer
2122.726340Two-component system response regulator protein
0112.960102FIG014328: hypothetical protein
-1133.612356Type IV fimbriae expression regulatory protein
-1134.234806Two-component sensor PilS
0124.566985FIG00953647: hypothetical protein
-1133.506345Outer membrane beta-barrel assembly protein BamD
-1103.538837LSU rRNA pseudouridine(1911/1915/1917) synthase
1102.839591FIG00003370: Multicopper polyphenol oxidase
2113.088218Chaperone protein ClpB (ATP-dependent unfoldase)
4142.678624tRNA-Asn-GTT
3161.425334tRNA-Pro-TGG
YNN
0163.015169Cell division protein ZapE
0152.571370Transcriptional regulator, AraC family
2143.771881Endonuclease V (EC 3.1.21.7)
2123.4502951,6-anhydro-N-acetylmuramyl-L-alanine amidase
2124.062740Membrane protein required for beta-lactamase
2124.303648Methyl-accepting chemotaxis sensor/transducer
2133.488319Putative deoxyribonuclease YjjV
3134.229465
1143.628504Methylphosphotriester-DNA--protein-cysteine
2144.193207protein of unknown function RIO1
1133.598421Deacetylases, including yeast histone deacetylase
1143.226916Acyl-CoA thioesterase II (EC 3.1.2.-)
2134.067605Hydrolase in polyol utilization gene cluster,
2143.458761YpfJ protein, zinc metalloprotease superfamily
2153.280048CopG protein
1162.956904hypothetical protein
2173.237194Nitric oxide -responding transcriptional
1163.386392Nitrate/nitrite response regulator protein
2163.396160Nitrate/nitrite sensor protein NarX
1163.153160Nitrate/nitrite transporter NarK/U 1
1143.397778Nitrate/nitrite transporter NarK/U
1133.780046Respiratory nitrate reductase alpha chain (EC
0133.944825Respiratory nitrate reductase beta chain (EC
1143.969088Respiratory nitrate reductase delta chain (EC
2124.231775Respiratory nitrate reductase gamma chain (EC
2154.725922PpiC-type peptidyl-prolyl cis-trans isomerase
1184.434055GTP 3',8-cyclase (EC 4.1.99.22)
1204.856071Molybdenum cofactor biosynthesis protein MoaB
2184.955276Molybdopterin molybdenumtransferase (EC
1175.053730Cytochrome b561
-1204.975768Sensory histidine kinase QseC
-1194.356625Two-component system response regulator QseB
0165.056264FIG00953528: hypothetical protein
-1203.765042Oxidoreductase, short-chain
-1205.278909long-chain acyl-CoA synthetase
-1204.593301Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
-1204.805677Thermostable hemolysin delta-VPH
1205.471050hypothetical protein
1205.405046Outer membrane protein assembly factor YaeT
1195.846321Outer membrane protein
1184.739587
1175.586836Lipid A 4'-phosphatase LpxF-like, putative
1165.074899Sulfatase family protein
1154.601091DNA-binding response regulator ColR
0154.460394Two-component system sensor histidine kinase
-1143.783412SAM-dependent methyltransferase
YNN
214-2.444195Uncharacterized protease YhbU
112-2.257957Uncharacterized peptidase U32 family member YhbV
111-2.672614Putative lipid carrier protein
111-3.485087FIG00715063: hypothetical protein
314-3.989457Nitric oxide -responding transcriptional
223-4.338564Ribonucleotide reductase of class III
125-4.253549hypothetical protein
228-4.875880Ribonucleotide reductase of class III
329-5.124025Polyferredoxin
327-5.167714High-affinity iron permease
223-3.974907hypothetical protein
223-4.386806Periplasmic protein p19 involved in high-affinity
223-4.031023Uncharacterized MFS-type transporter
219-3.816215
318-3.462709small multidrug resistance family (SMR) protein
417-2.986605CBS domain protein
221-3.917454Nitric-oxide reductase subunit C (EC 1.7.99.7)
319-3.466257Nitric-oxide reductase subunit B (EC 1.7.99.7)
216-3.259713Nitric oxide reductase activation protein NorD
YNN
220-3.800648Sugar fermentation stimulation protein SfsA
119-5.599081dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133)
221-5.990389Auxin efflux carrier family protein
325-6.508637
332-6.642893FIG00784013: hypothetical protein
334-6.513227putative membrane protein
234-4.790702Fatty-acid peroxygenase (EC 1.11.2.4)
YNN
211-0.760149Phosphonate ABC transporter phosphate-binding
111-1.063803cAMP-binding proteins - catabolite gene activator
09-0.388120Regulator of competence-specific genes
0100.014475SAM-dependent methyltransferases
-3152.211808FIG00955330: hypothetical protein
-2183.208544Multimodular transpeptidase-transglycosylase (EC
-3243.475496FIG140336: TPR domain protein
-3273.482549Uncharacterized protein YqcC
-2272.915931Periplasmic protein TonB, links inner and outer
-3202.246203Acetolactate synthase large subunit (EC 2.2.1.6)
-3160.957167Acetolactate synthase small subunit (EC 2.2.1.6)
-3140.254845Ketol-acid reductoisomerase (NADP(+)) (EC
-115-1.213023CDP-diacylglycerol--serine
123-1.898245Protein-methionine-sulfoxide reductase catalytic
332-2.425738Protein-methionine-sulfoxide reductase
238-4.287723repeat region
130-4.128319SSU rRNA ## 16S rRNA, small subunit ribosomal
331-6.955114tRNA-Ile-GAT
334-6.275893tRNA-Ala-TGC
335-6.634025LSU rRNA ## 23S rRNA, large subunit ribosomal
234-5.7544035S rRNA ## 5S ribosomal RNA
427-4.467568Paraquat-inducible protein A
628-4.362628Paraquat-inducible protein A
625-3.109022Uncharacterized protein YebT
623-3.475261Chromosome segregation ATPases
623-3.270026FIG00961017: hypothetical protein
623-3.471565FIG00954491: hypothetical protein
527-4.491941Carboxynorspermidine decarboxylase (EC 4.1.1.96)
330-5.816049Carboxynorspermidine synthase (EC 1.5.1.43)
523-3.4904852-isopropylmalate synthase (EC 2.3.3.13)
524-2.301548Periplasmic protein TonB, links inner and outer
423-3.403128Ribosomal-protein-S18p-alanine acetyltransferase
421-3.196693Phosphotransferase system, HPr-related proteins
420-2.975422Trehalose-6-phosphate phosphatase (EC 3.1.3.12)
420-2.263918Alpha,alpha-trehalose-phosphate synthase
223-3.372513Carbonic anhydrase, beta class (EC 4.2.1.1)
128-4.984639Permease of the drug/metabolite transporter (DMT)
027-4.570781tRNA-Met-CAT
129-5.420442Predicted transcriptional regulator LiuR of
020-4.490135Acetyl-CoA acetyltransferase (EC 2.3.1.9)
019-4.485887Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
016-4.388075Methylcrotonyl-CoA carboxylase biotin-containing
014-3.143811Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
YNN
116-3.157795
213-4.247174hypothetical protein
213-4.297274hypothetical protein
-115-3.691160Chromosome segregation ATPases
-117-3.793520UDP-glucose 4-epimerase (EC 5.1.3.2)
-117-3.554210hypothetical protein
118-2.613387FIG00459097: hypothetical protein
420-1.246365hypothetical protein
YNN
0143.648698D-glycerate 2-kinase (EC 2.7.1.165)
-1133.4205542-hydroxy-3-oxopropionate reductase (EC
-1143.681701Hydroxypyruvate isomerase (EC 5.3.1.22)
-1133.641041Glyoxylate carboligase (EC 4.1.1.47)
-1123.813554Transcriptional regulator, LysR family, in
-2113.3327445-hydroxyisourate hydrolase (EC 3.5.2.17)
-1112.947634(Y14336) putative extracellular protein
-1123.586715DNA-binding heavy metal response regulator
0123.777151Heavy metal sensor histidine kinase
-1123.642373Exodeoxyribonuclease III (EC 3.1.11.2)
-1134.373557EAL domain protein
-1145.016349Transcriptional regulator, AcrR family
0135.164896hypothetical protein
0125.039733Methyl-accepting chemotaxis sensor/transducer
-1114.011003Nucleoside-binding outer membrane protein
-1103.189597Putative glutathione-regulated potassium-efflux
-1111.558454Ca ion P-type ATPase
0120.466631
319-2.652064FIG137887: membrane protein related to purine
420-3.093339Ureidoglycolate lyase (EC 4.3.2.3)
218-2.221663Allantoicase (EC 3.5.3.4)
119-0.9570342-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline
0160.692285Uricase (urate oxidase) (EC 1.7.3.3)
2142.4994635-hydroxyisourate hydrolase (EC 3.5.2.17)
1152.085160Homoserine/homoserine lactone efflux protein
2132.979223Xanthine/uracil/thiamine/ascorbate permease
2122.938686
2122.684787Transcriptional regulator, GntR family
1132.099278
-1141.193687Guanine deaminase (EC 3.5.4.3)
-2121.201798Xanthine and CO dehydrogenases maturation factor,
-215-0.629594Xanthine dehydrogenase, molybdenum binding
020-1.096907Xanthine dehydrogenase iron-sulfur subunit (EC
020-0.5872892-Oxobutyrate oxidase, putative
120-0.532831Nucleoside ABC transporter, substrate-binding
219-0.541544
YNN
-220-3.046412Uncharacterized methyltransferase PA1407
-219-3.437921
-117-3.686242Hypothetical protein involved in heavy metal
016-3.774620Transcriptional regulator, AcrR family
019-3.502174Nucleoside-binding outer membrane protein
-120-3.115447hypothetical protein
015-2.941531
-216-2.564416Curli production assembly/transport component
-117-2.554991Curli production assembly/transport component
018-2.567290Curli production assembly/transport component
016-2.547066DNA-binding HTH domain-containing protein
015-2.920982COG1280: Putative threonine efflux protein
121-3.598386Oxidoreductase, aldo/keto reductase family
022-3.941999Oxidoreductase, short-chain
124-2.756402Transcriptional activator MetR
224-2.7618885-methyltetrahydropteroyltriglutamate--homocystei
225-2.556914Aerobic glycerol-3-phosphate dehydrogenase (EC
327-2.293109Cys-tRNA(Pro) deacylase YbaK
324-3.179844Membrane-bound lytic murein transglycosylase F
223-3.137313Endo/excinuclease domain protein
-120-3.429473Glutathione S-transferase
YNN
3121.093768GMP synthase [glutamine-hydrolyzing],
4131.133189Multicopper oxidase
4150.668762tRNA-specific adenosine-34 deaminase (EC
5150.934025Ferric iron ABC transporter, ATP-binding protein
4160.726812Ornithine carbamoyltransferase (EC 2.1.3.3)
4172.582878Monothiol glutaredoxin GrxD
3172.755530Bacterioferritin (EC 1.16.3.1)
3173.365788Bacterioferritin-associated ferredoxin
2163.440030diguanylate cyclase/phosphodiesterase (GGDEF &
2164.108887YaeQ protein
3164.282812Single-stranded-DNA-specific exonuclease RecJ
3124.335584Formate dehydrogenase-O, major subunit (EC
3124.540746NADH:flavin oxidoreductases, Old Yellow Enzyme
3124.563041putative membrane protein
4124.679085Peptide chain release factor 2 @ programmed
2143.275944Lysyl-tRNA synthetase (class II) (EC 6.1.1.6)
2142.984698FIG00953322: hypothetical protein
YNN
216-0.537415Phenazine biosynthesis protein PhzF like
116-0.072355FIG00957304: hypothetical protein
221-0.791241Pirin
215-0.147768NAD(P)H dehydrogenase (quinone), Type IV (EC
3150.213580Cytochrome c family protein
3150.102083Copper resistance protein B
4161.248363
1130.125474Multicopper oxidase
2120.2878854-amino-4-deoxy-L-arabinose transferase
YNN
219-1.441493probable glucosyl transferase
-218-2.480310HesA/MoeB/ThiF family protein => sulfur transfer
-217-3.424957Phosphate/pyrophosphate-specific outer membrane
-118-3.507575FIG110192: hypothetical protein
017-3.898191Dienelactone hydrolase family protein
021-4.481362Cytochrome c-type protein NapC
-121-5.002481Nitrate reductase cytochrome c550-type subunit
-127-6.751643Periplasmic nitrate reductase (EC 1.7.99.4)
-234-5.883461Periplasmic nitrate reductase component NapD
-235-5.779070periplasmic nitrate reductase NapE
-234-5.796846Uncharacterized MFS-type transporter YnfM
035-5.674454
236-5.408723
235-4.602696Protein SprT
235-4.903649FIG00956663: hypothetical protein
-132-5.601134Inner membrane protein YohC
030-6.055757heat shock protein DnaJ domain protein
-127-5.739093tRNA-(cytosine32)-2-thiocytidine synthetase TtcA
-122-5.383175
019-5.3391952-keto-3-deoxy-D-arabino-heptulosonate-7-phosphat
118-6.263054DNA-3-methyladenine glycosylase (EC 3.2.2.20)
419-4.008143hypothetical protein
514-2.312320FIG00954701: hypothetical protein
412-1.869434
511-1.284316Cytochrome d ubiquinol oxidase subunit I (EC
411-0.307208Cytochrome d ubiquinol oxidase subunit II (EC
2142.159790Cytochrome d ubiquinol oxidase subunit X (EC
2120.194877Cyd operon protein YbgE
110-0.664496NLP/P60 family protein
09-1.084640NLP/P60 family protein
013-2.996819probable DNA repair exonuclease
117-4.000902Molybdenum ABC transporter ATP-binding protein
121-4.885982Molybdenum ABC transporter permease protein ModB
125-5.358916Molybdenum ABC transporter, substrate-binding
127-5.744368DNA-binding domain of ModE / Molybdate-binding
239-9.172060Glutathione peroxidase (EC 1.11.1.9)
132-6.578196Long-chain fatty acid transport protein
032-6.587315Thiosulfate sulfurtransferase, rhodanese (EC
131-6.531997Ribonuclease D (EC 3.1.26.3)
028-5.491954Protein YcgL
230-4.357532
YNN
2132.422175Flagellar L-ring protein FlgH
3113.557401Flagellar P-ring protein FlgI
3123.335233Flagellar protein FlgJ [peptidoglycan hydrolase]
3133.372362Flagellar hook-associated protein FlgK
2133.386956Flagellar hook-associated protein FlgL
1132.869899O-antigen biosynthesis protein
1123.239534
1132.149870Flagellin protein FlaA
-1121.784063
0131.479990Flagellin protein FlaG
0121.315864Flagellar cap protein FliD
-1111.796039Flagellar biosynthesis protein FliS
-1120.732844hypothetical protein
-1131.812816Protein of unknown function DUF86, SO_3166 group
-2113.525653Nucleotidyltransferase domain protein, SO_3165
-2124.201929DUF1232 domain-containing protein
-3103.744613Transcriptional regulator, Cro/CI family
-2113.847856FIG00954549: hypothetical protein
-2104.246079FOG: TPR repeat, SEL1 subfamily
-293.780574diguanylate cyclase/phosphodiesterase (GGDEF &
-1103.038532Periplasmic protease
-2102.149785Quinone oxidoreductase (EC 1.6.5.5)
-391.095796Aspartyl aminopeptidase (EC 3.4.11.21)
-280.416624LSU rRNA pseudouridine(746) synthase (EC
-28-0.485397Cell division topological specificity factor
09-1.430125Septum site-determining protein MinD
09-2.080614Septum site-determining protein MinC
113-4.017363Lipid A biosynthesis lauroyl acyltransferase (EC
113-4.277283Outer-membrane-phospholipid-binding lipoprotein
114-4.304425Surface lipoprotein
114-4.204813beta-(1-3)-glucosyl transferase
213-4.666404Inner membrane protein YjcH, clustering with
112-3.835676Acetate permease ActP (cation/acetate symporter)
114-3.441130Oxidoreductase, short-chain
-116-2.948914Uncharacterized MFS-type transporter
-213-3.295335Uncharacterized protein PA3276
YNN
223-1.904867Signal transduction histidine-protein kinase BarA
224-2.012436UPF0126 inner membrane protein YicG
224-2.540611Transcriptional regulator, LysR family
324-2.686286Cysteine synthase B (EC 2.5.1.47)
324-2.84202323S rRNA (uracil(1939)-C(5))-methyltransferase
-133-4.569761Inactive (p)ppGpp 3'-pyrophosphohydrolase domain
033-5.090245Nucleoside triphosphate pyrophosphohydrolase MazG
-134-4.656907Nucleoprotein/polynucleotide-associated enzyme
-133-3.347607FIG00962419: hypothetical protein
-231-3.174525Protein-L-isoaspartate O-methyltransferase (EC
-232-3.713576
-130-3.377713FIG006285: ICC-like protein phosphoesterase
YNN
213-2.922887Aminodeoxychorismate lyase (EC 4.1.3.38)
312-3.200260Murein endolytic transglycosylase MltG
411-3.641729Thymidylate kinase (EC 2.7.4.9)
311-3.335013DNA polymerase III delta prime subunit (EC
310-2.878095Type IV pilus biogenesis protein PilZ
212-2.062989Uncharacterized metal-dependent hydrolase YcfH
YNN
-327-4.010384hypothetical protein
024-4.268550Glutathione S-transferase (EC 2.5.1.18)
024-4.429363Uncharacterized conserved protein YfiP, contains
023-4.972554Inner membrane protein YbaN
024-4.612885FIG00953416: hypothetical protein
023-4.034445ATP-dependent DNA helicase RecQ
022-3.596447Transcriptional regulator SlyA
222-4.181258putative patatin-like phospholipase
222-4.519359SelT/selW/selH selenoprotein domain
123-3.828072Permease of the drug/metabolite transporter (DMT)
021-4.208581Protein secretion chaperonin CsaA
020-5.318856Transcriptional regulator, AraC family
018-5.357848Proteins incorrectly called adenylate cyclase
121-4.007374hypothetical protein
YNN
113-3.088985Na(+)-dependent branched-chain amino acid
214-1.932104FIG00953885: hypothetical protein
311-1.493625FIG00956080: hypothetical protein
312-1.792993FIG00953296: hypothetical protein
315-1.878679Permeases of the major facilitator superfamily
315-2.062522Chaperone protein HtpG
311-2.130925FIG00964480: hypothetical protein
311-3.1623195-oxo-L-prolinase, putative
212-3.516687Helicase subunit of the DNA excision repair
114-3.699708Methyl-accepting chemotaxis sensor/transducer
222-4.596228Methyl-accepting chemotaxis sensor/transducer
118-3.113090Serine/threonine:Na+ symporter SstT
121-3.4244393-oxoacyl-[acyl-carrier-protein] synthase, KASI
118-3.2910193-hydroxyacyl-[acyl-carrier-protein] dehydratase,
218-3.474153Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC
017-2.417369Lipase (EC 3.1.1.3)
-117-2.461747Phosphohistidine phosphatase SixA
012-3.1989151,4-dihydroxy-2-naphthoyl-CoA hydrolase (EC
-112-2.429324Predicted hydrolase or acyltransferase PA1621
013-1.857945Hydrolase, alpha/beta fold family
113-1.631365Type IIA topoisomerase (DNA gyrase/topo II,
212-2.139372Uncharacterized UPF0118 membrane protein
110-1.480651FIG00613342: Bacterial patatin-like phospholipase
29-1.314898Selenide,water dikinase (EC 2.7.9.3)
118-1.998126Selenophosphate-dependent tRNA 2-selenouridine
023-3.093854putative lipoprotein
025-3.187342FIG022979: MoxR-like ATPases
-321-3.547293FIG002343: hypothetical protein
YNN
214-0.624383Para-aminobenzoate synthase, aminase component
111-0.761941FIG002781: Alpha-L-glutamate ligase family
1120.054691FIG139976: hypothetical protein
0122.295432FIG008443: hypothetical protein
2132.790006Propionate catabolism operon transcriptional
1143.114138Methylisocitrate lyase (EC 4.1.3.30)
2142.7684632-methylcitrate synthase (EC 2.3.3.5)
1143.1225552-methylcitrate dehydratase
2133.3333412-methylaconitate isomerase
2101.386080Phosphoenolpyruvate synthase regulatory protein
391.300442Phosphoenolpyruvate synthase (EC 2.7.9.2)
YNN
011-3.492406Enoyl-[acyl-carrier-protein] reductase [NADH] (EC
113-3.828553ABC transporter, ATP-binding protein (cluster 5,
114-3.869093ABC transporter, permease protein 2 PA1808
216-3.675543ABC transporter premease protein PA1809
214-3.753412ABC transporter periplasmic substrate-binding
221-1.393850ABC transporter periplasmic substrate-binding
YNN
-218-3.126417
-220-3.947776
-120-4.275497Putative drug efflux protein
-220-5.530313hypothetical protein
-119-5.616991
019-5.652270tRNA-Leu-TAA
019-5.940905DinG family ATP-dependent helicase CPE1197
019-6.080467Hypothetical protein, restriction
120-6.317598Coproporphyrinogen III oxidase,
222-5.785557Methyl-accepting chemotaxis sensor/transducer
119-5.625497UTP--glucose-1-phosphate uridylyltransferase (EC
119-5.341373Glyoxalase/bleomycin resistance
017-4.451150Glutathione reductase (EC 1.8.1.7)
-115-3.842753Copper metallochaperone PCu(A)C, inserts Cu(I)
-117-3.628684
-118-3.290194Alpha-amylase (EC 3.2.1.1)
YNN
-215-3.025075Cell division inhibitor Slr1223 (YfcH in EC),
-114-3.256940
014-3.996551COG1683: Uncharacterized conserved protein /
-117-4.365097Transcriptional regulator, MerR family,
-120-5.422765Deoxyribodipyrimidine photolyase (EC 4.1.99.3)
024-5.988957FIG002994: Putative transcriptional regulator
124-6.672277Oxidoreductase, short-chain
117-5.990915Amine oxidase, flavin-containing
118-5.738275FIG001571: Hypothetical protein
218-5.538066S-adenosyl-L-methionine dependent
117-4.741942Methyl-accepting chemotaxis protein
115-4.462200Nitrite reductase [NAD(P)H] large subunit (EC
016-4.048089Nitrite reductase [NAD(P)H] small subunit (EC
021-3.874692Nitrite transporter from formate/nitrite family
021-3.805834Nitrite transporter-associated serine/threonine
-122-3.739167Cytochrome c551/c552
017-3.945624Coproporphyrinogen III oxidase,
-121-4.680227NAD-dependent protein deacetylase of SIR2 family
022-5.347938Putative helicase
023-5.366441hypothetical protein
020-5.563600Acyl carrier protein
020-5.460387Polyketide synthase modules and related proteins
022-5.546456Probable poly(beta-D-mannuronate) O-acetylase (EC
017-4.959882hypothetical protein
023-5.712351Membrane carboxypeptidase (penicillin-binding
125-6.144837hypothetical protein
127-6.293166Transcriptional regulator, LysR family
227-6.379326Methylmalonate-semialdehyde dehydrogenase (EC
331-6.598659Enoyl-CoA hydratase (EC 4.2.1.17) => degradation
435-7.0752873-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
431-6.7632643-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
424-5.828216Acyl-CoA dehydrogenase (EC 1.3.8.1) =>
424-5.727414hypothetical protein
227-5.953337DNA topoisomerase III (EC 5.99.1.2)
226-5.598261Alpha-methylacyl-CoA racemase (EC 5.1.99.4)
226-5.0728693-methylmercaptopropionyl-CoA ligase (EC
123-4.329361Acyl-CoA dehydrogenase, short-chain specific (EC
234-5.2197863-ketoacyl-CoA thiolase (EC 2.3.1.16) @
040-7.3185403-hydroxyacyl-CoA dehydrogenase
139-7.590828Transcriptional regulator, AraC family
037-7.227799probable membrane protein YPO3302
028-5.364599
030-5.675355Two-component system sensor histidine kinase
231-6.440047
221-3.566015
221-2.747044
322-3.214077
235-6.696972
233-7.022736
238-7.285802hypothetical protein
139-7.166465Glutathione S-transferase, omega (EC 2.5.1.18)
033-6.330676Anthranilate phosphoribosyltransferase-like
031-6.691411tRNA 2-thiouridine synthesis protein TusE
-121-4.805729tRNA 5-methylaminomethyl-2-thiouridine synthase
-120-4.360092tRNA 5-methylaminomethyl-2-thiouridine synthase
-211-2.192574tRNA 5-methylaminomethyl-2-thiouridine synthase
-112-2.908582Putative TEGT family carrier/transport protein
014-2.990029tRNA-Ser-TGA
-114-2.397172Precorrin-2 oxidase (EC 1.3.1.76) @
216-2.896959Seryl-tRNA synthetase (EC 6.1.1.11)
013-3.487901Fluoride ion transporter CrcB
-312-1.919601Replication-associated recombination protein
-312-2.059315Outer membrane lipoprotein carrier protein LolA
-113-2.135412DNA translocase FtsK
-114-1.486891Thioredoxin reductase (EC 1.8.1.9)
-114-1.625721Leucyl/phenylalanyl-tRNA--protein transferase (EC
-215-2.340972Arginyl-tRNA--protein transferase (EC 2.3.2.8)
018-4.332056Translation initiation factor 1
019-4.522078ATP-dependent Clp protease ATP-binding subunit
019-4.540947ATP-dependent Clp protease adaptor protein ClpS
222-5.452229Cold shock protein of CSP family => CspD (naming
428-7.642989Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
325-5.555765Isocitrate dehydrogenase [NADP] (EC 1.1.1.42);
218-4.496657Nudix-like NDP and NTP phosphohydrolase NudJ
YNN
290.614200Outer-membrane-phospholipid-binding lipoprotein
3110.550571Chromosome segregation ATPases
2122.748862NADPH-dependent 7-cyano-7-deazaguanine reductase
0133.737930Uncharacterized efflux ABC transporter, permease
1163.923525Uncharacterized efflux ABC transporter, permease
0174.032201Uncharacterized efflux ABC transporter,
-1175.029911Acyl-CoA dehydrogenase
0165.261916FIG00956241: hypothetical protein
1155.189657Integration host factor beta subunit
1144.629647L-carnitine dehydratase/bile acid-inducible
194.758942repeat region
084.246375FIG00966635: hypothetical protein
093.714397Transposase
-1103.396195Mobile element protein
-192.781096hypothetical protein
0131.863288Pyruvate:Oxaloacetate transcarboxylase domain
0101.191487Pyruvate:Oxaloacetate transcarboxylase domain
0121.471902hypothetical protein
2113.133047Epoxide hydrolase (EC 3.3.2.9)
2113.758917TRAP-type C4-dicarboxylate transport system,
3134.211220Similar to citrate lyase beta chain, 3
3144.145846L-carnitine dehydratase/bile acid-inducible
5135.640067MmgE/PrpD family protein
3135.314125Putative ring-cleaving dioxygenase
2114.191285Acyl-CoA dehydrogenase STM0857
1113.780162COGs COG3777
2113.584185Transcriptional regulator PA0877, LysR family
1113.230812
019-0.341513hypothetical protein
227-3.181109Uncharacterized MFS-type transporter
339-8.176115Peptidyl-tRNA hydrolase ArfB (EC 3.1.1.29)
239-6.909993Membrane-bound metal-dependent hydrolase
238-6.975877Uncharacterized amino acid permease MSMEG_6727,
238-7.010717Methyl-accepting chemotaxis sensor/transducer
136-7.152811Efflux ABC transporter, permease/ATP-binding
237-7.298707Thioredoxin
034-7.332674Rhodanese domain protein UPF0176
031-7.386966Cell division protein BolA
032-6.322323FIG00954136: hypothetical protein
-131-6.414464Fumarate hydratase class II (EC 4.2.1.2)
-131-6.1801213-ketoacyl-CoA thiolase (EC 2.3.1.16) @
-229-6.313798UDP-galactose-lipid carrier transferase (EC
-131-5.306668
131-5.8451844'-phosphopantetheinyl transferase entD (EC
028-7.223124Two-component system sensor histidine kinase
131-7.815747Two-component transcriptional response regulator,
230-7.714806Ribonucleotide reductase of class Ia (aerobic),
034-7.065501
131-7.443223Ribonucleotide reductase of class Ia (aerobic),
025-6.029843
-122-4.758515hypothetical protein Pfl_5213
-120-3.289309Transposase and inactivated derivatives
YNN
0123.921572Ferrichrome-iron receptor
0114.154150hypothetical protein
0113.756400Putative sterol carrier protein
-1103.724061Phosphoglycerate mutase family protein
-1113.741920Peptidase, U7 family
-1113.499164Acryloyl-CoA reductase AcuI/YhdH (EC 1.3.1.84)
-1113.471407Histidine kinase/response regulator hybrid
-1103.690692Putative SigmaB asociated two-component system
-194.133651Phosphoserine phosphatase rsbX (EC 3.1.3.3)
-194.085086Anti-sigma B factor RsbT
-283.657282RsbS, negative regulator of sigma-B
YNN
0163.538476NADH-ubiquinone oxidoreductase chain G (EC
0173.260649NADH-ubiquinone oxidoreductase chain H (EC
0183.295034NADH-ubiquinone oxidoreductase chain I (EC
2193.350369NADH-ubiquinone oxidoreductase chain J (EC
2193.459743NADH-ubiquinone oxidoreductase chain K (EC
3173.380949NADH-ubiquinone oxidoreductase chain L (EC
1173.425259NADH-ubiquinone oxidoreductase chain M (EC
1163.657119NADH-ubiquinone oxidoreductase chain N (EC
YNN
-193.101422Polysaccharide biosynthesis protein
1113.246962putative glycosyltransferase - possibly involved
1112.591651Tyrosine-protein kinase (EC 2.7.10.2)
1112.241523FIG00904907: hypothetical protein
1121.855601Transcriptional activator RfaH
2131.283580Glycosyl transferase, group 1 family protein
1130.272755membrane protein, putative
014-0.276764
115-0.312144Glycosyl transferase, group 1
018-0.149050Glycosyltransferase
224-1.647084hypothetical protein
222-1.751269
520-2.306213Glycosyl transferase, group 2 family protein
419-2.494987hypothetical protein
219-2.613757Flp pilus assembly protein TadD, contains TPR
316-2.675821Type II/IV secretion system protein TadC,
YNN
316-1.594049Succinylornithine transaminase (EC 2.6.1.81)
415-1.178457Enoyl-CoA hydratase/isomerase family protein
517-1.464771
614-2.076659tRNA-Ser-GGA
513-1.998006
210-0.175558LrgA-associated membrane protein LrgB
080.386452Antiholin-like protein LrgA
090.651001Type cbb3 cytochrome oxidase biogenesis protein
080.275473DNA-binding transcriptional regulator, MocR
2101.092624
1101.960665
4131.048225
3110.760186Putative inner membrane protein
2120.488995Acetyl-CoA synthetase (EC 6.2.1.1)
2120.597524hypothetical protein
2110.697068DEAD-box ATP-dependent RNA helicase DeaD (= CshA)
YNN
318-3.905435Oxidoreductase, short-chain
320-4.618848Putative NADP-dependent oxidoreductase PA1648
121-3.945225Orotidine 5'-phosphate decarboxylase (EC
122-3.535555Methylenetetrahydrofolate dehydrogenase (NADP+)
122-3.570794diguanylate cyclase/phosphodiesterase (GGDEF &
121-3.405084
125-2.633626DNA-binding transcriptional regulator, MocR
121-2.981056OmpA family protein
218-4.011590
315-4.387622Extracellular solute-binding protein, family 3
113-4.043408repeat region
012-3.982752Electron transfer flavoprotein, alpha subunit
013-4.073923Electron transfer flavoprotein, beta subunit
010-3.700432Electron transfer flavoprotein-ubiquinone
YNN
2122.754089NADH:flavin oxidoreductases, Old Yellow Enzyme
2125.416272S-formylglutathione hydrolase (EC 3.1.2.12)
2125.328994S-(hydroxymethyl)glutathione dehydrogenase (EC
1135.546159Transcriptional regulator, LysR family, in
1135.652387ribosomal subunit interface protein, putative
1135.220513hypothetical protein
-1135.0361352-C-methyl-D-erythritol 4-phosphate
-2143.079820Cell division protein DivIC (FtsB), stabilizes
-2143.145063Enolase (EC 4.2.1.11)
YNN
021-3.113203Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam
025-2.9832693-hydroxyacyl-[acyl-carrier-protein] dehydratase,
026-3.142179UDP-3-O-[3-hydroxymyristoyl] glucosamine
129-4.061203Periplasmic chaperone of outer membrane proteins
132-4.786815Outer membrane protein assembly factor YaeT
530-5.416035Intramembrane protease RasP/YluC, implicated in
019-4.1787501-deoxy-D-xylulose 5-phosphate reductoisomerase
-16-2.208552Phosphatidate cytidylyltransferase (EC 2.7.7.41)
-280.046200Undecaprenyl diphosphate synthase (EC 2.5.1.31)
191.415640Ribosome recycling factor
-190.260152Uridylate kinase (EC 2.7.4.22)
090.553104Translation elongation factor Ts
0101.036530SSU ribosomal protein S2p (SAe)
0121.012943Methionine aminopeptidase (EC 3.4.11.18)
212-0.482941[Protein-PII] uridylyltransferase (EC 2.7.7.59) /
111-0.681496Na(+) H(+) antiporter subunit G
2121.358271Na(+) H(+) antiporter subunit F
YNN
0133.024089Two-component transcriptional response regulator,
1133.260912Permease of the drug/metabolite transporter (DMT)
3124.011927Uncharacterized conserved protein YfiP, contains
3123.839425Putative NADPH-quinone reductase (modulator of
7114.393656Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)
7134.254510Metallo-beta-lactamase family protein,
4144.924241Decarboxylase family protein
4154.797611Regulatory protein RecX
2204.543601RecA protein
1204.116955Nicotinamide-nucleotide amidase (EC 3.5.1.42)
0184.371235Putative diheme cytochrome c-553
-2153.242694Cytochrome c family protein
YNN
-2153.588071tRNA-Thr-CGT
-2143.339352
-2143.478896
0144.442480hypothetical protein
3144.524679hypothetical protein
4145.059140Uncharacterized protein RSP_3230
7184.200750protein of unknown function DUF1130
7194.627832FIG00953341: hypothetical protein
3172.762885Glucose dehydrogenase, PQQ-dependent (EC
2172.290074Soluble aldose sugar dehydrogenase, PQQ-dependent

 
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