>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 37.0 bits (86), Expect = 1e-06 Identities = 17/74 (22%), Positives = 30/74 (40%) Query: 17 QGIDITMLNLGKIHDAWIKRIKGDLKRIGKVRLHRLGTLSTAVSRKKQCRNPQNGKIMTV 76 + ++T + DA + L + KV+L G ++ RNPQ G+ + + Sbjct: 13 EATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGRNPQTGEEIKI 72 Query: 77 PEKIRVRFKASQNL 90 FKA + L Sbjct: 73 KASKVPAFKAGKAL 86
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 31.0 bits (70), Expect = 0.003 Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 1/43 (2%) Query: 80 MQCDIINELETLKERFEDQKFDVILSDM-APESCGIKSLDHIR 121 I + TL D++++D+ P+ L I+ Sbjct: 28 YDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDLLPRIK 70
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 90.0 bits (223), Expect = 3e-24 Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 15/118 (12%) Query: 43 RVFFDYDKSNIIEAGADALLDIIEVLQNN--PDMKVTAIGHTDNRGSYEYNIALGERRAN 100 V F+++K+ + G AL + L N D V +G+TD GS YN L ERRA Sbjct: 220 DVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQ 279 Query: 101 AAKKFMVS--CAPHLEGRIKTVSRGEAEPLVYVQDNSKNSKYEKQH-----AKNRRVE 151 + +++S +I GE+ P V N+ ++ ++ A +RRVE Sbjct: 280 SVVDYLISKGIPA---DKISARGMGESNP---VTGNTCDNVKQRAALIDCLAPDRRVE 331
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 449 bits (1156), Expect = e-161 Identities = 189/345 (54%), Positives = 256/345 (74%), Gaps = 5/345 (1%) Query: 17 FKGLFASDIAIDLGTANTVVYQKNQGIVIDEPSVVARIKEKGSYVPY--AFGKKAKMMLG 74 F+G+F++D++IDLGTANT++Y K QGIV++EPSVVA +++ A G AK MLG Sbjct: 5 FRGMFSNDLSIDLGTANTLIYVKGQGIVLNEPSVVAIRQDRAGSPKSVAAVGHDAKQMLG 64 Query: 75 KTPGEIEAIRPLKDGVIADFRSAEEMLKYFIRSANTKLTVN-KPDIIICVPSGSTPVERR 133 +TPG I AIRP+KDGVIADF E+ML++FI+ ++ + P +++CVP G+T VERR Sbjct: 65 RTPGNIAAIRPMKDGVIADFFVTEKMLQHFIKQVHSNSFMRPSPRVLVCVPVGATQVERR 124 Query: 134 AIQDTAESAGANEVFLIEEPMAAAIGAGLPVTEPEGSMVVDIGGGTTEVAIISLGGIVYS 193 AI+++A+ AGA EVFLIEEPMAAAIGAGLPV+E GSMVVDIGGGTTEVA+ISL G+VYS Sbjct: 125 AIRESAQGAGAREVFLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNGVVYS 184 Query: 194 RSARVGGDIMDEAIKSYIRENHKLLIGETTAEKIKKSVGSASLPSENNKEGMMVKGRDLV 253 S R+GGD DEAI +Y+R N+ LIGE TAE+IK +GSA P + +E + V+GR+L Sbjct: 185 SSVRIGGDRFDEAIINYVRRNYGSLIGEATAERIKHEIGSA-YPGDEVRE-IEVRGRNLA 242 Query: 254 SGMPKEVLLSEYQVAESLTESVHQIISAIRTALESTPPELSSDIVDKGIVLSGGGGLLRN 313 G+P+ L+ ++ E+L E + I+SA+ ALE PPEL+SDI ++G+VL+GGG LLRN Sbjct: 243 EGVPRGFTLNSNEILEALQEPLTGIVSAVMVALEQCPPELASDISERGMVLTGGGALLRN 302 Query: 314 LGKVISQITKLPVRVADDPLCCVALGSGKVLENMDYFSHVLFKQD 358 L +++ + T +PV VA+DPL CVA G GK LE +D LF ++ Sbjct: 303 LDRLLMEETGIPVVVAEDPLTCVARGGGKALEMIDMHGGDLFSEE 347
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 35.2 bits (81), Expect = 5e-04 Identities = 28/140 (20%), Positives = 57/140 (40%), Gaps = 24/140 (17%) Query: 66 IFGYIGDKYGRRKVLLASVILASISSTAIAVIPSAKKIGIFSPILLLVCRIIQGMATGGE 125 + G + D++GRR VLL S+ A++ +A P +L + RI+ G+ TG Sbjct: 62 VLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLW--------VLYIGRIVAGI-TGAT 112 Query: 126 TSINSAFLIEHSSDK---KNLGFLGSMKAFSGALGSITCFVMIAVCKKLTGENYEIWGWK 182 ++ A++ + + ++ GF+ + F G + +M Sbjct: 113 GAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGF------------SPH 160 Query: 183 LLFYFCSVMGIIGFLTRYII 202 F+ + + + FLT + Sbjct: 161 APFFAAAALNGLNFLTGCFL 180
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 58.1 bits (140), Expect = 4e-12 Identities = 64/272 (23%), Positives = 103/272 (37%), Gaps = 37/272 (13%) Query: 1 MTTTLLKNKKGLITGITNKRSIAYGIAKTLLEHGAEL-AITYQNETVKERLLPIATELNV 59 M ++ K ITG + I +A+TL GA + A+ Y E +++ + + E Sbjct: 1 MNAKGIEGKIAFITG--AAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARH 58 Query: 60 ELVLSCDVANEGTIDDVFGVIEKKWSTLDFLVHA---IAFSDKSELSNRYVNTSLSNFLN 116 DV + ID++ IE++ +D LV+ + LS+ + S +N Sbjct: 59 AEAFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFS--VN 116 Query: 117 AMHISCYSFTALAQRAEKMMPN-VGSLLTLSYYGAEKVIPNYNVMGLCKAALEASVKYLA 175 + + F A ++ MM GS++T+ A + KAA K L Sbjct: 117 STGV----FNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLG 172 Query: 176 CDLGPQNIRVNAISAGPIRTLASSGISDFCFISKWNRNNS----------------PLRR 219 +L NIR N +S G T + W N PL++ Sbjct: 173 LELAEYNIRCNIVSPGSTETDMQWSL--------WADENGAEQVIKGSLETFKTGIPLKK 224 Query: 220 NTTIEDIGKAALYLLSDLSSGTTGEILHVDSG 251 DI A L+L+S + T L VD G Sbjct: 225 LAKPSDIADAVLFLVSGQAGHITMHNLCVDGG 256
>MALTOSEBP#Maltose binding protein signature. Length = 396 Score = 29.7 bits (66), Expect = 0.025 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 2/56 (3%) Query: 102 EPHKLLEGILFAGKAINASAAYIYIRGEFYNEYLVLKKALEEAYKEGLIGENACKS 157 +P K G+L AG INA++ + EF YL+ + LE K+ +G A KS Sbjct: 279 QPSKPFVGVLSAG--INAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKS 332
>LCRVANTIGEN#Low calcium response V antigen signature. Length = 326 Score = 27.7 bits (61), Expect = 0.030 Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 13/100 (13%) Query: 9 VFERFSQSNPTPKVELN---YTNHFTL---------LTAIILSARTADRSVNKVTEELFS 56 + F +S+P + EL HF+L L I+ S + +K+ EEL Sbjct: 100 RVKEFLESSPNTQWELRAFMAVMHFSLTADRIDDDILKVIVDSMNHHGDARSKLREELAE 159 Query: 57 IADSPEKILNLGQSELKKHISSIGLYNSKAKNIIKLSKIL 96 + + KI ++ Q+E+ KH+SS G N K+I + K L Sbjct: 160 LT-AELKIYSVIQAEINKHLSSSGTINIHDKSINLMDKNL 198
>PF07675#Cleaved Adhesin Length = 1358 Score = 29.3 bits (65), Expect = 0.046 Identities = 12/34 (35%), Positives = 20/34 (58%) Query: 233 VVDIGMARVATEPGNFDVIVTGNLYGDILSDIMA 266 V + M + TE GN+DV++T + Y ++ I A Sbjct: 294 VATVNMTKQITENGNYDVVITRSNYLPVIKQIQA 327
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 53.3 bits (128), Expect = 5e-10 Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 2/122 (1%) Query: 10 ANILVIDEDIFQTEQIYNVLKQRFRLIKILNDPTEALKVSIKDNYDLIISDMQFSRTNGL 69 A ILV D+D + L + ++I ++ + + DL+++D+ N Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 70 RLCSEFRSKVETRYTPILILSEDHDKSNLVKALDVGANDYLTVPLDESELIARINLQVKH 129 L + P+L++S + +KA + GA DYL P D +ELI I + Sbjct: 64 DLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 130 KR 131 + Sbjct: 122 PK 123
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 65.2 bits (159), Expect = 1e-15 Identities = 31/133 (23%), Positives = 58/133 (43%), Gaps = 3/133 (2%) Query: 3 AKILVVDDILSNVQLLEARLKAEYYAVIVAHDGKEAIDLVAKQQPDIILLNTMMPKINGF 62 A ILV DD + +L L Y V + + +A D+++ + +MP N F Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 63 EVCKNLKSNLLITHIPIITVTALHNTHDRVKGTNTGADNFLTKPIDEIALSARI-KSLTH 121 ++ +K +P++ ++A + +K + GA ++L KP D L I ++L Sbjct: 64 DLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 122 LKIIIDELRLRER 134 K +L + Sbjct: 122 PKRRPSKLEDDSQ 134
>TATBPROTEIN#Bacterial sec-independent translocation TatB protein signature. Length = 171 Score = 45.8 bits (108), Expect = 2e-09 Identities = 17/73 (23%), Positives = 38/73 (52%), Gaps = 7/73 (9%) Query: 1 MFSIGLPEILVVALVGIIVLDKSKVPVFI----SFIRSIYRYFIIIKSRTRNLLKNTGIE 56 MF IG E+L+V ++G++VL ++PV + +IR++ +++ L + ++ Sbjct: 1 MFDIGFSELLLVFIIGLVVLGPQRLPVAVKTVAGWIRALRSLATTVQNE---LTQELKLQ 57 Query: 57 DLYYKKHDIEKVN 69 + +EK + Sbjct: 58 EFQDSLKKVEKAS 70
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 32.9 bits (75), Expect = 0.006 Identities = 34/154 (22%), Positives = 61/154 (39%), Gaps = 22/154 (14%) Query: 553 SEKEKLLSMENEIGKRVVGQKDAIEAISNAVRRSRSGVQDTNRPFGSFLFLGPTGVGKTE 612 + L +++ G +VG+ A++ I + R + T+ + G +G GK Sbjct: 123 KRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLAR----LMQTDLTL---MITGESGTGKEL 175 Query: 613 LAKVLAEFLFDNQGTPLRFDMSEYMEKHSISKLIGAPPGYVGYEQGGRLTEAVRRRPYQV 672 +A+ L ++ G + +M+ S+L G+E+G T A R + Sbjct: 176 VARALHDYGKRRNGPFVAINMAAIPRDLIESEL-------FGHEKGA-FTGAQTRSTGRF 227 Query: 673 -------ILFDEIEKANPDIFNLLLQVLDEGRLT 699 + DEI D LL+VL +G T Sbjct: 228 EQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYT 261