>PF07201#Hypersensitivity response secretion protein HrpJ Length = 293 Score = 30.2 bits (68), Expect = 0.006 Identities = 9/51 (17%), Positives = 24/51 (47%) Query: 138 LHAVDARVNELEELLPLLMKDKLLAKGVSHLLSSQLTRILRTHAAMSVLGH 188 + V+ +VN+ +P L + + +++ +S L +S + + A + Sbjct: 80 VSDVEEQVNQYLSKVPELEQKQNVSELLSLLSNSPNISLSQLKAYLEGKSE 130
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 142 bits (361), Expect = 7e-40 Identities = 83/387 (21%), Positives = 149/387 (38%), Gaps = 84/387 (21%) Query: 5 IGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGET------LVGQPAKRQA 58 + IDLGT N+ + + + E PS++A QD VG AK+ Sbjct: 13 LSIDLGTANTLIYVKGQGIV-LNE--------PSVVAIRQDRAGSPKSVAAVGHDAKQML 63 Query: 59 VTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAE 118 P N + AI+ + +D I F + + Sbjct: 64 GRTPGN-IAAIRPM-----------KDGVIADFFVTEK------------------MLQH 93 Query: 119 VLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALA 178 +K++ + P ++ VP +R+A +++ + AG +I EP AAA+ Sbjct: 94 FIKQVHS---NSFMRPSPRVLVCVPVGATQVERRAIRESAQGAGAREVFLIEEPMAAAIG 150 Query: 179 YGL--DKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRL 236 GL + TG+ V D+GGGT ++++I ++ V + +GG+ FD + Sbjct: 151 AGLPVSEATGS---MVVDIGGGTTEVAVISLNGV---------VYSSSVRIGGDRFDEAI 198 Query: 237 INYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSA----QQTDVNLPYITADATG 292 INY+ + G + AE+ K E+ SA + ++ + Sbjct: 199 INYVRRNYGSLIG-------------EATAERIKHEIGSAYPGDEVREIEVRGRNLAEGV 245 Query: 293 PKHMNIKVTRAKLESLVEDLVNRSIEPLKVALQD-AGLSVSDIDD--VILVGGQTRMPMV 349 P+ + + LE+L E + + + VAL+ SDI + ++L GG + + Sbjct: 246 PRGFTLN-SNEILEALQEP-LTGIVSAVMVALEQCPPELASDISERGMVLTGGGALLRNL 303 Query: 350 QKKVAEFFGKEPRKDVNPDEAVAIGAA 376 + + E G +P VA G Sbjct: 304 DRLLMEETGIPVVVAEDPLTCVARGGG 330
>HOKGEFTOXIC#Hok/Gef cell toxic protein family signature. Length = 52 Score = 55.6 bits (134), Expect = 4e-15 Identities = 18/43 (41%), Positives = 29/43 (67%) Query: 1 MIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVFTAYES 43 ++ ++++C+T ++ +TRK LCE+ R G EVA F AYES Sbjct: 8 LVWCVLIVCLTLLIFTYLTRKSLCEIRYRDGYREVAAFMAYES 50
>56KDTSANTIGN#Rickettsia 56kDa type-specific antigen protein signature. Length = 533 Score = 29.2 bits (65), Expect = 0.022 Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 18/120 (15%) Query: 157 IAEELGISRAQFD-----QFLRMMQGGAQFGGGYQQQSGGGNWQQAQRGPTLEDACNVLG 211 EEL R FD F+ + QQQ G G QQAQ T ++A Sbjct: 310 TLEEL---RDSFDGYINNAFVNQIHLNFVMPPQAQQQQGQGQQQQAQ--ATAQEAVAAAA 364 Query: 212 VKPTDDATTIKRAYRKLMS-EHHPDKLVAKGLPPEMMEMAKQKAQEIQ-QAYELIKQQKG 269 V+ + + I + Y+ L+ + H G+ M ++A Q+ ++ + Q KQQ+G Sbjct: 365 VRLLNGSDQIAQLYKDLVKLQRH------AGIRKAMEKLAAQQEEDAKNQGKGDCKQQQG 418
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 30.6 bits (69), Expect = 0.020 Identities = 19/103 (18%), Positives = 39/103 (37%), Gaps = 18/103 (17%) Query: 300 ILIADKQSVGERAVKGICGQVDGSVV------PGFIGLEAGQS-AFGDIYAWFGRVLGWP 352 + I++K+ + + + ++G + G I + + + G P Sbjct: 281 VRISEKEKIK---ITEMYTSINGELCKIDKAYSGEIVILQNEFLKLNSV---LGDTKLLP 334 Query: 353 L-EQLAAQHPELKEQINASQKQ----LLPALTEAWAQNPSLDH 390 E++ P L+ + S+ Q LL AL E +P L + Sbjct: 335 QRERIENPLPLLQTTVEPSKPQQREMLLDALLEISDSDPLLRY 377
>PF06580#Sensor histidine kinase Length = 349 Score = 31.4 bits (71), Expect = 0.008 Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 5/80 (6%) Query: 4 RRQPLIPGWLIPGISAATLVVAVALAAFLALWWNAPQGDWVAVWQDS-YLWHVVRFSFWQ 62 R GWL + L V A +W+ A ++W+ ++ Sbjct: 60 RSFIKRQGWLKLNMGQIILRVLPACVVIGMVWFVAN----TSIWRLLAFINTKPVAFTLP 115 Query: 63 AFLSALLSVVPAIFLARALY 82 LS + +VV F+ LY Sbjct: 116 LALSIIFNVVVVTFMWSLLY 135
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 184 bits (468), Expect = 7e-53 Identities = 94/284 (33%), Positives = 136/284 (47%), Gaps = 21/284 (7%) Query: 313 ALAGSTATTRVRFFWGTDIHGKPQVYGVHTGEGTPY-ENVRVANMQWNEQTQRYEFT--- 368 A+A ++ T + + G V + +G + V V +N T YE T Sbjct: 345 AVAKASGTVDLPMRLTNEARGNTTTLSVVSTDGVSVPKAVPVRMAAYNATTGLYEVTVPS 404 Query: 369 PAHDVDGPLITWTPENPEHGNVPGHTGN--DRPPLEQPTILVTPIPDGTDTYTTPPFPVP 426 + ++TWTP +P P T +P +TP+ T +P Sbjct: 405 TTAEAPPLILTWTPASPPGNQNPSSTTPVVPKPVPVYEGATLTPV-----KATPETYPGV 459 Query: 427 DPKEFNDYILVFPAGSGIKPIYVYLKEDPRKLPGVVTGHGVPLSPGTRWLDMSVSNNGNG 486 D I+ FPA SGIKPIYV + DPR +PG TG G P+ WL ++ G G Sbjct: 460 ITLP-EDLIIGFPADSGIKPIYVMFR-DPRDVPGAATGKGQPV--SGNWLG--AASQGEG 513 Query: 487 APIPAHIVDKLRGREFKTFDEFREALWLEVSQEPELIAQFSEINQLRISQGFTPFAPDEG 546 APIP+ I DKLRG+ FK + +FRE W+ V+ +PEL QF+ + + G P+ + Sbjct: 514 APIPSQIADKLRGKTFKNWRDFREQFWIAVANDPELSKQFNPGSLAVMRDGGAPYVRESE 573 Query: 547 HYIGPKETLKKFQIHHFIAIEYGGGVYDIDNLRIVTPRLHDEIH 590 G + K +IHH + + GGGVY++ NL VTP+ H EIH Sbjct: 574 Q-AGGRI---KIEIHHKVRVADGGGVYNMGNLVAVTPKRHIEIH 613
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 53.3 bits (127), Expect = 4e-12 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 4/64 (6%) Query: 1 MSQYPELIAQFSSGNQTRIKQGLIAKAPLEGWHYGTKEIVKKFHMYHRVAIEYSGGIYDI 60 ++ PEL QF+ G+ ++ G E G + K ++H+V + GG+Y++ Sbjct: 543 VANDPELSKQFNPGSLAVMRDGGAPYVR-ESEQAGGRI---KIEIHHKVRVADGGGVYNM 598 Query: 61 DNLR 64 NL Sbjct: 599 GNLV 602
>PF04605#Virulence-associated protein D (VapD) Length = 125 Score = 26.0 bits (57), Expect = 0.019 Identities = 13/34 (38%), Positives = 20/34 (58%) Query: 1 MYNFKDKIEDYTEREFIELLGEFTNPTGDNAQLK 34 Y+ K+ I+D ++F + L EFT T N +LK Sbjct: 88 QYSLKETIQDLCAKDFHQKLKEFTEKTPKNQKLK 121
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 49.4 bits (117), Expect = 4e-11 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 4/62 (6%) Query: 1 MSQYPELIAQFSTGNQTRIKQGLIAKAPLEGWHYGSKEIVKEFHIYHSVAIECGGEIYDI 60 ++ PEL QF+ G+ ++ G E G + + I+H V + GG +Y++ Sbjct: 543 VANDPELSKQFNPGSLAVMRDGGAPYVR-ESEQAGGRI---KIEIHHKVRVADGGGVYNM 598 Query: 61 DN 62 N Sbjct: 599 GN 600
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 54.0 bits (129), Expect = 2e-12 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 4/64 (6%) Query: 1 MSQYPELIAQFSSGNQTRIKQGLIAKAPLEGWHYGTKEIVKKFHIYHRVAIEYSGGIYDI 60 ++ PEL QF+ G+ ++ G E G + K I+H+V + GG+Y++ Sbjct: 543 VANDPELSKQFNPGSLAVMRDGGAPYVR-ESEQAGGRI---KIEIHHKVRVADGGGVYNM 598 Query: 61 DNLR 64 NL Sbjct: 599 GNLV 602
>PF04605#Virulence-associated protein D (VapD) Length = 125 Score = 26.4 bits (58), Expect = 0.016 Identities = 13/34 (38%), Positives = 20/34 (58%) Query: 1 MYNFKDKIEDYTEREFIELLGEFTNPTGDNAQLK 34 Y+ K+ I+D ++F + L EFT T N +LK Sbjct: 88 QYSLKETIQDLCAKDFHQKLKEFTEKTPKNQKLK 121
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 34.8 bits (80), Expect = 0.001 Identities = 42/281 (14%), Positives = 91/281 (32%), Gaps = 32/281 (11%) Query: 26 DKVEAEQSLITVEGDKASMEVPSPQAGIVKEIKVSVGDKTQTGALIMIFDSADGAADAAP 85 + V +T G S E+ + IVKEI V G+ + G +++ + AD Sbjct: 81 EIVATANGKLTHSGR--SKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLK 138 Query: 86 AQA--------EEKKEAAPAAA-----PAAAAAKDVNVPDIGSDEVEVTEILVKVG-DKV 131 Q+ + + + + P + ++ +EV L+K Sbjct: 139 TQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTW 198 Query: 132 EAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDKVSTGSLIMVFEVAGEAGAAAPAAK 191 + ++ + DK E A + ++ +K + A + Sbjct: 199 QNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHK-QAIAKHAVLEQ 257 Query: 192 QEAAPAAASAPAAGVKEVNVPDIGGDEV-------------EVTEVMVKVGDKVAA-EQS 237 + A + ++ + E+ + + + D + Sbjct: 258 ENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLE 317 Query: 238 LITVEGDKASMEVPAPFAGVVKELKVN-VGDKVKTGSLIMI 277 L E + + + AP + V++LKV+ G V T +M+ Sbjct: 318 LAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMV 358 Score = 29.8 bits (67), Expect = 0.035 Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 3/95 (3%) Query: 230 DKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEGAAPAAAP 289 + VA +T G S E+ +VKE+ V G+ V+ G +++ GA A Sbjct: 81 EIVATANGKLTHSGR--SKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAE-ADTL 137 Query: 290 AKQEAAAPAPAAKAEAPAAAPAAKAEGKSEFAEND 324 Q + A + + + + E D Sbjct: 138 KTQSSLLQARLEQTRYQILSRSIELNKLPELKLPD 172
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 789 bits (2038), Expect = 0.0 Identities = 265/850 (31%), Positives = 423/850 (49%), Gaps = 38/850 (4%) Query: 15 RIATFCALLYCNGAFCAELVEYDHTFLMGQNASNIDLSRYSEGNPAIPGVYDVSVYVNDQ 74 R+ CA AE + ++ FL + DLSR+ G PG Y V +Y+N+ Sbjct: 29 RLFVACAFAAQAPLSSAE-LYFNPRFLADDPQAVADLSRFENGQELPPGTYRVDIYLNNG 87 Query: 75 PVINQSITFVAIEGKKNAQACITLKNLLQFHINSPDINSEKAVLLARDEALGNCLNLTEI 134 + + +TF + ++ C+T L +N+ + LLA D C+ LT + Sbjct: 88 YMATRDVTFNTGDSEQGIVPCLTRAQLASMGLNTASV--SGMNLLADDA----CVPLTSM 141 Query: 135 IPQASVRYDVNDQRLDIDVPQAWVMKNYQNYVDPSLWENGINAAMLSYNLNGYHSETP-G 193 I A+ + DV QRL++ +PQA++ + Y+ P LW+ GINA +L+YN +G + G Sbjct: 142 IHDATAQLDVGQQRLNLTIPQAFMSNRARGYIPPELWDPGINAGLLNYNFSGNSVQNRIG 201 Query: 194 RKNDSIYAAFNGGMNLGAWRLRASGNYNWM-----TDSGGNYDFKNRYIQRDIASLRSQF 248 + Y G+N+GAWRLR + +++ + S + N +++RDI LRS+ Sbjct: 202 GNSHYAYLNLQSGLNIGAWRLRDNTTWSYNSSDSSSGSKNKWQHINTWLERDIIPLRSRL 261 Query: 249 IIGESYTTGETFDSVSIRGIRLYSDSRMLPPTLASFAPIIHGVANTNAKVTITQGGYKIY 308 +G+ YT G+ FD ++ RG +L SD MLP + FAP+IHG+A A+VTI Q GY IY Sbjct: 262 TLGDGYTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQVTIKQNGYDIY 321 Query: 309 ETTVPPGAFVIDDLSPSGYGSDLIVTIEESDGSKRTFSQPFSSVVQMLRPGVGRWDISGG 368 +TVPPG F I+D+ +G DL VTI+E+DGS + F+ P+SSV + R G R+ I+ G Sbjct: 322 NSTVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQREGHTRYSITAG 381 Query: 369 QVLKDD-IQDEPNLFQASYYYGLNNYLTGYTGIQITDNNYTAGLLGLGLNT-SVGAFSFD 426 + + Q++P FQ++ +GL T Y G Q+ D Y A G+G N ++GA S D Sbjct: 382 EYRSGNAQQEKPRFFQSTLLHGLPAGWTIYGGTQLAD-RYRAFNFGIGKNMGALGALSVD 440 Query: 427 VTHSNVRIPDDKTYQGQSYRVSWNKLFEETSTSLNIAAYRYSTQNYLGLNDALTLIDEVK 486 +T +N +PDD + GQS R +NK E+ T++ + YRYST Y D Sbjct: 441 MTQANSTLPDDSQHDGQSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFADTTYSRMNGY 500 Query: 487 HPE-----QDLEPKSMRNYSRM---KNQVTVSINQPLKFEKKDYGSFYLSGSWSDYWASG 538 + E ++PK Y+ + ++ +++ Q L + YLSGS YW + Sbjct: 501 NIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQL----GRTSTLYLSGSHQTYWGTS 556 Query: 539 QNRSNYSIGYSNSASWGSYSISAQRSWNE-DGDADDSVYLSFTIPIEKLLGTEQRTS-GF 596 + G + + ++++S + N D + L+ IP L ++ ++ Sbjct: 557 NVDEQFQAGLNTAFEDINWTLSYSLTKNAWQKGRDQMLALNVNIPFSHWLRSDSKSQWRH 616 Query: 597 QSIDTQMSSDFKGNNQLNVSSSGY-NDNARVSYSVNTGYTMNKASKDLSYVGGYASYESP 655 S MS D G G ++ +SYSV TGY S +Y Sbjct: 617 ASASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGDGNSGSTGYATLNYRGG 676 Query: 656 WGTLAGSVSANSDNSRQVSLSTDGGFVLHSGGLTFSNDSFSDSDTLAVVQAPGAQGARIN 715 +G S + D +Q+ GG + H+ G+T +DT+ +V+APGA+ A++ Sbjct: 677 YGNANIGYSHSDDI-KQLYYGVSGGVLAHANGVTLGQPL---NDTVVLVKAPGAKDAKVE 732 Query: 716 YGNST-IDRWGYGVTSALSPYHENRIALDINDLENDVELKSTSAVAVPRQGSVVFADFET 774 D GY V + Y ENR+ALD N L ++V+L + A VP +G++V A+F+ Sbjct: 733 NQTGVRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVPTRGAIVRAEFKA 792 Query: 775 VQGQSAIMNITRSDGKNIPFAADIYDDQGNVIGNVGQGGQAFVRGIEQQGNINIKWLEES 834 G +M +T + K +PF A + + G V GQ ++ G+ G + +KW EE Sbjct: 793 RVGIKLLMTLTH-NNKPLPFGAMVTSESSQSSGIVADNGQVYLSGMPLAGKVQVKWGEEE 851 Query: 835 KPVSCLAHYQ 844 C+A+YQ Sbjct: 852 NA-HCVANYQ 860
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 699 bits (1805), Expect = 0.0 Identities = 302/848 (35%), Positives = 454/848 (53%), Gaps = 43/848 (5%) Query: 17 ALSAVYSLSYARDEFNLRILELDSPLENTQVLEDFVNNNNLTPGVYLTSVMWGQEYLDKR 76 A +A LS A FN R L D + L F N L PG Y + Y+ R Sbjct: 35 AFAAQAPLSSAELYFNPRFLADDP--QAVADLSRFENGQELPPGTYRVDIYLNNGYMATR 92 Query: 77 NITFILSSDKKRLIPRFTKADLREFGLKVDDIPALQVMDDDTEFGDIAQIIDGARYDFQL 136 ++TF ++ ++P T+A L GL + + ++ DD + +I A + Sbjct: 93 DVTFNTGDSEQGIVPCLTRAQLASMGLNTASVSGMNLLADDACV-PLTSMIHDATAQLDV 151 Query: 137 DSQTLCLRIPQIYQNARAAGSISPKYWSDGESAVWLSYYASGSRQNSDGDNLNSN-WLNL 195 Q L L IPQ + + RA G I P+ W G +A L+Y SG+ + + +LNL Sbjct: 152 GQQRLNLTIPQAFMSNRARGYIPPELWDPGINAGLLNYNFSGNSVQNRIGGNSHYAYLNL 211 Query: 196 NSGINLGVWRLRNNTVYS----------DSSWESISTSLQRDIKALRSQMEVGQTFTNGD 245 SG+N+G WRLR+NT +S + W+ I+T L+RDI LRS++ +G +T GD Sbjct: 212 QSGLNIGAWRLRDNTTWSYNSSDSSSGSKNKWQHINTWLERDIIPLRSRLTLGDGYTQGD 271 Query: 246 LFDSVQMTGIKLETDTSMLPDSEQGFAPVVRGIANSDAQVVIKQNGYVIYQTWVSAGPFE 305 +FD + G +L +D +MLPDS++GFAPV+ GIA AQV IKQNGY IY + V GPF Sbjct: 272 IFDGINFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQVTIKQNGYDIYNSTVPPGPFT 331 Query: 306 IKDLSQVTAGADLEVTIKETNGQEHSFIQASSTVPILQREGALKYSLATGKYRDNDNHAE 365 I D+ DL+VTIKE +G F S+VP+LQREG +YS+ G+YR + E Sbjct: 332 INDIYAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQREGHTRYSITAGEYRSGNAQQE 391 Query: 366 TPVFGVATAIYGLPYGITIYGGILGASIYHSGVTGIGADLGRLGSVSVDITAAETKFDDG 425 P F +T ++GLP G TIYGG A Y + GIG ++G LG++SVD+T A + D Sbjct: 392 KPRFFQSTLLHGLPAGWTIYGGTQLADRYRAFNFGIGKNMGALGALSVDMTQANSTLPDD 451 Query: 426 RDDATGLSWRAQYAKDFPDTDTTVTLASYRYSTSQFYTFQEALDQRD------------T 473 G S R Y K ++ T + L YRYSTS ++ F + R Sbjct: 452 SQH-DGQSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFADTTYSRMNGYNIETQDGVIQ 510 Query: 474 PDDKGIYSYRQTNNRRNRLQINLSQNIGRWGSVYLNGYQQDYWGMHGAERSIGMGYSTTW 533 K Y N+R +LQ+ ++Q +GR ++YL+G Q YWG + G +T + Sbjct: 511 VKPKFTDYYNLAYNKRGKLQLTVTQQLGRTSTLYLSGSHQTYWGTSNVDEQFQAGLNTAF 570 Query: 534 SNINWSVNYTLTKTPGMAG-EQQFSLTLNIPLSRWLPD--------SWAMYNVNRSDKSN 584 +INW+++Y+LTK G +Q +L +NIP S WL + A Y+++ Sbjct: 571 EDINWTLSYSLTKNAWQKGRDQMLALNVNIPFSHWLRSDSKSQWRHASASYSMSHDLNGR 630 Query: 585 TSHQLGIGGTALQDNNLSYNLQQSYT---DNNVGYDASMNGRYRSSVGEFGLGYSYDKNS 641 ++ G+ GT L+DNNLSY++Q Y D N G YR G +GYS+ + Sbjct: 631 MTNLAGVYGTLLEDNNLSYSVQTGYAGGGDGNSGSTGYATLNYRGGYGNANIGYSHSDDI 690 Query: 642 RQWNYSAQGAVVAHAHGVTLGQSVQDSFAIVHINEGANVKVQNAQGVYTDYWGNAIVPNM 701 +Q Y G V+AHA+GVTLGQ + D+ +V + KV+N GV TD+ G A++P Sbjct: 691 KQLYYGVSGGVLAHANGVTLGQPLNDTVVLVKAPGAKDAKVENQTGVRTDWRGYAVLPYA 750 Query: 702 TNYRHNAITVNTQG-HDSLDISDATQDVIPSKGAVVGVDFDARSGIRALLTLVHNKERVP 760 T YR N + ++T D++D+ +A +V+P++GA+V +F AR GI+ L+TL HN + +P Sbjct: 751 TEYRENRVALDTNTLADNVDLDNAVANVVPTRGAIVRAEFKARVGIKLLMTLTHNNKPLP 810 Query: 761 FGALLTL--GNSTAIVGEDGEVYITGVQESMTFTVQWGKEINQQCTGVVTVPEKYT-TGI 817 FGA++T S+ IV ++G+VY++G+ + V+WG+E N C +P + + Sbjct: 811 FGAMVTSESSQSSGIVADNGQVYLSGMPLAGKVQVKWGEEENAHCVANYQLPPESQQQLL 870 Query: 818 YKATMDCR 825 + + +CR Sbjct: 871 TQLSAECR 878
>FIMBRIALPAPE#Escherichia coli: P pili tip fibrillum papE protein signature. Length = 173 Score = 30.4 bits (68), Expect = 0.007 Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 7/88 (7%) Query: 255 STGVTGNNILNIESGSGMAEGVGLQILDSNN----NVMVFDTDYTPVQKTTLNQNVTIPL 310 S G TGN+IL + + +G+ + + +SNN N + + TP + T I L Sbjct: 85 SNGQTGNSILVPNTSTASGDGLLIYLYNSNNSGIGNAVTLGSQVTPGKITGTAPARKITL 144 Query: 311 KARY---IKMGSVKSGRVNSVATFEVYY 335 A+ M S+++G ++ AT Y Sbjct: 145 YAKLGYKGNMQSLQAGTFSATATLVASY 172
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 509 bits (1313), Expect = 0.0 Identities = 293/296 (98%), Positives = 294/296 (99%) Query: 1 MSGLPLISRRRLLTAMALSPLLWQMNTAHAAVIDPNRIVALEWLPVELLLALGIVPYGVA 60 MSGLPLISRRRLLTAMALSPLLWQMNTAHAA IDPNRIVALEWLPVELLLALGIVPYGVA Sbjct: 1 MSGLPLISRRRLLTAMALSPLLWQMNTAHAAAIDPNRIVALEWLPVELLLALGIVPYGVA 60 Query: 61 DTINYRLWVSEPPLPDSVIDVGLRTEPNLELLTEMKPSFMVWSAGYGPSPEMLARIAPGR 120 DTINYRLWVSEPPLPDSVIDVGLRTEPNLELLTEMKPSFMVWSAGYGPSPEMLARIAPGR Sbjct: 61 DTINYRLWVSEPPLPDSVIDVGLRTEPNLELLTEMKPSFMVWSAGYGPSPEMLARIAPGR 120 Query: 121 GFNFSDGKQPLAMARKSLTEMADLLNLQSAAETHLAHYEDFIRSMKPRFVKRGARPLLLT 180 GFNFSDGKQPLAMARKSLTEMADLLNLQSAAETHLA YEDFIRSMKPRFVKRGARPLLLT Sbjct: 121 GFNFSDGKQPLAMARKSLTEMADLLNLQSAAETHLAQYEDFIRSMKPRFVKRGARPLLLT 180 Query: 181 TLIDPRHMLVFGPNSLFQEILDEYGIPNAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDH 240 TLIDPRHMLVFGPNSLFQEILDEYGIPNAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDH Sbjct: 181 TLIDPRHMLVFGPNSLFQEILDEYGIPNAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDH 240 Query: 241 DNSKDMDALMATPLWQAMPFVRAGRFQRVPAVWFYGATLSAMHFVRILDNAIGGKA 296 DNSKDMDALMATPLWQAMPFVRAGRFQRVPAVWFYGATLSAMHFVR+LDNAIGGKA Sbjct: 241 DNSKDMDALMATPLWQAMPFVRAGRFQRVPAVWFYGATLSAMHFVRVLDNAIGGKA 296
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 37.7 bits (87), Expect = 2e-04 Identities = 46/283 (16%), Positives = 94/283 (33%), Gaps = 19/283 (6%) Query: 706 KAYFEELQAELGDEMEHYSRLFKSAEEIREEIEHIKDVLFSFDTENAEIFTDQINQIQDR 765 +A +L+ L M + + + E + + Sbjct: 119 EARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKI 178 Query: 766 ETALALKNAL-ADARSLYNLIRLQGNTEFLQALDFNKLNILYREASRRLDLLNLKADLEQ 824 +T A K AL A L + N + L + R +L+ LE Sbjct: 179 KTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKA--DLEKALEG 236 Query: 825 GVDLSGLLNRALEEVIFEFHKVGEEELVLADELKETLRRTREALAANFDQQDPQFVSLKD 884 ++ S + ++ + E + E ++ E A +A + + +L+ Sbjct: 237 AMNFSTADSAKIKTLEAEKAAL-EARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEA 295 Query: 885 ELERLFKKKKLSEVTQQEMV-------ANIGTLNKIHGRIKELNRQNNLLRQKYRGDVKY 937 E L + ++ +Q + L H +++E N+ + RQ R D+ Sbjct: 296 EKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDA 355 Query: 938 ART--------HKRLRERGGLSEPERKIFEALLSVKLDADEKV 972 +R H++L E+ +SE R+ L +A ++V Sbjct: 356 SREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQV 398
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 62.6 bits (152), Expect = 5e-12 Identities = 29/247 (11%), Positives = 73/247 (29%), Gaps = 23/247 (9%) Query: 487 TLNLNSLWSKLGTFSISYNDDRRYNSHYYTADYYQSVYSGTFGSLGLRAGIQRYNNGDSS 546 L + + T +S + Y + +Q+ + F + N Sbjct: 530 QLTVTQQLGRTSTLYLSG-SHQTYWGTSNVDEQFQAGLNTAFEDINWTLSYSLTKNAWQK 588 Query: 547 ANTGKYIALDLSLPLGNWFSAGMTHQNGYTMANLSARKQFDEGT------------IRTV 594 + +AL++++P +W + Q + A+ S + + Sbjct: 589 -GRDQMLALNVNIPFSHWLRSDSKSQWRHASASYSMSHDLNGRMTNLAGVYGTLLEDNNL 647 Query: 595 GANLSRAISGDTGDDKTLSGGAYAQFDARYASGTLNVNSAADGYINTNLTANGSVGWQGK 654 ++ +G + +G A + Y + + S +D +G V Sbjct: 648 SYSVQTGYAGGGDGNSGSTGYATLNYRGGYGNANIGY-SHSDDIKQLYYGVSGGVLAHAN 706 Query: 655 NIAASGRTDGNAGVIFDTGLEN---DGQISAKINGRIFPLNGKRNYLPLSPYGRYEVELQ 711 + + ++ G ++ + Q + + R G + Y V L Sbjct: 707 GVTLGQPLNDTVVLVKAPGAKDAKVENQTGVRTDWR-----GYAVLPYATEYRENRVALD 761 Query: 712 NSKNSLD 718 + + + Sbjct: 762 TNTLADN 768
>INTIMIN#Intimin signature. Length = 939 Score = 545 bits (1405), Expect = e-177 Identities = 235/832 (28%), Positives = 357/832 (42%), Gaps = 78/832 (9%) Query: 41 PVMAARAQHAVQPRLSMENTTVTANNNVEKNVASLAANAGTFLSSQPDS-----DATRNF 95 P++AA +L+ + VT +N + + AA L SQ S D ++ Sbjct: 131 PLVAAGGVAGHTNKLTKMSPDVTKSNMTDDKALNYAAQQAASLGSQLQSRSLNGDYAKDT 190 Query: 96 ITGMATAKANQEIQEWLGKYGTARVKLNVDKNFSLKDSSLEMLYPIYDTPTNMLFTQGAI 155 G+A +A+ ++Q WL YGTA V L NF SSL+ L P YD+ + F Q Sbjct: 191 ALGIAGNQASSQLQAWLQHYGTAEVNLQSGNNFD--GSSLDFLLPFYDSEKMLAFGQVGA 248 Query: 156 HRTDDRTQSNIGFGWRHFSENDWMAGVNTFIDHDLSRSHTRIGVGAEYWRDYLKLSANGY 215 D R +N+G G R F + M G N FID D S +TR+G+G EYWRDY K S NGY Sbjct: 249 RYIDSRFTANLGAGQRFF-LPENMLGYNVFIDQDFSGDNTRLGIGGEYWRDYFKSSVNGY 307 Query: 216 IRASGWKKSPDVEDYQERPANGWDIRAEGYLPAWPQLGASLMYEQYYGDEVGLFGKDKRQ 275 R SGW +S + +DY ERPANG+DIR GYLP++P LGA LMYEQYYGD V LF DK Q Sbjct: 308 FRMSGWHESYNKKDYDERPANGFDIRFNGYLPSYPALGAKLMYEQYYGDNVALFNSDKLQ 367 Query: 276 KDPHAITAEVNYTPVPLLTLSAGHKQGKSGENDTRFGLEVNYRIGEPLEKQLDTDSIRER 335 +P A T VNYTP+PL+T+ ++ G END + ++ Y+ +P +Q++ + E Sbjct: 368 SNPGAATVGVNYTPIPLVTMGIDYRHGTGNENDLLYSMQFRYQFDKPWSQQIEPQYVNEL 427 Query: 336 RMLAGSRYDLVERNNNIVLEYRKSEVIRIALPERIEGKGGQTVSLGLVVSKATHGLKNVQ 395 R L+GSRYDLV+RNNNI+LEY+K +++ + +P I G T + L+V K+ +GL + Sbjct: 428 RTLSGSRYDLVQRNNNIILEYKKQDILSLNIPHDINGTERSTQKIQLIV-KSKYGLDRIV 486 Query: 396 WEAPSLLAAGGKITGQG----NQWQVTLPAYQAGKDNYYAISAIAYDNKGNASKRVQTEV 451 W+ +L + GG+I G +Q LPAY G N Y ++A AYD GN+S V + Sbjct: 487 WDDSALRSQGGQIQHSGSQSAQDYQAILPAYVQGGSNVYKVTARAYDRNGNSSNNVLLTI 546 Query: 452 VISGAGMSADRTALTLDGQSRIQMLANGNEQKPLVLSLR----DAEGQPVTGMKDQIKTE 507 + G D+ +T + A+G E +++ PV+ Sbjct: 547 TVLSNGQVVDQVGVTDFTADKTSAKADGTEAITYTATVKKNGVAQANVPVS--------- 597 Query: 508 LTFKPAGNIVTRTLKATKSQAKPTLGEFTETESGVYQSVFTTGTQSGEATITVSVDDMSK 567 NIV+ T + + A SG + G+ ++ +M+ Sbjct: 598 ------FNIVSGTAVLSANSAN-------TNGSGKATVTLKSDK-PGQVVVSAKTAEMTS 643 Query: 568 TVTAELRATMMDVANSTLSANEPSGDVVADGQQAYTLTLTAVDSEGNPVTGEASRLRLVP 627 + A + S VA+GQ A T T+ V PV+ + Sbjct: 644 ALNANAVIFVDQTKASITEIKADKTTAVANGQDAITYTVK-VMKGDKPVSNQEVTF---- 698 Query: 628 QDTNGVTVGAIS--EIKPGVYSATVSSTRAGNVVVRAFSEQYQLGTLQQTLKFVAGP--- 682 T + + G T++ST G +V A + ++F Sbjct: 699 -TTTLGKLSNSTEKTDTNGYAKVTLTSTTPGKSLVSARVSDVAVDVKAPEVEFFTTLTID 757 Query: 683 ----------LDAAHSSITLNPDK---PVVGGTVTAIWTAKDANDNPVTGLNPDAPSLSG 729 + ++ L + GG W + + V + +L Sbjct: 758 DGNIEIVGTGVKGKLPTVWLQYGQVNLKASGGNGKYTWRSANPAIASVDA-SSGQVTLKE 816 Query: 730 AAAAGSTASGWTDNGDGTWTAQISLGTTAGELDVMPKLNGQDAAANAAKVTVVADALSSN 789 + +DN T+T T L V L S+ Sbjct: 817 KGTTTISVIS-SDNQTATYTIA-----TPNSLIVPNMSKRVTYNDAVNTCKNFGGKLPSS 870 Query: 790 QSKV-------SVAEDHVKAGESTTVTLVAKDAHGNAISGLSLSASLTGTAS 834 Q+++ A + S T+ + +A SG++ + L Sbjct: 871 QNELENVFKAWGAANKYEYYKSSQTIISWVQQTAQDAKSGVASTYDLVKQNP 922 Score = 71.3 bits (174), Expect = 2e-14 Identities = 73/347 (21%), Positives = 114/347 (32%), Gaps = 46/347 (13%) Query: 905 KTTTELTFTVK----DAYGNPVTGLKPDAPVFSGAASTGSERPSAGNWTEKGNGVYVSTL 960 T TVK PV+ + SG A SA + G+G TL Sbjct: 575 TEAITYTATVKKNGVAQANVPVSFN-----IVSGTAV-----LSANSANTNGSGKATVTL 624 Query: 961 TLGSAAGQLSVMPRVNGQNAVAQPLVLNVAGDASKAEIRDMTVKVNNQLANGQSANQITL 1020 + +A+ V+ V D +KA I ++ +ANGQ A IT Sbjct: 625 KSDKPGQVVVSAKTAEMTSALNANAVIFV--DQTKASITEIKADKTTAVANGQDA--ITY 680 Query: 1021 TV-VDSYGNPLQGQEVTLTLPQGVTSKTGNTVTTNAAGKVDIELMSTVAGEHNISASVNG 1079 TV V P+ QEVT T G S + T T+ G + L ST G+ +SA V+ Sbjct: 681 TVKVMKGDKPVSNQEVTFTTTLGKLSNS--TEKTDTNGYAKVTLTSTTPGKSLVSARVSD 738 Query: 1080 AQ---KTVTVKFNADASTGQANLQVDTAVQKVANGKDAFTLTANVEDKNGN-PVPGSLVT 1135 K V+F + N+++ V G T ++ N G Sbjct: 739 VAVDVKAPEVEFFTTLTIDDGNIEI------VGTGVKGKLPTVWLQYGQVNLKASGGNGK 792 Query: 1136 FNLPRGVKPLTGDNVWVKANDEGKAELQVVSVTAGTYEITASAGNDQPSNAQSVTFVADK 1195 + N + + D QV GT I+ + ++Q T+ Sbjct: 793 YT-------WRSANPAIASVDASSG--QVTLKEKGTTTISVISSDNQT-----ATYTIAT 838 Query: 1196 TTATISSIEVIGNRAVADGKTKQTYKVTVTDANNNLLKDSEVTLTAS 1242 + I + D ++ N L++ A+ Sbjct: 839 PNSLI-VPNMSKRVTYNDAVNTCKNFGGKLPSSQNELENVFKAWGAA 884 Score = 50.5 bits (120), Expect = 5e-08 Identities = 45/248 (18%), Positives = 79/248 (31%), Gaps = 23/248 (9%) Query: 1168 TAGTYEITASA----GNDQPSNAQSVTFVADKTTAT---ISSIEVIGNRAVADGKTKQTY 1220 + Y++TA A GN + ++T +++ ++ A ADG TY Sbjct: 521 GSNVYKVTARAYDRNGNSSNNVLLTITVLSNGQVVDQVGVTDFTADKTSAKADGTEAITY 580 Query: 1221 KVTVTDANNNLLKDSEVTLTASPENLVLTPNGTATTNEQGQAIFTATTTVAATYTLTAKV 1280 TV S + +A TN G+A T + ++AK Sbjct: 581 TATVKKNGVAQANVPVSFNIVS--GTAVLSANSANTNGSGKATVTLKSDKPGQVVVSAK- 637 Query: 1281 EQADGQESTKTAESKFVADDKNAELAATSDVHSLVADGVTTATLTVTLFSANNPVGGTMW 1340 A+ + FV K + +D + VA+G T TV + + PV Sbjct: 638 -TAEMTSALNANAVIFVDQTKASITEIKADKTTAVANGQDAITYTVKVMKGDKPVSNQEV 696 Query: 1341 VDIEA--PEGVTEADYQFLPSKNDHFASGKITRTFSTNKPGTYTFTFNSLTYGGYEMKPV 1398 + K D +G T ++ PG + ++ ++K Sbjct: 697 TFTTTLGKLSNSTE-------KTD--TNGYAKVTLTSTTPGKSLVS-ARVSDVAVDVKAP 746 Query: 1399 TVTINAVP 1406 V Sbjct: 747 EVEFFTTL 754 Score = 47.4 bits (112), Expect = 5e-07 Identities = 58/375 (15%), Positives = 108/375 (28%), Gaps = 56/375 (14%) Query: 779 VTVVADALSSNQSKV---SVAEDHVKAGESTTVTLVA------KDAHGNAISGLSLSASL 829 +TV+++ +Q V + + KA + +T A +S +S Sbjct: 546 ITVLSNGQVVDQVGVTDFTADKTSAKADGTEAITYTATVKKNGVAQANVPVSFNIVSG-- 603 Query: 830 TGTASEGATVSSWTEKGDGSYVAT--LTTGGKTGELRVMPLFNGQPAATEAAQLTVIAGE 887 A +S+ + +GS AT L + + A A + + Sbjct: 604 ------TAVLSANSANTNGSGKATVTLKSDKPGQVVVSAKTAEMTSALN--ANAVIFVDQ 655 Query: 888 MSSANSTLVADNKTPTVKTTTELTFTVKDAY-GNPVTGLKPDAPVFSGAASTGSERPSAG 946 ++ + + AD T +T+TVK PV+ + +T + S Sbjct: 656 TKASITEIKADKTTAVANGQDAITYTVKVMKGDKPVSNQEV-------TFTTTLGKLSNS 708 Query: 947 NWTEKGNGVYVSTLTLGSAAGQLSVMPRVNGQN-AVAQPLVLNVAG---DASKAEIRDMT 1002 NG TLT + G+ V RV+ V P V D EI Sbjct: 709 TEKTDTNGYAKVTLT-STTPGKSLVSARVSDVAVDVKAPEVEFFTTLTIDDGNIEI---- 763 Query: 1003 VKVNNQLANGQSANQITLTV-VDSYGNPLQGQEVTLTLPQGVTSKTGNTVTTNAAGKVDI 1061 + G T+ + G T ++ ++G+V + Sbjct: 764 ------VGTGVKGKLPTVWLQYGQVNLKASGGNGKYTW---RSANPAIASVDASSGQVTL 814 Query: 1062 ELMSTVAGEHNISASVNGAQKTVTVKFNADASTGQANLQVDTAVQKVANGKDAFTLTANV 1121 + G IS + Q T + + V + + Sbjct: 815 K----EKGTTTISVISSDNQ---TATYTIATPNSLIVPNMSKRVT-YNDAVNTCKNFGGK 866 Query: 1122 EDKNGNPVPGSLVTF 1136 + N + + Sbjct: 867 LPSSQNELENVFKAW 881
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 28.4 bits (63), Expect = 0.025 Identities = 12/42 (28%), Positives = 19/42 (45%) Query: 3 RQKILQQLLEWIECNLEHPISIEDIAQKSGYSRRNIQLLFRN 44 RQ IL L S+ +IA+ +G +R I F++ Sbjct: 13 RQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKD 54
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 116 bits (291), Expect = 9e-29 Identities = 111/509 (21%), Positives = 186/509 (36%), Gaps = 73/509 (14%) Query: 317 LDINLSDSSVWKGKVSGAGDASVSLQNGSVWNVTASSTVDALAVKDSTVNITKATVNTGT 376 LD+ L+ + W G S+S+ N W +T +S V AL + + G Sbjct: 413 LDVALASQARWTGATRAVD--SLSIDNA-TWVMTDNSNVGALRLASDGSVDFQQPAEAGR 469 Query: 377 FA-------SQNGTLI----VDASSENTLDISGKASGDLSVY---------SAGSLDLIN 416 F + +G D + L + ASG ++ SA +L L+ Sbjct: 470 FKVLTVNTLAGSGLFRMNVFADLGLSDKLVVMQDASGQHRLWVRNSGSEPASANTLLLVQ 529 Query: 417 EQ----TAFISTGKDSTLKATGTTEGGLYQYDLTQGADGNFYFVKNTHK----------- 461 F KD G + G Y+Y L +G + V Sbjct: 530 TPLGSAATFTLANKD------GKVDIGTYRYRLAANGNGQWSLVGAKAPPAPKPAPQPGP 583 Query: 462 -----------------------ASNASSVIQAMA-AAPANVANLQADTLSARQDAVRLS 497 ++ A++ + + + +++ LS R +RL+ Sbjct: 584 QPPQPPQPQPEAPAPQPPAGRELSAAANAAVNTGGVGLASTLWYAESNALSKRLGELRLN 643 Query: 498 ENDKGGVWIQYFGGKQKHTTAGNASYDLDVNGVMLGGDTRFMTEDGSWLAGVAMSSAKGD 557 D GG W + F +Q+ +D V G LG D G W G +GD Sbjct: 644 P-DAGGAWGRGFAQRQQLDNRAGRRFDQKVAGFELGADHAVAVAGGRWHLGGLAGYTRGD 702 Query: 558 MT-TMQSKGDTEGYSFHAYLSRQYNNGIFIDTAAQFGHYSNTADVRLMNGGGTIKADFNT 616 T G T+ Y + ++G ++D + N V +G +K + T Sbjct: 703 RGFTGDGGGHTDSVHVGGYATYIADSGFYLDATLRASRLENDFKVAGSDGY-AVKGKYRT 761 Query: 617 NGFGAMVKGGYTWKDGNGLFIQPYAKLSALTLEGVDYQL-NGVDVHSDSYNSVLGEAGTR 675 +G GA ++ G + +G F++P A+L+ G Y+ NG+ V + +SVLG G Sbjct: 762 HGVGASLEAGRRFTHADGWFLEPQAELAVFRAGGGAYRAANGLRVRDEGGSSVLGRLGLE 821 Query: 676 VGYDFAVGNA-TVKPYLNLAALNEFSDGNKVRLGDESVNASIDGAAFRVGAGVQADITKN 734 VG + V+PY+ + L EF V + + G +G G+ A + + Sbjct: 822 VGKRIELAGGRQVQPYIKASVLQEFDGAGTVHTNGIAHRTELRGTRAELGLGMAAALGRG 881 Query: 735 MGAYASLDYTKGDDIENPLQGVVGINVTW 763 YAS +Y+KG + P G +W Sbjct: 882 HSLYASYEYSKGPKLAMPWTFHAGYRYSW 910
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 61.6 bits (149), Expect = 5e-14 Identities = 31/172 (18%), Positives = 58/172 (33%), Gaps = 15/172 (8%) Query: 10 RRRQLIDATLEAINEVGMHDATIAQIARHAGVSTGIISHYFRDKNGLLEATMRDITSQLR 69 R+ ++D L ++ G+ ++ +IA+ AGV+ G I +F+DK+ L S + Sbjct: 12 TRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIG 71 Query: 70 DAVLNRLHALPQGSAELRLQAIVGGNFDETQVSSAAMKAWLAFWASSMHQP-------ML 122 + L P L+ I+ + T V+ + + Sbjct: 72 ELELEYQAKFPGDPLS-VLREILIHVLEST-VTEERRRLLMEIIFHKCEFVGEMAVVQQA 129 Query: 123 YRLQQVSSRRLLSNLVSEFRRE---LPRQQAQEAGYGLAALIDGL---WLRA 168 R + S + + + A + I GL WL A Sbjct: 130 QRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFA 181
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 30.6 bits (69), Expect = 0.009 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%) Query: 6 TEENLLAFTTAARFGSFSKAAEELGLTTSAISYTIKRMETGLDVVLFTRS 55 E L+ A G+ KAA+ LGL + + I+ + G+ V +RS Sbjct: 436 MEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIREL--GVSVYRSSRS 483
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 431 bits (1111), Expect = e-155 Identities = 140/315 (44%), Positives = 201/315 (63%), Gaps = 3/315 (0%) Query: 1 MKELVVVAIGGNSIIKDNASQSIEHQAEAVKAVADTVLEMLASDYDIVLTHGNGPQVGLD 60 M + VV+A+GGN++ + S E + V+ A + E++A Y++V+THGNGPQVG Sbjct: 1 MGKRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSL 60 Query: 61 LRRAEIAHEREGLPLTPLANCVADTQGGIGYLIQQALNNRLARHG-EKKAVTVVTQVEVD 119 L + G+P P+ A +QG IGY+IQQAL N L + G EKK VT++TQ VD Sbjct: 61 LLHMDAGQATYGIPAQPMDVAGAMSQGWIGYMIQQALKNELRKRGMEKKVVTIITQTIVD 120 Query: 120 KNDPGFAHPTKPIGAFFSESQRDELQKANPDWRFVEDAGRGYRRVVASPEPKRIVEAPAI 179 KNDP F +PTKP+G F+ E L + W ED+GRG+RRVV SP+PK VEA I Sbjct: 121 KNDPAFQNPTKPVGPFYDEETAKRLAREK-GWIVKEDSGRGWRRVVPSPDPKGHVEAETI 179 Query: 180 KALIQQGFVVIGAGGGGIPVVRTEAGDYQSVDAVIDKDLSTALLAREIHADILVITTGVE 239 K L+++G +VI +GGGG+PV+ E G+ + V+AVIDKDL+ LA E++ADI +I T V Sbjct: 180 KKLVERGVIVIASGGGGVPVIL-EDGEIKGVEAVIDKDLAGEKLAEEVNADIFMILTDVN 238 Query: 240 KVCIHFGKPQQQALDRVDIATMTRYMQEGHFPPGSMLPKIIASLTFLEQGGKEVIITTPE 299 +++G ++Q L V + + +Y +EGHF GSM PK++A++ F+E GG+ II E Sbjct: 239 GAALYYGTEKEQWLREVKVEELRKYYEEGHFKAGSMGPKVLAAIRFIEWGGERAIIAHLE 298 Query: 300 CLPAALRGETGTHII 314 AL G+TGT ++ Sbjct: 299 KAVEALEGKTGTQVL 313
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 29.8 bits (67), Expect = 0.023 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%) Query: 65 LIHGKLPTRDE-LAAYKTKLKALRGLPANVRTV 96 + +LPT +E AYK ++ + G P +RT+ Sbjct: 303 MDRDQLPTEEEQFEAYKEVVQRMDGKPVVIRTL 335
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 28.0 bits (62), Expect = 0.028 Identities = 25/124 (20%), Positives = 54/124 (43%), Gaps = 20/124 (16%) Query: 82 FYANFN----LTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITI--- 134 F A+F ++ + + V+I P+V ++T +++ + Y F +++ Sbjct: 30 FSASFKGTDIQEFINTVSKNLNKTVIIDPSVRGTIT--VRSYDMLNEEQYYQFFLSVLDV 87 Query: 135 -GNNVWIGSHVVINP---------GITIGDNSVIGAG-SVVTKDIPPNVVAAGVPCRIIR 183 G V ++ V+ + + ++ G G VVT+ +P VAA ++R Sbjct: 88 YGFAVINMNNGVLKVVRSKDAKTAAVPVASDAAPGIGDEVVTRVVPLTNVAARDLAPLLR 147 Query: 184 EIND 187 ++ND Sbjct: 148 QLND 151
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 36.3 bits (84), Expect = 2e-04 Identities = 45/188 (23%), Positives = 71/188 (37%), Gaps = 14/188 (7%) Query: 4 LKNTNFWMFGLFFFFYFFI-MGAYFPFFPIWLHDINHISK--SDTGIIFAAISLFSLLFQ 60 +K + L + +G P P L D+ H + + GI+ A +L Sbjct: 1 MKPNRPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACA 60 Query: 61 PLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNA 120 P+ G LSD+ G R LL + + I P L + + +G IV GI A Sbjct: 61 PVLGALSDRFGRRPVLL---VSLAGAAVDYAIMATAPFL-WVLYIGRIVAGITGA--TGA 114 Query: 121 GAPAVEAFIEKVSRRSHFEFGRARMFGCVGWALCAS--IVGIMFTINNQFVFWLGSGCAL 178 A A A I R+ FG M C G+ + A + G+M + F+ + Sbjct: 115 VAGAYIADITDGDERARH-FG--FMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNG 171 Query: 179 ILAVLLFF 186 + + F Sbjct: 172 LNFLTGCF 179
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 57.2 bits (138), Expect = 4e-11 Identities = 86/414 (20%), Positives = 153/414 (36%), Gaps = 51/414 (12%) Query: 1 MSTRTPSSSSSRLMLTIGLCFLVALMEGLDLQAAGIAAGGIAQAFALDKMQMGWIFSAGI 60 M+T S+ + I LC L L+ ++ IA F W+ +A + Sbjct: 1 MNTSYSQSNLRHNQILIWLCILS-FFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFM 59 Query: 61 LGLLPGALVGGMLADRYGRKRILIGSVALFGLFSLATAIAWD-FPSLVFARLMTGVGLGA 119 L G V G L+D+ G KR+L+ + + S+ + F L+ AR + G G A Sbjct: 60 LTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAG-AA 118 Query: 120 ALPNLIA-LTSEAAGPRFRGTAVSLMYCGVPIGAALAATLGFAGANLAWQTVFWVGGVVP 178 A P L+ + + RG A L+ V +G + +G A+ + + ++ Sbjct: 119 AFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMIT 178 Query: 179 LILVPLLMRWLPESTVFAGEKQ--------AAPPLRALFAPETATATLLLWLCYFFTLLV 230 +I VP LM+ L + G LF + + L++ + F + V Sbjct: 179 IITVPFLMKLLKKEVRIKGHFDIKGIILMSVGIVFFMLFTTSYSISFLIVSVLSFL-IFV 237 Query: 231 VYMLINWLPLLLVEQGFQPSQAAGVMFA-LQMGAASGTLMLGALMDK------------- 276 ++ P + G GV+ + G +G + + M K Sbjct: 238 KHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSV 297 Query: 277 -LRPVTMSLLIYS---GMLAS------LLALGTVSSFNSMLLAGFV----------AGLF 316 + P TMS++I+ G+L +L +G S L A F+ +F Sbjct: 298 IIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVF 357 Query: 317 ATGGQSVLYALAPLFYSSQIRATGVGTAVA----VGRLGAMSGPLLAGKMLALG 366 GG S + SS ++ G ++ L +G + G +L++ Sbjct: 358 VLGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSIP 411
>TRNSINTIMINR#Translocated intimin receptor (Tir) signature. Length = 549 Score = 28.2 bits (62), Expect = 0.018 Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 2/56 (3%) Query: 11 LKAGLVTSKKAAKVERTAKKSRVQAREARAAVEENKKAQLERDKQLSEQQKQAALA 66 + +G + ++ + AK++ AR+ AVE N +AQ + Q + +Q++ L+ Sbjct: 308 IPSGELKDDIVEQIAQQAKEAGEVARQQ--AVESNAQAQQRYEDQHARRQEELQLS 361
>BINARYTOXINB#Binary toxin B family signature. Length = 764 Score = 30.0 bits (67), Expect = 0.015 Identities = 19/69 (27%), Positives = 30/69 (43%) Query: 254 DIVRELRERTELPIGAYQVSGEYAMIKFAALAGAIDEEKVVLESLGSIKRAGADLIFSYF 313 + EL + +L + QV G A F +D E L I+ A +IF+ Sbjct: 466 NQFLELEKTKQLRLDTDQVYGNIATYNFENGRVRVDTGSNWSEVLPQIQETTARIIFNGK 525 Query: 314 ALDLAEKKI 322 L+L E++I Sbjct: 526 DLNLVERRI 534
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 126 bits (318), Expect = 1e-31 Identities = 102/442 (23%), Positives = 170/442 (38%), Gaps = 59/442 (13%) Query: 605 TINGNGDVDNGTELDNSSVDNVVA---ATGNYKVRIDNATGAGAIADYKDKEIIYVNDKN 661 T+ G+G D D +V A+G +++ + N+ G+ + ++ Sbjct: 477 TLAGSGLFRMNVFADLGLSDKLVVMQDASGQHRLWVRNS---GSEPASANTLLLVQTPLG 533 Query: 662 SNATFSAAN---KADLGAYTYQAEQRGNTV------------------------------ 688 S ATF+ AN K D+G Y Y+ GN Sbjct: 534 SAATFTLANKDGKVDIGTYRYRLAANGNGQWSLVGAKAPPAPKPAPQPGPQPPQPPQPQP 593 Query: 689 ------VLQQMELTDYANMALSIP--SANTNIWNLEQDTVGTRLTNSRHGLADNGGAWVS 740 EL+ AN A++ + +W E + + RL R D GGAW Sbjct: 594 EAPAPQPPAGRELSAAANAAVNTGGVGLASTLWYAESNALSKRLGELRL-NPDAGGAWGR 652 Query: 741 YFGGNFNGDNGTIN-YDQDVNGIMVGVDTKIDGNNAKWIVGAAAGFAKGDMN---DRSGQ 796 F DN +DQ V G +G D + +W +G AG+ +GD D G Sbjct: 653 GFAQRQQLDNRAGRRFDQKVAGFELGADHAVAVAGGRWHLGGLAGYTRGDRGFTGDGGGH 712 Query: 797 VDQDSQTAYIYSSAHFANNVF-VDGSLSYSHFNNDLSATMSNGTYVDGSTNSDAWGFGLK 855 D Y + + A++ F +D +L S ND S+G V G + G L+ Sbjct: 713 TDSVHVGGY---ATYIADSGFYLDATLRASRLENDFKVAGSDGYAVKGKYRTHGVGASLE 769 Query: 856 AGYDFKLGDAGYVTPYGSVSGLFQSGDDYQLSNNMKVDGQSYDSMRYELGVDAGYTFTYS 915 AG F D ++ P ++ G Y+ +N ++V + S+ LG++ G + Sbjct: 770 AGRRFTHADGWFLEPQAELAVFRAGGGAYRAANGLRVRDEGGSSVLGRLGLEVGKRIELA 829 Query: 916 EDQALTPYFKLAYVYDDSNNDNDVNGDSIDNGTEGSAVRV--GLGTQFSFTKNFSAYTDA 973 + + PY K + + + + V+ + I + TE R GLG + + S Y Sbjct: 830 GGRQVQPYIKASVL-QEFDGAGTVHTNGIAHRTELRGTRAELGLGMAAALGRGHSLYASY 888 Query: 974 NYLGGGDVDQDWSANVGVKYTW 995 Y G + W+ + G +Y+W Sbjct: 889 EYSKGPKLAMPWTFHAGYRYSW 910
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 33.3 bits (76), Expect = 0.003 Identities = 21/96 (21%), Positives = 42/96 (43%), Gaps = 4/96 (4%) Query: 92 AAVGVVQQLRTDVMDAA--LRQPLSEFDTQ-PVGQVISRVTNDTEVIRDLYVTVVATVLR 148 A +G+ + +D A ++ L+E P G + + T ++ VV T+ Sbjct: 287 AGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFE 346 Query: 149 SAALVGAMLVAMFSLDWRMALVAIMIFPVVLVVMVI 184 + LV +++ +F + R L+ + PVVL+ Sbjct: 347 AIMLV-FLVMYLFLQNMRATLIPTIAVPVVLLGTFA 381
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 31.0 bits (70), Expect = 0.013 Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 24/137 (17%) Query: 245 IWLPLGLVIGLLAAMFVLRILRRIQSPHHRLQDAIENRDICVHYQPIVSLANGKIVGAEA 304 W+ L L+ G +A +LR R+ + + P++ G+I Sbjct: 228 PWMLLALLAGFMAFRVMLR------QEKRRVS-----FHRRLLHLPLI----GRIARGLN 272 Query: 305 LARWPQTDGSWLSPDSFIPLAQQTGLS-EPLTLLIIRSVFEDMGDWLRQHSQQHISINLE 363 AR+ +T + S +PL Q +S + ++ R D +R+ H + LE Sbjct: 273 TARYARTLSILNA--SAVPLLQAMRISGDVMSNDYARHRLSLATDAVREGVSLHKA--LE 328 Query: 364 STVLTSEKIPQLLREMI 380 T L P ++R MI Sbjct: 329 QTAL----FPPMMRHMI 341
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1369 bits (3544), Expect = 0.0 Identities = 802/1033 (77%), Positives = 916/1033 (88%), Gaps = 1/1033 (0%) Query: 1 MPNFFIDRPIFAWVIAIIIMLAGGLAILKLPVAQYPTIAPPAVTISASYPGADAKTVQDT 60 M NFFI RPIFAWV+AII+M+AG LAIL+LPVAQYPTIAPPAV++SA+YPGADA+TVQDT Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQNKLQLAMPLLPQ 120 VTQVIEQNMNGIDNLMYMSS SDS G+V ITLTF+SGTD DIAQVQVQNKLQLA PLLPQ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 121 EVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRTSGVGDVQLFGS 180 EVQQQG+SVEKSSSS+LMV G ++ + TQ+DISDYVA+N+KD +SR +GVGDVQLFG+ Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 181 QYAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQQLNASIIAQTRL 240 QYAMRIW++ + LNK++LTPVDVI +K QN Q+AAGQLGGTP + GQQLNASIIAQTR Sbjct: 181 QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240 Query: 241 TSTEEFGKILLKVNQDGSRVLLRDVAKIELGGENYDIIAEFNGQPASGLGIKLATGANAL 300 + EEFGK+ L+VN DGS V L+DVA++ELGGENY++IA NG+PA+GLGIKLATGANAL Sbjct: 241 KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300 Query: 301 DTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQ 360 DTA AI+A+LA+++PFFP G+K++YPYDTTPFV++SIHEVVKTL EAI+LVFLVMYLFLQ Sbjct: 301 DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360 Query: 361 NFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 N RATLIPTIAVPVVLLGTFA+LAAFG+SINTLTMFGMVLAIGLLVDDAIVVVENVERVM Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 Query: 421 AEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMAL 480 E+ LPPKEAT KSM QIQGALVGIAMVLSAVF+PMAFFGGSTGAIYRQFSITIVSAMAL Sbjct: 421 MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480 Query: 481 SVLVALILTPALCATMLKPIAKGDHGEGKKGFFGWFNRMFEKSTHHYTDSVGGILRSTGR 540 SVLVALILTPALCAT+LKP++ H E K GFFGWFN F+ S +HYT+SVG IL STGR Sbjct: 481 SVLVALILTPALCATLLKPVSAE-HHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539 Query: 541 YLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTMVQLPAGATQERTQKVLNEVTNYYLT 600 YL++Y +IV GM LF+RLPSSFLP+EDQGVF+TM+QLPAGATQERTQKVL++VT+YYL Sbjct: 540 YLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLK 599 Query: 601 KEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWADRPGEENKVEAITMRATRAFSQIKD 660 EK NVESVF VNGF F+G+ QN G+AFVSLK W +R G+EN EA+ RA +I+D Sbjct: 600 NEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRD 659 Query: 661 AMVFAFNLPAIVELGTATGFDFELIDQAGLGHEKLTQARNQLLAEAAKHPDMLTSVRPNG 720 V FN+PAIVELGTATGFDFELIDQAGLGH+ LTQARNQLL AA+HP L SVRPNG Sbjct: 660 GFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNG 719 Query: 721 LEDTPQFKIDIDQEKAQALGVSINDINTTLGAAWGGSYVNDFIDRGRVKKVYVMSEAKYR 780 LEDT QFK+++DQEKAQALGVS++DIN T+ A GG+YVNDFIDRGRVKK+YV ++AK+R Sbjct: 720 LEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFR 779 Query: 781 MLPDDIGDWYVRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEA 840 MLP+D+ YVR+A+G+MVPFSAF++S W YGSPRLERYNGLPSMEI G+AAPG S+G+A Sbjct: 780 MLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDA 839 Query: 841 MELMEQLASKLPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLAALYESWSIPFS 900 M LME LASKLP G+GYDWTGMSYQERLSGNQAP+L AIS +VVFLCLAALYESWSIP S Sbjct: 840 MALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVS 899 Query: 901 VMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGL 960 VMLVVPLG++G LLAAT NDVYF VGLLTTIGLSAKNAILIVEFAKDLM+KEGKG+ Sbjct: 900 VMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGV 959 Query: 961 IEATLDAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAIF 1020 +EATL AVRMRLRPILMTSLAFILGV+PL IS GAGSGAQNAVG GVMGGMV+AT+LAIF Sbjct: 960 VEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIF 1019 Query: 1021 FVPVFFVVVRRRF 1033 FVPVFFVV+RR F Sbjct: 1020 FVPVFFVVIRRCF 1032
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 44.0 bits (104), Expect = 7e-07 Identities = 33/212 (15%), Positives = 71/212 (33%), Gaps = 23/212 (10%) Query: 100 TYQAAYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQANAAVTA 159 + Y A +L + + Q+ Q +++ ++ L +Q + Sbjct: 256 EQENKYVEAVNELR--VYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGL 313 Query: 160 AKAAVETARINLAYTKVTSPISGRIGKSNV-TEGALVQNGQATALATVQQLDPIYVDVTQ 218 + + + +P+S ++ + V TEG +V + T + V + D + V Sbjct: 314 LTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAE-TLMVIVPEDDTLEVTALV 372 Query: 219 SSNDFLRLKQELA----------NGTLKQENGKAKVSLITSDGIKFPQDGTLEFSDVTVD 268 + D + KV I D I+ + G + ++++ Sbjct: 373 QNKDIGFINVGQNAIIKVEAFPYTRYGYLV---GKVKNINLDAIEDQRLGLVFNVIISIE 429 Query: 269 QTTGSITLRAIFPNPDHTLLPGMFVRARLEEG 300 + S + I L GM V A ++ G Sbjct: 430 ENCLSTGNKNIP------LSSGMAVTAEIKTG 455 Score = 34.0 bits (78), Expect = 9e-04 Identities = 24/125 (19%), Positives = 43/125 (34%), Gaps = 13/125 (10%) Query: 49 PLQITTELPGR-TSAYRIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPATYQAAYDS 107 ++I G+ T + R E++P + I+ + KEG + G L ++ +A Sbjct: 79 QVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEA---- 134 Query: 108 AKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQANAAVTAAKAAVETA 167 D K Q++ A+L RYQ L E ++ Sbjct: 135 ---DTLKTQSSLLQARLEQTRYQILS-----RSIELNKLPELKLPDEPYFQNVSEEEVLR 186 Query: 168 RINLA 172 +L Sbjct: 187 LTSLI 191
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 222 bits (567), Expect = 5e-76 Identities = 215/215 (100%), Positives = 215/215 (100%) Query: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60 Query: 61 EIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFV 120 EIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFV Sbjct: 61 EIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFV 120 Query: 121 GEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLF 180 GEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLF Sbjct: 121 GEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLF 180 Query: 181 APQSFDLKKEARDYVAILLEMYLLCPTLRNPATNE 215 APQSFDLKKEARDYVAILLEMYLLCPTLRNPATNE Sbjct: 181 APQSFDLKKEARDYVAILLEMYLLCPTLRNPATNE 215
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 31.0 bits (70), Expect = 0.029 Identities = 19/126 (15%), Positives = 40/126 (31%), Gaps = 8/126 (6%) Query: 28 QNTAFARASSNGDLPTKADLQAQLDSLNKQKDLSAQDKLVQQDLTDTLATLDKIDRVKEE 87 N RA L + + L L+ + A L++ ++ E Sbjct: 207 LNLDKKRAERLTVLARINRYENLSRVEKSR--LDDFSSLLHKQAIAKHAVLEQENKYVEA 264 Query: 88 TVQLRQKVAEAPEKMRQATAALTALSDVDNDEETRKILSALS-----LRQLETRVAQALD 142 +LR ++ + + +A V + +IL L + L +A+ + Sbjct: 265 VNELRVYKSQLEQIESEILSAKEEYQLVTQLFK-NEILDKLRQTTDNIGLLTLELAKNEE 323 Query: 143 DLQNAQ 148 Q + Sbjct: 324 RQQASV 329
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 38.1 bits (88), Expect = 1e-04 Identities = 40/251 (15%), Positives = 77/251 (30%), Gaps = 31/251 (12%) Query: 404 PLPETTSQVLAARQQLQRVQGATKAKKSEPAA----ATRARPVNNAALERLASVTDRVQA 459 P E +Q + + + P+ AR + A + A T Sbjct: 983 PEVEKRNQTVDTTN----ITTPNNIQADVPSVPSNNEEIARV-DEAPVPPPAPATPSETT 1037 Query: 460 RPVPSALEKAPAKKEAYRWKATTPVMQQKE--------VVATPKALKKA---LEHEKTPE 508 V ++ E AT Q +E V A + + A E ++T Sbjct: 1038 ETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQT 1097 Query: 509 LAAKLAA---------EAIERDPWAAQVSQLSLPKLVEQVALNAWKE-ESDNAVCLHLRS 558 K A E+ +V+ PK + + E +N ++++ Sbjct: 1098 TETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKE 1157 Query: 559 SQRHLNNRGAQQKLAEALST-FKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARES 617 Q N ++ A+ S+ + E T V N V P A + + + Sbjct: 1158 PQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSN 1217 Query: 618 IIADNNIQTLR 628 + + +++R Sbjct: 1218 KPKNRHRRSVR 1228
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 29.0 bits (65), Expect = 0.020 Identities = 11/43 (25%), Positives = 19/43 (44%) Query: 38 GQLAAVAIVTSDGNVYSAGDSDYRFALESISKVCTLALALEDV 80 G++ + + + G +A +D RF + S KV L V Sbjct: 38 GRVGMIEMDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARV 80
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 80.9 bits (199), Expect = 3e-20 Identities = 50/212 (23%), Positives = 82/212 (38%), Gaps = 7/212 (3%) Query: 3 KSVLITGCSSGIGLESALELKRQGFHVLAGCRKPDDVERMNS----MGFT--GVLIDLDS 56 K ITG + GIG A L QG H+ A P+ +E++ S D+ Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 57 PESVDRAADEVIALTDNCLYGIFNNAGFGMYGPLSTISRAQMEQQFSANFFGAHQLTMRL 116 ++D + + + N AG G + ++S + E FS N G + + Sbjct: 69 SAAIDEITARIEREMGP-IDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSV 127 Query: 117 LPAMLPHREGRIVMTSSVMGLISTPGRGAYAASKYALEAWSDALRMELRHSGIKVSLIEP 176 M+ R G IV S + AYA+SK A ++ L +EL I+ +++ P Sbjct: 128 SKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSP 187 Query: 177 GPIRTRFTDNVNQTQSDKPVENPGIAARFTLG 208 G T ++ ++ G F G Sbjct: 188 GSTETDMQWSLWADENGAEQVIKGSLETFKTG 219
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.3 bits (65), Expect = 0.014 Identities = 12/20 (60%), Positives = 13/20 (65%) Query: 41 LVGESGSGKSTLLAILAGLD 60 L G G GKSTL+ L GLD Sbjct: 601 LEGTGGIGKSTLINTLVGLD 620
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 56.3 bits (136), Expect = 1e-10 Identities = 39/163 (23%), Positives = 60/163 (36%), Gaps = 32/163 (19%) Query: 4 DLIIKNGTVILENEARVVDIAVKDGKIAAIG-------QD-----LGDAKDVMDASGLVV 51 D +I N ++ DI +KDG+IAAIG Q +G +V+ G +V Sbjct: 69 DTVITNALILDHWGIVKADIGLKDGRIAAIGKAGNPDMQPGVTIIVGPGTEVIAGEGKIV 128 Query: 52 SPGMVDAHTHISEPGRSHWEGYETGTRAAAKGGITTMIEMPLNQLPATVDRAS------- 104 + G +D+H H P + A G+T M+ PA A+ Sbjct: 129 TAGGMDSHIHFICPQQIE---------EALMSGLTCMLGGGTG--PAHGTLATTCTPGPW 177 Query: 105 -IELKFDAAKGKLTIDAAQLGGLVSYNIDRLHELDEVGVVGFK 146 I +AA ++ A G + L E+ G K Sbjct: 178 HIARMIEAADA-FPMNLAFAGKGNASLPGALVEMVLGGATSLK 219
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 383 bits (986), Expect = e-137 Identities = 125/310 (40%), Positives = 175/310 (56%), Gaps = 16/310 (5%) Query: 2 KTLVVALGGNALLQRGEALTAKNQYRNIASAVPALARL-ARSYRLAIVHGNGPQVGLLAL 60 K +V+ALGGNAL QRG+ + + N+ +A + AR Y + I HGNGPQVG L L Sbjct: 3 KRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLLL 62 Query: 61 QNLAWKE---VEPYPLDVLVAESQGMIGYMLAQGLSAQPQM----PPVTTVLTRIEVSPD 113 A + + P+DV A SQG IGYM+ Q L + + V T++T+ V + Sbjct: 63 HMDAGQATYGIPAQPMDVAGAMSQGWIGYMIQQALKNELRKRGMEKKVVTIITQTIVDKN 122 Query: 114 DPAFLQPEKFIGPVYQPEEQEALEAAYGWQMKRD-GKYLRRVVASPQPRKILDSEAIELL 172 DPAF P K +GP Y E + L GW +K D G+ RRVV SP P+ +++E I+ L Sbjct: 123 DPAFQNPTKPVGPFYDEETAKRLAREKGWIVKEDSGRGWRRVVPSPDPKGHVEAETIKKL 182 Query: 173 LKEGHVVICSGGGGVPVTEDG---AGSEAVIDKDLAAALLAEQINADGLVILTDADAVYE 229 ++ G +VI SGGGGVPV + G EAVIDKDLA LAE++NAD +ILTD + Sbjct: 183 VERGVIVIASGGGGVPVILEDGEIKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNGAAL 242 Query: 230 NWGTPQQRAIRHATPDELAPFAKAD----GSMGPKVTAVSGYVRSRGKPAWIGALSRIEE 285 +GT +++ +R +EL + + GSMGPKV A ++ G+ A I L + E Sbjct: 243 YYGTEKEQWLREVKVEELRKYYEEGHFKAGSMGPKVLAAIRFIEWGGERAIIAHLEKAVE 302 Query: 286 TLAGEAGTCI 295 L G+ GT + Sbjct: 303 ALEGKTGTQV 312
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.4 bits (66), Expect = 0.036 Identities = 16/150 (10%), Positives = 43/150 (28%), Gaps = 8/150 (5%) Query: 299 RSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEAMNDDFNTP----- 353 + ++ +L QAR R R + P E F ++ Sbjct: 133 EADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIK 192 Query: 354 EAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSGAQADDSEV 413 E +S + + + A + + + + + + + + F + Sbjct: 193 EQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSS---LLHKQAI 249 Query: 414 AEIEALIQQRLDARKAKDWAAADAARDRLN 443 A+ L Q+ + + +++ Sbjct: 250 AKHAVLEQENKYVEAVNELRVYKSQLEQIE 279
>HOKGEFTOXIC#Hok/Gef cell toxic protein family signature. Length = 52 Score = 57.5 bits (139), Expect = 8e-16 Identities = 18/50 (36%), Positives = 27/50 (54%) Query: 1 MLTKYALAAVIVLCLTVLGFTLLVGDSLCEFTVKERNIEFKAVLAYEPKK 50 + + V+++CLT+L FT L SLCE ++ E A +AYE K Sbjct: 3 LPRSSLVWCVLIVCLTLLIFTYLTRKSLCEIRYRDGYREVAAFMAYESGK 52
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 131 bits (331), Expect = 2e-39 Identities = 77/251 (30%), Positives = 128/251 (50%), Gaps = 12/251 (4%) Query: 16 RVAFVTGAGSGIGQMIALALASAGSRVVCFDLREDGGLKETVNNIEALGGQALYYTGDVR 75 ++AF+TGA GIG+ +A LAS G+ + D + K V++++A A + DVR Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEK-VVSSLKAEARHAEAFPADVR 67 Query: 76 ELRDLRAAVALAKTHFGRLDIAVNAAGIANANPALEMESEQWQRVIDINLTGVWNSCKAE 135 + + A + G +DI VN AG+ + E+W+ +N TGV+N+ ++ Sbjct: 68 DSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSV 127 Query: 136 AELMVENGGGSIINIASMSGIIVNRGLEQAHYNSSKAGVIHLSKSLAMEWVSKGIRVNSI 195 ++ M++ GSI+ + S + + A Y SSKA + +K L +E IR N + Sbjct: 128 SKYMMDRRSGSIVTVGSNPAGVPRTSM--AAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 196 SPGYTATPM--------NTRPEMVHQTRE-FESQTPIQRMAKVEEMAGPALFLASDAASF 246 SPG T T M N +++ + E F++ P++++AK ++A LFL S A Sbjct: 186 SPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGH 245 Query: 247 CTGVDLVVDGG 257 T +L VDGG Sbjct: 246 ITMHNLCVDGG 256
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 123 bits (310), Expect = 3e-36 Identities = 71/259 (27%), Positives = 115/259 (44%), Gaps = 6/259 (2%) Query: 3 RNFQGKTVVITGACRGIGAGIAERFARDGANLVMVSNAERVHETAEQLRQCYQADILSLE 62 + +GK ITGA +GIG +A A GA++ V E + + Sbjct: 4 KGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFP 63 Query: 63 VDVTDEAQVQALYEQAAARFGSIDVSIQNAGIITIDYFDRMPAADFEKVLAVNTTAVWLC 122 DV D A + + + G ID+ + AG++ + ++E +VN+T V+ Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 123 CREAAKYMVKQNHGCLINTSSGQGRQGFIYTPHYAASKMGVIGITQSLAHELAQWNITVN 182 R +KYM+ + G ++ S YA+SK + T+ L ELA++NI N Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCN 183 Query: 183 AFCPGIIESEMWDYNDRVWGEILSTDDKRYGKGELMAEWVEGIPMKRAGKPEDVAGLVAF 242 PG E++M +W + + G E + GIP+K+ KP D+A V F Sbjct: 184 IVSPGSTETDM---QWSLWADENGAEQVIKGSLE---TFKTGIPLKKLAKPSDIADAVLF 237 Query: 243 LASDDARYLTGQTINIDGG 261 L S A ++T + +DGG Sbjct: 238 LVSGQAGHITMHNLCVDGG 256
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 29.7 bits (67), Expect = 0.013 Identities = 10/19 (52%), Positives = 12/19 (63%) Query: 104 KAGIPVILINREIPVDDVA 122 G PV L +EI +DDVA Sbjct: 315 GIGTPVELWGKEIKIDDVA 333
>ENTSNTHTASED#Enterobactin synthetase component D signature. Length = 234 Score = 262 bits (670), Expect = 2e-91 Identities = 116/220 (52%), Positives = 146/220 (66%), Gaps = 10/220 (4%) Query: 4 MKTTHTSLPFAGHTLHFVEFDPASFREQDLLWLPHYAQLQHAGRKRKTEHLAGRIAAIYA 63 M T+H LPFAGH LH V+FD +SFRE DLLWLPH+ +L+ AGRKRK EHLAGRIAA++A Sbjct: 1 MLTSHFPLPFAGHRLHIVDFDASSFREHDLLWLPHHDRLRSAGRKRKAEHLAGRIAAVHA 60 Query: 64 LREYGYKCVPAIGELRQPVWPAGVYGSISHCGTTALAVVSRQPIGIDIEEIFSVQTAREL 123 LRE G + VP +G+ RQP+WP G++GSISHC TTALAV+SRQ IGIDIE+I S TA EL Sbjct: 61 LREVGVRTVPGMGDKRQPLWPDGLFGSISHCATTALAVISRQRIGIDIEKIMSQHTATEL 120 Query: 124 TDNIITPAEHERLAECGLTFSLALTLAFSAKESAFKA-SEIQTDAGFLDYQIGNCQHQQM 182 +II E + L L F LALTLAFSAKES +KA S+ T GF ++ + + Sbjct: 121 APSIIDSDERQILQASLLPFPLALTLAFSAKESVYKAFSDRVTLPGFNSAKVTSLTATHI 180 Query: 183 NI--------SGPNGDHIVQWLVRGNNVITLCLA-DKHPH 213 ++ + +W R N+VITL A + PH Sbjct: 181 SLHLLPAFAATMAERTVRTEWFQRDNSVITLVSAITRVPH 220
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 36.0 bits (83), Expect = 2e-04 Identities = 82/394 (20%), Positives = 146/394 (37%), Gaps = 38/394 (9%) Query: 27 FISIVSLGLLGVAVPVQIQIMTHSTWQV---GLSVTLTGGAMFVGLMVGGVLADRYERKK 83 + V +GL+ +P ++ + HS G+ + L F V G L+DR+ R+ Sbjct: 15 ALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRP 74 Query: 84 VILLARGTCGIGFIGLCLNALL--PEPSLLAIYLLGLWDGFFASLGVTALLAATPALVGR 141 V+L + G ++ + P L +Y+ + G + G A A + Sbjct: 75 VLL-------VSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVA-GAYIADITDG 126 Query: 142 ENLMQAGAITMLTVRLGSVISPMIGGLLLATGGVAWNYGLAAAGTFITLLPLLSLPALPP 201 + + G V P++GGL+ GG + + AA L L LP Sbjct: 127 DERARHFGFMSACFGFGMVAGPVLGGLM---GGFSPHAPFFAAAALNGLNFLTGCFLLPE 183 Query: 202 PPQPREHPLK----SLLAGFRFLLASPLVGGIALLGGLLTMAS----AVRVLYPALADNW 253 + PL+ + LA FR+ +V + + ++ + A+ V++ D + Sbjct: 184 SHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFG--EDRF 241 Query: 254 QMSAAQIGFLYAAIP-LGAAIGALTSGKLAHSVRPGLLMLLSTLG---AFLAIGLFGLMP 309 A IG AA L + A+ +G +A + ++L + ++ + Sbjct: 242 HWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGW 301 Query: 310 MWILGVVCLALFGWLSAVSSLLQYTMLQTQTPEAMLGRINGLWTAQNVTGDAIGAALLGG 369 M +V LA G ML Q E G++ G A +G L Sbjct: 302 MAFPIMVLLASGGIGMPALQ----AMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTA 357 Query: 370 LGAMMTPVASASASGFGLLIIGVLLLLVLVELRR 403 + A + + +G+ + L LL L LRR Sbjct: 358 IYA----ASITTWNGWAWIAGAALYLLCLPALRR 387
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 62.7 bits (152), Expect = 2e-13 Identities = 60/280 (21%), Positives = 100/280 (35%), Gaps = 35/280 (12%) Query: 40 HTLESQPQRIVSTSVTLTGSLLAIDAPVIASGATTPNNRVADDQGFLRQWSKVAKERKLQ 99 H P RIV+ LLA+ VAD + R W E L Sbjct: 29 HAAAIDPNRIVALEWLPVELLLALGIVPYG---------VADTINY-RLW---VSEPPLP 75 Query: 100 RLYIG-----EPSAEAVAAQMPDLILISATGGDSALALYDQLSTIAPTLIINYDDKS--- 151 I EP+ E + P ++ SA G S + L+ IAP N+ D Sbjct: 76 DSVIDVGLRTEPNLELLTEMKPSFMVWSAGYGPS----PEMLARIAPGRGFNFSDGKQPL 131 Query: 152 --WQSLLTQLGEITGHEKQAAERIAQFDKQLAAAKEQIKLPPQPVTAIVYTAAAHSANLW 209 + LT++ ++ + A +AQ++ + + K + + ++ Sbjct: 132 AMARKSLTEMADLLNLQSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVF 191 Query: 210 TPESAQGQMLEQLGFTLAKLPAGLNASQSQGKRHDIIQLGGENLAAGLNGESLFLFAGDQ 269 P S ++L++ G NA Q + + + LAA + + L + Sbjct: 192 GPNSLFQEILDEYGIP--------NAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNS 243 Query: 270 KDADAIYANPLLAHLPAVQNKQVYALGTETFRLDYYSAMQ 309 KD DA+ A PL +P V+ + + F SAM Sbjct: 244 KDMDALMATPLWQAMPFVRAGRFQRVPAVWFYGATLSAMH 283
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 444 bits (1142), Expect = e-161 Identities = 146/299 (48%), Positives = 195/299 (65%), Gaps = 18/299 (6%) Query: 1 MAIPKLQAYALPESHDIPQNKVDWAFEPQRAALLIHDMQDYFVSFWGENCPMMEQVIANI 60 MAIP +Q Y +P + D+PQNKV W +P RA LLIHDMQ+YFV + + ++ ANI Sbjct: 1 MAIPAIQPYQMPTASDMPQNKVSWVPDPNRAVLLIHDMQNYFVDAFTAGASPVTELSANI 60 Query: 61 AALRDYCKQHNIPVYYTAQPKEQSDEDRALLNDMWGPGLTRSPEQQKVVDRLTPDADDTV 120 L++ C Q IPV YTAQP Q+ +DRALL D WGPGL P ++K++ L P+ DD V Sbjct: 61 RKLKNQCVQLGIPVVYTAQPGSQNPDDRALLTDFWGPGLNSGPYEEKIITELAPEDDDLV 120 Query: 121 LVKWRYSAFHRSPLEQMLKESGRNQLIITGVYAHIGCMTTATDAFMRDIKPFMVADALAD 180 L KWRYSAF R+ L +M+++ GR+QLIITG+YAHIGC+ TA +AFM DIK F V DA+AD Sbjct: 121 LTKWRYSAFKRTNLLEMMRKEGRDQLIITGIYAHIGCLVTACEAFMEDIKAFFVGDAVAD 180 Query: 181 FSRDEHLMSLKYVAGRSGRVVMTEELL------PAPIPASKA-----------ALREVIL 223 FS ++H M+L+Y AGR VMT+ LL PA + + A +R+ I Sbjct: 181 FSLEKHQMALEYAAGRCAFTVMTDSLLDQLQNAPADVQKTSANTGKKNVFTCENIRKQIA 240 Query: 224 PLLDESDEPFDDD-NLIDYGLDSVRMMALAARWRKVHGDIDFVMLAKNPTIDAWWKLLS 281 LL E+ E D +L+D GLDSVR+M L +WR+ ++ FV LA+ PTI+ W KLL+ Sbjct: 241 ELLQETPEDITDQEDLLDRGLDSVRIMTLVEQWRREGAEVTFVELAERPTIEEWQKLLT 299
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 361 bits (927), Expect = e-129 Identities = 110/258 (42%), Positives = 149/258 (57%), Gaps = 20/258 (7%) Query: 5 GKNVWVTGAGKGIGYATALAFVEAGAKVTGFD---------------QAFSQEQYPFATE 49 GK ++TGA +GIG A A GA + D +A E +P Sbjct: 8 GKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFP---- 63 Query: 50 VMDVADAAQVAQVCQRLLAETERLDVLVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFN 109 DV D+A + ++ R+ E +D+LVN AG+LR G LS E+W+ TF+VN G FN Sbjct: 64 -ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFN 122 Query: 110 LFQQTMNQFRRQRGGAIVTVASDAAHTPRIGMSAYGASKAALKSLALSVGLELAGSGVRC 169 + +R G+IVTV S+ A PR M+AY +SKAA +GLELA +RC Sbjct: 123 ASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRC 182 Query: 170 NVVSPGSTDTDMQRTLWVSDDAEEQRIRGFGEQFKLGIPLGKIACPQEIANTILFLASDL 229 N+VSPGST+TDMQ +LW ++ EQ I+G E FK GIPL K+A P +IA+ +LFL S Sbjct: 183 NIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQ 242 Query: 230 ASHITLQDIVVDGGSTLG 247 A HIT+ ++ VDGG+TLG Sbjct: 243 AGHITMHNLCVDGGATLG 260
>BCTLIPOCALIN#Bacterial lipocalin signature. Length = 171 Score = 28.8 bits (64), Expect = 0.013 Identities = 18/98 (18%), Positives = 39/98 (39%), Gaps = 13/98 (13%) Query: 30 QGITIIKTFDAPGGMKGYLGKYQDMGVTIYLTPDGKHAISG--YMYNEKGENLSNTLIEK 87 + + + F+ YLGK+ ++ + G ++ + N+ G ++ N Sbjct: 21 ESVKPVSDFEL----NNYLGKWYEVARLDHSFERGLSQVTAEYRVRNDGGISVLN----- 71 Query: 88 EIYAPAGREMWQRMEQSHWLLDGKKDAPVIVYVFADPF 125 Y+ + W+ E + ++G D + V F PF Sbjct: 72 RGYSEE-KGEWKEAEGKAYFVNGSTDGYLKVSFFG-PF 107
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 132 bits (334), Expect = 5e-40 Identities = 80/260 (30%), Positives = 127/260 (48%), Gaps = 10/260 (3%) Query: 1 MNAFSLHNKTALITGAASGLGLAMAKCMIVSGAKVIIADLNGELAQATAGTLGSQASW-- 58 MNA + K A ITGAA G+G A+A+ + GA + D N E + +L ++A Sbjct: 1 MNAKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAE 60 Query: 59 -IQMDVGDTAAAQEKVDVLISEHGAIDILVNNAGNHCKKPIEEMSVSDFESVLDVHVVGA 117 DV D+AA E + E G IDILVN AG I +S ++E+ V+ G Sbjct: 61 AFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGV 120 Query: 118 FALTKALVPHMKQRGKGCVLFTASMTSFLGQPLVTGYSAAKSAYLGMIRGMTTELAVHGI 177 F ++++ +M R G ++ S + + + + Y+++K+A + + + ELA + I Sbjct: 121 FNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNI 180 Query: 178 RVNGIAPGWIDTPMLRKAIEGDDERRNKILGR-------TPMKKFGKPEDIGWAAVYLAS 230 R N ++PG +T M ++ I G P+KK KP DI A ++L S Sbjct: 181 RCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVS 240 Query: 231 DAAAFVSGQVLVVDGGALIG 250 A ++ L VDGGA +G Sbjct: 241 GQAGHITMHNLCVDGGATLG 260
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 31.4 bits (71), Expect = 0.003 Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 1/41 (2%) Query: 14 VDDAPRMQDYTLEAEEGRDM-MLLDALIQLKEKDPSLSFRR 53 +++ + T+E + + MLLDAL+++ + DP L + Sbjct: 339 IENPLPLLQTTVEPSKPQQREMLLDALLEISDSDPLLRYYV 379
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 60.1 bits (145), Expect = 1e-11 Identities = 37/217 (17%), Positives = 70/217 (32%), Gaps = 18/217 (8%) Query: 99 EQERLKQLEKERLAAQEQKKQAEEAAKQAELKQKQAEEAAAKAAADAKAKAEADAKAAEE 158 E E+ Q QA+ + E A A ++ E Sbjct: 984 EVEKRNQTVDTTNITTPNNIQADVPSVP----SNNEEIARVDEAPVPPPAPATPSETTET 1039 Query: 159 AAK--KAAADAKKKAEAEAAKAAVEAQKKAEAAAAALKKKAEAAEAA--AAEARKKAATE 214 A+ K + +K E +A + + ++ A+ A + +K + E A +E ++ TE Sbjct: 1040 VAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTE 1099 Query: 215 AAEKAKAEAEKKAAAEKAAADKKAAEKAAAEKAAADKKAAAEKAAADKKAAEKAAAEKAA 274 E A E E+KA E + K + E++ + AE A Sbjct: 1100 TKETATVEKEEKAKVE-------TEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPT 1152 Query: 275 ADKKAAAEKAAADKKAAAAKAAAEKAAAAKAAAEADD 311 E + A + A++ ++ + Sbjct: 1153 V---NIKEPQSQTNTTADTEQPAKETSSNVEQPVTES 1186 Score = 59.3 bits (143), Expect = 2e-11 Identities = 33/252 (13%), Positives = 90/252 (35%), Gaps = 13/252 (5%) Query: 68 QSQESSAKRSDEQRKMKEQQAAEELREKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQA 127 Q+ S ++E+ ++ +E ++ + +K E+ A + Sbjct: 1004 QADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKN--EQDATET 1061 Query: 128 ELKQKQ-AEEAAAKAAAD------AKAKAEADAKAAEEAAKKAAADAKKKAEAEAAKAAV 180 + ++ A+EA + A+ A++ +E E + A + ++KA+ E K Sbjct: 1062 TAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQE 1121 Query: 181 EAQKKAEAAAAALKKKAEAAEAAAAEARKKAATEAAEKAKAEAEKKAAAEKAAADKKAAE 240 + ++ + ++++E + A AR+ T ++ +++ A E+ A + + Sbjct: 1122 VPKVTSQVSPK--QEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNV 1179 Query: 241 KAAAEKAAADKK--AAAEKAAADKKAAEKAAAEKAAADKKAAAEKAAADKKAAAAKAAAE 298 + ++ + E A + +++K + + + A Sbjct: 1180 EQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATT 1239 Query: 299 KAAAAKAAAEAD 310 + A D Sbjct: 1240 SSNDRSTVALCD 1251 Score = 55.5 bits (133), Expect = 3e-10 Identities = 35/261 (13%), Positives = 77/261 (29%), Gaps = 1/261 (0%) Query: 66 RMQSQESSAKRSDEQRKMKEQQAAEELREKQAAEQERLKQLEKERLAAQEQKKQAEEAAK 125 R ++E+ + + + Q+ E +E Q E + +EKE A E +K E Sbjct: 1066 REVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKV 1125 Query: 126 QAELKQKQAEEAAAKAAADAKAKAEADAKAAEEAAKKAAADAKKKAEAEAAKAAVEAQKK 185 +++ KQ + + A+ + + +E + A + A+ + VE Sbjct: 1126 TSQVSPKQEQSETVQPQAEPARENDP-TVNIKEPQSQTNTTADTEQPAKETSSNVEQPVT 1184 Query: 186 AEAAAAALKKKAEAAEAAAAEARKKAATEAAEKAKAEAEKKAAAEKAAADKKAAEKAAAE 245 E E + + +++ + A + Sbjct: 1185 ESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDR 1244 Query: 246 KAAADKKAAAEKAAADKKAAEKAAAEKAAADKKAAAEKAAADKKAAAAKAAAEKAAAAKA 305 A + A A A A KA ++ + + + + + Sbjct: 1245 STVALCDLTSTNTNAVLSDARAKAQFVALNVGKAVSQHISQLEMNNEGQYNVWVSNTSMN 1304 Query: 306 AAEADDIFGELSSGKNAPKTG 326 + + SS + G Sbjct: 1305 KNYSSSQYRRFSSKSTQTQLG 1325 Score = 54.3 bits (130), Expect = 8e-10 Identities = 37/280 (13%), Positives = 92/280 (32%), Gaps = 29/280 (10%) Query: 51 DAVMVDSGAVVEQYKRMQSQESSAKRSDEQRKMKEQQAAE-ELREKQAAEQER------L 103 D V A + ++ ++K+ + + EQ A E + ++ A++ + Sbjct: 1021 DEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANT 1080 Query: 104 KQLEKERLAAQEQKKQAEEAAKQAELKQKQAEEAAAKAAADAKAKAEADAKAAEEAAKKA 163 + E + ++ ++ Q K+ +K+ KAK E + +E K Sbjct: 1081 QTNEVAQSGSETKETQ-TTETKETATVEKE-----------EKAKVETEKT--QEVPKVT 1126 Query: 164 AADAKKKAEAEAAKAAVEAQKKAEAAAAALKKKAEAAEAAAAEARKKAATEAAEKAKAEA 223 + + K+ ++E + E ++ + E + + A++ + Sbjct: 1127 SQVSPKQEQSETVQPQAEPARENDPTVN-------IKEPQSQTNTTADTEQPAKETSSNV 1179 Query: 224 EKKAAAEKAAADKKAAEKAAAEKAAADKKAAAEKAAADKKAAEKAAAEKAAADKKAAAEK 283 E+ + + A + +++K + ++ A Sbjct: 1180 EQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATT 1239 Query: 284 AAADKKAAA-AKAAAEKAAAAKAAAEADDIFGELSSGKNA 322 ++ D+ A + A + A A F L+ GK Sbjct: 1240 SSNDRSTVALCDLTSTNTNAVLSDARAKAQFVALNVGKAV 1279
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 47.2 bits (112), Expect = 3e-08 Identities = 36/146 (24%), Positives = 63/146 (43%), Gaps = 5/146 (3%) Query: 197 AREREQGTLDQLLVSPLTTWQIFIGKAVPALIVATFQATIVLAIGIWAYQIPFAGSLALF 256 R Q T + +L + L I +G+ A A IG+ A + + L+L Sbjct: 92 GRMEGQRTWEAMLYTQLRLGDIVLGEMAWAATKAALAGA---GIGVVAAALGYTQWLSLL 148 Query: 257 YFTMVI--YGLSLVGFGLLISSLCSTQQQAFIGVFVFMMPAILLSGYVSPVENMPVWLQN 314 Y VI GL+ G+++++L + + + P + LSG V PV+ +P+ Q Sbjct: 149 YALPVIALTGLAFASLGMVVTALAPSYDYFIFYQTLVITPILFLSGAVFPVDQLPIVFQT 208 Query: 315 LTWINPIRHFTDITKQIYLKDASLDI 340 P+ H D+ + I L +D+ Sbjct: 209 AARFLPLSHSIDLIRPIMLGHPVVDV 234
>PF05272#Virulence-associated E family protein Length = 892 Score = 31.6 bits (71), Expect = 0.012 Identities = 20/90 (22%), Positives = 28/90 (31%), Gaps = 21/90 (23%) Query: 293 TPRFEDAFIDLLGGAGTSESPLGAILHTVEGTPGETVIEAKELTKKFGDFAATDHVNFAV 352 PR E + +LG P + + + K HV + Sbjct: 547 VPRLEKWLVHVLGKTPDDYKP-------------RRLRYLQLVGKYI----LMGHVARVM 589 Query: 353 KRGEIFG----LLGPNGAGKSTTFKMMCGL 378 + G F L G G GKST + GL Sbjct: 590 EPGCKFDYSVVLEGTGGIGKSTLINTLVGL 619 Score = 29.7 bits (66), Expect = 0.046 Identities = 11/23 (47%), Positives = 13/23 (56%) Query: 34 YVTGLVGPDGAGKTTLMRMLAGL 56 Y L G G GK+TL+ L GL Sbjct: 597 YSVVLEGTGGIGKSTLINTLVGL 619
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 62.2 bits (151), Expect = 6e-13 Identities = 42/259 (16%), Positives = 92/259 (35%), Gaps = 25/259 (9%) Query: 82 ALMQAKAGVSVAQAQYDLMLAGYRDEEIAQAAAAVKQAQAAYDYAQNFYNRQQGLWKSRT 141 Q + + +A+ +LA E + + + + L + Sbjct: 201 QKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENK 260 Query: 142 ISA--NDLENARSSRDQAQATLKSAQDKLRQYRSGNREQ---DIAQAKASLEQAQAQLAQ 196 N+L +S +Q ++ + SA+++ + + + + Q ++ +LA+ Sbjct: 261 YVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAK 320 Query: 197 AELNLQDSTLIAPSDGTLLTRAV-EPGTVLNEGGTVFTVSLT-RPVWVRAYVDERNLDQA 254 E Q S + AP + V G V+ T+ + + V A V +++ Sbjct: 321 NEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFI 380 Query: 255 QPGRKVLLYTDGRPDKPYH---GQIGFVSPTAEFTPKTVETPDLRTDLVYRLRIVVT--- 308 G+ ++ + P Y G++ ++ A D R LV+ + I + Sbjct: 381 NVGQNAIIKVEAFPYTRYGYLVGKVKNINLDA--------IEDQRLGLVFNVIISIEENC 432 Query: 309 ----DADDALRQGMPVTVQ 323 + + L GM VT + Sbjct: 433 LSTGNKNIPLSSGMAVTAE 451
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 72.0 bits (176), Expect = 1e-17 Identities = 32/220 (14%), Positives = 74/220 (33%), Gaps = 29/220 (13%) Query: 9 KGEQAKKQLIAAALAQFGEYGMNATT-REIAAQAGQNIAAITYYFGSKEDLYLACAQWIA 67 + ++ ++ ++ AL F + G+++T+ EIA AG AI ++F K DL+ + Sbjct: 8 EAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSE 67 Query: 68 DFIGEQFRPHAEEAERLFAQPQPDRAAIRELILRACRNMIKLLTQDDTVNLSK---FISR 124 IGE E + P + +RE+++ + + + + + Sbjct: 68 SNIGELEL---EYQAKFPGDP---LSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVG 121 Query: 125 EQLSPTAAYHLVHEQVISPLHSHLTRLIAAW---TGCDASDTRMILHTHALIGEILAFRL 181 E A + + + L I A +I+ I ++ Sbjct: 122 EMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIM--RGYISGLM---- 175 Query: 182 GKETILLRTGWTAFDEEKTELINQTVTCHIDLILQGLSQR 221 W + + + ++ ++L+ Sbjct: 176 --------ENWLFAPQSFD--LKKEARDYVAILLEMYLLC 205
>SECA#SecA protein signature. Length = 901 Score = 29.8 bits (67), Expect = 0.026 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 4/67 (5%) Query: 246 QQVLVFTRTKHGANHLAEQLNKDGIRSAAIHG-NKSQGARTRALADFKSGDIRVLVATDI 304 Q VLV T + + ++ +L K GI+ ++ + A A A + + V +AT++ Sbjct: 450 QPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPAA---VTIATNM 506 Query: 305 AARGLDI 311 A RG DI Sbjct: 507 AGRGTDI 513
>OUTRMMBRANEA#Outer membrane protein A signature. Length = 346 Score = 607 bits (1567), Expect = 0.0 Identities = 337/350 (96%), Positives = 339/350 (96%), Gaps = 4/350 (1%) Query: 1 MKKTAIAIAVALAGFATVAQAAPKDNTWYTGAKLGWSQYHDTGFIPNNGPTHENQLGAGA 60 MKKTAIAIAVALAGFATVAQAAPKDNTWYTGAKLGWSQYHDTGFI NNGPTHENQLGAGA Sbjct: 1 MKKTAIAIAVALAGFATVAQAAPKDNTWYTGAKLGWSQYHDTGFINNNGPTHENQLGAGA 60 Query: 61 FGGYQVNPYVGFEMGYDWLGRMPYKGDNINGAYKAQGVQLTAKLGYPITDDLDIYTRLGG 120 FGGYQVNPYVGFEMGYDWLGRMPYKG NGAYKAQGVQLTAKLGYPITDDLDIYTRLGG Sbjct: 61 FGGYQVNPYVGFEMGYDWLGRMPYKGSVENGAYKAQGVQLTAKLGYPITDDLDIYTRLGG 120 Query: 121 MVWRADTKANVPGGASFKDHDTGVSPVFAGGVEYAITPEIATRLEYQWTNNIGDAHTIGT 180 MVWRADTK+NV G K+HDTGVSPVFAGGVEYAITPEIATRLEYQWTNNIGDAHTIGT Sbjct: 121 MVWRADTKSNVYG----KNHDTGVSPVFAGGVEYAITPEIATRLEYQWTNNIGDAHTIGT 176 Query: 181 RPDNGMLSLGVSYRFGQGEAAPVVAPAPAPAPEVQTKHFTLKSDVLFTFNKATLKPEGQA 240 RPDNGMLSLGVSYRFGQGEAAPVVAPAPAPAPEVQTKHFTLKSDVLF FNKATLKPEGQA Sbjct: 177 RPDNGMLSLGVSYRFGQGEAAPVVAPAPAPAPEVQTKHFTLKSDVLFNFNKATLKPEGQA 236 Query: 241 ALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQALSERRAQSVVDYLISKGIPADKIS 300 ALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQ LSERRAQSVVDYLISKGIPADKIS Sbjct: 237 ALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSVVDYLISKGIPADKIS 296 Query: 301 ARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEVKGIKDVVTQPQA 350 ARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEVKGIKDVVTQPQA Sbjct: 297 ARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEVKGIKDVVTQPQA 346
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 75.8 bits (186), Expect = 2e-18 Identities = 44/176 (25%), Positives = 71/176 (40%), Gaps = 23/176 (13%) Query: 12 TFDPQQSALIVVDMQNAYATPGGYLDLAGFDVSTTRPVIANIQTAVTAARAAGMLIIWFQ 71 DP ++ L++ DMQN + +D S + ANI+ G+ +++ Sbjct: 25 VPDPNRAVLLIHDMQNYF------VDAFTAGASPVTELSANIRKLKNQCVQLGIPVVY-- 76 Query: 72 NGWDEQYVEAGGPGSPNFHKSNALKTMRKQPQLQGKLLAKGSWDYQLVDELVPQPGDIVL 131 PGS N L G L G ++ +++ EL P+ D+VL Sbjct: 77 ---------TAQPGSQNPDDRALLTDF------WGPGLNSGPYEEKIITELAPEDDDLVL 121 Query: 132 PKPRYSGFFNTPLDSILRSRGIRHLVFTGIATNVCVESTLRDGFFLEYFGVVLEDA 187 K RYS F T L ++R G L+ TGI ++ T + F + + DA Sbjct: 122 TKWRYSAFKRTNLLEMMRKEGRDQLIITGIYAHIGCLVTACEAFMEDIKAFFVGDA 177
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 65.8 bits (160), Expect = 2e-15 Identities = 30/165 (18%), Positives = 62/165 (37%), Gaps = 8/165 (4%) Query: 10 GKRSRAVSAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAV 69 K + ++ IL AL FSQ G T L +IA+ AGV++ + ++F K L+ + Sbjct: 3 RKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI 62 Query: 70 LRQILDIWLAPLKAFREDF--APLAAIKEYIRLKLEVSRDYPQASRLFCM-----EMLAG 122 ++ F PL+ ++E + LE + + L + E + Sbjct: 63 WELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGE 122 Query: 123 APLLMDELTGDLKALIDEKSALIAGWVKSGKL-APIDPQHLIFMI 166 ++ D + +++ L A + + ++ Sbjct: 123 MAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIM 167
>BINARYTOXINA#Clostridial binary toxin A signature. Length = 454 Score = 29.6 bits (66), Expect = 0.025 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 6/77 (7%) Query: 335 DQVIKTVVNIIGKSIRPDDLLA--RVGGEEFGVLLTEIDTECAKALAERIRENVERLTGD 392 D + + N + + P +L+ R G +EFG+ LT + + K E I E+ G Sbjct: 313 DSKVNNIENALKLTPIPSNLIVYRRSGPQEFGLTLTSPEYDFNK--IENIDAFKEKWEGK 370 Query: 393 NPEYAIPQKVTISIGAV 409 Y P ++ SIG+V Sbjct: 371 VITY--PNFISTSIGSV 385
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 41.5 bits (97), Expect = 5e-06 Identities = 17/49 (34%), Positives = 29/49 (59%) Query: 353 TLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNLR 401 L+N S V+L +E N+ Q+ Y +NAQ ++T + I + L+N+R Sbjct: 498 QLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINIR 546 Score = 36.9 bits (85), Expect = 1e-04 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 4/56 (7%) Query: 6 AVSGLNAAATNLDVIGNNIANSATYGFKSGTASFAD----MFAGSKVGLGVKVAGI 57 A+SGLNAA L+ NNI++ G+ T A + AG VG GV V+G+ Sbjct: 7 AMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVSGV 62
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 43.8 bits (103), Expect = 4e-07 Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 14/81 (17%) Query: 3 SSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQTTL 62 S + A +GL+A Q ++ +NN+++ + G+ RQ + + +TL Sbjct: 2 SLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTI--------------MAQANSTL 47 Query: 63 PSGLQIGTGVRPVATERLHSQ 83 +G +G GV +R + Sbjct: 48 GAGGWVGNGVYVSGVQREYDA 68 Score = 41.1 bits (96), Expect = 3e-06 Identities = 11/41 (26%), Positives = 21/41 (51%) Query: 220 ETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQL 260 S VN+ EE N+ + Q+ Y N++ + T + + L + Sbjct: 505 SISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 347 bits (892), Expect = e-125 Identities = 231/232 (99%), Positives = 231/232 (99%) Query: 1 MQKNAAHTYAISSLLALSLTGCAWIPSTPLVQGATSAQPVPGPTPVANGSIFQSAQPINY 60 MQKNAAHTYAISSLL LSLTGCAWIPSTPLVQGATSAQPVPGPTPVANGSIFQSAQPINY Sbjct: 1 MQKNAAHTYAISSLLVLSLTGCAWIPSTPLVQGATSAQPVPGPTPVANGSIFQSAQPINY 60 Query: 61 GYQPLFEDRRPRNIGDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVPRYLQGLFGNA 120 GYQPLFEDRRPRNIGDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVPRYLQGLFGNA Sbjct: 61 GYQPLFEDRRPRNIGDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVPRYLQGLFGNA 120 Query: 121 RADVEASGGNTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGEKQIAINQGTEFIRF 180 RADVEASGGNTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGEKQIAINQGTEFIRF Sbjct: 121 RADVEASGGNTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGEKQIAINQGTEFIRF 180 Query: 181 SGVVNPRTISGSNTVPSTQVADARIEYVGNGYINEAQNMGWLQRFFLNLSPM 232 SGVVNPRTISGSNTVPSTQVADARIEYVGNGYINEAQNMGWLQRFFLNLSPM Sbjct: 181 SGVVNPRTISGSNTVPSTQVADARIEYVGNGYINEAQNMGWLQRFFLNLSPM 232
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 427 bits (1100), Expect = e-152 Identities = 157/363 (43%), Positives = 213/363 (58%), Gaps = 9/363 (2%) Query: 4 FLSALILLLVTTAAQAERIRDLTSVQGVRQNSLIGYGLVVGLDGTGDQTTQTPFTTQTLN 63 F + L A RI+D+ S+Q R N LIGYGLVVGL GTGD +PFT Q++ Sbjct: 13 FSALPFLSTPPAQADTSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDSLRSSPFTEQSMR 72 Query: 64 NMLSQLGITVPTGTNMQLKNVAAVMVTASLPPFGRQGQTIDVVVSSMGNAKSLRGGTLLM 123 ML LGIT G + KN+AAVMVTA+LPPF G +DV VSS+G+A SLRGG L+M Sbjct: 73 AMLQNLGITTQGGQS-NAKNIAAVMVTANLPPFASPGSRVDVTVSSLGDATSLRGGNLIM 131 Query: 124 TPLKGVDSQVYALAQGNILVGGAGASAGGSSVQVNQLNGGRITNGAVIERELPSQFGVGN 183 T L G D Q+YA+AQG ++V G A +++ R+ NGA+IERELPS+F Sbjct: 132 TSLSGADGQIYAVAQGALIVNGFSAQGDAATLTQGVTTSARVPNGAIIERELPSKFKDSV 191 Query: 184 TLNLQLNDEDFSMAQQIADTINRVR----GYGSATALDARTIQVRVPSGNSSQVRFLADI 239 L LQL + DFS A ++AD +N G A D++ I V+ P + R +A+I Sbjct: 192 NLVLQLRNPDFSTAVRVADVVNAFARARYGDPIAEPRDSQEIAVQKPRV-ADLTRLMAEI 250 Query: 240 QNMQVNVTPQDAKVVINSRTGSVVMNREVTLDSCAVAQGNLSVTVNRQANVSQPDTPFGG 299 +N+ V T AKVVIN RTG++V+ +V + AV+ G L+V V V QP PF Sbjct: 251 ENLTVE-TDTPAKVVINERTGTIVIGADVRISRVAVSYGTLTVQVTESPQVIQP-APFSR 308 Query: 300 GQTVVTPQTQIDLRQSGGSLQSVRSSASLNNVVRALNALGATPMDLMSILQSMQSAGCLR 359 GQT V PQT I Q G + ++ L +V LN++G +++ILQ ++SAG L+ Sbjct: 309 GQTAVQPQTDIMAMQEGSKV-AIVEGPDLRTLVAGLNSIGLKADGIIAILQGIKSAGALQ 367 Query: 360 AKL 362 A+L Sbjct: 368 AEL 370
>FLGFLGJ#Flagellar protein FlgJ signature. Length = 313 Score = 511 bits (1318), Expect = 0.0 Identities = 311/313 (99%), Positives = 312/313 (99%) Query: 1 MISDSKLLASAAWDAQSLNELKAKAGEDPAANIRPVARQVEGMFVQMMLKSMRDALPKDG 60 MISDSKLLASAAWDAQSLNELKAKAGEDPAANIRPVARQVEGMFVQMMLKSMRDALPKDG Sbjct: 1 MISDSKLLASAAWDAQSLNELKAKAGEDPAANIRPVARQVEGMFVQMMLKSMRDALPKDG 60 Query: 61 LFSSEHTRLYTSMYDQQIAQQMTAGKGLGLAEMMVKQMTPEQPLPEESTPAAPIKFPLET 120 LFSSEHTRLYTSMYDQQIAQQMTAGKGLGLAEMMVKQMTPEQPLPEESTPAAP+KFPLET Sbjct: 61 LFSSEHTRLYTSMYDQQIAQQMTAGKGLGLAEMMVKQMTPEQPLPEESTPAAPMKFPLET 120 Query: 121 VVRYQNQTLSQLVQKAVPRNYDDSLPGDSKAFLAQLSLPAQLASQQSGVPHHLILAQAAL 180 VVRYQNQ LSQLVQKAVPRNYDDSLPGDSKAFLAQLSLPAQLASQQSGVPHHLILAQAAL Sbjct: 121 VVRYQNQALSQLVQKAVPRNYDDSLPGDSKAFLAQLSLPAQLASQQSGVPHHLILAQAAL 180 Query: 181 ESGWGQRQIRRENGEPSYNLFGVKASGNWKGPVTEITTTEYENGEAKKVKAKFRVYSSYL 240 ESGWGQRQIRRENGEPSYNLFGVKASGNWKGPVTEITTTEYENGEAKKVKAKFRVYSSYL Sbjct: 181 ESGWGQRQIRRENGEPSYNLFGVKASGNWKGPVTEITTTEYENGEAKKVKAKFRVYSSYL 240 Query: 241 EALSDYVGLLTRNPRYAAVTTAASAEQGAQALQDAGYATDPHYARKLTNMIQQMKSISDK 300 EALSDYVGLLTRNPRYAAVTTAASAEQGAQALQDAGYATDPHYARKLTNMIQQMKSISDK Sbjct: 241 EALSDYVGLLTRNPRYAAVTTAASAEQGAQALQDAGYATDPHYARKLTNMIQQMKSISDK 300 Query: 301 VSKTYSMNIDNLF 313 VSKTYSMNIDNLF Sbjct: 301 VSKTYSMNIDNLF 313
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 681 bits (1759), Expect = 0.0 Identities = 543/546 (99%), Positives = 543/546 (99%) Query: 2 SSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVS 61 SSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVS Sbjct: 1 SSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVS 60 Query: 62 GVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLSTSTSSLATQMQDFFTSLQTLV 121 GVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLSTSTSSLATQMQDFFTSLQTLV Sbjct: 61 GVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLSTSTSSLATQMQDFFTSLQTLV 120 Query: 122 SNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASLND 181 SNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASLND Sbjct: 121 SNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASLND 180 Query: 182 QISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQGSTA 241 QISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQGSTA Sbjct: 181 QISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQGSTA 240 Query: 242 RQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTLGQL 301 RQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTLGQL Sbjct: 241 RQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTLGQL 300 Query: 302 ALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDTSAVLATD 361 ALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTD SAVLATD Sbjct: 301 ALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVLATD 360 Query: 362 YKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSDAIV 421 YKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSDAIV Sbjct: 361 YKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSDAIV 420 Query: 422 NMDVLITDEAKIAMASAEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSDIGN 481 NMDVLITDEAKIAMAS EDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSDIGN Sbjct: 421 NMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSDIGN 480 Query: 482 KTATLKTSSTTQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFD 541 KTATLKTSS TQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFD Sbjct: 481 KTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFD 540 Query: 542 ALINIR 547 ALINIR Sbjct: 541 ALINIR 546
>FLAGELLIN#Flagellin signature. Length = 507 Score = 47.0 bits (111), Expect = 5e-08 Identities = 42/226 (18%), Positives = 80/226 (35%), Gaps = 9/226 (3%) Query: 7 MMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNSQYTLAR 66 ++ Q N+ +S + + E++S+G R+ + DD + A + +Q + Sbjct: 11 LLTQNNLNKSQSSLSSAI---ERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQASRNA 67 Query: 67 TFATQKVSLEESVLSQVTTAIQNAQEKIVYASNGTLSDDDRASLATDIQGLRDQLLNLAN 126 E L+++ +Q +E V A+NGT SD D S+ +IQ +++ ++N Sbjct: 68 NDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEIDRVSN 127 Query: 127 TTDGNGRYIFAGYKTESAPFSEADGKYEGGAESIKQQVDASRSMVIGHTGDKIFDSITSN 186 T NG + + DG E+I + +G G + + Sbjct: 128 QTQFNGVKVLSQDNQMKIQVGANDG------ETITIDLQKIDVKSLGLDGFNVNGPKEAT 181 Query: 187 AVAEPDGSASETNLFAMLDSAIAALKTPVADSEADKETAAAALDKT 232 + T A + + TA DK Sbjct: 182 VGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKV 227
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 65.5 bits (159), Expect = 1e-12 Identities = 60/298 (20%), Positives = 92/298 (30%), Gaps = 54/298 (18%) Query: 513 PSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPVVAPAPKSAPATPAAPAQPGLLS 572 P E+ + DVP P+ E A AP P APA P Sbjct: 983 PEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIA-----RVDEAPVPPPAPATP---- 1033 Query: 573 RFFGALKALFSGGEETKPSEQPTPKAEAKPERQQDRRKPRQNNRRDRNERRDPRSERTEG 632 SE AE + + K Q Sbjct: 1034 ------------------SETTETVAENSKQESKTVEKNEQ------------------- 1056 Query: 633 SDNREENRRNRRQAQQQTAETRESRQQAEV------TEKARTTDEQQTPRRERSRRRNDD 686 D E +NR A++ + + + Q EV T++ +TT+ ++T E+ + + Sbjct: 1057 -DATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVE 1115 Query: 687 KRQAQQEVKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVE 746 + QEV + + QE + + + R +N K Q+ P E Sbjct: 1116 TEK-TQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKE 1174 Query: 747 ETVAAEPIVQEAAAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRH 804 + E V E+ T V P A Q N+ + RRS RS H Sbjct: 1175 TSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPH 1232
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 27.5 bits (61), Expect = 0.045 Identities = 17/77 (22%), Positives = 27/77 (35%), Gaps = 11/77 (14%) Query: 2 KNIAAQMVNFDREQM-----------RRIANNMPEQYDEKPQVQQVAQIINGVFSQLLAT 50 N+A ++ DR +++A+ E Y V V +IIN + Sbjct: 165 TNVARRIALMDRTSPEVVREVERVLEKKLASLSSEDYTSAGGVDNVVEIINMADRKTEKF 224 Query: 51 FPASLANRDQNELNEIR 67 SL D EI+ Sbjct: 225 IIESLEEEDPELAEEIK 241
>ECOLIPORIN#E.coli/Salmonella-type porin signature. Length = 383 Score = 507 bits (1308), Expect = 0.0 Identities = 241/388 (62%), Positives = 280/388 (72%), Gaps = 33/388 (8%) Query: 1 MKKLTVAISAVAASVLMAMSAQAAEIYNKDSNKLDLYGKVNAKHYFSSNDADDGDTTYAR 60 MK+ +A+ V ++L A +A AAEIYNKD NKLDLYGKV+ HYFS + + DGD TY R Sbjct: 1 MKRKVLAL--VIPALLAAGAAHAAEIYNKDGNKLDLYGKVDGLHYFSDDSSKDGDQTYMR 58 Query: 61 LGFKGETQINDQLTGFGQWEYEFKGNRAESQGSSKDKTRLAFAGLKFGDYGSIDYGRNYG 120 +GFKGETQINDQLTG+GQWEY + N E +G++ TRLAFAGLKFGDYGS DYGRNYG Sbjct: 59 VGFKGETQINDQLTGYGQWEYNVQANTTEGEGANS-WTRLAFAGLKFGDYGSFDYGRNYG 117 Query: 121 VAYDIGAWTDVLPEFGGDTWTQTDVFMTGRTTGVATYRNNDFFGLVDGLNFAAQYQGKND 180 V YD+ WTD+LPEFGGD++T D +MTGR GVATYRN DFFGLVDGLNFA QYQGKN+ Sbjct: 118 VLYDVEGWTDMLPEFGGDSYTYADNYMTGRANGVATYRNTDFFGLVDGLNFALQYQGKNE 177 Query: 181 R----------------TDVTEVNGDGFGFSTTYEY-EGFGVGATYAKSDRTDGQVAYGK 223 D+ NGDGFG STTY+ GF GA Y SDRT+ QV G Sbjct: 178 SQSADDVNIGTNNRNNGDDIRYDNGDGFGISTTYDIGMGFSAGAAYTTSDRTNEQVNAGG 237 Query: 224 SKFNASGKNAEVWAAGLKYDANNIYLATTYSETQNMTVFG------NNHIANKAQNFEAV 277 + A G A+ W AGLKYDANNIYLAT YSET+NMT +G + +ANK QNFE Sbjct: 238 T--IAGGDKADAWTAGLKYDANNIYLATMYSETRNMTPYGKTDKGYDGGVANKTQNFEVT 295 Query: 278 AQYQFDFGLRPSVAYLQSKGKDLGVH----GDRDLVKYVDVGATYYFNKNMSTFVDYKIN 333 AQYQFDFGLRP+V++L SKGKDL + D+DLVKY DVGATYYFNKN ST+VDYKIN Sbjct: 296 AQYQFDFGLRPAVSFLMSKGKDLTYNNVNGDDKDLVKYADVGATYYFNKNFSTYVDYKIN 355 Query: 334 LID-DSKFTKTAGIDTDDIVAVGLVYQF 360 L+D D F K AGI TDDIVA+G+VYQF Sbjct: 356 LLDDDDPFYKDAGISTDDIVALGMVYQF 383
>2FE2SRDCTASE#Ferric iron reductase signature. Length = 262 Score = 31.2 bits (70), Expect = 0.010 Identities = 10/41 (24%), Positives = 21/41 (51%), Gaps = 1/41 (2%) Query: 302 TRDGLMFFSARGDEIPPPRSITFHIWTAYSPFTTWVQIVYD 342 R+ L+ F R DE P ++T W++ + ++ + + D Sbjct: 36 HREHLLEF-IRLDEPAPLNAMTLAQWSSPNVLSSLLAVYSD 75
>INTIMIN#Intimin signature. Length = 939 Score = 28.5 bits (63), Expect = 0.026 Identities = 21/130 (16%), Positives = 47/130 (36%), Gaps = 17/130 (13%) Query: 134 KEVITRTVKVTNVGRPSMAEDRSTVTATTGMTVTP--------ASASVVKGQSTTLTVAF 185 ++ IT TVKV +P ++ + T ++ + A ++ V+ Sbjct: 675 QDAITYTVKVMKGDKPVSNQEVTFTTTLGKLSNSTEKTDTNGYAKVTLTSTTPGKSLVSA 734 Query: 186 QPEGA-------TDKSFRAVSADKTKATVSVSGMTITV--NGVAAGKVNIPVVSGNGEFA 236 + + F ++ D + +G+ + + G+VN+ GNG++ Sbjct: 735 RVSDVAVDVKAPEVEFFTTLTIDDGNIEIVGTGVKGKLPTVWLQYGQVNLKASGGNGKYT 794 Query: 237 AVAEITVTAS 246 + AS Sbjct: 795 WRSANPAIAS 804
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 38.5 bits (89), Expect = 1e-04 Identities = 54/384 (14%), Positives = 130/384 (33%), Gaps = 24/384 (6%) Query: 236 SGLTAMARQFHNVTAEQIAYVAQLQRSGDEAGALQAANEAATKGFDDQTRRLKENMGTLE 295 S R+ +E+ + + +L+ + + + + L+ L Sbjct: 95 SNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALA 154 Query: 296 TWADRTARAFKSMWDAVLDI-GRPDTAQEMLIKAEAAFKKADDIWNLRKDDYFVNDEARA 354 +A + + + T + EA + + + + Sbjct: 155 ARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIK 214 Query: 355 RYWDDREKARLALEAARK-KAEQQSQQDKNAQQQSDTEASRLKYTEEAQKAYERLQTPLE 413 ++ K + ++ + EA + + + L+ + Sbjct: 215 TLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMN 274 Query: 414 KYTARQEELNKALKDGKILQADYNTLMAAAKKDYEATLKKPKQSGVKVSAGDRQEDSAHA 473 TA ++ + L+A+ L + A + + R D++ Sbjct: 275 FSTADSAKIKTLEAEKAALEAEKADLEHQ-SQVLNANRQSLR----------RDLDASRE 323 Query: 474 ALLTLQAELRTLEKHAGANEKISQQ-RRDL-------WKAENQFAVLEEAAQRRQLSAQE 525 A L+AE + LE+ +E Q RRDL + E + LEE + + S Q Sbjct: 324 AKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQS 383 Query: 526 KS--LLAHKDETLEYKRQLAALGDKVTYQEHLNALAQQADKFAQQQRAK-RAAIDAKSRG 582 L A ++ + ++ L K+ E LN +++ K ++++A+ +A ++A+++ Sbjct: 384 LRRDLDASREAKKQVEKALEEANSKLAALEKLNKELEESKKLTEKEKAELQAKLEAEAKA 443 Query: 583 LTDRQAAREATEQRLKEEYGDNPL 606 L ++ A + +L+ + Sbjct: 444 LKEKLAKQAEELAKLRAGKASDSQ 467
>PF06291#Lambda prophage Bor protein Length = 102 Score = 26.2 bits (57), Expect = 0.046 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 5/40 (12%) Query: 102 MTGILFSLGASMVLGGVAQML-----APKARTPTATSTDN 136 M +LFS +M++ G AQ P A TP T T + Sbjct: 6 MKKMLFSAALAMLITGCAQQTFTVGNKPTAVTPKETITHH 45
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 40.0 bits (93), Expect = 3e-05 Identities = 31/143 (21%), Positives = 60/143 (41%), Gaps = 11/143 (7%) Query: 121 SQSAAAAKKSETAAASSRNA--AKTSETNAGNSAKAAASSKTAAQNAATAAERSETNARA 178 S + A+ E A ++T+ET A NS + + + + Q+A + N Sbjct: 1012 SNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQ---NREV 1068 Query: 179 SEEASADSEEASRRN--AESAAENAGVATTKAREAA--ADATKAGQKKDEALSAATRAEK 234 ++EA ++ + ++ N A+S +E TT+ +E A KA + ++ + Sbjct: 1069 AKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQ 1128 Query: 235 AADRAEAAAEV--TAEPYANIVP 255 + + E + V AEP P Sbjct: 1129 VSPKQEQSETVQPQAEPARENDP 1151
>cdtoxina#Cytolethal distending toxin A signature. Length = 258 Score = 27.4 bits (60), Expect = 0.018 Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 5/61 (8%) Query: 74 VELLPVEITPDEQKEPVAAIAPSLSTSTQTRVSASSCKVEFRHGNMTLENPSPELLTVLI 133 VE P +PDE P+ P+L T+ + ++L N +LT+ Sbjct: 40 VEGGPTVPSPDEPGLPLPGPGPALPTNGAIPIPEPGTAPA-----VSLMNMDGSVLTMWS 94 Query: 134 R 134 R Sbjct: 95 R 95
>PF06580#Sensor histidine kinase Length = 349 Score = 34.8 bits (80), Expect = 8e-04 Identities = 10/78 (12%), Positives = 32/78 (41%), Gaps = 8/78 (10%) Query: 19 QAEALRQKDQQLSLVEETEAFLRSALTRAEEKIEEDEREIEHLRA--QIEKLRRMLFGTR 76 +A L + ++ +R +L + + E+ + + Q+ ++ F Sbjct: 183 RALILEDPTKAREMLTSLSELMRYSLRYSNARQVSLADELTVVDSYLQLASIQ---FE-- 237 Query: 77 SEKLRREVELAEALLKQR 94 ++L+ E ++ A++ + Sbjct: 238 -DRLQFENQINPAIMDVQ 254
>adhesinb#Adhesin B signature. Length = 310 Score = 330 bits (847), Expect = e-116 Identities = 90/296 (30%), Positives = 163/296 (55%), Gaps = 7/296 (2%) Query: 9 MLLGGLALTCSIAFQASATEKFKVITTFTIIADMAKNVAGDAAEVSSITKPGAEIHEYQP 68 +G A + + + + K V+ T +IIAD+ KN+AGD + SI G + HEY+P Sbjct: 13 AFVGLAACSSQKSSTETGSSKLNVVATNSIIADITKNIAGDKINLHSIVPVGQDPHEYEP 72 Query: 69 TPGDIKRAQGAQLILANGMNLEL----WFQRFYQHLNGVPE---VIVSSGVTPVGITEGP 121 P D+K+ A LI NG+NLE WF + ++ VS GV + + Sbjct: 73 LPEDVKKTSQADLIFYNGINLETGGNAWFTKLVENAKKKENKDYYAVSEGVDVIYLEGQS 132 Query: 122 YEGKPNPHAWMSPDNALIYVDNIRDALIKYDPANAQTYQRNADTYKAKITQTLAPLRKQI 181 +GK +PHAW++ +N +IY NI L + DPAN +TY++N Y K++ +++ Sbjct: 133 EKGKEDPHAWLNLENGIIYAQNIAKRLSEKDPANKETYEKNLKAYVEKLSALDKEAKEKF 192 Query: 182 TELPENQRWMVTSEGAFSYLARDLGLKELYLWPINADQQGTPQQVRKVVDIVKKNHIPAV 241 +P ++ +VTSEG F Y ++ + Y+W IN +++GTP Q++ +V+ ++K +P++ Sbjct: 193 NNIPGEKKMIVTSEGCFKYFSKAYNVPSAYIWEINTEEEGTPDQIKTLVEKLRKTKVPSL 252 Query: 242 FSESTISDKPARQVARETGAHYGGVLYVDSLSTENGPVPTYIDLLKVTTSTLVQGI 297 F ES++ D+P + V+++T ++ DS++ + +Y ++K + +G+ Sbjct: 253 FVESSVDDRPMKTVSKDTNIPIYAKIFTDSVAEKGEEGDSYYSMMKYNLEKIAEGL 308
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 142 bits (360), Expect = 4e-39 Identities = 62/206 (30%), Positives = 100/206 (48%), Gaps = 1/206 (0%) Query: 258 GKAFYYQPVLCTVQAKSTLTVEEEQERLRQAIDFTLLDLMTLTAKAETSGLDDIAAIFSG 317 KAF + ++ S V E E+L A++ + +L + + E S D A IF+ Sbjct: 17 AKAFIHLEPNVDIEKTSITDVSTEIEKLTAALEKSKEELRAIKDQTEASMGADKAEIFAA 76 Query: 318 HHTLLDDPELQAAASELLQHEHCTAEYAWQQVLKELSQQYQQLDDEYLQARYIDVDDLLH 377 H +LDDPEL +++E AEYA ++V ++ +D+EY++ R D+ D+ Sbjct: 77 HLLVLDDPELVDGIKGKIENEQMNAEYALKEVSDMFVSMFESMDNEYMKERAADIRDVSK 136 Query: 378 RTLVHLT-QTKEELPQFNSPTILLAENIYPSTVLQLDPAVVKGICLSAGTPLSHSALIAR 436 R L HL L T+++AE++ PS QL+ VKG G SHSA+++R Sbjct: 137 RVLGHLIGVETGSLATIAEETVIIAEDLTPSDTAQLNKQFVKGFATDIGGRTSHSAIMSR 196 Query: 437 ELGIGWICQQGEKLYAIQPEETLTLD 462 L I + E IQ + + +D Sbjct: 197 SLEIPAVVGTKEVTEKIQHGDMVIVD 222
>ADHESNFAMILY#Adhesin family signature. Length = 309 Score = 27.9 bits (62), Expect = 0.032 Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 6/58 (10%) Query: 33 IGDAD----HGLNMNRGFGKVVEKLP--AIADKDIGFILKNTGMTLLSSVGGASGPLF 84 +AD +G+N+ G KL A ++ + + G+ ++ G Sbjct: 79 TSEADLIFYNGINLETGGNAWFTKLVENAKKTENKDYFAVSDGVDVIYLEGQNEKGKE 136
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 244 bits (625), Expect = 7e-76 Identities = 91/363 (25%), Positives = 155/363 (42%), Gaps = 33/363 (9%) Query: 308 QMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQA 367 + S+L S + + + + ++ +++ GE G GK L+++A Sbjct: 120 AEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARA 179 Query: 368 IHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDNENGRLSRLELAHGGTLFLEK 424 +H+ +R GP++A+N + E G G T + R E A GGTLFL++ Sbjct: 180 LHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDE 239 Query: 425 IEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYA 484 I + ++ Q+ LL+V++QG T + R I DV+++A T DL + Q F LYY Sbjct: 240 IGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYR 299 Query: 485 LHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELY 544 L+ + +PPLR R IP LV + ++ EK + D +AL + + WPGN EL Sbjct: 300 LNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKEGLDVKRFDQEALELMKAHPWPGNVRELE 359 Query: 545 SVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTS------------------- 585 +++ L I + L +E + + Sbjct: 360 NLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASF 419 Query: 586 -----------LSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQ 634 AE+E I+ A T G + + LLG+ R TL +K+++ G+ + Sbjct: 420 GDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGVSVYR 479 Query: 635 FKR 637 R Sbjct: 480 SSR 482
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 33.8 bits (77), Expect = 0.002 Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 5/79 (6%) Query: 46 VLEQRGVTEAPATVVTTVPQSVSQMVVPVETSSPAVNIVLSEPVADVTPES-----VDPW 100 + Q APA ++ + + + P P +V EP + PE V Sbjct: 36 SVHQVIELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIE 95 Query: 101 RPQPKPQNEALPTPAVEQS 119 +P+PKP+ + P VEQ Sbjct: 96 KPKPKPKPKPKPVKKVEQP 114
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 59.0 bits (143), Expect = 5e-12 Identities = 72/371 (19%), Positives = 128/371 (34%), Gaps = 81/371 (21%) Query: 1 MKILVTGATSGLGRNAVQYLLQSGESVVATGR-------NCEVGR--SLTNAGAQFVALD 51 MK LVTGA +G + + LL++G VV + + R L G QF +D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 52 LTEATEDDCARLMD--GCDAVWHCAAKSS---PWGDKTAFWLANVKVTHTLAQAAGRLNI 106 L + + L + V+ + + + A+ +N+ + + I Sbjct: 61 LADR--EGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKI 118 Query: 107 PRFIHISTPAVY-------FDFQHHYDLPETYLARAFSSHYASSKYAAEQVIAGAVSRYS 159 ++ S+ +VY F D P S YA++K A E ++A S Sbjct: 119 QHLLYASSSSVYGLNRKMPFSTDDSVDHPV--------SLYAATKKANE-LMAHTYSHLY 169 Query: 160 ATRFILLRPRGLFGPH---DQVIVPRLMQQLQQGGGCLRLPRGGDALLDLTFVQNVVYA- 215 LR ++GP D + L+ G + + G D T++ ++ A Sbjct: 170 GLPATGLRFFTVYGPWGRPDMALFKFTKAMLE--GKSIDVYNYGKMKRDFTYIDDIAEAI 227 Query: 216 MRLATNV---------------EGLRSGSIYNISNHQPQQLSVMLDALLHQQLGLSYRIA 260 +RL + + +YNI N P +L + A L LG+ + Sbjct: 228 IRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQA-LEDALGIEAKKN 286 Query: 261 AVPWSLLSLIARGLELYGKCVNQEPVITRYSAGTLCFDMTLSAQKAITELGYRPRFSMEQ 320 +P Q + SA T + +G+ P +++ Sbjct: 287 MLPL------------------QPGDVLETSADT---------KALYEVIGFTPETTVKD 319 Query: 321 GIAITGQWLRE 331 G+ W R+ Sbjct: 320 GVKNFVNWYRD 330
>SECA#SecA protein signature. Length = 901 Score = 57.2 bits (138), Expect = 2e-12 Identities = 16/28 (57%), Positives = 20/28 (71%) Query: 125 IDGTRPQFGRNDPCPCGSGKKFKKCCGQ 152 + GRNDPCPCGSGKK+K+C G+ Sbjct: 872 AQTGERKVGRNDPCPCGSGKKYKQCHGR 899
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 89.1 bits (221), Expect = 8e-22 Identities = 40/152 (26%), Positives = 64/152 (42%), Gaps = 3/152 (1%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 IL+ +D+ R++L+ S G + ++ + DL++ D+ MP N L Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 70 LEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSMF 129 L I+ PVLV+SA KA G D L KP DL L ++ L + Sbjct: 66 LPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPF-DLTELIGIIGRAL--AEP 122 Query: 130 NSRVEEEERLFRDWDAMVDNPAAAAKLLQELQ 161 R + E +D +V AA ++ + L Sbjct: 123 KRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLA 154
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 30.6 bits (69), Expect = 0.008 Identities = 9/16 (56%), Positives = 11/16 (68%) Query: 55 VVGESGCGKSTFARAI 70 + GESG GK ARA+ Sbjct: 165 ITGESGTGKELVARAL 180
>adhesinmafb#Neisseria meningitidis: adhesin MafB signature. Length = 467 Score = 31.2 bits (70), Expect = 4e-04 Identities = 16/57 (28%), Positives = 20/57 (35%), Gaps = 2/57 (3%) Query: 41 GPMPAVDSNDPGAAGFTGSTVIAEFESLEAAQAWADADPYVAAGVYEHVSVKPFKKV 97 P+PA G GS E + EA W +P A V +V KV Sbjct: 268 APLPA--EGKFAVIGGLGSVAGFEKNTREAVDRWIQENPNAAETVEAVFNVAAAAKV 322
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 114 bits (286), Expect = 2e-30 Identities = 61/414 (14%), Positives = 128/414 (30%), Gaps = 105/414 (25%) Query: 11 VVAIGILLAGVVFFIW-WVSK--------GRFIQTTDDAYIGGNITTVTSKVSGYISAIE 61 +VA I+ V+ FI + + G+ G + + + I Sbjct: 59 LVAYFIMGFLVIAFILSVLGQVEIVATANGKLT-------HSGRSKEIKPIENSIVKEII 111 Query: 62 VRDNQSVKKGDIILRLDDRDYRANVARLEAKIKSSKANLESIQATI-------------- 107 V++ +SV+KGD++L+L A+ + ++ + ++ Q Sbjct: 112 VKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLP 171 Query: 108 -------------AMQQSIIQSASETWQAVKHEEQKRLRD--------TERYEKLAQSAA 146 S+I+ TWQ K++++ L R + + Sbjct: 172 DEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSR 231 Query: 147 ISQQIIDNAR-------FDYQQVAAKERKAANDFLVEKQRLAVLSAQEENVRASIEEVQA 199 + + +D+ V +E K L V +Q E + + I + Sbjct: 232 VEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEA----VNELRVYKSQLEQIESEILSAKE 287 Query: 200 ALTQ-----------------------------ALLDLEYTLVRAPIDGIVANRSAHT-G 229 + +++RAP+ V HT G Sbjct: 288 EYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEG 347 Query: 230 SWVEGGTSLVSLVPVSE-LWVDANYKENQIAGMKPGMKAEIRADILKGEVFH---GHIES 285 V +L+ +VP + L V A + I + G A I+ + + G +++ Sbjct: 348 GVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKN 407 Query: 286 LSPATGASFSLIPIENATGNFTKIVQRVPVRIAFDDAKELKQLLRPGLSVTVSV 339 ++ + G ++ + K + L G++VT + Sbjct: 408 INLDA-------IEDQRLGLVFNVIISIEENCLSTGNKNIP--LSSGMAVTAEI 452
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 103 bits (259), Expect = 5e-26 Identities = 80/418 (19%), Positives = 170/418 (40%), Gaps = 21/418 (5%) Query: 3 SMRKHIAFASMCMGLFIAQLDIQIVSSSLNEIGGGLSAGKDEMAWLQTSYLIAEIIVIPL 62 ++R + +C+ F + L+ +++ SL +I + W+ T++++ I + Sbjct: 9 NLRHNQILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAV 68 Query: 63 SGWLSRVFSTRWLFTLSAGIFTLMSIACGLAWN-IQIMIFFRALQGAAGASMIPLVFTTA 121 G LS + L I S+ + + ++I R +QGA A+ LV Sbjct: 69 YGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVV 128 Query: 122 FIYYQGKELGLAAAVVSALASLSPTLGPTLGGWITDNLDWRWLFYINILPGIYLVLSIPF 181 Y + G A ++ ++ ++ +GP +GG I + W +L I ++ ++++PF Sbjct: 129 ARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMI----TIITVPF 184 Query: 182 LVNFDKPDLSLLKVADYPSIILLAMTLGCLEYTLEEGARWGWLDDNTIFLTSVLALVSFI 241 L+ K ++ + D IIL+++ + +L +++++SF+ Sbjct: 185 LMKLLKKEVRIKGHFDIKGIILMSVGIVFFMLFTTS-YSISFL---------IVSVLSFL 234 Query: 242 LFAARTLTISNPIMDLHAFKDKNFTLGCFFSFSGGVGIFSTVYLIPVFLGRVRGLNAEEI 301 +F +++P +D K+ F +G + V ++P + V L+ EI Sbjct: 235 IFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEI 294 Query: 302 GFAVCTTG-IFQLFSVPFYFWLSKKINLRWLLMAGLGGFVFSMYL--FTPITHEWGWQEL 358 G + G + + L + ++L G+ S F T W + + Sbjct: 295 GSVIIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSW-FMTI 353 Query: 359 LFPQAIRGISQQFAMAPIVTLTLGGIPKERLKLASGVFNLTRNLGGAIGIALCGSILN 416 + + G+S F I T+ + ++ + N T L GIA+ G +L+ Sbjct: 354 IIVFVLGGLS--FTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLS 409
>PF06291#Lambda prophage Bor protein Length = 102 Score = 29.2 bits (65), Expect = 0.002 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 6/51 (11%) Query: 1 MKKVAALVALSLLMAGC------VSSDKIAVTPEQLQHHRFVLESVNGKPV 45 MKK+ AL++L+ GC V + AVTP++ H F + + K Sbjct: 6 MKKMLFSAALAMLITGCAQQTFTVGNKPTAVTPKETITHHFFVSGIGQKKT 56
>PF03944#delta endotoxin Length = 633 Score = 32.7 bits (74), Expect = 0.025 Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 3/120 (2%) Query: 1776 NNATGFDITTNEGNISLAGSMQVGDFSTGMDLNGNNNSVTLAAKDLNVTGQKATGVNVSG 1835 NN T I+ GN + + + + L GN NS L + ++ G V ++G Sbjct: 505 NNQTRTFISEKFGNQGDSLRFEQNNTTARYTLRGNGNSYNLYLR-VSSIGNSTIRVTING 563 Query: 1836 DANTINITGNVLVDKDQTADNAADYFYDPSVGINVSGSNNNVTLDGKLTVVADSELTTRN 1895 T N + D DN A F D ++G V+ SN++V LD +T+ + ++ N Sbjct: 564 RVYTATNV-NTTTNNDGVNDNGAR-FSDINIGNVVASSNSDVPLDINVTLNSGTQFDLMN 621
>FIMBRIALPAPF#Escherichia coli: P pili tip fibrillum papF protein signature. Length = 167 Score = 31.6 bits (71), Expect = 7e-04 Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 7/93 (7%) Query: 16 LFTATLQAADVTITVNGRVVAKPCTIQT-KEANVNLGDLYTRNLQQPGSASGWHNITLSL 74 L T+ ADV I + G V PCTI + V+ G++ N + ++ G +S+ Sbjct: 11 LLTSVAVLADVQINIRGNVYIPPCTINNGQNIVVDFGNI---NPEHVDNSRGEVTKNISI 67 Query: 75 TDCPIETSAVTAIVTGSTDNTGYYKNEGTAENI 107 + CP ++ ++ VTG+T G +N A NI Sbjct: 68 S-CPYKSGSLWIKVTGNTMGVG--QNNVLATNI 97
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 940 bits (2432), Expect = 0.0 Identities = 499/869 (57%), Positives = 653/869 (75%), Gaps = 10/869 (1%) Query: 15 QVLILPRFARLTFALGLATAVFPVDAEYYFNPRFLSNDLAESVDLSAFTKGREAPPGTYR 74 + + F RL A A AE YFNPRFL++D DLS F G+E PPGTYR Sbjct: 20 KHRLAGFFVRLFVACAFAAQAPLSSAELYFNPRFLADDPQAVADLSRFENGQELPPGTYR 79 Query: 75 VDIYLNDEFMASRDITFIADDNNADLIPCLSTDLLVSLGIKKSALLDNKEHSADKHVPDN 134 VDIYLN+ +MA+RD+TF D+ ++PCL+ L S+G+ +++ + ++ + Sbjct: 80 VDIYLNNGYMATRDVTFNTGDSEQGIVPCLTRAQLASMGLNTASV-------SGMNLLAD 132 Query: 135 SACTPLQDRLADASSEFDVGQQHLSLSVPQIYVGRMARGYVSPDLWEEGINAGLLNYSFN 194 AC PL + DA+++ DVGQQ L+L++PQ ++ ARGY+ P+LW+ GINAGLLNY+F+ Sbjct: 133 DACVPLTSMIHDATAQLDVGQQRLNLTIPQAFMSNRARGYIPPELWDPGINAGLLNYNFS 192 Query: 195 GNSINNRSNHNAGKSNYAYLNLQSGINIGSWRLRDNSTWSYNSGSSNSSDSNKWQHINTS 254 GNS N G S+YAYLNLQSG+NIG+WRLRDN+TWSYNS S+S NKWQHINT Sbjct: 193 GNS---VQNRIGGNSHYAYLNLQSGLNIGAWRLRDNTTWSYNSSDSSSGSKNKWQHINTW 249 Query: 255 AERDIIPLRSRLTVGDSYTDGDIFDSVNFRGLKINSTEAMLPDSQHGFAPVIHGIARGTA 314 ERDIIPLRSRLT+GD YT GDIFD +NFRG ++ S + MLPDSQ GFAPVIHGIARGTA Sbjct: 250 LERDIIPLRSRLTLGDGYTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPVIHGIARGTA 309 Query: 315 QVSVKQNGYDVYQTTVPPGPFTIDDINSAANGGDLQVTIKEADGSIQTLYVPYSSVPVLQ 374 QV++KQNGYD+Y +TVPPGPFTI+DI +A N GDLQVTIKEADGS Q VPYSSVP+LQ Sbjct: 310 QVTIKQNGYDIYNSTVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQ 369 Query: 375 RAGYTRYALAMGEYRSGNNLQSSPKFVQASLMHGLKGNWTPYGGMQIAEDYQAFNLGIGK 434 R G+TRY++ GEYRSGN Q P+F Q++L+HGL WT YGG Q+A+ Y+AFN GIGK Sbjct: 370 REGHTRYSITAGEYRSGNAQQEKPRFFQSTLLHGLPAGWTIYGGTQLADRYRAFNFGIGK 429 Query: 435 DLGLFGAFSFDITQANTTLADDTRHSGQSVKSVYSKSFYQTGTNIQVAGYRYSTQGFYNL 494 ++G GA S D+TQAN+TL DD++H GQSV+ +Y+KS ++GTNIQ+ GYRYST G++N Sbjct: 430 NMGALGALSVDMTQANSTLPDDSQHDGQSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNF 489 Query: 495 SDSAYSRMSGYTVKPPTGDTSEQTLFIDYFNLFYSKRGQEQISISQQLGHYGTTFFSASR 554 +D+ YSRM+GY ++ G + F DY+NL Y+KRG+ Q++++QQLG T + S S Sbjct: 490 ADTTYSRMNGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRTSTLYLSGSH 549 Query: 555 QSYWNTSRSDQQISFGLNVPLGDITTSLNYSYSNNIWQNDRDHLLAFTLNVPFSHWMRTD 614 Q+YW TS D+Q GLN DI +L+YS + N WQ RD +LA +N+PFSHW+R+D Sbjct: 550 QTYWGTSNVDEQFQAGLNTAFEDINWTLSYSLTKNAWQKGRDQMLALNVNIPFSHWLRSD 609 Query: 615 SQSAFRNSNASYSMSNDLKGGMTNLSGVYGTLLPDNNLNYSVQVGNTQGGNTSSGTSGYS 674 S+S +R+++ASYSMS+DL G MTNL+GVYGTLL DNNL+YSVQ G GG+ +SG++GY+ Sbjct: 610 SKSQWRHASASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGDGNSGSTGYA 669 Query: 675 SLNYRGAYGNTNVGYSRSGDSSQIYYGMSGGIIAHADGITFGQPLGDTMVLVKAPGADNV 734 +LNYRG YGN N+GYS S D Q+YYG+SGG++AHA+G+T GQPL DT+VLVKAPGA + Sbjct: 670 TLNYRGGYGNANIGYSHSDDIKQLYYGVSGGVLAHANGVTLGQPLNDTVVLVKAPGAKDA 729 Query: 735 KIENQTGIHTDWRGYAILPFATEYRENRVALNANSLADNVELDETVVTVIPTHGAIARAT 794 K+ENQTG+ TDWRGYA+LP+ATEYRENRVAL+ N+LADNV+LD V V+PT GAI RA Sbjct: 730 KVENQTGVRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVPTRGAIVRAE 789 Query: 795 FNAQIGGKVLMTLKYGNKSVPFGAIVTHGENKNGSIVAENGQVYLTGLPQSGKLQVSWGN 854 F A++G K+LMTL + NK +PFGA+VT +++ IVA+NGQVYL+G+P +GK+QV WG Sbjct: 790 FKARVGIKLLMTLTHNNKPLPFGAMVTSESSQSSGIVADNGQVYLSGMPLAGKVQVKWGE 849 Query: 855 DKNSNCIVDYKLPAVSPGTLLNQQTAICR 883 ++N++C+ +Y+LP S LL Q +A CR Sbjct: 850 EENAHCVANYQLPPESQQQLLTQLSAECR 878
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 53.7 bits (129), Expect = 6e-10 Identities = 40/192 (20%), Positives = 84/192 (43%), Gaps = 8/192 (4%) Query: 36 LSDIAHSFHMQTAQVGIMLTIYAWVVALMSLPFMLMTSQVERRKLLICLFVVFIASHVLS 95 L DIA+ F+ A + T + ++ + + ++ Q+ ++LL+ ++ V+ Sbjct: 37 LPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIG 96 Query: 96 FLSWS-FTVLVISRIGVAFAHAIFWSITASLAIRMAPAGKRAQALSLIATGTALAMVLGL 154 F+ S F++L+++R A F ++ + R P R +A LI + A+ +G Sbjct: 97 FVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGP 156 Query: 155 PLGRIVGQYFGWRMTFFAIGIGALLTLLCLIKLLPLLPSEHSGSLKSLPLLFRRPALMSI 214 +G ++ Y W I + ++T+ L+KLL + LMS+ Sbjct: 157 AIGGMIAHYIHWSY-LLLIPMITIITVPFLMKLLK------KEVRIKGHFDIKGIILMSV 209 Query: 215 YLLTVVVVTAHY 226 ++ ++ T Y Sbjct: 210 GIVFFMLFTTSY 221
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 42.5 bits (100), Expect = 2e-06 Identities = 42/239 (17%), Positives = 82/239 (34%), Gaps = 18/239 (7%) Query: 7 RSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLI---GYAMTIALTIGVVFSLGF 63 R +L++ L +G G +P + L R S D+ G + + + + Sbjct: 5 RPLIVILSTVALDAVGIGLIMPVLPGLL-RDLVHSNDVTAHYGILLALYALMQFACAPVL 63 Query: 64 GILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFATVLKAWFAD 123 G L+D+F ++ +L+++ A + + + ++ + + + A A+ AD Sbjct: 64 GALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAG-AYIAD 122 Query: 124 NLSSTSKTKIFSINYTMLNIGWTIGPPLGTLLVMQSINLPFWLAAICSAFPMLFIQIWVK 183 + + F G GP LG L+ S + PF+ AA + L + Sbjct: 123 ITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLP 182 Query: 184 RSEK---------IIATETGSVWSPKVLLQDKALLWFTCSGFLASFVSGAFASCISQYV 233 S K + W + A L F+ V A+ + Sbjct: 183 ESHKGERRPLRREALNPLASFRW--ARGMTVVAALMAV--FFIMQLVGQVPAALWVIFG 237 Score = 32.1 bits (73), Expect = 0.003 Identities = 22/155 (14%), Positives = 60/155 (38%), Gaps = 2/155 (1%) Query: 7 RSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVF-SLGFGI 65 +AL+A ++ + I+ ++ IG ++ + + ++ G Sbjct: 210 TVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGP 269 Query: 66 LADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFATVLKAWFADNL 125 +A + ++R ++L + A +G+I + + L+ + L+A + + Sbjct: 270 VAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASG-GIGMPALQAMLSRQV 328 Query: 126 SSTSKTKIFSINYTMLNIGWTIGPPLGTLLVMQSI 160 + ++ + ++ +GP L T + SI Sbjct: 329 DEERQGQLQGSLAALTSLTSIVGPLLFTAIYAASI 363
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 100 bits (251), Expect = 9e-28 Identities = 70/244 (28%), Positives = 114/244 (46%), Gaps = 16/244 (6%) Query: 2 IVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQ---LDVRNR 58 I +TGA G GE + R QG + A E+L+++ L A+ DVR+ Sbjct: 10 IAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDS 69 Query: 59 AAIEEMLASLPAEWSNIDILVNNAGLALGMEPAHKASIEDWETMIDTNNKGLVYMTRAVL 118 AAI+E+ A + E IDILVN AG+ L H S E+WE N+ G+ +R+V Sbjct: 70 AAIDEITARIEREMGPIDILVNVAGV-LRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128 Query: 119 PGMVERNHGHIINIGSTAGSWPYAGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPG 178 M++R G I+ +GS P Y ++KA F+ L +L +R + PG Sbjct: 129 KYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPG 188 Query: 179 LVGGTEFSNVRFKGDDGKAE------KTYQNTVALT----PEDVSEAV-WWVSTLPAHVN 227 T+ + ++G + +T++ + L P D+++AV + VS H+ Sbjct: 189 ST-ETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHIT 247 Query: 228 INTL 231 ++ L Sbjct: 248 MHNL 251
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 48.0 bits (114), Expect = 4e-08 Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 16/118 (13%) Query: 44 VGAFIFGKMGDRIGRKKVLFITITMMGICTTLIGVLPTYAQIGVFAPILLVTLRIIQGLG 103 +G ++GK+ D++G K++L I + + + V ++ + + A R IQG G Sbjct: 64 IGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMA-------RFIQGAG 116 Query: 104 AGAEISGAGTMLAEYAPKGKR----GIISSFVAMGTNCGTLSATAI-----WAFMFFI 152 A A + ++A Y PK R G+I S VAMG G I W+++ I Sbjct: 117 AAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLI 174
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 29.4 bits (66), Expect = 0.027 Identities = 54/312 (17%), Positives = 105/312 (33%), Gaps = 18/312 (5%) Query: 61 FAGLLSDRFGRRPFIMLGMCCYMAFFFGILHTNNIIIAYVFGFLAGMANSFLDAGTYPSL 120 G LSDRFGRRP +++ + + + + + Y+ +AG+ + A + Sbjct: 62 VLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATG-AVAGAYI 120 Query: 121 MEAFPRSPGTANI-LIKAFVSSGQFLLPLIISLLVWAELWFGWSFMIAAGIMFINALFLY 179 + + + A G P++ L+ F AA + +N L Sbjct: 121 ADITDGDERARHFGFMSACFGFGMVAGPVLGGLM--GGFSPHAPFFAAAALNGLNFLTGC 178 Query: 180 RCTFPPHPGRHLPV---IKKTTSSTEHRCSIIDLASYSLYGYISMATFYLVSQWLAQYGQ 236 H G P+ +S + +A+ +I + + +G+ Sbjct: 179 FLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGE 238 Query: 237 FVAGMSYTM-SIKLLSIYTVGSLLCVFITAPLIRNTVRPTTLL--MLYTFISFIALLTVC 293 T I L + + SL IT P+ L+ M+ +I L Sbjct: 239 DRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFAT 298 Query: 294 LHPTFYVVIIFAFVIGFTSAGGVVQIGLTLMAERF--PYAKGKATGIYYSAGSIATFTIP 351 + +++ ++GG+ L M R +G+ G + S+ + P Sbjct: 299 RGWMAFPIMV------LLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGP 352 Query: 352 LITAHLSQRSIA 363 L+ + SI Sbjct: 353 LLFTAIYAASIT 364
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 31.4 bits (71), Expect = 0.007 Identities = 38/177 (21%), Positives = 75/177 (42%), Gaps = 9/177 (5%) Query: 12 ILAVLCIYFSYFLHGISVITLAQNMTSLAEKFSTDNAGIAYLISGIGLGRLISILFFGVI 71 IL LCI F ++ + L ++ +A F+ A ++ + L I +G + Sbjct: 15 ILIWLCIL--SFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKL 72 Query: 72 SDKFGRRAVILMAVIMY----LLFFFGIPACPNLTLAYCLAVCVGIANSALDTGGYPALM 127 SD+ G + ++L +I+ ++ F G L +A + A AL Sbjct: 73 SDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARY- 131 Query: 128 ECFPKTSGSAVILVKAMVSFGQMFYPMLVSYMLLNNIWYGYGLIIPGILFVLITLML 184 + G A L+ ++V+ G+ P + M+ + I + Y L+IP I + + ++ Sbjct: 132 -IPKENRGKAFGLIGSIVAMGEGVGP-AIGGMIAHYIHWSYLLLIPMITIITVPFLM 186
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 119 bits (301), Expect = 3e-39 Identities = 34/89 (38%), Positives = 55/89 (61%) Query: 4 TKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGR 63 K ++ + + L+K+D+ V+ F + L GE+V+L GFGNF++R++ R GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGR 62 Query: 64 NPKTGEDIPITARRVVTFRPGQKLKSRVE 92 NP+TGE+I I A +V F+ G+ LK V+ Sbjct: 63 NPQTGEEIKIKASKVPAFKAGKALKDAVK 91
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 31.2 bits (71), Expect = 0.002 Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 5/61 (8%) Query: 74 SNKAELTAIIARETGKPRWEAATEVTAMINKIAISIKAYHVRTGEQRSEMPDGAASLRHR 133 +NK +L A +A T + ++A V A+ + ++ + GE+ + G +R R Sbjct: 2 ANKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAK-----GEKVQLIGFGNFEVRER 56 Query: 134 P 134 Sbjct: 57 A 57
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 36.9 bits (85), Expect = 3e-05 Identities = 35/192 (18%), Positives = 55/192 (28%), Gaps = 58/192 (30%) Query: 2 PPRALLLV-DLQNDFCAGGALAVPEGDSTVDVANRLIDWCQSRGEAVI-----ASQD--- 52 P RA+LL+ D+QN F +L + C G V+ SQ+ Sbjct: 28 PNRAVLLIHDMQNYFVDAFTAGASPVTELSANIRKLKNQCVQLGIPVVYTAQPGSQNPDD 87 Query: 53 -------WHPANHGSFASQHGVEPYTPGQLDGLPQTFWPDHCVQNSEGAQLHPLLKQKAI 105 W P + + + P D + T W Sbjct: 88 RALLTDFWGPGLNSGPYEEKIITELAPEDDDLV-LTKW---------------------- 124 Query: 106 AAVFHKGENPLVDSYSAFFDNGRRQKTALDDWLRAHVINELIVMGLATDYCVKFTVLDAL 165 YSAF +T L + +R ++LI+ G+ T +A Sbjct: 125 -------------RYSAFK------RTNLLEMMRKEGRDQLIITGIYAHIGCLVTACEAF 165 Query: 166 QLGYKVNVITDG 177 K + D Sbjct: 166 MEDIKAFFVGDA 177
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 39.5 bits (92), Expect = 2e-05 Identities = 30/129 (23%), Positives = 50/129 (38%), Gaps = 1/129 (0%) Query: 65 ALMFGYFIGSLTGGFIGDYFGRRRAFRINLLIVGIAATGAAFVPDMY-WLIFFRFLMGTG 123 A M + IG+ G + D G +R ++I + + LI RF+ G G Sbjct: 57 AFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAG 116 Query: 124 MGALIMVGYASFTEFIPATVRGKWSARLSFVGNWSPMLSAAIGVVVIAFFSWRIMFLLGG 183 A + +IP RGK + + + AIG ++ + W + L+ Sbjct: 117 AAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPM 176 Query: 184 IGILLAWFL 192 I I+ FL Sbjct: 177 ITIITVPFL 185
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 31.0 bits (70), Expect = 0.011 Identities = 33/142 (23%), Positives = 48/142 (33%), Gaps = 23/142 (16%) Query: 71 MFLGALVGGIIGDKTGRRNAFILYEAIHIASMVVGAFSPNMDF-LIACRFVMGVGLGALL 129 +G V G + D+ G + + I+ V+G + LI RF+ G G A Sbjct: 62 FSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFP 121 Query: 130 VTLFAGFTEYMPGRNR----GTWSSRVSFIGNWSYPLCSLIAMGLTPLISA----EWNWR 181 + Y+P NR G S V+ + G+ P I +W Sbjct: 122 ALVMVVVARYIPKENRGKAFGLIGSIVA------------MGEGVGPAIGGMIAHYIHWS 169 Query: 182 VQLLIPAILSLIATALAWRYFP 203 LLIP I I T Sbjct: 170 YLLLIPMI--TIITVPFLMKLL 189
>INVEPROTEIN#Salmonella/Shigella invasion protein E (InvE) signature. Length = 372 Score = 28.9 bits (64), Expect = 0.021 Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 13/81 (16%) Query: 158 ETTSALHTYFNVGDIAKVSVSGLGDRFIDKVNDAKED-----------VLTDGIQTFPDR 206 E ++AL + N D K S S L + F ++V + + V ++ F + Sbjct: 57 EMSAALAQFRNRRDYEKKS-SNLSNSF-ERVLEDEALPKAKQILKLISVHGGALEDFLRQ 114 Query: 207 TDRVYLNPQDCSVINDEALNR 227 ++ +P D ++ E L R Sbjct: 115 ARSLFPDPSDLVLVLRELLRR 135
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 27.7 bits (61), Expect = 0.022 Identities = 18/61 (29%), Positives = 26/61 (42%) Query: 49 QGLSIGIIILTIGVMAPIASGTLPPSTLIHSFLNWKSLVAIAVGVIVSWLGGRGVTLMGS 108 Q +I L IG + + LPPS ++ N ++ A VS LG +TL G Sbjct: 174 QRSAIVDGGLHIGALQSLQPEDLPPSRVVLRDTNVTAVPASGAPAAVSVLGASELTLDGG 233 Query: 109 Q 109 Sbjct: 234 H 234
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 30.0 bits (67), Expect = 6e-04 Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 5/37 (13%) Query: 4 LSWIIFGLIAGILAKWIMPG-----KDGGGFFMTILL 35 + I+ G I+G++ W+ K ++ ILL Sbjct: 163 AAIIMRGYISGLMENWLFAPQSFDLKKEARDYVAILL 199
>FLAGELLIN#Flagellin signature. Length = 507 Score = 195 bits (496), Expect = 4e-59 Identities = 224/507 (44%), Positives = 276/507 (54%), Gaps = 73/507 (14%) Query: 2 AQVINTNSLSLITQNNINKNQSALSTSIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 61 AQVINTNSLSL+TQNN+NK+QS+LS++IERLSSGLRINSAKDDAAGQAIANRFTSNIKGL Sbjct: 1 AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60 Query: 62 TQAARNANDGISLAQTTEGALSEINNNLQRVRELTVQATTGTNSDSDLSSIQDEIKSRLD 121 TQA+RNANDGIS+AQTTEGAL+EINNNLQRVREL+VQAT GTNSDSDL SIQDEI+ RL+ Sbjct: 61 TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120 Query: 122 EIDRVSGQTQFNGVNVLAKDGSMKIQVGANDGQTISIDLQKIDSSTLGLNGFSVSGQSL- 180 EIDRVS QTQFNGV VL++D MKIQVGANDG+TI+IDLQKID +LGL+GF+V+G Sbjct: 121 EIDRVSNQTQFNGVKVLSQDNQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEA 180 Query: 181 ---NVSDSITQITGAAGAKPVGVDFTAVAKDLTTATGKTVDVSS---------------- 221 ++ S +TG + T T Sbjct: 181 TVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTDD 240 Query: 222 -------------------------------LTLHNTLDAKGAATSQFVVQSGNDFYSAS 250 +T D KG + + S Sbjct: 241 AENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGKVS 300 Query: 251 INHTDGKVTLNKADVEYTDTDNGLTTAATQKDQLIKVAADSDGSAAGYVTFQGKNYATTV 310 KVTL AD+ + T + K+ V K Sbjct: 301 TTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSDLEA 360 Query: 311 STALDDNTAAKATDNKVVVELSTAK-----PTAQFSGASSADPLALLDKAIAQVDTFRSS 365 + A+ + + + K T +S + + A A + + Sbjct: 361 NNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINEDAAAAKKSTANP 420 Query: 366 LGAVQN-----------------RLDSAVTNLNNTTTNLSEAQSRIQDADYATEVSNMSK 408 L ++ + R DSA+TNL NT TNL+ A+SRI+DADYATEVSNMSK Sbjct: 421 LASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIEDADYATEVSNMSK 480 Query: 409 AQIIQQAGNSVLSKANQVPQQVLSLLQ 435 AQI+QQAG SVL++ANQVPQ VLSLL+ Sbjct: 481 AQILQQAGTSVLAQANQVPQNVLSLLR 507
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 30.2 bits (68), Expect = 0.017 Identities = 10/57 (17%), Positives = 17/57 (29%), Gaps = 2/57 (3%) Query: 164 RFTLLPIFRIPVKMQKVSAASPLTQKPDQARRRF--RLGMLVFFGMLGWALLTAMNQ 218 R L R + + + A L + P R R M ++L + Sbjct: 26 RKQLDTPVREKDENEFLPAHLELIETPVSRRPRLVAYFIMGFLVIAFILSVLGQVEI 82
>PF01206#SirA family protein Length = 76 Score = 91.0 bits (226), Expect = 2e-28 Identities = 16/71 (22%), Positives = 37/71 (52%) Query: 7 DYRLDMVGEPCPYPAVATLEAMLQLKKGEILEVVSDCPQSINNIPLDARNHGYTVLDIQQ 66 D LD G CP P + + + + GE+L V++ P S+ + ++ G+ +L+ ++ Sbjct: 5 DQSLDATGLNCPLPILKAKKTLATMNAGEVLYVMATDPGSVKDFESFSKQTGHELLEQKE 64 Query: 67 DGPTIRYLIQK 77 + T + +++ Sbjct: 65 EDGTYHFRLKR 75
>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE signature. Length = 103 Score = 117 bits (294), Expect = 5e-38 Identities = 103/103 (100%), Positives = 103/103 (100%) Query: 2 SAIQGIEGVISQLQATAMSARAQESLPQPTISFAGQLHAALDRISDTQTAARTQAEKFTL 61 SAIQGIEGVISQLQATAMSARAQESLPQPTISFAGQLHAALDRISDTQTAARTQAEKFTL Sbjct: 1 SAIQGIEGVISQLQATAMSARAQESLPQPTISFAGQLHAALDRISDTQTAARTQAEKFTL 60 Query: 62 GEPGVALNDVMTDMQKASVSMQMGIQVRNKLVAAYQEVMSMQV 104 GEPGVALNDVMTDMQKASVSMQMGIQVRNKLVAAYQEVMSMQV Sbjct: 61 GEPGVALNDVMTDMQKASVSMQMGIQVRNKLVAAYQEVMSMQV 103
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 749 bits (1936), Expect = 0.0 Identities = 475/555 (85%), Positives = 511/555 (92%), Gaps = 5/555 (0%) Query: 3 ATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDGGA 62 +TA Q K LEWLNRLRANP+IPLIVAGSAAVA++VA++LWAK PDYRTLFSNLSDQDGGA Sbjct: 5 STATQPKPLEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGA 64 Query: 63 IVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKFGISQ 122 IV+QLTQMNIPYRF+ SGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKFGISQ Sbjct: 65 IVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKFGISQ 124 Query: 123 FSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRA 182 FSEQVNYQRALEGEL+RTIET+GPVK ARVHLAMPKPSLFVREQKSPSASVTV L PGRA Sbjct: 125 FSEQVNYQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRA 184 Query: 183 LDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRI 242 LDEGQISA+VHLVSSAVAGLPPGNVTLVDQ GHLLTQSNTSGRDLNDAQLK+A+DVE RI Sbjct: 185 LDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRI 244 Query: 243 QRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSG 302 QRRIEAILSPIVGNGN+HAQVTAQLDFA+KEQTEE Y PNGD S A LRSRQLN SEQ G Sbjct: 245 QRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVG 304 Query: 303 SGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQ--QASTTSNS---GPRSTQRNETSN 357 +GYPGGVPGALSNQPAP N API+TPP NQ N Q Q ST++NS GPRSTQRNETSN Sbjct: 305 AGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRSTQRNETSN 364 Query: 358 YEVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGKPLPLSNEQMKQIEALTREAMGFSEK 417 YEVDRTIRHTKMNVGD++RLSVAVVVNYKTL DGKPLPL+ +QMKQIE LTREAMGFS+K Sbjct: 365 YEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKPLPLTADQMKQIEDLTREAMGFSDK 424 Query: 418 RGDSLNVVNSPFNSSDESGGALPFWQQQAFIDQLLAAGRWLLVLLVAWLLWRKAVRPQLT 477 RGD+LNVVNSPF++ D +GG LPFWQQQ+FIDQLLAAGRWLLVL+VAW+LWRKAVRPQLT Sbjct: 425 RGDTLNVVNSPFSAVDNTGGELPFWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVRPQLT 484 Query: 478 RRAEAVKTVQQQALAREEVEDAVEVRLSKDEQLQQRRANQRLGAEVMSQRIREMSDNDPR 537 RR E K Q+QA R+E E+AVEVRLSKDEQLQQRRANQRLGAEVMSQRIREMSDNDPR Sbjct: 485 RRVEEAKAAQEQAQVRQETEEAVEVRLSKDEQLQQRRANQRLGAEVMSQRIREMSDNDPR 544 Query: 538 VVALVIRQWINNDHE 552 VVALVIRQW++NDHE Sbjct: 545 VVALVIRQWMSNDHE 559
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 341 bits (876), Expect = e-119 Identities = 117/329 (35%), Positives = 197/329 (59%), Gaps = 2/329 (0%) Query: 1 MSNLTGTDKSVILLMTIGEDRAAEVFKHLSQREVQTLSAAMANVTQISNKQLTDVLAEFE 60 +S LTG K+ ILL++IG + +++VFK+LSQ E+++L+ +A + I+++ +VL EF+ Sbjct: 12 VSALTGKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKDNVLLEFK 71 Query: 61 QEAEQFAALNINANDYLRSVLVKALGEERAASLLEDILETRDTASGIETLNFMEPQSAAD 120 + + DY R +L K+LG ++A ++ + L + + E + +P + + Sbjct: 72 ELMMAQEFIQKGGIDYARELLEKSLGTQKAVDIINN-LGSALQSRPFEFVRRADPANILN 130 Query: 121 LIRDEHPQIIATILVHLKRAQAADILALFDERLRHDVMLRIATFGGVQPAALAELTEVLN 180 I+ EHPQ IA IL +L +A+ IL+ ++ +V RIA P + E+ VL Sbjct: 131 FIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVREVERVLE 190 Query: 181 GLLDGQ-NLKRSKMGGVRTAAEIINLMKTQQEEAVITAVREFDGELAQKIIDEMFLFENL 239 L + + GGV EIIN+ + E+ +I ++ E D ELA++I +MF+FE++ Sbjct: 191 KKLASLSSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEIKKKMFVFEDI 250 Query: 240 VDVDDRSIQRLLQEVDSESLLIALKGAEQPLREKFLRNMSQRAADILRDDLANRGPVRLS 299 V +DDRSIQR+L+E+D + L ALK + P++EK +NMS+RAA +L++D+ GP R Sbjct: 251 VLLDDRSIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDMEFLGPTRRK 310 Query: 300 QVENEQKAILLIVRRLAETGEMVIGSGED 328 VE Q+ I+ ++R+L E GE+VI G + Sbjct: 311 DVEESQQKIVSLIRKLEEQGEIVISRGGE 339
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 369 bits (948), Expect = e-133 Identities = 221/228 (96%), Positives = 225/228 (98%) Query: 1 MSDNLPWETWTPDDLAPPPAEFVPMVESEETIIEEAEPSLEQQLAQLQMQAHEQGYQAGI 60 MSDNLPW+TWTPDDLAPP AEFVP+VE EETIIEEAEPSLEQQLAQLQMQAHEQGYQAGI Sbjct: 1 MSDNLPWKTWTPDDLAPPQAEFVPIVEPEETIIEEAEPSLEQQLAQLQMQAHEQGYQAGI 60 Query: 61 AEGRQQGHEQGYQEGLAQGLEQGLAEAKAQQAPIHARMQQLVSEFQTTLDALDSVIASRL 120 AEGRQQGH+QGYQEGLAQGLEQGLAEAK+QQAPIHARMQQLVSEFQTTLDALDSVIASRL Sbjct: 61 AEGRQQGHKQGYQEGLAQGLEQGLAEAKSQQAPIHARMQQLVSEFQTTLDALDSVIASRL 120 Query: 121 MQMALEAARQVIGQTPTVDNSALIKQIQQLLQQEPLFSGKPQLRVHPDDLQRVDDMLSAT 180 MQMALEAARQVIGQTPTVDNSALIKQIQQLLQQEPLFSGKPQLRVHPDDLQRVDDML AT Sbjct: 121 MQMALEAARQVIGQTPTVDNSALIKQIQQLLQQEPLFSGKPQLRVHPDDLQRVDDMLGAT 180 Query: 181 LSLHGWRLRGDPTLHPGGCKVSADEGDLDASVATRWQELCRLAAPGVV 228 LSLHGWRLRGDPTLHPGGCKVSADEGDLDASVATRWQELCRLAAPGVV Sbjct: 181 LSLHGWRLRGDPTLHPGGCKVSADEGDLDASVATRWQELCRLAAPGVV 228
>FLGFLIJ#Flagellar FliJ protein signature. Length = 147 Score = 202 bits (515), Expect = 2e-70 Identities = 146/147 (99%), Positives = 147/147 (100%) Query: 1 MAEHGALATLKDLAEKEVEDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRNNLNSDMSAG 60 MAEHGALATLKDLAEKEVEDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRNNLNSDMSAG Sbjct: 1 MAEHGALATLKDLAEKEVEDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRNNLNSDMSAG 60 Query: 61 MTSNRWINYQQFIQTLEKAITQHRQQLNQWTQKVDIALNSWREKKQRLQAWQTLQERQST 120 +TSNRWINYQQFIQTLEKAITQHRQQLNQWTQKVDIALNSWREKKQRLQAWQTLQERQST Sbjct: 61 ITSNRWINYQQFIQTLEKAITQHRQQLNQWTQKVDIALNSWREKKQRLQAWQTLQERQST 120 Query: 121 AALLAENRLDQKKMDEFAQRAAMRKPE 147 AALLAENRLDQKKMDEFAQRAAMRKPE Sbjct: 121 AALLAENRLDQKKMDEFAQRAAMRKPE 147
>FLGHOOKFLIK#Flagellar hook-length control protein signature. Length = 375 Score = 468 bits (1204), Expect = e-168 Identities = 367/375 (97%), Positives = 369/375 (98%) Query: 1 MIRLAPLITADVDTTTLPGGKASDAAQDFLALLSEALAGETTTDKAAPQLLVATDKPTTK 60 MIRLAPLITADVDTTTLPGGKASDAAQDFLALLSEALAGETTTDKAAPQLLVATDKPTTK Sbjct: 1 MIRLAPLITADVDTTTLPGGKASDAAQDFLALLSEALAGETTTDKAAPQLLVATDKPTTK 60 Query: 61 GEPLVSDIVSDAQQADLLIPVDETLPVINDEQSTSTPLTTAQTMTLAAVADNNTAKDEKA 120 GEPL+SDIVSDAQQA+LLIPVDET PVINDEQSTSTPLTTAQTM LAAVAD NT KDEKA Sbjct: 61 GEPLISDIVSDAQQANLLIPVDETPPVINDEQSTSTPLTTAQTMALAAVADKNTTKDEKA 120 Query: 121 DDLNEDVTASLSALFAMLPGFDNTPKVTDAPSTVLPTEKPTLFTKLTSAQLTTAQPDDAP 180 DDLNEDVTASLSALFAMLPGFDNTPKVTDAPSTVLPTEKPTLFTKLTS QLTTAQPDDAP Sbjct: 121 DDLNEDVTASLSALFAMLPGFDNTPKVTDAPSTVLPTEKPTLFTKLTSEQLTTAQPDDAP 180 Query: 181 GTPAQPLTPLVAEAQSKAEVISTPSPVTAAASPLITPHQTQPLPTVAAPVLSAPLGSHEW 240 GTPAQPLTPLVAEAQSKAEVISTPSPVTAAASPLITPHQTQPLPTVAAPVLSAPLGSHEW Sbjct: 181 GTPAQPLTPLVAEAQSKAEVISTPSPVTAAASPLITPHQTQPLPTVAAPVLSAPLGSHEW 240 Query: 241 QQSLSQHISLFTRQGQQSAELRLHPQDLGEVQISLKVDDNQAQIQMVSPHQHVRAALEAA 300 QQSLSQHISLFTRQGQQSAELRLHPQDLGEVQISLKVDDNQAQIQMVSPHQHVRAALEAA Sbjct: 241 QQSLSQHISLFTRQGQQSAELRLHPQDLGEVQISLKVDDNQAQIQMVSPHQHVRAALEAA 300 Query: 301 LPVLRTQLAESGIQLGQSNISGESFSGQQQAASQQQQSQRTANHEPLTGEDDDTLPVPVS 360 LPVLRTQLAESGIQLGQSNISGESFSGQQQAASQQQQSQRTANHEPL GEDDDTLPVPVS Sbjct: 301 LPVLRTQLAESGIQLGQSNISGESFSGQQQAASQQQQSQRTANHEPLAGEDDDTLPVPVS 360 Query: 361 LQGRVTGNSGVDIFA 375 LQGRVTGNSGVDIFA Sbjct: 361 LQGRVTGNSGVDIFA 375
>FLGMOTORFLIM#Flagellar motor switch protein FliM signature. Length = 344 Score = 381 bits (979), Expect = e-135 Identities = 85/324 (26%), Positives = 148/324 (45%), Gaps = 10/324 (3%) Query: 5 ILSQAEIDALLNGDS--EVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFA 62 +LSQ EID LL S + E +S I YD + +E+++ L +++E FA Sbjct: 4 VLSQDEIDQLLTAISSGDASIEDARPISDTRKITLYDFRRPDKFSKEQMRTLSLMHETFA 63 Query: 63 RHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSL 122 R L LR + V ++ Y EF R++P P+ L +I + PL+G ++ PS+ Sbjct: 64 RLTTTSLSAQLRSMVHVHVASVDQLTYEEFIRSIPTPSTLAVITMDPLKGNAVLEVDPSI 123 Query: 123 VFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRS 182 F +D LFGG G+ KV+ R+ T E V+ ++ L ++W + L + Sbjct: 124 TFSIIDRLFGGTGQ-AAKVQ-RDLTDIENSVMEGVIVRILANVRESWTQVIDLRPRLGQI 181 Query: 183 EMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENS--R 240 E +F I P+++VV ++G G N C+P+ IEP+ L + +S R Sbjct: 182 ETNPQFAQI-VPPSEMVVLVTLETKVGEEEGMMNFCIPYITIEPIISKLSSQFWFSSVRR 240 Query: 241 NEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLKPGDVLPIEKP---DRIIAHVD 297 + + L ++ +++VA + L + IL L+ GD++ + D + + Sbjct: 241 SSTTQYMGVLRDKLSTVDMDVVAEVGSLRLSVRDILGLRVGDIIRLHDTHVGDPFVLSIG 300 Query: 298 GVPVLTSQYGTLNGQYALRIEHLI 321 Q G + + A +I I Sbjct: 301 NRKKFLCQPGVVGKKIAAQILERI 324
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 208 bits (532), Expect = 3e-73 Identities = 123/137 (89%), Positives = 133/137 (97%) Query: 1 MSDMNNPADDNNGAMDDMWAEALSEQKSTSGKSAADAMFQQFGGGDVSGTLQDIDLIMDI 60 MSDMNNP+D+N GA+DD+WA+AL+EQK+T+ KSAADA+FQQ GGGDVSG +QDIDLIMDI Sbjct: 1 MSDMNNPSDENTGALDDLWADALNEQKATTTKSAADAVFQQLGGGDVSGAMQDIDLIMDI 60 Query: 61 PVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGV 120 PVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGV Sbjct: 61 PVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGV 120 Query: 121 RITDIITPSERMRRLSR 137 RITDIITPSERMRRLSR Sbjct: 121 RITDIITPSERMRRLSR 137
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 333 bits (856), Expect = e-119 Identities = 244/245 (99%), Positives = 244/245 (99%) Query: 1 MRRLFSVAPVLLWLITPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLM 60 MRRL SVAPVLLWLITPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLM Sbjct: 1 MRRLLSVAPVLLWLITPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLM 60 Query: 61 MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEK 120 MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEK Sbjct: 61 MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEK 120 Query: 121 ISMQEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVTSELK 180 ISMQEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVTSELK Sbjct: 121 ISMQEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVTSELK 180 Query: 181 TAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLA 240 TAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLA Sbjct: 181 TAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLA 240 Query: 241 QSFYS 245 QSFYS Sbjct: 241 QSFYS 245
>TYPE3IMQPROT#Type III secretion system inner membrane Q protein family signature. Length = 86 Score = 67.1 bits (164), Expect = 1e-18 Identities = 22/78 (28%), Positives = 42/78 (53%) Query: 4 ESVMMMGTEAMKVALALAAPLLLVALVTGLIISILQAATQINEMTLSFIPKIIAVFIAII 63 + ++ G +A+ + L L+ +VA + GL++ + Q TQ+ E TL F K++ V + + Sbjct: 2 DDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLF 61 Query: 64 IAGPWMLNLLLDYVRTLF 81 + W +LL Y R + Sbjct: 62 LLSGWYGEVLLSYGRQVI 79
>TYPE3IMRPROT#Type III secretion system inner membrane R protein family signature. Length = 261 Score = 202 bits (516), Expect = 6e-67 Identities = 256/261 (98%), Positives = 259/261 (99%) Query: 1 MMQVTSDQWLSWLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 M+QVTS+QWLSWL+LYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA Sbjct: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 Query: 61 NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPGSHL 120 NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDP SHL Sbjct: 61 NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGSEPLNSNAFLALTKAGSLIF 180 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIG EPLNSNAFLALTKAGSLIF Sbjct: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC Sbjct: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 Query: 241 EHLFSEIFNLLADIISELPLI 261 EHLFSEIFNLLADIISELPLI Sbjct: 241 EHLFSEIFNLLADIISELPLI 261
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.3 bits (65), Expect = 0.045 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 15/62 (24%) Query: 320 AKYILTPVLWKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEILIDRG 379 A+Y + PVLW Y+ R+ K + G+ VY +R +DG+E RG Sbjct: 166 ARYQVGPVLWGYVVRFIK---SDGDKLTLPYVY------------SRSQRDGSEAWKWRG 210 Query: 380 WD 381 WD Sbjct: 211 WD 212
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 34.4 bits (79), Expect = 2e-04 Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 9/92 (9%) Query: 37 AQKLAADDDVDMLVILTACYFHDIVSLAKNHPQRQRSSILAAEETRRLLREEFAQFPA-- 94 +KLA + + D+ +ILT + +L + Q + EE R+ E F A Sbjct: 219 GEKLAEEVNADIFMILTDV---NGAALYYGTEKEQWLREVKVEELRKYYEE--GHFKAGS 273 Query: 95 --EKIEAVCHAIAAHSFSAQIAPLTTEAKIVQ 124 K+ A I A IA L + ++ Sbjct: 274 MGPKVLAAIRFIEWGGERAIIAHLEKAVEALE 305
>ECOLIPORIN#E.coli/Salmonella-type porin signature. Length = 383 Score = 408 bits (1051), Expect = e-145 Identities = 199/388 (51%), Positives = 249/388 (64%), Gaps = 41/388 (10%) Query: 1 MKRKVLAMLVPALLVAGAANAAEIYNKNGNKVELYGKMVGERILTDRENGEKGDNSQDTS 60 MKRKVLA+++PALL AGAA+AAEIYNK+GNK++LYGK+ G +D ++ + GD + Sbjct: 1 MKRKVLALVIPALLAAGAAHAAEIYNKDGNKLDLYGKVDGLHYFSD-DSSKDGD----QT 55 Query: 61 YARVGVKGETQINPELTGYGQFELDLEASNRHNPDQ---TRLAYAGLSYKDFGSFDYGRN 117 Y RVG KGETQIN +LTGYGQ+E +++A+ TRLA+AGL + D+GSFDYGRN Sbjct: 56 YMRVGFKGETQINDQLTGYGQWEYNVQANTTEGEGANSWTRLAFAGLKFGDYGSFDYGRN 115 Query: 118 VGVAYDAEAFTDMFVEWGGDSWAGTDLFMTNRTNGVATYRNTDFFGMVEGLNFALQYQGK 177 GV YD E +TDM E+GGDS+ D +MT R NGVATYRNTDFFG+V+GLNFALQYQGK Sbjct: 116 YGVLYDVEGWTDMLPEFGGDSYTYADNYMTGRANGVATYRNTDFFGLVDGLNFALQYQGK 175 Query: 178 NEGTGNY----------------KANGDGHGLSATYTID-GFSFAGAYANSDRTDWQSGD 220 NE NGDG G+S TY I GFS AY SDRT+ Q Sbjct: 176 NESQSADDVNIGTNNRNNGDDIRYDNGDGFGISTTYDIGMGFSAGAAYTTSDRTNEQVNA 235 Query: 221 GK----GERAEVWALSTKYDANNVYAAVMYGESHNM-------NSDDGDVVNKTQNFEAV 269 G G++A+ W KYDANN+Y A MY E+ NM DG V NKTQNFE Sbjct: 236 GGTIAGGDKADAWTAGLKYDANNIYLATMYSETRNMTPYGKTDKGYDGGVANKTQNFEVT 295 Query: 270 LQYQFDFGLRPSIGYSYSKALDVA----GYKDSDRLNYIEIGTWYYFNKNMNVYTAYQIN 325 QYQFDFGLRP++ + SK D+ D D + Y ++G YYFNKN + Y Y+IN Sbjct: 296 AQYQFDFGLRPAVSFLMSKGKDLTYNNVNGDDKDLVKYADVGATYYFNKNFSTYVDYKIN 355 Query: 326 LLDKSD-YVLAHGLNTDDQLAVGIVYQF 352 LLD D + G++TDD +A+G+VYQF Sbjct: 356 LLDDDDPFYKDAGISTDDIVALGMVYQF 383
>PF06580#Sensor histidine kinase Length = 349 Score = 33.7 bits (77), Expect = 0.001 Identities = 36/181 (19%), Positives = 63/181 (34%), Gaps = 37/181 (20%) Query: 290 ENILFLARADKNNVLVKLDSLS----------------LNKEVENLLDYL--EYLSDEKE 331 NI L D L SLS L E+ + YL + E Sbjct: 180 NNIRALILEDPTKAREMLTSLSELMRYSLRYSNARQVSLADELTVVDSYLQLASIQFEDR 239 Query: 332 ICFKVKCNQQIFADKI---LLQRMLSNLIVNAIRYSPEKSRIHITSFLDANGSLNIDIAS 388 + F+ + N I ++ L+Q ++ N I + I P+ +I + D NG++ +++ + Sbjct: 240 LQFENQINPAIMDVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKD-NGTVTLEVEN 298 Query: 389 PGTKINEPEKLFRRFWRGDNSRHSVGQGLGLSLVKA-IAELHGGSATYHYLSKHNVFRIT 447 G+ + K G GL V+ + L+G A K Sbjct: 299 TGSLALKNTKE--------------STGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAM 344 Query: 448 L 448 + Sbjct: 345 V 345
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 81.8 bits (202), Expect = 4e-20 Identities = 29/117 (24%), Positives = 59/117 (50%), Gaps = 1/117 (0%) Query: 2 KILLIEDNQRTQEWVTQGFSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 IL+ +D+ + + Q S AGY + S+ D L++ D+++P + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 ILQTLRTA-KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 117 +L ++ A PV+ ++A+++ ++ + GA DYL KPF +EL+ + L + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 51.2 bits (122), Expect = 2e-08 Identities = 22/70 (31%), Positives = 44/70 (62%) Query: 22 QQLRERLIQELNLTPQQLHEESNLIQAGLDSIRLMRWLHWFRKNGYRLTLRELYAAPTLA 81 + +R+++ + L TP+ + ++ +L+ GLDS+R+M + +R+ G +T EL PT+ Sbjct: 233 ENIRKQIAELLQETPEDITDQEDLLDRGLDSVRIMTLVEQWRREGAEVTFVELAERPTIE 292 Query: 82 AWNQLMLSRS 91 W +L+ +RS Sbjct: 293 EWQKLLTTRS 302
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 45.8 bits (108), Expect = 1e-06 Identities = 32/156 (20%), Positives = 55/156 (35%), Gaps = 19/156 (12%) Query: 1561 LVTGAFGGLGRLAVNWLREKGARRIALLAPRVDESWLRDVEGGQTRVCR------CDVGD 1614 +TGA G+G L +GA + A + L V R DV D Sbjct: 12 FITGAAQGIGEAVARTLASQGAH---IAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 1615 AGQLATVLDDLAAN-GGIAGAIHAAGVLADAPLQELDDHQLAAVFAVKAQAASQLLQTLR 1673 + + + + G I ++ AGVL + L D + A F+V + +++ Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128 Query: 1674 NH-----DGRYLILYSSAAAT----LGAPGQSAHAL 1700 + G + + S+ A + A S A Sbjct: 129 KYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAA 164
>INTIMIN#Intimin signature. Length = 939 Score = 74.7 bits (183), Expect = 2e-17 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 3/60 (5%) Query: 162 QQIASTSQLIGSLLAEDMNSEQAANIARGWASSQASGVMTDWLSRFGTARITLGVDEDFS 221 QQ AS + S +N + A + A G A +QAS + WL +GTA + L +F Sbjct: 168 QQAASLGSQLQS---RSLNGDYAKDTALGIAGNQASSQLQAWLQHYGTAEVNLQSGNNFD 224
>INTIMIN#Intimin signature. Length = 939 Score = 54.7 bits (131), Expect = 5e-10 Identities = 62/263 (23%), Positives = 91/263 (34%), Gaps = 20/263 (7%) Query: 175 IAVKAHVNDQFGNPVTHQPATFSAAPSSQMIISQNTVSTNTQGVAEVTITPERNGSYTVK 234 I A V G + P +F+ S ++S N+ +TN G A VT+ ++ G V Sbjct: 578 ITYTATVKKN-GVAQANVPVSFNIV-SGTAVLSANSANTNGSGKATVTLKSDKPGQVVVS 635 Query: 235 ASLANGASLEKQLEAI---DEKLTLTSSPLIGVNAPKGATLTATLT---SANGTPVEGQV 288 A A S I K ++T A T T PV Q Sbjct: 636 AKTAEMTSALNANAVIFVDQTKASITEIKADKTTAVANGQDAITYTVKVMKGDKPVSNQE 695 Query: 289 INFSVTLEGATLSGGKVRTNSSGQAPVVLTSNKVGTYTVTASFHNGVTIQTQTTVKVTGN 348 + F+ TL LS +T+++G A V LTS G V+A + V+ Sbjct: 696 VTFTTTL--GKLSNSTEKTDTNGYAKVTLTSTTPGKSLVSARVSDVAVDVKAPEVEFFTT 753 Query: 349 PSTAHVASFIADPSTITATNSDLSTLKATVEDGCGNL-IEGLTVYFALKSGSTTLTSLTA 407 + I T ++ G NL G + +S + + S Sbjct: 754 LTID------DGNIEIVGTGVKGKLPTVWLQYGQVNLKASGGNGKYTWRSANPAIAS--- 804 Query: 408 VTDQNGIATTSVKGAITGSVTVS 430 V +G T KG T SV S Sbjct: 805 VDASSGQVTLKEKGTTTISVISS 827 Score = 52.0 bits (124), Expect = 4e-09 Identities = 45/170 (26%), Positives = 64/170 (37%), Gaps = 7/170 (4%) Query: 271 TLTATLTSANGTPVEGQVINFSVTLEGATLSGGKVRTNSSGQAPVVLTSNKVGTYTVTAS 330 T TAT+ NG ++F++ A LS TN SG+A V L S+K G V+A Sbjct: 579 TYTATVKK-NGVAQANVPVSFNIVSGTAVLSANSANTNGSGKATVTLKSDKPGQVVVSAK 637 Query: 331 FHNGV-TIQTQTTVKVTGNPSTAHVASFIADPSTITATNSDLSTLKATVEDGCGNLIEGL 389 + + V + A + AD +T A D T V G + Sbjct: 638 TAEMTSALNANAVIFVDQ--TKASITEIKADKTTAVANGQDAITYTVKVMKG-DKPVSNQ 694 Query: 390 TVYFALKSGSTTLTSLTAVTDQNGIATTSVKGAITGSVTVSTVTSAGGMQ 439 V F G + + T TD NG A ++ G VS S + Sbjct: 695 EVTFTTTLGKLSNS--TEKTDTNGYAKVTLTSTTPGKSLVSARVSDVAVD 742 Score = 52.0 bits (124), Expect = 5e-09 Identities = 51/233 (21%), Positives = 89/233 (38%), Gaps = 16/233 (6%) Query: 13 AVTDADGKAKVTLKGTKAGAHTVTASMVGGKS--EQLVVNFTADTLTAQVNLNVTEDNFI 70 A T+ GKA VTLK K G V+A S V F T + + + + Sbjct: 612 ANTNGSGKATVTLKSDKPGQVVVSAKTAEMTSALNANAVIFVDQTKASITEIKADKTTAV 671 Query: 71 ANNIGMTRLQATVTDGNGNPVEGIKVNFRGTSVTLSSTSVETDDQVFAEILVTSTEVGLK 130 AN V PV +V F T LS+++ +TD +A++ +TST G Sbjct: 672 ANGQDAITYTVKVMK-GDKPVSNQEVTFTTTLGKLSNSTEKTDTNGYAKVTLTSTTPGKS 730 Query: 131 TVSASLADKPTEVISRLLN----AKVDVNSATI----TSQEIPEGQVMVAQDIAVKAHVN 182 VSA ++D +V + + +D + I ++P + Q + N Sbjct: 731 LVSARVSDVAVDVKAPEVEFFTTLTIDDGNIEIVGTGVKGKLPTVWLQYGQVNLKASGGN 790 Query: 183 DQFGNPVTHQPATFSAAPSSQMIISQNTVSTNTQGVAEVTITPERNGSYTVKA 235 ++ + A S Q+ + + +T + V + + +YT+ Sbjct: 791 GKYTWRSANPAIASVDASSGQVTLKEKGTTTIS-----VISSDNQTATYTIAT 838 Score = 40.1 bits (93), Expect = 2e-05 Identities = 35/213 (16%), Positives = 63/213 (29%), Gaps = 18/213 (8%) Query: 4 NFTLSDGDKAVTDADGKAKVTLKGTKAGAHTVTASMVGGKSE--QLVVNFTADTLTAQVN 61 TD +G AKVTL T G V+A + + V F N Sbjct: 701 TLGKLSNSTEKTDTNGYAKVTLTSTTPGKSLVSARVSDVAVDVKAPEVEFFTTLTIDDGN 760 Query: 62 LNVTEDNFIANNIGMTRLQATVTDGNGN-PVEGIKVNFRGTSVTLSSTSVETDDQVFAEI 120 + + + + + G N G + S + SV+ Sbjct: 761 IEI-----VGTGVKGKLPTVWLQYGQVNLKASGGNGKYTWRSANPAIASVDASSGQ---- 811 Query: 121 LVTSTEVGLKTVSASLADKPTEVISRLLNAKVDVNSATITSQEIPEGQVMVAQDIAVKAH 180 VT E G T+S +D T + + + ++ + V ++ Sbjct: 812 -VTLKEKGTTTISVISSDNQT--ATYTIATPNSLIVPNMSKRVTYNDAVNTCKNFGG--- 865 Query: 181 VNDQFGNPVTHQPATFSAAPSSQMIISQNTVST 213 N + + + AA + S T+ + Sbjct: 866 KLPSSQNELENVFKAWGAANKYEYYKSSQTIIS 898
>INTIMIN#Intimin signature. Length = 939 Score = 27.7 bits (61), Expect = 0.022 Identities = 22/129 (17%), Positives = 46/129 (35%), Gaps = 6/129 (4%) Query: 11 KISAIDYSQNINGDYKATVTGGGEGIATLIPVLNGVHQAGLSTTIEFISAETRPMTGTVS 70 K+S + NG K T+T G + + ++ V + +EF G + Sbjct: 704 KLSNSTEKTDTNGYAKVTLTSTTPGKSLVSARVSDVAVDVKAPEVEFF-TTLTIDDGNIE 762 Query: 71 VNSANLPTASFPSQGFTGAYYQLNNDNFAPGKTAADYSFSSSASWVGVDATGKVTFKNDG 130 + + P+ L + G + ++ A ++G+VT K G Sbjct: 763 IVGTGV-KGKLPTVWLQYGQVNL---KASGGNGKYTWRSANPAIASVDASSGQVTLKEKG 818 Query: 131 DSNTVIITA 139 + T+ + + Sbjct: 819 -TTTISVIS 826
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 33.3 bits (76), Expect = 0.002 Identities = 39/259 (15%), Positives = 96/259 (37%), Gaps = 18/259 (6%) Query: 79 LGGVIFGHFGDRLGRKRMLMLTVWMMGIATALIGILPSFSTIGWWAPILLVTLRAIQGFA 138 +G ++G D+LG KR+L+ + + + + + SF ++ I+ ++ A Sbjct: 64 IGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSL----LIMARFIQGAGAAA 119 Query: 139 VGGEWGGAALLSVESAPKNKK-AFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWG 197 + + K S V +G GVG + + I Sbjct: 120 FPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYI------------H 167 Query: 198 WRIPFLFSIVLVLGALWVRNGMEESAEFEQQQHNQAAAKKRIPVIEALLRHPGAFLKIIA 257 W L ++ ++ ++ +++ + + + ++ +L + + Sbjct: 168 WSYLLLIPMITIITVPFLMKLLKKEVRIKGHFDIKGIILMSVGIVFFMLFTTSYSISFLI 227 Query: 258 LRLCELLTMYIVTAFALNYSTQNMGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRR 317 + + L +++ + + GL + + IG+L GG+ T+ F + + Sbjct: 228 VSVLSFL-IFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDV 286 Query: 318 VYITGALIGTLSAFPFFMA 336 ++ A IG++ FP M+ Sbjct: 287 HQLSTAEIGSVIIFPGTMS 305
>PF05272#Virulence-associated E family protein Length = 892 Score = 32.7 bits (74), Expect = 0.002 Identities = 12/22 (54%), Positives = 13/22 (59%) Query: 32 VTVLLGPNGCGKSTLLRALAGL 53 VL G G GKSTL+ L GL Sbjct: 598 SVVLEGTGGIGKSTLINTLVGL 619
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 45.9 bits (109), Expect = 9e-08 Identities = 29/172 (16%), Positives = 65/172 (37%), Gaps = 29/172 (16%) Query: 1 MNILLFGKTGQVGWELQRALAPLGN-LIALDVHSTDY--------------------CGD 39 M L+ G G +G+ + + L G+ ++ +D + Y D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 40 FSNPEGVAETVKKIRPDVIVNAAAHTAVDKAESEPEF---AQLLNATSVEAIAKAANEVG 96 ++ EG+ + + + + AV + P + L ++ + + Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNK-IQ 119 Query: 97 AWVIHYSTDYVFPGTGEIPWQETDATA-PLNVYGETKLAGEKALQKHCAKHI 147 +++ S+ V+ ++P+ D+ P+++Y TK A E L H H+ Sbjct: 120 H-LLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANE--LMAHTYSHL 168
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 188 bits (479), Expect = 3e-59 Identities = 90/363 (24%), Positives = 149/363 (41%), Gaps = 54/363 (14%) Query: 1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLT--YAGNL-ESLAEISDSERYSFEHA 57 MK LVTG AGFIG V + ++ VV +D L Y +L ++ E+ + F Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAG-HQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKI 59 Query: 58 DICDAEAMARIFAQHQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSG 117 D+ D E M +FA + V V S+ P A+ ++N+ G +LE R Sbjct: 60 DLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCR----- 114 Query: 118 LDDEKKKNFRFHHI---STDEVYGDLPHPDEVNSNETLQLFTETTAYAPSSPYSASKASS 174 + + H+ S+ VYG N + T+ + P S Y+A+K ++ Sbjct: 115 -------HNKIQHLLYASSSSVYG---------LNRKMPFSTDDSVDHPVSLYAATKKAN 158 Query: 175 DHLVRAWKRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKALPIYGKGDQIRDWL 234 + + + YGLP YGP+ P+ + LEGK++ +Y G RD+ Sbjct: 159 ELMAHTYSHLYGLPATGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFT 218 Query: 235 YVED-------------HARALYTVVTEGKA-----GETYNIGGHNEKKNIDVVFTICDL 276 Y++D HA +TV T A YNIG + + +D + + D Sbjct: 219 YIDDIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDA 278 Query: 277 LDEIVPKEKSYREQITYVADRPGHDRRYAIDADKISRELGWKPQETFESGIRKTVEWYLA 336 L + +K+ +PG + D + +G+ P+ T + G++ V WY Sbjct: 279 LG--IEAKKNMLPL------QPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRD 330 Query: 337 NTN 339 Sbjct: 331 FYK 333
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 49.1 bits (117), Expect = 2e-08 Identities = 48/369 (13%), Positives = 106/369 (28%), Gaps = 87/369 (23%) Query: 4 SYKSRWVIVIVVVIAAIAAFWFWQGRNDSQSAAPG-----ATKQAQQSPAGGR------- 51 S + R V ++ IA G+ + + A G + + Sbjct: 54 SRRPRLVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVK 113 Query: 52 --RGMRAG-PLA---PVQAATAVEQAVPRYLTGLGTITAANTVTVRSRVDG--QLMALHF 103 +R G L + A + L T ++ ++ +L Sbjct: 114 EGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDE 173 Query: 104 QEGQQVKAGDLLAEI------------DPSQFKVALAQAQGQLA-------KDKATLANA 144 Q V ++L Q ++ L + + + + + Sbjct: 174 PYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVE 233 Query: 145 RRDLARYQQLAKTNLVSRQELDAQQALVSETEGTIKADEASVA----------------- 187 + L + L +++ + Q+ E ++ ++ + Sbjct: 234 KSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVT 293 Query: 188 --------------------------SAQLQLDWSRITAPVDGRV-GLKQVDVGNQISSG 220 + + S I APV +V LK G +++ Sbjct: 294 QLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTA 353 Query: 221 DTTGIVVITQTHPIDLVFTLPESDIATVVQAQKAGKPLVVEAWDRTNSKKL-SEGTLLSL 279 +T +V++ + +++ + DI + Q A + VEA+ T L + ++L Sbjct: 354 ETL-MVIVPEDDTLEVTALVQNKDIGFINVGQNA--IIKVEAFPYTRYGYLVGKVKNINL 410 Query: 280 DNQIDATTG 288 D D G Sbjct: 411 DAIEDQRLG 419
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 919 bits (2376), Expect = 0.0 Identities = 300/1036 (28%), Positives = 513/1036 (49%), Gaps = 29/1036 (2%) Query: 13 SRLFIMRPVATTLLMVAILLAGIIGYRALPVSALPEVDYPTIQVVTLYPGASPDVMTSAV 72 + FI RP+ +L + +++AG + LPV+ P + P + V YPGA + V Sbjct: 2 ANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTV 61 Query: 73 TAPLERQFGQMSGLKQMSSQS-SGGASVITLQFQLTLPLDVAEQEVQAAINAATNLLPSD 131 T +E+ + L MSS S S G+ ITL FQ D+A+ +VQ + AT LLP + Sbjct: 62 TQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQE 121 Query: 132 LPNPPVYSKVNPADPPIMTLAVTSTAMPMTQVE--DMVETRVAQKISQISGVGLVTLSGG 189 + + S + +M S TQ + D V + V +S+++GVG V L G Sbjct: 122 VQQQGI-SVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 190 QRPAVRVKLNAQAIAALGLTSESVRTAITGANVNSAKGSLDGP------SRAVTLSANDQ 243 Q A+R+ L+A + LT V + N A G L G ++ A + Sbjct: 181 QY-AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 244 MQSAEEYRQLII-AYQNGAPIRLGDVATVEQGAENSWLGAWANKEQAIVMNVQRQPGANI 302 ++ EE+ ++ + +G+ +RL DVA VE G EN + A N + A + ++ GAN Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 303 ISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVDDTQFELMMAIALVVMIIYLFL 362 + TA +I+ L +L P+ +KV D T ++ S+ + L AI LV +++YLFL Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 363 RNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIATGFVVDDAIVVIENISRY 422 +N+ AT+IP +AVP+ L+GTFA++ +SIN LT+ + +A G +VDDAIVV+EN+ R Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 423 I-EKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGDIVGRLFREFAITLAVAIL 481 + E P A K +I ++ + L AV IP+ F G G ++R+F+IT+ A+ Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 482 ISAVVSLTLTPMMCARML---SQESLRKQNRFSRASEKMFDRIIAAYGRGLAKVLNHPWL 538 +S +V+L LTP +CA +L S E + F FD + Y + K+L Sbjct: 480 LSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539 Query: 539 TLSVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFANMAQRQRQVADVILQ 598 L + + V+L++ +P F P +D G+ +Q P ++ + QV D L+ Sbjct: 540 YLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLK 599 Query: 599 DPA--VQSLTSFVGVDGTNPSLNSARLQINLKPLDERDDR---VQKVIARLQTAVDKVPG 653 + V+S+ + G + + N+ ++LKP +ER+ + VI R + + K+ Sbjct: 600 NEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIR- 658 Query: 654 VDLFLQPTQDLTIDTQVSRTQYQFTLQ---ATSLDALSTWVPQLMEKLQQLP-QLSDVSS 709 D F+ P I + T + F L DAL+ QL+ Q P L V Sbjct: 659 -DGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRP 717 Query: 710 DWQDKGLVAYVNVDRDSASRLGISMADVDNALYNAFGQRLISTIYTQANQYRVVLEHNTE 769 + + + VD++ A LG+S++D++ + A G ++ + ++ ++ + + Sbjct: 718 NGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAK 777 Query: 770 NTPGLAALDTIRLTSSDGGVVPLSSIAKIEQRFAPLSINHLDQFPVTTISFNVPDNYSLG 829 +D + + S++G +VP S+ + + + P I S G Sbjct: 778 FRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSG 837 Query: 830 DAVQAIMDTEKTLNLPVDITTQFQGSTLAFQSALGSTVWLIVAAVVAMYIVLGILYESFI 889 DA A+M+ + LP I + G + + + L+ + V +++ L LYES+ Sbjct: 838 DA-MALMENLAS-KLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWS 895 Query: 890 HPITILSTLPTAGVGALLALMIAGSELDVIAIIGIILLIGIVKKNAIMMIDFALAAEREQ 949 P++++ +P VG LLA + + DV ++G++ IG+ KNAI++++FA ++ Sbjct: 896 IPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKE 955 Query: 950 GMSPREAIYQACLLRFRPILMTTLAALLGALPLMLSTGVGAELRRPLGIGMVGGLIVSQV 1009 G EA A +R RPILMT+LA +LG LPL +S G G+ + +GIG++GG++ + + Sbjct: 956 GKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATL 1015 Query: 1010 LTLFTTPVIYLLFDRL 1025 L +F PV +++ R Sbjct: 1016 LAIFFVPVFFVVIRRC 1031
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 916 bits (2368), Expect = 0.0 Identities = 288/1035 (27%), Positives = 504/1035 (48%), Gaps = 36/1035 (3%) Query: 6 LFIYRPVATILLSVAITLCGILGFRMLPVAPLPQVDFPVIMVSASLPGASPETMASSVAT 65 FI RP+ +L++ + + G L LPVA P + P + VSA+ PGA +T+ +V Sbjct: 4 FFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVTQ 63 Query: 66 PLERSLGRIAGVSEMTSSS-SLGSTRIILQFDFDRDINGAARDVQAAINAAQSLLPSGMP 124 +E+++ I + M+S+S S GS I L F D + A VQ + A LLP + Sbjct: 64 VIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEVQ 123 Query: 125 SRPTYRKANPSDAPIMILTLTSDT--YSQGELYDFASTQLAPTISQIDGVGDVDVGGSSL 182 + S + +M+ SD +Q ++ D+ ++ + T+S+++GVGDV + G+ Sbjct: 124 -QQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGAQY 182 Query: 183 PAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQG------ALEDGTHRWQIQTNDELK 236 A+R+ L+ L ++ DV + N + G AL I K Sbjct: 183 -AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFK 241 Query: 237 TAAEYQPLIIHYN-NGGAVRLGDVATVTDSVQDVRNAGMTNAKPAILLMIRKLPEANIIQ 295 E+ + + N +G VRL DVA V ++ N KPA L I+ AN + Sbjct: 242 NPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALD 301 Query: 296 TVDSIRARLPELQSTIPAAIDLQIAQDRSPTIRASLEEVEQTLVISVALVILVVFLFLRS 355 T +I+A+L ELQ P + + D +P ++ S+ EV +TL ++ LV LV++LFL++ Sbjct: 302 TAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQN 361 Query: 356 GRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDAIVVLENIARHL- 414 RAT+IP +AVPV L+GTFA + G+S+N L++ + +A G +VDDAIVV+EN+ R + Sbjct: 362 MRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMM 421 Query: 415 EAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLLREFAVTLSVAIGIS 474 E + P +A + ++ ++ +++ L AVF+P+ GG G + R+F++T+ A+ +S Sbjct: 422 EDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALS 481 Query: 475 LLVSLTLTPMMCGWMLKASKPREQKRLRGFG----RMLVALQQGYGKSLKWVLNHTRLVG 530 +LV+L LTP +C +LK + GF Y S+ +L T Sbjct: 482 VLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYL 541 Query: 531 VVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQ----AMRGKLQDFMKII 586 ++ +A + L++ +P +F PE+D GV + IQ + + + ++K Sbjct: 542 LIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKNE 601 Query: 587 RD-DPAVDNVTGFT-GGSRVNSGMMFITLKPRGERS---ETAQQIIDRLRKKLAKEPGAN 641 + +V V GF+ G N+GM F++LKP ER+ +A+ +I R + +L K Sbjct: 602 KANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDGF 661 Query: 642 LFLMAVQDIRVGGRQANASYQYTLLSDDLAALREWEPKIRKKLATL-----PELADVNSD 696 + + I G ++ L D + + R +L + L V + Sbjct: 662 VIPFNMPAIVELGTATGFDFE---LIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPN 718 Query: 697 QEDNGAEMNLIYDRDTMARLGIDVQAANSLLNNAFGQRQISTIYQPMNQYKVVMEVDPRY 756 ++ A+ L D++ LG+ + N ++ A G ++ K+ ++ D ++ Sbjct: 719 GLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKF 778 Query: 757 TQDISALEKMFVINNEGKAIPLSYFAKWQPANAPLSVNHQGLSAASTISFNLPTGKSLSD 816 ++K++V + G+ +P S F + + I G S D Sbjct: 779 RMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGD 838 Query: 817 ASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIATVYIVLGILYESYVH 876 A A ++ ++L P+ + + G + + + N L+ + V++ L LYES+ Sbjct: 839 AMALMENLASKL--PAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSI 896 Query: 877 PLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAIMMVDFALEAQRHGN 936 P++++ +P VG LLA LFN + ++G++ IG+ KNAI++V+FA + Sbjct: 897 PVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEG 956 Query: 937 LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQPLGITIVGGLVMSQLL 996 EA A +R RPI+MT+LA + G LPL +S G GS + +GI ++GG+V + LL Sbjct: 957 KGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLL 1016 Query: 997 TLYTTPVVYLFFDRL 1011 ++ PV ++ R Sbjct: 1017 AIFFVPVFFVVIRRC 1031 Score = 81.0 bits (200), Expect = 2e-17 Identities = 76/448 (16%), Positives = 161/448 (35%), Gaps = 26/448 (5%) Query: 592 VDNVTGFTGGS-RVNSGMMFITLKPRGERSETAQQIIDRLRKKLAKEPGANLFLMAVQDI 650 +DN+ + S S + +T + + Q+ ++L+ P + Q I Sbjct: 72 IDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQE----VQQQGI 127 Query: 651 RVGGRQANASYQYTLLSDDLAALREW-----EPKIRKKLATLPELADVNSDQEDNGAE-- 703 V ++ +SD+ ++ ++ L+ L + DV GA+ Sbjct: 128 SVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQL----FGAQYA 183 Query: 704 MNLIYDRDTMARLGID----VQAANSLLNNAFGQRQISTIYQPMNQYKVVMEVDPRYTQD 759 M + D D + + + + + + T P Q + R+ Sbjct: 184 MRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFKNP 243 Query: 760 ISALEKMFVINNEGKAIPLSYFAK--WQPANAPLSVNHQGLSAASTISFNLPTGKSLSDA 817 + +N++G + L A+ N + G AA +L D Sbjct: 244 EEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL-DT 302 Query: 818 SAAIDRAMTQL--GVPSTVRGSFA-GTAQVFQETMNSQVILIIAAIATVYIVLGILYESY 874 + AI + +L P ++ + T Q +++ V + AI V++V+ + ++ Sbjct: 303 AKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNM 362 Query: 875 VHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAIMMVDFALEAQRH 934 L +P +G L F + + + G++L IG++ +AI++V+ Sbjct: 363 RATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMME 422 Query: 935 GNLTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQPLGITIVGGLVMSQ 994 L P+EA ++ ++ + +P+ GG + + ITIV + +S Sbjct: 423 DKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSV 482 Query: 995 LLTLYTTPVVYLFFDRLRMRFSRKPKQA 1022 L+ L TP + + + K Sbjct: 483 LVALILTPALCATLLKPVSAEHHENKGG 510
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 123 bits (310), Expect = 8e-33 Identities = 97/435 (22%), Positives = 190/435 (43%), Gaps = 25/435 (5%) Query: 20 FMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADKVGVRNIFF 79 F L+ ++N +LP +A + P + V +++LT ++ G L+D++G++ + Sbjct: 24 FFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLL 83 Query: 80 TAIVLFTLGSLFCALSGTLNELL-LARALQGVGGAMMVPVGRLTVMKIVPREQYMAAMTF 138 I++ GS+ + + LL +AR +QG G A + + V + +P+E A Sbjct: 84 FGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGL 143 Query: 139 VTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLM-LMPNYTMQTRRFDL 197 + +G +GPA+GG++ Y HW +L+ IP+ I + LM L+ FD+ Sbjct: 144 IGSIVAMGEGVGPAIGGMIAHY--IHWSYLLLIPMITIITVPFLMKLLKKEVRIKGHFDI 201 Query: 198 SGFLLLAVGMAVLTLALDGSKGTGLSPLAIAGLVAVGVVALVLYLLHAQNNNRALFSLKL 257 G +L++VG+ L + + V V++ ++++ H + L Sbjct: 202 KGIILMSVGIVFFMLF---------TTSYSISFLIVSVLSFLIFVKHIRKVTDPFVDPGL 252 Query: 258 FRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAG-LMMIPMVLGSMGMKRI 316 + F +G+ M P ++ S G +++ P + + I Sbjct: 253 GKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYI 312 Query: 317 VVQVVNRFGYRRVLVATTLGLSLVTLLFMTTALL----GWYYVLPFVLFLQGMVNSTRFS 372 +V+R G VL +G++ +++ F+T + L W+ + V L G+ S + Sbjct: 313 GGILVDRRGPLYVL---NIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGL--SFTKT 367 Query: 373 SMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGSQHVSVDSGTTQTVF 432 ++T+ L A +G SLL+ LS G+ I G LL + + Q+ + Sbjct: 368 VISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSIPLLDQRLLPMEVDQSTY 427 Query: 433 MYT--WLSMASIIAL 445 +Y+ L + II + Sbjct: 428 LYSNLLLLFSGIIVI 442
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 34.0 bits (78), Expect = 0.001 Identities = 28/95 (29%), Positives = 36/95 (37%), Gaps = 20/95 (21%) Query: 164 RQTSWLIVALSTLLAALATF------PLARGLLAPVKRLVDGTHKLAAGDFTTRVAPTSE 217 RQ + L+ A L AL P L+A V+ V H LA + P S Sbjct: 75 RQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSLAD---AMKCFPGSF 131 Query: 218 DEL-----------GRLAEDFNQLASTLEKNQQMR 241 + L G L N+LA E+ QQMR Sbjct: 132 ERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMR 166
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 75.6 bits (186), Expect = 6e-18 Identities = 28/136 (20%), Positives = 65/136 (47%), Gaps = 1/136 (0%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGL 70 IL+ +D+ + +L L A Y + S+ + ++ DL++ D+++P + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 71 TLCREIR-RFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 L I+ D+P+++++A+ + + E GA DY+ KP+ E++ + L K Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 130 PQRELQQQDAESPLII 145 + + D++ + + Sbjct: 124 RRPSKLEDDSQDGMPL 139
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 31.9 bits (72), Expect = 0.003 Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 2/92 (2%) Query: 156 AQGCENKNVIIIGAGT-IGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTFNSRE 214 A+G E K I GA IG + + GA + A+D + EKL S + ++ Sbjct: 3 AKGIEGKIAFITGAAQGIGEAVARTLASQGAH-IAAVDYNPEKLEKVVSSLKAEARHAEA 61 Query: 215 MSAPQIQGVLRELRFNQLILETAGVPQTVELA 246 A + ++ E + V +A Sbjct: 62 FPADVRDSAAIDEITARIEREMGPIDILVNVA 93
>TYPE3OMGPROT#Type III secretion system outer membrane G protein family signature. Length = 607 Score = 27.9 bits (62), Expect = 0.007 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%) Query: 6 KMLLGALLLVTSAAWAAPATAGSTNTSGISKYE-LSSFIADF 46 ++L G LLL++S +WA ++K E L + DF Sbjct: 11 RVLTGTLLLLSSYSWAQELDWLPIPYVYVAKGESLRDLLTDF 52
>BINARYTOXINB#Binary toxin B family signature. Length = 764 Score = 28.5 bits (63), Expect = 0.041 Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 8/79 (10%) Query: 93 NITLSNNQ---TSFTSGYSVTVTPAASNAKVNVSAGGGGSVMINGVATLSSA-----SSS 144 NI LS N+ T T + T++ S ++ + S G + + + + S+S Sbjct: 297 NIILSKNEDQSTQNTDSQTRTISKNTSTSRTHTSEVHGNAEVHASFFDIGGSVSAGFSNS 356 Query: 145 TRGSAAVQFLLCLLGGKSW 163 + A+ L L G ++W Sbjct: 357 NSSTVAIDHSLSLAGERTW 375
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 725 bits (1874), Expect = 0.0 Identities = 244/843 (28%), Positives = 391/843 (46%), Gaps = 35/843 (4%) Query: 2 LRMTPLASAI---VALLIGIEAYAAEETFDTHFMIGGMKDQQVANIRL--DDNQPLPGQY 56 R+ + A +AE F+ F+ Q VA++ + + PG Y Sbjct: 21 HRLAGFFVRLFVACAFAAQAPLSSAELYFNPRFLADD--PQAVADLSRFENGQELPPGTY 78 Query: 57 DIDIYVNKQWRGKYEIIVKDNPQET----CLSREMIKRLGINTD-----NFASGKQCLTF 107 +DIY+N + ++ E CL+R + +G+NT N + C+ Sbjct: 79 RVDIYLNNGYMATRDVTFNTGDSEQGIVPCLTRAQLASMGLNTASVSGMNLLADDACVPL 138 Query: 108 KQLIQGGSYTWDIGVFRLDFSVPQAWVEELEIGYVPPENWERGINAFYTSYYMSQYYSDY 167 +I + D+G RL+ ++PQA++ GY+PPE W+ GINA +Y S Sbjct: 139 TSMIHDATAQLDVGQQRLNLTIPQAFMSNRARGYIPPELWDPGINAGLLNYNFSGNSVQN 198 Query: 168 KASGNSKSTYVRFNSGLNLLGWQLHSDASFSKTNNNPGV-----WKSNTLYLERGFAQLL 222 + GNS Y+ SGLN+ W+L + ++S +++ W+ +LER L Sbjct: 199 RIGGNSHYAYLNLQSGLNIGAWRLRDNTTWSYNSSDSSSGSKNKWQHINTWLERDIIPLR 258 Query: 223 GTLRVGDMYTSSDIFDSVRFSGVRLFRDMQMLPNSKQNFTPRVQGIAQSNALVTIEQNGF 282 L +GD YT DIFD + F G +L D MLP+S++ F P + GIA+ A VTI+QNG+ Sbjct: 259 SRLTLGDGYTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQVTIKQNGY 318 Query: 283 VVYQKEVPPGPFAITDLQLAGGGADLDVSVKEADGSVTTYLVPYAAVPNMLQPGVSKYDF 342 +Y VPPGPF I D+ AG DL V++KEADGS + VPY++VP + + G ++Y Sbjct: 319 DIYNSTVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQREGHTRYSI 378 Query: 343 AAGRSHIEGASKQSD-FVQAGYQYGFNNLLTLYGGSMVANNYYAFTLGTGWNT-RFGAIS 400 AG A ++ F Q+ +G T+YGG+ +A+ Y AF G G N GA+S Sbjct: 379 TAGEYRSGNAQQEKPRFFQSTLLHGLPAGWTIYGGTQLADRYRAFNFGIGKNMGALGALS 438 Query: 401 VDATKSHSKQDNGDVFDGQSYQIAYNKFVSQTSTRFGLAAWRYSSRDYRTFNDHVWANNK 460 VD T+++S + DGQS + YNK ++++ T L +RYS+ Y F D ++ Sbjct: 439 VDMTQANSTLPDDSQHDGQSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFADTTYSRMN 498 Query: 461 DNYRRDENDIYDI----ADYYQNDFGRKNSFSANMSQSLPEGWGSVSLSTLWRDYWGRSG 516 ++ + + DYY + ++ ++Q L ++ LS + YWG S Sbjct: 499 GYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGR-TSTLYLSGSHQTYWGTSN 557 Query: 517 SSKDYQLSYSNNLRRISYTLAASHAYDENHHE-EKRFNIFISIPFD--WGDDVTTPRRQI 573 + +Q + I++TL+ S + ++ + ++IPF D + R Sbjct: 558 VDEQFQAGLNTAFEDINWTLSYSLTKNAWQKGRDQMLALNVNIPFSHWLRSDSKSQWRHA 617 Query: 574 YMSNSTTFDDQGVASNNTGLSGTVGSRDQFNYGVNLSYQYQGN---ETTAGANLTWNAPV 630 S S + D G +N G+ GT+ + +Y V Y G+ +T A L + Sbjct: 618 SASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGDGNSGSTGYATLNYRGGY 677 Query: 631 ATVNGSYSQSSAYRQAGASVSGGIVAWSGGVNLANRLSETFAVMNAPGIKDAYVNGQKYR 690 N YS S +Q VSGG++A + GV L L++T ++ APG KDA V Q Sbjct: 678 GNANIGYSHSDDIKQLYYGVSGGVLAHANGVTLGQPLNDTVVLVKAPGAKDAKVENQTGV 737 Query: 691 TTNRNGVVVYDGMTPYRENYLMLDVSQSDSEAELRGNRKIAAPYRGAVVLVNFDTDQRKP 750 T+ G V T YREN + LD + +L P RGA+V F + Sbjct: 738 RTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVPTRGAIVRAEFKA-RVGI 796 Query: 751 WFIKALRADGQPLTFGYEVNDIHGHNIGVVGQGSQLFIRTNEVPPSVNVAIDKQQGLSCT 810 + L + +PL FG V + G+V Q+++ + V V +++ C Sbjct: 797 KLLMTLTHNNKPLPFGAMVTSESSQSSGIVADNGQVYLSGMPLAGKVQVKWGEEENAHCV 856 Query: 811 ITF 813 + Sbjct: 857 ANY 859
>PF09025#YopR Core Length = 143 Score = 30.4 bits (68), Expect = 0.011 Identities = 28/102 (27%), Positives = 41/102 (40%), Gaps = 6/102 (5%) Query: 375 WQRSEQENSPAATRRLFSFQAGALAGGQIVSQAAKRSADGELLLATRNRLSSVVPLSPDA 434 ++++ PAA RRL + GAL + A L + L + +PL Sbjct: 32 FEQALGGEPPAAGRRLAGLENGALGERLLQRFAQPLQGLEADRLELKAMLRAELPLGRQQ 91 Query: 435 ----WQMLSAPLRQPGIVALREYLRQRPPACIRPLN-QVDNL 471 Q+L A PG L + R+ I PLN +DNL Sbjct: 92 QTFLLQLLGAVEHAPGGEYLAQLARRELQVLI-PLNGMLDNL 132
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 71.4 bits (175), Expect = 1e-16 Identities = 41/177 (23%), Positives = 77/177 (43%), Gaps = 12/177 (6%) Query: 2 IKVLIVDDEPLARENLRVFLQEQSDIEIVGECSNAVEGIGAVHKLRPDVLFLDIQMPRIS 61 +L+ DD+ R L L ++ ++ SNA + D++ D+ MP + Sbjct: 4 ATILVADDDAAIRTVLNQAL-SRAGYDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 62 GLEMVGMLDPEHRPYI--VFLTAFD--EYAIKAFEEHAFDYLLKPIDEARLEKTLARLRQ 117 +++ + + RP + + ++A + AIKA E+ A+DYL KP D L + R Sbjct: 62 AFDLLPRIK-KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 118 ERSKQDVSLLPENQQALKFIPCTGHSRIYLLQMKDVAFVSSRMSGVYVT--SHEGKE 172 E ++ L ++Q + + G S + +A + + +T S GKE Sbjct: 121 EPKRRPSKLEDDSQDGMPLV---GRSAAMQEIYRVLARLMQTDLTLMITGESGTGKE 174
>PF06580#Sensor histidine kinase Length = 349 Score = 220 bits (562), Expect = 4e-69 Identities = 63/216 (29%), Positives = 115/216 (53%), Gaps = 3/216 (1%) Query: 343 LGEGIAQLLSAQILAGQYERQKAMLTQSEIKLLHAQVNPHFLFNALNTIKAVIRRDSEQA 402 L G + + + +M ++++ L AQ+NPHF+FNALN I+A+I D +A Sbjct: 134 LYFGWHFFKNYKQAEIDQWKMASMAQEAQLMALKAQINPHFMFNALNNIRALILEDPTKA 193 Query: 403 SQLVQYLSTFFRKNLKR-PSEFVTLADEIEHVNAYLQIEKARFQSRLQVNIAIPQELSQQ 461 +++ LS R +L+ + V+LADE+ V++YLQ+ +F+ RLQ I + Sbjct: 194 REMLTSLSELMRYSLRYSNARQVSLADELTVVDSYLQLASIQFEDRLQFENQINPAIMDV 253 Query: 462 QLPAFTLQPIVENAIKHGTSQLLDTGRVAISARREGQHLMLEIEDNAGL-YQPVTNASGL 520 Q+P +Q +VEN IKHG +QL G++ + ++ + LE+E+ L + ++G Sbjct: 254 QVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKESTGT 313 Query: 521 GMNLVDKRLRERFGDDYGISVACEPDSYTRITLRLP 556 G+ V +RL+ +G + I ++ + + +P Sbjct: 314 GLQNVRERLQMLYGTEAQIKLSEKQGKVN-AMVLIP 348
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 43.6 bits (103), Expect = 5e-07 Identities = 42/195 (21%), Positives = 76/195 (38%), Gaps = 18/195 (9%) Query: 1 MPKFRVSLFSLALMLAVPFAPQAVAKTAAATTASQPEIASGSAMI-VDLNTNKVIYSNHP 59 M R+ + SL + +P A A + S+ +++ MI +DL + + + + Sbjct: 1 MRYIRLCIISL--LATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRA 58 Query: 60 DLVRPIASISKLMTAMVVLDARLPLDEKLKVDISQTPEMKGVYSRV---RLNSEISRKDM 116 D P+ S K++ VL DE+L+ I + YS V L ++ ++ Sbjct: 59 DERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGEL 118 Query: 117 LLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNNTRFV--EPTGLS-----V 169 A+ S+N +AA+L GG + A + +G N TR E Sbjct: 119 CAAAITMSDN-SAANLLLATVGG----PAGLTAFLRQIGDNVTRLDRWETELNEALPGDA 173 Query: 170 HNVSTARDLTKLLIA 184 + +T + L Sbjct: 174 RDTTTPASMAATLRK 188
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 28.3 bits (63), Expect = 0.019 Identities = 5/33 (15%), Positives = 16/33 (48%), Gaps = 2/33 (6%) Query: 152 WLHNLDQHLKHW-VWLILVVVL-VVGVRWWLKR 182 L + ++ + W++L ++ + R L++ Sbjct: 215 VLMGMSDAVRTFGPWMLLALLAGFMAFRVMLRQ 247
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 112 bits (282), Expect = 3e-32 Identities = 72/253 (28%), Positives = 118/253 (46%), Gaps = 12/253 (4%) Query: 3 QVAIITASDSGIGKECALLLAQQGFDIGITWHSDEEGAKDTAREVVSHGVRAEIVQLDLG 62 ++A IT + GIG+ A LA QG I ++ E+ K + AE D+ Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKA-EARHAEAFPADVR 67 Query: 63 NLPEGALALEKLIQRLGRIDVLVNNAGAMTKAPFLDMAFDEWRKIFTVDVDGAFLCSQIA 122 + ++ + +G ID+LVN AG + ++ +EW F+V+ G F S+ Sbjct: 68 DSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSV 127 Query: 123 ARQMVKQGQGGRIINITSVHEHTPLPDASAYTAAKHALGGLTKAMALELVRHKILVNAVA 182 ++ M+ + + G I+ + S P +AY ++K A TK + LEL + I N V+ Sbjct: 128 SKYMMDR-RSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVS 186 Query: 183 PGAIATPMNGM----DDGD---VKPGAEP---SIPLRRFGATHEIASLVVWLCSEGANYT 232 PG+ T M ++G +K E IPL++ +IA V++L S A + Sbjct: 187 PGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHI 246 Query: 233 TGQSLIVDGGFML 245 T +L VDGG L Sbjct: 247 TMHNLCVDGGATL 259
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 29.3 bits (66), Expect = 0.018 Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 5/127 (3%) Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEK-KFEIADAVQQAGATELVVHGRTKEQGY-RAE 179 G EA+ ++ + +G + E+ K EI A E+ V GR +G R Sbjct: 190 GGDRFDEAIINYVRRNYGSLIGEATAERIKHEIGSAYPGDEVREIEVRGRNLAEGVPRGF 249 Query: 180 HIDWQAIGE-IRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVK 238 ++ I E +++ L V A + + IS V+ G GAL + NL R++ Sbjct: 250 TLNSNEILEALQEPLTGIVSAVMVALEQCPPELASDISERGMVLTGGGAL-LRNLDRLL- 307 Query: 239 YNEPRMP 245 E +P Sbjct: 308 MEETGIP 314
>PF05272#Virulence-associated E family protein Length = 892 Score = 32.0 bits (72), Expect = 0.007 Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 17/74 (22%) Query: 24 PGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGTILFQGKEIDFHSAK 83 PG K D + L G G GKSTL+ L G+ F D + K Sbjct: 591 PGCKF-DYSVV---------LEGTGGIGKSTLINTLVGLD-------FFSDTHFDIGTGK 633 Query: 84 EALENGISMVHQEL 97 ++ E +V EL Sbjct: 634 DSYEQIAGIVAYEL 647
>ACETATEKNASE#Acetate kinase family signature. Length = 400 Score = 30.5 bits (69), Expect = 0.008 Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 8/77 (10%) Query: 4 IRDVARQAGVSVATVSRVLNNS------TLVSADTREAVMKAVSELDYRPNANAQALATQ 57 I + + +S V +LN + +S+D R+ A D R A + Sbjct: 249 ISYLMEKENISAEEVVNILNKKSGVYGISGISSDFRDLEDAAFKNGDKRAQLALNVFAYR 308 Query: 58 VSDTIG--VVVMDVSDA 72 V TIG M D Sbjct: 309 VKKTIGSYAAAMGGVDV 325
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 64.5 bits (157), Expect = 2e-14 Identities = 22/113 (19%), Positives = 48/113 (42%), Gaps = 2/113 (1%) Query: 9 VMIVDDHPLMRRGVRQLLELDSGFEVVAEAGDGASAIDLANRLDIDVILLDLNMKGMSGL 68 +++ DD +R + Q L +G++V + A+ D D+++ D+ M + Sbjct: 6 ILVADDDAAIRTVLNQALS-RAGYDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 69 DTLNALRRDGVTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIR 121 D L +++ +++++ + + GA YL K D L+ I Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116
>BCTERIALGSPC#Bacterial general secretion pathway protein C signature. Length = 272 Score = 28.0 bits (62), Expect = 0.007 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%) Query: 34 KHIVLWLGLALACLGLAMVLWLLVL-QNVPV 63 + I+ +L + L C LAM+ W + L N PV Sbjct: 15 RRILFYLLMLLFCQQLAMIFWRIGLPDNAPV 45
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 29.4 bits (66), Expect = 0.026 Identities = 32/192 (16%), Positives = 58/192 (30%), Gaps = 37/192 (19%) Query: 268 GYGLTEFASTVCAKEADGLADVGSPL----PGREVKIVNDEVWLRAASMAEGYWRNGQRV 323 G+G+ S + A + L ++ + G + I+ E + A + + R+ Sbjct: 40 GHGIERIWSAIGATDGFALLNLEEAITLRERGWKGPILMLEGFFHAQDLEIY---DQHRL 96 Query: 324 PLVNDEGWYATRDRGEMHNGKLTI-------VGRLDNLFFSGGEGIQPEEVERVIAAHPA 376 W + L I + RL G QP+ V V A Sbjct: 97 TTCVHSNWQLKALQNARLKAPLDIYLKVNSGMNRL---------GFQPDRVLTVWQQLRA 147 Query: 377 VLQVFIVPVADKEFGHRPVAVVEYDQQTVDLGEWVKDKLARFQQPVRWLTLPPELKNGGI 436 + V + + H A + + + +AR +Q L L N Sbjct: 148 MANVGEMTL----MSHFAEA---------EHPDGISGAMARIEQAAEGLECRRSLSNSAA 194 Query: 437 KISRQALK-EWV 447 + +WV Sbjct: 195 TLWHPEAHFDWV 206
>AUTOINDCRSYN#Autoinducer synthesis protein signature. Length = 216 Score = 32.1 bits (73), Expect = 5e-04 Identities = 13/74 (17%), Positives = 29/74 (39%), Gaps = 12/74 (16%) Query: 1 MIDWQDLHHSDLSVSQLYALLQLRCAVFV--------VEQNCPYQDIDGDDLEGENRHIL 52 M++ D++H+ LS ++ L LR F + D ++ ++ Sbjct: 1 MLEIFDVNHTLLSETKSGELFTLRKETFKDRLNWAVQCTDGMEFDQYDNNN----TTYLF 56 Query: 53 GWHNGTLVAYARIL 66 G + T++ R + Sbjct: 57 GIKDNTVICSLRFI 70
>VACJLIPOPROT#VacJ lipoprotein signature. Length = 251 Score = 407 bits (1048), Expect = e-148 Identities = 250/251 (99%), Positives = 251/251 (100%) Query: 1 MKLRLSALALGTTLLVGCASSGTDQQGRSDPLEGFNRTMYNFNFNVLDPYIVRPVAVAWR 60 MKLRLSALALGTTLLVGCASSGTDQQGRSDPLEGFNRTMYNFNFNVLDPYIVRPVAVAWR Sbjct: 1 MKLRLSALALGTTLLVGCASSGTDQQGRSDPLEGFNRTMYNFNFNVLDPYIVRPVAVAWR 60 Query: 61 DYVPQPARNGLSNFTGNLEEPAVMVNYFLQGDPYQGMVHFTRFFLNTILGMGGFIDVAGM 120 DYVPQPARNGLSNFTGNLEEPAVMVNYFLQGDPYQGMVHFTRFFLNTILGMGGFIDVAGM Sbjct: 61 DYVPQPARNGLSNFTGNLEEPAVMVNYFLQGDPYQGMVHFTRFFLNTILGMGGFIDVAGM 120 Query: 121 ANPKLQRTEPHRFGSTLGHYGVGYGPYVQLPFYGSFTLRDDGGDMADSLYPVLSWLTWPM 180 ANPKLQRTEPHRFGSTLGHYGVGYGPYVQLPFYGSFTLRDDGGDMAD+LYPVLSWLTWPM Sbjct: 121 ANPKLQRTEPHRFGSTLGHYGVGYGPYVQLPFYGSFTLRDDGGDMADALYPVLSWLTWPM 180 Query: 181 SVGKWTLEGIETRAQLLDSDGLLRQSSDPYIMVREAYFQRHDFIANGGELKPQENPNAQA 240 SVGKWTLEGIETRAQLLDSDGLLRQSSDPYIMVREAYFQRHDFIANGGELKPQENPNAQA Sbjct: 181 SVGKWTLEGIETRAQLLDSDGLLRQSSDPYIMVREAYFQRHDFIANGGELKPQENPNAQA 240 Query: 241 IQDDLKDIDSE 251 IQDDLKDIDSE Sbjct: 241 IQDDLKDIDSE 251
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 122 bits (308), Expect = 2e-32 Identities = 92/404 (22%), Positives = 167/404 (41%), Gaps = 17/404 (4%) Query: 19 VTIALSLATFMQMLDSTISNVAIPTISGFLGASTDEGTWVITSFGVANAIAIPVTGRLAQ 78 + I L + +F +L+ + NV++P I+ WV T+F + +I V G+L+ Sbjct: 15 ILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSD 74 Query: 79 RIGELRLFLLSVTFFSLSSLMCSLS-TNLDVLIFFRVVQGLMAGPLIPLSQSLLLRNYPP 137 ++G RL L + S++ + + +LI R +QG A L ++ R P Sbjct: 75 QLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPK 134 Query: 138 EKRTFALALWSMTVIIAPICGPILGGYICDNFSWGWIFLINVPMGIIVLTLCLTLLKGRE 197 E R A L V + GP +GG I W +L+ +PM I+ L L +E Sbjct: 135 ENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWS--YLLLIPMITIITVPFLMKLLKKE 192 Query: 198 TETSPVKMNLPGLTLLVLGVGGLQIMLDKGRDLDWFNSSTIILLTVVSVISLISLVIWES 257 ++ G+ L+ +G+ + ML F +S I +VSV+S + V Sbjct: 193 VRIKG-HFDIKGIILMSVGI--VFFML--------FTTSYSISFLIVSVLSFLIFVKHIR 241 Query: 258 TSENPILDLSLFKSRNFTIGIVSITCAYLFYSGAIVLMPQLLQETMGYNAIWAGLAYAPI 317 +P +D L K+ F IG++ + +G + ++P ++++ + G Sbjct: 242 KVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFP 301 Query: 318 GIMPLLIS-PLIGRYGNKIDMRLLVTFSFLMYAVCYYWRSVTFMPTIDFTGIILPQFFQG 376 G M ++I + G ++ ++ +V + S T F II+ G Sbjct: 302 GTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGG 361 Query: 377 FAVACFFLPLTTISFSGLPDNKFANASSMSNFFRTLSGSVGTSL 420 + ++TI S L + S+ NF LS G ++ Sbjct: 362 LSFTK--TVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAI 403
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 78.7 bits (194), Expect = 4e-18 Identities = 62/413 (15%), Positives = 124/413 (30%), Gaps = 98/413 (23%) Query: 13 RRKYFALLAVVLFIALSGAYAYWSMELKDMISTDDAYVTGNADPISAQVSGSVTVVNHKD 72 RR ++ F+ ++ + + +G + I + V + K+ Sbjct: 55 RRPRLVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKE 114 Query: 73 TNYVRQGDILVSLDKTDATIALNKA----------------------------------- 97 VR+GD+L+ L A K Sbjct: 115 GESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEP 174 Query: 98 -----------------KNNLANIVRQTNKLYLQDKQYSAEVASARIQ---YQQSLEDYN 137 K + Q + L + AE + + Y+ Sbjct: 175 YFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEK 234 Query: 138 RRV----PLAKQGVISKEALEHTKDTLI----------SSKAALNAAIQAYKANKALVMN 183 R+ L + I+K A+ ++ + S + + I + K + Sbjct: 235 SRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEE--YQLV 292 Query: 184 TPLNRQPQVIEAADATKE----------AWLALKRTDIKSPVTGYIAQRSVQ-VGETVSP 232 T L + + + T + + I++PV+ + Q V G V+ Sbjct: 293 TQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTT 352 Query: 233 GQSLMAVVPARQ-MWVNANFKETQLTDVRIGQSVNIISDLYGENVVFHGRVTGINMGTGN 291 ++LM +VP + V A + + + +GQ+ I + F G +G Sbjct: 353 AETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVE------AFPYTRYGYLVGK-- 404 Query: 292 AFSLLPAQNATGNWIKIVQRVPVEVSLDPKELMEH----PLRIGLSMTATIDT 340 + + +V V +S++ L PL G+++TA I T Sbjct: 405 -VKNINLDAIEDQRLGLVFNVI--ISIEENCLSTGNKNIPLSSGMAVTAEIKT 454
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 49.1 bits (117), Expect = 3e-09 Identities = 22/148 (14%), Positives = 53/148 (35%), Gaps = 31/148 (20%) Query: 4 IIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQV 63 ++ DD + L + ++ + + + + D+V+ DV +P N + Sbjct: 7 LVADDDAAIRTVLNQALSRAGYDVRIT-SNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 64 LETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYF 123 L ++K + ++++SA+N + AI+A++ G + Sbjct: 66 LPRIKKARPDLPVLVMSAQNT------------------------FMTAIKASEKGAYDY 101 Query: 124 ---PFSLNRFVGSLTSDQQKLDSLSKQE 148 PF L + + L ++ Sbjct: 102 LPKPFDLTE---LIGIIGRALAEPKRRP 126
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 79.5 bits (196), Expect = 2e-17 Identities = 31/105 (29%), Positives = 51/105 (48%) Query: 890 SILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKISMQHYDLLITDVNMPNMDGFE 949 +IL+ADD R +L + L+ GYDV ++ I+ DL++TDV MP+ + F+ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 950 LTRKLREQNSSLPIWGLTANAQANEREKGLNCGMNLCLFKPLTLD 994 L ++++ LP+ ++A K G L KP L Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLT 109
>PF05272#Virulence-associated E family protein Length = 892 Score = 34.3 bits (78), Expect = 8e-04 Identities = 11/33 (33%), Positives = 16/33 (48%) Query: 30 MVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFH 62 V L G G GK+TL+ + GL+ + H Sbjct: 598 SVVLEGTGGIGKSTLINTLVGLDFFSDTHFDIG 630
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 50.5 bits (121), Expect = 2e-09 Identities = 33/116 (28%), Positives = 50/116 (43%), Gaps = 9/116 (7%) Query: 63 VRDGIVWDFFGAVTIVRRHLD-TLEQQFGRRFSHAATSFPPGTDP---RISINVLESAGL 118 ++DG++ DFF +++ + F R P G R + AG Sbjct: 76 MKDGVIADFFVTEKMLQHFIKQVHSNSFMRPSPRVLVCVPVGATQVERRAIRESAQGAGA 135 Query: 119 EVSHVLDEPTAVA---DLLQLDNAG--VVDIGGGTTGIAIVKKGKVTYSADEATGG 169 +++EP A A L + G VVDIGGGTT +A++ V YS+ GG Sbjct: 136 REVFLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNGVVYSSSVRIGG 191
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 114 bits (288), Expect = 5e-30 Identities = 81/371 (21%), Positives = 144/371 (38%), Gaps = 74/371 (19%) Query: 23 GIDLGTTNSLVATVRSGQAETLADHEGRHLLPSVVHYQQQGHS-------VGYDARTNAA 75 IDLGT N+L+ G + +E PSVV +Q VG+DA+ Sbjct: 14 SIDLGTANTLIYVKGQG----IVLNE-----PSVVAIRQDRAGSPKSVAAVGHDAK-QML 63 Query: 76 LDTANTISSVKRLMGRSLADIQQRYPHLPYQFQASENGLPMIETAAGLLNPVRVSADILK 135 T I++++ + +AD V+ +L+ Sbjct: 64 GRTPGNIAAIRPMKDGVIADF-------------------------------FVTEKMLQ 92 Query: 136 ALAARATEALAGE-LDGVVITVPAYFDDAQRQGTKDAARLAGLHVLRLLNEPTAAAIAYG 194 + V++ VP +R+ +++A+ AG + L+ EP AAAI G Sbjct: 93 HFIKQVHSNSFMRPSPRVLVCVPVGATQVERRAIRESAQGAGAREVFLIEEPMAAAIGAG 152 Query: 195 LDSGQEGVIAVYDLGGGTFDISILRLSRGVFEVLATGGDSALGGDDFDHLLADYIREQAG 254 L + V D+GGGT +++++ L+ V +GGD FD + +Y+R G Sbjct: 153 LPVSEATGSMVVDIGGGTTEVAVISLNGVV-----YSSSVRIGGDRFDEAIINYVRRNYG 207 Query: 255 --IPDRSDNRVQRELLDAAIAAKIALSDADSVTVNVAG---WQG-----EISREQFNELI 304 I + + R++ E+ A + + V G +G ++ + E + Sbjct: 208 SLIGEATAERIKHEI-------GSAYPGDEVREIEVRGRNLAEGVPRGFTLNSNEILEAL 260 Query: 305 APLVKRTLLACRRALKDAGVE-ADEVLE--VVMVGGSTRVPLVRERVGEFFGRPPLTSID 361 + + A AL+ E A ++ E +V+ GG + + + E G P + + D Sbjct: 261 QEPLTGIVSAVMVALEQCPPELASDISERGMVLTGGGALLRNLDRLLMEETGIPVVVAED 320 Query: 362 PDKVVAIGAAI 372 P VA G Sbjct: 321 PLTCVARGGGK 331
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 26.3 bits (58), Expect = 0.032 Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 11/87 (12%) Query: 4 KTLTAAAAVLLMLTAGCSTLERVVYRPDINQGNYLTANDVSKIRV--GMTQQQVAYALGT 61 K + AVL + AG LER ++ Q + + + VS+ + GMT ++ A Sbjct: 69 KVV-LCGAVLARVDAGDEQLERKIH---YRQQDLVDYSPVSEKHLADGMTVGELCAA--A 122 Query: 62 PLMSDPFGTNTWFYVFRQQPGHEGVTQ 88 MSD N + G G+T Sbjct: 123 ITMSDNSAANL---LLATVGGPAGLTA 146
>PF07675#Cleaved Adhesin Length = 1358 Score = 26.2 bits (57), Expect = 0.014 Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 1/36 (2%) Query: 31 INVDRVPEAAEALRAQG-FRQLPVVIAGDLSWSGFR 65 V PEA R QG + Q V + + FR Sbjct: 750 KTVVTAPEAIRGTRVQGTWYQKTVQLPAGTKYVAFR 785
>ARGREPRESSOR#Bacterial arginine repressor signature. Length = 149 Score = 27.9 bits (62), Expect = 0.024 Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 5/45 (11%) Query: 1 MKPRQRQAAILEYLQKQGKCSVEEL-----AQYFDTTGTTIRKDL 40 M QR I E + + +EL ++ T T+ +D+ Sbjct: 1 MNKGQRHIKIREIITANEIETQDELVDILKKDGYNVTQATVSRDI 45
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 372 bits (956), Expect = e-126 Identities = 125/388 (32%), Positives = 193/388 (49%), Gaps = 33/388 (8%) Query: 149 IAALAAGALS----------NALLIEQLESQNMLPGDAAPFEAVKQTQMIGLSPGMTQLK 198 I A GA +I + ++ ++ ++G S M ++ Sbjct: 91 IKASEKGAYDYLPKPFDLTELIGIIGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIY 150 Query: 199 KEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFG 258 + + + +DL ++I+GE+GTGKELVA+A+H+ R P V +N AA+P + ESELFG Sbjct: 151 RVLARLMQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFG 210 Query: 259 HVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRSLR 318 H KGAFTGA + +G+FE A+ GTLFLDEIG++ + Q +LLRVLQ G+ VG +R Sbjct: 211 HEKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIR 270 Query: 319 VDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRL 378 DVR++AATN+DL++ + G FR DL++RL+V PL +PPLR+R +D+ L +F +Q Sbjct: 271 SDVRIVAATNKDLKQSINQGLFREDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAE- 329 Query: 379 RLGLSRVVLSAGARNLLQHYNFPGNVRELEHAIHRAVVLSRATRSGDEVIL-----EAQH 433 + GL A L++ + +PGNVRELE+ + R L E+I E Sbjct: 330 KEGLDVKRFDQEALELMKAHPWPGNVRELENLVRRLTALYPQDVITREIIENELRSEIPD 389 Query: 434 FAFPEVTLPPPEAAAVPVVKQNLR-----------------EATEAFQRETIRQALAQNH 476 + + V++N+R + I AL Sbjct: 390 SPIEKAAARSGSLSISQAVEENMRQYFASFGDALPPSGLYDRVLAEMEYPLILAALTATR 449 Query: 477 HNWAACARMLETDVANLHRLAKRLGLKD 504 N A +L + L + + LG+ Sbjct: 450 GNQIKAADLLGLNRNTLRKKIRELGVSV 477
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 24.4 bits (53), Expect = 0.038 Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 1/32 (3%) Query: 22 IRFLMN-ILSLPVHIWVLFSDKSFWWYKKVIA 52 + F+M + +P +WV+F + F W I Sbjct: 218 VFFIMQLVGQVPAALWVIFGEDRFHWDATTIG 249
>PF07675#Cleaved Adhesin Length = 1358 Score = 30.4 bits (68), Expect = 0.021 Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 12/92 (13%) Query: 206 ILGQTYLPRKFKTTVVIP---PQND--IDLHANDMNFVAIAENGKLVGFNLLVGGGLSIE 260 ++ +P+ T +P PQN + A+ ++VAI+++G L G + G++ Sbjct: 240 VMPYRAMPKT--NTYTLPASLPQNQASYSIQASAGSYVAISKDGVLYGTGVANASGVATV 297 Query: 261 HGNK-----KTYARTASEFGYLPLEHTLAVAE 287 + K Y + YLP+ + E Sbjct: 298 NMTKQITENGNYDVVITRSNYLPVIKQIQAGE 329
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 36.4 bits (84), Expect = 2e-04 Identities = 45/314 (14%), Positives = 112/314 (35%), Gaps = 36/314 (11%) Query: 69 LGSLVLGWISDHIGRQKIFTFSFMLITLASFLQFFATTP-EHLIGLRILIGIGLGGDYSV 127 +G+ V G +SD +G +++ F ++ S + F + LI R + G G ++ Sbjct: 64 IGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPAL 123 Query: 128 GHTLLAEFSPRRHRGILLGAFSVVWT----VGYVLASIAGHHFISESPEAWRWLLASAAL 183 ++A + P+ +RG G + VG + + H+ W +LL + Sbjct: 124 VMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYI------HWSYLLLIPMI 177 Query: 184 PALLITLLRWGTPESPRWLLRQGRFAEAHAIVHRYFGPHVLLGDEVATATHKHIKTLF-- 241 + + L + R +G F I+ +L + + + L Sbjct: 178 TIITVPFLMKLLKKEVR---IKGHFDIKGIILMSVGIVFFMLFTTSYSISFLIVSVLSFL 234 Query: 242 -SSRYWRRTA--------FNSVFFVCLVIPWFVIYT----WLPTIAQTIGLEDALTASLM 288 ++ R+ ++ F+ V+ +I+ ++ + + L+ + + Sbjct: 235 IFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEI 294 Query: 289 LNALLIVGALLGLV-------LTHLLAHRKFLLGSFLLLAATLVVMACLPSGSSLTLLLF 341 + ++ G + ++ L L L+ + + + L +S + + Sbjct: 295 GSVIIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTII 354 Query: 342 VLFSTTISAVSNLV 355 ++F + + V Sbjct: 355 IVFVLGGLSFTKTV 368
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 105 bits (264), Expect = 2e-29 Identities = 73/257 (28%), Positives = 117/257 (45%), Gaps = 11/257 (4%) Query: 11 MDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANVFIPSFVKDNGETKEMIEK-QGVEVD 69 M+ ++GK A +TG G+G+A A LA GA++ + + E K + + Sbjct: 1 MNAKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAE 60 Query: 70 FMQVDITAEGAPQKIIAACCERFGTVDILVNNAGICKLNKVLDFGRADWDPMIDVNLTAA 129 D+ A +I A G +DILVN AG+ + + +W+ VN T Sbjct: 61 AFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGV 120 Query: 130 FELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAYCDELGQYNI 189 F S +K M+ ++SG I+ + S + + AY+++K A FTK EL +YNI Sbjct: 121 FNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNI 180 Query: 190 QVNGIAPGYYATDI--TLATRSNPETNQRVLDH-------IPANRWGDTQDLMGAAVFLA 240 + N ++PG TD+ +L N Q + IP + D+ A +FL Sbjct: 181 RCNIVSPGSTETDMQWSLWADENGAE-QVIKGSLETFKTGIPLKKLAKPSDIADAVLFLV 239 Query: 241 SPASNYVNGHLLVVDGG 257 S + ++ H L VDGG Sbjct: 240 SGQAGHITMHNLCVDGG 256
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 32.9 bits (75), Expect = 0.002 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 1/76 (1%) Query: 41 GFSNTEIGLIMSTFGIAAIIFYA-PSGVIADKFSHRKMITSAMIITGLLGLLMATYPPLW 99 + T IG+ ++ FGI + A +G +A + R+ + MI G +L+A W Sbjct: 242 HWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGW 301 Query: 100 VMLCIQVAFAITTILM 115 + I V A I M Sbjct: 302 MAFPIMVLLASGGIGM 317 Score = 30.6 bits (69), Expect = 0.011 Identities = 21/103 (20%), Positives = 45/103 (43%), Gaps = 8/103 (7%) Query: 48 GLIMSTFGIAAIIFYAPSGVIADKFSHRKMITSAMIITGLLGLLMATYPPLWVMLCIQVA 107 G++++ + + G ++D+F R ++ ++ + +MAT P LWV+ ++ Sbjct: 46 GILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIV 105 Query: 108 FAITTILMLWSVSIKAASLLGD---HSEQGKIMGWMEGLRGVG 147 IT + A + + D E+ + G+M G G Sbjct: 106 AGITG-----ATGAVAGAYIADITDGDERARHFGFMSACFGFG 143
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 76.9 bits (189), Expect = 2e-17 Identities = 43/129 (33%), Positives = 61/129 (47%), Gaps = 14/129 (10%) Query: 428 QTVRLDSMSLFDVGQARLKDGSTKVL---VDALVNIRAKPGWLILVAGYTDATGDEKSNQ 484 + L S LF+ +A LK L L N+ K G ++V GYTD G + NQ Sbjct: 213 KHFTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDG-SVVVLGYTDRIGSDAYNQ 271 Query: 485 QLSLRRAEAVRNWMLQTSDIPATCFAVQGLGESQPAATNDTPQGR---------AVNRRV 535 LS RRA++V ++ L + IPA + +G+GES P N + A +RRV Sbjct: 272 GLSERRAQSVVDY-LISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRV 330 Query: 536 EISLVPRSD 544 EI + D Sbjct: 331 EIEVKGIKD 339
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 34.4 bits (79), Expect = 0.002 Identities = 36/189 (19%), Positives = 67/189 (35%), Gaps = 34/189 (17%) Query: 512 IMTLRQEGTDSSELQQQLRTHQGFAPLLALDVDARAVATVVADWTG----IPLSSLL--- 564 + + ++ +L +++ + P+L + + + A G +P L Sbjct: 52 VTDVVMPDENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTEL 111 Query: 565 RDEQSDLLSMEQSLENR----------VVGQSPALCAIAQRL-RAAKTGLTPENGPQGVF 613 L+ + ++ +VG+S A+ I + L R +T LT Sbjct: 112 IGIIGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLT--------L 163 Query: 614 LLTGPSGTGKTETALTLADTLFGGEKSLITINLSEYQEPHTVSQLKGSPPGYVGYGQGGV 673 ++TG SGTGK A L D + IN++ S+L G + G Sbjct: 164 MITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGH--------EKGA 215 Query: 674 LTEAVRKRP 682 T A + Sbjct: 216 FTGAQTRST 224
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 28.9 bits (64), Expect = 0.011 Identities = 13/83 (15%), Positives = 36/83 (43%), Gaps = 9/83 (10%) Query: 33 ESKSVASAVFYKQIKILHLDFFSR---------SALNTDAEDTPLSTMVHVWQLKTREDF 83 + + V+Y+ K + LD S+ + + + ++D+ S ++ + K + + Sbjct: 161 INSEQSKEVYYEIGKGISLDIISKDKSLDPEFLNLIKSLSDDSDSSDLLFSQKFKEKLEL 220 Query: 84 DKADYDTLFMQEEKTLEKNVLAK 106 + D F++E T ++ + Sbjct: 221 NNKSIDINFIKENLTEFQHAFSL 243
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 29.3 bits (65), Expect = 0.023 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 3/55 (5%) Query: 259 ETAAKKSEAYQQKLWEKIDADTRAQAKAMGGEIVKVDKAPFR-KAVQPLFDDFKK 312 ET K + Q L +KI D +GGEI D K +Q L ++ K Sbjct: 74 ETLDKIQQT--QDLLKKIPKDVLEIYSELGGEIYFTDIDLVEHKELQDLSEEEKN 126
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 31.5 bits (71), Expect = 0.014 Identities = 31/146 (21%), Positives = 57/146 (39%), Gaps = 9/146 (6%) Query: 64 FPNNKFGYTQKSNL--YLSINNKEAAKKIIDESPIDINNRH-NVNKKQPVAKKDNKKSII 120 KFG +Q S Y E A+ I P+ H + K ++ S Sbjct: 115 LDQEKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSAS 174 Query: 121 IISDAEIKKMVSNCKYNEIIDLLQSKLEELSLEQVLILAKSFQQIGKYTEAYKTLIDAQV 180 + E + + + + ++ L+ S + L V ++ +S + + + + L DAQ+ Sbjct: 175 VTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQL 234 Query: 181 KFPN------ERKILMRLGEILQNDK 200 KF N +R+I L I+ N Sbjct: 235 KFANDVESRIQRRIEAILSPIVGNGN 260
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 51.0 bits (122), Expect = 4e-11 Identities = 31/137 (22%), Positives = 65/137 (47%), Gaps = 19/137 (13%) Query: 8 GTFDVLHIGHIKILERAKEYGDRLIVGVSSDALSFSKKQRYPVYPENERCEIIR-SLQYV 66 G+FD + GH+ I+ER D++ V V + + P++ ER E I ++ ++ Sbjct: 7 GSFDPITFGHLDIIERGCRLFDQVYVAVLRN------PNKQPMFSVQERLEQIAKAIAHL 60 Query: 67 DDVFLEESLELKGEYIKKYKADILIMG----NDWEGKFDM---FKKL---CEVIYLPRTE 116 + ++ L Y ++ +A ++ G +D+E + M K L E ++L + Sbjct: 61 PNAQVDSFEGLTVNYARQRQAGAILRGLRVLSDFELELQMANTNKTLASDLETVFLTTST 120 Query: 117 GIS--TTKLITEIKKYG 131 S ++ L+ E+ ++G Sbjct: 121 EYSFLSSSLVKEVARFG 137
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 33.4 bits (76), Expect = 6e-04 Identities = 29/125 (23%), Positives = 54/125 (43%), Gaps = 10/125 (8%) Query: 137 ITNFLQLVLTWSLLIILS--CGVGLIF----MVVGKTFPEMQKVL---PILLKPLYFISC 187 + L SLL L GL F MVV P + +++ P+ F+S Sbjct: 135 VAAALGYTQWLSLLYALPVIALTGLAFASLGMVVTALAPSYDYFIFYQTLVITPILFLSG 194 Query: 188 IMFPLHSIPKQYWSYLLWNPLVHVVELSREAVMPGYISE-GVSLNYLAMFTLVTLFIGLA 246 +FP+ +P + + + PL H ++L R ++ + + + L ++ ++ F+ A Sbjct: 195 AVFPVDQLPIVFQTAARFLPLSHSIDLIRPIMLGHPVVDVCQHVGALCIYIVIPFFLSTA 254 Query: 247 LYRTR 251 L R R Sbjct: 255 LLRRR 259
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 30.2 bits (68), Expect = 0.002 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 3/48 (6%) Query: 1 MRRTR--AGFTLLEMLVAIAIFASLA-LMAQQVTNGVTRVNSAVAGHD 45 MR T GFTLLE++V I I LA L+ + + + A D Sbjct: 1 MRATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSD 48
>PilS_PF08805#PilS N terminal Length = 185 Score = 33.8 bits (77), Expect = 9e-05 Identities = 15/52 (28%), Positives = 26/52 (50%) Query: 3 RGFTLLEVILALAIFALAATAVLQIASGALSNQQILEEKTVAGWVAENQTAL 54 +G TL+EV+L + + + A + ++ S SN Q E+ V N +L Sbjct: 26 KGATLMEVLLVVGVIVVLAASAYKLYSMVQSNIQSSNEQNNVLTVIANMKSL 77
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 77.7 bits (191), Expect = 2e-20 Identities = 38/166 (22%), Positives = 65/166 (39%), Gaps = 28/166 (16%) Query: 1 MPERGFTLLEIMLVIFLIGLASAGVVQTFATASEPPAKKAAQDFLTRFAQFKDRAVIEGQ 60 M +RGFTLLE+ML++ L+G+++ V+ F + + A + F + + R + GQ Sbjct: 1 MRQRGFTLLEMMLILLLMGVSAGMVLLAFPASRDDSAAQTLARFEAQLRFVQQRGLQTGQ 60 Query: 61 TLGVLIDPPGYQFMQRRHGQWLPVSATRLSAQVTVPKQVQMLLQPGSDIWQKEYALELQR 120 GV + P +QF+ + P D W L L+ Sbjct: 61 FFGVSVHPDRWQFLVLEARDGADPA-------------------PADDGWSGYRWLPLRA 101 Query: 121 RRL----TLHDIELEL-----QKEAKKKTPQIRFSPFEPVTPFTLR 157 R+ ++ +L L + P + P +TPF L Sbjct: 102 GRVATSGSIAGGKLNLAFAQGEAWTPGDNPDVLIFPGGEMTPFRLT 147
>PF07675#Cleaved Adhesin Length = 1358 Score = 29.3 bits (65), Expect = 0.048 Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 16/112 (14%) Query: 14 SAAPLYAADVPANTPLAPQQVFRYNNHSDPGTLDPQKVEENTAAQIVL------------ 61 + PL+ +N A + + ++DP + Q + ++V+ Sbjct: 421 ATGPLFTGTASSNLYSANFE-YLTPANADP-VVTTQNIIVTGQGEVVIPGGVYDYCITNP 478 Query: 62 DLFEGLVWMDGEGQVQPAQAERWEILDGGKRYIFHLRSGLQWSDGQPLTAED 113 + G +W+ G+G QPA+ + + + GK+Y F +R DG + ED Sbjct: 479 EPASGKMWIAGDGGNQPARYDDF-AFEAGKKYTFTMRR-AGMGDGTDMEVED 528
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 88.0 bits (218), Expect = 2e-22 Identities = 30/124 (24%), Positives = 56/124 (45%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 IL+ +DD I + LS+ G+ V + + + D V+ D+ +P + D Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 +L ++ PVL+++A++ ++ GA DYL KPF L E+ + + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 122 QASN 125 + S Sbjct: 125 RPSK 128
>PF06580#Sensor histidine kinase Length = 349 Score = 37.5 bits (87), Expect = 8e-05 Identities = 38/176 (21%), Positives = 62/176 (35%), Gaps = 29/176 (16%) Query: 284 DRATRLVDQLLTLSRLDSLDNLQDVAEIPLEDLLQSSVMDIYHTAQQAKIDVRLTLKANG 343 +A ++ L L R SL ++ L D L +V+D Y + + RL + Sbjct: 191 TKAREMLTSLSELMRY-SLRYSNA-RQVSLADEL--TVVDSYLQLASIQFEDRLQFENQI 246 Query: 344 IKRTGQ----PLLLSLLVRNLLDNAVRYSPQGSVVDVTLNADN----FIVRDNGPGVTPE 395 P+L+ LV N + + + PQG + + DN V + G Sbjct: 247 NPAIMDVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKN 306 Query: 396 ALARIGERFYRPPGQTATGSGLGLSIV-QRIAKLHDMNVEFG-NAKQGGFEAKVSW 449 T +G GL V +R+ L+ + + KQG A V Sbjct: 307 ---------------TKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLI 347
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 686 bits (1773), Expect = 0.0 Identities = 234/878 (26%), Positives = 402/878 (45%), Gaps = 70/878 (7%) Query: 14 HAIKNALSG------VVCSLLFVLP--AHAVEFNVDMIDVEDRENIDISRFEKKGYIPPG 65 H K+ L+G V C+ P + + FN + + + D+SRFE +PPG Sbjct: 17 HIRKHRLAGFFVRLFVACAFAAQAPLSSAELYFNPRFLADDPQAVADLSRFENGQELPPG 76 Query: 66 RYLARVQINKNMLPQALILEWVKADNESGSLLCLTKEDLTSFGLNTEFIESLQTIAGREC 125 Y + +N + + + D+E G + CLT+ L S GLNT + + +A C Sbjct: 77 TYRVDIYLNNGYMATRDV-TFNTGDSEQGIVPCLTRAQLASMGLNTASVSGMNLLADDAC 135 Query: 126 LDLSQR-QELTTRLDKATMILSLSVPQAWLKYQATNWTPPEFWDTGIAGFILDYNVYASQ 184 + L+ + T +LD L+L++PQA++ +A + PPE WD GI +L+YN + Sbjct: 136 VPLTSMIHDATAQLDVGQQRLNLTIPQAFMSNRARGYIPPELWDPGINAGLLNYNFSGNS 195 Query: 185 YAPHHGDSTQNVSSYGTLGFNLGAWRLRSDYQYNQNFADGRSVNRDS-EFARTYLFRPIP 243 G ++ G N+GAWRLR + ++ N +D S +++ + T+L R I Sbjct: 196 VQNRIGGNSHYAYLNLQSGLNIGAWRLRDNTTWSYNSSDSSSGSKNKWQHINTWLERDII 255 Query: 244 SWSSKFTMGQYDLSSNLYDTFHFTGASLESDESMLPPDLQGYAPQITGIAQTNAKVTVAQ 303 S+ T+G +++D +F GA L SD++MLP +G+AP I GIA+ A+VT+ Q Sbjct: 256 PLRSRLTLGDGYTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQVTIKQ 315 Query: 304 NGRVLYQTTVAPGPFTISDL-GQSFQGQLDVTVEEEDGRTSTFQVGSASIPYLTRKGQVR 362 NG +Y +TV PGPFTI+D+ G L VT++E DG T F V +S+P L R+G R Sbjct: 316 NGYDIYNSTVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQREGHTR 375 Query: 363 YKTSLGKPTSVGHNDINNPFFWTAEASWGWLNNVSLYGGGMFTADDYQAITTGIGFNLNQ 422 Y + G+ S P F+ + G ++YGG AD Y+A GIG N+ Sbjct: 376 YSITAGEYRSGNAQQE-KPRFFQSTLLHGLPAGWTIYGGTQL-ADRYRAFNFGIGKNMGA 433 Query: 423 FGSLSFDVTGADASLQKQNSDNLRGYSYRFNYAKHFESTGSQITFAGYRFSDKDYVSMSE 482 G+LS D+T A+++L + + G S RF Y K +G+ I GYR+S Y + ++ Sbjct: 434 LGALSVDMTQANSTLPDDSQHD--GQSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFAD 491 Query: 483 YLSSRNGDESID--------------------NEKESYVISLNQYFETLELNSYLNVTRN 522 SR +I+ N++ +++ Q YL+ + Sbjct: 492 TTYSRMNGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRT-STLYLSGSHQ 550 Query: 523 TYWDS-ASNTNYSVSVSKNFDIGDFKGISASLAVSRIR--WDDDEENQYYFSFSLPL--- 576 TYW + + + ++ F+ I+ +L+ S + W + + ++P Sbjct: 551 TYWGTSNVDEQFQAGLNTA-----FEDINWTLSYSLTKNAWQKGRDQMLALNVNIPFSHW 605 Query: 577 --------QQNRNISYSMQRTGSSNTSQMISWYDS--SDRNNIWNISASATDDNIRDGEP 626 ++ + SYSM + + + Y + D N +++ + Sbjct: 606 LRSDSKSQWRHASASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGDGNSGS 665 Query: 627 TLRGSYQHYSPWGRLNINGSVQPNQYNSVTAGWYGSLTATRHGVALHDYSYADNARMMVD 686 T + + +G NI S + + G G + A +GV L ++ ++V Sbjct: 666 TGYATLNYRGGYGNANIGYSHS-DDIKQLYYGVSGGVLAHANGVTLGQPL--NDTVVLVK 722 Query: 687 TDGISGVEINSNRTV-TNGLGIAVVPSLSNYTTSMLRVNNNDLPEGVDVENSVIRTTLTQ 745 G ++ + V T+ G AV+P + Y + + ++ N L + VD++N+V T+ Sbjct: 723 APGAKDAKVENQTGVRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVPTR 782 Query: 746 GAIGYAKLNATTGYQIVGVIRQENGRFPPLGVNVTDKATGKDVGLVAEDGFVYLSGIQEN 805 GAI A+ A G +++ + N + P G VT + + G+VA++G VYLSG+ Sbjct: 783 GAIVRAEFKARVGIKLLMTLTH-NNKPLPFGAMVTS-ESSQSSGIVADNGQVYLSGMPLA 840 Query: 806 SILHLTWGD---NTCEVT---PPNQSNISESAIILPCK 837 + + WG+ C PP + + C+ Sbjct: 841 GKVQVKWGEEENAHCVANYQLPPESQQQLLTQLSAECR 878
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 50.4 bits (120), Expect = 1e-08 Identities = 46/287 (16%), Positives = 92/287 (32%), Gaps = 16/287 (5%) Query: 197 PNNAFDAEGLTKLTQETERRRRERNEVEQDVEVAVREKNRDALSRKLEIEQQEAFMTLEQ 256 N A+ + + E R A + + ++ E +QE+ + Sbjct: 999 TPNNIQAD-VPSVPSNNEEIARVDEAPVPPPAPATPSETTETVA---ENSKQESKTVEKN 1054 Query: 257 EQQVKTRTAEQNAKIAAFEAERRREAE-QTRILAERQIQETEIDREQAVRSRKVEAEREV 315 EQ TA+ + A EA+ +A QT +A+ + E + + VE E + Sbjct: 1055 EQDATETTAQN--REVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKA 1112 Query: 316 RIKEIEQQQVTEIANQTKSIAIAAKSEQ---QSQAEARANLALAEAVSAQQNVETTRQTA 372 +++ + Q+V ++ +Q +++ Q + E + + E S T Q A Sbjct: 1113 KVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPA 1172 Query: 373 EADRAKQVALIAAAQDAET------KAVELTVRAKAEKEAAEMQAAAIVELAEATRKKGL 426 + + + + T T +E + R Sbjct: 1173 KETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPH 1232 Query: 427 AEAEAQRALNDAINVLSDEQTSLKFKLALLQALPAVIEKSVEPMKSI 473 A + ND V + TS L A ++ K++ Sbjct: 1233 NVEPATTSSNDRSTVALCDLTSTNTNAVLSDARAKAQFVALNVGKAV 1279
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 29.0 bits (65), Expect = 0.029 Identities = 10/37 (27%), Positives = 20/37 (54%) Query: 347 GVFDILHAGHVSYLANARKLGDRLIVAVNSDASTKRL 383 G FD + GH+ + +L D++ VAV + + + + Sbjct: 7 GSFDPITFGHLDIIERGCRLFDQVYVAVLRNPNKQPM 43
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 29.0 bits (65), Expect = 0.014 Identities = 8/22 (36%), Positives = 13/22 (59%) Query: 4 VLITGATGLVGGHLLRMLINEP 25 L+TGA G +G H+ + L+ Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAG 24
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 73.4 bits (180), Expect = 2e-15 Identities = 70/313 (22%), Positives = 110/313 (35%), Gaps = 77/313 (24%) Query: 396 IMGHVDHGKTSLLDYI-----RSTKVASGEAG-------------GITQHIGAYHVETEN 437 ++ HVD GKT+L + + T++ S + G GIT G + EN Sbjct: 8 VLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWEN 67 Query: 438 GMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAGVPVVVAV 497 + +DTPGH F + R D +L+++A DGV QT + G+P + + Sbjct: 68 TKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFI 127 Query: 498 NKIDKPEADPDRV----KNELSQYGI-----------------LPEEWG----------- 525 NKID+ D V K +LS + E+W Sbjct: 128 NKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEGNDDLLE 187 Query: 526 ---------------GESQFV---------HVSAKAGTGIDELLDAILLQAEVLELKAVR 561 ES H SAK GID L++ I + Sbjct: 188 KYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVIT--NKFYSSTHRG 245 Query: 562 KGMASGAVIESFLDKGRGPVATVLVREGTLHKGDIVL-CGFEYGRVRAMRNELGQEVLEA 620 + G V + + R +A + + G LH D V E ++ M + E+ + Sbjct: 246 QSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKIKITEMYTSINGELCKI 305 Query: 621 GPSIPVEILGLSG 633 + EI+ L Sbjct: 306 DKAYSGEIVILQN 318
>MYCMG045#Hypothetical mycoplasma lipoprotein (MG045) signature. Length = 483 Score = 28.5 bits (63), Expect = 0.017 Identities = 30/144 (20%), Positives = 53/144 (36%), Gaps = 17/144 (11%) Query: 57 ALSYRLIAQHVEYYSDQAVSWFTQPVLTTFDKDKIPTWSVKADKAKLTNDRMLYLYGHVE 116 AL +I + + +A L D+ K +K D+ T+D YL G ++ Sbjct: 307 ALDLLVINKQQSNFQKEAHEIIFDLALDGADQTKEQL--IKTDEELGTDDEDFYLKGAMQ 364 Query: 117 ----VNALVPDSQLRRITT----------DNAQINLVTQDVTSEDLVTLYGTTFNSSGLK 162 VN + P + +T + + T +TSE Y T + K Sbjct: 365 NFSYVNYVSPLKVISDPSTGIVSSKKNNAEMKSKQMSTDQMTSEKEFDYYTETLKALLEK 424 Query: 163 M-RGNLRSKNAELIEKVRTSYEIQ 185 L +L+E ++ +Y I+ Sbjct: 425 EDSAELNENEKKLVETIKKAYTIE 448
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 64.5 bits (157), Expect = 7e-13 Identities = 26/115 (22%), Positives = 45/115 (39%), Gaps = 4/115 (3%) Query: 528 VLLVEDIELNVIVARSVLEKLGNSVDVAMTGKAALEMFKPGEYDLVLLDIQLPDMTGLDI 587 +L+ +D V L + G V + G+ DLV+ D+ +PD D+ Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 588 SRELTKRYPREDLPPLVALTA-NVLKDKQEYLNAGMDDVLSKPLSVPALTAMIKK 641 + K P P++ ++A N + G D L KP + L +I + Sbjct: 66 LPRIKKARPD---LPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 58.0 bits (140), Expect = 3e-11 Identities = 66/408 (16%), Positives = 139/408 (34%), Gaps = 33/408 (8%) Query: 30 LLDGFDFVLIALVLTEVQGEFGLTTVQAASLISAAFISRWFGGLMLGAMGDRYGRRLAMV 89 + +++ + L ++ +F + +A ++ G + G + D+ G + ++ Sbjct: 24 FFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLL 83 Query: 90 TSIVLFSAGTLACGFAPGYITMFI-ARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGF 148 I++ G++ + ++ I AR + G G A V PK R KA G Sbjct: 84 FGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGL 143 Query: 149 LISGFSVGAVVAAQVYSLVVPVWGWRALFFIGILPIIFALWLRKNIPEAEDWKEKHGGKA 208 + S ++G V + ++ W L I ++ II +L K + + Sbjct: 144 IGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKEVR--------- 194 Query: 209 PVRTMVDILYRGEHRIANIVMTLAAATALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQ 268 +G I I++ + IV+VL L IF+ + + Sbjct: 195 ---------IKGHFDIKGIILMSVGIVFFMLFTTSYSISFLIVSVLSFL---IFVKHIRK 242 Query: 269 STGK----RWPTGVMLMVVVLFAFLYSWPIQA---LLPTYLKTDLAYDPHTVANVLFFSG 321 T + M+ VL + + ++P +K + +V+ F G Sbjct: 243 VTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPG 302 Query: 322 -FGAAVGCCVGGFLGDWLGTRK-AYVCSLLASQLLIIPVFAIGGANVWVLGLLLFFQQML 379 + +GG L D G + S + F + W + +++ F Sbjct: 303 TMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLET-TSWFMTIIIVFVLGG 361 Query: 380 GQGISGILPKLIGGYFDTDQRAAGLGFTYNVGALGGALAP-ILGALIA 426 ++ ++ + AG+ L I+G L++ Sbjct: 362 LSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLS 409
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 27.5 bits (61), Expect = 0.026 Identities = 8/27 (29%), Positives = 16/27 (59%) Query: 127 IEADKSGTVKAILVESGQPVEFDEPLV 153 I+ ++ VK I+V+ G+ V + L+ Sbjct: 99 IKPIENSIVKEIIVKEGESVRKGDVLL 125
>MALTOSEBP#Maltose binding protein signature. Length = 396 Score = 39.3 bits (91), Expect = 2e-05 Identities = 39/160 (24%), Positives = 66/160 (41%), Gaps = 14/160 (8%) Query: 134 GHLLSQPFNSSTPVLYYNKDAFKKAGLDPEQPPKTWQDLADYAAKLKASGMKCGYASGWQ 193 G L++ P L YNKD PPKTW+++ +LKA G + + Sbjct: 127 GKLIAYPIAVEALSLIYNKDLLP-------NPPKTWEEIPALDKELKAKGKSALMFNLQE 179 Query: 194 GWIQLENFSAWNGLPFASKNNGFDGTDAVLEF--NKPEQVKHIAMLEEMNKKGDFSYVGR 251 + +A G F +N +D D ++ K + +++ + D Y Sbjct: 180 PYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDY--- 236 Query: 252 KDESTEKFYNGDCAMTTASSGSLANIREYAKFNYGVGMMP 291 + F G+ AMT + +NI + +K NYGV ++P Sbjct: 237 -SIAEAAFNKGETAMTINGPWAWSNI-DTSKVNYGVTVLP 274
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 52.0 bits (124), Expect = 4e-09 Identities = 40/182 (21%), Positives = 64/182 (35%), Gaps = 15/182 (8%) Query: 19 EQTPEKETEVQNEQPVVEEI---VQEQEPVKASEQAVEEQPQAHTEAEAETFAADVVEVT 75 TP + TE E E EQ+ + + Q E +A + +A T EV Sbjct: 1030 PATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTN---EVA 1086 Query: 76 EQVAESEKAQPEAEVVAQPEPVVEETPEPVAIEREELPLPEDVNAEAVSPEEWQAEAETV 135 + +E+++ Q E E E +E E+ V ++ VSP++ Q+E Sbjct: 1087 QSGSETKETQTT----ETKETATVEKEEKAKVETEKTQEVPKVTSQ-VSPKQEQSETVQP 1141 Query: 136 EIVEAAEEEAAKEEITDEEPEAQALAAEVA---EEAVMVVSPAEEDQPVEEIAQEQEKPT 192 + E A E I + + + A E + V P E V E P Sbjct: 1142 Q-AEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPE 1200 Query: 193 KE 194 Sbjct: 1201 NT 1202 Score = 50.1 bits (119), Expect = 2e-08 Identities = 38/200 (19%), Positives = 63/200 (31%), Gaps = 10/200 (5%) Query: 17 QKEQTPEKETEVQNEQPVVEEIVQEQEPVKASEQAVEEQPQAHTEAE-----AETFAADV 71 P E+ P + +E E Q E A A Sbjct: 1006 DVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQN 1065 Query: 72 VEVTEQVAESEKAQPEAEVVAQPEPVVEETPEPVAIEREELPLPEDVNAEAVSPEEWQAE 131 EV ++ + KA + VAQ +ET E + E E E E Sbjct: 1066 REVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVET----EKTQE 1121 Query: 132 AETVEIVEAAEEEAAKEEITDEEPEAQALAAEVAEEA-VMVVSPAEEDQPVEEIAQEQEK 190 V + ++E ++ EP + +E + A+ +QP +E + E+ Sbjct: 1122 VPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQ 1181 Query: 191 PTKEGFFARLKRSLLKTKEN 210 P E S+++ EN Sbjct: 1182 PVTESTTVNTGNSVVENPEN 1201 Score = 45.8 bits (108), Expect = 4e-07 Identities = 29/156 (18%), Positives = 47/156 (30%), Gaps = 14/156 (8%) Query: 17 QKEQTPEKETEVQNEQPVVEEIVQEQEPVKASE------QAVEEQPQAHTEAEAETFAAD 70 Q +T E T + E+ VE ++ P S+ Q+ QPQA E + Sbjct: 1096 QTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNI 1155 Query: 71 VVEVTEQVAESEKAQPEAEVVAQPEPVVEETPEPVAIEREELPLPEDVNAEAVSPEEWQA 130 ++ ++ QP E + E V E+ V + PE+ P Sbjct: 1156 KEPQSQTNTTADTEQPAKETSSNVEQPVTES-TTVNTGNSVVENPENTTPATTQPTVNSE 1214 Query: 131 EAETVEI-------VEAAEEEAAKEEITDEEPEAQA 159 + + E A D A Sbjct: 1215 SSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALC 1250 Score = 43.1 bits (101), Expect = 3e-06 Identities = 27/168 (16%), Positives = 58/168 (34%), Gaps = 17/168 (10%) Query: 2 AKEKKRGFFSWLGFGQKEQTPEKETEVQNEQPVVEEIVQEQEPVKASEQAVEEQPQAHTE 61 AKE K + + Q+ + E Q + V+++E K + +E P+ ++ Sbjct: 1069 AKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQ 1128 Query: 62 AEAETFAADVVEVTEQVAESEKAQPEAEVVAQPEPVV--EETPEPVAIEREELPLPEDVN 119 + +SE QP+AE + +P V +E + ++ + Sbjct: 1129 VSPKQ------------EQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETS 1176 Query: 120 AEAVSPEEWQAEAETVEIVEAAEEEAAKEEITDEEPEAQALAAEVAEE 167 + P E+ TV + E +P + ++ + Sbjct: 1177 SNVEQPVT---ESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKN 1221 Score = 32.7 bits (74), Expect = 0.004 Identities = 30/145 (20%), Positives = 51/145 (35%), Gaps = 10/145 (6%) Query: 52 VEEQPQAHTEAEAETFAADVVEVT-EQVAESEKAQPEAEVVAQPEPVVE-ETPEPVAIER 109 VE++ Q T +V E A+ + V P P ET E VA Sbjct: 985 VEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENS 1044 Query: 110 EELPLPEDVNAEAVSPEEWQAEAETVEIVEAAEEEAAKEEITDEEPEAQALAAEVAEEAV 169 ++ ++ V E A T + E A+E + + + E +E +E Sbjct: 1045 KQ-------ESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSE-TKETQ 1096 Query: 170 MVVSPAEEDQPVEEIAQEQEKPTKE 194 + EE A+ + + T+E Sbjct: 1097 TTETKETATVEKEEKAKVETEKTQE 1121
>PF01206#SirA family protein Length = 76 Score = 105 bits (265), Expect = 3e-34 Identities = 24/72 (33%), Positives = 41/72 (56%) Query: 9 DHTLDALGLRCPEPVMMVRKTVRNMQPGETLLIIADDPATTRDIPGFCTFMEHELVAKET 68 D +LDA GL CP P++ +KT+ M GE L ++A DP + +D F HEL+ ++ Sbjct: 5 DQSLDATGLNCPLPILKAKKTLATMNAGEVLYVMATDPGSVKDFESFSKQTGHELLEQKE 64 Query: 69 DGLPYRYLIRKG 80 + Y + +++ Sbjct: 65 EDGTYHFRLKRA 76
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 53.3 bits (128), Expect = 7e-10 Identities = 80/398 (20%), Positives = 147/398 (36%), Gaps = 32/398 (8%) Query: 13 LRLNLRIVSIVMFNFASYLTIGLPLAVLPGYVHDVM--GFSAFWAGLVISLQYFATLLSR 70 ++ N ++ I+ + IGL + VLPG + D++ G++++L Sbjct: 1 MKPNRPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACA 60 Query: 71 PHAGRYADLLGPKKIVVFGLCGCFMSGLGYLTAGLTASLPVISLLLLCLGRVILGI-GQS 129 P G +D G + +++ L G + + Y L V L +GR++ GI G + Sbjct: 61 PVLGALSDRFGRRPVLLVSLAG---AAVDYAIMATAPFLWV-----LYIGRIVAGITGAT 112 Query: 130 FAGTGSTLWGVGVVGSL--HIGRVISWNGIVTYGAMAMGAPLGVVFYHWGGLQALALIIM 187 A G+ + + H G + + G +G +G H A AL + Sbjct: 113 GAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGL 172 Query: 188 GVALVAILLAIPRPTVK--ASKGKPLPFRAVLGRVWLYGMALALA-----SAGFGVIATF 240 LL + + P + + +A +A V A Sbjct: 173 NFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAAL 232 Query: 241 ITLFYDAK-GWDGAAFALTLFSCAFVGT---RLLFPNGINRIGGLNVAMICFSVEIIGLL 296 +F + + WD ++L + + + ++ R+G M+ + G + Sbjct: 233 WVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYI 292 Query: 297 LVGVATMPWMAKIG-VLLAGAGFSLVFPALGVVAVKAVPQQNQGAALATYTVFMDLSLGV 355 L+ AT WMA VLLA G + PAL + + V ++ QG + L+ + Sbjct: 293 LLAFATRGWMAFPIMVLLASGGIGM--PALQAMLSRQVDEERQGQLQGSLAALTSLT-SI 349 Query: 356 TGPLAGLVMSWAGVPV----IYLAAAGLVAIALLLTWR 389 GPL + A + ++A A L + L R Sbjct: 350 VGPLLFTAIYAASITTWNGWAWIAGAALYLLCLPALRR 387
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 30.6 bits (69), Expect = 0.007 Identities = 10/34 (29%), Positives = 19/34 (55%) Query: 25 QAVLNNVSLALKSGETVALLGRSGCGKSTLARLL 58 Q + ++ +++ T+ + G SG GK +AR L Sbjct: 147 QEIYRVLARLMQTDLTLMITGESGTGKELVARAL 180
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 32.6 bits (74), Expect = 0.002 Identities = 42/210 (20%), Positives = 73/210 (34%), Gaps = 23/210 (10%) Query: 28 MVKRKKLFT--ALLALSWTFSVTAAE-----RIVVAGGSLTELIYAMGAGKRVVGVDETT 80 ++ R++L T AL L W + A RIV EL+ A+G GV +T Sbjct: 6 LISRRRLLTAMALSPLLWQMNTAHAAAIDPNRIVALEWLPVELLLALGIVP--YGVADTI 63 Query: 81 SY------PPETAKLPHIGYWKQLSSEGILSLRPDSVITWQDAGPQIVLDQL-RAQKVNV 133 +Y PP + +G + + E + ++P ++ GP + L R Sbjct: 64 NYRLWVSEPPLPDSVIDVGLRTEPNLELLTEMKPSFMVWSAGYGP--SPEMLARIAPGRG 121 Query: 134 VTLPRVPATLEQMYANIRQLAKTLQVPEQGEALVTQINQRLERVQQNVAAKKAPVKAMFI 193 L ++ ++A L + E + Q + ++ + A + Sbjct: 122 FNFSDGKQPLAMARKSLTEMADLLNLQSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTT 181 Query: 194 LSAGGSAPQ--VAGKGSVADAILSLAGAEN 221 L V G S+ IL G N Sbjct: 182 LI---DPRHMLVFGPNSLFQEILDEYGIPN 208
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.5 bits (63), Expect = 0.031 Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%) Query: 28 EIVAIL-GPNGAGKSTLLRQLTG 49 + +L G G GKSTL+ L G Sbjct: 596 DYSVVLEGTGGIGKSTLINTLVG 618
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 30.1 bits (67), Expect = 0.015 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 6/77 (7%) Query: 76 GGELYYQGQDLLKHDPQAQKLRRQKIQIVFQNPYGS---LNPRKKVGQILEEPLLINTSL 132 GGE+Y+ DL++H + Q L ++ N G R + E P LI Sbjct: 101 GGEIYFTDIDLVEHK-ELQDLSEEEKNS--MNSRGEKVPFASRFVFEKKRETPKLIINIK 157 Query: 133 SKVQRREKALSMMAKVG 149 E++ + ++G Sbjct: 158 DYAINSEQSKEVYYEIG 174
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 104 bits (260), Expect = 7e-28 Identities = 77/348 (22%), Positives = 127/348 (36%), Gaps = 67/348 (19%) Query: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKD--------------GTKFVNLVDLDI 47 +VTG AGFIG ++ K L + G ++ +DNL D +D+ Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAG-HQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 48 ADYMDKEDFLIQIMAGEEFGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSK-------EL 100 AD + + + A F E +F + +Y ++N + Y+ + Sbjct: 62 ADR----EGMTDLFASGHF---ERVFISPHRLAV-----RYSLENPHAYADSNLTGFLNI 109 Query: 101 LHYCLEREIP-FLYASSAATYGGRTSD-FIESREYEKPLNVYGYSKFLFDEYVRQILPEA 158 L C +I LYASS++ YG F + P+++Y +K + Sbjct: 110 LEGCRHNKIQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLY 169 Query: 159 NSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVA 218 G R+F VYGP + MA F + G+S ++ KRDF Y+ D+A Sbjct: 170 GLPATGLRFFTVYGPWG--RPDMA--LFKFTKAMLEGKSIDVY-NYGKMKRDFTYIDDIA 224 Query: 219 DVNL------------WFLENGVSG-------IFNLGTGRAESFQAVADATLAY-HKKGQ 258 + + W +E G ++N+G A + + Sbjct: 225 EAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAK 284 Query: 259 IEYIPFPDKLKGRYQAFTQADLTNLRAA-GYDKPFKTVAEGVTEYMAW 305 +P G T AD L G+ P TV +GV ++ W Sbjct: 285 KNMLPLQ---PGDVL-ETSADTKALYEVIGF-TPETTVKDGVKNFVNW 327
>PF08280#M protein trans-acting positive regulator Length = 530 Score = 34.1 bits (78), Expect = 0.001 Identities = 79/492 (16%), Positives = 165/492 (33%), Gaps = 75/492 (15%) Query: 7 RQNRLLRFLLPRREYTTIVTIAGYLNVSEKTIQRDLRLLEQWL-GQWRISVEKRAGAGVM 65 + +L+ + I +A ++ + L + ++++KR Sbjct: 45 SKCQLVVLFF-KTSSLPITEVAEKTGLTFLQLNHYCEELNAFFPDSLSMTIQKR------ 97 Query: 66 LSAENIADLLHLDHLLGAECEDV-DGVMNNARRVKIASQLLSETPNETSISKLSERYFIS 124 + E + ++ +++ + L+ + ++ + +F+S Sbjct: 98 ---------MISCQFTHPSKETYLYQLYASSNVLQLLAFLIKNGSHSRPLTDFARSHFLS 148 Query: 125 GASIVNDLRVIESWLAPLGLSLIRSPSGTHIEGSEGQVRQAMALLINGIINHNEPQGVVY 184 +S + L L L S I G E ++R +ALL G+ Sbjct: 149 NSSAYRMREALIPLLRNFELKL----SKNKIVGEEYRIRYLIALL-------YSKFGIKV 197 Query: 185 SRLDPGSYKALVHYFGEEEVLFVQSLLLDMENELSWSLGEPYYVNIFTHILIMMYRNTHG 244 L K ++H F L S L LS E + F IL+ + H Sbjct: 198 YDLTQQD-KNIIHSF-----LSHSSTHLKTSPWLS----ESFS---FYDILLALSWKRHQ 244 Query: 245 NALSREEDQTRQYDENIF---NVASQMIHKIEQRIAHTLPDDEVWFIYQ-YIISSGVAID 300 +++ + + Q + +F ++ IE ++ ++Y YI ++ Sbjct: 245 FSVTIPQTRIFQQLKKLFVYDSLKKSSRDIIETYCQLNFSAGDLDYLYLIYITANNSFAS 304 Query: 301 GQ---KDVSIISHMQASNEA-RLITWRLITVFSDIVD---------CDFSEDSALYDGLL 347 Q + + + N+ RL+ +IT+ ++ + FS+ S L++ L Sbjct: 305 LQWTPEHIRQCCQLFEENDTFRLLLNPIITLLPNLKEQKASLVKALMFFSK-SFLFN--L 361 Query: 348 VHIKPLINRLNYRIHIRNPLLEDIKAELADVWRLTQYVVNQVFKTWGKNAVSEDEVGYLT 407 H P N + N L + + W + K GK ++ Sbjct: 362 QHFIPETNLFVSPYYKGNQKLYTSLKLIVEEW---------MAKLPGKRYLNHKHFHLFC 412 Query: 408 VHFQAAMERQIARKRVLLVCSTGIGTSHLLKSRILRAFPEWTI---VDVISAANLSQVLP 464 + + + V+ V S I +HLL R F + +I + N+ Q+ Sbjct: 413 HYVEQILRNIQPPLVVVFVASNFI-NAHLLTDSFPRYFSDKSIDFHSYYLLQDNVYQIPD 471 Query: 465 DNIELIISTINL 476 +L+I+ L Sbjct: 472 LKPDLVITHSQL 483
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 37.9 bits (88), Expect = 5e-05 Identities = 33/208 (15%), Positives = 71/208 (34%), Gaps = 13/208 (6%) Query: 33 IIVEFLPVSLLTP----MAQDLGISEGVA---GQSVTVTAFVAMFASLFITQTIQATDRR 85 + ++ + + L+ P + +DL S V G + + A + + + RR Sbjct: 14 VALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRR 73 Query: 86 YVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKA 145 V+++ + +++ A +L IGR G+ G A++ + + + Sbjct: 74 PVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGIT-GATGAVAGAYIADITDGDERARH 132 Query: 146 LSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMG----VLCIFWIIKSLPSLPGE 201 + +V LG +G F AAA + + F + +S Sbjct: 133 FGFMSACFGFGMVAGPVLGGLMGG-FSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRP 191 Query: 202 PSHQKQNTFRLLQRPGVMAGMIAIFMSF 229 + N + M + A+ F Sbjct: 192 LRREALNPLASFRWARGMTVVAALMAVF 219
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 29.2 bits (65), Expect = 0.048 Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 10/80 (12%) Query: 367 LGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIAAGTT 426 LGD + D V + AG+ N G DV T G AT A T Sbjct: 616 LGDGD--DKVFLSAGSA--NIYAGK------GHDVVYYDKTDTGYLTIDGTKATEAGNYT 665 Query: 427 VTRNVGENALAISRVPQTQK 446 VTR +G + + V + Q+ Sbjct: 666 VTRVLGGDVKVLQEVVKEQE 685
>SECA#SecA protein signature. Length = 901 Score = 31.0 bits (70), Expect = 0.002 Identities = 11/71 (15%), Positives = 30/71 (42%) Query: 14 AKARRKTREELDQEARDRKRQKKRRGHAPGSRAAGGNTTSGSKGQNAPKDPRIGSKTPIP 73 +K + + EE+++ + R+ + +R ++ + + + ++G P P Sbjct: 827 SKVQVRMPEEVEELEQQRRMEAERLAQMQQLSHQDDDSAAAAALAAQTGERKVGRNDPCP 886 Query: 74 LGVAEKVTKQH 84 G +K + H Sbjct: 887 CGSGKKYKQCH 897
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 602 bits (1553), Expect = 0.0 Identities = 206/478 (43%), Positives = 299/478 (62%), Gaps = 11/478 (2%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M + V DDD++IR VL +AL+ AG N A + +A+ D++++D+ MP Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 + LL +IK+ P LPV++M+A + A+ A ++GA+DYLPKPFD+ E + ++ RA++ Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 121 HYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 + + ++G + AMQ+++R++ RL ++ ++++I GESGTGKELVA A Sbjct: 121 EPKRRPSKLEDDSQDGM-PLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARA 179 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 LH + R PF+A+NMAAIP+DLIESELFGHEKGAFTGA T GRFEQA+GGTLFLDE Sbjct: 180 LHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDE 239 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 IGDMP+D QTRLLRVL G++ VGG P++ DVRI+AAT+++L+Q + +G FREDL++R Sbjct: 240 IGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYR 299 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 LNV+ + LPPLR+R EDIP L RHF+Q A +E G++ K E + WPGNVR+L Sbjct: 300 LNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKE-GLDVKRFDQEALELMKAHPWPGNVREL 358 Query: 361 ENTCRWLTVMAAGQEVLIQDLPGELFESNVPESTSHMQPDSWATLLAQWADRALRS---- 416 EN R LT + + + + EL S + ++Q + +R Sbjct: 359 ENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFAS 418 Query: 417 -----GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 L E+E L+ AL T+G++ +AA LLG RNTL +K++ELG+ Sbjct: 419 FGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGVS 476
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 180 bits (458), Expect = 4e-51 Identities = 97/445 (21%), Positives = 170/445 (38%), Gaps = 81/445 (18%) Query: 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQE--RVMDSNDLEKERGITILAKNT 61 K+ NI ++AHVD GKTTL + LL SG + D+ LE++RGITI T Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 62 AIKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGL 121 + +W + ++NI+DTPGH DF EV R +S++D +L++ A DG QTR + G+ Sbjct: 62 SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGI 121 Query: 122 KPIVVINKVDRPGARPDWVVDQVFD-------------LFVNLDATDEQLD--------- 159 I INK+D+ G V + + L+ N+ T+ Sbjct: 122 PTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEG 181 Query: 160 --------------------------------FPIVYASALNGIAGLDHEDMAEDMTPLY 187 FP+ + SA N I G+D+ L Sbjct: 182 NDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNI-GIDN---------LI 231 Query: 188 QAIVDHVPAPDVDLDGPFQMQISQLDYNSYVGVIGIGRIKRGKVKPNQQVTIIDSEGKTR 247 + I + + ++ +++Y+ + R+ G + V I + E Sbjct: 232 EVITNKFYSSTHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKI-- 289 Query: 248 NAKVGKVLGHLGLERIETDLAEAGDIVAITGLGELNISDTVCDTQNVEALPALSVDEPTV 307 K+ ++ + E + D A +G+IV + L ++ + DT+ + + P + Sbjct: 290 --KITEMYTSINGELCKIDKAYSGEIVILQNEF-LKLNSVLGDTKLLPQRERIENPLPLL 346 Query: 308 SMFFCVNTSPFCGKEGKFVTSRQILDRLNKELVHNVALRVEETEDADAFRVSGRGELHLS 367 + + D L LR +S G++ + Sbjct: 347 QTTVEPSKPQQREMLLDALLEISDSDPL---------LRYYVDSATHEIILSFLGKVQME 397 Query: 368 VLIENMRRE-GFELAVSRPKVIFRE 391 V ++ + E+ + P VI+ E Sbjct: 398 VTCALLQEKYHVEIEIKEPTVIYME 422 Score = 32.5 bits (74), Expect = 0.005 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 1/75 (1%) Query: 398 EPYENVTLDVEEQHQGSVMQALGERKGDLKNMNPDGKGRVRLDYVIPSRGLIGFRSEFMT 457 EPY + + +++ + ++ + V L IP+R + +RS+ Sbjct: 537 EPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQLKN-NEVILSGEIPARCIQEYRSDLTF 595 Query: 458 MTSGTGLLYSTFSHY 472 T+G + + Y Sbjct: 596 FTNGRSVCLTELKGY 610
>SSPANPROTEIN#Salmonella invasion protein InvJ signature. Length = 336 Score = 26.6 bits (58), Expect = 0.016 Identities = 11/27 (40%), Positives = 14/27 (51%) Query: 7 RKDRDRNGKAKPHKHSGIPTLTGKWRH 33 +KDRD HK + +P L WRH Sbjct: 43 KKDRDYGDAFVMHKETALPLLLAAWRH 69
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 26.7 bits (59), Expect = 0.020 Identities = 5/33 (15%), Positives = 13/33 (39%), Gaps = 1/33 (3%) Query: 17 ELVEKR-QRFATILSIIMLAVYIGFILLIAFAP 48 EL+E R +++ ++ + +L Sbjct: 47 ELIETPVSRRPRLVAYFIMGFLVIAFILSVLGQ 79
>VACJLIPOPROT#VacJ lipoprotein signature. Length = 251 Score = 29.9 bits (67), Expect = 0.006 Identities = 6/21 (28%), Positives = 11/21 (52%) Query: 179 FGNLDDPNSEISQLLRQKPTY 199 GNL++P ++ L+ P Sbjct: 75 TGNLEEPAVMVNYFLQGDPYQ 95
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 32.6 bits (74), Expect = 3e-04 Identities = 20/84 (23%), Positives = 32/84 (38%), Gaps = 5/84 (5%) Query: 50 HLALLDGEVVGMIGLHLQFHLHHVNWIGEIQELVVMPQARGLNVGSKLLAWAEEEARQAG 109 L L+ +G I + + N I+++ V R VG+ LL A E A++ Sbjct: 68 FLYYLENNCIGRIKIRSNW-----NGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENH 122 Query: 110 AEMTELSTNVKRHDAHRFYLREGY 133 L T A FY + + Sbjct: 123 FCGLMLETQDINISACHFYAKHHF 146
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.3 bits (65), Expect = 0.013 Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 8/70 (11%) Query: 36 CVVLHGHSGSGKSTLLRSLYANYLPDEGQIQIKHGDEWVDLVTAPARKVVEI------RK 89 VVL G G GKSTL+ +L + I G + + + E+ R+ Sbjct: 598 SVVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTGKDSYEQIAGIV--AYELSEMTAFRR 655 Query: 90 TTVGWVSQFL 99 V F Sbjct: 656 ADAEAVKAFF 665
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 70.2 bits (172), Expect = 4e-16 Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 4/109 (3%) Query: 4 VLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKEN 63 +L+ DDDA + + + +++ G+ S I + DL++ D+ M EN Sbjct: 6 ILVADDDAAIRTVLNQALSRA-GYDVR-ITSNAATLWRWI--AAGDGDLVVTDVVMPDEN 61 Query: 64 GLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASR 112 DLLP + AR V+V+S+ T + G DYL KPF + Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTE 110
>PF06580#Sensor histidine kinase Length = 349 Score = 41.0 bits (96), Expect = 7e-06 Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 18/99 (18%) Query: 442 LIENALE-ALGP-EPGGEISVTLHYRHGWLHCEVNDDGPGIAPDKIDHIFDKGVSTKGSE 499 L+EN ++ + GG+I + +G + EV + G + Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKN------------TKES 310 Query: 500 RGVGLALVKQQVENLGG---SIAVESEPGIFTQFFVQIP 535 G GL V+++++ L G I + + G V IP Sbjct: 311 TGTGLQNVRERLQMLYGTEAQIKLSEKQGKVN-AMVLIP 348
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 26.4 bits (58), Expect = 0.012 Identities = 9/28 (32%), Positives = 16/28 (57%) Query: 32 LAIIEHTDVDESLKGQGIGKQLVAKVVE 59 A+IE V + + +G+G L+ K +E Sbjct: 89 YALIEDIAVAKDYRKKGVGTALLHKAIE 116
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 665 bits (1716), Expect = 0.0 Identities = 314/882 (35%), Positives = 467/882 (52%), Gaps = 63/882 (7%) Query: 4 LLKKSLLLVRIALLCPAFSWGAASPVPGHNNELSFNPDFLELSDGNNAKNIDLSYFMNAS 63 + + VR+ + C A+ P + EL FNP FL DLS F N Sbjct: 20 KHRLAGFFVRLFVAC-----AFAAQAPLSSAELYFNPRFLADDPQ---AVADLSRFENGQ 71 Query: 64 GAAPGEYTVDVIMNGKIVDSQIKIDFTEQDNELTAR--LTPQQLERWGIDTNKLSVSSPS 121 PG Y VD+ +N + ++ + F D+E LT QL G++T +S + Sbjct: 72 ELPPGTYRVDIYLNNGYMATR-DVTFNTGDSEQGIVPCLTRAQLASMGLNTASVSGMNLL 130 Query: 122 AYQQ--NIAYIIQGATEKFDANNQKLILNIPQSYLKPQDWLSTPPHLWDEGMPALMVNYL 179 A + +I AT + D Q+L L IPQ+++ + PP LWD G+ A ++NY Sbjct: 131 ADDACVPLTSMIHDATAQLDVGQQRLNLTIPQAFMSNRARGYIPPELWDPGINAGLLNYN 190 Query: 180 FNGIK-QNNNGYGSRSQFLSLDSSLNLGGWRLRHNGNWSTNSYNKES----HWQPVSVYL 234 F+G QN G S +L+L S LN+G WRLR N WS NS + S WQ ++ +L Sbjct: 191 FSGNSVQNRIGGNSHYAYLNLQSGLNIGAWRLRDNTTWSYNSSDSSSGSKNKWQHINTWL 250 Query: 235 QHDYSFLQGGQFTVGQTSTDGAIFDSFPFEGAQFSSDDGMIAPELSQYSPVVRGIAYSQA 294 + D L+ + T+G T G IFD F GAQ +SDD M+ ++PV+ GIA A Sbjct: 251 ERDIIPLRS-RLTLGDGYTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPVIHGIARGTA 309 Query: 295 QVSVKQNGVVIYQKNVPPGPFELRDFNQI-FTGDLEVEIREADGTIRHFTQATAVLPILQ 353 QV++KQNG IY VPPGPF + D +GDL+V I+EADG+ + FT + +P+LQ Sbjct: 310 QVTIKQNGYDIYNSTVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQ 369 Query: 354 RQGRLRYNLAFGKYRSSSTLNNSVSEPQFVQSSAAIGLPDEYTFYGGGIKADNYAAVLLG 413 R+G RY++ G+YRS N +P+F QS+ GLP +T YGG AD Y A G Sbjct: 370 REGHTRYSITAGEYRSG---NAQQEKPRFFQSTLLHGLPAGWTIYGGTQLADRYRAFNFG 426 Query: 414 LGKYSDFFGAFSLDVTHARSQFSQNYKSFGKQQGQSYRFMYSRGFGETNTTLNITGYRYA 473 +GK GA S+D+T A S + + GQS RF+Y++ E+ T + + GYRY+ Sbjct: 427 IGKNMGALGALSVDMTQANSTLPDD----SQHDGQSVRFLYNKSLNESGTNIQLVGYRYS 482 Query: 474 TRGYYDF----------------DELQQIQSGFVDEKNINSYHQRSRISTTISQDLQDWG 517 T GY++F D + Q++ F D N+ +Y++R ++ T++Q L Sbjct: 483 TSGYFNFADTTYSRMNGYNIETQDGVIQVKPKFTDYYNL-AYNKRGKLQLTVTQQLGRTS 541 Query: 518 QFYLSASKDQYWDTADGY-NLSASYSLPFRYISAMLSLGYNKSPYYHEADKSLFLSVSVP 576 YLS S YW T++ A + F I+ LS K+ + D+ L L+V++P Sbjct: 542 TLYLSGSHQTYWGTSNVDEQFQAGLNTAFEDINWTLSYSLTKNAWQKGRDQMLALNVNIP 601 Query: 577 LNSLLNGNNLFLTTNTI-------TNNGQVQQQVGLNGSS-QDGEFNYAVAQGWQNQNRG 628 + L ++ + NG++ G+ G+ +D +Y+V G+ G Sbjct: 602 FSHWLRSDSKSQWRHASASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGDG 661 Query: 629 ESGN---INLNYRGPYAQMNGGYAWQKESSQWTYGISGGITLHPHGLTLSQPLSLDSASA 685 SG+ LNYRG Y N GY+ + Q YG+SGG+ H +G+TL QP L+ Sbjct: 662 NSGSTGYATLNYRGGYGNANIGYSHSDDIKQLYYGVSGGVLAHANGVTLGQP--LNDTVV 719 Query: 686 LVQARDAASVKVLNGSGIYTDWRGYAVVPYLNPYNRNQISLDVNSVKDNVELLNTDVTVI 745 LV+A A KV N +G+ TDWRGYAV+PY Y N+++LD N++ DNV+L N V+ Sbjct: 720 LVKAPGAKDAKVENQTGVRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVV 779 Query: 746 PSRGALVSAPFKVNVGNKAIITLIQKNGEPVPFGSVVTLDSENSINSSIVADQGQVYMSG 805 P+RGA+V A FK VG K ++TL N +P+PFG++VT +S S IVAD GQVY+SG Sbjct: 780 PTRGAIVRAEFKARVGIKLLMTL-THNNKPLPFGAMVTSESSQSS--GIVADNGQVYLSG 836 Query: 806 LPEEDTLIAQWGEEASQKCKTNYKL--QNKTAKFSELTLQCQ 845 +P + +WGEE + C NY+L +++ ++L+ +C+ Sbjct: 837 MPLAGKVQVKWGEEENAHCVANYQLPPESQQQLLTQLSAECR 878
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 441 bits (1136), Expect = e-134 Identities = 261/991 (26%), Positives = 416/991 (41%), Gaps = 144/991 (14%) Query: 58 ASVVSSTTSYQTYRDFAENKGEFRPGAEDVPLYDKNGNPVMTL--NKAPMIDFSSNDST- 114 A++V YQ +RDFAENKG+F GA +V + DKN + T N PMIDFS D Sbjct: 25 AALVRDDVDYQIFRDFAENKGKFSVGATNVLVKDKNNKDLGTALPNGIPMIDFSVVDVDK 84 Query: 115 GVATLVSPQYVVSVKH-NGGYQYVKFGYADDSS-----------------YALVDRNNH- 155 +ATL++PQYVV VKH + G + FG + + Y V++N + Sbjct: 85 RIATLINPQYVVGVKHVSNGVSELHFGNLNGNMNNGNAKAHRDVSSEENRYFSVEKNEYP 144 Query: 156 -----------------WRDFHTPRLNKIVTEVTPLDITNAGTAKGTYQNADRFPVFYRV 198 D++ PRL+K VTEV P++ + A + GTY + +++P F R+ Sbjct: 145 TKLNGKTVTTEDQTQKRREDYYMPRLDKFVTEVAPIEASTASSDAGTYNDQNKYPAFVRL 204 Query: 199 GTGTQYVKDTNGKITYLM--------------GAYSYKTGG-IVNTPAISDWSFVTNTTN 243 G+G+Q++ + ++ AY+Y G ++ + Sbjct: 205 GSGSQFIYKKGDNYSLILNNHEVGGNNLKLVGDAYTYGIAGTPYKVNHENNGLIGFGNSK 264 Query: 244 ------------TPLSTYGTPGDSGSPLFAWDADQNKWVLLAVLNSYAGVNGNT-NWYTI 290 PL+ Y GDSGSPLF +D ++ KW+ L + +AG N + + I Sbjct: 265 EEHSDPKGILSQDPLTNYAVLGDSGSPLFVYDREKGKWLFLGSYDFWAGYNKKSWQEWNI 324 Query: 291 IPAGDVKNTMKQDADAPVNTKQGEGDIHWSYDEKTGLGSLTQGSTSWEMHGNLGATWPAS 350 + K+ + +D+ + + + +S+ ++T G S + G P Sbjct: 325 YKSQFTKDVLNKDSAGSLIGSKTD----YSWSSNGKTSTITGGEKSLNVDLADGKDKP-- 378 Query: 351 LNSGKDLTFQGGGTVVLENTVNQGAGTLTFDDDYIVKPV-DTQTWKGGGIIVNGEHLVDW 409 N GK +TF+G GT+ L N ++QGAG L F+ DY VK D TWKG G+ V V W Sbjct: 379 -NHGKSVTFEGSGTLTLNNNIDQGAGGLFFEGDYEVKGTSDNTTWKGAGVSVAEGKTVTW 437 Query: 410 QINGVTGDSLHKLGTGTLKINGTGVNPGSLSVGDGTVILAQRADDNGLSQAFSSVSIVSG 469 +++ D L K+G GTL + GTG N GSL VGDGTVIL Q+ + +G AF+SV IVSG Sbjct: 438 KVHNPQYDRLAKIGKGTLIVEGTGDNKGSLKVGDGTVILKQQTNGSG-QHAFASVGIVSG 496 Query: 470 RPTLVLNDDKQINPDNIKWGYHGGKLDINGNSLTFHKLNGADDGAILTNSGS--MANVNL 527 R TLVLNDDKQ++P++I +G+ GG+LD+NGNSLTF + DDGA L N +N+ + Sbjct: 497 RSTLVLNDDKQVDPNSIYFGFRGGRLDLNGNSLTFDHIRNIDDGARLVNHNMTNASNITI 556 Query: 528 DFNSPDT---TATVANIWHGHFTGNLNINNEVTAGT-------QNDFAIDGGVNTQGSIT 577 S T T T NI G +A+ G +T+ + Sbjct: 557 TGESLITDPNTITPYNIDAPDEDNPYAFRRIKDGGQLYLNLENYTYYALRKGASTRSELP 616 Query: 578 QQNGR----LFMQGHPVVHAVSSQDVANKLKALGDNSVLTQPVSFTQNDWENRQFSMAEL 633 + +G G A + + + + N N F Sbjct: 617 KNSGESNENWLYMGKTSDEAKRNVMNHINNERMNGFNGYFGEEEGKNNGNLNVTFK--GK 674 Query: 634 NLQNAEFNLARNASLNTRINAEHSTVTLGSEDLYIDLNDGNGVATKPT-LGKSKATAEDD 692 + QN F L +LN + E T+ L S D G+++ ++ Sbjct: 675 SEQNR-FLLTGGTNLNGDLTVEKGTLFL-SGRPTPHARDIAGISSTKKDPHFAENNEVVV 732 Query: 693 QSRFNGHVQLQQGSALTINEHFAGGIDSADSATTITSTDTTLNQLSRFTQSSLSLGEGAK 752 + + +T N G + A+ + IT+++ Sbjct: 733 EDDWINRNFKATTMNVTGNASLYSGRNVANITSNITASNK-------------------- 772 Query: 753 LTATAGLLSDGTVSSNAGASLSLLSDQPGTMYSAQSWELSGQDTSLNVGAGGIITGDINA 812 + + G ++ + SD G + D +LN + G++N Sbjct: 773 --------AQVHIGYKTGDTVCVRSDYTGYVTCTTD---KLSDKALNSFNPTNLRGNVNL 821 Query: 813 NDAASISFGTTDINQSTNYYGNINAPLASVTMKDTAWQVNKQSVAKSLTLNGSTLSFNRF 872 ++A+ G ++ + GN L ++ W + S L L + N Sbjct: 822 TESANFVLGKANLFGTIQSRGNSQVRLTE----NSHWHLTGNSDVHQLDLANGHIHLNSA 877 Query: 873 GQGG-------LTSDTLEATNS-SFIINADGKAADTVTVNQALTGGNNTLVVIPTTNSVK 924 LT ++L S ++ + K D V V ++ T GN TL V T Sbjct: 878 DNSNNVTKYNTLTVNSLSGNGSFYYLTDLSNKQGDKVVVTKSAT-GNFTLQVADKTGEPN 936 Query: 925 QGGDPVSLVTAPKNTQSNI-FTLNPVSINAG 954 ++L A K + ++ +L +++ G Sbjct: 937 HNE--LTLFDASKAQRDHLNVSLVGNTVDLG 965
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 332 bits (853), Expect = 4e-96 Identities = 219/1015 (21%), Positives = 360/1015 (35%), Gaps = 215/1015 (21%) Query: 38 FIVSALSYGAAEYACAAQMDTRNFWIRDYLDLAQNKGAFQPGAYGVKTPLKNGGEF--SF 95 FI ++Y Y A + + + + D A+NKG F GA V KN + + Sbjct: 10 FIALTVAYALTPYT-EAALVRDDVDYQIFRDFAENKGKFSVGATNVLVKDKNNKDLGTAL 68 Query: 96 PE-VTIPDFSPVSA-KGATTAIGNAYSVTASH--------------------NGTIHHAI 133 P + + DFS V K T I Y V H N H + Sbjct: 69 PNGIPMIDFSVVDVDKRIATLINPQYVVGVKHVSNGVSELHFGNLNGNMNNGNAKAHRDV 128 Query: 134 KTQTWG---QSDYHYVDRVTKG-------------DFAVQRLDKFVVETAGATEHADFNL 177 ++ Y ++ D+ + RLDKFV E A + + Sbjct: 129 SSEENRYFSVEKNEYPTKLNGKTVTTEDQTQKRREDYYMPRLDKFVTEVAPI----EAST 184 Query: 178 SAAEALERYGIEFNGKKQIIGFRVGAGATGVTSYG-------------------VGQAYN 218 ++++A G + K R+G+G+ + G VG AY Sbjct: 185 ASSDA----GTYNDQNKYPAFVRLGSGSQFIYKKGDNYSLILNNHEVGGNNLKLVGDAYT 240 Query: 219 PLLRSASMFQLNWNN---------------MLATNNTGGFYNEVTGGDSGSGFYLYDNQR 263 + + + +++N N + N GDSGS ++YD ++ Sbjct: 241 YGI-AGTPYKVNHENNGLIGFGNSKEEHSDPKGILSQDPLTNYAVLGDSGSPLFVYDREK 299 Query: 264 KKWVILGTTYGKAFSSKDTWAFFSRYDQNTVDTLKNTFTQEV----------NLNGQKMT 313 KW+ LG+ A +K +W ++ Y + N + + NG+ T Sbjct: 300 GKWLFLGSYDFWAGYNKKSWQEWNIYKSQFTKDVLNKDSAGSLIGSKTDYSWSSNGKTST 359 Query: 314 VNNKNIAINDKITAIELTKSNKNKDLKFHGGGSIELTDNLNSGTGGLIFDEGQHYSVIGK 373 + ++N + + K N K + F G G++ L +N++ G GGL F+ Sbjct: 360 ITGGEKSLNVDLADGK-DKPNHGKSVTFEGSGTLTLNNNIDQGAGGLFFEGDYEVKGTSD 418 Query: 374 DKAYKGAGVEIGKDTVVDWSVKGEANDNLHKTGAGTLNVNVAQGN--NLKTGDGTVFLN- 430 + +KGAGV + + V W V D L K G GTL V N +LK GDGTV L Sbjct: 419 NTTWKGAGVSVAEGKTVTWKVHNPQYDRLAKIGKGTLIVEGTGDNKGSLKVGDGTVILKQ 478 Query: 431 -----AEKAFNAIYVASGRGTVKLGQADALDKNSDYRGIYFTSRGGTLDLNGFSQSFKKI 485 + AF ++ + SGR T+ L +D NS IYF RGG LDLNG S +F I Sbjct: 479 QTNGSGQHAFASVGIVSGRSTLVLNDDKQVDPNS----IYFGFRGGRLDLNGNSLTFDHI 534 Query: 486 AATDVGTIITNT-SDKTATLSLQNPSRYVYHGSITGNTNIEHTGTQKSADSSLIIDGNIN 544 D G + N + + +ITG + I T + + N Sbjct: 535 RNIDDGARLVNHNMTNASNI------------TITGESLITDPNTITPYNIDAPDEDNPY 582 Query: 545 TRNDITVRNSQLRLQGHATSHAIFREGPR-HCYVPGVLCDKDYVTDFARLESEANKKNNS 603 I QL L ++ R+G +P + + + S+ K+N Sbjct: 583 AFRRIK-DGGQLYLNLENYTYYALRKGASTRSELPKNSGESNENWLYMGKTSDEAKRNVM 641 Query: 604 AYKTNNQVASFDQP---------DWETRHFRFKTLNLENSEFTTARNSVVEGDIVASNST 654 + N ++ F+ F+ K+ E + F + + GD+ T Sbjct: 642 NHINNERMNGFNGYFGEEEGKNNGNLNVTFKGKS---EQNRFLLTGGTNLNGDLTVEKGT 698 Query: 655 LKLGGDVPVFIDMYDGINITGNGFGFRQDVREGRSADDGSSSYTGKITLQKGSTLDINNR 714 L L G GI+ T F ++ + + + + N Sbjct: 699 LFLSGRPTPHARDIAGISSTKKDPHFAEN-----NEVVVEDDWINRNFKATTMNVTGNAS 753 Query: 715 FIGGIEAHDSKVNVTSPDALLQNSGVFVNSTLSVRDGGHLTAQKGLYSDGRVQIGKNGTL 774 G + N+T+ + + G T+ VR + T Sbjct: 754 LYSGRNVANITSNITASNKAQVHIGYKTGDTVCVRS--------------------DYTG 793 Query: 775 SLSGTPENGADNTWMPVLTYMTEGYDLTGDNATLNISQQAHVSGDVHATSSSSIRIGSEN 834 ++ T + +D LN ++ G+V+ T S++ +G Sbjct: 794 YVTCTTDKLSDK--------------------ALNSFNPTNLRGNVNLTESANFVLG--- 830 Query: 835 PGSVSSSVSPVLAAGLFSGYNAAYYGAITGGKGNVSMN---NGLWQLTGDSDINSLTTRN 891 A +G I +GN + N W LTG+SD++ L N Sbjct: 831 --------------------KANLFGTI-QSRGNSQVRLTENSHWHLTGNSDVHQLDLAN 869 Query: 892 SRV----QSEENGA--FRTLTVKTLDATGSDFVLRTDLKD--ADKISITEKASGS 938 + N + TLTV +L GS + L TDL + DK+ +T+ A+G+ Sbjct: 870 GHIHLNSADNSNNVTKYNTLTVNSLSGNGSFYYL-TDLSNKQGDKVVVTKSATGN 923
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 25.7 bits (56), Expect = 0.024 Identities = 9/28 (32%), Positives = 16/28 (57%) Query: 32 LAIIEHTDVDESLKGQGIGKQLVAKFVE 59 A+IE V + + +G+G L+ K +E Sbjct: 89 YALIEDIAVAKDYRKKGVGTALLHKAIE 116
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 29.8 bits (67), Expect = 0.028 Identities = 36/190 (18%), Positives = 66/190 (34%), Gaps = 14/190 (7%) Query: 44 NHAISLFSAYA-SLVYVTPILGGWLADRLLGNRTAVIAGALLMTLGHVVLGIDTNSTFSL 102 H L + YA P+LG +DR G R ++ + + ++ + L Sbjct: 43 AHYGILLALYALMQFACAPVLGAL-SDRF-GRRPVLLVSLAGAAVDYAIMAT-APFLWVL 99 Query: 103 YLALAIIICGYGLFKSNISCLLGELYDEND-HRRDGGFSLLYAAGNIGSIAAPIACGLAA 161 Y+ + G+ + + + D D R F + A G +A P+ GL Sbjct: 100 YIGRIV----AGITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMG 155 Query: 162 QWYGWHVGFALAGGGMFIGLLIFLSGHRHFQSTRSMDKKALTSVKF-ALPVWSWLVVMLC 220 + H F A + L FL+G + +++ L L + W M Sbjct: 156 G-FSPHAPFFAAA---ALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTV 211 Query: 221 LAPVFFTLLL 230 +A + + Sbjct: 212 VAALMAVFFI 221
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 36.4 bits (84), Expect = 8e-05 Identities = 16/97 (16%), Positives = 36/97 (37%), Gaps = 7/97 (7%) Query: 391 PLDEKQLAALNTEIDNIVTLPELNNLS-----IIYQIKAVSALVKGKTDESYQAINTGID 445 ++ A+ + + T+ LN +S +Y + A + GK +++++ Sbjct: 6 TDTQEYQLAMESFLKGGGTIAMLNEISSDTLEQLYSL-AFNQYQSGKYEDAHKVFQALCV 64 Query: 446 LEMSWLNYVL-LGKVYEMKGMNREAADAYLTAFNLRP 481 L+ + L LG + G A +Y + Sbjct: 65 LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDI 101
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 44.6 bits (105), Expect = 5e-08 Identities = 28/188 (14%), Positives = 51/188 (27%), Gaps = 13/188 (6%) Query: 3 REDVLGEALKLLELQGIANTTLEMVAERVDYPLDELRRFWPDKEAILYDALRYLSQQIDV 62 R+ +L AL+L QG+++T+L +A+ + + DK + + I Sbjct: 13 RQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGE 72 Query: 63 WRRQLMLDETQTAEQKLLARYQALSECVKNNRYPGCLFIAACTFYPDPGH----PIHQLA 118 + L + E + F+ + Q Sbjct: 73 LELEYQAKFPGDPLSVLREILIHVLEST--VTEERRRLLMEIIFHKCEFVGEMAVVQQAQ 130 Query: 119 DQQKSAAYDFTHELLTT-------LEVDDPAMVAKQMELVLEGCLSRMLVNRSQADVDTA 171 +YD + L A M + G + L D+ Sbjct: 131 RNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQSFDLKKE 190 Query: 172 HRLAEDIL 179 R IL Sbjct: 191 ARDYVAIL 198
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 52.0 bits (124), Expect = 1e-08 Identities = 50/312 (16%), Positives = 105/312 (33%), Gaps = 18/312 (5%) Query: 121 SRQAQQEQERAREIADSLNQLPQQQTDARRQLNEIERRLGTLTGNTPLNQAQNFALQSDS 180 + ++ QERA + N L + +D ++ LT L+ + Sbjct: 49 TDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTE---ELSNAKEKLRKND 105 Query: 181 ARLKALVDEL-ELAQLSANNRQELARLRSELAEKES--QQLDAYLQALRNQLNSQRQLEA 237 L ++ EL A+ + L + + + L+A AL + + + Sbjct: 106 KSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAAR-KADLEKAL 164 Query: 238 ERALESTEQLAESSADLPKDIVAQFKINRELSAALNQQAQRMDLVASQQRQAASQTLQVR 297 E A+ + + L + A EL AL +++ + ++ + Sbjct: 165 EGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALA 224 Query: 298 QALNTLREQSQWLGSSNLLGEALRAQVARLPEMPKPQQLDTEMAQLRVQRLRYEDLLNKQ 357 L + L + A A++ L + L+ A+L + Sbjct: 225 ARKADLEKA---LEGAMNFSTADSAKIKTLEA--EKAALEARQAELEKALEGAMNFSTAD 279 Query: 358 PLLRQIHQADGQPLTAE------QNRILEAQLRTQRELLNSLLQGGDTLLLELTKLKVSN 411 + +A+ L AE Q+++L A ++ R L++ + L E KL+ N Sbjct: 280 SAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQN 339 Query: 412 GQLEDALKEVNE 423 E + + + Sbjct: 340 KISEASRQSLRR 351 Score = 41.2 bits (96), Expect = 2e-05 Identities = 51/257 (19%), Positives = 94/257 (36%), Gaps = 59/257 (22%) Query: 20 ATAPDSKQITQELEQAKAAKPAQPEVVEALQSALNALEERKGSLERIKQYQEVIDNYPKL 79 A A + + LE A A ++ L++ ALE R+ LE+ + Sbjct: 222 ALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAM------NF 275 Query: 80 SATLRAQLNNMRDEPRSVSPGMSNDALNQEILQISS--QLLDKSRQAQQEQERAREIADS 137 S A++ + E AL E + Q+L+ +RQ+ + A Sbjct: 276 STADSAKIKTLEAE---------KAALEAEKADLEHQSQVLNANRQSLRRDLDA------ 320 Query: 138 LNQLPQQQTDARRQLNEIERRLGTLTGNTPLNQAQNFALQSDSARLKALVDELELAQLSA 197 +R ++E L N+ + QS L A Sbjct: 321 ----------SREAKKQLEAEHQKL---EEQNKISEASRQSLRRDLDAS----------- 356 Query: 198 NNRQELARLRSEL--AEKESQQLDAYLQALRNQLNSQRQLEAERALESTEQLAESSADLP 255 R+ +L +E E++++ +A Q+LR R L+A R E+ +Q+ ++ + Sbjct: 357 --REAKKQLEAEHQKLEEQNKISEASRQSLR------RDLDASR--EAKKQVEKALEEAN 406 Query: 256 KDIVAQFKINRELSAAL 272 + A K+N+EL + Sbjct: 407 SKLAALEKLNKELEESK 423
>SECA#SecA protein signature. Length = 901 Score = 31.8 bits (72), Expect = 0.005 Identities = 26/144 (18%), Positives = 54/144 (37%), Gaps = 6/144 (4%) Query: 282 HVIDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEPRIDRDEENK-PIRV 340 ++D +DV N + IDA+ P L ++ + + R+ D + PI Sbjct: 665 ELLDVSDVSETINSIREDVFKATIDAYIPPQSL--EEMWDIPGLQERLKNDFDLDLPIAE 722 Query: 341 WLSAQTGAGIPQLFQALTERLSGEVAQHTLRLPPQEGRLRSRFYQLQAIEKEWMEEDGSV 400 WL + L + + + + + + R + LQ ++ W E ++ Sbjct: 723 WLDKEPELHEETLRERILAQSIEVYQRKEEVVGAEMMRHFEKGVMLQTLDSLWKEHLAAM 782 Query: 401 SLQVRMPIVDWRRLCKQEPALIDY 424 +R I R +++P +Y Sbjct: 783 D-YLRQGIH-LRGYAQKDP-KQEY 803
>cloacin#Cloacin signature. Length = 551 Score = 31.6 bits (71), Expect = 0.006 Identities = 25/81 (30%), Positives = 30/81 (37%), Gaps = 10/81 (12%) Query: 17 GSSKPGGNSEGNGNKGGRDQGPPDLDDIFRKLSKKLGGLGGGKGTGSGGGSSSQGP---- 72 S G +SE N GG G G GGG GTG G S+ P Sbjct: 33 ASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTG-GNLSAVAAPVAFG 91 Query: 73 -----RPQLGGRVVTIAAAAI 88 P GG V+I+A A+ Sbjct: 92 FPALSTPGAGGLAVSISAGAL 112
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 30.6 bits (69), Expect = 0.028 Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 1/55 (1%) Query: 165 VVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAV-GKIVEVLGDNM 218 +VP+D L L+ I +G ++++ P R + GK+ + D + Sbjct: 359 IVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAI 413
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 29.8 bits (67), Expect = 0.010 Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 7/75 (9%) Query: 74 GSEVFITATLREVDE-LMTVEPEIIALDATARPRPGGQTLEELVTQIRARYPS--VLLMA 130 G +V IT+ + + + +++ D + +L+ +I+ P VL+M+ Sbjct: 27 GYDVRITSNAATLWRWIAAGDGDLVVTDV----VMPDENAFDLLPRIKKARPDLPVLVMS 82 Query: 131 DIATVEEAVTAERLG 145 T A+ A G Sbjct: 83 AQNTFMTAIKASEKG 97
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 30.0 bits (67), Expect = 0.016 Identities = 47/242 (19%), Positives = 80/242 (33%), Gaps = 24/242 (9%) Query: 63 VALSLAAVTSLPALAAD----TVVQAGETVNGGTLENHDNQIVFGTANGMTISTG----- 113 +A++L A+ + PA AD ++V+ GE +G ++ D V TA+G TI Sbjct: 19 LAMALGALGAAPAAHADWNNQSIVKTGERQHGIHIQGSDPGGV-RTASGTTIKVSGRQAQ 77 Query: 114 ---LEYGPDNEANTGGQWIQNGGIANNTTVTGGGLQRVNAGGSVSDTVISAGGGQSLQGQ 170 LE G +G ++++ G V AG V+D A G + Sbjct: 78 GILLENPAAELQFRNGSVTSSGQLSDDGIRRFLGTVTVKAGKLVADHATLANVGDTWDDD 137 Query: 171 AVNTTLNGGEQWVHEGGIA---TGTVINEKGWQAVKSGAVATDTVVNTGAEGGPDAENGD 227 + + G + G V E+G + D ++ GA E+ Sbjct: 138 GIALYVAGEQAQASIADSTLQGAGGVQIERGANVTVQRSAIVDGGLHIGALQSLQPEDLP 197 Query: 228 TGQFVRGNAARTTINKNGRQIVAVEGTANTTVVYAGGDQTVHGHALDTTLNGGYQYVHNG 287 + V + T V G V + T+ G + G + Sbjct: 198 PSRVVLRDTNVTA--------VPASGAPAAVSVLGASELTLDGGHITGGRAAGVAAMQGA 249 Query: 288 GT 289 Sbjct: 250 VV 251
>ADHESNFAMILY#Adhesin family signature. Length = 309 Score = 28.7 bits (64), Expect = 0.034 Identities = 16/97 (16%), Positives = 30/97 (30%), Gaps = 19/97 (19%) Query: 291 MNGWILNSEHYAIPQRRKRVILVGSN-DPLFSIEPPQKLTEDKESWVSVKDALSDLPPLQ 349 N W A K V D ++ +K ED +W+++++ Sbjct: 96 GNAWFTKLVENAKKTENKDYFAVSDGVDVIYLEGQNEKGKEDPHAWLNLENG-------- 147 Query: 350 HGEDGSGKYYIHHPENDYQLFMRGNITPSEYYERNIK 386 + + N E+YE+N+K Sbjct: 148 -------IIFAKNIAKQLSAKDPNN---KEFYEKNLK 174
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 31.7 bits (72), Expect = 0.007 Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 15/65 (23%) Query: 168 LLTRLDDRFGERIYLDLPHLFSTKSITIPDISSNLEAWIEYLKEQYIPQESRMLS----- 222 +L L DRFG R L + + I + L W+ Y+ R+++ Sbjct: 62 VLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFL--WVLYI--------GRIVAGITGA 111 Query: 223 PGAMA 227 GA+A Sbjct: 112 TGAVA 116
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 33.7 bits (77), Expect = 5e-04 Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 2/51 (3%) Query: 17 MNASGLNQGTSGNVSARYTGGMLITPSGIAYSKMTPDMIVFVDDKGIPEAG 67 + S + GG+L +G+ + D +V V G +A Sbjct: 682 IGYSHSDDIKQLYYGVS--GGVLAHANGVTLGQPLNDTVVLVKAPGAKDAK 730
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 28.8 bits (64), Expect = 0.008 Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 10/77 (12%) Query: 85 LAVIPEYQGMGVGGRLIRTGIE--------HLRLMGCQTVFVLGHATYYPRHGFEPCAGD 136 +AV +Y+ GVG L+ IE L L Q + + +Y +H F A D Sbjct: 95 IAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLE-TQDINISA-CHFYAKHHFIIGAVD 152 Query: 137 KGYPAPYPIPEEHKACW 153 + +P E W Sbjct: 153 TMLYSNFPTANEIAIFW 169
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 26.8 bits (59), Expect = 0.007 Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 10/83 (12%) Query: 3 QVLIGDIYLRQQCDVFWLGY------TISPAYTRQGYAIEAITATIDWIKENGFSLIKAG 56 IG I +R W GY ++ Y ++G + I+W KEN F + Sbjct: 74 NNCIGRIKIRSN----WNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLE 129 Query: 57 VNPENTLSKKLLIRIGFNFSSIE 79 N + + F +++ Sbjct: 130 TQDINISACHFYAKHHFIIGAVD 152
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 1097 bits (2839), Expect = 0.0 Identities = 872/878 (99%), Positives = 876/878 (99%) Query: 1 MSYLNLRLYQRNTQCLHIRKHRLAGFFVRLFVACAFAAQAPLSSAELYFNPRFLADDPQA 60 MSYLNLRLYQRNTQCLHIRKHRLAGFFVRLFVACAFAAQAPLSSAELYFNPRFLADDPQA Sbjct: 1 MSYLNLRLYQRNTQCLHIRKHRLAGFFVRLFVACAFAAQAPLSSAELYFNPRFLADDPQA 60 Query: 61 VADLSRFENGQELPPGTYRVDIYLNNGYMATRDVTFNTGDSEQGIVPCLTRAQLASMGLN 120 VADLSRFENGQELPPGTYRVDIYLNNGYMATRDVTFNTGDSEQGIVPCLTRAQLASMGLN Sbjct: 61 VADLSRFENGQELPPGTYRVDIYLNNGYMATRDVTFNTGDSEQGIVPCLTRAQLASMGLN 120 Query: 121 TASISGMNLLADDACVPLTAMIHDATAHLDVGQQRLNLTIPQAFMSNRARGYIPPELWDP 180 TAS+SGMNLLADDACVPLT+MIHDATA LDVGQQRLNLTIPQAFMSNRARGYIPPELWDP Sbjct: 121 TASVSGMNLLADDACVPLTSMIHDATAQLDVGQQRLNLTIPQAFMSNRARGYIPPELWDP 180 Query: 181 GINAGLLNYNFSGNSVQNRIGGNSHYAYLNLQSGLNIGAWRLRDNTTWSYNSSDRSSGSK 240 GINAGLLNYNFSGNSVQNRIGGNSHYAYLNLQSGLNIGAWRLRDNTTWSYNSSD SSGSK Sbjct: 181 GINAGLLNYNFSGNSVQNRIGGNSHYAYLNLQSGLNIGAWRLRDNTTWSYNSSDSSSGSK 240 Query: 241 NKWQHINTWLERDIIPLRSRLTLGDGYTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPV 300 NKWQHINTWLERDIIPLRSRLTLGDGYTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPV Sbjct: 241 NKWQHINTWLERDIIPLRSRLTLGDGYTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPV 300 Query: 301 IHGIARGTAQVTIKQNGYDIYNSTVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTV 360 IHGIARGTAQVTIKQNGYDIYNSTVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTV Sbjct: 301 IHGIARGTAQVTIKQNGYDIYNSTVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTV 360 Query: 361 PYSSVPLLQREGHTRYSITAGEYRSGNAQQEKPRFFQSTLLHGLPAGWTIYGGTQLADRY 420 PYSSVPLLQREGHTRYSITAGEYRSGNAQQEKPRFFQSTLLHGLPAGWTIYGGTQLADRY Sbjct: 361 PYSSVPLLQREGHTRYSITAGEYRSGNAQQEKPRFFQSTLLHGLPAGWTIYGGTQLADRY 420 Query: 421 RAFNFGIGKNMGALGALSVDMTQANSTLPDDSQHDGQSVRFLYNKSLNESGTNIQLVGYR 480 RAFNFGIGKNMGALGALSVDMTQANSTLPDDSQHDGQSVRFLYNKSLNESGTNIQLVGYR Sbjct: 421 RAFNFGIGKNMGALGALSVDMTQANSTLPDDSQHDGQSVRFLYNKSLNESGTNIQLVGYR 480 Query: 481 YSTSGYFNFADTTYSRMNGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRT 540 YSTSGYFNFADTTYSRMNGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRT Sbjct: 481 YSTSGYFNFADTTYSRMNGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRT 540 Query: 541 STLYLSGSHQTYWGTSNVDEQFQAGLNTAFEDINWTLSYSLTKNAWQKGRDQMLALNVNI 600 STLYLSGSHQTYWGTSNVDEQFQAGLNTAFEDINWTLSYSLTKNAWQKGRDQMLALNVNI Sbjct: 541 STLYLSGSHQTYWGTSNVDEQFQAGLNTAFEDINWTLSYSLTKNAWQKGRDQMLALNVNI 600 Query: 601 PFSHWLRSDSKSQWRHASASYSMSHDLNGRMTNLAGIYGTLLEDNDLSYSVQTGYAGGGD 660 PFSHWLRSDSKSQWRHASASYSMSHDLNGRMTNLAG+YGTLLEDN+LSYSVQTGYAGGGD Sbjct: 601 PFSHWLRSDSKSQWRHASASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGD 660 Query: 661 GNSGSTGYATLNYRGGYGNANIGYSHSDDIKQLYYGVSGGVLAHANGVTLGQPLNDTVVL 720 GNSGSTGYATLNYRGGYGNANIGYSHSDDIKQLYYGVSGGVLAHANGVTLGQPLNDTVVL Sbjct: 661 GNSGSTGYATLNYRGGYGNANIGYSHSDDIKQLYYGVSGGVLAHANGVTLGQPLNDTVVL 720 Query: 721 VKAPGAKDAKVENQTGVRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVP 780 VKAPGAKDAKVENQTGVRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVP Sbjct: 721 VKAPGAKDAKVENQTGVRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVP 780 Query: 781 TRGAIVRAEFKARVGIKLLMTLTHNNKPLPFGAMVTSESSQSSGIVADNGQVYLSGMPLA 840 TRGAIVRAEFKARVGIKLLMTLTHNNKPLPFGAMVTSESSQSSGIVADNGQVYLSGMPLA Sbjct: 781 TRGAIVRAEFKARVGIKLLMTLTHNNKPLPFGAMVTSESSQSSGIVADNGQVYLSGMPLA 840 Query: 841 GKVQVKWGEEENAHCVANYQLPPESQQQLLTQLSAECR 878 GKVQVKWGEEENAHCVANYQLPPESQQQLLTQLSAECR Sbjct: 841 GKVQVKWGEEENAHCVANYQLPPESQQQLLTQLSAECR 878
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 30.4 bits (68), Expect = 0.003 Identities = 30/158 (18%), Positives = 49/158 (31%), Gaps = 9/158 (5%) Query: 3 WRKRGYLLAAILALASATIQAADVTITVNGKVVAKPCTVSTTNATVDLGDLYSFSLMSAG 62 W R + A LA + +TI + VT VN + + + + G Sbjct: 258 WMGRLQYVGAYLAPSYSTINTSKVTGEVNFNHLTVGDHNAAQAGIIASNKTH------IG 311 Query: 63 AASAWHDVALELTNCPVG--TSRVTASFSGAADSTGYYKNQGTAQNIQLELQDDSGNTLN 120 W L + P G + S + Q ++QN + N+ Sbjct: 312 TLDLWQSAGLNIIAPPEGGYKDKPNDKPSNTTQNNAKNDKQESSQNNSNTQVINPPNSAQ 371 Query: 121 TGATKTVQVDDSSQSAHFPLQVRALTVNGGATQGTIQA 158 + QV D + V +N A GTI+ Sbjct: 372 KTEIQPTQVIDGPFAGGKNTVVNINRINTNA-DGTIRV 408
>SURFACELAYER#Lactobacillus surface layer protein signature. Length = 439 Score = 28.1 bits (62), Expect = 0.049 Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 1/79 (1%) Query: 211 SQNLGYYLSGTTADAGNSIFTNTASFSPAQGVGVQLTRNGTIIPANNTVSLGAVGTSAVS 270 S+N G ++ +A+ N FT PA V V L ++G ++ + + + Sbjct: 133 SENAGKEITIGSAN-PNVTFTEKTGDQPASTVKVTLDQDGVAKLSSVQIKNVYAIDTTYN 191 Query: 271 LGLTANYARTGGQVTAGNV 289 + TG VT G V Sbjct: 192 SNVNFYDVTTGATVTTGAV 210
>PF06580#Sensor histidine kinase Length = 349 Score = 31.4 bits (71), Expect = 0.008 Identities = 10/49 (20%), Positives = 25/49 (51%) Query: 230 LVPLIPAIIMISTTIANIWLVKDTPAWEVVNFIGSSPIAMFIAMVVAFV 278 + +I ++ I +W V +T W ++ FI + P+A + + ++ + Sbjct: 73 MGQIILRVLPACVVIGMVWFVANTSIWRLLAFINTKPVAFTLPLALSII 121
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 33.9 bits (78), Expect = 0.001 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 20/85 (23%) Query: 26 CDVLVANGKIIAVASNIPSDIVPDCT--------VVDLSGQILCPGFIDQHVHLIGGGGE 77 D+ + +G+I A+ D+ P T V+ G+I+ G +D H+H I Sbjct: 86 ADIGLKDGRIAAIGKAGNPDMQPGVTIIVGPGTEVIAGEGKIVTAGGMDSHIHFI----- 140 Query: 78 AGPTTRTPEVALSRLTEAGVTSVVG 102 + E AL +G+T ++G Sbjct: 141 ---CPQQIEEALM----SGLTCMLG 158
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 29.8 bits (67), Expect = 0.021 Identities = 63/293 (21%), Positives = 108/293 (36%), Gaps = 26/293 (8%) Query: 82 RPFLLASALASGLLILAMAWLLPFILVLLIRVLAGV-----ASAGMLIFGSTLIMQHTRH 136 RP LL S + + MA ++ + R++AG+ A AG I T + RH Sbjct: 73 RPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADITDGDERARH 132 Query: 137 PFVLAALFSGVGIGIALGNEYVLAGLHFDLSSQTLWQGAGALSGMMLIALTLLMP-SKKH 195 ++A F G G+ G VL GL S + A AL+G+ + L+P S K Sbjct: 133 FGFMSACF---GFGMVAGP--VLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKG 187 Query: 196 AITPMPLAKTEQQIMSWW---------LLAILYGLAGFGYIIVATYLPLMAKDAGSPLLT 246 P+ W L+A+ + + G + A ++ T Sbjct: 188 ERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATT 247 Query: 247 AHLWTLVGLSIVPGCFGWLWA---AKRWGALPCLTANLLVQAI-CVLLTLASDSPLLLII 302 + +L I+ + A R G L ++ +LL A+ + I Sbjct: 248 IGI-SLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPI 306 Query: 303 SSLGFGGTFMGTTSLVMTIARQLSVPGNLNLLGFVTLIYGIGQILGPALTSML 355 L +G +L ++RQ+ L G + + + I+GP L + + Sbjct: 307 MVL-LASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAI 358
>ADHESNFAMILY#Adhesin family signature. Length = 309 Score = 28.7 bits (64), Expect = 0.026 Identities = 10/45 (22%), Positives = 17/45 (37%) Query: 17 LFVIVAVCTFFVQSCARKSNHAASFQNYHATIDGKEIAGITNNIS 61 +++ + + +CA S Q IA IT NI+ Sbjct: 6 TLLVLFLSAIILVACASGKKDTTSGQKLKVVATNSIIADITKNIA 50
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 37.7 bits (87), Expect = 1e-04 Identities = 15/128 (11%), Positives = 38/128 (29%), Gaps = 1/128 (0%) Query: 455 QPLTQQQKDAARQRYQSASPEQRQAAREKMQTSPQNQQQRDAARQRIQSASPEQRQVFKE 514 + + Q + + R+ A+E N Q + A+ Q KE Sbjct: 1044 SKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSG-SETKETQTTETKE 1102 Query: 515 KVQQRPLNQEQRDNARQRVQSASPEQRPFFREKVQESRPQRLNDSNRTARLNNEQRSAVR 574 + + + + + Q +E+ + +PQ +N ++ + Sbjct: 1103 TATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQT 1162 Query: 575 ERLSERGA 582 ++ Sbjct: 1163 NTTADTEQ 1170
>ACETATEKNASE#Acetate kinase family signature. Length = 400 Score = 29.8 bits (67), Expect = 0.015 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 10/69 (14%) Query: 187 FISGTGFATDYRRLSGHALKGSEIIRLVEESDPVAELALRRYELRLAKSLAHVVNILDP- 245 +G ++D+R L A + D A+LAL + R+ K++ + Sbjct: 273 VYGISGISSDFRDLEDAAF---------KNGDKRAQLALNVFAYRVKKTIGSYAAAMGGV 323 Query: 246 DVIVLGGGM 254 DVIV G+ Sbjct: 324 DVIVFTAGI 332
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 51.4 bits (123), Expect = 3e-09 Identities = 74/356 (20%), Positives = 126/356 (35%), Gaps = 35/356 (9%) Query: 5 ILSLALGTFGLGMAEFGIMGVLTELAHNVGISIPAAGH---MISYYALGVVVGAPIIALF 61 + ++AL G+G+ IM VL L ++ S H +++ YAL AP++ Sbjct: 11 LSTVALDAVGIGL----IMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGAL 66 Query: 62 SSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIK 121 S R+ + +LL +A + A+ + +L IGR+V+G GA + I Sbjct: 67 SDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIAD--IT 124 Query: 122 PGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAIFNIAVMASVYFWVPDI 181 G A G +S ++ P+ L FS F A N + F +P+ Sbjct: 125 DGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPES 184 Query: 182 RDEAKGKLREQ----------FHFLRSPAPWLI--FAATMFGNAGVFAWFSYVKPYMMFI 229 + LR + + A + F + G W + Sbjct: 185 HKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFG------E 238 Query: 230 SGFSETAMTFIMMLVGLGM---VLGNMLSGRISGRYSPLRIAAVTDFIIVLALLMLFFFG 286 F A T + L G+ + M++G ++ R R + ++L F Sbjct: 239 DRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFAT 298 Query: 287 GMKTTSLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAAGGQIAF--NLGSAVG 340 I + G+ LQ +L + E G G +A +L S VG Sbjct: 299 RGWMAFPIMVLLASGGIG--MPALQAMLSRQV-DEERQGQLQGSLAALTSLTSIVG 351
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 40.4 bits (94), Expect = 4e-05 Identities = 38/264 (14%), Positives = 78/264 (29%), Gaps = 11/264 (4%) Query: 162 LNAKPKERAELLEELTGTEIYGQISAMVFEQHKSARTELEKLQAQASGVALLTPEQVQSL 221 A P E E + E + Q S V + + A + + A Q+ Sbjct: 1029 APATPSETTETVAENSK-----QESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTN 1083 Query: 222 TASLQVLTDEEKQLITAQQQEQQSLNWLTRLD-ELQQEASRRQQALQQALAEEEQAQPQL 280 + +E Q ++ +++ E QE + + + E QPQ Sbjct: 1084 EVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQA 1143 Query: 281 AALSLAQPARNLRPHWE---RIAEHSTALAHTRQQIEEVNTRLQSTMALRASIRHHAAKQ 337 P N++ A+ T +E+ T + + + + Sbjct: 1144 EPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTT 1203 Query: 338 SAELQQQQQSLNAWLQEHDRFRQWNNELAGWRAQFSQQTSDREHLRQWQQQLTHAEQKLN 397 A Q S ++ ++ R + + ++DR + T+ L+ Sbjct: 1204 PATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPA-TTSSNDRSTVALCDLTSTNTNAVLS 1262 Query: 398 ALAAITLTLTADEVASAQAQHAEQ 421 A + + + QH Q Sbjct: 1263 DARAKAQFVALNVGKAVS-QHISQ 1285 Score = 33.5 bits (76), Expect = 0.005 Identities = 27/139 (19%), Positives = 54/139 (38%), Gaps = 13/139 (9%) Query: 738 QQDVLAAQSLQKAQAQFDTALQASVFDDQQAFLAALMDEQTLTQLEQLKQNLENQRRQAQ 797 Q DV + S + A+ D A A E T T E KQ + + Q Sbjct: 1004 QADVPSVPSNNEEIARVDEAPVPPP-------APATPSETTETVAENSKQESKTVEKNEQ 1056 Query: 798 TLVTQTAETLTQHQQHRPGGLSLTVTVEQIQQELAQTHQKLRENTTSQGEIRQQLKQDAD 857 TA+ ++ + V E+AQ+ + +E T++ + ++++ Sbjct: 1057 DATETTAQNREVAKEAKS-----NVKANTQTNEVAQSGSETKETQTTETKETATVEKEEK 1111 Query: 858 NRQQQQTLMQQIAQMTQQV 876 + + + Q++ ++T QV Sbjct: 1112 AKVETEK-TQEVPKVTSQV 1129
>FRAGILYSIN#Fragilysin metallopeptidase (M10C) enterotoxin signature. Length = 405 Score = 29.7 bits (66), Expect = 0.021 Identities = 13/70 (18%), Positives = 23/70 (32%), Gaps = 4/70 (5%) Query: 149 KQQHLLAAITDYYQQHYADACKLRGDQPLPIIATGHLTTVGASKSDAVRDIYIGTLDAFP 208 K+ ++ I ++Y + + + I T D + + I A Sbjct: 135 KEAQMMNEIAEFYAAPFKKTRAINEKEAFECI-YDSRTRSA--GKD-IVSVKINIDKAKK 190 Query: 209 AQNFPPADYI 218 N P DYI Sbjct: 191 ILNLPECDYI 200
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 94.9 bits (236), Expect = 1e-24 Identities = 33/149 (22%), Positives = 62/149 (41%), Gaps = 9/149 (6%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 ILV +D+A IR ++ L + G+ + + + DL++ D ++P + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 + +K+ D+PV++++A+ ++ E GA DY+ KPF EL+ I + Sbjct: 65 LLPRIKKARP--DLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA-- 120 Query: 124 SPMAVEEVIEMQGLSLDPTSHRVMAGEEP 152 E L D + G Sbjct: 121 -----EPKRRPSKLEDDSQDGMPLVGRSA 144
>PF06580#Sensor histidine kinase Length = 349 Score = 33.7 bits (77), Expect = 0.001 Identities = 17/98 (17%), Positives = 30/98 (30%), Gaps = 25/98 (25%) Query: 325 LVYNAVNH----TPEGTHITVRWQRVPHGAEFSVEDNGPGIAPEHIPRLTERFYRVDKAR 380 LV N + H P+G I ++ + VE+ G Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKN---------------- 306 Query: 381 SRQTGGSGLGLAIVKHAVNH---HESRLNIESTVGKGT 415 +G GL V+ + E+++ + GK Sbjct: 307 --TKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVN 342
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 39.0 bits (91), Expect = 3e-05 Identities = 71/347 (20%), Positives = 135/347 (38%), Gaps = 20/347 (5%) Query: 62 KFLWSPLMDRYTPPFFGRRRGWLLATQILLLVAIAAMGFLEPGTQLRWMAALAVVIAFCS 121 +F +P++ + F RR LL + V A M W+ + ++A + Sbjct: 56 QFACAPVLGALSDRF--GRRPVLLVSLAGAAVDYAIMAT----APFLWVLYIGRIVAGIT 109 Query: 122 ASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLGMLVSGGLALWLADKWLGWQGMYWLMA 181 + V A+ D+ +ER + GM+ L + ++ A Sbjct: 110 GATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGG--FSPHAPFFAAA 167 Query: 182 AL-LIPCIIATLLAPEP--TDTIPVPKTLEQAVVAPLRDFFGRNNAWLILLLIVLYKLGD 238 AL + + L PE + P+ + + + A L+ + ++ +G Sbjct: 168 ALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQ 227 Query: 239 AFAMSLTTTFLIRGVGFDAGEVGVVNKTLGLLATIVGALYGGILMQRLSLFRALLIFGIL 298 A +L F +DA +G+ G+L ++ A+ G + RL RAL+ G++ Sbjct: 228 VPA-ALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALM-LGMI 285 Query: 299 QGASNAGYWLLSITDKHLYSMGAAVFFENLCGGMGTSAFVALLMTLCNKSFSATQFALLS 358 A GY LL+ + + V GG+G A A+L ++ L+ Sbjct: 286 --ADGTGYILLAFATRGWMAFPIMVLL--ASGGIGMPALQAMLSRQVDEERQGQLQGSLA 341 Query: 359 ALSAVGRVYVGPVAGWFVEAHGWSTF--YLFSVAAAVPGLILLLVCR 403 AL+++ + VGP+ + A +T+ + + AA+ L L + R Sbjct: 342 ALTSLTSI-VGPLLFTAIYAASITTWNGWAWIAGAALYLLCLPALRR 387
>PF06291#Lambda prophage Bor protein Length = 102 Score = 26.5 bits (58), Expect = 0.027 Identities = 11/34 (32%), Positives = 18/34 (52%) Query: 3 KKILFPLVALFMLAGCAKPPTTIEVSPTITLPQQ 36 KK+LF ++ GCA+ T+ PT P++ Sbjct: 7 KKMLFSAALAMLITGCAQQTFTVGNKPTAVTPKE 40
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 29.0 bits (65), Expect = 0.044 Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 13/73 (17%) Query: 60 ERSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIG 119 E P+ E + ++G+ A + +Y RL D +++ G Sbjct: 121 EPKRRPSKLEDDSQDGMPLVGRSAAMQ----EIYRVLARLMQTD---------LTLMITG 167 Query: 120 PTGSGKTLLAETL 132 +G+GK L+A L Sbjct: 168 ESGTGKELVARAL 180
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 34.3 bits (78), Expect = 0.002 Identities = 34/133 (25%), Positives = 68/133 (51%), Gaps = 15/133 (11%) Query: 191 ERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGEMDDAPD- 249 LE A +E + +L R +++ ++ S+ +Q++A ++L E + + Sbjct: 291 AALEAEKADLEHQSQVLNAN---RQSLRRDLDASREAK---KQLEAEHQKLEEQNKISEA 344 Query: 250 ENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMS-AEATVVRGYIDWMVQVPWNARSK 308 ++L+R +DA++ EAK++ EAE QKL+ + +S A +R +D + A+ + Sbjct: 345 SRQSLRRDLDASR---EAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASRE----AKKQ 397 Query: 309 VKKDLRQAQEILD 321 V+K L +A L Sbjct: 398 VEKALEEANSKLA 410
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 117 bits (294), Expect = 3e-38 Identities = 49/88 (55%), Positives = 67/88 (76%) Query: 2 NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61 NK LI K+A +++K + A+DA+ ++V+ L +G+ V L+GFG F V+ERAAR GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGR 62 Query: 62 NPQTGKEITIAAAKVPSFRAGKALKDAV 89 NPQTG+EI I A+KVP+F+AGKALKDAV Sbjct: 63 NPQTGEEIKIKASKVPAFKAGKALKDAV 90
>PF08280#M protein trans-acting positive regulator Length = 530 Score = 27.1 bits (60), Expect = 0.021 Identities = 24/138 (17%), Positives = 41/138 (29%), Gaps = 20/138 (14%) Query: 1 MQTQIKVRGYHLDVYQHVNNARYL-------EFLEEARWHGLENSDSFHWMTAH------ 47 +Q I + Y N Y E++ + N FH + Sbjct: 361 LQHFIPETNLFVSPYYKGNQKLYTSLKLIVEEWMAKLPGKRYLNHKHFHLFCHYVEQILR 420 Query: 48 ------NIAFVVVN-ININYRRPAVLSDLLTITSQLQQLNGKSGILSQVITLEPEGQVVA 100 + FV N IN + + + + Q+ L+P+ + Sbjct: 421 NIQPPLVVVFVASNFINAHLLTDSFPRYFSDKSIDFHSYYLLQDNVYQIPDLKPDLVITH 480 Query: 101 DALITFVCIDLKTQKALA 118 LI FV +L A+A Sbjct: 481 SQLIPFVHHELTKGIAVA 498
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 29.0 bits (65), Expect = 0.019 Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 10/64 (15%) Query: 193 LTVLTQHLGLSLRDCMAFGDAMNDREMLGSVGSGFIMGN----------AMPQLRAELPH 242 TVL Q L + D +A + + ++ + +P+++ P Sbjct: 16 RTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDLLPRIKKARPD 75 Query: 243 LPVI 246 LPV+ Sbjct: 76 LPVL 79
>LUXSPROTEIN#Bacterial autoinducer-2 (AI-2) production protein LuxS signature. Length = 171 Score = 31.4 bits (71), Expect = 0.002 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 7/66 (10%) Query: 37 TKEHLLPHFL-EHLGNNHLDI------GVGTGFYLTHVPESSLISLMDLNEASLNAASTR 89 T EHL F+ HL + ++I G TGFY++ + S + D A++ Sbjct: 54 TLEHLYAGFMRNHLNGDSVEIIDISPMGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKV 113 Query: 90 AGESKI 95 ++KI Sbjct: 114 ENQNKI 119
>OMPTIN#Omptin serine protease signature. Length = 317 Score = 526 bits (1357), Expect = 0.0 Identities = 313/317 (98%), Positives = 316/317 (99%) Query: 1 MRAKLLGIVLTTPIAISSFASTETLSFTPDNINADISLGTLSGKTKERVYLAEEGGRKVS 60 MRAKLLGIVLTTPIAISSFASTETLSFTPDNINADISLGTLSGKTKERVYLAEEGGRKVS Sbjct: 1 MRAKLLGIVLTTPIAISSFASTETLSFTPDNINADISLGTLSGKTKERVYLAEEGGRKVS 60 Query: 61 QLDWKFNNAAIIKGAINWDLMSQISIGAAGWTTLGSRGGNMVDQDWMDSSNPGTWTDESR 120 QLDWKFNNAAIIKGAINWDLM QISIGAAGWTTLGSRGGNMVDQDWMDSSNPGTWTDESR Sbjct: 61 QLDWKFNNAAIIKGAINWDLMPQISIGAAGWTTLGSRGGNMVDQDWMDSSNPGTWTDESR 120 Query: 121 HPDTQLNYANEFDLNIKGWLLNEPNYRLGLMAGYQESRYSFTARGGSYIYSSEEGFRDDI 180 HPDTQLNYANEFDLNIKGWLLNEPNYRLGLMAGYQESRYSFTARGGSYIYSSEEGFRDDI Sbjct: 121 HPDTQLNYANEFDLNIKGWLLNEPNYRLGLMAGYQESRYSFTARGGSYIYSSEEGFRDDI 180 Query: 181 GSFPNGERAIGYKQRFKMPYIGLTGSYRYEDFELGGTFKYSGWVEASDNDEHYDPGKRIT 240 GSFPNGERAIGYKQRFKMPYIGLTGSYRYEDFELGGTFKYSGWVE+SDNDEHYDPGKRIT Sbjct: 181 GSFPNGERAIGYKQRFKMPYIGLTGSYRYEDFELGGTFKYSGWVESSDNDEHYDPGKRIT 240 Query: 241 YRSKVKDQNYYSVAVNAGYYVTPNAKVYIEGAWNRVTNKKGNTSLYDHNDNTSDYSKNGA 300 YRSKVKDQNYYSVAVNAGYYVTPNAKVY+EGAWNRVTNKKGNTSLYDHN+NTSDYSKNGA Sbjct: 241 YRSKVKDQNYYSVAVNAGYYVTPNAKVYVEGAWNRVTNKKGNTSLYDHNNNTSDYSKNGA 300 Query: 301 GIENYNFITTAGLKYTF 317 GIENYNFITTAGLKYTF Sbjct: 301 GIENYNFITTAGLKYTF 317
>PF06580#Sensor histidine kinase Length = 349 Score = 31.0 bits (70), Expect = 0.009 Identities = 29/184 (15%), Positives = 66/184 (35%), Gaps = 34/184 (18%) Query: 306 EELTRMAKMVSDML-FLAQADNNQLIPEKKILNLADEVGKVFDFFEALAEDR-GVELRFV 363 + M +S+++ + + N + + LADE+ V + + LA + L+F Sbjct: 191 TKAREMLTSLSELMRYSLRYSNARQVS------LADELTVVDSYLQ-LASIQFEDRLQFE 243 Query: 364 GDECQVAGDPLMLRRALSNLLSNALRY----TPTGETIVVGCQMVDHLVQVTVENPGTPI 419 D + + L+ N +++ P G I++ + V + VEN G+ Sbjct: 244 NQINPAIMDVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLA 303 Query: 420 APEHLPRLFDRFYRVDPSRQRKGEGSGIGLAIVK---SIVVAHKGTVAVTSDARGTRFVI 476 E +G GL V+ ++ + + ++ ++ Sbjct: 304 LKN------------------TKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMV 345 Query: 477 ILPA 480 ++P Sbjct: 346 LIPG 349
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 85.7 bits (212), Expect = 2e-21 Identities = 35/117 (29%), Positives = 62/117 (52%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 +L+ +D+ L + L+ AG+ V + N + GD DL++ D+++PD N +D Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118 ++ ++ A +P+L+++A T +K E GA DYL KPF EL+ + L Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 38.7 bits (90), Expect = 5e-05 Identities = 25/189 (13%), Positives = 60/189 (31%), Gaps = 13/189 (6%) Query: 254 QAQTVNSDSLQSVKLPA-GLSSQILLQRPDIMEAEHALM-----AANANIGAARAAFFPS 307 + +S + +K + +I+++ + + L+ A A+ ++ Sbjct: 87 NGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQS----- 141 Query: 308 ISLTSGISTASSDLSSLFNASSGMWNFIPKIEIPIFNAGRNQANLDIAEIRQQQSVVNYE 367 SL + + + + P F + L + + ++Q Sbjct: 142 -SLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQN 200 Query: 368 QKIQNAFKEVADALALRQSLNDQISAQQRYLASLQITLQRARALYQHGAVSYLEVLDAER 427 QK Q + A R ++ +I+ + + L +L A++ VL+ E Sbjct: 201 QKYQ-KELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQEN 259 Query: 428 SLFATRQTL 436 L Sbjct: 260 KYVEAVNEL 268
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 698 bits (1802), Expect = 0.0 Identities = 214/1059 (20%), Positives = 440/1059 (41%), Gaps = 54/1059 (5%) Query: 1 MIEWIIRRSVANRFLVLMGALFLSIWGTWTIINTPVDALPDLSDVQVIIKTSYPGQAPQI 60 M + IRR + A+ L + G I+ PV P ++ V + +YPG Q Sbjct: 1 MANFFIRR----PIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQT 56 Query: 61 VENQVTYPLTTTMLSVPGAKTVRGFSQ-FGDSYVYVIFEDGTDPYWARSRVLEYLNQVQG 119 V++ VT + M + + S G + + F+ GTDP A+ +V L Sbjct: 57 VQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATP 116 Query: 120 KLPAGVSAELGP-DATGVGWIYEYALVDRSGKHDLADLRSLQDWFLKYELKTIPDVAEVA 178 LP V + + + ++ V + D+ +K L + V +V Sbjct: 117 LLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQ 176 Query: 179 SVGGVVKEYQVVIDPQRLAQYGISLADVKSALDASNQEAGGSSIELA------EAEYMVR 232 G ++ +D L +Y ++ DV + L N + + + + Sbjct: 177 LFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASII 235 Query: 233 ASGYLQTLDDFNHIVLKASENGVPVYLRDVAKVQVGPEMRRGIAELNGEGEVAGGVVILR 292 A + ++F + L+ + +G V L+DVA+V++G E IA +NG+ AG + L Sbjct: 236 AQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGK-PAAGLGIKLA 294 Query: 293 SGKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDNLSGKLLEEFIVVAVV 352 +G NA + A+K KL L+ P+G++++ YD + + +I + L E ++V +V Sbjct: 295 TGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLV 354 Query: 353 CALFLWHVRSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGIAIAVGAMVDAAIVMIE 412 LFL ++R+ L+ I++P+ L F ++ G + N +++ G+ +A+G +VD AIV++E Sbjct: 355 MYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVE 414 Query: 413 NAHKRLEEWLHQHPDATLDNKTRWQVITDASVEVGPALFISLLIITLSFIPIFTLEGQEG 472 N + + E D + + ++ AL ++++ FIP+ G G Sbjct: 415 NVERVMME----------DKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTG 464 Query: 473 RLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPLNRF----------LI 522 ++ + T AMA + L+A+++ P L ++ + E F + Sbjct: 465 AIYRQFSITIVSAMALSVLVALILTPALCATLLKP-VSAEHHENKGGFFGWFNTTFDHSV 523 Query: 523 RVYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPSTLPGISA 582 Y + K+L LL+ AL V ++ ++ FLP+ ++G L M G + Sbjct: 524 NHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQ 583 Query: 583 AEAASMLQKTDKLIM--SVPEVARVFGKTGKAETATDSAPLEMVETTIQLKPQDQW-RPG 639 +L + + V VF G + + + LKP ++ Sbjct: 584 ERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQN---AGMAFVSLKPWEERNGDE 640 Query: 640 MTMDKIIEELDNTVRLPGLANLWVPPIRNRIDMLSTGIKSPIGIKVSGTVLADI-DTMAE 698 + + +I + + + +++ + I +G + + Sbjct: 641 NSAEAVIHRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQ 700 Query: 699 QIEEVARTVPGVASALAERLEGGRYINVEINREKAARYGMTVADVQLFVTSAVGGAMVGE 758 + A+ + S LE +E+++EKA G++++D+ +++A+GG V + Sbjct: 701 LLGMAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVND 760 Query: 759 TVEGIARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADVKVSTGPSMLKTENA 818 ++ + ++ +R P+ + +L + + + + + G L+ N Sbjct: 761 FIDRGRVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNG 820 Query: 819 RPTSWIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLERANHKLKLMVPM 878 P+ I +A L + +A K L G ++G + ++ +V + Sbjct: 821 LPSMEIQGEAAPGTSSGDAMALMENLASK--LPAGIGYDWTGMSYQERLSGNQAPALVAI 878 Query: 879 TLMIIFVLLYLAFRRVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAA 938 + +++F+ L + + ++ VP +VG + V G + G++A Sbjct: 879 SFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSA 938 Query: 939 EFGVVMLMYLRHAIEAEPSLNNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPI 998 + ++++ + + +E E + + EA +R+RP MT I G+LP+ Sbjct: 939 KNAILIVEFAKDLMEKE----------GKGVVEATLMAVRMRLRPILMTSLAFILGVLPL 988 Query: 999 LWGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKL 1037 GAGS + + ++GGM++A LL++F +P + + Sbjct: 989 AISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFVV 1027
>HOKGEFTOXIC#Hok/Gef cell toxic protein family signature. Length = 52 Score = 57.9 bits (140), Expect = 5e-16 Identities = 18/50 (36%), Positives = 27/50 (54%) Query: 1 MLTKYALVAVIVLCLTVLGFTLLVGDSLCEFTVKERNIEFKAVLAYEPKK 50 + + V+++CLT+L FT L SLCE ++ E A +AYE K Sbjct: 3 LPRSSLVWCVLIVCLTLLIFTYLTRKSLCEIRYRDGYREVAAFMAYESGK 52
>PF03944#delta endotoxin Length = 633 Score = 27.3 bits (60), Expect = 0.009 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 3/43 (6%) Query: 21 IAPLDTQDIDLQINSSVEKQFG---DAIRTTILDVLARYNVRG 60 I+P+ ++ Q + + ++FG D++R + ARY +RG Sbjct: 496 ISPIHATQVNNQTRTFISEKFGNQGDSLRFEQNNTTARYTLRG 538
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 38.6 bits (90), Expect = 1e-05 Identities = 14/67 (20%), Positives = 33/67 (49%), Gaps = 2/67 (2%) Query: 155 NPFTNGHRYLIQQAAAQCDWLHLFLVKEDSSR--FPYEDRLDLVLKGTADIPRLTVHRGS 212 +P T GH +I++ D +++ +++ + + F ++RL+ + K A +P V Sbjct: 10 DPITFGHLDIIERGCRLFDQVYVAVLRNPNKQPMFSVQERLEQIAKAIAHLPNAQVDSFE 69 Query: 213 EYIISRA 219 ++ A Sbjct: 70 GLTVNYA 76
>PF06580#Sensor histidine kinase Length = 349 Score = 29.8 bits (67), Expect = 0.028 Identities = 17/104 (16%), Positives = 30/104 (28%), Gaps = 23/104 (22%) Query: 440 LLDNAFEASLRSDEGNKIVELYLSDEGDDVVIEVADQGCGVPESLRDKIFEQGVSTRADE 499 L++N + + + L + + V +EV + G ++ Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKN---------------T 307 Query: 500 PGEHGIGLY-----LIASYVTRCGGVITLEDNDPCGTLFSIYIP 538 G GL L Y T I L + + IP Sbjct: 308 KESTGTGLQNVRERLQMLYGTEAQ--IKLSEKQGKVNAM-VLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 62.2 bits (151), Expect = 2e-13 Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 5/121 (4%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 MT T+L+ +D+ + + + + G+ + + N A I L++ D + Sbjct: 1 MTGA-TILVADDDAAIRTVLNQALS-RAGY-DVRITSNAATLWRWIAAGDGDLVVTDVVM 57 Query: 61 PDGRGINLLHELVQAHYPG-DVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLT 119 PD +LL + + P V+ +A + T +A G +DYL KP L + Sbjct: 58 PDENAFDLLPRI-KKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116 Query: 120 R 120 R Sbjct: 117 R 117
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 43.2 bits (102), Expect = 8e-07 Identities = 41/201 (20%), Positives = 64/201 (31%), Gaps = 34/201 (16%) Query: 16 AFLFLFAPTAFAAEQTVEAPSVDARAW----------ILMDYASGKVLAEGNADEKLDPA 65 + L A A P + I MD ASG+ L ADE+ Sbjct: 7 CIISLLATLPLAV-HASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADERFPMM 65 Query: 66 SLTKIMTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLN 125 S K++ V + A +L + + +P V D ++V +L Sbjct: 66 STFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSP------VSEKHLADGMTVGELC 119 Query: 126 KGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTT---FQTVHGLDAPGQF- 181 I S N A L V G + + +++G T ++T PG Sbjct: 120 AAAITMSDNSAANLLLATVGGPAG-----LTAFLRQIGDNVTRLDRWETELNEALPGDAR 174 Query: 182 --STARDMA------LLGKAL 194 +T MA L + L Sbjct: 175 DTTTPASMAATLRKLLTSQRL 195
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 39.0 bits (91), Expect = 2e-05 Identities = 58/266 (21%), Positives = 105/266 (39%), Gaps = 17/266 (6%) Query: 71 LLGPLSDRIGRRPVMLAGVVWFIVTCLAILLAQNIEQFTLLRFLQGISLCFIGAVGYAAI 130 +LG LSDR GRRPV+L + V + A + + R + GI+ GAV A I Sbjct: 62 VLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGA-TGAVAGAYI 120 Query: 131 QESFEEAVCIKITALMANVALIAPLLGPLVGTAWIHVLPWEGMFVLFAALAAISFFGLQR 190 + + + M+ + GP++G P F AAL ++F Sbjct: 121 ADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSP-HAPFFAAAALNGLNFLTGCF 179 Query: 191 AMPETATRIGEKLSLKELGRDYKLVLKNG-RFVAGALALGFVSLPLLAWIAQSP--IIII 247 +PE+ L + L G VA +A+ F ++ + Q P + +I Sbjct: 180 LLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFF----IMQLVGQVPAALWVI 235 Query: 248 TGEQLSSYEYGLLQVPIFGALIAGNL----LLARLTSRRTVRSLIIMGGWPIMIGLLVAA 303 GE ++ + + + I +L + + +R R +++G G ++ A Sbjct: 236 FGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLA 295 Query: 304 AATVISSHAYLWMTAGLSIYAFGIGL 329 AT ++ + + + GIG+ Sbjct: 296 FAT----RGWMAFPIMVLLASGGIGM 317
>PF05272#Virulence-associated E family protein Length = 892 Score = 34.3 bits (78), Expect = 0.001 Identities = 25/61 (40%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Query: 302 DSSWVAGVSVVLWGLGASLGFPLTISAASDTGPDAPTRVSVVATTGYLAFLVGPPLLGYL 361 D SW+AG +VVLW SL LT DT PD R ++A YL F P L Sbjct: 270 DWSWLAGCTVVLWPDCDSLREKLTRQELKDT-PDPLAREKLLAAKPYLPFDKQPGQKAML 328 Query: 362 G 362 G Sbjct: 329 G 329
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 51.6 bits (123), Expect = 1e-10 Identities = 14/81 (17%), Positives = 31/81 (38%) Query: 2 RRANDPQRREKIIQATLEAVKLYGIHAVTHRKIATLAGVPLGSMTYYFSGIDELLLEAFS 61 + + R+ I+ L G+ + + +IA AGV G++ ++F +L E + Sbjct: 5 TKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWE 64 Query: 62 RFTEIMSRQYQAFFSDVSDAP 82 + + + P Sbjct: 65 LSESNIGELELEYQAKFPGDP 85
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 32.1 bits (73), Expect = 0.006 Identities = 21/106 (19%), Positives = 34/106 (32%), Gaps = 6/106 (5%) Query: 394 LMIGMITFQFSTFSFGMGNAAGLLFAGIML-GFMRANHPTFG-YIPQ--GALSMVKEFGL 449 L++ + +L+ G ++ G A G YI + FG Sbjct: 76 LLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADITDGDERARHFGF 135 Query: 450 MVFMAGVGLSAGSGINNGLGAIGGQM--LIAGLIVSLVPVVICFLF 493 M G G+ AG + +G A + L + CFL Sbjct: 136 MSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLL 181
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.0 bits (67), Expect = 0.010 Identities = 9/18 (50%), Positives = 12/18 (66%) Query: 31 LVLLGPSGAGKSSLLRVL 48 +VL G G GKS+L+ L Sbjct: 599 VVLEGTGGIGKSTLINTL 616
>ECOLIPORIN#E.coli/Salmonella-type porin signature. Length = 383 Score = 28.7 bits (64), Expect = 0.023 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 9/54 (16%) Query: 2 RRVFWLVAAALLLAGCTGEKGIVEKEGYQLDTRRQAQAAYPRIKVLVIHYTADD 55 R+V LV ALL AG I K+G +LD Y ++ L HY +DD Sbjct: 3 RKVLALVIPALLAAGAAHAAEIYNKDGNKLDL-------YGKVDGL--HYFSDD 47
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 74.8 bits (184), Expect = 3e-17 Identities = 70/363 (19%), Positives = 123/363 (33%), Gaps = 65/363 (17%) Query: 1 MKVLVTGATSGLGRNAVEFLCQKGISVRA---------TGRNEAMGKLLEKMGAEFVPAD 51 MK LVTGA +G + + L + G V +A +LL + G +F D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 52 LTELVSSQAKVMLAGIDTLWHCS-------SFTSPWGTQQAFDLANVRATRRLGEWAVAW 104 L + + ++ S +P A+ +N+ + E Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPH----AYADSNLTGFLNILEGCRHN 116 Query: 105 GVRNFIHISSPSLYFDYHHHRDIKEDFRPHRFANEFARSKAASEEVINMLSQANPQTRFT 164 +++ ++ SS S+Y + D + +A +K A+E + + S T Sbjct: 117 KIQHLLYASSSSVYGL-NRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSH-LYGLPAT 174 Query: 165 ILRPQSLFGPHDK--VFIPRLAHMMHHYGSILLPHGGSALVDMTYYENAVHAMWLASQEA 222 LR +++GP + + + + M SI + + G D TY ++ A+ Sbjct: 175 GLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVI 234 Query: 223 CDKLPS--------------GRVYNITNGEHRTLRSIVQKLIDELNIDCRIRSVPYPMLD 268 RVYNI N L +Q L D L I+ + +P D Sbjct: 235 PHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLPLQPGD 294 Query: 269 MIARSMERLGRKSAKEPPLTHYGVSKLNFDFTLDITRAQEELGYQPVLTLDEGIEKTAAW 328 + T D E +G+ P T+ +G++ W Sbjct: 295 V----------------LETS-----------ADTKALYEVIGFTPETTVKDGVKNFVNW 327 Query: 329 LRD 331 RD Sbjct: 328 YRD 330
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 52.5 bits (126), Expect = 1e-09 Identities = 28/125 (22%), Positives = 51/125 (40%), Gaps = 17/125 (13%) Query: 4 RILVLGASGYIGQHLVHTLSQQGHQILA---------AARHVDRLAKLQLANVSCHKVDL 54 + LV GA+G+IG H+ L + GHQ++ + RL L HK+DL Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 55 NWPDNLPVLLQN--IDTVYFLVH------SMGEGGDFIAQERQVALNVRDALREVPVKQV 106 + + L + + V+ H S+ + LN+ + R ++ + Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 107 IFLSS 111 ++ SS Sbjct: 122 LYASS 126
>LCRVANTIGEN#Low calcium response V antigen signature. Length = 326 Score = 29.7 bits (66), Expect = 0.011 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 7/63 (11%) Query: 193 LMSTHHPLHANAIADSIIQVEPDGRVTQGLPTEQLTTKKLAAL------YRVSADQIHHH 246 + H L A+ I D I++V D G +L ++LA L Y V +I+ H Sbjct: 119 MAVMHFSLTADRIDDDILKVIVDSMNHHGDARSKL-REELAELTAELKIYSVIQAEINKH 177 Query: 247 LSA 249 LS+ Sbjct: 178 LSS 180
>INTIMIN#Intimin signature. Length = 939 Score = 255 bits (653), Expect = 3e-78 Identities = 119/378 (31%), Positives = 195/378 (51%), Gaps = 21/378 (5%) Query: 79 GEQAKAFALGKVRDALSQQVNQHVESWLSPWGNASVDVKVDNEGHFTGSRGSWFVPLQDN 138 G+ AK ALG + Q + +++WL +G A V+++ N F GS + +P D+ Sbjct: 184 GDYAKDTALGIAGN----QASSQLQAWLQHYGTAEVNLQSGNN--FDGSSLDFLLPFYDS 237 Query: 139 DRYLTWSQLGLTQQDDGLVSNVGVGQRWARGSWLVGYNTFYDNLLDENLQRAGFGAEAWG 198 ++ L + Q+G D +N+G GQR+ ++GYN F D + R G G E W Sbjct: 238 EKMLAFGQVGARYIDSRFTANLGAGQRFFLPENMLGYNVFIDQDFSGDNTRLGIGGEYWR 297 Query: 199 EYLRLSANFYQPFAAWHE--QTATQEQRMARGYDLTARMRMPFYQHLNTSVSVEQYFGDR 256 +Y + S N Y + WHE ++R A G+D+ +P Y L + EQY+GD Sbjct: 298 DYFKSSVNGYFRMSGWHESYNKKDYDERPANGFDIRFNGYLPSYPALGAKLMYEQYYGDN 357 Query: 257 VDLFNSGTGYHNPVALSLGLNYTPVPLVTVTAQHKQGESGENQNNLGLNLNYRFGVPLKK 316 V LFNS NP A ++G+NYTP+PLVT+ ++ G EN + Y+F P + Sbjct: 358 VALFNSDKLQSNPGAATVGVNYTPIPLVTMGIDYRHGTGNENDLLYSMQFRYQFDKPWSQ 417 Query: 317 QLSAGEVVESQSLRGSRYDNPQRNNLPTLEYRQRKTLTVFLATPPWDLKPGETVPLKLQI 376 Q+ V E ++L GSRYD QRNN LEY+++ L++ + + T ++L + Sbjct: 418 QIEPQYVNELRTLSGSRYDLVQRNNNIILEYKKQDILSLNI-PHDINGTERSTQKIQLIV 476 Query: 377 RSRYGIRQLIWQGDTQILS-----LTPGAQANSEEGWTLIMPDWQNGEGASNHWRLSVVV 431 +S+YG+ +++W D+ + S G+Q S + + I+P + +G SN ++++ Sbjct: 477 KSKYGLDRIVWD-DSALRSQGGQIQHSGSQ--SAQDYQAILPAYV--QGGSNVYKVTARA 531 Query: 432 EDNQGQRVSSNEITLTLV 449 D G SSN + LT+ Sbjct: 532 YDRNGN--SSNNVLLTIT 547
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 73.7 bits (181), Expect = 2e-17 Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 2/117 (1%) Query: 7 ATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLDPDLILLDLNMPGMN 66 ATIL+ DD +RT + Q +S A + SN + D DL++ D+ MP N Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRI--TSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 67 GLETLDKLREKSLSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQA 123 + L ++++ ++V S N + A ++GA YL K + +L+ + +A Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRA 118
>PF06580#Sensor histidine kinase Length = 349 Score = 52.6 bits (126), Expect = 2e-09 Identities = 36/172 (20%), Positives = 73/172 (42%), Gaps = 23/172 (13%) Query: 424 PESSRELLSQIRNELNASWVQLRELLTTFRLQLTEPGLRPALEASCEEYSAKFGFPVKLD 483 P +RE+L+ + + S + +LT +++ + S +F ++ + Sbjct: 190 PTKAREMLTSLSELMRYSLRYSNARQVSLADELT------VVDSYLQLASIQFEDRLQFE 243 Query: 484 YQLPPRL----VPSHQAIHLLQIAREALSNALKH-----SQASEVVVTVAQNDNQVKLTV 534 Q+ P + VP L+Q E N +KH Q ++++ +++ V L V Sbjct: 244 NQINPAIMDVQVPPM----LVQTLVE---NGIKHGIAQLPQGGKILLKGTKDNGTVTLEV 296 Query: 535 QDNGCGVPENAIRSNHYGMIIMRDRAQSLRG-DCRVRRRESGGTEVVVTFIP 585 ++ G +N S G+ +R+R Q L G + +++ E G + IP Sbjct: 297 ENTGSLALKNTKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLIP 348
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 31.0 bits (70), Expect = 0.011 Identities = 35/166 (21%), Positives = 60/166 (36%), Gaps = 22/166 (13%) Query: 258 IMSLLYLATFGSFIGFSAGFAMLSKTQFPDVQILQYAFFGPFIGALARSA---GGALSDR 314 I+S + L+ + I A A L K + + FFG F S ++ Sbjct: 474 IVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKI 533 Query: 315 LGGTRVTLVNFILMAIFSGLLFLTLPTD----GQGGSFMAFFAVFLALFLTAGLGSGSTF 370 LG T L+ + L+ +LFL LP+ G F+ L +G+T Sbjct: 534 LGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM----------IQLPAGATQ 583 Query: 371 QMISVIFRKLTMDRVKAEGGSDER-----AMREAATDTAAALGFIS 411 + + ++T +K E + E + A + F+S Sbjct: 584 ERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVS 629
>PF08280#M protein trans-acting positive regulator Length = 530 Score = 29.8 bits (67), Expect = 0.042 Identities = 21/105 (20%), Positives = 36/105 (34%), Gaps = 2/105 (1%) Query: 526 PIDVELTESCLIENDELALSVIQQFSRLGAQVHLDDFGTGYSSLSQLARFPIDAIKLDQV 585 P+ V S I L S + FS + + ++ Q+ D + Sbjct: 425 PLVVVFVASNFINAHLLTDSFPRYFS--DKSIDFHSYYLLQDNVYQIPDLKPDLVITHSQ 482 Query: 586 FVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVESAKEDAFLTK 630 + +H + V I L++Q + V+ K A LTK Sbjct: 483 LIPFVHHELTKGIAVAEISFDESILSIQELMYQVKEEKFQADLTK 527
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 49.3 bits (117), Expect = 4e-09 Identities = 50/260 (19%), Positives = 97/260 (37%), Gaps = 22/260 (8%) Query: 4 LSGKRILVTGVASKLSIAYGIAQAMHREGAEL-AFTYQNDKLKGRVEEFAAQLGSDIVLQ 62 + GK +TG A I +A+ + +GA + A Y +KL+ V A+ Sbjct: 6 IEGKIAFITGAAQ--GIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFP 63 Query: 63 CDVAEDTSIDTMFAELGKVWPKFDGFVHSIGF---APGDQLDGDYVNAVTREGFKIAHDI 119 DV + +ID + A + + D V+ G L + A F + Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEAT----FSVN--- 116 Query: 120 SSYSFVAMAKACRSMLNP-GSALLTLSYLGAERAIPNYNVMGLAKASLEANVRYMANAMG 178 S+ F A + M++ +++T+ A + +KA+ + + + Sbjct: 117 STGVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELA 176 Query: 179 PEGVRVNAISAGPIRTLAASGI--------KDFRKMLAHCEAVTPIRRTVTIEDVGNSAA 230 +R N +S G T + + + L + P+++ D+ ++ Sbjct: 177 EYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVL 236 Query: 231 FLCSDLSAGISGEVVHVDGG 250 FL S + I+ + VDGG Sbjct: 237 FLVSGQAGHITMHNLCVDGG 256
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 55.4 bits (133), Expect = 6e-12 Identities = 17/65 (26%), Positives = 33/65 (50%) Query: 1 MTSKLEIRHKQRQDEIINAARRCFRRCGFHAASMSQIASEAQLSVGQIYRYFANKDAIIE 60 M K + ++ + I++ A R F + G + S+ +IA A ++ G IY +F +K + Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60 Query: 61 EMVRR 65 E+ Sbjct: 61 EIWEL 65
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 48.3 bits (115), Expect = 2e-08 Identities = 28/133 (21%), Positives = 55/133 (41%), Gaps = 10/133 (7%) Query: 41 PVSVVSELTGR-TSAALSAEVRPQVGGIIQKRLFKEGDLVKAGQPLYQIDAASYQAAWNE 99 V +V+ G+ T + S E++P I+++ + KEG+ V+ G L ++ A +A + Sbjct: 79 QVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLK 138 Query: 100 ARAALQQAQALVKADCQKAQRYARLVKENGVSQQDADDAQSTCAQDKASV--------EA 151 +++L QA+ Q R L K + D Q+ ++ + Sbjct: 139 TQSSLLQARLEQ-TRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFST 197 Query: 152 KKAALETARINLD 164 + +NLD Sbjct: 198 WQNQKYQKELNLD 210 Score = 31.7 bits (72), Expect = 0.005 Identities = 15/116 (12%), Positives = 32/116 (27%), Gaps = 9/116 (7%) Query: 83 QPLYQIDAASYQAAWN--EARAALQQAQALVKADCQKAQRYARLVKENGVSQQDADDAQS 140 L A + A + K+ ++ + KE Q ++ Sbjct: 241 SSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEE--YQLVTQLFKN 298 Query: 141 TCAQDKASVEAKKAALET----ARINLDWTTVTAPISGRI-GISSVTPGALVTASQ 191 L + + AP+S ++ + T G +VT ++ Sbjct: 299 EILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAE 354
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1162 bits (3008), Expect = 0.0 Identities = 583/1033 (56%), Positives = 760/1033 (73%), Gaps = 6/1033 (0%) Query: 3 SRFFVRRPVFAWVIAILIMLAGILAIRTLPVAQYPDVAPPTIKISATYTGASAETLENSV 62 + FF+RRP+FAWV+AI++M+AG LAI LPVAQYP +APP + +SA Y GA A+T++++V Sbjct: 2 ANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTV 61 Query: 63 TQVIEQQLTGLDNLLYFSSTSSSDGSVSINVTFEQGTDPDTAQVQVQNKIQQAESRLPSE 122 TQVIEQ + G+DNL+Y SSTS S GSV+I +TF+ GTDPD AQVQVQNK+Q A LP E Sbjct: 62 TQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQE 121 Query: 123 VQQTGVTVEKSQSNFLLIAAVYDTTDKASSSDIADWLVSNVQDPLARVEGVGSLQVFGAE 182 VQQ G++VEKS S++L++A + DI+D++ SNV+D L+R+ GVG +Q+FGA+ Sbjct: 122 VQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGAQ 181 Query: 183 YAMRIWLDPAKLASYSLMPSDVQSAIEAQNVQVTAGKIGALPSPDTQQLTATVRAQSRLQ 242 YAMRIWLD L Y L P DV + ++ QN Q+ AG++G P+ QQL A++ AQ+R + Sbjct: 182 YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFK 241 Query: 243 TVDQFKNIIVKSQSDGAVVRIKDVARVEMGSEDYTAIGKLNGHPSAGVAVMLSPGANALN 302 ++F + ++ SDG+VVR+KDVARVE+G E+Y I ++NG P+AG+ + L+ GANAL+ Sbjct: 242 NPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALD 301 Query: 303 TATLVKDKIAEFQRNMPQGYDIAYPKDSTEFIKISVEDVIQTLFEAIVLVVCVMYLFLQN 362 TA +K K+AE Q PQG + YP D+T F+++S+ +V++TLFEAI+LV VMYLFLQN Sbjct: 302 TAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQN 361 Query: 363 LRATLIPALAVPVVLLGTFGVLALFGYSINTLTLFAMVLAIGLLVDDAIVVVENVERIMR 422 +RATLIP +AVPVVLLGTF +LA FGYSINTLT+F MVLAIGLLVDDAIVVVENVER+M Sbjct: 362 MRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMM 421 Query: 423 DEGLPAREATEKSMGEISGALVAIALVLSAVFLPMAFFGGSTGVIYRQFSITIISAMLLS 482 ++ LP +EATEKSM +I GALV IA+VLSAVF+PMAFFGGSTG IYRQFSITI+SAM LS Sbjct: 422 EDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALS 481 Query: 483 VVVALTLTPALCGSVL----QHVPPHKKGFFGAFNRFYRRTEDKYQRGVIYVLRRAARTM 538 V+VAL LTPALC ++L +K GFFG FN + + + Y V +L R + Sbjct: 482 VLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYL 541 Query: 539 GLYVVLGGGMALMMWKLPGSFLPTEDQGEIMVQYTLPAGATAARTAEVNRQIVDWFLINE 598 +Y ++ GM ++ +LP SFLP EDQG + LPAGAT RT +V Q+ D++L NE Sbjct: 542 LIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKNE 601 Query: 599 KANTDVIFTVDGFSFSGSGQNTGMAFVSLKNWSQRKGAENTAQAIALRATKELGTIRDAT 658 KAN + +FTV+GFSFSG QN GMAFVSLK W +R G EN+A+A+ RA ELG IRD Sbjct: 602 KANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDGF 661 Query: 659 VFAMTPPAVDGLGQSNGFTFELLANGGTDRETLLQMRNQLIEKANQSP-ELHSVRANDLP 717 V PA+ LG + GF FEL+ G + L Q RNQL+ A Q P L SVR N L Sbjct: 662 VIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGLE 721 Query: 718 QMPQLQVDIDSNKAVSLGLSLNDVTDTLSSAWGGTYVNDFIDRGRVKKVYIQGDSEFRSA 777 Q ++++D KA +LG+SL+D+ T+S+A GGTYVNDFIDRGRVKK+Y+Q D++FR Sbjct: 722 DTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRML 781 Query: 778 PSDLGKWFVRGSDNAMTPFSAFATTRWLYGPERLVRYNGSAAYEIQGENATGFSSGDAMT 837 P D+ K +VR ++ M PFSAF T+ W+YG RL RYNG + EIQGE A G SSGDAM Sbjct: 782 PEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAMA 841 Query: 838 KMEELANSLPAGTTWAWSGLSLQEKLASGQALSLYAVSILVVFLCLAALYESWSVPFSVI 897 ME LA+ LPAG + W+G+S QE+L+ QA +L A+S +VVFLCLAALYESWS+P SV+ Sbjct: 842 LMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVM 901 Query: 898 LVIPLGLLGAALAAWMRDLNNDVYFQVALLTTIGLSSKNAILIVEFA-EAAVAEGYSLSR 956 LV+PLG++G LAA + + NDVYF V LLTTIGLS+KNAILIVEFA + EG + Sbjct: 902 LVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVVE 961 Query: 957 AALRAAQTRLRPIIMTSLAFIAGVMPLAIATGAGANSRIAIGTGIIGGTLTATLLAIFFV 1016 A L A + RLRPI+MTSLAFI GV+PLAI+ GAG+ ++ A+G G++GG ++ATLLAIFFV Sbjct: 962 ATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFV 1021 Query: 1017 PLFFVLVKRLFAG 1029 P+FFV+++R F G Sbjct: 1022 PVFFVVIRRCFKG 1034 Score = 75.3 bits (185), Expect = 9e-16 Identities = 53/330 (16%), Positives = 117/330 (35%), Gaps = 19/330 (5%) Query: 721 QLQVDIDSNKAVSLGLSLNDVTDTLSSA----WGGTYVNDFIDRGRVKKVYIQGDSEFRS 776 +++ +D++ L+ DV + L G G+ I + F++ Sbjct: 183 AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFKN 242 Query: 777 APSDLGKWFVRGSDN-AMTPFSAFATTRWLYGPER--LVRYNGSAA-----YEIQGENAT 828 P + GK +R + + ++ A L G + R NG A G NA Sbjct: 243 -PEEFGKVTLRVNSDGSVVRLKDVARVE-LGGENYNVIARINGKPAAGLGIKLATGANAL 300 Query: 829 GFSSGDAMTKMEELANSLPAG--TTWAWSGLSLQEKLASGQALSLYAVSILVVFLCLAAL 886 + K+ EL P G + + + +L+ +LV + + Sbjct: 301 DTAKA-IKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLV-MYLF 358 Query: 887 YESWSVPFSVILVIPLGLLGAALAAWMRDLNNDVYFQVALLTTIGLSSKNAILIVEFAEA 946 ++ + +P+ LLG + + ++ IGL +AI++VE E Sbjct: 359 LQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER 418 Query: 947 AVAEGYSLSRAALRAAQTRLR-PIIMTSLAFIAGVMPLAIATGAGANSRIAIGTGIIGGT 1005 + E + A + ++++ ++ ++ A +P+A G+ I+ Sbjct: 419 VMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAM 478 Query: 1006 LTATLLAIFFVPLFFVLVKRLFAGKPRRQE 1035 + L+A+ P + + + + + Sbjct: 479 ALSVLVALILTPALCATLLKPVSAEHHENK 508
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.0 bits (65), Expect = 0.048 Identities = 24/166 (14%), Positives = 49/166 (29%), Gaps = 11/166 (6%) Query: 70 DVQKAIADIDSARALYGQTNASLFPTVNAALSSTRSRSLANGTGTTAEADGTVSSYTLDL 129 A AD ++ Q +RS L + + + + Sbjct: 128 TALGAEADTLKTQSSLLQARL----EQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEE 183 Query: 130 FGRNQSLSRAARETWLASEFTAQNTRLTLIAEISTAWLTLAADNSNLALAKETMASAENS 189 R SL + TW ++ + AE T + + + ++ Sbjct: 184 VLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTV-------LARINRYENLSRVEKSR 236 Query: 190 LKIIQRQQQVGTAAATDVSEAMSVYQQARASVASYQTQVMQDKNAL 235 L A V E + Y +A + Y++Q+ Q ++ + Sbjct: 237 LDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEI 282
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 69.5 bits (170), Expect = 4e-15 Identities = 67/312 (21%), Positives = 113/312 (36%), Gaps = 18/312 (5%) Query: 5 SLSWALILGLLAGIGPMCTDLYLPALPEMSEQLAATTTITQLTLTASLIGLGVGQLLFGP 64 L L L +G L +P LP + L + +T L + Q P Sbjct: 6 PLIVILSTVALDAVG---IGLIMPVLPGLLRDLVHSNDVTA-HYGILLALYALMQFACAP 61 Query: 65 ----LSDKIGRKRPLILSLLLFIVSSILCATTNNIYWLVVWRFIQGIAGAGGSVLSRSIA 120 LSD+ GR+ L++SL V + AT ++ L + R + GI GA G+V IA Sbjct: 62 VLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIA 121 Query: 121 RDKYQGVTLTQFFALLMTVNGLAPVLSPVLGGYIVSTFDWRTLFWVMAEISTVLLLGCLL 180 D G + F + G V PVLGG + F F+ A ++ + L Sbjct: 122 -DITDGDERARHFGFMSACFGFGMVAGPVLGGLM-GGFSPHAPFFAAAALNGLNFLTGCF 179 Query: 181 FIHETLPENKRGSSL----LLTGRSVVQNRRFMRFCLIQSFMLAGLFAYIGSSSFVL--Q 234 + E+ +R L + + + F + L + ++ +V+ + Sbjct: 180 LLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFF-IMQLVGQVPAALWVIFGE 238 Query: 235 KEFGFSPMQFSLVFGLNG-TGLIIASWIFSRLARRINAMTLLRGGLIAAILCALLTVLCA 293 F + + G + + I +A R+ L G+IA +L Sbjct: 239 DRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFAT 298 Query: 294 WIQLPIPALVAL 305 + P +V L Sbjct: 299 RGWMAFPIMVLL 310
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 31.0 bits (70), Expect = 0.007 Identities = 9/16 (56%), Positives = 14/16 (87%) Query: 38 LVGESGSGKSLIAKAI 53 + GESG+GK L+A+A+ Sbjct: 165 ITGESGTGKELVARAL 180
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 89.5 bits (222), Expect = 4e-24 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 3/105 (2%) Query: 7 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGL 66 LV DD + +R ++ L G++ V + + AG V++D MP+ + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYD-VRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 67 ELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPF 111 +LL I+ LPVL+++A+ I A++ GA Y+ KPF Sbjct: 64 DLLPRIKKARPD--LPVLVMSAQNTFMTAIKASEKGAYDYLPKPF 106
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 66.4 bits (162), Expect = 3e-14 Identities = 35/188 (18%), Positives = 73/188 (38%), Gaps = 23/188 (12%) Query: 1 MSKIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKKFNPDVLTLDVEMP 60 M+ +L DD A +R ++ + ++ V + I + D++ DV MP Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAG--YDVRITSNAATLWRWIAAGDGDLVVTDVVMP 58 Query: 61 RMDGLDFLEKLMRLRPMPVVMVSSLTGKGS-EVTLRALELGAIDFVTKPQLGIREGMLAY 119 + D L ++ + RP V+V ++ + + ++A E GA D++ KP + E + Sbjct: 59 DENAFDLLPRIKKARPDLPVLV--MSAQNTFMTAIKASEKGAYDYLPKP-FDLTELIGII 115 Query: 120 SEMIAEKVRTAAKASLAAHKPLSVPTTLKAGPLLSSEKLIAIGASTGGTEAIRHVLQPLP 179 +AE R +K + + + +G S E R + + + Sbjct: 116 GRALAEPKRRPSKLEDDSQDGMPL-----------------VGRSAAMQEIYRVLARLMQ 158 Query: 180 LSSPALLI 187 ++ Sbjct: 159 TDLTLMIT 166
>PF06580#Sensor histidine kinase Length = 349 Score = 42.5 bits (100), Expect = 3e-06 Identities = 23/151 (15%), Positives = 49/151 (32%), Gaps = 52/151 (34%) Query: 359 ELDKSLIERIIDPLT--HLVRNSLDHGIELPEKRLAAGKNSVGNLILSAEHQGGNICIEV 416 +++ ++++ + P+ LV N + HGI G ++L G + +EV Sbjct: 245 QINPAIMDVQVPPMLVQTLVENGIKHGIA--------QLPQGGKILLKGTKDNGTVTLEV 296 Query: 417 TDDGAGLNRERILAKAASQGLTVSENMSDDEVAMLIFAPGFSTAEQVTDVSGRGVGMDVV 476 + G+ + G G+ V Sbjct: 297 ENTGSLALKNTK--------------------------------------ESTGTGLQNV 318 Query: 477 KRNIQEMGG---HVEIQSKQGTGTTIRILLP 504 + +Q + G +++ KQG +L+P Sbjct: 319 RERLQMLYGTEAQIKLSEKQG-KVNAMVLIP 348
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.0 bits (67), Expect = 0.012 Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 11/93 (11%) Query: 46 LISISSPKELIQIAEYFRTPLATAVTGGDRISNSESPIPGGGDDYTQSQGEVNKRPNIEE 105 L +SSP A P + G + ++ PGGGDD GE +++ Sbjct: 384 LADVSSPTAAAGGAGGGEPPKKRDPSAG---AGTDPGGPGGGDD-----GEDPFGEWLDD 435 Query: 106 LKKRM---EQSRLRKLRGDLDQLIESDPKLRAL 135 R+ + L+ R L + + S P L Sbjct: 436 EVARLRLRGRWLLKPRRAALIEALRSAPALAGC 468
>PF05844#YopD protein Length = 295 Score = 32.7 bits (74), Expect = 0.001 Identities = 12/28 (42%), Positives = 22/28 (78%), Gaps = 2/28 (7%) Query: 76 MDLLALLYRLMAKSRQMGMFSLERDIEN 103 ++LL +L+R+ K+R++G+ L+RD EN Sbjct: 74 VELLLILFRIAQKARELGV--LQRDNEN 99
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 49.0 bits (117), Expect = 2e-08 Identities = 32/129 (24%), Positives = 58/129 (44%), Gaps = 20/129 (15%) Query: 132 AMMLH-IRQQAQAQLPEAITQAVIGRPINFQGLGGDEANTQAQGILERAAKRAGFKDVVF 190 M+ H I+Q + ++ P+ + + + I E +A+ AG ++V Sbjct: 89 KMLQHFIKQVHSNSFMRPSPRVLVCVPVGATQV-------ERRAIRE-SAQGAGAREVFL 140 Query: 191 QYEPVAAGLDYEATLQEEKRVLVVDIGGGTTDCSLLLMGPQWRSRLDREASLLGHSGCRI 250 EP+AA + + E +VVDIGGGTT+ +++ + ++ S RI Sbjct: 141 IEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLN-----------GVVYSSSVRI 189 Query: 251 GGNDLDIAL 259 GG+ D A+ Sbjct: 190 GGDRFDEAI 198 Score = 35.1 bits (81), Expect = 5e-04 Identities = 32/137 (23%), Positives = 56/137 (40%), Gaps = 23/137 (16%) Query: 332 RLSYRLV---RSAEESKIALSSV--AETRASLPFISDELAT------LISQQGLESALNQ 380 R +Y + +AE K + S + + LA ++ + AL + Sbjct: 203 RRNYGSLIGEATAERIKHEIGSAYPGDEVREIEVRGRNLAEGVPRGFTLNSNEILEALQE 262 Query: 381 PLARILEQVQLALDNAQEKPDV--------IYLTGGSARSPLIKKALTEQLPGIPIAGGD 432 PL I+ V +AL+ Q P++ + LTGG A + + L E+ GIP+ + Sbjct: 263 PLTGIVSAVMVALE--QCPPELASDISERGMVLTGGGALLRNLDRLLMEET-GIPVVVAE 319 Query: 433 D-FGSVTAGLARWAEVV 448 D V G + E++ Sbjct: 320 DPLTCVARGGGKALEMI 336
>ECOLIPORIN#E.coli/Salmonella-type porin signature. Length = 383 Score = 529 bits (1365), Expect = 0.0 Identities = 256/389 (65%), Positives = 295/389 (75%), Gaps = 22/389 (5%) Query: 1 MKVKVLSLLVPALLVAGAANAAEVYNKDGNKLDLYGKVDGLHYFSDNKSEDGDQTYMRLG 60 MK KVL+L++PALL AGAA+AAE+YNKDGNKLDLYGKVDGLHYFSD+ S+DGDQTYMR+G Sbjct: 1 MKRKVLALVIPALLAAGAAHAAEIYNKDGNKLDLYGKVDGLHYFSDDSSKDGDQTYMRVG 60 Query: 61 FKGETQVTDQLTGYGQWEYQIQGNSAENE-NNSWTRVAFAGLKFQDVGSFDYGRNYGVVY 119 FKGETQ+ DQLTGYGQWEY +Q N+ E E NSWTR+AFAGLKF D GSFDYGRNYGV+Y Sbjct: 61 FKGETQINDQLTGYGQWEYNVQANTTEGEGANSWTRLAFAGLKFGDYGSFDYGRNYGVLY 120 Query: 120 DVTSWTDVLPEFGGDTYG-SDNFMQQRGNGFATYRNTDFFGLVDGLNFAVQYQGKNGSV- 177 DV WTD+LPEFGGD+Y +DN+M R NG ATYRNTDFFGLVDGLNFA+QYQGKN S Sbjct: 121 DVEGWTDMLPEFGGDSYTYADNYMTGRANGVATYRNTDFFGLVDGLNFALQYQGKNESQS 180 Query: 178 -----DGEGMTNNGRGALRQNGDGVGGSITYDY-EGFGIGAAVSSSKRTDDQNFGLNGYG 231 G NNG NGDG G S TYD GF GAA ++S RT++Q Sbjct: 181 ADDVNIGTNNRNNGDDIRYDNGDGFGISTTYDIGMGFSAGAAYTTSDRTNEQV-----NA 235 Query: 232 ERYLGNGDRAETYTGGLKYDANNIYLAAQYTQTYNATRVGSL------GWANKAQNFEAV 285 + GD+A+ +T GLKYDANNIYLA Y++T N T G G ANK QNFE Sbjct: 236 GGTIAGGDKADAWTAGLKYDANNIYLATMYSETRNMTPYGKTDKGYDGGVANKTQNFEVT 295 Query: 286 AQYQFDFGLRPSVAYLQSKGKNLGVINGRNYDDEDILKYVDVGATYYFNKNMSTYVDYKI 345 AQYQFDFGLRP+V++L SKGK+L N N DD+D++KY DVGATYYFNKN STYVDYKI Sbjct: 296 AQYQFDFGLRPAVSFLMSKGKDLTY-NNVNGDDKDLVKYADVGATYYFNKNFSTYVDYKI 354 Query: 346 NLLD-DNRFTRDAGINTDDIVALGLVYQF 373 NLLD D+ F +DAGI+TDDIVALG+VYQF Sbjct: 355 NLLDDDDPFYKDAGISTDDIVALGMVYQF 383
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 47.9 bits (114), Expect = 9e-09 Identities = 26/145 (17%), Positives = 60/145 (41%), Gaps = 20/145 (13%) Query: 1 MNNMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLDAHVLITDLSMP 60 M +++ADD + + ++L + + + ++ L + D +++TD+ MP Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRI--TSNAATLWRWIAAGDGDLVVTDVVMP 58 Query: 61 GDKYGDGITLIKYIKRHFPSLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGA------PT 114 + L+ IK+ P L ++V++ N +A+ ++GA P Sbjct: 59 D---ENAFDLLPRIKKARPDLPVLVMSAQNTFM--TAIKA-------SEKGAYDYLPKPF 106 Query: 115 DLPKALAALQKGKKFTPESVSRLLE 139 DL + + + + S+L + Sbjct: 107 DLTELIGIIGRALAEPKRRPSKLED 131
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 81.0 bits (200), Expect = 6e-18 Identities = 29/106 (27%), Positives = 47/106 (44%) Query: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLNKNHIDIVLSDVNMPNMDGYRL 886 ILV DD R +L L GY + ++ + D+V++DV MP+ + + L Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 887 TQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 932 RI++ LPV+ ++A + E G L KP L + Sbjct: 66 LPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTEL 111
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 562 bits (1449), Expect = 0.0 Identities = 180/484 (37%), Positives = 269/484 (55%), Gaps = 35/484 (7%) Query: 1 MTAINRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPE 60 MT IL+ DD+ +R +L+ A + G++ +N T A D+V+ D+ MP+ Sbjct: 1 MTGA-TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPD 59 Query: 61 MDGIKALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRAL 120 + L ++ PV++M+A TA++A GA+DY+ KPFDL EL I+ RAL Sbjct: 60 ENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119 Query: 121 QLQSMKKEIRHLHQALSTSWQWGH-ILTNSPAMMDICKDTAKIALSQASVLISGESGTGK 179 + L Q G ++ S AM +I + A++ + +++I+GESGTGK Sbjct: 120 AEP------KRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGK 173 Query: 180 ELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERANEG 239 EL+ARA+H +R GPF+ +N AA+P L+ESELFGHEKGAFTGAQT G FE+A G Sbjct: 174 ELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGG 233 Query: 240 TLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRVIAATNRDLQAMVKEGTFR 299 TL LDEIG+MP+ Q +LLR+LQ+ E+ +GG I+ D+R++AATN+DL+ + +G FR Sbjct: 234 TLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFR 293 Query: 300 EDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWP 359 EDL+YRLNV+ L LPPLRDR EDI L HF+Q+ E + D A+ L+ A WP Sbjct: 294 EDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKEGLD-VKRFDQEALELMKAHPWP 352 Query: 360 GNIRELSNVIERAVVMNSGPIIFSEDLPPQIRQPV---------CNAGEAKTAPVGERN- 409 GN+REL N++ R + +I E + ++R + +G + E N Sbjct: 353 GNVRELENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENM 412 Query: 410 ----------------LKEEIKRVEKRIIMEVLEQQEGNRTRTALMLGISRRALMYKLQE 453 + +E +I+ L GN+ + A +LG++R L K++E Sbjct: 413 RQYFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRE 472 Query: 454 YGID 457 G+ Sbjct: 473 LGVS 476
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 32.5 bits (74), Expect = 0.003 Identities = 23/119 (19%), Positives = 46/119 (38%), Gaps = 6/119 (5%) Query: 59 GFSRGDLGFALSGISIAYGFSK-FIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT 117 + +G +L+ I + ++ I G V+ R R L G+I + + F AT Sbjct: 242 HWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAF---AT 298 Query: 118 SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLF 176 +++ L G+G P + ++ +G + ++ + PLLF Sbjct: 299 RGWMAFPIMVLLASG--GIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLF 355
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 35.2 bits (80), Expect = 2e-04 Identities = 16/42 (38%), Positives = 27/42 (64%) Query: 249 RLRQEGHQIGWQEGKIEGWQEGKLEGLQQGKLEGLQKGKLEG 290 +L+ + H+ G+Q G EG Q+G +G Q+G +GL++G E Sbjct: 46 QLQMQAHEQGYQAGIAEGRQQGHKQGYQEGLAQGLEQGLAEA 87 Score = 33.2 bits (75), Expect = 0.001 Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 4/75 (5%) Query: 248 ERLRQEGHQIGWQEGKIEGWQEGKLEGLQQGKLEGLQKGKLEGLQEGMHE---QAIKIAL 304 L Q+ Q+ Q + +G+Q G EG QQG +G Q+G +GL++G+ E Q I Sbjct: 38 PSLEQQLAQLQMQAHE-QGYQAGIAEGRQQGHKQGYQEGLAQGLEQGLAEAKSQQAPIHA 96 Query: 305 RMLEQGFEREIVLAA 319 RM + E + L A Sbjct: 97 RMQQLVSEFQTTLDA 111 Score = 32.5 bits (73), Expect = 0.001 Identities = 19/56 (33%), Positives = 33/56 (58%) Query: 232 IAERSPLQKERLMTIAERLRQEGHQIGWQEGKIEGWQEGKLEGLQQGKLEGLQKGK 287 I E P +++L + + ++G+Q G EG+ +G ++G EGL QG +GL + K Sbjct: 33 IEEAEPSLEQQLAQLQMQAHEQGYQAGIAEGRQQGHKQGYQEGLAQGLEQGLAEAK 88
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 32.1 bits (72), Expect = 1e-04 Identities = 17/41 (41%), Positives = 28/41 (68%) Query: 6 RLRQEGHQIGWQEGKIEGWQEGKLEGLQEGKLEGLQEGMHE 46 +L+ + H+ G+Q G EG Q+G +G QEG +GL++G+ E Sbjct: 46 QLQMQAHEQGYQAGIAEGRQQGHKQGYQEGLAQGLEQGLAE 86
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 31.7 bits (72), Expect = 0.003 Identities = 28/150 (18%), Positives = 51/150 (34%), Gaps = 31/150 (20%) Query: 94 LLIPMVDTADQARQVVSATRYPPYGERGVGASVARAARWGRIENYMAQVNDSLCLLVQVE 153 ++ PM+ T ++ RQ A + E V+DS+ + + VE Sbjct: 389 VMFPMIATLEELRQAK--------------AIMQEEKDKLLSEGV--DVSDSIEVGIMVE 432 Query: 154 SKTALDNLDEILDVEGIDGVFIGPADL----------SASLGYPDNAGHPEVQRIIETSI 203 + + + +D IG DL + + Y HP + R+++ I Sbjct: 433 IPSTAVAANLFA--KEVDFFSIGTNDLIQYTMAADRMNERVSYLYQPYHPAILRLVDMVI 490 Query: 204 RRIRAAGKAAGF---LAVAPDMAQQCLAWG 230 + + GK G +A L G Sbjct: 491 KAAHSEGKWVGMCGEMAGDEVAIPLLLGLG 520
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 28.7 bits (64), Expect = 0.049 Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 6/32 (18%) Query: 189 AGVFTFFWLD------DTPGQARFLSKQEKTL 214 G+ +F W + DTPG FL++ ++L Sbjct: 58 TGITSFQWENTKVNIIDTPGHMDFLAEVYRSL 89
>FIMBRIALPAPE#Escherichia coli: P pili tip fibrillum papE protein signature. Length = 173 Score = 32.7 bits (74), Expect = 4e-04 Identities = 15/29 (51%), Positives = 21/29 (72%) Query: 13 LAAVLLTPNVQAADNLHFYGNLLSKSCTL 41 L AVL++ +V AADNL F G L+ +CT+ Sbjct: 13 LGAVLMSQHVHAADNLTFKGKLIIPACTV 41
>FIMBRIALPAPE#Escherichia coli: P pili tip fibrillum papE protein signature. Length = 173 Score = 39.6 bits (92), Expect = 1e-06 Identities = 48/157 (30%), Positives = 66/157 (42%), Gaps = 20/157 (12%) Query: 16 AQAADSDITFHGTLVSPPACAISDGKTVEVEFRDVIIDNI--NGNNFRQ-----NVPY-- 66 AAD ++TF G L+ P AC + + EV + D+ I N+ +G N + N PY Sbjct: 22 VHAAD-NLTFKGKLIIP-ACTVQNA---EVNWGDIEIQNLVQSGGNQKDFTVDMNCPYSL 76 Query: 67 -TITCDPDVRDDAWEMTLSWTGSQTSYDNAAI---ETNVTGLGIELQQNGQPFTLGTPLK 122 T+ L S S D I +N +G+G + G T G Sbjct: 77 GTMKVTITSNGQTGNSILVPNTSTASGDGLLIYLYNSNNSGIGNAVTL-GSQVTPGKITG 135 Query: 123 INPSTPPTLQA-VPVKASDASLSEGTFSAWATLQVDY 158 P+ TL A + K + SL GTFSA ATL Y Sbjct: 136 TAPARKITLYAKLGYKGNMQSLQAGTFSATATLVASY 172
>FIMBRIALPAPF#Escherichia coli: P pili tip fibrillum papF protein signature. Length = 167 Score = 38.2 bits (88), Expect = 4e-06 Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 12/136 (8%) Query: 38 PPCTVKGS---AVEFGNVIIKNIDGSNYRQPVGYTLNCSNSVSDDLQMQLQGTTTTINGE 94 PPCT+ V+FGN+ +++D S +++C S L +++ G T + Sbjct: 32 PPCTINNGQNIVVDFGNINPEHVDNSRGEVTKNISISCPYK-SGSLWIKVTGNTMGVGQN 90 Query: 95 TVLSTGINGFGIRI-QDASSHAPVALAGNNWLPFNVN-------SRPGFEAVPVKQSGTQ 146 VL+T I FGI + Q P+ L + + V S F +VP + Sbjct: 91 NVLATNITHFGIALYQGKGMSTPLTLGNGSGNGYRVTAGLDTARSTFTFTSVPFRNGSGI 150 Query: 147 LTASEFSATMTMVVEY 162 L +F T +M + Y Sbjct: 151 LNGGDFRTTASMSMIY 166
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 741 bits (1915), Expect = 0.0 Identities = 225/881 (25%), Positives = 383/881 (43%), Gaps = 70/881 (7%) Query: 8 RLRGIACYIALAISGGSVNAWADDSIQFDPRFLELKGDTKIDLGKFSKKGYVDAGKYNLR 67 RL G + +A + + + + F+PRFL DL +F + G Y + Sbjct: 22 RLAGFFVRLFVACAFAAQAPLSSAELYFNPRFLADDPQAVADLSRFENGQELPPGTYRVD 81 Query: 68 VFINKQSLSDEYDINWYVSENDPTKTYACLTPELVAALGLKEGIAKSLQWTHNDECLKPG 127 +++N + D+ + + + CLT +A++GL + +D C+ Sbjct: 82 IYLNNGYM-ATRDVTFN-TGDSEQGIVPCLTRAQLASMGLNTASVSGMNLLADDACVPLT 139 Query: 128 QL-DGMEVENDLSQSALLLTVPQAYLEYTSSDWDPPSRWDDGISGLIADYSLNAQTRHQE 186 + + D+ Q L LT+PQA++ + + PP WD GI+ + +Y+ + + Sbjct: 140 SMIHDATAQLDVGQQRLNLTIPQAFMSNRARGYIPPELWDPGINAGLLNYNFSGNSVQNR 199 Query: 187 QGGEDSHDISGNGTVGANLGAWRFRADWQSDYQHTRSNDDEDDSSNSTTSKNWDWSRYYA 246 GG +SH N G N+GAWR R + Y + S+ + W + Sbjct: 200 IGG-NSHYAYLNLQSGLNIGAWRLRDNTTWSYNSSDSSSG--------SKNKWQHINTWL 250 Query: 247 WRALPSLKAKLSLGEDYLNSDIFDGFNYIGSSVSTDDQMLPPNLRGYAPDVSGVAHSSAK 306 R + L+++L+LG+ Y DIFDG N+ G+ +++DD MLP + RG+AP + G+A +A+ Sbjct: 251 ERDIIPLRSRLTLGDGYTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQ 310 Query: 307 VTISQMGRVLYETQVPAGPFRIQDI-GDSVSGTLHVRVEEQNGQVQEYDVTTASMPFLTR 365 VTI Q G +Y + VP GPF I DI SG L V ++E +G Q + V +S+P L R Sbjct: 311 VTIKQNGYDIYNSTVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQR 370 Query: 366 QGQVRYKVMMGRPEDWNHKTEGGFFSGGEASWGVADGWSLYGGALADEHYQSAAMGVGRD 425 +G RY + G N + E F G+ GW++YGG + Y++ G+G++ Sbjct: 371 EGHTRYSITAGEYRSGNAQQEKPRFFQSTLLHGLPAGWTIYGGTQLADRYRAFNFGIGKN 430 Query: 426 LAQFGALAFDVTHSHVNLDHDSAYGKGKLDGNSFRVSYAKDFDELNSRVTFAGYRFSEKN 485 + GAL+ D+T ++ L DS + DG S R Y K +E + + GYR+S Sbjct: 431 MGALGALSVDMTQANSTLPDDSQH-----DGQSVRFLYNKSLNESGTNIQLVGYRYSTSG 485 Query: 486 FMTMSEYLDASQSDMARTGND-------------------KEMYTITYNQNFAAAGVSVY 526 + ++ + + D + +T Q ++Y Sbjct: 486 YFNFADTTYSRMNGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRTS-TLY 544 Query: 527 LNYSHRTYWDRP-EQTNYNLMFSHYFNMGSIRNMSISVTGYRYEYDDNTDKGMYLSMSIP 585 L+ SH+TYW + + F + ++S + + + D+ + L+++IP Sbjct: 545 LSGSHQTYWGTSNVDEQFQAGLNTAFEDIN---WTLSYSLTKNAWQKGRDQMLALNVNIP 601 Query: 586 WSD-----------SSTVTYNGSYGS-GSDSSQVGYFNRI--DDATHYQINVGT-----S 626 +S ++ +Y+ S+ G ++ G + + D+ Y + G Sbjct: 602 FSHWLRSDSKSQWRHASASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGDG 661 Query: 627 EQHGSVDGYLSHDGTLAKVDLSANYHEGEYRSAGIALQGGATLTAHGGALHRTQNMGGTR 686 + L++ G ++ H + + + GG A+G L Q + T Sbjct: 662 NSGSTGYATLNYRGGYGNANIGY-SHSDDIKQLYYGVSGGVLAHANGVTLG--QPLNDTV 718 Query: 687 LLIDADGIANVPVESNGALVYTNMFGKAVVADINNYYRNQAYIDLNNLPEDAEATQSVVQ 746 +L+ A G + VE N V T+ G AV+ Y N+ +D N L ++ + +V Sbjct: 719 VLVKAPGAKDAKVE-NQTGVRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVAN 777 Query: 747 ATLTEGAIGYRKFKVISGQKAMAVLRLRDGSYPPFGAEVKNDEQQQVGIVDDEGNVYLAG 806 T GAI +FK G K + L + PFGA V ++ Q GIV D G VYL+G Sbjct: 778 VVPTRGAIVRAEFKARVGIKLLMTLT-HNNKPLPFGAMVTSESSQSSGIVADNGQVYLSG 836 Query: 807 INAGEHMMVFW--EGSAQCEI--VLPKPLPADLFRGLLLPC 843 + + V W E +A C LP L L C Sbjct: 837 MPLAGKVQVKWGEEENAHCVANYQLPPESQQQLLTQLSAEC 877
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 44.9 bits (106), Expect = 3e-07 Identities = 32/165 (19%), Positives = 70/165 (42%), Gaps = 2/165 (1%) Query: 34 LDTIARNFSLSASSAGFIVTAAQLGYAAGLLFLVPLGDMFERRRLIVSMTLLAAGGMLIT 93 L IA +F+ +S ++ TA L ++ G L D +RL++ ++ G +I Sbjct: 37 LPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIG 96 Query: 94 ASSQSLA-MMILGTALTGLFSVVAQILVPLA-ATLASPDKRGKVVGTIMSGLLLGILLAR 151 S ++I+ + G + LV + A + RGK G I S + +G + Sbjct: 97 FVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGP 156 Query: 152 TVAGLLANLGGWRTVFWVASVLMALMALALWRGLPQMKSETHLNY 196 + G++A+ W + + + + + + +++ + H + Sbjct: 157 AIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKEVRIKGHFDI 201
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.5 bits (63), Expect = 0.017 Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 12/94 (12%) Query: 23 PYQEILLTRLCMHMQSKLLENRNKMLKAQGINETLFMALITLESQENHSIQPSELSCALG 82 P QE+ L + + L R A+G + + T + ++L ALG Sbjct: 756 PEQELRLVETGVQGRLWALLTREGAPAAEGAAQKGYSVNTTFVTI-------ADLVQALG 808 Query: 83 -----SSRTNATRIADELEKRGWIERRESDNDRR 111 SS ++ D L + GW RE+ RR Sbjct: 809 ADPGKSSPMLEGQVRDWLNENGWEYLRETSGQRR 842
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 78.7 bits (194), Expect = 5e-18 Identities = 64/412 (15%), Positives = 120/412 (29%), Gaps = 97/412 (23%) Query: 25 LLLTLLFIIIAVAIGIYWFLVLRHFEETDDA----YVAGNQIQIMSQVSGSVTKVWADNT 80 L FI+ + I VL E A +G +I + V ++ Sbjct: 57 PRLVAYFIMGFLVIAFILS-VLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEG 115 Query: 81 DFVKEGDVLVTLDPTDARQAFEKA------------------------------------ 104 + V++GDVL+ L A K Sbjct: 116 ESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPY 175 Query: 105 ----------------KTALASSVRQTHQLMINSKQLQANIEVQKIALAKA-------QS 141 K ++ Q +Q +N + +A + + +S Sbjct: 176 FQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKS 235 Query: 142 DYNRRVPLGNANLIGREELQHARDAVTSAQAQLDVAIQQYNANQAMILGTKLEDQPAVQQ 201 + L + I + + + A +L V Q ++ IL K E Q Q Sbjct: 236 RLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQL 295 Query: 202 AATEVRN------------------AWLALERTRIVSPMTGYVSRRAVQ-PGAQISPTTP 242 E+ + + + I +P++ V + V G ++ Sbjct: 296 FKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAET 355 Query: 243 LMAVVPA-TNMWVDANFKETQIANMRIGQPVTITTDIYGDDVKY---TGKVVGLDMGTGS 298 LM +VP + V A + I + +GQ I + + +Y GKV + + Sbjct: 356 LMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAF-PYTRYGYLVGKVKNI-----N 409 Query: 299 AFSLLPAQNATGNWIKVVQRLPVRIELDQKQLEQYPLRIGLSTLVSVNTTNR 350 ++ G V+ + + PL G++ + T R Sbjct: 410 LDAIE--DQRLGLVFNVIISIEENCLST--GNKNIPLSSGMAVTAEIKTGMR 457
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 132 bits (333), Expect = 9e-36 Identities = 97/405 (23%), Positives = 169/405 (41%), Gaps = 23/405 (5%) Query: 17 IALSLATFMQVLDSTIANVAIPTIAGNLGSSLSQGTWVITSFGVANAISIPLTGWLAKRV 76 I L + +F VL+ + NV++P IA + + WV T+F + +I + G L+ ++ Sbjct: 17 IWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQL 76 Query: 77 GEVKLFLWSTIAFAIASWACGVS-SSLNMLIFFRVIQGIVAGPLIPLSQSLLLNNYPPAK 135 G +L L+ I S V S ++LI R IQG A L ++ P Sbjct: 77 GIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKEN 136 Query: 136 RSIALALWSMTVIVAPICGPILGGYISDNYHWGWIFFINVPIGVAVVLMTLQTLRGRETR 195 R A L V + GP +GG I+ HW + + +P+ + + L L +E R Sbjct: 137 RGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWS--YLLLIPMITIITVPFLMKLLKKEVR 194 Query: 196 TERRRIDAVGLALLVIGIGSLQIMLDRGKELDWFSSQEIIILTVVAVVAICFLIVWELTD 255 + D G+ L+ +GI + ML F++ I +V+V++ + Sbjct: 195 I-KGHFDIKGIILMSVGI--VFFML--------FTTSYSISFLIVSVLSFLIFVKHIRKV 243 Query: 256 DNPIVDLSLFKSRNFTIGCLCISLAYMLYFGAIVLLPQLLQEVYGYTATWAGLASAPVGI 315 +P VD L K+ F IG LC + + G + ++P ++++V+ + G G Sbjct: 244 TDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGT 303 Query: 316 IPVILS-PIIGRFAHKLDMRRLVTFSFIMYAVCFYWRAYTFEPGMDFGASAWPQFIQGF- 373 + VI+ I G + ++ +V F ++ S + I F Sbjct: 304 MSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFL-----LETTSWFMTIIIVFV 358 Query: 374 --AVACFFMPLTTITLSGLPPERLAAASSLSNFTRTLAGSIGTSI 416 ++ ++TI S L + A SL NFT L+ G +I Sbjct: 359 LGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAI 403
>LUXSPROTEIN#Bacterial autoinducer-2 (AI-2) production protein LuxS signature. Length = 171 Score = 293 bits (751), Expect = e-105 Identities = 132/170 (77%), Positives = 148/170 (87%) Query: 2 PLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFA 61 PLLDSFTVDHTRM APAVRVAKTM TP GD ITVFDLRF PNK+++ E+GIHTLEHL+A Sbjct: 1 PLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYA 60 Query: 62 GFMRNHLNGNGVEIIDISPMGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIP 121 GFMRNHLNG+ VEIIDISPMGCRTGFYMSLIGTP EQ+VADAW AAMEDVLKV++QN+IP Sbjct: 61 GFMRNHLNGDSVEIIDISPMGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVENQNKIP 120 Query: 122 ELNVYQCGTYQMHSLQEAQDIARNILERDVRINSNEELALPKEKLQELHI 171 ELN YQCGT MHSL EA+ IA+NILE V +N N+ELALP+ L+EL I Sbjct: 121 ELNEYQCGTAAMHSLDEAKQIAKNILEVGVAVNKNDELALPESMLRELRI 170
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 217 bits (554), Expect = 3e-76 Identities = 90/146 (61%), Positives = 109/146 (74%), Gaps = 3/146 (2%) Query: 6 RTQKPRAGFTLLEVMVVIVILGVLASLVVPNLLGNKEKADRQKAISDIVALENALDMYRL 65 R + GFTLLE+MVVIVI+GVLASLVVPNL+GNKEKAD+QKA+SDIVALENALDMY+L Sbjct: 2 RATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKL 61 Query: 66 DNGRYPTTEQGLEALIQQPANMADSRNYRTGGYIKRLPKDPWGNDYQYLSPGEKGLFDVY 125 DN YPTT QGLE+L++ P + NY GYIKRLP DPWGNDY ++PGE G +D+ Sbjct: 62 DNHHYPTTNQGLESLVEAPTLPPLAANYNKEGYIKRLPADPWGNDYVLVNPGEHGAYDLL 121 Query: 126 TLGADGQENGEGAGADIGNWNLQEFQ 151 + G DG+ E DI NW L + + Sbjct: 122 SAGPDGEMGTED---DITNWGLSKKK 144
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 453 bits (1166), Expect = e-161 Identities = 224/406 (55%), Positives = 299/406 (73%), Gaps = 1/406 (0%) Query: 1 MALFYYQALERNGRKTKGMIEADSARHARQLLRGKDLIPVHI-EARMNALAGGMLQRRRH 59 MA ++YQAL+ G+K +G EADSAR ARQLLR + L+P+ + E R + G Sbjct: 1 MAQYHYQALDAQGKKCRGTQEADSARQARQLLRERGLVPLSVDENRGDQQKSGSTGLSLR 60 Query: 60 AHRRVAAADLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTL 119 R++ +DLAL TRQLATLV A+MPLE L AV++QSEK H+ L A+RS++ EG++L Sbjct: 61 RKIRLSTSDLALLTRQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSL 120 Query: 120 SDSLREHPRVFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLL 179 +D+++ P F+ L+C+MVAAGE SGHLD VLNRLADYTEQRQ+++SR+ QAM+YP VL Sbjct: 121 ADAMKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVLT 180 Query: 180 VVATGVVTILLTAVVPKIIEQFDHLGHALPASTRMLIAMSDTLQASGVYWLAGLLGLLVL 239 VVA VV+ILL+ VVPK++EQF H+ ALP STR+L+ MSD ++ G + L LL + Sbjct: 181 VVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLALLAGFMA 240 Query: 240 GQRLLKNPAMRLRWDKTLLRLPVTGRVARGLNTARFSRTLSILTASSVPLLEGIQTAAAV 299 + +L+ R+ + + LL LP+ GR+ARGLNTAR++RTLSIL AS+VPLL+ ++ + V Sbjct: 241 FRVMLRQEKRRVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAMRISGDV 300 Query: 300 SANRYVEQQLLLAADRVREGSSLRAALADLRLFPPMMLYMIASGEQSGELETMLEQAAVN 359 +N Y +L LA D VREG SL AL LFPPMM +MIASGE+SGEL++MLE+AA N Sbjct: 301 MSNDYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMIASGERSGELDSMLERAADN 360 Query: 360 QEREFDTQVGLALGLFEPALVVMMAGVVLFIVIAILEPMLQLNNMV 405 Q+REF +Q+ LALGLFEP LVV MA VVLFIV+AIL+P+LQLN ++ Sbjct: 361 QDREFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPILQLNTLM 406
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 576 bits (1487), Expect = 0.0 Identities = 295/668 (44%), Positives = 430/668 (64%), Gaps = 34/668 (5%) Query: 24 LLPLMLAAALCSSPVWAEEATFTANFKDTDLKSFIETVGANLNKTIIMGPGVQGKVSIRT 83 L L++ AAL P AEE F+A+FK TD++ FI TV NLNKT+I+ P V+G +++R+ Sbjct: 11 SLTLLIFAALLFRPAAAEE--FSASFKGTDIQEFINTVSKNLNKTVIIDPSVRGTITVRS 68 Query: 84 MTPLNERQYYQLFLNLLEAQGYAVVPMENDVLKVVKSSAAKVEPLPLVGEGSDNYAGDEM 143 LNE QYYQ FL++L+ G+AV+ M N VLKVV+S AK +P+ + + GDE+ Sbjct: 69 YDMLNEEQYYQFFLSVLDVYGFAVINMNNGVLKVVRSKDAKTAAVPVASDAAPG-IGDEV 127 Query: 144 VTKVVPVRNVSVRELAPILRQMIDSAGSGNVVNYDPSNVIMLTGRASVVERLTEVIQRVD 203 VT+VVP+ NV+ R+LAP+LRQ+ D+AG G+VV+Y+PSNV+++TGRA+V++RL +++RVD Sbjct: 128 VTRVVPLTNVAARDLAPLLRQLNDNAGVGSVVHYEPSNVLLMTGRAAVIKRLLTIVERVD 187 Query: 204 HAGNRTEEVIPLDNASASEIARVLESLTKNSGENQ-PATLKSQIVADERTNSVIVSGDPA 262 +AG+R+ +PL ASA+++ +++ L K++ ++ P ++ + +VADERTN+V+VSG+P Sbjct: 188 NAGDRSVVTVPLSWASAADVVKLVTELNKDTSKSALPGSMVANVVADERTNAVLVSGEPN 247 Query: 263 TRDKMRRLIRRLDSEMERSGNSQVFYLKYSKAEDLVDVLKQVSGTLTAAKEEAEGTVGSG 322 +R ++ +I++LD + GN++V YLKY+KA DLV+VL +S T+ + K+ A+ + Sbjct: 248 SRQRIIAMIKQLDRQQATQGNTKVIYLKYAKASDLVEVLTGISSTMQSEKQAAKPV-AAL 306 Query: 323 REVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIRRAQVHVEALIVEVAEGSNINFGV 382 + + I A +NALIVTA D+M L+ VI QLDIRR QV VEA+I EV + +N G+ Sbjct: 307 DKNIIIKAHGQTNALIVTAAPDVMNDLERVIAQLDIRRPQVLVEAIIAEVQDADGLNLGI 366 Query: 383 QWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTNGDLST-LA 441 QW +K+AG+ QF N + +PI T A + +G +S+ LA Sbjct: 367 QWANKNAGMTQFTN-SGLPISTAIAG-------------------ANQYNKDGTVSSSLA 406 Query: 442 QLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQDVPVLTG 501 LS F+G A G +G+W L+ A+ + + +++L+TPSI TLDN EA F VGQ+VPVLTG Sbjct: 407 SALSSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMEATFNVGQEVPVLTG 466 Query: 502 STVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTS-----LDVV 556 S S N FNTVERK VGI LKV PQINEG++V + IEQEVS V S L Sbjct: 467 SQTTSG-DNIFNTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSTSSDLGAT 525 Query: 557 FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNL 616 F R + VL GE +V+GGL+D ++ KVPLLGDIP+IG LF+ST+ K KRNL Sbjct: 526 FNTRTVNNAVLVGSGETVVVGGLLDKSVSDTADKVPLLGDIPVIGALFRSTSKKVSKRNL 585 Query: 617 MVFIRPTILRDGMAADGVSQRKYNYMRAEQIYR--DEQGLSLMPHTAQPILPAQNQALPP 674 M+FIRPT++RD S +Y Q + E +++ I P Q+ A Sbjct: 586 MLFIRPTVIRDRDEYRQASSGQYTAFNDAQSKQRGKENNDAMLNQDLLEIYPRQDTAAFR 645 Query: 675 EVRAFLNA 682 +V A ++A Sbjct: 646 QVSAAIDA 653
>BCTERIALGSPC#Bacterial general secretion pathway protein C signature. Length = 272 Score = 123 bits (311), Expect = 1e-35 Identities = 73/287 (25%), Positives = 119/287 (41%), Gaps = 40/287 (13%) Query: 40 IARAMFWLMLLIISAKIAYSLWRYFSFSAEYTA-VSSSANKPLRADAKPFDKNDVQLVSQ 98 I R +F+L++L+ ++A WR A VSS P +A +P ND L Sbjct: 14 IRRILFYLLMLLFCQQLAMIFWR---IGLPDNAPVSSVQITPAQARQQPVTLNDFTL--- 67 Query: 99 QNWFGKY-QPVAAPV-KQPESAPVAETRLNVVLRGIAFG---ARPGAVIEEGGKQQVYLQ 153 FG + A + + + + LN+ L G+ G +R A+I + +Q Sbjct: 68 ---FGVSPEKNKAGALDASQMSNLPPSTLNLSLTGVMAGDDDSRSIAIISKDNEQFSRGV 124 Query: 154 GERLGSHNAVIEEINRDHVMLRYQGKIERLSLAEEERSTVAVTNKKSISDEAKQAVAEPV 213 E + +NA I I D V+L+YQG+ E L L +E S Sbjct: 125 NEEVPGYNAKIVSIRPDRVVLQYQGRYEVLGLYSQEDS---------------------- 162 Query: 214 VSAPVEIPAAVRQAL-AKDPQKIFNYIQLTPVRKEG-IVGYAVKPGADRSLFDASGFKEG 271 + A V + L + + +Y+ +P+ + + GY + PG F G ++ Sbjct: 163 -GSDGVPGAQVNEQLQQRASTTMSDYVSFSPIMNDNKLQGYRLNPGPKSDSFYRVGLQDN 221 Query: 272 DIAIALNQQDFTDPRAMIALMRQLPSMDSIQLTVLRKGARYDISIAL 318 D+A+ALN D D M ++ + + LTV R G R DI + Sbjct: 222 DMAVALNGLDLRDAEQAKKAMERMADVHNFTLTVERDGQRQDIYMEF 268
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 275 bits (705), Expect = 4e-95 Identities = 108/271 (39%), Positives = 147/271 (54%), Gaps = 12/271 (4%) Query: 1 MHFDVFQQYPAAMPILATVGGLIIGSFLNVVIWRYPIML-RQQMAEFHGETPSTQSKI-- 57 + ++ P L + L+IGSFLNVVI R PIML R+ AE+ + Sbjct: 3 LLLELAHGLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRSYFNPDDEGVDE 62 Query: 58 ---SLALPRSHCPHCQQTIRVRDNIPLLSWLMLKGRCRDCQAKISKRYPLVELLTALAFL 114 +L +PRS CPHC I +NIPLLSWL L+GRCR CQA IS RYPLVELLTAL + Sbjct: 63 PPYNLMVPRSCCPHCNHPITALENIPLLSWLWLRGRCRGCQAPISARYPLVELLTALLSV 122 Query: 115 LASLVWPESGWGLAVMILSAWLITASIIDLDNQWLPDVFTQGVLWTGLIAAWAQQSPLTL 174 ++ LA ++L+ L+ + IDLD LPD T +LW GL+ ++L Sbjct: 123 AVAMTLAPGWGTLAALLLTWVLVALTFIDLDKMLLPDQLTLPLLWGGLLFNL-LGGFVSL 181 Query: 175 QDAVTGVLVGFITFYSLRWIAGIVLRKEALGMGDVLLFAALGGWVGPLSLPNVALIASCC 234 DAV G + G++ +SL W ++ KE +G GD L AALG W+G +LP V L++S Sbjct: 182 GDAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSLV 241 Query: 235 GLIYAVI-----TKRGSTTLPFGPCLSLGGI 260 G + S +PFGP L++ G Sbjct: 242 GAFMGIGLILLRNHHQSKPIPFGPYLAIAGW 272
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 47.3 bits (112), Expect = 2e-07 Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 1/45 (2%) Query: 46 PDVKPDPTPNPEPTPEPTPDPEPTPDPTPDPEPTPEPEPEPVPTK 90 V+P P P EP PEP P PEP P P P+P+P+P P Sbjct: 59 QAVQPPPEPVVEPEPEPEPIPEP-PKEAPVVIEKPKPKPKPKPKP 102 Score = 42.3 bits (99), Expect = 7e-06 Identities = 25/109 (22%), Positives = 38/109 (34%), Gaps = 4/109 (3%) Query: 47 DVKPDPTPNPEPTPEPTPDPEPTPDPTPDPE-PTPEPEPEPVPTKTGYLTLGGSQRVTGA 105 D++P P P P P+PEP P P P E P +P+P P ++ Sbjct: 54 DLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRD 113 Query: 106 TCNGESSDGFTF---TPGKDVTCVAGNTTIATFNTQSEAARSLRAVEKV 151 ES F P + + A T + + R+L + Sbjct: 114 VKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRALSRNQPQ 162 Score = 41.9 bits (98), Expect = 1e-05 Identities = 11/47 (23%), Positives = 20/47 (42%) Query: 46 PDVKPDPTPNPEPTPEPTPDPEPTPDPTPDPEPTPEPEPEPVPTKTG 92 + P P +P P P+P P P + P+ + +PV ++ Sbjct: 76 EPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPA 122 Score = 40.4 bits (94), Expect = 3e-05 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%) Query: 46 PDVKPDPTPNPEPTPEPTPDPEPTPDPTPDPEPTPEPEPEPVP 88 P P P P PEP P+P P P P +P+P+P P Sbjct: 57 PPQAVQPPPEPVVEPEPEPEPIP-EPPKEAPVVIEKPKPKPKP 98 Score = 40.4 bits (94), Expect = 3e-05 Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 5/52 (9%) Query: 46 PDVKPDPTPNPEPTPEP-----TPDPEPTPDPTPDPEPTPEPEPEPVPTKTG 92 P V+P+P P P P P P+P P P P P + +P+ Sbjct: 67 PVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVE 118 Score = 37.3 bits (86), Expect = 3e-04 Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 2/37 (5%) Query: 53 TPNPEPTPEPTPDPEPTPDPTPDPEPTPEPE-PEPVP 88 TP P+ P P+PEP P PE P+ P Sbjct: 51 TPADLEPPQAVQPPPEPVVE-PEPEPEPIPEPPKEAP 86 Score = 36.5 bits (84), Expect = 5e-04 Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 2/43 (4%) Query: 48 VKPDPTPNPEPTPEPTPDPEPTPDPTPDPEPTPEPEPEPVPTK 90 V P P+ P P+P P+P P P+ PV + Sbjct: 50 VTPADLEPPQAVQPPPEPVVE-PEPEPEPIP-EPPKEAPVVIE 90 Score = 35.7 bits (82), Expect = 9e-04 Identities = 11/44 (25%), Positives = 14/44 (31%) Query: 45 LPDVKPDPTPNPEPTPEPTPDPEPTPDPTPDPEPTPEPEPEPVP 88 P P P+P P+P P P P + P P Sbjct: 81 PPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASP 124
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 72.7 bits (178), Expect = 3e-16 Identities = 30/184 (16%), Positives = 63/184 (34%), Gaps = 38/184 (20%) Query: 90 GLGSGVIINANKGYVLTNNHVINQAQKISIQL------------NDGREFDAKLIGSDDQ 137 + SGV++ + +LTN HV++ L +G ++ + Sbjct: 102 FIASGVVVGKDT--LLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGE 159 Query: 138 SDIALLQIQN-------PSKLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIISALG 190 D+A+++ + ++++ + +V G P ++ + Sbjct: 160 GDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYPGDKP-------VATMW 212 Query: 191 RSGLNLEGLEN-FIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSN 249 S + L+ +Q D S GNSG + N E+IGI+ G+ Sbjct: 213 ESKGKITYLKGEAMQYDLSTTGGNSGSPVFNEKNEVIGIHWG---------GVPNEFNGA 263 Query: 250 MART 253 + Sbjct: 264 VFIN 267
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 53.1 bits (127), Expect = 6e-10 Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 26/160 (16%) Query: 77 RTLGSGVIMDQRGYIITNKHVINDADQIIVALQ------------DGRVFEALLVGSDSL 124 + SGV++ + ++TNKHV++ AL+ +G + Sbjct: 101 TFIASGVVVG-KDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGE 159 Query: 125 TDLAVLKINATGGLPTIP--INPRRVPH-----IGDVVLAIGNPYNLGQTITQGIISATG 177 DLA++K + I + P + + + + G P + T + G Sbjct: 160 GDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYPGD-KPVATMW--ESKG 216 Query: 178 RIGLNPTGRQNFLQTDASINHGNSGGALVNSLGELMGINT 217 +I + +Q D S GNSG + N E++GI+ Sbjct: 217 KI---TYLKGEAMQYDLSTTGGNSGSPVFNEKNEVIGIHW 253
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 28.1 bits (62), Expect = 0.045 Identities = 37/167 (22%), Positives = 61/167 (36%), Gaps = 27/167 (16%) Query: 3 VAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGED 62 + GAA GIG+A+A L G+ ++ D P V S A + F + Sbjct: 11 AFITGAAQGIGEAVARTL---ASQGAHIAAVDYNP-EKLEKVVSSLKAEARHAEAFPADV 66 Query: 63 ATPA------------LEGADVVLISAGVARK------PGMDRSDLFNVNAGIVKNLVQQ 104 A + D+++ AGV R + F+VN+ V N + Sbjct: 67 RDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRS 126 Query: 105 VAKTCPK----ACIGIITNPVNTT-VAIAAEVLKKAGVYDKNKLFGV 146 V+K + + + +NP ++AA KA K G+ Sbjct: 127 VSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGL 173
>ARGREPRESSOR#Bacterial arginine repressor signature. Length = 149 Score = 168 bits (428), Expect = 9e-57 Identities = 44/141 (31%), Positives = 71/141 (50%), Gaps = 5/141 (3%) Query: 15 KALLKEEKFSSQGEIVAALQEQGFDNINQSKVSRMLTKFGAVRTRNAKMEMVYCLPAELG 74 + ++ + +Q E+V L++ G+ N+ Q+ VSR + + V+ Y LPA+ Sbjct: 11 REIITANEIETQDELVDILKKDGY-NVTQATVSRDIKELHLVKVPTNNGSYKYSLPADQR 69 Query: 75 VPTTSSPLKNLV---LDIDYNDAVVVIHTSPGAAQLIARLLDSLGKAEGILGTIAGDDTI 131 S ++L+ + ID ++V+ T PG AQ I L+D+L E I+GTI GDDTI Sbjct: 70 FNPLSKLKRSLMDAFVKIDSASHLIVLKTMPGNAQAIGALMDNLDWEE-IMGTICGDDTI 128 Query: 132 FTTPANGFTVKELYEAILELF 152 K + + ILEL Sbjct: 129 LIICRTHDDTKVVQKKILELL 149
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 54.4 bits (131), Expect = 2e-10 Identities = 29/163 (17%), Positives = 59/163 (36%), Gaps = 16/163 (9%) Query: 6 RKFSRTAITVVLVILAFIAIFNAWVYYTE----SPWTRDARFSADVVAIAPDVSGLITQV 61 SR V I+ F+ I + + S I P + ++ ++ Sbjct: 51 TPVSRRPRLVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEI 110 Query: 62 NVHDNQLVKKGQVLFTIDQPR-------YQKALEEAQADVAYYQVLAQEKRQEAGRRNRL 114 V + + V+KG VL + Q +L +A+ + YQ+L++ E + L Sbjct: 111 IVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRS--IELNKLPEL 168 Query: 115 GVQAMSREEIDQANNVL---QTVLHQLAKAQATRDLAKLDLER 154 + + VL + Q + Q + +L+L++ Sbjct: 169 KLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDK 211 Score = 51.4 bits (123), Expect = 2e-09 Identities = 28/147 (19%), Positives = 54/147 (36%), Gaps = 15/147 (10%) Query: 100 LAQEKRQEAGRRNRLGVQ-AMSREEIDQANNVLQT-VLHQLAKAQAT-------RDLAKL 150 E R + ++ + ++EE + + +L +L + + Sbjct: 264 AVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEE 323 Query: 151 DLERTVIRAPADGWVTNLNVYT-GEFITRGSTAVALVKQNSFY-VLAYMEETKLEGVRPG 208 + +VIRAP V L V+T G +T T + +V ++ V A ++ + + G Sbjct: 324 RQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVG 383 Query: 209 YRAEIT----PLGSNKVLKGTVDSVAA 231 A I P L G V ++ Sbjct: 384 QNAIIKVEAFPYTRYGYLVGKVKNINL 410
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 28.4 bits (63), Expect = 0.043 Identities = 12/72 (16%), Positives = 20/72 (27%), Gaps = 3/72 (4%) Query: 296 MMPQVLPSPDAMGPKLPEPATGITQPTPQQPATGNAVTAPAAPTQPAANRSPQRATPPQS 355 P+ +P P P + E +P P+ V P +P +R Sbjct: 78 PEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVK---KVEQPKRDVKPVESRPASPFENTAP 134 Query: 356 GAQPPARAPGGQ 367 + A Sbjct: 135 ARPTSSTATAAT 146
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 576 bits (1487), Expect = 0.0 Identities = 347/347 (100%), Positives = 347/347 (100%) Query: 1 MLKKFRGMFSNDLSIDLGTANTLIYVKGQGIVLNEPSVVAIRQDRAGSPKSVAAVGHDAK 60 MLKKFRGMFSNDLSIDLGTANTLIYVKGQGIVLNEPSVVAIRQDRAGSPKSVAAVGHDAK Sbjct: 1 MLKKFRGMFSNDLSIDLGTANTLIYVKGQGIVLNEPSVVAIRQDRAGSPKSVAAVGHDAK 60 Query: 61 QMLGRTPGNIAAIRPMKDGVIADFFVTEKMLQHFIKQVHSNSFMRPSPRVLVCVPVGATQ 120 QMLGRTPGNIAAIRPMKDGVIADFFVTEKMLQHFIKQVHSNSFMRPSPRVLVCVPVGATQ Sbjct: 61 QMLGRTPGNIAAIRPMKDGVIADFFVTEKMLQHFIKQVHSNSFMRPSPRVLVCVPVGATQ 120 Query: 121 VERRAIRESAQGAGAREVFLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNG 180 VERRAIRESAQGAGAREVFLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNG Sbjct: 121 VERRAIRESAQGAGAREVFLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNG 180 Query: 181 VVYSSSVRIGGDRFDEAIINYVRRNYGSLIGEATAERIKHEIGSAYPGDEVREIEVRGRN 240 VVYSSSVRIGGDRFDEAIINYVRRNYGSLIGEATAERIKHEIGSAYPGDEVREIEVRGRN Sbjct: 181 VVYSSSVRIGGDRFDEAIINYVRRNYGSLIGEATAERIKHEIGSAYPGDEVREIEVRGRN 240 Query: 241 LAEGVPRGFTLNSNEILEALQEPLTGIVSAVMVALEQCPPELASDISERGMVLTGGGALL 300 LAEGVPRGFTLNSNEILEALQEPLTGIVSAVMVALEQCPPELASDISERGMVLTGGGALL Sbjct: 241 LAEGVPRGFTLNSNEILEALQEPLTGIVSAVMVALEQCPPELASDISERGMVLTGGGALL 300 Query: 301 RNLDRLLMEETGIPVVVAEDPLTCVARGGGKALEMIDMHGGDLFSEE 347 RNLDRLLMEETGIPVVVAEDPLTCVARGGGKALEMIDMHGGDLFSEE Sbjct: 301 RNLDRLLMEETGIPVVVAEDPLTCVARGGGKALEMIDMHGGDLFSEE 347
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 29.4 bits (66), Expect = 0.017 Identities = 11/28 (39%), Positives = 17/28 (60%) Query: 150 IVVTGASGGVGSTAVALLHKLGYQVVAV 177 +VTGA+G +G L + G+QVV + Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVGI 30
>DNABINDNGFIS#DNA-binding protein FIS signature. Length = 98 Score = 157 bits (399), Expect = 3e-54 Identities = 98/98 (100%), Positives = 98/98 (100%) Query: 1 MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQ 60 MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQ Sbjct: 1 MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQ 60 Query: 61 PLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 PLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN Sbjct: 61 PLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 127 bits (321), Expect = 7e-39 Identities = 77/209 (36%), Positives = 122/209 (58%), Gaps = 3/209 (1%) Query: 1 MAKRTKAEALKTRQELIETAIAQFAQHGVSKTTLNDIADAANVTRGAIYWHFENKTQLFN 60 MA++TK EA +TRQ +++ A+ F+Q GVS T+L +IA AA VTRGAIYWHF++K+ LF+ Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60 Query: 61 EMW-LQQPSLRELIQDHLTAGLEHDPFQQLREKLIVGLQYIAKIPRQQALLKILYHKCEF 119 E+W L + ++ EL + A DP LRE LI L+ R++ L++I++HKCEF Sbjct: 61 EIWELSESNIGELELE-YQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEF 119 Query: 120 NDEM-LAEGVIREKMGFNPQTLREVLQACQQQGCVANNLDLDVVMIIIDGAFSGIVQNWL 178 EM + + R + + + L+ C + + +L II+ G SG+++NWL Sbjct: 120 VGEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWL 179 Query: 179 MNMAGYDLYKQAPALVDNVLRMFMPDENI 207 +DL K+A V +L M++ + Sbjct: 180 FAPQSFDLKKEARDYVAILLEMYLLCPTL 208
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 43.3 bits (102), Expect = 1e-06 Identities = 38/217 (17%), Positives = 70/217 (32%), Gaps = 38/217 (17%) Query: 98 ATYQASYDSAKGELAKSEAAAAIAHLTVKRYVPLVGTKYISQQEYDQAIADA-RQADAAV 156 K +L + E+ A + Q + I D RQ + Sbjct: 262 VEAVNELRVYKSQLEQIESEILSAKEEYQLV----------TQLFKNEILDKLRQTTDNI 311 Query: 157 IAAKATVESARINLAYTKVTAPISGRIGK-STVTEGALVTNGQTTELATVQQLDPIYVDV 215 + + + AP+S ++ + TEG +VT +T + V + D + V Sbjct: 312 GLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETL-MVIVPEDDTLEVTA 370 Query: 216 TQSSND--FMRLKQSVEQGNLHKENATSNVELVMENGQTYP-LKGTLQ--FSDVTVDEST 270 + D F+ + Q+ +++ Y L G ++ D D+ Sbjct: 371 LVQNKDIGFINVGQNAI------------IKVEAFPYTRYGYLVGKVKNINLDAIEDQRL 418 Query: 271 GSIT--LRAV------FPNPQHTLLPGMFVRARIDEG 299 G + + ++ N L GM V A I G Sbjct: 419 GLVFNVIISIEENCLSTGNKNIPLSSGMAVTAEIKTG 455 Score = 34.4 bits (79), Expect = 7e-04 Identities = 22/127 (17%), Positives = 43/127 (33%), Gaps = 13/127 (10%) Query: 46 TAPLEVKTELPGR-TNAYRIAEVRPQVSGIVLNRNFTEGSDVQAGQSLYQIDPATYQASY 104 +E+ G+ T++ R E++P + IV EG V+ G L ++ +A Sbjct: 77 LGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEA-- 134 Query: 105 DSAKGELAKSEAAAAIAHLTVKRYVPLVGTKYISQQEYDQAIADARQADAAVIAAKATVE 164 + K++++ A L RY L E ++ + Sbjct: 135 -----DTLKTQSSLLQARLEQTRYQIL-----SRSIELNKLPELKLPDEPYFQNVSEEEV 184 Query: 165 SARINLA 171 +L Sbjct: 185 LRLTSLI 191 Score = 29.0 bits (65), Expect = 0.031 Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%) Query: 65 AEVRPQVSGIVLNRN-FTEGSDVQAGQSLYQIDP 97 + +R VS V TEG V ++L I P Sbjct: 328 SVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVP 361
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1404 bits (3635), Expect = 0.0 Identities = 1028/1034 (99%), Positives = 1031/1034 (99%) Query: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 181 QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRL 240 QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR Sbjct: 181 QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240 Query: 241 KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300 KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL Sbjct: 241 KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300 Query: 301 DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIQEVVKTLFEAIMLVFLVMYLFLQ 360 DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSI EVVKTLFEAIMLVFLVMYLFLQ Sbjct: 301 DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360 Query: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 Query: 421 MEDKLPPREATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480 MEDKLPP+EATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL Sbjct: 421 MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480 Query: 481 SVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRY 540 SVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRY Sbjct: 481 SVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRY 540 Query: 541 LLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKN 600 LLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKN Sbjct: 541 LLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKN 600 Query: 601 EKANVESVFTVNGFSFSGQEQNAGMAFVSLKPWEERSGDENSAEAVIHRAKMELGKIRDG 660 EKANVESVFTVNGFSFSGQ QNAGMAFVSLKPWEER+GDENSAEAVIHRAKMELGKIRDG Sbjct: 601 EKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDG 660 Query: 661 FVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGL 720 FVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGL Sbjct: 661 FVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGL 720 Query: 721 EDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKVYVQADAKFRM 780 EDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKK+YVQADAKFRM Sbjct: 721 EDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRM 780 Query: 781 LPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAM 840 LPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAM Sbjct: 781 LPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAM 840 Query: 841 ALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSV 900 ALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSV Sbjct: 841 ALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSV 900 Query: 901 MLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVV 960 MLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVV Sbjct: 901 MLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVV 960 Query: 961 EATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFF 1020 EATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFF Sbjct: 961 EATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFF 1020 Query: 1021 VPVFFVVIRRCFKG 1034 VPVFFVVIRRCFKG Sbjct: 1021 VPVFFVVIRRCFKG 1034
>adhesinb#Adhesin B signature. Length = 310 Score = 27.5 bits (61), Expect = 0.004 Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 10/68 (14%) Query: 1 MKR---LIPVALLTALLAGCAHDSPCVPVYDDQGRLVHTNTCMKGTTQDNWETAGAIAGG 57 MK+ L+ + L LA C+ + +V TN+ + T++ IAG Sbjct: 1 MKKCRFLVLLLLAFVGLAACSSQKSSTETGSSKLNVVATNSIIADITKN-------IAGD 53 Query: 58 AAAVAGLT 65 + + Sbjct: 54 KINLHSIV 61
>BCTERIALGSPC#Bacterial general secretion pathway protein C signature. Length = 272 Score = 82.7 bits (204), Expect = 1e-20 Identities = 52/200 (26%), Positives = 93/200 (46%), Gaps = 15/200 (7%) Query: 59 EFSLAALWRNENHTGVKDANPVAVNQETPKLSIALNGIVLTSNDETSFVLINEGNEQKRY 118 +F+L + +N G DA N L+++L G++ +D S +I++ NEQ Sbjct: 64 DFTLFGVSPEKNKAGALDA-SQMSNLPPSTLNLSLTGVMAGDDDSRSIAIISKDNEQFSR 122 Query: 119 SLNEALESAPGT--FIRKINKTSVVFETHGHYEKVTLH-------PGLP--DIIKQPDSE 167 +NE + PG I I VV + G YE + L+ G+P + +Q Sbjct: 123 GVNEEV---PGYNAKIVSIRPDRVVLQYQGRYEVLGLYSQEDSGSDGVPGAQVNEQLQQR 179 Query: 168 NQNVLADYIIATPIRDGEQIYGLRLNPRKGLNAFTTSLLQPGDIALRINNLSLTHPDEIS 227 ++DY+ +PI + ++ G RLNP ++F LQ D+A+ +N L L ++ Sbjct: 180 ASTTMSDYVSFSPIMNDNKLQGYRLNPGPKSDSFYRVGLQDNDMAVALNGLDLRDAEQAK 239 Query: 228 QALSLLLTQQSAQFTIRRNG 247 +A+ + + T+ R+G Sbjct: 240 KAMERMADVHNFTLTVERDG 259
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 716 bits (1850), Expect = 0.0 Identities = 344/629 (54%), Positives = 466/629 (74%), Gaps = 11/629 (1%) Query: 7 ITCCLLAALLMPCAGHAENEQYGANFNNADIRQFVEIVGQHLGKTILIDPSVQGTISVRS 66 +T + AALL A E++ A+F DI++F+ V ++L KT++IDPSV+GTI+VRS Sbjct: 12 LTLLIFAALLF---RPAAAEEFSASFKGTDIQEFINTVSKNLNKTVIIDPSVRGTITVRS 68 Query: 67 NDTFSQQEYYQFFLSILDLYGYSVITLDNGFLKVVRSANVKTSPGMIADSSRPGVGDELV 126 D ++++YYQFFLS+LD+YG++VI ++NG LKVVRS + KT+ +A + PG+GDE+V Sbjct: 69 YDMLNEEQYYQFFLSVLDVYGFAVINMNNGVLKVVRSKDAKTAAVPVASDAAPGIGDEVV 128 Query: 127 TRIVPLENVPARDLAPLLRQMMDAGSVGNVVHYEPSNVLILTGRASTINKLIEVIKRVDV 186 TR+VPL NV ARDLAPLLRQ+ D VG+VVHYEPSNVL++TGRA+ I +L+ +++RVD Sbjct: 129 TRVVPLTNVAARDLAPLLRQLNDNAGVGSVVHYEPSNVLLMTGRAAVIKRLLTIVERVDN 188 Query: 187 IGTEKQQIIHLEYASAEDLAEILNQLISESHGKSQMPALLSAKIVADKRTNSLIISGPEK 246 G + L +ASA D+ +++ +L ++ KS +P + A +VAD+RTN++++SG Sbjct: 189 AGDRSVVTVPLSWASAADVVKLVTEL-NKDTSKSALPGSMVANVVADERTNAVLVSGEPN 247 Query: 247 ARQRITSLLKSLDVEESEEGNTRVYYLKYAKATNLVEVLTGVSEKLKDEKGNSRKPSSTS 306 +RQRI +++K LD +++ +GNT+V YLKYAKA++LVEVLTG+S ++ EK ++ + Sbjct: 248 SRQRIIAMIKQLDRQQATQGNTKVIYLKYAKASDLVEVLTGISSTMQSEKQAAK--PVAA 305 Query: 307 AMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIRRAQVLVEAIIVEVQDGNGLNLG 366 N+ I A QTN+L++TA V L VIA+LDIRR QVLVEAII EVQD +GLNLG Sbjct: 306 LDKNIIIKAHGQTNALIVTAAPDVMNDLERVIAQLDIRRPQVLVEAIIAEVQDADGLNLG 365 Query: 367 VQWANKNVGAQQFTNTGLPVFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGD 426 +QWANKN G QFTN+GLP+ A G Y K+G ++S+ S++NG+AAGF+ G+ Sbjct: 366 IQWANKNAGMTQFTNSGLPISTAIAGANQYNKDGTVSSSLA--SALSSFNGIAAGFYQGN 423 Query: 427 WGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKT 486 W +LLTAL+S+ KNDILATPSIVTLDN A+FNVGQ+VPVL+GSQTTSGDN+FNTVERKT Sbjct: 424 WAMLLTALSSSTKNDILATPSIVTLDNMEATFNVGQEVPVLTGSQTTSGDNIFNTVERKT 483 Query: 487 VGTKLKVTPQVNEGDAVLLEIEQEVSSVD---SSSNSTLGPTFNTRTIQNAVLVKTGETV 543 VG KLKV PQ+NEGD+VLLEIEQEVSSV SS++S LG TFNTRT+ NAVLV +GETV Sbjct: 484 VGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSTSSDLGATFNTRTVNNAVLVGSGETV 543 Query: 544 VLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIRDDDVYRSL 603 V+GGLLD + KVPLLGDIP++G LFR TS + +KRNLM+FIRPT+IRD D YR Sbjct: 544 VVGGLLDKSVSDTADKVPLLGDIPVIGALFRSTSKKVSKRNLMLFIRPTVIRDRDEYRQA 603 Query: 604 SKEKYTRYRQEQQLRIDGKSKALVGSEDL 632 S +YT + Q + ++ + ++DL Sbjct: 604 SSGQYTAFNDAQSKQRGKENNDAMLNQDL 632
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 513 bits (1323), Expect = 0.0 Identities = 195/405 (48%), Positives = 283/405 (69%), Gaps = 8/405 (1%) Query: 2 NYRYRAMTQDGQKLQGIIDANDERQARLRLREEGLFLLDIRPQK-------SSGVKTRRP 54 Y Y+A+ G+K +G +A+ RQAR LRE GL L + + S+G+ RR Sbjct: 3 QYHYQALDAQGKKCRGTQEADSARQARQLLRERGLVPLSVDENRGDQQKSGSTGLSLRRK 62 Query: 55 -RISHSELTLFTRQLATLSAAALPLEESLAVIGQQSSNKRLADVLNQVRSAILEGHPLSD 113 R+S S+L L TRQLATL AA++PLEE+L + +QS L+ ++ VRS ++EGH L+D Sbjct: 63 IRLSTSDLALLTRQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSLAD 122 Query: 114 ALQHFPTLFDSLYRTLVKAGEKSGLLAPVLEKLADYNENRQKIRSKLIQSLIYPCMLTTV 173 A++ FP F+ LY +V AGE SG L VL +LADY E RQ++RS++ Q++IYPC+LT V Sbjct: 123 AMKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVLTVV 182 Query: 174 AIVVVIILLTAVVPKITEQFVHMKQQLPLSTRILLGLSDTLQRTGPTLLATVFIVAVGFW 233 AI VV ILL+ VVPK+ EQF+HMKQ LPLSTR+L+G+SD ++ GP +L + + F Sbjct: 183 AIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLALLAGFMAFR 242 Query: 234 LWLKRGNNRHRFHAMLLRVALIGPLICAINSARYLRTLSILQSSGVPLLDGMNLSTESLN 293 + L++ R FH LL + LIG + +N+ARY RTLSIL +S VPLL M +S + ++ Sbjct: 243 VMLRQEKRRVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAMRISGDVMS 302 Query: 294 NLEIRQRLANAAENVRQGNSIHLSLEQTAIFPPMMLYMVASGEKSGQLGTLMVRAADNQE 353 N R RL+ A + VR+G S+H +LEQTA+FPPMM +M+ASGE+SG+L +++ RAADNQ+ Sbjct: 303 NDYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMIASGERSGELDSMLERAADNQD 362 Query: 354 TLQQNRIALTLSIFEPALIITMALIVLFIVVSVLQPLLQLNSMIN 398 +++ L L +FEP L+++MA +VLFIV+++LQP+LQLN++++ Sbjct: 363 REFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPILQLNTLMS 407
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 249 bits (636), Expect = 1e-88 Identities = 144/145 (99%), Positives = 144/145 (99%) Query: 1 MRATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYK 60 MRATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYK Sbjct: 1 MRATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYK 60 Query: 61 LDNHRYPTTNQGLESLVEAPTLPPLAANYNKEGYIKRLPADPWGNDYVLVNPGEHGAYDL 120 LDNH YPTTNQGLESLVEAPTLPPLAANYNKEGYIKRLPADPWGNDYVLVNPGEHGAYDL Sbjct: 61 LDNHHYPTTNQGLESLVEAPTLPPLAANYNKEGYIKRLPADPWGNDYVLVNPGEHGAYDL 120 Query: 121 LSAGPDGEMGTEDDITNWGLSKKKK 145 LSAGPDGEMGTEDDITNWGLSKKKK Sbjct: 121 LSAGPDGEMGTEDDITNWGLSKKKK 145
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 140 bits (354), Expect = 4e-45 Identities = 49/153 (32%), Positives = 75/153 (49%), Gaps = 18/153 (11%) Query: 3 QQRGFTLLEMMLVLALVAITASVVLFTYGREDAASTRARETAARFTAALELAIDRATLSG 62 +QRGFTLLEMML+L L+ ++A +VL + + A +T ARF A L R +G Sbjct: 2 RQRGFTLLEMMLILLLMGVSAGMVLLAFP--ASRDDSAAQTLARFEAQLRFVQQRGLQTG 59 Query: 63 QPVGIHFSDSAWRIMV----PGKTP-------SAWRWVPLQEDAADESKNDWGEELSIQL 111 Q G+ W+ +V G P S +RW+PL+ S + G +L++ Sbjct: 60 QFFGVSVHPDRWQFLVLEARDGADPAPADDGWSGYRWLPLRAGRVATSGSIAGGKLNLAF 119 Query: 112 ---QPFKPDDSNQPQVVILADGQITPFSLLMAN 141 + + P D P V+I G++TPF L + Sbjct: 120 AQGEAWTPGD--NPDVLIFPGGEMTPFRLTLGE 150
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 31.0 bits (70), Expect = 6e-04 Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 8/90 (8%) Query: 1 MNKQSGMTLLEVLLAMSIFTAVALTLMSSMQGQ--RTAIERMRNETLALWIADNQLQSQD 58 +KQ G TLLE+++ + I +A ++ ++ G + ++ ++ +AL A + + D Sbjct: 4 TDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYK-LD 62 Query: 59 SFDEENTSSSGKELING-----EEWNWRSD 83 + T+ + L+ N+ + Sbjct: 63 NHHYPTTNQGLESLVEAPTLPPLAANYNKE 92
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 33.8 bits (77), Expect = 2e-04 Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 2/47 (4%) Query: 4 RQQGFTLLEVMAALAIFSMLSVLAFMIFSQASELHQRSQKEIQQFNQ 50 RQ+GFTLLE+M L + + + + + F + + + + + +F Sbjct: 2 RQRGFTLLEMMLILLLMGVSAGMVLLAFPASRD--DSAAQTLARFEA 46
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 156 bits (396), Expect = 3e-49 Identities = 76/166 (45%), Positives = 98/166 (59%), Gaps = 2/166 (1%) Query: 55 VPLILCVAAAIACALAPFTPIVTGALFLYFCFALTLSVIDFRTQLLPDKLTLPLLWLGLV 114 V L+ + + AL L + + L+ ID LLPD+LTLPLLW GL+ Sbjct: 113 VELLTALLSVAVAMTLAPGWGTLAALLLTWVL-VALTFIDLDKMLLPDQLTLPLLWGGLL 171 Query: 115 FNAQSGLIDLHDAVYGAVAGYGVLWCVYWGVWLVCHKEGLGYGDFKLLAAAGAWCGWQTL 174 FN G + L DAV GA+AGY VLW +YW L+ KEG+GYGDFKLLAA GAW GWQ L Sbjct: 172 FNLLGGFVSLGDAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQAL 231 Query: 175 PMILLIASLGGIGYAIVSQLLQRRTITT-IAFGPWLALGSMINLGY 219 P++LL++SL G I LL+ + I FGP+LA+ I L + Sbjct: 232 PIVLLLSSLVGAFMGIGLILLRNHHQSKPIPFGPYLAIAGWIALLW 277
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 35.2 bits (81), Expect = 3e-05 Identities = 28/150 (18%), Positives = 59/150 (39%), Gaps = 24/150 (16%) Query: 5 TKVINYLNKLLGNE---LVAINQYFLHARMFKNWGLKRLNDVEYHESIDEM-----KHAD 56 T V N LN L N ++++ +W +K + HE +E+ + D Sbjct: 11 TLVENSLNTQLSNWFLLYSKLHRF--------HWYVKGPHFFTLHEKFEELYDHAAETVD 62 Query: 57 RYIERILFLEGLPN--LQDLGKL------NIGEDVEEMLRSDLALELDGAKNLREAIGYA 108 ER+L + G P +++ + EM+++ + + + IG A Sbjct: 63 TIAERLLAIGGQPVATVKEYTEHASITDGGNETSASEMVQALVNDYKQISSESKFVIGLA 122 Query: 109 DSVHDYVSRDMMIEILRDEEGHIDWLETEL 138 + D + D+ + ++ + E + L + L Sbjct: 123 EENQDNATADLFVGLIEEVEKQVWMLSSYL 152
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 79.5 bits (196), Expect = 3e-18 Identities = 57/198 (28%), Positives = 87/198 (43%), Gaps = 13/198 (6%) Query: 13 VNVGTIGHVDHGKTTLTAAI------TTVLAKTYGGAARAFDQIDNAPEEKARGITINTS 66 +N+G + HVD GKTTLT ++ T L G R DN E+ RGITI T Sbjct: 4 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRT----DNTLLERQRGITIQTG 59 Query: 67 HVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQV 126 + +D PGH D++ + + +DGAIL+++A DG QTR R++ Sbjct: 60 ITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKM 119 Query: 127 GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWE 186 G+P I F+NK D + L V +++E LS + + +W+ Sbjct: 120 GIP-TIFFINKIDQNGID--LSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWD 176 Query: 187 AKILELAGFLDSYIPEPE 204 I L+ Y+ Sbjct: 177 TVIEGNDDLLEKYMSGKS 194
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 613 bits (1583), Expect = 0.0 Identities = 178/698 (25%), Positives = 304/698 (43%), Gaps = 81/698 (11%) Query: 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAAT 68 + NIG+ AH+DAGKTT TE +L+ +G ++G V G D E++RGITI + T Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 69 TAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWR 128 + W ++NIIDTPGH+DF EV RS+ VLDGA+++ A GVQ Q+ ++ Sbjct: 62 SFQWEN-------TKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFH 114 Query: 129 QANKYKVPRIAFVNKMDRMGANFLKVVNQIKTRLGANPVPLQLAIGAEEHFTGVVDLVKM 188 K +P I F+NK+D+ G + V IK +L A V Q V M Sbjct: 115 ALRKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQ----------KVELYPNM 164 Query: 189 KAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYLGGEELTEAEI 248 N+ +++Q ++ E +++L+EKY+ G+ L E+ Sbjct: 165 CVTNFTESEQ------------------------WDTVIEGNDDLLEKYMSGKSLEALEL 200 Query: 249 KGALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYLPSPVDVPAINGILDDGKDTPAE 308 + R N + V GSA N G+ +++ + + S Sbjct: 201 EQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSSTH----------------- 243 Query: 309 RHASDDEPFSALAFKIATDPFVGNLTFFRVYSGVVNSGDTVLNSVKAARERFGRIVQMHA 368 FKI L + R+YSGV++ D+V S K + + + Sbjct: 244 ---RGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEK-EKIKITEMYTSIN 299 Query: 369 NKREEIKEVRAGDIAAAIG----LKDVTTGDTLCDPDAPIILERMEFPEPVISIAVEPKT 424 + +I + +G+I L V GDT P ER+E P P++ VEP Sbjct: 300 GELCKIDKAYSGEIVILQNEFLKLNSV-LGDTKLLPQR----ERIENPLPLLQTTVEPSK 354 Query: 425 KADQEKMGLALGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKREFNVEANVG 484 +E + AL ++ DP R + D +++ I++ +G++ +++ ++ +++VE + Sbjct: 355 PQQREMLLDALLEISDSDPLLRYYVDSATHEIILSFLGKVQMEVTCALLQEKYHVEIEIK 414 Query: 485 KPQVAYRETIRQKVTDVEGKHAKQSGGRGQYGHVVIDMYPLEPGSNPKGYEFINDIKGGV 544 +P V Y E +K E + + + + + PL GS G ++ + + G Sbjct: 415 EPTVIYMERPLKK---AEYTIHIEVPPNPFWASIGLSVSPLPLGS---GMQYESSVSLGY 468 Query: 545 IPGEYIPAVDKGIQEQLKAGPLAGYPVVDMGIRLHFGSYHDVDSSELAFKLAASIAFKEG 604 + + AV +GI+ + G L G+ V D I +G Y+ S+ F++ A I ++ Sbjct: 469 LNQSFQNAVMEGIRYGCEQG-LYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQV 527 Query: 605 FKKAKPVLLEPIMKVEVETPEENTGDVIGDLSRRRGMLKGQESEVTGVKIHAEVPLSEMF 664 KKA LLEP + ++ P+E D + + + + V + E+P + Sbjct: 528 LKKAGTELLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQLKNNEVILSGEIPARCIQ 587 Query: 665 GYATQLRSLTKGRASYTMEFLKYDEAPSNVAQAVIEAR 702 Y + L T GR+ E Y + V + R Sbjct: 588 EYRSDLTFFTNGRSVCLTELKGYHVT---TGEPVCQPR 622
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 29.0 bits (65), Expect = 0.021 Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 1/62 (1%) Query: 160 ASSVEDLVTQTLEFTIEEVNADRNV-SNNAKNRQIVLNLYEKGIFDIKDAINQVADRLNI 218 A +V+D VTQ +E + ++ + S + + + L + D A QV ++L + Sbjct: 54 AQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQL 113 Query: 219 SK 220 + Sbjct: 114 AT 115
>INFPOTNTIATR#Macrophage infectivity potentiator signature. Length = 233 Score = 132 bits (334), Expect = 5e-40 Identities = 79/226 (34%), Positives = 124/226 (54%), Gaps = 9/226 (3%) Query: 28 AAKPATTADSKAAFKNDDQKSAYALGASLGRYMENSLKEQEKLGIKLDKDQLIAGVQDAF 87 A A A + D K +Y++GA LG K + GI ++ D L G+QD Sbjct: 14 AMSTAMAATDATSLTTDKDKLSYSIGADLG-------KNFKNQGIDINPDVLAKGMQDGM 66 Query: 88 A-DKSKLSDQEIEQTLQAFEARVKSSAQAKMEKDAADNEAKGKEYREKFAKEKGVKTSST 146 + + L++++++ L F+ + + A+ K A +N+AKG + + G+ + Sbjct: 67 SGAQLILTEEQMKDVLSKFQKDLMAKRSAEFNKKAEENKAKGDAFLSANKSKPGIVVLPS 126 Query: 147 GLVYQVVEAGKGEAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDGVIPGWTEGL 206 GL Y++++AG G P SDTV V Y GTLIDG FD++ G+P +F++ VIPGWTE L Sbjct: 127 GLQYKIIDAGTGAKPGKSDTVTVEYTGTLIDGTVFDSTEKAGKPATFQVSQVIPGWTEAL 186 Query: 207 KNIKKGGKIKLVIPPELAYGKAGVPG-IPPNSTLVFDVELLDVKPA 251 + + G ++ +P +LAYG V G I PN TL+F + L+ VK A Sbjct: 187 QLMPAGSTWEVFVPADLAYGPRSVGGPIGPNETLIFKIHLISVKKA 232
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 30.7 bits (69), Expect = 0.021 Identities = 13/69 (18%), Positives = 29/69 (42%), Gaps = 6/69 (8%) Query: 261 TAIDPFKGLLLG---LFFISVGMSLNLGVLYTHL-LWVVISVVVLVAVKILVLYLLARLY 316 A+ P L + L+FIS + L +++ + W +++ V+ ++ L Sbjct: 318 AAVAPHLDLTVDYGWLWFISQPLFKLLKWIHSFVGNWGFSIIIITFIVRGIMYPLTKA-- 375 Query: 317 GVRSSERMQ 325 S +M+ Sbjct: 376 QYTSMAKMR 384
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 31.9 bits (72), Expect = 0.001 Identities = 32/135 (23%), Positives = 51/135 (37%), Gaps = 16/135 (11%) Query: 11 YAHPESQDSVANRVLLKPATQLSNVTVHDLYAHYPDFFIDIPREQALLREHEVIVFQH-- 68 Y P + D N+V P + + +HD+ ++ D F L + + Sbjct: 9 YQMPTASDMPQNKVSWVPDPNRAVLLIHDMQNYFVDAFTAGASPVTELSANIRKLKNQCV 68 Query: 69 ----PLYTYSCPALLKEWLDRVLSRGFASGPGGNQLAGKYWRSVITTGEPESA------Y 118 P+ + P DR L F GPG N +G Y +IT PE + Sbjct: 69 QLGIPVVYTAQPGSQNP-DDRALLTDFW-GPGLN--SGPYEEKIITELAPEDDDLVLTKW 124 Query: 119 RYDALNRYPMSDVLR 133 RY A R + +++R Sbjct: 125 RYSAFKRTNLLEMMR 139
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 32.0 bits (72), Expect = 0.009 Identities = 13/125 (10%), Positives = 39/125 (31%), Gaps = 7/125 (5%) Query: 513 EDYQQWLSDVQKQENQADEAPKENANSAQARKDQKRREAELRAQTQPLRKEIARLEKEME 572 + + ++ + E A A + D ++ + +++ Sbjct: 127 KALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFST-------ADSAKIK 179 Query: 573 KLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQLEQMLL 632 L A+ A E + + E + TA + + ++ + ++ LE + Sbjct: 180 TLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMN 239 Query: 633 EGQSN 637 ++ Sbjct: 240 FSTAD 244 Score = 29.6 bits (66), Expect = 0.038 Identities = 16/115 (13%), Positives = 38/115 (33%) Query: 513 EDYQQWLSDVQKQENQADEAPKENANSAQARKDQKRREAELRAQTQPLRKEIARLEKEME 572 ++ N + + + + R+AEL + +++ Sbjct: 225 ARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIK 284 Query: 573 KLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQL 627 L A+ A E + D E Q A + + +++ ++ E + +EQ Sbjct: 285 TLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQN 339
>PF07299#Fibronectin-binding protein (FBP) Length = 219 Score = 31.8 bits (72), Expect = 0.002 Identities = 10/46 (21%), Positives = 21/46 (45%), Gaps = 2/46 (4%) Query: 71 PEANDFGLLEQTFIEYGQSGKGKSRKYLHTYDEAVPWNQVPGTFTP 116 P+ + + E ++ KG SRK++ ++ + + GTF Sbjct: 112 PDMEELDMKELSY--LSWIDKGSSRKFIIAKNDKNKFVGLQGTFQS 155
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 35.7 bits (82), Expect = 3e-05 Identities = 21/92 (22%), Positives = 32/92 (34%), Gaps = 16/92 (17%) Query: 55 VACIDGIVVGHLTIDVQQRPRRSHVADFGICVDSRWKNRGVASALMREMIE------MCD 108 + ++ +G + I + + D + D R K GV +AL+ + IE C Sbjct: 69 LYYLENNCIGRIKIR-SNWNGYALIEDIAVAKDYRKK--GVGTALLHKAIEWAKENHFCG 125 Query: 109 NWLRVDRIELTVFVDNAPAIKVYKKFGFEIEG 140 L I N A Y K F I Sbjct: 126 LMLETQDI-------NISACHFYAKHHFIIGA 150
>NAFLGMOTY#Sodium-type flagellar protein MotY precursor signature. Length = 293 Score = 32.0 bits (72), Expect = 0.005 Identities = 27/80 (33%), Positives = 36/80 (45%), Gaps = 13/80 (16%) Query: 272 RTPISGDYRGYQVYSMPPPSSGGIHIVQILNILENFDMQKYGF-GSADAMQIMAEAEKYA 330 R P+ G+ R + SMPPP G H +I N+ F Q G+ G A I++E EK Sbjct: 77 RRPM-GETRNVSLISMPPPWRPGEHADRITNL--KFFKQFDGYVGGQTAWGILSELEKGR 133 Query: 331 YADRSEYLGDPDFVKVPWQA 350 Y P F WQ+ Sbjct: 134 Y---------PTFSYQDWQS 144
>PF04619#Dr-family adhesin Length = 160 Score = 28.4 bits (63), Expect = 0.018 Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 4/60 (6%) Query: 29 VGAKYGHKMIEFDAKLSKDGEIFLLHDDNLERTSNGWGVAGELNWQD----LLRVDAGSW 84 +G ++ D + G+ FL+ D+N ++ W + D GSW Sbjct: 70 LGCDARQVALKADTDNFEQGKFFLISDNNRDKLYVNIRPTDNSAWTTDNGVFYKNDVGSW 129
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.9 bits (64), Expect = 0.041 Identities = 10/29 (34%), Positives = 16/29 (55%) Query: 33 IVMVGPSGCGKSTLLRMVAGLERVTTGDI 61 +V+ G G GKSTL+ + GL+ + Sbjct: 599 VVLEGTGGIGKSTLINTLVGLDFFSDTHF 627
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 51.1 bits (122), Expect = 2e-09 Identities = 42/171 (24%), Positives = 73/171 (42%), Gaps = 7/171 (4%) Query: 200 REREHGTVEHLLVMPITPFEIMMAKV-WSMGLVVLVVSGLSLVLMVKGVLGVPIEGSIPL 258 R T E +L + +I++ ++ W+ L +G+ +V G + L Sbjct: 93 RMEGQRTWEAMLYTQLRLGDIVLGEMAWAATKAALAGAGIGVVAAALGY----TQWLSLL 148 Query: 259 FMLGV-ALSLFATTSIGIFMGTIARSMPQLGLLVILVLLPLQMLSGGSTPRESMPQMVQD 317 + L V AL+ A S+G+ + +A S LV+ P+ LSG P + +P + Q Sbjct: 149 YALPVIALTGLAFASLGMVVTALAPSYDYFIFYQTLVITPILFLSGAVFPVDQLPIVFQT 208 Query: 318 IMLTMPTTHFVSLAQAILYRGAGFEIVWPQFLTLIAIGGAFF-TIALLRFR 367 +P +H + L + I+ ++ I I FF + ALLR R Sbjct: 209 AARFLPLSHSIDLIRPIMLGHPVVDVCQHVGALCIYIVIPFFLSTALLRRR 259
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.0 bits (67), Expect = 0.046 Identities = 9/26 (34%), Positives = 14/26 (53%) Query: 37 ARCMVGLIGPDGVGKSSLLSLISGAR 62 V L G G+GKS+L++ + G Sbjct: 595 FDYSVVLEGTGGIGKSTLINTLVGLD 620
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 83.3 bits (206), Expect = 8e-20 Identities = 71/408 (17%), Positives = 138/408 (33%), Gaps = 81/408 (19%) Query: 6 RHLAWWGVGALAVAAVVAWWLLRPAGVP-EGFAVSNGRIEATEVDIASKIAGRIDTILVK 64 R +A++ +G L +A +++ G +GR + I + I+VK Sbjct: 58 RLVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKE----IKPIENSIVKEIIVK 113 Query: 65 EGQFVREGEVLAKMDTRV----------------LQEQRLEAI----------------- 91 EG+ VR+G+VL K+ L++ R + + Sbjct: 114 EGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDE 173 Query: 92 -------------------AQIKEAQSAVAAAQALLEQRQSETRAAQSLVNQRQAELDSV 132 Q Q+ + L+++++E + +N+ + Sbjct: 174 PYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVE 233 Query: 133 AKRHTRSRSLARRGAISAQQLDDDRAAAESARAALESAKAQVSASKAAIEAARTNIIQ-- 190 R SL + AI+ + + A L K+Q+ ++ I +A+ Sbjct: 234 KSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVT 293 Query: 191 -----------AQTRVEAAQATERRIAADID--DSELKAPRDGRV-QYRVAEPGEVLAAG 236 QT T + S ++AP +V Q +V G V+ Sbjct: 294 QLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTA 353 Query: 237 GRVLNMVDLSDVY-MTFFLPTEQAGTLKLGGEARLILDAAPDLRIPATISFVASVAQFTP 295 ++ +V D +T + + G + +G A + ++A P R V V Sbjct: 354 ETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYG---YLVGKVKNINL 410 Query: 296 KTVETSDERLKLMFRVKARIPPELLQQHLEYV--KTGLPGVAWVRVNE 341 +E D+RL L+F V I L + + +G+ A ++ Sbjct: 411 DAIE--DQRLGLVFNVIISIEENCLSTGNKNIPLSSGMAVTAEIKTGM 456
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 29.0 bits (65), Expect = 0.032 Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 18/98 (18%) Query: 226 ENLLFTHRGLSGPAVLQISSYWQPGEFVSINLLPDVDLETFL--NEQRNAHPNQSLKNTL 283 E + RG GP +L + ++ + + + L T + N Q A N LK L Sbjct: 63 EAITLRERGWKGP-ILMLEGFFHAQD---LEIYDQHRLTTCVHSNWQLKALQNARLKAPL 118 Query: 284 AVHL------------PKRLVERLQQLGQIPDVSLKQL 309 ++L P R++ QQL + +V L Sbjct: 119 DIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTL 156
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 37.8 bits (88), Expect = 1e-04 Identities = 30/105 (28%), Positives = 43/105 (40%), Gaps = 17/105 (16%) Query: 22 AVSRGDAVADYIIDNVSILDLINGGEISGPIVIKGRYIAGVG-AEYAD---------APA 71 V+R D +I N ILD + G + I +K IA +G A D P Sbjct: 60 QVTREGGAVDTVITNALILD--HWGIVKADIGLKDGRIAAIGKAGNPDMQPGVTIIVGPG 117 Query: 72 LQRIDARGATAVPGFIDAHLHIESSMMTPVTFETATLPRGLTTVI 116 + I G G +D+H+H + P E A L GLT ++ Sbjct: 118 TEVIAGEGKIVTAGGMDSHIH----FICPQQIEEA-LMSGLTCML 157
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 34.9 bits (80), Expect = 7e-04 Identities = 61/372 (16%), Positives = 133/372 (35%), Gaps = 32/372 (8%) Query: 49 FNIAQNDMISTYGLSMTQLGMIGLGFSITYGVGKTLVSYYADGKNTKQFLPFMLILSAIC 108 N++ D+ + + + F +T+ +G + +D K+ L F +I++ C Sbjct: 33 LNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIIN--C 90 Query: 109 MLGFSASMGSGSVSLFLMIAFYALSGFFQSTGGSCSYSTI----TKWTPRRKRGTFLGFW 164 +G SL +M + F Q G + + + ++ P+ RG G Sbjct: 91 FGSVIGFVGHSFFSLLIM------ARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLI 144 Query: 165 NISHNLGGA-----GAAGVALFGANYLFDGHVIGMFIFPSIIALIVGFIGLRYGSDSPES 219 +G G +YL +I + P ++ L+ + ++ D Sbjct: 145 GSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKEVRIKGHFDIKGI 204 Query: 220 YGLGKAEELFGEEISEEDKETESTDMTKWQIFVEYVLK--NKVIWLLCFANI-FLYVVRI 276 + F + + + IFV+++ K + + NI F+ V Sbjct: 205 ILMSVGIVFFMLFTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVDPGLGKNIPFMIGVLC 264 Query: 277 GIDQWSTVYAFQELKLSKAVAIQGFTLFEAG------ALVGTLLWGWLSDLANGRRG--L 328 G + TV F + + + E G + +++G++ + RRG Sbjct: 265 GGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIGGILVDRRGPLY 324 Query: 329 VACIALALIIA---TLGVYQHASNQYIYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIG 385 V I + + T ++ ++ + +F LG L F ++ + + ++A G Sbjct: 325 VLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFTKTVISTIVSSSLKQQEA-G 383 Query: 386 AADGIKGTFAYL 397 A + ++L Sbjct: 384 AGMSLLNFTSFL 395
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 39.9 bits (93), Expect = 2e-05 Identities = 65/408 (15%), Positives = 137/408 (33%), Gaps = 60/408 (14%) Query: 29 RHILLTIWLGYALFY--FTRKSFNSAVPEILANGVLSRSDIGLLATLFYITYGVSKFVSG 86 RH + IWL F+ N ++P+I + + + T F +T+ + V G Sbjct: 11 RHNQILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYG 70 Query: 87 IVSDRSNARYFMGIGLIATGIINILFGFSTSLWAFAVLWVLNAFFQGWGS---PVCARLL 143 +SD+ + + G+I +++ S F L ++ F QG G+ P ++ Sbjct: 71 KLSDQLGIKRLLLFGIIINCFGSVIGFVGHS---FFSLLIMARFIQGAGAAAFPALVMVV 127 Query: 144 TAWY-SRTERGGWWALWNTAHNVGGALIPIVMAASALHYGWRAGMMIAGCMAIVVGIFLC 202 A Y + RG + L + +G + P + A + W ++ M ++ + Sbjct: 128 VARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHW--SYLLLIPMITIITVPF- 184 Query: 203 WRLRDRPQALGLPAVGEWRHDALEIAQQQEGAGLTRKEILTKYVLLNPYIWLLSFCYVLV 262 + L +I G L I+ + Y VL Sbjct: 185 --------LMKLLKKEVRIKGHFDIK----GIILMSVGIVFFMLFTTSYSISFLIVSVLS 232 Query: 263 YVV-----RAAINDWGNLYMSETLGVDLVTANTAVTMFELGGFI-----------GALVA 306 +++ R + + + + + + + + + GF+ A Sbjct: 233 FLIFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTA 292 Query: 307 GWGSDKLFNGNRGPMNLIFAAGILL-SVGSLWLMPFASYVMQATCFFTIGFFVFGPQMLI 365 GS +F G + + GIL+ G L+++ + + F T F + + Sbjct: 293 EIGSVIIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFL-SVSFLTASFLLETTSWFM 351 Query: 366 ---------GMAAAECS---------HKEAAGAATGFVGLFAYLGASL 395 G++ + ++ AGA + ++L Sbjct: 352 TIIIVFVLGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGT 399
>PF06580#Sensor histidine kinase Length = 349 Score = 39.5 bits (92), Expect = 2e-05 Identities = 28/142 (19%), Positives = 57/142 (40%), Gaps = 11/142 (7%) Query: 365 LRPRQLDDLTLEQAIRSLMREMELEGRGIVSHLEWRIDESALSENQRVTLFRVCQEGLNN 424 LR ++L + + ++L L++ + + +V + Q + N Sbjct: 208 LRYSNARQVSLADELTVVDSYLQLASIQFEDRLQFENQINPAIMDVQVPPM-LVQTLVEN 266 Query: 425 IVKHA-----DASAVTLQGWQHDERLMLVIEDDGSGLPPDSGQ-HGFGLTGMRERVTALG 478 +KH + L+G + + + L +E+ GS ++ + G GL +RER+ L Sbjct: 267 GIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKESTGTGLQNVRERLQMLY 326 Query: 479 G---TLTISCLHG-TRVSVSLP 496 G + +S G V +P Sbjct: 327 GTEAQIKLSEKQGKVNAMVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 61.4 bits (149), Expect = 2e-13 Identities = 29/174 (16%), Positives = 59/174 (33%), Gaps = 20/174 (11%) Query: 2 ITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDIS 61 T+ + DD +R+ Q L V + + + + D+ MPD + Sbjct: 4 ATILVADDDAAIRTVLNQALSRA-GYDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 62 GLELLSQLPK---GMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATG 118 +LL ++ K + +++S ++ +A GA +L K ELI + Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR---- 117 Query: 119 GCYLTPDIAIKLASGRQDPLTKRERQVAEKLAQG---MAVKEIAAELGLSPKTV 169 A+ R L + + + + + A L + T+ Sbjct: 118 --------ALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTL 163
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 120 bits (302), Expect = 2e-39 Identities = 50/89 (56%), Positives = 66/89 (74%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61 NK LI +AE EL+K + AA+++ +A++ L +G+ VQL+GFG F+V RA R GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGR 62 Query: 62 NPQTGKEIKIAAANVPAFVSGKALKDAVK 90 NPQTG+EIKI A+ VPAF +GKALKDAVK Sbjct: 63 NPQTGEEIKIKASKVPAFKAGKALKDAVK 91
>PF06580#Sensor histidine kinase Length = 349 Score = 34.1 bits (78), Expect = 0.001 Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 16/83 (19%) Query: 369 GVISVTASESGAGVKISVTDSGKGIAADQLEAIFTPYFTTKAEGTGLGLAVVHNIVEQHG 428 G I + ++ V + V ++G + E TG GL V ++ Sbjct: 279 GKILLKGTKDNGTVTLEVENTGSLALKNT------------KESTGTGLQNVRERLQMLY 326 Query: 429 G---TIQVASQEGKGATFTLWLP 448 G I+++ ++GK + +P Sbjct: 327 GTEAQIKLSEKQGKV-NAMVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 527 bits (1358), Expect = 0.0 Identities = 184/468 (39%), Positives = 253/468 (54%), Gaps = 35/468 (7%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 ILV DDD + T+L L GY+V + ++ + DLV+ DV M + + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 L IK P +PVL+M+A ++ TA++A + GA DYL KP D L + +ALA Sbjct: 66 LPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKRR 125 Query: 128 DAETPAVSASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSA 187 ++ S +VG+S AMQ + +A + ++ T++I G+SGTGKELVARA+H Sbjct: 126 PSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHDYGK 185 Query: 188 RSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISP 247 R P V +N AA+ L+ESELFGHEKGAFTGA R GRF +A+GGTLFLDEIGD+ Sbjct: 186 RRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDMPM 245 Query: 248 MMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAI 307 Q RLLR +Q+ E VG I DVR++AAT++DL +N G FR+DLYYRLNVV + Sbjct: 246 DAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLNVVPL 305 Query: 308 EVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVER 367 +P LR R EDIP L HF+Q+ + VK F +A++L+ + WPGN+RELEN V R Sbjct: 306 RLPPLRDRAEDIPDLVRHFVQQAEKEGLD-VKRFDQEALELMKAHPWPGNVRELENLVRR 364 Query: 368 AVVLLTGEYISERELPLAIASTPIPLVQSQDIQP-------------------------- 401 L + I+ + + S + Sbjct: 365 LTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFGDALP 424 Query: 402 --------LVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 L E+E +ILAAL T GN+ +AA LG+ R TL K+ Sbjct: 425 PSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRE 472
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 31.3 bits (71), Expect = 7e-04 Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 9/62 (14%) Query: 37 IANFFVAEKVLQDLVLQLHPRSTWHSFLPAKRMDIVVSALEMNEGGLSQVEERILHEVVA 96 IA+FFV EK+LQ + Q+H S P+ R+ + V G +QVE R + E Sbjct: 81 IADFFVTEKMLQHFIKQVHSNSF---MRPSPRVLVCVPV------GATQVERRAIRESAQ 131 Query: 97 GA 98 GA Sbjct: 132 GA 133
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 33.4 bits (76), Expect = 1e-04 Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 5/54 (9%) Query: 78 IDPDVRGCGVGRMLVKHALSMAPE-----LTTTVNEQNEQAVGFYKKVGFKVTG 126 + D R GVG L+ A+ A E L + N A FY K F + Sbjct: 97 VAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFIIGA 150
>BINARYTOXINB#Binary toxin B family signature. Length = 764 Score = 32.3 bits (73), Expect = 0.004 Identities = 14/58 (24%), Positives = 23/58 (39%) Query: 289 ETSTPDLELARRFAQAIHAKYPGKLLAYNCSPSFNWQKNLDDKTIASFQQQLSDMGYK 346 ET+ PD+ L A P L Y + N D +T + + QL+++ Sbjct: 544 ETTKPDMTLKEALKIAFGFNEPNGNLQYQGKDITEFDFNFDQQTSQNIKNQLAELNAT 601
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 32.2 bits (73), Expect = 0.017 Identities = 19/87 (21%), Positives = 37/87 (42%), Gaps = 17/87 (19%) Query: 343 SGLEPLNIGEDSLFVNVGERTN---VTGSA----KFKRLIKEEKYSEALDVARQQVENGA 395 +P+ + ++ + +TN VT + +R+I + LD+ R QV A Sbjct: 298 QAAKPVAALDKNIIIKAHGQTNALIVTAAPDVMNDLERVIAQ------LDIRRPQVLVEA 351 Query: 396 QIIDINMDEGMLDAEAAMVRFLNLIAG 422 I ++ D L+ +++ N AG Sbjct: 352 IIAEVQ-DADGLNLG---IQWANKNAG 374
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 29.2 bits (65), Expect = 0.014 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 4/45 (8%) Query: 145 PLLVSHGIALGCLVSTILGLPAWAERRLRLRNCSISRVDYQESLW 189 P +V GIA G V T+ GL W ++ N D + +W Sbjct: 42 PAIVG-GIATGAAVGTVSGLLGWGLKQAEEAN---KTPDKPDKVW 82
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 87.2 bits (216), Expect = 5e-22 Identities = 32/124 (25%), Positives = 58/124 (46%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARQQVPDVMILDVGLPDI 60 M T+ + +D+ I L L + G+ V + + D+++ DV +PD Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 + F+L ++ P LPVL ++A++ + + E GA DY+ KPF E+ + L Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 121 RVKK 124 K+ Sbjct: 121 EPKR 124
>PF06580#Sensor histidine kinase Length = 349 Score = 32.9 bits (75), Expect = 0.003 Identities = 41/182 (22%), Positives = 69/182 (37%), Gaps = 40/182 (21%) Query: 312 LRQARLENRQEVVLTAVDVAALFR---RVSEARTVQLAE-----------------KKIT 351 +R LE+ + ++ L R R S AR V LA+ ++ Sbjct: 182 IRALILEDPTKAREMLTSLSELMRYSLRYSNARQVSLADELTVVDSYLQLASIQFEDRLQ 241 Query: 352 LHV-TPTEVNVAAEPALLEQAL-GNLLDNAIDFTPESGCITLSAEVEQEHVTLKVLDTGS 409 + P +L Q L N + + I P+ G I L + VTL+V +TGS Sbjct: 242 FENQINPAIMDVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGS 301 Query: 410 GIPDYALSRIFERFYSLPRANGQKSSGLGLAFVSE-VARLFNGEVTLR-NVQEGGVLASL 467 N ++S+G GL V E + L+ E ++ + ++G V A + Sbjct: 302 LALK----------------NTKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMV 345 Query: 468 RL 469 + Sbjct: 346 LI 347
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 81.8 bits (202), Expect = 4e-20 Identities = 30/122 (24%), Positives = 60/122 (49%), Gaps = 1/122 (0%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M IL+ +D+ R L GYDV ++ A + + ++ D +LV+ D+ +P + Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 61 NGLLLARELRE-QANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 N L +++ + ++ ++ ++ ++ + I E GA DY+ KPF+ EL L+ Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 120 RT 121 Sbjct: 121 EP 122