>PF08280#M protein trans-acting positive regulator Length = 530 Score = 22.5 bits (48), Expect = 0.029 Identities = 11/21 (52%), Positives = 13/21 (61%) Query: 1 MFFSVIFLFGLNYLICNSPLF 21 MFFS FLF L + I + LF Sbjct: 351 MFFSKSFLFNLQHFIPETNLF 371
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 29.4 bits (66), Expect = 0.022 Identities = 13/32 (40%), Positives = 18/32 (56%) Query: 208 YVDDLREGKTIDYYNDGKVFRLKNYKDNIGNG 239 + + EGK+ID YN GK+ R Y D+I Sbjct: 195 FTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEA 226
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 31.3 bits (70), Expect = 0.014 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 9/80 (11%) Query: 24 KNETELQKFRNKVDKVIKEELKNDYKKEYLKRKDNLKKIENN---------GEIGFEDED 74 KN+TE +KF++ ++ ++K E N+ + + +D LKKI + GEI F D D Sbjct: 51 KNKTEKEKFKDSINNLVKTEFTNETLDKIQQTQDLLKKIPKDVLEIYSELGGEIYFTDID 110 Query: 75 FIFQFEDNALTLASKKLKSI 94 + E L+ K + Sbjct: 111 LVEHKELQDLSEEEKNSMNS 130
>PF07675#Cleaved Adhesin Length = 1358 Score = 31.6 bits (71), Expect = 0.007 Identities = 27/86 (31%), Positives = 33/86 (38%), Gaps = 17/86 (19%) Query: 360 NQIAPYLHYVNEVGKKYDFTVKSFGHAGDGNLHIYACSNDMEI-----GEFKRQVEEFLT 414 NQ A Y + E GKKY FT++ G GDG DME+ + V T Sbjct: 493 NQPARYDDFAFEAGKKYTFTMRRAG-MGDG--------TDMEVEDDSPASYTYTVYRDGT 543 Query: 415 DIYSKASELGGLISGEHGIGYGKMEY 440 I L E G+ G EY Sbjct: 544 KI---KEGLTATTFEEDGVAAGNHEY 566
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 402 bits (1034), Expect = e-134 Identities = 153/669 (22%), Positives = 276/669 (41%), Gaps = 63/669 (9%) Query: 10 NIRNISLLGHRGSGKTTLVESILYVKDYIKRKGDVENGTTVSDFDKEEIRRIFSINTSLI 69 I NI +L H +GKTTL ES+LY I G V+ GTT +D E +R +I T + Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 70 PVEHNDVKLNFLDTPGYFDFVGEVVSALRVSASAVLVLDATAGVEVGTEKAWKLLEERKL 129 + + K+N +DTPG+ DF+ EV +L V A+L++ A GV+ T + L + + Sbjct: 62 SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGI 121 Query: 130 PRIIFVNKMDKGYVNYPKLLTELKEKFGKKIAPFCIPIGEKDEFKGFVNVVDMVGRVFDG 189 P I F+NK+D+ ++ + ++KEK +I Sbjct: 122 PTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIK-------------------------- 155 Query: 190 KECVDTPIPADIDVSEVRNLLFEAIAETDEVLMDKYFAGEEFTKEEIVKGLHKGVVNGDI 249 ++ P + +E + + E ++ L++KY +G+ E+ + N + Sbjct: 156 QKVELYPNMCVTNFTESEQW--DTVIEGNDDLLEKYMSGKSLEALELEQEESIRFHNCSL 213 Query: 250 VPVMVGSAQQNIGIHTLLNYLELYMPCPTELFSGQRIGEDPTTQQEKVVKISSENPFSAI 309 PV GSA+ NIGI L+ + T ++ Sbjct: 214 FPVYHGSAKNNIGIDNLIEVITNKFYSSTH---------------------RGQSELCGK 252 Query: 310 VFKTLVDPFIGKISFFKVNSGTIKKETEVFNPKKNKKERIAQILTMQGNKQIELDELRAG 369 VFK ++++ ++ SG + V +K K +I ++ T + ++D+ +G Sbjct: 253 VFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKI-KITEMYTSINGELCKIDKAYSG 311 Query: 370 DIGAT--TKLQFTQT-GDTLCDKNFPVVFNKIRFPKPNIYSGVLPADKNDDEKLSTAIQR 426 +I L+ GDT +I P P + + V P+ E L A+ Sbjct: 312 EIVILQNEFLKLNSVLGDTKLLPQ----RERIENPLPLLQTTVEPSKPQQREMLLDALLE 367 Query: 427 VMEEDPTFVMSRNYETKQLLIGGQGEKHLYIILCKIKNKFGVHAELENVIVSYRETILGK 486 + + DP + T ++++ G+ + + ++ K+ V E++ V Y E L K Sbjct: 368 ISDSDPLLRYYVDSATHEIILSFLGKVQMEVTCALLQEKYHVEIEIKEPTVIYMERPLKK 427 Query: 487 AEVQGKHKKQSGGAGQFGDVFIRFE--HSDKDFEFIDEIKGGVVPRNYIPAVEKGLIEAK 544 AE + + + + ++ + G + +++ AV +G+ Sbjct: 428 AE--YTIHIEVPPNPFWASIGLSVSPLPLGSGMQYESSVSLGYLNQSFQNAVMEGIRYGC 485 Query: 545 EKGVLAGYPVINFKATLYDGSYHPVDSNDLSFKLAAILAFKAGMEKAKPVLLEPFVRMEI 604 E+G L G+ V + K G Y+ S F++ A + + ++KA LLEP++ +I Sbjct: 486 EQG-LYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQVLKKAGTELLEPYLSFKI 544 Query: 605 RIPEEYMGDVMGDLNKRRGRVLGMDHTETGEQLLLAEVPEAEILKYSIDLRALTQGRGEF 664 P+EY+ D K ++ + E +L E+P I +Y DL T GR Sbjct: 545 YAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCIQEYRSDLTFFTNGRSVC 603 Query: 665 EYEFVRYEE 673 E Y Sbjct: 604 LTELKGYHV 612
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 84.5 bits (209), Expect = 8e-20 Identities = 53/155 (34%), Positives = 81/155 (52%), Gaps = 17/155 (10%) Query: 13 VNIGTIGHVDHGKTTTT-------AAISKVLS-DKGWASKVDFDQIDAAPEEKERGITIN 64 +NIG + HVD GKTT T AI+++ S DKG + E++RGITI Sbjct: 4 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLL------ERQRGITIQ 57 Query: 65 TAHIEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLSR 124 T ++ E +D PGH D++ + + +DGAIL++SA DG QTR R Sbjct: 58 TGITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALR 117 Query: 125 QVGVPYIVVYLNKSDMVEDEELLELVEMEVRELLT 159 ++G+P I ++NK D + L V +++E L+ Sbjct: 118 KMGIPTI-FFINKIDQNGID--LSTVYQDIKEKLS 149
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 168 bits (428), Expect = 3e-51 Identities = 92/399 (23%), Positives = 156/399 (39%), Gaps = 91/399 (22%) Query: 1 MKTYLITGAAGFIGANFLKYILKKHKDIKVIVVDSLT--YAGNLGTIK-EELKDSRVKFE 57 MK YL+TGAAGFIG + K +L+ V+ +D+L Y +L + E L +F Sbjct: 1 MK-YLVTGAAGFIGFHVSKRLLEAGHQ--VVGIDNLNDYYDVSLKQARLELLAQPGFQFH 57 Query: 58 KVDIRDRKEIERVFSENKVDYVVNFAAESHVDRSIENPQIFLETNILGTQNLLDNAKKAW 117 K+D+ DR+ + +F+ + V V S+ENP + ++N+ G N+L+ + Sbjct: 58 KIDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHN- 116 Query: 118 TVSKDENGYPIYREDIKYLQV-STDEVYGSLSKDYDEPIELVIDDEDVKKVIKNRKNLKT 176 I++L S+ VYG K P Sbjct: 117 --------------KIQHLLYASSSSVYGLNRKM---P---------------------- 137 Query: 177 YGNNFFTEESPVD-PRSPYSASKTGADHIVIAYGETYKLPINITRCSNNYGPYHFPEKLI 235 F+ + VD P S Y+A+K + + Y Y LP R YGP+ P+ + Sbjct: 138 -----FSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFFTVYGPWGRPDMAL 192 Query: 236 PLMIKNILEGKKLPVYGKGDNIRDWLYVKDHCKGIDLVL------------------REA 277 K +LEGK + VY G RD+ Y+ D + I + Sbjct: 193 FKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPHADTQWTVETGTPAASI 252 Query: 278 KSGEIYNIGGFNEEKNINIVKLVIDVLKEEITNNDEYKKVLKTDISNINYDLITYVQDRL 337 +YNIG + + ++ ++ + D L E N + + Sbjct: 253 APYRVYNIGNSSPVELMDYIQALEDALGIEAKKN--------------------MLPLQP 292 Query: 338 GHDMRYAINPSRIAKDLGWYPETDFETGIRKTVKWYLEN 376 G + + + + + +G+ PET + G++ V WY + Sbjct: 293 GDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDF 331
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 67.5 bits (165), Expect = 5e-15 Identities = 56/285 (19%), Positives = 109/285 (38%), Gaps = 50/285 (17%) Query: 3 KVLILGSCGMLGSVLCEYLLQNNYQVIGIDKIN------LEN------KFEKYKLYNIDL 50 K L+ G+ G +G + + LL+ +QV+GID +N L+ ++ + IDL Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 51 LDFFKVEEVIFQEKPNIIINAAAIVNLNLCEENYELAELLHVDLNEQ-FLNL---SKKIS 106 D + ++ + + + + EN + D N FLN+ + Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLEN----PHAYADSNLTGFLNILEGCRHNK 117 Query: 107 FK-FIYISTDSVF-DGTKSNYIEEDLA-IPLNNYAKTKFLGEEEVKKMEDYIVIRT---- 159 + +Y S+ SV+ K + +D P++ YA TK E + Sbjct: 118 IQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLR 177 Query: 160 --NIYGYSDRQN-SLLKWAYDELN-KNKKIYGYKNVIFNPVSIYQLADAILILIQKNFKG 215 +YG R + +L K+ L K+ +Y Y + + I +A+AI+ L Sbjct: 178 FFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPHA 237 Query: 216 -------------------ILNIVSDKPISKFEFLKIIEEYLKKK 241 + NI + P+ ++++ +E+ L + Sbjct: 238 DTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIE 282
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 110 bits (275), Expect = 5e-31 Identities = 70/273 (25%), Positives = 111/273 (40%), Gaps = 26/273 (9%) Query: 8 NLFSLEDKIILITGGNGHLGKAMCHALADYGATLILASRNIEKNKQLCSELTNLYKNQNI 67 N +E KI ITG +G+A+ LA GA + N EK +++ S L ++ Sbjct: 2 NAKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAE- 60 Query: 68 ALELDLESKQDTTIKIKNLIEKYGRIDILINNSYYGFSGKFHEMDYESWNRGIEGSLGTV 127 A D+ + + G IDIL+N + G H + E W + V Sbjct: 61 AFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGV 120 Query: 128 FLCTNAVINEMLKNKKGKIINIASMYGINAPNVYELYEGSLCEKYYNPVNYGVGKAGIIQ 187 F + +V M+ + G I+ + S N V + Y KA + Sbjct: 121 FNASRSVSKYMMDRRSGSIVTVGS----NPAGVPRTSMAA----------YASSKAAAVM 166 Query: 188 FTKYIAAVYGKEGIISNSISPGPF-----------PNFEIQKNQIFVERLTNKVPLKRIG 236 FTK + + I N +SPG N Q + +E +PLK++ Sbjct: 167 FTKCLGLELAEYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLA 226 Query: 237 KPEDLQGAIVFLCSDSSNYVNGHNLVIDGGWTI 269 KP D+ A++FL S + ++ HNL +DGG T+ Sbjct: 227 KPSDIADAVLFLVSGQAGHITMHNLCVDGGATL 259
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 76.0 bits (187), Expect = 1e-17 Identities = 44/238 (18%), Positives = 93/238 (39%), Gaps = 27/238 (11%) Query: 6 TILITGGTGSFGNRFIERILSEYNPKKIIIYSRDEFKQDLMKKNFVMKYGVEKTKKLRFF 65 L+TG G G +R+L + + + I + +++ +K+ + + +F Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGH-QVVGIDNLNDYYDVSLKQA---RLELLAQPGFQFH 57 Query: 66 IGDVRDKERLYRAFD--GVDYVIHAAAMKQVPACEYNPFEAIKTNIHGAENVIEAAIDRG 123 D+ D+E + F + V + V NP +N+ G N++E Sbjct: 58 KIDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNK 117 Query: 124 VKKVVALST---------------DKAVNPINLYGGTKLVSDKLFISANAYSGEKGTIFS 168 ++ ++ S+ D +P++LY TK ++ + A+ YS G + Sbjct: 118 IQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELM---AHTYSHLYGLPAT 174 Query: 169 VVRYGNVAGSRGS---VIPFFKQLLSQGKTELPITDIHMTRFWMVLDDAVNLVLKALK 223 +R+ V G G + F + + +GK+ M R + +DD +++ Sbjct: 175 GLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQD 232
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 37.8 bits (88), Expect = 3e-05 Identities = 28/168 (16%), Positives = 54/168 (32%), Gaps = 42/168 (25%) Query: 4 INLMITGASGFIGS-----------------NFIDKY-------------KNEYNIIPVD 33 + ++TGA+GFIG N D Y + + +D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 34 LL-KEKPENLSFDG-VDCILHLAA---LVHQMKGAAKEKYFEVNTELTRRIAEKAKIEGV 88 L +E +L G + + + + ++ Y + N I E + + Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHA--YADSNLTGFLNILEGCRHNKI 118 Query: 89 KHFVFYSTVKVYGYDGDLKNHNYVLNELSECNPKNDPYGESKWEAEKI 136 +H ++ S+ VYG N + + Y +K E + Sbjct: 119 QHLLYASSSSVYG-----LNRKMPFSTDDSVDHPVSLYAATKKANELM 161
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 85.2 bits (211), Expect = 3e-20 Identities = 56/295 (18%), Positives = 112/295 (37%), Gaps = 42/295 (14%) Query: 282 IFVTGGGGSIGSELINQIAKYNPKKIINIEINENASYLMELELKR--KYPYLDYKTEIAS 339 VTG G IG + ++ + +++ I+ N N Y + L+ R ++ Sbjct: 3 YLVTGAAGFIGFHVSKRLLE-AGHQVVGID-NLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 340 VRDFDKLDMLFNNYKPDILFHAAAHKHVPLMENNPEEAIKNNVFGTRNVAECCLKYKLES 399 + D + + LF + + +F + V NP +N+ G N+ E C K++ Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 400 VVLIST---------------DKAVNPTNIMGATKRVCEMIFQKYSERSSETKFVAVRFG 444 ++ S+ D +P ++ ATK+ E++ YS +RF Sbjct: 121 LLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSH-LYGLPATGLRFF 179 Query: 445 NVLGSNGS---VIPIFSKLIEERKNLTL-THKDIIRYFMTIPEAAQLVIEA--------- 491 V G G + F+K + E K++ + + + R F I + A+ +I Sbjct: 180 TVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPHADT 239 Query: 492 ---------ATIGKGGEILILDMGEPVKIYDLAKNMIKLSGSTVGIDIVGLRPGE 537 A + + PV++ D + + G +++ L+PG+ Sbjct: 240 QWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLPLQPGD 294
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 36.7 bits (85), Expect = 9e-05 Identities = 27/157 (17%), Positives = 53/157 (33%), Gaps = 21/157 (13%) Query: 33 EVDITNGDFLRAYIKTMHQNYKIDTIINCAAYNDVDKAETEKELCYKANAEAPANLAMIA 92 ++D+ + + + + + + V + +N N+ Sbjct: 58 KIDLADREGMTDLFA----SGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGC 113 Query: 93 SEIGATYITY-STDFVFNGMTTNYLYNESTGYTEEDEA-HPLSAYAKAKYEGELLV---S 147 ++ Y S+ V Y N ++ +D HP+S YA K EL+ S Sbjct: 114 RHNKIQHLLYASSSSV-------YGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYS 166 Query: 148 QIIENPENTSRIYIVRTSWVFGKGGM---NFVEKIIE 181 + P R + V W G+ M F + ++E Sbjct: 167 HLYGLPATGLRFFTVYGPW--GRPDMALFKFTKAMLE 201
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 84.4 bits (209), Expect = 1e-20 Identities = 85/367 (23%), Positives = 141/367 (38%), Gaps = 81/367 (22%) Query: 2 IIVTGGAGMIGSAFVWKLNEMGIKDILIVDKL-------RKEDKWLNIRKREYYDWIDKD 54 +VTG AG IG +L E G ++ +D L K+ + L + + + + D Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAG-HQVVGIDNLNDYYDVSLKQAR-LELLAQPGFQFHKID 60 Query: 55 -NLKEWLVCKENADNIEAVIHMGACSAT--TETDADFLMDNNFGYTKFLWNFCAEKNIKY 111 +E + + + E V A + + D+N + C I++ Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 112 -IYASSAATYGMGE-LGYNDDVSPEELQKLMPLNKYGYSKKFFDDWAF---KQKNQPKQW 166 +YASS++ YG+ + ++ D S + P++ Y +KK + A P Sbjct: 121 LLYASSSSVYGLNRKMPFSTDDSVDH-----PVSLYAATKKANELMAHTYSHLYGLPA-- 173 Query: 167 NGLKFFNVYGPQEYHKGR--MASMVFHTYNQYKENGYVKLFKSYKEG-----FKDGEQLR 219 GL+FF VYGP GR MA K K+ EG + G+ R Sbjct: 174 TGLRFFTVYGP----WGRPDMA--------------LFKFTKAMLEGKSIDVYNYGKMKR 215 Query: 220 DFVYVKDVVDIMYFMLVN--------DVKSG----------IYNIGTGKARSFMDLSMAT 261 DF Y+ D+ + + + V++G +YNIG MD A Sbjct: 216 DFTYIDDIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQAL 275 Query: 262 MRAASHNDNLDKNEVVKLIEM-PEDLQGRYQYFTEAKINKLRE-IGYTKEMHSLEEGVKD 319 D L ++ + P D+ T A L E IG+T E ++++GVK+ Sbjct: 276 ------EDALGIEAKKNMLPLQPGDV-----LETSADTKALYEVIGFTPET-TVKDGVKN 323 Query: 320 YVQNYLA 326 +V Y Sbjct: 324 FVNWYRD 330
>SECA#SecA protein signature. Length = 901 Score = 1106 bits (2862), Expect = 0.0 Identities = 449/916 (49%), Positives = 596/916 (65%), Gaps = 64/916 (6%) Query: 1 MIGSLLKKIFGTKNDREIKALTKEVEKINALESEYEKLSDEDLKNKTNIFKERLKNGETL 60 M+ LL K+FG++NDR ++ + K V INA+E E EKLSDE+LK KT F+ RL+ GE L Sbjct: 1 MLIKLLTKVFGSRNDRTLRRMRKVVNIINAMEPEMEKLSDEELKGKTAEFRARLEKGEVL 60 Query: 61 DDILVEAFATVREASKRVLGLRHYDVQLIGGMVLHQGKITEMKTGEGKTLVATCPVYLNA 120 ++++ EAFA VREASKRV G+RH+DVQL+GGMVL++ I EM+TGEGKTL AT P YLNA Sbjct: 61 ENLIPEAFAVVREASKRVFGMRHFDVQLLGGMVLNERCIAEMRTGEGKTLTATLPAYLNA 120 Query: 121 LAGHGVHVITVNDYLAKRDRDQMSRLYGFLGLSSGVILNGLPTDQRKKSYNSDITYGTNS 180 L G GVHV+TVNDYLA+RD + L+ FLGL+ G+ L G+P ++++Y +DITYGTN+ Sbjct: 121 LTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAYAADITYGTNN 180 Query: 181 EFGFDYLRDNMVSSLDQKVQRELNFCIVDEVDSILIDEARTPLIISGAAEDKIKWYQISF 240 E+GFDYLRDNM S +++VQR+L++ +VDEVDSILIDEARTPLIISG AED + Y+ Sbjct: 181 EYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVN 240 Query: 241 QVVSMLNRSYETEKIKNIKEKKAMNIPDEKWGDYEVDEKSRVIVFTEKGVKRVEEILKI- 299 +++ L I+++K + + G + VDEKSR + TE+G+ +EE+L Sbjct: 241 KIIPHL-----------IRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKE 289 Query: 300 ------DNLYAPEYVELTHFLNQALKAKELFKRDRDYLVRDNGEVVIIDEFTGRAMEGRR 353 ++LY+P + L H + AL+A LF RD DY+V+D GEV+I+DE TGR M+GRR Sbjct: 290 GIMDEGESLYSPANIMLMHHVTAALRAHALFTRDVDYIVKD-GEVIIVDEHTGRTMQGRR 348 Query: 354 YSDGLHQAIEAKEGVKIASENQTLATITLQNYFRMYKKLSGMTGTAETEATEFMHTYGLE 413 +SDGLHQA+EAKEGV+I +ENQTLA+IT QNYFR+Y+KL+GMTGTA+TEA EF Y L+ Sbjct: 349 WSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLD 408 Query: 414 VVVIPTNLPVIRKDDADLVYKTKKEKINSIIDRIQGLYEKGQPVLVGTISIKSSEELSEL 473 VV+PTN P+IRKD DLVY T+ EKI +II+ I+ KGQPVLVGTISI+ SE +S Sbjct: 409 TVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNE 468 Query: 474 LKKRKIPHNVLNAKYHAKEAEIVAQAGRYKAVTIATNMAGRGTDIMLGGNPEFMALAEVD 533 L K I HNVLNAK+HA EA IVAQAG AVTIATNMAGRGTDI+LGG+ + AEV Sbjct: 469 LTKAGIKHNVLNAKFHANEAAIVAQAGYPAAVTIATNMAGRGTDIVLGGSWQ----AEVA 524 Query: 534 SRDDENFPEVFAKYQEQCANEKEQVLALGGLFILGTERHESRRIDNQLRGRSGRQGDPGE 593 + + E K + + VL GGL I+GTERHESRRIDNQLRGRSGRQGD G Sbjct: 525 AL-ENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGS 583 Query: 594 SEFYLSLEDDLMRLFGSERVMIWMDRLKLPEGEPITHRMINSAIEKAQKKIEARNFGIRK 653 S FYLS+ED LMR+F S+RV M +L + GE I H + AI AQ+K+E+RNF IRK Sbjct: 584 SRFYLSMEDALMRIFASDRVSGMMRKLGMKPGEAIEHPWVTKAIANAQRKVESRNFDIRK 643 Query: 654 NLLEFDDVMNKQRTAIYESRNEALAIDNLKDRILGMLQRNITEKVYEKFAPE-MREDWDI 712 LLE+DDV N QR AIY RNE L + ++ + I + + + P+ + E WDI Sbjct: 644 QLLEYDDVANDQRRAIYSQRNELLDVSDVSETINSIREDVFKATIDAYIPPQSLEEMWDI 703 Query: 713 DGLNEYLKDFYVYE---ERDDKAYLRSTKEEYIERIYNALVEQYNNKEAELGSDLMRKLE 769 GL E LK+ + + +E ERI +E Y KE +G+++MR E Sbjct: 704 PGLQERLKNDFDLDLPIAEWLDKEPELHEETLRERILAQSIEVYQRKEEVVGAEMMRHFE 763 Query: 770 KHILFDVVDNRWRGHLKSLDALRESIYLRAYGQRDPVTEYKLISSQIFEEMIATIQEQAT 829 K ++ +D+ W+ HL ++D LR+ I+LR Y Q+DP EYK S +F M+ +++ + Sbjct: 764 KGVMLQTLDSLWKEHLAAMDYLRQGIHLRGYAQKDPKQEYKRESFSMFAAMLESLKYEVI 823 Query: 830 SFLFKVVV------------------------------------NTEPVKDEKNEIEADG 853 S L KV V + + ++ + Sbjct: 824 STLSKVQVRMPEEVEELEQQRRMEAERLAQMQQLSHQDDDSAAAAALAAQTGERKVGRND 883 Query: 854 LCPCGSGKPYEKCCGR 869 CPCGSGK Y++C GR Sbjct: 884 PCPCGSGKKYKQCHGR 899
>PF05272#Virulence-associated E family protein Length = 892 Score = 32.0 bits (72), Expect = 0.002 Identities = 21/109 (19%), Positives = 41/109 (37%), Gaps = 19/109 (17%) Query: 20 EKYSLNKESAHNWETTMSKVMVAEATNP--DWYGEENPLVNFRKQGKISEKEYYFLDYLG 77 Y + SA E ++ +P DW V ++ ++ E + + LG Sbjct: 507 TTYGTGEASAQTTEQAINVAADMNRVHPFRDW-------VKAQQWDEVPRLEKWLVHVLG 559 Query: 78 KTPANEISDDDFDRFTKILISYVKKLPRKFII-EVTNIKDPKGLVDYMV 125 KTP D + + Y++ + + ++ V + +P DY V Sbjct: 560 KTP---------DDYKPRRLRYLQLVGKYILMGHVARVMEPGCKFDYSV 599
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 28.6 bits (64), Expect = 0.020 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 2/32 (6%) Query: 1 MKQYLVIGLGRF-GASVAKTLYSAGEIVLGVD 31 MK YLV G F G V+K L AG V+G+D Sbjct: 1 MK-YLVTGAAGFIGFHVSKRLLEAGHQVVGID 31
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 30.6 bits (69), Expect = 0.016 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%) Query: 314 IIFVIKLLFTAISYSTGFAGGIFLPMLVLGAIIGKIFGETVDIFAQTGADFT 365 + ++ L A+ Y+ A FL +L +G I+ I G T + AD T Sbjct: 74 PVLLVSLAGAAVDYAI-MATAPFLWVLYIGRIVAGITGATGAVAGAYIADIT 124
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 59.9 bits (145), Expect = 1e-12 Identities = 20/102 (19%), Positives = 38/102 (37%) Query: 64 YYNRACSYYCSNKYDKAIEDYDKAIKLNPNDACYFNNRGHSYFALNKYSEAIEDYDKAIK 123 Y+ A + Y S KY+ A + + L+ D+ +F G A+ +Y AI Y Sbjct: 39 LYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAI 98 Query: 124 LDPNNASYYYKRGFSYYALNKYDKAIEDYNKAIKLDPNNAAY 165 +D + + + +A A +L + + Sbjct: 99 MDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELIADKTEF 140 Score = 55.7 bits (134), Expect = 4e-11 Identities = 23/138 (16%), Positives = 49/138 (35%), Gaps = 11/138 (7%) Query: 123 KLDPNNASYYYKRGFSYYALNKYDKAIEDYNKAIKLDPNNAAYFSSRGDIYYYEKAYNKS 182 ++ + Y F+ Y KY+ A + + LD ++ +F G Y+ + Sbjct: 30 EISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLA 89 Query: 183 IEDYNKAIKLDPNNAFYYDNRGLAYEKLKKYKEAINDYNKAIKLNPNNAFYCYNRGFTYN 242 I Y+ +D + + + + EA + A +L + + Sbjct: 90 IHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELIADKTEF--------- 140 Query: 243 KLKKYKEAINDYDKAIKL 260 K+ ++ +AIKL Sbjct: 141 --KELSTRVSSMLEAIKL 156 Score = 52.6 bits (126), Expect = 3e-10 Identities = 21/103 (20%), Positives = 36/103 (34%), Gaps = 3/103 (2%) Query: 235 YNRGFTYNKLKKYKEAINDYDKAIKLDPNNASYFNNRGVAYNNLGEYSKALEDYDKAIKL 294 Y+ F + KY++A + LD ++ +F G +G+Y A+ Y + Sbjct: 40 YSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIM 99 Query: 295 NPNYTFAYNNKGITFDNLGEFEEAIMNYNKAIEL---DPSYKS 334 + + GE EA A EL +K Sbjct: 100 DIKEPRFPFHAAECLLQKGELAEAESGLFLAQELIADKTEFKE 142 Score = 50.3 bits (120), Expect = 2e-09 Identities = 14/100 (14%), Positives = 37/100 (37%) Query: 168 SRGDIYYYEKAYNKSIEDYNKAIKLDPNNAFYYDNRGLAYEKLKKYKEAINDYNKAIKLN 227 S Y Y + + + LD ++ ++ G + + +Y AI+ Y+ ++ Sbjct: 41 SLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMD 100 Query: 228 PNNAFYCYNRGFTYNKLKKYKEAINDYDKAIKLDPNNASY 267 + ++ + + EA + A +L + + Sbjct: 101 IKEPRFPFHAAECLLQKGELAEAESGLFLAQELIADKTEF 140 Score = 49.5 bits (118), Expect = 4e-09 Identities = 15/100 (15%), Positives = 34/100 (34%), Gaps = 3/100 (3%) Query: 202 NRGLAYEKLKKYKEAINDYNKAIKLNPNNAFYCYNRGFTYNKLKKYKEAINDYDKAIKLD 261 + + KY++A + L+ ++ + G + +Y AI+ Y +D Sbjct: 41 SLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMD 100 Query: 262 PNNASYFNNRGVAYNNLGEYSKALEDYDKAIKL---NPNY 298 + + GE ++A A +L + Sbjct: 101 IKEPRFPFHAAECLLQKGELAEAESGLFLAQELIADKTEF 140 Score = 49.5 bits (118), Expect = 4e-09 Identities = 15/106 (14%), Positives = 37/106 (34%), Gaps = 2/106 (1%) Query: 26 NDIYYNNRGLSYFLLKKYEEAINDYNRAIELNLNNASYYYNRACSYYCSNKYDKAIEDYD 85 +Y + + + KYE+A + L+ ++ ++ +YD AI Y Sbjct: 37 EQLY--SLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYS 94 Query: 86 KAIKLNPNDACYFNNRGHSYFALNKYSEAIEDYDKAIKLDPNNASY 131 ++ + + + + +EA A +L + + Sbjct: 95 YGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELIADKTEF 140 Score = 48.4 bits (115), Expect = 9e-09 Identities = 21/146 (14%), Positives = 51/146 (34%), Gaps = 11/146 (7%) Query: 89 KLNPNDACYFNNRGHSYFALNKYSEAIEDYDKAIKLDPNNASYYYKRGFSYYALNKYDKA 148 +++ + + + + KY +A + + LD ++ ++ G A+ +YD A Sbjct: 30 EISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLA 89 Query: 149 IEDYNKAIKLDPNNAAYFSSRGDIYYYEKAYNKSIEDYNKAIKLDPNNAFYYDNRGLAYE 208 I Y+ +D + + + ++ A +L + + Sbjct: 90 IHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELIADKTEF--------- 140 Query: 209 KLKKYKEAINDYNKAIKLNPNNAFYC 234 K+ ++ +AIKL C Sbjct: 141 --KELSTRVSSMLEAIKLKKEMEHEC 164 Score = 37.2 bits (86), Expect = 6e-05 Identities = 9/68 (13%), Positives = 27/68 (39%) Query: 23 EPNNDIYYNNRGLSYFLLKKYEEAINDYNRAIELNLNNASYYYNRACSYYCSNKYDKAIE 82 + + ++ G + +Y+ AI+ Y+ +++ + ++ A + +A Sbjct: 66 DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAES 125 Query: 83 DYDKAIKL 90 A +L Sbjct: 126 GLFLAQEL 133
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 26.6 bits (58), Expect = 0.035 Identities = 29/110 (26%), Positives = 38/110 (34%), Gaps = 13/110 (11%) Query: 12 KEEEKPAEQAAVEATATEAPATETTEAAAEAKTFSLKTEDGKEFTLVVAADGSTATLTDA 71 EE A A +ETTE AE KT + E D + T + Sbjct: 1013 NNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNE------QDATETTAQNR 1066 Query: 72 EGKATELKNAETASGERYADEAGNEVAMKGAEGILTLGDLKEVPVTVEAK 121 E A+ A A+ NEVA G+E T + TVE + Sbjct: 1067 E-------VAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKE 1109
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 706 bits (1825), Expect = 0.0 Identities = 274/568 (48%), Positives = 395/568 (69%) Query: 11 IKGIPASPGIAIGKAFLYKENKLEIDEKSNLSKEEEIERLVKGREIAKKQLEEIKENTLK 70 I GI AS G+AI KAF++ E ++I++ S EIE+L E +K++L IK+ T Sbjct: 5 ITGIAASSGVAIAKAFIHLEPNVDIEKTSITDVSTEIEKLTAALEKSKEELRAIKDQTEA 64 Query: 71 KLGKDKADIFEGHITLLEDEELFSEIDSKISQKKCTAEFALNEAIDEYATMLANLEDTYF 130 +G DKA+IF H+ +L+D EL I KI ++ AE+AL E D + +M ++++ Y Sbjct: 65 SMGADKAEIFAAHLLVLDDPELVDGIKGKIENEQMNAEYALKEVSDMFVSMFESMDNEYM 124 Query: 131 KERAGDLRDIGKRWLYGVMNEQIVDLSKLEPETIIVAKELNPSDTAQINLDNVLAFVTEI 190 KERA D+RD+ KR L ++ + L+ + ET+I+A++L PSDTAQ+N V F T+I Sbjct: 125 KERAADIRDVSKRVLGHLIGVETGSLATIAEETVIIAEDLTPSDTAQLNKQFVKGFATDI 184 Query: 191 GGKTAHSSIMARSLELPAVVGVGAVLDELEDNQILIVDALKGEVIVSPDVETLQIYKEKR 250 GG+T+HS+IM+RSLE+PAVVG V ++++ ++IVD ++G VIV+P E ++ Y+EKR Sbjct: 185 GGRTSHSAIMSRSLEIPAVVGTKEVTEKIQHGDMVIVDGIEGIVIVNPTEEEVKAYEEKR 244 Query: 251 EKFLKEKEELKALKDKEAISKDGIKVDVWGNIGSPNDVKGIISNGGFGVGLYRTEFLFME 310 F K+K+E L + + +KDG V++ NIG+P DV G+++NGG G+GLYRTEFL+M+ Sbjct: 245 AAFEKQKQEWAKLVGEPSTTKDGAHVELAANIGTPKDVDGVLANGGEGIGLYRTEFLYMD 304 Query: 311 KDSFPTEDEQFEAYKIVAEELKGYPVTIRTMDIGGDKSLPYMELPKEENPFLGWRAIRVC 370 +D PTE+EQFEAYK V + + G PV IRT+DIGGDK L Y++LPKE NPFLG+RAIR+C Sbjct: 305 RDQLPTEEEQFEAYKEVVQRMDGKPVVIRTLDIGGDKELSYLQLPKELNPFLGFRAIRLC 364 Query: 371 LDREEILRTQFKALLRASKYGKIKIMLPMIMDIVEVRKAKAIFEECKKELQEKGIEFDKN 430 L++++I RTQ +ALLRAS YG +K+M PMI + E+R+AKAI +E K +L +G++ + Sbjct: 365 LEKQDIFRTQLRALLRASTYGNLKVMFPMIATLEELRQAKAIMQEEKDKLLSEGVDVSDS 424 Query: 431 IMLGIMVETPAVAFRAKYFAKECDFFSIGTNDLTQYTLAVDRGNEKIANLYDTYNPSVLQ 490 I +GIMVE P+ A A FAKE DFFSIGTNDL QYT+A DR NE+++ LY Y+P++L+ Sbjct: 425 IEVGIMVEIPSTAVAANLFAKEVDFFSIGTNDLIQYTMAADRMNERVSYLYQPYHPAILR 484 Query: 491 AIKMLIDGAHDGGIKISMCGEFAGDENAIAILFGMGLDAFSMSGISIPRVKRIIMKLEKK 550 + M+I AH G + MCGE AGDE AI +L G+GLD FSMS SI + ++KL K+ Sbjct: 485 LVDMVIKAAHSEGKWVGMCGEMAGDEVAIPLLLGLGLDEFSMSATSILPARSQLLKLSKE 544 Query: 551 ECQNLVERVLSLSTASEIKEEIKKFMEK 578 E + ++ L L TA E+++ +KK K Sbjct: 545 ELKPFAQKALMLDTAEEVEQLVKKTYLK 572
>TYPE3OMGPROT#Type III secretion system outer membrane G protein family signature. Length = 607 Score = 27.2 bits (60), Expect = 0.024 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 10/72 (13%) Query: 55 VEATVQYKKQLFLDQKIEVR-----ITKIEIKGLKIIF--EHEI-YNGQDLVITGTATVL 106 +E Q L +Q+ ++R IEI LK + I Y ++ G AT+L Sbjct: 158 LELVEQTAAAL--EQQTQIRSEKTGALAIEIFPLKYASASDRTIHYRDDEVAAPGVATIL 215 Query: 107 AYNYEEQKVKKV 118 + +++V Sbjct: 216 QRVLSDATIQQV 227
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 47.1 bits (112), Expect = 2e-07 Identities = 41/178 (23%), Positives = 69/178 (38%), Gaps = 41/178 (23%) Query: 164 EVLEKYAKDLVELAREGK--------IDPIIGRDSEIRRAIQIISRRTKND-PILI-GEP 213 E++ + L E R P++GR + ++ ++++R + D ++I GE Sbjct: 110 ELIGIIGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGES 169 Query: 214 GVGKTAIVEGLAQR----------ILNGDVPESLKNKKIFSLDMGALV-AGAKYKGEFEE 262 G GK + L I +P L ++F + GA A + G FE+ Sbjct: 170 GTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQ 229 Query: 263 RMKGVLKEVEESNGNIILFIDEIHTIVGAGKGEGSLDAGNMLKPMLARGELRVIGATT 320 G LF+DEI G+ +DA L +L +GE +G T Sbjct: 230 AEGGT------------LFLDEI--------GDMPMDAQTRLLRVLQQGEYTTVGGRT 267 Score = 32.5 bits (74), Expect = 0.008 Identities = 36/210 (17%), Positives = 67/210 (31%), Gaps = 48/210 (22%) Query: 580 GQDEAIKSVADTMLRSVAGLKDPNRPMGSFIFLGPTGVGKTYLAKTLAYNLFDSEDNVVR 639 G+ A++ + + R + + G +G GK +A+ L V Sbjct: 141 GRSAAMQEIYRVLAR-LMQTDLT------LMITGESGTGKELVARALHDYGKRRNGPFVA 193 Query: 640 IDMSEYMDKFSVTRLIGAPPGYVGYEEGGQLTEAIRTKPYSV-------ILFDEIEKAHP 692 I+M+ + L G E G T A + DEI Sbjct: 194 INMAAIPRDLIESELFGH--------EKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDMPM 245 Query: 693 DVFNVLLQVLDDG---RLTDGQGRIVDFKNTLIIMTSNIGSHFILEDPNLSEDTREKVAD 749 D LL+VL G + D + I+ +N +D ++ + Sbjct: 246 DAQTRLLRVLQQGEYTTVGGRTPIRSDVR---IVAATN-------------KDLKQSINQ 289 Query: 750 ELKARFKPEFLNRIDEIITFKALDLPAIKE 779 F+ + R++ + L LP +++ Sbjct: 290 ---GLFREDLYYRLNVV----PLRLPPLRD 312
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 30.4 bits (68), Expect = 0.004 Identities = 6/52 (11%), Positives = 22/52 (42%), Gaps = 6/52 (11%) Query: 177 PLERLTKQEREKIVKA----LYEKGIFNLKDAINFVAKKLSCSPTTVYRYVG 224 ++ ++ R+ I+ ++G+ + ++ +AK + +Y + Sbjct: 4 KTKQEAQETRQHILDVALRLFSQQGVSST--SLGEIAKAAGVTRGAIYWHFK 53
>SUBTILISIN#Subtilisin serine protease family (S8) signature. Length = 326 Score = 50.6 bits (121), Expect = 1e-08 Identities = 62/360 (17%), Positives = 101/360 (28%), Gaps = 110/360 (30%) Query: 30 GDKVKVGVLDG-------DFINKKNYLENKYGNIEILERNYNPKHSNHGELVLKVLREKN 82 G VKV VLD D + N + + + + ++ HG V Sbjct: 40 GRGVKVAVLDTGCDADHPDLKARIIGGRN-FTDDDEGDPEIFKDYNGHGTHV-------- 90 Query: 83 KLGIIAGSIGENDDFSGKEGTTVIPKLE-------------TYEKVLEKFNP--NQKVKV 127 AG+I ++ +G G V P+ + Y+ +++ QKV + Sbjct: 91 -----AGTIAATENENGVVG--VAPEADLLIIKVLNKQGSGQYDWIIQGIYYAIEQKVDI 143 Query: 128 FSQSWGVPETIGSYISKSEEERMRAIAPGQTSSEGRKILDFYKKEVNKDTLFIWANGNTL 187 S S G G E + KK V L + A GN Sbjct: 144 ISMSLG-----GPEDVPELHEAV-------------------KKAVASQILVMCAAGNEG 179 Query: 188 VNNQNQVVLFNDAYYQGGLPHLYSELEKGWITVVGVKKKDGNMLNKHYTDTAHLAYPGNA 247 + L Y I+V + + + N Sbjct: 180 DGDDRTDELGYPGCY------------NEVISVGAINFDRHA---------SEFSNSNN- 217 Query: 248 KWWAISADAEVVDS-----KGVTHRGSSFAAPRVAKVAALVAEKY---DW--MTADQVRQ 297 + A E + S K T G+S A P VA AL+ + +T ++ Sbjct: 218 -EVDLVAPGEDILSTVPGGKYATFSGTSMATPHVAGALALIKQLANASFERDLTEPELYA 276 Query: 298 TLFTTTDRTNIDENETYIRNIVTEPDEKYGWGMLNRERALKGPGAFINIRRQYQY-SPSS 356 L T + G G+L + + +R S +S Sbjct: 277 QLIKRTIPLGNS-------------PKMEGNGLLYLTAVEE-LSRIFDTQRVAGILSTAS 322
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 42.2 bits (99), Expect = 1e-06 Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 3/87 (3%) Query: 345 GKYKEAIKKYEYALSLDEEGKDERYINSQLGWCYRQLEEYKKAIKFHKKAKELGRNDIWI 404 GKY++A K ++ LD D R+ LG C + + +Y AI + + + Sbjct: 50 GKYEDAHKVFQALCVLDHY--DSRFFLG-LGACRQAMGQYDLAIHSYSYGAIMDIKEPRF 106 Query: 405 NMEIGMCYAKLEEYEKAAENYLIAYEM 431 C + E +A +A E+ Sbjct: 107 PFHAAECLLQKGELAEAESGLFLAQEL 133 Score = 34.1 bits (78), Expect = 9e-04 Identities = 16/90 (17%), Positives = 35/90 (38%), Gaps = 1/90 (1%) Query: 557 YNPDTREEALKYFERAIELGRNDAWVWEMRGTLLFDLRKYEEALDSFRKAYAL-NDDGWY 615 Y E+A K F+ L D+ + G + +Y+ A+ S+ + + + Sbjct: 47 YQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIKEPRF 106 Query: 616 LYSIGRCLRRLERYEEALENLLNSRQISLN 645 + CL + EA L ++++ + Sbjct: 107 PFHAAECLLQKGELAEAESGLFLAQELIAD 136 Score = 33.7 bits (77), Expect = 0.001 Identities = 22/109 (20%), Positives = 39/109 (35%) Query: 79 LKNIINKSKNDEWLYSELGYCLAEQGKQEEALESYFKAIELNRNDAWIFTRIGMCYKNMD 138 + + S + L + + GK E+A + + L+ D+ F +G C + M Sbjct: 25 IAMLNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMG 84 Query: 139 RKEEAIEYYLKALEQKEDDIFIMSDIAWLYDSLGEFEKALKYLERLEEL 187 + + AI Y + A GE +A L +EL Sbjct: 85 QYDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQEL 133 Score = 31.4 bits (71), Expect = 0.007 Identities = 20/115 (17%), Positives = 44/115 (38%), Gaps = 3/115 (2%) Query: 181 LERLEELGQNDAWTSTEYGYCLAKLKRFDEAIVKINRALEAEDEDKDTAYIYSQLGWCQR 240 + L E+ + + + ++++A K+ +AL D D+ + LG C++ Sbjct: 25 IAMLNEISSDTLEQLYSLAFNQYQSGKYEDAH-KVFQALCVLDH-YDSRFFLG-LGACRQ 81 Query: 241 HLEKYDEAIETFLKAKKWARNDAWINIELGHCYKAKNEKEKALEFYLKAEKFDKN 295 + +YD AI ++ + C K E +A A++ + Sbjct: 82 AMGQYDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELIAD 136 Score = 30.3 bits (68), Expect = 0.016 Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 3/105 (2%) Query: 296 DISLLSDIAWHYDALDRNEEALKYIKRVVRLGRDDAWINEEYGACLSGLGKYKEAIKKYE 355 + L +A++ + E+A K + + L D+ GAC +G+Y AI Y Sbjct: 35 TLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYS 94 Query: 356 YALSLDEEGKDERYINSQLGWCYRQLEEYKKAIKFHKKAKELGRN 400 Y +D + + C Q E +A A+EL + Sbjct: 95 YGAIMDIKEPRFPF---HAAECLLQKGELAEAESGLFLAQELIAD 136 Score = 29.1 bits (65), Expect = 0.037 Identities = 14/62 (22%), Positives = 25/62 (40%) Query: 374 LGWCYRQLEEYKKAIKFHKKAKELGRNDIWINMEIGMCYAKLEEYEKAAENYLIAYEMDR 433 L + Q +Y+ A K + L D + +G C + +Y+ A +Y MD Sbjct: 42 LAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDI 101 Query: 434 DD 435 + Sbjct: 102 KE 103
>THERMOLYSIN#Thermolysin metalloprotease (M4) family signature. Length = 544 Score = 33.1 bits (75), Expect = 4e-04 Identities = 23/123 (18%), Positives = 44/123 (35%), Gaps = 12/123 (9%) Query: 23 AELNEQQAKDIIKKEVPNGQITKFKLDKENGKMVYEIKVMDGNIEK---EYEIDAETGAI 79 ++ ++ K+ E D+E ++ YE+ V Y IDA G + Sbjct: 149 QDVADRVTKERPAAEEGKPTRLVIYPDEETPRLAYEVNVRFLTPVPGNWIYMIDAADGKV 208 Query: 80 LK----MEQEQKGNK----NANSVNNPKISSDKAKEI-ALKNSKNGKFKEIELKHKNGVL 130 L M++ + G ++V + K I +S G + + +G+ Sbjct: 209 LNKWNQMDEAKPGGAQPVAGTSTVGVGRGVLGDQKYINTTYSSYYGYYYLQDNTRGSGIF 268 Query: 131 VYD 133 YD Sbjct: 269 TYD 271 Score = 32.7 bits (74), Expect = 5e-04 Identities = 20/145 (13%), Positives = 47/145 (32%), Gaps = 21/145 (14%) Query: 26 NEQQAKDIIKKEVPNGQITKFKLDKE-NGKMVYE----IKVMDGNI-----EKEYEIDAE 75 ++ +I ++ T + ++ + V DG + +D Sbjct: 71 QARERLSLIGNKLDELGHTVMRFEQAIAASLCMGAVLVAHVNDGELSSLSGTLIPNLDKR 130 Query: 76 TGAILKMEQEQKGNKNANSVNNPKISSDKAKEIALKNSKNGKF--KEIELKHKNGVLVYD 133 T Q+ A +++ ++ ++ GK I + L Y+ Sbjct: 131 TLKTEAAISIQQAEMIAKQDVADRVTKERPA------AEEGKPTRLVIYPDEETPRLAYE 184 Query: 134 VEI---AEGFMDREFLIDANTGEIL 155 V + + ++IDA G++L Sbjct: 185 VNVRFLTPVPGNWIYMIDAADGKVL 209
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 125 bits (315), Expect = 2e-33 Identities = 72/300 (24%), Positives = 134/300 (44%), Gaps = 29/300 (9%) Query: 114 ETFGENIKVSTLSKVNKLVVSAERDILENAISIIEDIDKNPKQVKITSQILDISNNLFEE 173 +NI + + N L+V+A D++ + +I +D QV + + I ++ + Sbjct: 304 AALDKNIIIKAHGQTNALIVTAAPDVMNDLERVIAQLDIRRPQVLVEAIIAEVQDADGLN 363 Query: 174 LGFDWVYKQNVESQERNSLTAMILGKAGLN--------------GVGSTVNIVRQFHNKS 219 LG W K +Q NS + AG N + S I F+ + Sbjct: 364 LGIQWANKNAGMTQFTNSGLPISTAIAGANQYNKDGTVSSSLASALSSFNGIAAGFYQGN 423 Query: 220 DVLSTGINLLEATNDLVVSSVPTLMIASGEEGEFKVTEEV--VVGIKTHREDKKDRYSEP 277 + + L ++ + + P+++ E F V +EV + G +T D ++ Sbjct: 424 WAML--LTALSSSTKNDILATPSIVTLDNMEATFNVGQEVPVLTGSQTTSGDNI--FNTV 479 Query: 278 VFKEAGLIMKVKPIIKDNDYIILEISLELSDFKFKKNVLNLKDINSGTYNSEGGSKVGRG 337 K G+ +KVKP I + D ++LEI E+S ++ D S T + G + R Sbjct: 480 ERKTVGIKLKVKPQINEGDSVLLEIEQEVS---------SVADAASSTSSDLGATFNTRT 530 Query: 338 LTTKVRVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDMYIKLK 397 + V V +G+T+++GGL + K+P+LGDIP+I F++T+KK ++ + ++ Sbjct: 531 VNNAVLVGSGETVVVGGLLDKSVSDTADKVPLLGDIPVIGALFRSTSKKVSKRNLMLFIR 590 Score = 31.4 bits (71), Expect = 0.007 Identities = 12/71 (16%), Positives = 32/71 (45%), Gaps = 2/71 (2%) Query: 95 TKTFSLFNVSPDEVSKILHETFGEN--IKVSTLSKVNKLVVSAERDILENAISIIEDIDK 152 T+ L NV+ +++ +L + V N L+++ +++ ++I+E +D Sbjct: 129 TRVVPLTNVAARDLAPLLRQLNDNAGVGSVVHYEPSNVLLMTGRAAVIKRLLTIVERVDN 188 Query: 153 NPKQVKITSQI 163 + +T + Sbjct: 189 AGDRSVVTVPL 199
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 171 bits (436), Expect = 3e-53 Identities = 85/348 (24%), Positives = 148/348 (42%), Gaps = 44/348 (12%) Query: 1 MSILVCGGAGYIGSHVVKYLLEKNEDVVVVDSLITGHIDAVDEKAHLEL----------G 50 M LV G AG+IG HV K LLE VV +D+L + D ++A LEL Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYY-DVSLKQARLELLAQPGFQFHKI 59 Query: 51 DLKDEEFLNRVFEKYQIDGVIDFAAFSLVGESVGEPLKYFENNFYGTLCLLKVMKNNNVD 110 DL D E + +F + V V S+ P Y ++N G L +L+ ++N + Sbjct: 60 DLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQ 119 Query: 111 KIVFSSTAATYGEAENMPILETDRTE-PTNPYGESKLAVEKMFKWCANAYGLKYTALRYF 169 ++++S+++ YG MP D + P + Y +K A E M ++ YGL T LR+F Sbjct: 120 HLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFF 179 Query: 170 NVAGAYPSGEIGEAHTCETHLIPLILQVALGQREKISIYGDDYPTPDGTCIRDYIHVMDL 229 V G P G A T + + + I +Y G RD+ ++ D+ Sbjct: 180 TVYG--PWGRPDMALFKFTKAML--------EGKSIDVYN------YGKMKRDFTYIDDI 223 Query: 230 ADAHYLALNRL---------RNGGDS------QIFNLGNGEGFSVKEVIEVTRKVTGYPI 274 A+A + + G + +++N+GN + + I+ G Sbjct: 224 AEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEA 283 Query: 275 PAEVSPRRAGDPARLIASSKKAIDELKWKPKYDKLEQIIETAWNWHKN 322 + P + GD A +K + + + P+ ++ ++ NW+++ Sbjct: 284 KKNMLPLQPGDVLETSADTKALYEVIGFTPETT-VKDGVKNFVNWYRD 330
>MICOLLPTASE#Microbial collagenase metalloprotease (M9) signature. Length = 1104 Score = 28.9 bits (64), Expect = 0.023 Identities = 26/102 (25%), Positives = 36/102 (35%), Gaps = 4/102 (3%) Query: 114 TSYKNGLIDGLMKNYYPNGNIRSEMLLKKEVLDGITRTYYKNGKLKVEVSYQNGVKVGVQ 173 T + D + GN++ + V GIT T YK G L V Y G V Sbjct: 889 TLSEEDYSDKYYFDVAKKGNVKITLNNLNSV--GITWTLYKEGDLNNYVLYATGNDGTVL 946 Query: 174 KGYY--QNGKLKIEHPIDKNGLTTGTVKVYYPSGKIMAEESY 213 KG + G+ + N T TV V + E + Sbjct: 947 KGEKTLEPGRYYLSVYTYDNQSGTYTVNVKGNLKNEVKETAK 988
>CLENTEROTOXN#Clostridium enterotoxin signature. Length = 319 Score = 25.8 bits (56), Expect = 0.032 Identities = 9/47 (19%), Positives = 20/47 (42%) Query: 52 YNKYFKFEILQVPLGNVSKDKTSDLVKLIETKGLDIEINLDKDEDFF 98 Y Y K++ +++ GN+S D + + I + + D+ Sbjct: 133 YATYRKYQAIRISHGNISDDGSIYKLTGIWLSKTSADSLGNIDQGSL 179
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 60.2 bits (146), Expect = 4e-13 Identities = 24/113 (21%), Positives = 48/113 (42%), Gaps = 3/113 (2%) Query: 4 RVVVVEDETLTRIDLIEILKENGYDVVGEAADGIEAVEVCKKLQPDIVLLDIKIPYISGL 63 ++V +D+ R L + L GYDV ++ D+V+ D+ +P + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 64 KVANILKEEGFKGCVIILTAYNIAEYIQEASNTIVMGYILKP--IDEVIFLER 114 + +K+ V++++A N +AS Y+ KP + E+I + Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116
>PF06580#Sensor histidine kinase Length = 349 Score = 42.5 bits (100), Expect = 2e-06 Identities = 28/187 (14%), Positives = 72/187 (38%), Gaps = 28/187 (14%) Query: 279 NNLQTVASLLRIQKRRVKNAETKKILDETINRILSIAITHEILSATGMDTISIKHILEIL 338 N L + +L+ + +++L LS + L + +S+ L + Sbjct: 177 NALNNIRALILED-----PTKAREMLTS-----LS-ELMRYSLRYSNARQVSLADELT-V 224 Query: 339 CQNYFK-NNVDKSKKIEFNINGDEFSISSDKATSVALVVNEIVQNATEHAFIGR-DSGKV 396 +Y + ++ +++F + + ++V +V+N +H GK+ Sbjct: 225 VDSYLQLASIQFEDRLQFENQINP---AIMDVQVPPMLVQTLVENGIKHGIAQLPQGGKI 281 Query: 397 IIKILKGEKFSKIKISDNGVGMEVN-RETNNMGLLIISSLVKDKLKG------NLEIRSK 449 ++K K +++ + G N +E+ GL V+++L+ +++ K Sbjct: 282 LLKGTKDNGTVTLEVENTGSLALKNTKESTGTGL----QNVRERLQMLYGTEAQIKLSEK 337 Query: 450 KDKGTTI 456 + K + Sbjct: 338 QGKVNAM 344
>MICOLLPTASE#Microbial collagenase metalloprotease (M9) signature. Length = 1104 Score = 29.3 bits (65), Expect = 0.037 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 3/52 (5%) Query: 55 TLKDLKENPAVPYEEDE-VTRIIIDDLNLQIYDEIKDW-TVSDLREWLLSEE 104 +L + +N VP DE V D+N +I ++IK+ + DL + + Sbjct: 639 SLLNNIDNLDVPLVSDEYVNGHEAKDIN-EITNDIKEVSNIKDLSSNVEKSQ 689
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 28.5 bits (63), Expect = 0.019 Identities = 29/179 (16%), Positives = 54/179 (30%), Gaps = 25/179 (13%) Query: 2 KDKEIKEEVLKEEINKEVNEKKKCECEEGKEEAHEHKNDEHACCGKHNHKEEIEKLKAEI 61 + KE + KE E EK K E E+ +E K E ++ Sbjct: 1091 ETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVS----PKQEQSETVQPQAEPA 1146 Query: 62 EEWKNSFLRKQADFQNFTKRKEKEVDELKKFASEKIITQFLGSLDNFERAIESSSESKDF 121 E + K+ Q + ++ K S N E+ + S+ Sbjct: 1147 RENDPTVNIKEPQSQT---NTTADTEQPAKETSS-----------NVEQPVTESTTVNTG 1192 Query: 122 DSLLQGVEMIVRNLKDIMSSEDVEEIPTEGAFNPEYHHAVGVETSEDKKEDEIVKVLQK 180 +S +V N ++ + + +E + P+ H V + E + Sbjct: 1193 NS-------VVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDR 1244
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 165 bits (420), Expect = 3e-48 Identities = 70/354 (19%), Positives = 135/354 (38%), Gaps = 39/354 (11%) Query: 2 SKIIGIDLGTTNSCVAVMEGGSATIIPNSEGARTTPSVVNIKDNGEVVVGEIAKRQAVTN 61 S + IDLGT N+ + V G P+ R + VG AK+ Sbjct: 10 SNDLSIDLGTANTLIYVKGQGIVLNEPSVVAIRQDRAGSP---KSVAAVGHDAKQMLGRT 66 Query: 62 PTSTVSSIKTHMGSDYKVEIFGKKYTPQEISAKTLQKLKKDAEAYLGEEVKEAVITVPAY 121 P + +++I+ K + + +++ ++++ ++ ++ VP Sbjct: 67 PGN-IAAIR-----PMKDGVIADFFVTEKMLQHFIKQVHSNS---FMRPSPRVLVCVPVG 117 Query: 122 FTDSQRQATKDAGTIAGLDVKRIINEPTAAALAYGLEKKKEEKVLVFDLGGGTFDVSVLE 181 T +R+A +++ AG +I EP AAA+ GL + +V D+GGGT +V+V+ Sbjct: 118 ATQVERRAIRESAQGAGAREVFLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVIS 177 Query: 182 ISDGVIEVISTAGNNHLGGDDFDNEIINWLVAEFKKETGIDLSNDKMAYQRLKDAAEKAK 241 ++ V + + +GGD FD IIN++ + G + AE+ K Sbjct: 178 LNGVV-----YSSSVRIGGDRFDEAIINYVRRNYGSLIG-------------EATAERIK 219 Query: 242 KELSTLM----ETSISLPFITMDATGPKHLEMKLTRAKFNDLTKHLVEATQGPTKTALKD 297 E+ + I + + P+ + + L + L AL+ Sbjct: 220 HEIGSAYPGDEVREIEVRGRNLAEGVPRGFTLN-SNEILEALQEPLTGIVSA-VMVALEQ 277 Query: 298 AS--LEANQIDE-ILLVGGSTRIPAVQEWVENFFGKKPNKGINPDEVVAAGAAI 348 L ++ + ++L GG + + + G +P VA G Sbjct: 278 CPPELASDISERGMVLTGGGALLRNLDRLLMEETGIPVVVAEDPLTCVARGGGK 331
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 86.8 bits (215), Expect = 1e-21 Identities = 26/126 (20%), Positives = 57/126 (45%), Gaps = 3/126 (2%) Query: 3 KLMIADDEPLIRRGIKQLIDLSSLQIGEIYEASTGEEALKVFEEFKPEIVLMDINMPKID 62 +++ADD+ IR + Q + + ++ S + ++V+ D+ MP + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGY---DVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 63 GLSVAKKIKSINPDTKIAIITGYNYFDYAQTAIKIGVEDYILKPISKSDVSEIIVKLVSS 122 + +IK PD + +++ N F A A + G DY+ KP +++ II + ++ Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 123 LQKERK 128 ++ Sbjct: 122 PKRRPS 127
>PF06580#Sensor histidine kinase Length = 349 Score = 196 bits (500), Expect = 5e-60 Identities = 57/195 (29%), Positives = 99/195 (50%), Gaps = 7/195 (3%) Query: 355 LREYEINALYSQINPHFLYNTLDTIIWMAEFQDTEKVISITKALSNFFRISLSNGKEK-I 413 +E ++ AL +QINPHF++N L+ I + +D K + +LS R SL + + Sbjct: 158 AQEAQLMALKAQINPHFMFNALNNIRALIL-EDPTKAREMLTSLSELMRYSLRYSNARQV 216 Query: 414 PLKEEINHIKEYLYIQKQRYEDKLEYKISIQEELENIEVPKIILQPFVENAIYHGIKNLD 473 L +E+ + YL + ++ED+L+++ I + +++VP +++Q VEN I HGI L Sbjct: 217 SLADELTVVDSYLQLASIQFEDRLQFENQINPAIMDVQVPPMLVQTLVENGIKHGIAQLP 276 Query: 474 TTGIISIYSQIVENKIELIIEDNGIGFEAAKKQALMKMGGVGIKNVNKRIQYYYGKEYGA 533 G I + + L +E+ G K+ G G++NV +R+Q YG E Sbjct: 277 QGGKILLKGTKDNGTVTLEVENTGSLALKNTKE----STGTGLQNVRERLQMLYGTEAQI 332 Query: 534 KIDSSF-KTGARIII 547 K+ K A ++I Sbjct: 333 KLSEKQGKVNAMVLI 347
>PF05043#Transcriptional activator Length = 493 Score = 30.7 bits (69), Expect = 0.019 Identities = 76/497 (15%), Positives = 169/497 (34%), Gaps = 74/497 (14%) Query: 11 LPKIAELLTLTERSIRYKIDEIN---EELGTKKIEIKKREFFSSLTDEDMTKLVENVEGE 67 ++AELL TER+++ + + +L R + +D +M Sbjct: 28 RSELAELLNCTERAVKDDLSHVKSAFPDLIFHSSTNGIRIINTDDSDIEMV--------- 78 Query: 68 NYIYNQKERQELIILYTLMKKDNFLLKEVAEKLGTSKSTIRNDLKNLKKILLDYNIKLLQ 127 Y + K IL + + + + ++ S S++ + + K++ + Sbjct: 79 -YHHFFKHSTHFSILEFIFFNEGCQAESICKEFYISSSSLYRIISQINKVIKRQFQFEVS 137 Query: 128 DDKLKYYFDYLEDDYRYFIATYLYKYVSFDEKYDKIFFDDISYFRKVIYKEIKDEYITEI 187 ++ + E D RYF A Y F EKY F ++ Sbjct: 138 LTPVQIIGN--ERDIRYFFAQY------FSEKY-YFLEWPFENFSSEPLSQL-------- 180 Query: 188 NSVSKKMKKAELDYMDETLNILAILMVISQKREKKNSNLKIENIKILEKRKEYLQLKKIF 247 + K+ T +L +L+V + R K ++++ ++ ++L + Sbjct: 181 --LELVYKETSFPMNLSTHRMLKLLLVTNLYRIKFGHFMEVDKDSFNDQSLDFLMQAEGI 238 Query: 248 TDFSNT----------------------NLMFFTDYLFRITRDEKDIFVKFKNWLDIIVA 285 + + MFF D + +KD +V + ++ Sbjct: 239 EGVAQSFESEYNISLDEEVVCQLFVSYFQKMFFIDESLFMKCVKKDSYV--EKSYHLL-- 294 Query: 286 VNKIVRTFEIKIKVDLKNID---IFLDEIFYYIKPLIFRTKKRIKLKNSILKDVKKLYPS 342 + + +K +++++N D L + + +F K + +++ + ++P Sbjct: 295 -SDFIDQISVKYQIEIENKDNLIWHLHNTAHLYRQELFTEFILFDQKGNTIRNFQNIFPK 353 Query: 343 IFNFLKKNFYFLEEVINEKVSDEEIAYLVPFF-----HKALQNNNKINKKGILVTTYKEN 397 + +KK E + S + +L F H + K +LV + + Sbjct: 354 FVSDVKKELSHYLETLEVCSSSMMVNHLSYTFITHTKHLVINLLQNQPKLKVLVMSNFDQ 413 Query: 398 IALFLKENIEAEFLIDIDKILTLKSFEQIVKDLEN--YDYILTTFSVEKDFVKEIKRTKI 455 + + + ++ E + LE+ YD I++ F + I+ ++ Sbjct: 414 YHAKFVAETLSYYCSNNFELEVWTELELSKESLEDSPYDIIISNFIIPP-----IENKRL 468 Query: 456 IELNPILTEKDIKKLEE 472 I N I T I L Sbjct: 469 IYSNNINTVSLIYLLNA 485
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.4 bits (66), Expect = 0.004 Identities = 11/42 (26%), Positives = 17/42 (40%) Query: 67 TITSPMPGSILDVKVNVGDKVKFGQTLAILEAMKMENDIPAT 108 I + ++ V G+ V+ G L L A+ E D T Sbjct: 98 EIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKT 139
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 27.3 bits (60), Expect = 0.039 Identities = 30/154 (19%), Positives = 49/154 (31%), Gaps = 16/154 (10%) Query: 24 APDVTSGTT-MSAEEQKEAMDILDRMREKIEKEEAEKAKLIAEAKELGMSPSEVASMDNV 82 AP S TT AE K+ E K +A E EVA Sbjct: 1029 APATPSETTETVAENSKQ--------------ESKTVEKNEQDATETTAQNREVAKEAKS 1074 Query: 83 EEMLEAKRAAEAKPKTEAEKLELTRKKALNKLDFYERVVRSVAREENEVSDYYGVMGEEK 142 + A+ +E ++ + T K ++ E + + EV + ++ Sbjct: 1075 NVKANTQTNEVAQSGSETKETQTTETKETATVE-KEEKAKVETEKTQEVPKVTSQVSPKQ 1133 Query: 143 QRSTVYLGTAEAAAEQQVEQNAAPAEIQPETPEE 176 ++S AE A E N + Q T + Sbjct: 1134 EQSETVQPQAEPARENDPTVNIKEPQSQTNTTAD 1167
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.4 bits (68), Expect = 0.002 Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 5/68 (7%) Query: 24 EEYDKMQAEKAKEAERMAKENPQATEVVGENGEVVVTEGEEVAMAPKKSEKDMTESERMD 83 E E AKEA+ K N Q EV E +E K + + E+ Sbjct: 1059 TETTAQNREVAKEAKSNVKANTQTNEVAQSGSET-----KETQTTETKETATVEKEEKAK 1113 Query: 84 VEVQRIKK 91 VE ++ ++ Sbjct: 1114 VETEKTQE 1121
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 107 bits (268), Expect = 8e-31 Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 16/128 (12%) Query: 38 FDFDKSNVKPQYYDLLNNIKEFVEQ---NNYEITIVGHTDSIGSNAYNFKLSRRRAESVK 94 F+F+K+ +KP+ L+ + + + + ++G+TD IGS+AYN LS RRA+SV Sbjct: 223 FNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSVV 282 Query: 95 AKLLEFGLSEDRIVGIEAMGEEQPIATN---------ATKEGRAQNRRVEFKLVQRETVQ 145 L+ G+ D+I MGE P+ N A + A +RRVE ++ + ++ Sbjct: 283 DYLISKGIPADKI-SARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVE---IEVKGIK 338 Query: 146 GTTATPEA 153 P+A Sbjct: 339 DVVTQPQA 346
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 42.7 bits (100), Expect = 2e-06 Identities = 26/187 (13%), Positives = 61/187 (32%) Query: 22 SVKDMNKRLKNIDKEIEKKNTRIKAIDTETSKLEKMIKELEEEIKKLEHERKEIEDEITV 81 D+ K L+ + +IK ++ E + LE ELE+ ++ + +I Sbjct: 156 RKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKT 215 Query: 82 VKKNIDYSRKNLEISEVEHNRKESEFVAKIIAWDKYSKIHRKEIDEKVLLTKNYREMLHG 141 ++ E + A + L K ++ Sbjct: 216 LEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNF 275 Query: 142 DLQRMGHIEKVTGSIKEVKEKIEAEKRKLDRLEAELRENLRKSDIKKEEQKKLKEKLQVE 201 I+ + ++ + + + L A + R D +E +K+L+ + Q Sbjct: 276 STADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKL 335 Query: 202 KKGHQSS 208 ++ ++ S Sbjct: 336 EEQNKIS 342 Score = 40.0 bits (93), Expect = 1e-05 Identities = 31/232 (13%), Positives = 71/232 (30%), Gaps = 3/232 (1%) Query: 24 KDMNKRLKNIDKEIEKKNTRIKAIDTETSKLEKMIKELEEEIKKLEHERKEIEDEITVVK 83 K + + ++ ++ IK LE E LE + E+E + Sbjct: 144 KTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAM 203 Query: 84 KNIDYSRKNLEISEVEHNRKESEFVAKIIAWDKYSKIHRKEIDEKVLLTKNYREMLHGDL 143 ++ E E + A + + + L + Sbjct: 204 NFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQA 263 Query: 144 QRMGHIEKVTGSIKEVKEKIEAEKRKLDRLEAELRENLRKSDIKKEEQKKLKEKLQV--- 200 + +E KI+ + + LEAE + +S + ++ L+ L Sbjct: 264 ELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASRE 323 Query: 201 EKKGHQSSIEKLKKEKQRISKEIERIIRENARRAAEKAAREKAAKEAAKNKG 252 KK ++ +KL+++ + + + R+ K E ++ + Sbjct: 324 AKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNK 375 Score = 32.3 bits (73), Expect = 0.003 Identities = 29/220 (13%), Positives = 66/220 (30%), Gaps = 22/220 (10%) Query: 38 EKKNTRIKAIDTETSKLEKMIKELEEEIKKLEHERKEIEDEITVVKKNIDYSRKNLEISE 97 E ++ K+++ + E E L+ + ++ +K + D + L ++ Sbjct: 39 EVSAVATRSQTDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAK 98 Query: 98 VEHNRKESEFVAKIIAWDKYSKIHRKEIDEKVLLTKNYREMLHGDLQRMGHIEKVTGSIK 157 + + K + EK + + + + + Sbjct: 99 EKLR------------------KNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADS 140 Query: 158 EVKEKIEAEKRKL----DRLEAELRENLRKSDIKKEEQKKLKEKLQVEKKGHQSSIEKLK 213 + +EAEK L LE L + S + K L+ + + + L+ Sbjct: 141 AKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALE 200 Query: 214 KEKQRISKEIERIIRENARRAAEKAAREKAAKEAAKNKGK 253 + + +I A +AA A + K Sbjct: 201 GAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNF 240 Score = 30.0 bits (67), Expect = 0.019 Identities = 55/282 (19%), Positives = 104/282 (36%), Gaps = 24/282 (8%) Query: 11 LLSASIYPASKSVKDMNKRLKNIDKEIEKKNTRIKAIDTETSKLEKMIKELEEEIKKLEH 70 SA I + R +++K +E A + LE LE +LE Sbjct: 208 ADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEK 267 Query: 71 ERKEIEDEITVVKKNIDYSRKNLEISEVEHNRKESEFVAKIIAWDKYSKIHRKEIDEKVL 130 + + T I E E E + + +R+ + + Sbjct: 268 ALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQ--------SQVLNANRQSLRRDLD 319 Query: 131 LTKNYREMLHGDLQRMGHIEKVT-GSIKEVKEKIEAEKRKLDRLEAEL------------ 177 ++ ++ L + Q++ K++ S + ++ ++A + +LEAE Sbjct: 320 ASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEA 379 Query: 178 -RENLRKSDIKKEEQKKLKEKLQVEKKGHQSSIEKLKKEKQRISKEIERIIRE-NARRAA 235 R++LR+ E KK EK E +++EKL KE + K E+ E A+ A Sbjct: 380 SRQSLRRDLDASREAKKQVEKALEEANSKLAALEKLNKELEESKKLTEKEKAELQAKLEA 439 Query: 236 E-KAAREKAAKEAAKNKGKGSKRSGGTKVTTTTVDMPKISNP 276 E KA +EK AK+A + + ++ ++ + Sbjct: 440 EAKALKEKLAKQAEELAKLRAGKASDSQTPDAKPGNKAVPGK 481 Score = 29.3 bits (65), Expect = 0.029 Identities = 45/245 (18%), Positives = 88/245 (35%), Gaps = 7/245 (2%) Query: 19 ASKSVKDMNKRLKNIDKEIEKKNTRIKAIDTETSKLEKMIKELEEEIKKLEHERKEIEDE 78 + R ++K +E A + LE LE E LEH+ + + Sbjct: 251 LEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNAN 310 Query: 79 ITVVKKNIDYSRKNLEISEVEHNRKESEFVAKIIAWDKYSKIHRKEIDEK----VLLTKN 134 +++++D SR+ + E EH + E + + + + K K Sbjct: 311 RQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKL 370 Query: 135 YREMLHGDLQRMGHIEKVTGSI---KEVKEKIEAEKRKLDRLEAELRENLRKSDIKKEEQ 191 + + R + S K+V++ +E KL LE +E + ++E+ Sbjct: 371 EEQNKISEASRQSLRRDLDASREAKKQVEKALEEANSKLAALEKLNKELEESKKLTEKEK 430 Query: 192 KKLKEKLQVEKKGHQSSIEKLKKEKQRISKEIERIIRENARRAAEKAAREKAAKEAAKNK 251 +L+ KL+ E K + + K +E ++ + + KA K A K Sbjct: 431 AELQAKLEAEAKALKEKLAKQAEELAKLRAGKASDSQTPDAKPGNKAVPGKGQAPQAGTK 490 Query: 252 GKGSK 256 +K Sbjct: 491 PNQNK 495
>PF01540#Adhesin lipoprotein Length = 475 Score = 35.9 bits (82), Expect = 4e-04 Identities = 60/286 (20%), Positives = 117/286 (40%), Gaps = 48/286 (16%) Query: 156 KDEKDIKENLASLLYQYREIDSKIEDIEREKRETLEKKEFYEYQLEEIEKLKLKDGEDEL 215 + IKE LL ++ KI+ T+ K E ++Q++E K +L + L Sbjct: 118 DENLKIKEGAKELL----KLSEKIQSFADTIALTITKLEGKKFQIDETFKKQLISTIELL 173 Query: 216 LE--VEYKRVFNAEKIREK-VYESLEYLKNDDDSALSLITNSIRNI---------EYLGK 263 + E K I++ + LE K + S L I + + E + Sbjct: 174 NKKSAEVKTFATVNTIKKDFLLSELESFKEFNTSWLEKIVSEWEEVKKAWSKELAEIKAE 233 Query: 264 YDERYTELAKRIENAYYELEDCANEIEDISKGIDVTENDLDKIASRMNTLKRIKEKYKRT 323 D++ E ++I+ EL + +I+ + I +T L++ +I EK+K+ Sbjct: 234 DDKKLAEENQKIKEGAKELLKLSEKIQSFADTIALTITKLERKF-------QIDEKFKKQ 286 Query: 324 LPELIEYREDLKEKLSDIDS--------GDFKTKELKK-------ELNKIKDEYDKIAEK 368 L IE L +K ++ + DF EL+ L KI E++++ + Sbjct: 287 LISTIE---LLNKKSVEVKTFATVNTIKKDFLLSELESFKEFNTSWLEKIVSEWEEVKKA 343 Query: 369 LTNSRKEIAVKIENELLNELKFLNMEDAKLKVQINKLERMTNEGYD 414 + EI + + +L E+ K+K + +L+++ NE ++ Sbjct: 344 WSKELAEIKAEDDKKLAE-------ENQKIKNGVEELKKINNEAFE 382
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 45.4 bits (107), Expect = 9e-07 Identities = 39/294 (13%), Positives = 94/294 (31%), Gaps = 6/294 (2%) Query: 224 NINVVSKNLENEIKDYETTEIELNNLVKNIKDEENKIKKYLNILKENIIEAKQAKKSKII 283 + V + + + T +++ ++L N K ++ + L + ++ KS Sbjct: 51 TLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSE 110 Query: 284 VKETEKSYLEYLEIENRLKDLRENLDNLLEEQKLNIQYQNNIEKLELSNKNLKNDIINLE 343 + + + N + ++ + L +L+ + Sbjct: 111 KASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEK--AALAARKADLEKALEGAM 168 Query: 344 ENISKNSEKKENLESEISNLKIKEEDLDLKLKKYISLLDELEKLENFKDKKLEDKLKKTT 403 + +S K + LE+E + L+ ++ +L+ L+ ++ K K LE + Sbjct: 169 NFSTADSAKIKTLEAEKAALEARQAELEKALEG----AMNFSTADSAKIKTLEAEKAALA 224 Query: 404 EIDILKKELISKKDLFKTINIEIIEEKLSNFQELEKELKLLEEQKIIFEIEIKTLKKSSK 463 ++ + F T + I+ + LE LE+ K Sbjct: 225 ARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIK 284 Query: 464 ELSDKICPFLNEKCQNLEDKEAEDYFSSKISIKKEDLENLKKNIKEKTQILVEK 517 L + EK + + + + KK ++ + Q L E+ Sbjct: 285 TLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQ 338 Score = 41.2 bits (96), Expect = 2e-05 Identities = 52/306 (16%), Positives = 97/306 (31%), Gaps = 27/306 (8%) Query: 343 EENISKNSEKKENLESEISNLKIKEEDLDLKLKKYISLLDELEKLENFKDKKLEDKLKKT 402 + + K E+ + E E + LK+K DL K DEL + + +KL K Sbjct: 49 TDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKS- 107 Query: 403 TEIDILKKELISKKDLFKTINIEIIEEKLSNFQELEKELKLLEEQKIIFEIEIKTLKKSS 462 + EK S QELE LE+ Sbjct: 108 ------------------------LSEKASKIQELEARKADLEKALEGAMNFSTADSAKI 143 Query: 463 KELSDKICPFLNEKCQNLEDKEAEDYFSSKISIKKEDLENLKKNIKEKTQILVEKVVFED 522 K L + K + E FS+ S K + LE K ++ + L + E Sbjct: 144 KTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKA--LEG 201 Query: 523 KKKQYFELEKSIKDLEISLKNEEINLKEIELDIKNLDIDIQKLIENQEFQNSQMLREKKT 582 IK LE ++E ++ + ++ + Sbjct: 202 AMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEAR 261 Query: 583 ELEVELRNLNLDEKRENLKNILENLEIEKEKILKNQNSIKSNLEEIDVFSKKIKEDINKN 642 + E+E ++ LE EK + + ++ + ++ + ++ D++ + Sbjct: 262 QAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDAS 321 Query: 643 IESIKS 648 E+ K Sbjct: 322 REAKKQ 327
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 48.3 bits (115), Expect = 3e-08 Identities = 22/101 (21%), Positives = 44/101 (43%), Gaps = 5/101 (4%) Query: 208 LEDDGLLKDEHYWLFKLIKEARFFRF--SQARYLFVGRNKESNDKIDEFRKEKNLDFYIQ 265 L + G +K + + K K ++ F ++VG+N ND + + D + Sbjct: 437 LIETGYIKFKKIYKSKKSKTSKPMHFISKDGIDIYVGKNNIQNDYL-TLKFANKHDIWFH 495 Query: 266 SSEVPGPHII--ANTNLTDEEIEFAKKLFSRYSKVKGNEKV 304 + +PG H+I ++ + + A L + YSK + + V Sbjct: 496 TKNIPGSHVIVKNIMDIPESTLLEAANLAAYYSKSQNSSNV 536
>NAFLGMOTY#Sodium-type flagellar protein MotY precursor signature. Length = 293 Score = 28.6 bits (63), Expect = 0.033 Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 12/109 (11%) Query: 27 QMFYNRELKTEISIDKINLLVKFNAFNGKEIKEVEYLYEDKNNHGTIKYFDKEGKLKLKA 86 Q + +R+ + E+++ + K+NAF+ ++Y +ED TI +++++G KA Sbjct: 140 QDWQSRDQRIEVALSSVLFQSKYNAFSDCIANLLKYSFEDIAF--TILHYERQGDQLTKA 197 Query: 87 AISTNNLLNGNSRLDSIEAYYENGNKIDMNLL-RYPVEIDGLWKNNKLT 134 + RL I Y + ID+ L+ Y DG ++ L+ Sbjct: 198 S---------KKRLAQIADYVRHNQDIDLVLVATYTDSTDGKSESQSLS 237
>ADHESNFAMILY#Adhesin family signature. Length = 309 Score = 264 bits (676), Expect = 1e-89 Identities = 94/315 (29%), Positives = 171/315 (54%), Gaps = 16/315 (5%) Query: 5 MKKIFKLLTVMMISLFIVACGEKKEEVGTSNEIQKIKVTTTLNYYQNLIEEIGGDKVEVI 64 MKK+ LL + + ++ +VAC K++ + QK+KV T + ++ + I GDK+++ Sbjct: 1 MKKLGTLLVLFLSAIILVACASGKKDTTSG---QKLKVVATNSIIADITKNIAGDKIDLH 57 Query: 65 GLMKEGEDPHLYVATAGDVEKLQNADLVVYGGLHLEGKMTDIFANLS-------NKYILN 117 ++ G+DPH Y DV+K ADL+ Y G++LE F L NK Sbjct: 58 SIVPIGQDPHEYEPLPEDVKKTSEADLIFYNGINLETGGNAWFTKLVENAKKTENKDYFA 117 Query: 118 LGDQLDKSLLHKEDE-NTYDPHVWFNTKFWAIQAKSVADKLSEILPENKDYFENNLQVYL 176 + D +D L ++E DPH W N + I AK++A +LS P NK+++E NL+ Y Sbjct: 118 VSDGVDVIYLEGQNEKGKEDPHAWLNLENGIIFAKNIAKQLSAKDPNNKEFYEKNLKEYT 177 Query: 177 KSLDEATEYIQAKINEIPEESRYLITAHDAFAYFAEQFGLQVKAIQGVSTDSEIGTKQIE 236 LD+ + + K N+IP E + ++T+ AF YF++ +G+ I ++T+ E +QI+ Sbjct: 178 DKLDKLDKESKDKFNKIPAEKKLIVTSEGAFKYFSKAYGVPSAYIWEINTEEEGTPEQIK 237 Query: 237 DLANFIVEHNIKAIFVESSVNHKSIEALQEAVKAKGGNVEIGGELYSDSMGDKENNTETY 296 L + + + ++FVESSV+ + ++ + ++ N+ I ++++DS+ ++ ++Y Sbjct: 238 TLVEKLRQTKVPSLFVESSVDDRPMKTV-----SQDTNIPIYAQIFTDSIAEQGKEGDSY 292 Query: 297 IKTIKANADTISNAL 311 +K N D I+ L Sbjct: 293 YSMMKYNLDKIAEGL 307
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 28.4 bits (63), Expect = 0.049 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 11/57 (19%) Query: 229 SVVTLLSAIIGGISGA-MGSIISTFDVALPTGPLIILVSGIFALISFL--FSKKGII 282 ++ T+L+++ GIS A S++ P+ LV + +IS + SK+ + Sbjct: 370 TISTVLASVSSGISAAATTSLVGA--------PVSALVGAVTGIISGILEASKQAMF 418
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 29.3 bits (65), Expect = 0.024 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 13/47 (27%) Query: 183 SGIIHGDIFPDNVLLDEYNNIKVIFD-------------FNESYYAP 216 +G++H DI P NV+ D + V+ D F ES+ AP Sbjct: 264 AGVVHNDIKPGNVVFDRASGEPVVIDLGLHSRSGEQPKGFTESFKAP 310
>LCRVANTIGEN#Low calcium response V antigen signature. Length = 326 Score = 28.9 bits (64), Expect = 0.013 Identities = 30/137 (21%), Positives = 58/137 (42%), Gaps = 23/137 (16%) Query: 75 IAFYKVYGDYKDRD-----KVVISTQDIKRIKMLAFYNEFWEKLR------AEFNKRPTI 123 + + + D D D ++ R K+ E +L+ AE NK + Sbjct: 121 VMHFSLTADRIDDDILKVIVDSMNHHGDARSKLREELAELTAELKIYSVIQAEINKHLSS 180 Query: 124 LFTVNLEDKVFLDVLDFIIAKTDRLQPIYLYTGDEIDKLLTDKDIISFINKYSIEIIKGE 183 T+N+ DK ++++D + +Y YT +EI K + I+ + + +I++ E Sbjct: 181 SGTINIHDKS-INLMD---------KNLYGYTDEEIFKASAEYKILEKMPQTTIQVDGSE 230 Query: 184 NKEFIANVKEKFFGEKK 200 K I ++K+ E K Sbjct: 231 KK--IVSIKDFLGSENK 245
>PHPHLIPASEA1#Bacterial phospholipase A1 protein signature. Length = 289 Score = 28.8 bits (64), Expect = 0.019 Identities = 8/25 (32%), Positives = 12/25 (48%) Query: 203 RYPYDVDNPIITEYLGIFNRIVGSA 227 DNP IT+Y+G + +G Sbjct: 198 VVGNTDDNPDITKYMGYYQLKIGYH 222
>cloacin#Cloacin signature. Length = 551 Score = 28.9 bits (64), Expect = 0.036 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 2/49 (4%) Query: 300 SVVVKPTSSISLEQKTVNIKEMKEDILKINGRHDTCI--VPRVLPVIEA 346 + P SS+ L++ TVN+ D +K ++ + + VP +PV++A Sbjct: 163 DITESPVSSLPLDKATVNVNVRVVDDVKDERQNISVVSGVPMSVPVVDA 211
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 28.6 bits (63), Expect = 0.036 Identities = 36/122 (29%), Positives = 53/122 (43%), Gaps = 25/122 (20%) Query: 182 EEEFDKNLENRY--EFYKNESQNNIKAFINIGGNLLSLGENADIINN-------QKILLD 232 EEE K E + E K E+ N A+IN + + N IIN QKI+LD Sbjct: 324 EEELKKREEAKRQRELIKQENLNT-TAYIN----RVMMASNEQIINKEKIREEKQKIILD 378 Query: 233 ESSPLKTGLVGKFLKDDIPVFYLLNIKSIALYYNLEHDPDKFSK-IGTSSIYYDSSKNFW 291 ++ L+T V LK + + YN P+K SK I S I+ D + ++ Sbjct: 379 QAKALETQYVHNALKRN----------PVPRNYNYYQAPEKRSKHIMPSEIFDDGTFTYF 428 Query: 292 NY 293 + Sbjct: 429 GF 430
>TETREPRESSOR#Tetracycline repressor protein signature. Length = 218 Score = 50.3 bits (120), Expect = 6e-10 Identities = 21/55 (38%), Positives = 32/55 (58%) Query: 18 KEELIKKGIELINEVGENKLSLRKLAIICGVSNSAPYTHFKSKDELLKGMSLYIL 72 +E +I +EL+NE G + L+ RKLA G+ Y H K+K LL +++ IL Sbjct: 6 RESVIDAALELLNETGIDGLTTRKLAQKLGIEQPTLYWHVKNKRALLDALAVEIL 60
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 104 bits (262), Expect = 8e-32 Identities = 42/138 (30%), Positives = 73/138 (52%), Gaps = 1/138 (0%) Query: 4 KENLNKYLSNLGILITKTHNLHWNVVGARFKAIHEYTESLYDYYFEKFDEVAEAFKMKGE 63 + +LN LSN +L +K H HW V G F +HE E LYD+ E D +AE G Sbjct: 14 ENSLNTQLSNWFLLYSKLHRFHWYVKGPHFFTLHEKFEELYDHAAETVDTIAERLLAIGG 73 Query: 64 FPLVKVADYLKHATVKELEAKDFTIPEVVTSIKEDIELMLADARKIREVANEEDDFLVAN 123 P+ V +Y +HA++ + + + E+V ++ D + + ++++ + +A E D A+ Sbjct: 74 QPVATVKEYTEHASITD-GGNETSASEMVQALVNDYKQISSESKFVIGLAEENQDNATAD 132 Query: 124 MMEDQIEYFVKQLWFISA 141 + IE KQ+W +S+ Sbjct: 133 LFVGLIEEVEKQVWMLSS 150
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 46.4 bits (110), Expect = 6e-08 Identities = 49/304 (16%), Positives = 116/304 (38%), Gaps = 21/304 (6%) Query: 5 ESNIKLLLLGRVVSLFGNTIYLI--VLPLYILNIT---QNLKTTGIFFASINLPTIIISP 59 + N L+++ V+L I LI VLP + ++ GI A L +P Sbjct: 2 KPNRPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAP 61 Query: 60 LIGTLIEKFNKKNIILICDFLTSMLYFIPFLYFKNSNSVIFLLIVSLILNIISKFFEIAS 119 ++G L ++F ++ ++L+ ++ Y I + +++L + I+ I+ + Sbjct: 62 VLGALSDRFGRRPVLLVSLAGAAVDYAI-----MATAPFLWVLYIGRIVAGITGATGAVA 116 Query: 120 KVLFSEINTPETLEKYNGLQSFLENAVMIFGPVVGTYLFATFTFNFVLIIISLAYFLSFL 179 ++I + ++ G S M+ GPV+G + F+ + + L+FL Sbjct: 117 GAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLM-GGFSPHAPFFAAAALNGLNFL 175 Query: 180 QELFIKYEKNTNLSKEKSSFFKDFKEGISYIKSKKIIFNFFILAMFLNFFIANNDEIINP 239 F+ E + + + + + ++ + F+ + + Sbjct: 176 TGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVF-FIMQLVGQVPAALWV 234 Query: 240 GILIKKYQISEKLFGFSVACYGL-----GSVVAGYLSSYIGAD----VTYIIDNVAIIII 290 ++ G S+A +G+ +++ G +++ +G + I D I++ Sbjct: 235 IFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILL 294 Query: 291 VFLV 294 F Sbjct: 295 AFAT 298 Score = 30.2 bits (68), Expect = 0.011 Identities = 23/122 (18%), Positives = 49/122 (40%), Gaps = 6/122 (4%) Query: 39 NLKTTGIFFASINLPTIIISPLI-GTLIEKFNKKNIILICDFLTSMLYFIPFLYFKNSNS 97 + T GI A+ + + +I G + + ++ +++ + +I L F Sbjct: 244 DATTIGISLAAFGILHSLAQAMITGPVAARLGERRALML-GMIADGTGYI-LLAFATRGW 301 Query: 98 VIFLLIVSLILNIISKFFEIASKVLFSEINTPETLEKYNGLQSFLENAVMIFGPVVGTYL 157 + F ++V L I A + + S E + G + L + I GP++ T + Sbjct: 302 MAFPIMVLLASGGI---GMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAI 358 Query: 158 FA 159 +A Sbjct: 359 YA 360
>ACETATEKNASE#Acetate kinase family signature. Length = 400 Score = 518 bits (1336), Expect = 0.0 Identities = 220/400 (55%), Positives = 282/400 (70%), Gaps = 5/400 (1%) Query: 1 MKILVINCGSSSLKYQLINPETEEVFAKGLCERIGIDGSKLEYEVVAKDFEKKLETPMPS 60 MKILVINCGSSSLKYQLI + V AKGL ERIGI+ S L + + + K++ M Sbjct: 1 MKILVINCGSSSLKYQLIESKDGNVLAKGLAERIGINDSLLTHNANGE--KIKIKKDMKD 58 Query: 61 HKEALELVISHLTDKEIGVIASVDEVDAIGHRVVHGGEEFAQSVLINDAVLKAIEANNDL 120 HK+A++LV+ L + + GVI + E+DA+GHRVVHGGE F SVLI D VLKAI +L Sbjct: 59 HKDAIKLVLDALVNSDYGVIKDMSEIDAVGHRVVHGGEYFTSSVLITDDVLKAITDCIEL 118 Query: 121 APLHNPANLMGIRTCMELMPGKKNVAVFDTAFHQTMKPEAFMYPLPYEDYKELKVRKYGF 180 APLHNPAN+ GI+ C ++MP VAVFDTAFHQTM A++YP+PYE Y + K+RKYGF Sbjct: 119 APLHNPANIEGIKACTQIMPDVPMVAVFDTAFHQTMPDYAYLYPIPYEYYTKYKIRKYGF 178 Query: 181 HGTSHLYVSGIMREIMGNP-EHSKIIVCHLGNGASITAVKDGKSVDTSMGLTPLQGLMMG 239 HGTSH YVS EI+ P E KII CHLGNG+SI AVK+GKS+DTSMG TPL+GL MG Sbjct: 179 HGTSHKYVSQRAAEILNKPIESLKIITCHLGNGSSIAAVKNGKSIDTSMGFTPLEGLAMG 238 Query: 240 TRCGDIDPAAVLFVKNKRGLTDAQMDDRMNKKSGILGLFGKSSDCRDL-ENAVVEGDERA 298 TR G IDP+ + ++ K ++ ++ + +NKKSG+ G+ G SSD RDL + A GD+RA Sbjct: 239 TRSGSIDPSIISYLMEKENISAEEVVNILNKKSGVYGISGISSDFRDLEDAAFKNGDKRA 298 Query: 299 ILAESVSMHRLRSYIGAYAAIMGGVDAICFTGGIGENSSMTREKALEGLEFLGVELDKEI 358 LA +V +R++ IG+YAA MGGVD I FT GIGEN RE L+GLEFLG +LDKE Sbjct: 299 QLALNVFAYRVKKTIGSYAAAMGGVDVIVFTAGIGENGPEIREFILDGLEFLGFKLDKEK 358 Query: 359 NSVRKKGNVKLSKDSSKVLIYKIPTNEELVIARDTFRLAK 398 N VR + + +S SKV + +PTNEE +IA+DT ++ + Sbjct: 359 NKVRGEEAI-ISTADSKVNVMVVPTNEEYMIAKDTEKIVE 397
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 30.5 bits (68), Expect = 0.030 Identities = 35/161 (21%), Positives = 70/161 (43%), Gaps = 10/161 (6%) Query: 635 SQDYSELFKNYSKQINEGDKIKLIEENLSFENLKESNFVDEFEKAYEKYQRILNSDENSQ 694 ++DY E K ++ D +L E+ + E KE+ E + +K +R +E ++ Sbjct: 119 TRDYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAK---EQAQKAQKDKREKRKEERAK 175 Query: 695 DALKLRDIQSVTVIPYDIYEENEENIKELIKKIEDKNLGLEER-----QNAKTELLKKTL 749 + L ++ + P ++ N +N+ ELIK+ + L ER + A+ LK+ Sbjct: 176 NRANLENLTNAMSNPQNL--SNNKNLSELIKQQRENELDQMERLEDMQEQAQANALKQIE 233 Query: 750 SIQYYQLSKYISEILKGKADANKYKSESINKFEKITVMEAD 790 + Q + + + K K KS+ + I + +D Sbjct: 234 ELNKKQAEEAVRQRAKDKISIKTDKSQKSPEDNSIELSPSD 274
>cloacin#Cloacin signature. Length = 551 Score = 30.5 bits (68), Expect = 0.006 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 11/64 (17%) Query: 19 NSEYKKKLEEFKALKKEIAD-----------KKKKEDKKLETFKQLSEEEKKVKLEEEKY 67 ++ K F A KE +D +KKKEDKK L++E+ K + + Y Sbjct: 401 QTDVNNKQAAFDAAAKEKSDADAALSSAMESRKKKEDKKRSAENNLNDEKNKPRKGFKDY 460 Query: 68 KEDF 71 D+ Sbjct: 461 GHDY 464
>PF05704#Capsular polysaccharide synthesis protein Length = 307 Score = 43.7 bits (103), Expect = 3e-07 Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 2/97 (2%) Query: 1 MIEKKIHYVWFG--NAKSEKVLKCIESWKKNLPDYEIIEWNEKNFNIEEELKSNKFFREC 58 M +K I W V +C+ S KKN D+++I + N+ ++ R Sbjct: 66 MRQKYIFICWLQGIEKAPYIVQQCVASVKKNSGDFKVIIIDGNNYKEWVDIPDFLIKRWQ 125 Query: 59 YNRKLWAFVSDYVRVKVLYNYGGIYLDTDMEIIKDIT 95 + L A+ SD +R+ +L YGG+++D + + + Sbjct: 126 EGKMLDAWFSDILRLFLLCKYGGLWIDATVYMFDKVP 162
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 61.9 bits (150), Expect = 1e-13 Identities = 37/184 (20%), Positives = 74/184 (40%), Gaps = 19/184 (10%) Query: 46 PPKPKVEKKPEEKKPEEKKVEKKPE-KKEIESNIPSKDAKPVEKQPETTTSENTQS-TES 103 P V+ PE E + E PE KE I KP K E + + Sbjct: 61 EPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKP 120 Query: 104 ADKVESTPSDNNSSSGGGNTSSTGSGDEGFGSNFISDGDGSYIALSSKGINYQIINEVEP 163 + ++P +N + + ++++T + + S + ++ +P Sbjct: 121 VESRPASPFENTAPARPTSSTATAATSKPVTS---VASG------------PRALSRNQP 165 Query: 164 DYPSQAESIGYSKQVKVTVKFLVGLKGNVEKAEITQSHKDLGFDAEVMKAIKKWKFKPIY 223 YP++A+++ + +V VKF V G V+ +I + F+ EV A+++W+++P Sbjct: 166 QYPARAQALR--IEGQVKVKFDVTPDGRVDNVQILSAKPANMFEREVKNAMRRWRYEPGK 223 Query: 224 HNGK 227 Sbjct: 224 PGSG 227
>BINARYTOXINB#Binary toxin B family signature. Length = 764 Score = 27.7 bits (61), Expect = 0.046 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 3/58 (5%) Query: 58 LKPTMGTILFEGKPLSEIPRKDIQAIFQDPYSALNPSLKIGEILEEPLIA---NGIFQ 112 ++ T I+F GK L+ + R+ DP P + + E L+ NG Q Sbjct: 513 IQETTARIIFNGKDLNLVERRIAAVNPSDPLETTKPDMTLKEALKIAFGFNEPNGNLQ 570
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 53.7 bits (129), Expect = 2e-10 Identities = 9/49 (18%), Positives = 23/49 (46%) Query: 219 KVTMNDVEKDRLIEGLKRNGFSLSNTAKDLGMSRTTLWRKLKKFNIIIE 267 + ++E ++ L + A LG++R TL +K+++ + + Sbjct: 430 DRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGVSVY 478
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 32.6 bits (74), Expect = 2e-04 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 5/80 (6%) Query: 11 MYLLDDNGIKGECVVTDEGEGILEIKNIAIEPDCQRKGYGKALIDFIAK--KYRGQYSI- 67 +Y L++N I G + G I++IA+ D ++KG G AL+ + K + Sbjct: 69 LYYLENNCI-GRIKIRSNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLM 127 Query: 68 LQVGTGDSPMIISFYEKCGF 87 L+ + FY K F Sbjct: 128 LETQDINISA-CHFYAKHHF 146
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 39.5 bits (92), Expect = 3e-07 Identities = 15/64 (23%), Positives = 34/64 (53%), Gaps = 1/64 (1%) Query: 4 IHSEGKGFYIYDENKEILARLEYKKNDN-VLTFDHTVVSDKLKGQGIAQKLLDEAVDYAR 62 + EGK ++Y + R++ + N N + V+ + +G+ LL +A+++A+ Sbjct: 60 VEEEGKAAFLYYLENNCIGRIKIRSNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAK 119 Query: 63 KNNF 66 +N+F Sbjct: 120 ENHF 123
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 29.8 bits (67), Expect = 0.027 Identities = 22/98 (22%), Positives = 41/98 (41%), Gaps = 6/98 (6%) Query: 288 RLVSRILGMGDVVSLVEKAQEVIDENEAKSLEEKIKSQKFDLNDFLKQLQTIKRLGSLGG 347 RL S +L + D V + EK + I E E K K + + +L S+ G Sbjct: 269 RLYSGVLHLRDSVRISEKEKIKITEMYTSINGELCKIDKAYSGEIVILQNEFLKLNSVLG 328 Query: 348 ILKLIPGMPKIDDLAPAEKEMKKVEAIIQSMTKEERKK 385 KL+P +I++ P ++ ++ ++R+ Sbjct: 329 DTKLLPQRERIENPLPL------LQTTVEPSKPQQREM 360
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 31.7 bits (72), Expect = 0.016 Identities = 11/33 (33%), Positives = 22/33 (66%), Gaps = 3/33 (9%) Query: 269 SNKSILITGESGIGKTILKKEILN---RNSGKF 298 ++ +++ITGESG GK ++ + + + R +G F Sbjct: 159 TDLTLMITGESGTGKELVARALHDYGKRRNGPF 191
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 43.1 bits (101), Expect = 5e-06 Identities = 55/263 (20%), Positives = 90/263 (34%), Gaps = 21/263 (7%) Query: 593 NPVEYIGKNAEASTKNVAENVE--NVFQDLDKKVMSGTATKEELAMGAIVQNMTTMGFTS 650 N V +N +T N E N ++ ++ + E A + + +T+ Sbjct: 1193 NSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTS-SNDRSTVALCD 1251 Query: 651 ATEMMSGEIYASAQALTFSQAQNINRDLSNRLAGLDNFKNSNKDSEVWFSAIGSGGKLKR 710 T + + + A+A A N+ + +S ++ L N+ VW S Sbjct: 1252 LTSTNTNAVLSDARAKAQFVALNVGKAVSQHISQL--EMNNEGQYNVWVSNTSMNKNYSS 1309 Query: 711 DGYASADTRVTGGQFGIDTKYKGTTTLGVAMNYSYAKANFNRYAGESKSDMVGVSFYAKQ 770 Y ++ T Q G D LG Y NF++ SK+ + V+FY+K Sbjct: 1310 SQYRRFSSKSTQTQLGWDQTISNNVQLGGVFTYVRNSNNFDKAT--SKNTLAQVNFYSKY 1367 Query: 771 DLPYGFYTAGRLGLSNISSKVERELLTSTGETVTGKIKHHDKMLSAYVEIGKKF--GWF- 827 +Y LG SK++ K + GK F G F Sbjct: 1368 YADNHWYLGIDLGYGKFQSKLQTN----------HNAKFARHTAQFGLTAGKAFNLGNFG 1417 Query: 828 -TPFIGYSQDYLRRGSFNESEAS 849 TP +G YL F +A Sbjct: 1418 ITPIVGVRYSYLSNADFALDQAR 1440
>CHLAMIDIAOMP#Chlamydia major outer membrane protein signature. Length = 393 Score = 26.1 bits (57), Expect = 0.040 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 7/54 (12%) Query: 73 KPATEKYEVYFNAGEGHVVSKKG------P-ALTAGEKANWDKATASFDFGEWK 119 KP E+ V NA E + KG P AL AG A AS D+ EW+ Sbjct: 219 KPKVEELNVLCNAAEFTINKPKGYVGQEFPLALIAGTDAATGTKDASIDYHEWQ 272
>adhesinb#Adhesin B signature. Length = 310 Score = 55.6 bits (134), Expect = 4e-11 Identities = 51/274 (18%), Positives = 97/274 (35%), Gaps = 30/274 (10%) Query: 22 YSLTSYLTKGTDIKVYTPFGSDISMTMSKESIREEGFNLAVAKKA--QAVVDIAKIWPED 79 +L S + G D Y P D+ T + I G NL A +V+ AK Sbjct: 55 INLHSIVPVGQDPHEYEPLPEDVKKTSQADLIFYNGINLETGGNAWFTKLVENAKKKENK 114 Query: 80 VIYGKARMNKINIVEIDASHPYDEKMTTLFFSDYSNGKVNPYIWTGSKNLVRMVNIIGRD 139 Y A ++++ + GK +P+ W +N + I + Sbjct: 115 DYY--AVSEGVDVIYL-EGQSE-------------KGKEDPHAWLNLENGIIYAQNIAKR 158 Query: 140 LIRLYPQNKAKIEKNITKFTADLLKIENEANEKLLAVGDA--EVISLSENLQYFLNDMNI 197 L P NK EKN+ + L ++ EA EK + +++ +YF N+ Sbjct: 159 LSEKDPANKETYEKNLKAYVEKLSALDKEAKEKFNNIPGEKKMIVTSEGCFKYFSKAYNV 218 Query: 198 YTEYV-------DYDSVNAQNIAKLIKDKGIKVIVSDRWLKKDAIKAL-KEAGGEFVVIN 249 + Y+ + + + + ++ + + + + +K + K+ Sbjct: 219 PSAYIWEINTEEEGTPDQIKTLVEKLRKTKVPSLFVESSVDDRPMKTVSKDTNIPIYAKI 278 Query: 250 TLDIPMDKDGKMDPEAILKAFKENTDNLIEALSK 283 D +K + D + K N + + E LSK Sbjct: 279 FTDSVAEKGEEGD--SYYSMMKYNLEKIAEGLSK 310
>ADHESNFAMILY#Adhesin family signature. Length = 309 Score = 142 bits (359), Expect = 2e-42 Identities = 65/287 (22%), Positives = 138/287 (48%), Gaps = 11/287 (3%) Query: 14 SFSAFAKEKLKIGVTLQPYYSFAANIVKDKAEVVPVVRLDQYDSHSYQPKPEDIKRMNTL 73 + +KLK+ T NI DK ++ +V D H Y+P PED+K+ + Sbjct: 24 KKDTTSGQKLKVVATNSIIADITKNIAGDKIDLHSIVP-IGQDPHEYEPLPEDVKKTSEA 82 Query: 74 DVLIVNGV----GHDEFIFDILNAADRKKDIKVIYANKNVSLMPIAGSIRAEKVMNPHTF 129 D++ NG+ G + + ++ A + ++ + V ++ + G K +PH + Sbjct: 83 DLIFYNGINLETGGNAWFTKLVENAKKTENKDYFAVSDGVDVIYLEGQNEKGK-EDPHAW 141 Query: 130 ISITTSIQQVYNIAKELGEIDPANKEFYLKNARDYAKKLRKLKTDALNEVKHLGNIDIRV 189 +++ I NIAK+L DP NKEFY KN ++Y KL KL ++ ++ + + Sbjct: 142 LNLENGIIFAKNIAKQLSAKDPNNKEFYEKNLKEYTDKLDKLDKESKDKFNKIPAEKKLI 201 Query: 190 ATLHGGYDYLLSEFGIDVKAVIEPSHGAQPSAADLEKVIKIIKNEKIDIIFGEKNFNNKF 249 T G + Y +G+ + E + + + ++ +++ ++ K+ +F E + +++ Sbjct: 202 VTSEGAFKYFSKAYGVPSAYIWEINTEEEGTPEQIKTLVEKLRQTKVPSLFVESSVDDRP 261 Query: 250 VDTIHKETGV----EVRSLSHMTNGPYEVDSFEKFIKIDLDEVVKAI 292 + T+ ++T + ++ + S G E DS+ +K +LD++ + + Sbjct: 262 MKTVSQDTNIPIYAQIFTDSIAEQGK-EGDSYYSMMKYNLDKIAEGL 307
>adhesinb#Adhesin B signature. Length = 310 Score = 143 bits (361), Expect = 1e-42 Identities = 73/310 (23%), Positives = 138/310 (44%), Gaps = 21/310 (6%) Query: 1 MKRIIFIVFLIFNTFLL------------GQEKLKVGITLLPYYSFVANIVKDKAEVIPI 48 MK+ F+V L+ L G KL V T NI DK + I Sbjct: 1 MKKCRFLVLLLLAFVGLAACSSQKSSTETGSSKLNVVATNSIIADITKNIAGDKINLHSI 60 Query: 49 VKAESFDSHTYQPKVEDIERASKVDVVVVNGI----GHDEFIYKILDAVDKNKRPVIINA 104 V D H Y+P ED+++ S+ D++ NGI G + + K+++ K + Sbjct: 61 VPV-GQDPHEYEPLPEDVKKTSQADLIFYNGINLETGGNAWFTKLVENAKKKENKDYYAV 119 Query: 105 NKDVPLMPVAGTLNDEKIMDSHTFISITAAIQQVHNITKELVKLDPKNKDFYLANSREYV 164 ++ V ++ + G +++ D H ++++ I NI K L + DP NK+ Y N + YV Sbjct: 120 SEGVDVIYLEGQ-SEKGKEDPHAWLNLENGIIYAQNIAKRLSEKDPANKETYEKNLKAYV 178 Query: 165 KKLRKLKTDALKEVQNVNGEDVKVATFLGGYNYLLAEFGIDVKAVLEPTHGSQISMSSLQ 224 +KL L +A ++ N+ GE + T G + Y + + + E + + ++ Sbjct: 179 EKLSALDKEAKEKFNNIPGEKKMIVTSEGCFKYFSKAYNVPSAYIWEINTEEEGTPDQIK 238 Query: 225 KIIEKIKKDKVDIIFGEKNYSDEYVTIIKNETGIEVRK---LEHLTTGAYTADSFEKFIK 281 ++EK++K KV +F E + D + + +T I + + + DS+ +K Sbjct: 239 TLVEKLRKTKVPSLFVESSVDDRPMKTVSKDTNIPIYAKIFTDSVAEKGEEGDSYYSMMK 298 Query: 282 VDLDEVVSAI 291 +L+++ + Sbjct: 299 YNLEKIAEGL 308
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 337 bits (866), Expect = e-114 Identities = 122/450 (27%), Positives = 239/450 (53%), Gaps = 10/450 (2%) Query: 23 DLVFVENIMSFMEAIKSRKYEAIVIDERNSKEEALINLIVKVTEIQKKAVIIILGETSNW 82 D+ N + I + + +V D E A +L+ ++ + + ++++ + + Sbjct: 29 DVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF-DLLPRIKKARPDLPVLVMSAQNTF 87 Query: 83 RIIAGSIKAGAYDYILKPELPRTIVRIVEKSVKDYKGLVERVDKTKSTGEKLIGRSKLMI 142 + + GAYDY+ KP ++ I+ +++ + K +++ G L+GRS M Sbjct: 88 MTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQ 147 Query: 143 DLYKVIGKVANNSAPVLVTGERGTGKTSVAKAIHQFSNVYDKPLISINCNSYRANLLERK 202 ++Y+V+ ++ +++TGE GTGK VA+A+H + + P ++IN + +L+E + Sbjct: 148 EIYRVLARLMQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESE 207 Query: 203 LFGYEKGSFEGAAFSQYGELEKAEGGILHLANIESLSLDMQSKILFLLEENKFLRLGGME 262 LFG+EKG+F GA G E+AEGG L L I + +D Q+++L +L++ ++ +GG Sbjct: 208 LFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRT 267 Query: 263 PINAFVRIIASTSVNLEELIEKGLFIDELYRKLKVLEIDIPNLKERKEDIPFIIDHYMAE 322 PI + VRI+A+T+ +L++ I +GLF ++LY +L V+ + +P L++R EDIP ++ H++ + Sbjct: 268 PIRSDVRIVAATNKDLKQSINQGLFREDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQ 327 Query: 323 CNQEMNKNIKGVTKVALKKIMRYDWPGNVNELKNAIKYAVAMCRGSSILIEDLPPNVVGE 382 +E ++K + AL+ + + WPGNV EL+N ++ A+ I E + + E Sbjct: 328 AEKE-GLDVKRFDQEALELMKAHPWPGNVRELENLVRRLTALYPQDVITREIIENELRSE 386 Query: 383 --------KILNGKEESKTVSIENLVKNEINQLRSKNKKRDYYFEIISKIEKEIIKQVLE 434 S + ++E ++ Y +++++E +I L Sbjct: 387 IPDSPIEKAAARSGSLSISQAVEENMRQYFASFGDALPPSGLYDRVLAEMEYPLILAALT 446 Query: 435 ITNGKKVETAEILGITRNTLRTKMNYYDLE 464 T G +++ A++LG+ RNTLR K+ + Sbjct: 447 ATRGNQIKAADLLGLNRNTLRKKIRELGVS 476
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 53.8 bits (129), Expect = 6e-11 Identities = 33/178 (18%), Positives = 63/178 (35%), Gaps = 14/178 (7%) Query: 56 EEKPEKKVEEDKKAEKTVQVEDKPKTTPKKEKPSLADLKKQISDSQPKTSNGGFSPSADP 115 E +PE + + E V +E K KP +++ D +P S P++ Sbjct: 75 EPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPV-KKVEQPKRDVKPVES----RPASPF 129 Query: 116 DGEEVVDRVLQNVTYSNGLVSGSKMGNSEGGLLVDWNDSNRAPEFPQSARASGKHGKIKI 175 + + + S + G + S P++P A+A G++K+ Sbjct: 130 ENTAPARP---TSSTATAATSKPVTSVASGPRAL----SRNQPQYPARAQALRIEGQVKV 182 Query: 176 KLKVDKAGNVLSYVIVEGSGVPEIDASVERVVGSWRVKLLKKGKPVNGTFYLNYNFNF 233 K V G V + I+ + V+ + WR + K G + + + N Sbjct: 183 KFDVTPDGRVDNVQILSAKPANMFEREVKNAMRRWRYEPGKPGSGI--VVNILFKING 238
>PF07675#Cleaved Adhesin Length = 1358 Score = 30.1 bits (67), Expect = 0.002 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 3/80 (3%) Query: 33 ENVATTELTKQVTSENNQQLDVKEIDTEDLILQNQNLESSSVNITGENLKE--NGDKVKV 90 VAT +TKQ+T N + + + +I Q Q E S NL G KV + Sbjct: 292 SGVATVNMTKQITENGNYDVVITRSNYLPVIKQIQAGEPSPYQPV-SNLTATAQGQKVTL 350 Query: 91 NQENSATLEEELSRGVEKKG 110 + + + E SR V++ G Sbjct: 351 KWDAPSAKKAEGSREVKRIG 370
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 33.0 bits (75), Expect = 0.003 Identities = 14/34 (41%), Positives = 24/34 (70%) Query: 300 PKLIYGEAYSLYKNGKYEEALKKFQSLKNSDYYN 333 + +Y A++ Y++GKYE+A K FQ+L D+Y+ Sbjct: 36 LEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYD 69 Score = 29.9 bits (67), Expect = 0.026 Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 5/88 (5%) Query: 131 FAVAQNFLAKENNEAAQKAYKEIIDNKYENYKESMMGLGIVYYNLKDYDKAIYWLSEFSK 190 +++A N E A K ++ + + + + +GLG + YD AI+ +S Sbjct: 40 YSLAFNQYQSGKYEDAHKVFQALCVLDHYDSR-FFLGLGACRQAMGQYDLAIH---SYSY 95 Query: 191 EMPKENKE-MVSYLRASALYRKGNTDEA 217 + KE + A L +KG EA Sbjct: 96 GAIMDIKEPRFPFHAAECLLQKGELAEA 123 Score = 29.5 bits (66), Expect = 0.039 Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 6/93 (6%) Query: 543 YLNRVRNYFLAERYNEAVQAGEQYLSKLSPDKEKVIYSEMLDKIGLSYFRLGKYDQARSY 602 + N + + +Y +A + Q L L + +G +G+YD A Sbjct: 39 LYSLAFNQYQSGKYEDAHKV-FQALCVLDHYDSRFFLG-----LGACRQAMGQYDLAIHS 92 Query: 603 YSKIASMKGYEVYGKFQIADSYYNEKNYEKAGS 635 YS A M E F A+ + +A S Sbjct: 93 YSYGAIMDIKEPRFPFHAAECLLQKGELAEAES 125
>SECETRNLCASE#Bacterial translocase SecE signature. Length = 127 Score = 36.8 bits (85), Expect = 6e-07 Identities = 19/55 (34%), Positives = 33/55 (60%) Query: 3 LFQKVKMEYSKVEWPSRTEVIHSTLWVVTMTVLVSIYLGIFDILAVRALNFLEAL 57 ++ + E KV WP+R E +H+TL V +T ++S+ L D + VR ++F+ L Sbjct: 71 FAREARTEVRKVIWPTRQETLHTTLIVAAVTAVMSLILWGLDGILVRLVSFITGL 125
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 33.4 bits (76), Expect = 2e-04 Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 1/84 (1%) Query: 43 GLVFVIKENDKIVCIVEYMQVFNKKSLFLYGISTLKEYRHKGYGNYILNETEKILKNLSY 102 F+ + + ++ +N + I+ K+YR KG G +L++ + K + Sbjct: 65 KAAFLYYLENNCIGRIKIRSNWNGY-ALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHF 123 Query: 103 EEIELTVAPENDIAINFYKKHGYI 126 + L N A +FY KH +I Sbjct: 124 CGLMLETQDINISACHFYAKHHFI 147
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 109 bits (273), Expect = 1e-31 Identities = 37/113 (32%), Positives = 60/113 (53%), Gaps = 13/113 (11%) Query: 38 FDFDKSNVKPQYYDLLNNIKEFVEQ---NNYEITIVGHTDSIGSNAYNFKLSRRRAESVK 94 F+F+K+ +KP+ L+ + + + + ++G+TD IGS+AYN LS RRA+SV Sbjct: 223 FNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSVV 282 Query: 95 AKLLEFGLSEDRIVGIEAMGEEQPIATN---------ATKEGRAQNRRVEFKL 138 L+ G+ D+I MGE P+ N A + A +RRVE ++ Sbjct: 283 DYLISKGIPADKI-SARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEV 334
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 31.0 bits (70), Expect = 0.013 Identities = 30/179 (16%), Positives = 54/179 (30%), Gaps = 21/179 (11%) Query: 42 NNFLGWLDLPINYDKEEFSRIKKASEKIKADSDVLIVIGIGGS-YLGARAVIECLSHSFF 100 F GW + ++ ++ ++ + + G L R L SF Sbjct: 509 GGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLR-----LPSSFL 563 Query: 101 NSLNK----------EKRNAPEIYFAGQNISGRYLKDLIEIIGDRDFSVNIISKSGTTTE 150 ++ ++ YLK+ + F+VN S SG Sbjct: 564 PEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKNEKANVE-SVFTVNGFSFSGQAQN 622 Query: 151 PAIAFRVFKELLENKYGEKAKDRIYVTTDKNKGALKKLADEKGYEKFVIPDDVGGRFSV 209 +AF K E E + + + + K L K+ D F +P V + Sbjct: 623 AGMAFVSLKPWEERNGDENSAEAVI---HRAKMELGKIRDGFVIP-FNMPAIVELGTAT 677
>PF04183#IucA / IucC family Length = 580 Score = 27.2 bits (60), Expect = 0.048 Identities = 9/32 (28%), Positives = 15/32 (46%) Query: 68 DEYDSPLVSAYINGYYESAKDFFKTFYSTVLK 99 DE + PL AYI+ A+ + + V+ Sbjct: 375 DENNQPLAGAYIDRSGLDAETWLTQLFRVVVV 406
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 26.4 bits (58), Expect = 0.047 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 12/78 (15%) Query: 37 KSKIIDTPGEYVENKMYYKSLLVLSADAKIIVLVQSAIDGATLFPPKFSTMFPKKEVIGL 96 K IIDTPG Y+SL VL +L+ SA DG + +F +G+ Sbjct: 69 KVNIIDTPGHMDFLAEVYRSLSVLDG----AILLISAKDGVQ---AQTRILFHALRKMGI 121 Query: 97 -----VTKIDLADADIER 109 + KID D+ Sbjct: 122 PTIFFINKIDQNGIDLST 139
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 73.5 bits (180), Expect = 1e-17 Identities = 51/192 (26%), Positives = 81/192 (42%), Gaps = 6/192 (3%) Query: 3 IFIVGGSSGIGLSLAKRYASLGNEVAICGTNEEKLKKIEECNKNI----KIYKVDVRNKE 58 FI G + GIG ++A+ AS G +A N EKL+K+ K + + DVR+ Sbjct: 11 AFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDSA 70 Query: 59 ELKSAIDDFSK--GNLDLIINSAGIYTNNRTTKLTDKEAYAMIDINLTGVLNTFEAVRDV 116 + + G +D+++N AG+ L+D+E A +N TGV N +V Sbjct: 71 AIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSKY 130 Query: 117 MFKNNRGHIAIISSVAGLLDYPKASVYARTKMTIMGVCETYRSFFRNYNINITTIVPGYI 176 M G I + S + + YA +K + + YNI + PG Sbjct: 131 MMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPGST 190 Query: 177 ATDKLKSLSEED 188 TD SL ++ Sbjct: 191 ETDMQWSLWADE 202
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 71.4 bits (175), Expect = 1e-16 Identities = 26/107 (24%), Positives = 48/107 (44%), Gaps = 4/107 (3%) Query: 5 IIVEDELPAREELKYFVNEEKEIKLIAEFDNPLDTLNFLENNTADVIFLDINMPDMNGIS 64 ++ +D+ R L ++ I N ++ D++ D+ MPD N Sbjct: 7 LVADDDAAIRTVLNQALSRAGYDVRITS--NAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 65 LGKIITKMYPDMKIVFITAYKDY--AVDAFEIKAFDYLLKPYSESRI 109 L I K PD+ ++ ++A + A+ A E A+DYL KP+ + + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTEL 111
>PF06580#Sensor histidine kinase Length = 349 Score = 208 bits (532), Expect = 7e-65 Identities = 66/201 (32%), Positives = 117/201 (58%), Gaps = 7/201 (3%) Query: 336 ENLISLLKYSELKALQSQINPHFLFNVLNTMTSLIRTNPEKAREVTIDLSNYLRYNLDN- 394 + S+ + ++L AL++QINPHF+FN LN + +LI +P KARE+ LS +RY+L Sbjct: 152 WKMASMAQEAQLMALKAQINPHFMFNALNNIRALILEDPTKAREMLTSLSELMRYSLRYS 211 Query: 395 NVKSVELIKELNQIDNYIKIEKARFGDKLNIVYDVDESLYNFQIPSLIIQPLVENSIKHG 454 N + V L EL +D+Y+++ +F D+L ++ ++ + Q+P +++Q LVEN IKHG Sbjct: 212 NARQVSLADELTVVDSYLQLASIQFEDRLQFENQINPAIMDVQVPPMLVQTLVENGIKHG 271 Query: 455 ILKKRENGCVKVIVKKIDKDIEVIIEDDGVGIEQTVIDNLDKQIQENIGLKNVHQRLKLL 514 I + + G + + K + + + +E+ G + ++ GL+NV +RL++L Sbjct: 272 IAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKES------TGTGLQNVRERLQML 325 Query: 515 YGEGLNIKKLEQGTRINFRIL 535 YG IK E+ ++N +L Sbjct: 326 YGTEAQIKLSEKQGKVNAMVL 346
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 29.0 bits (65), Expect = 0.036 Identities = 54/337 (16%), Positives = 109/337 (32%), Gaps = 53/337 (15%) Query: 52 IALAVSRFVDMITDPLVGFMSDKYNSKYGRRIPFVAVGTIPLILVTIAFFYPPTSNERAS 111 I LA+ + P++G +SD++ GRR P++LV++A A Sbjct: 47 ILLALYALMQFACAPVLGALSDRF----GRR---------PVLLVSLAGA--------AV 85 Query: 112 FYYLMIVGSLFFTFYT------IVGAPY---NALIPEIGRTPEERLNLSTWQSVFRLSYT 162 Y +M + Y I GA A I +I T + + + Sbjct: 86 DYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADI--TDGD-------ERARHFGFM 136 Query: 163 AVAIILPGILIKMIGGDNVLFGIRGMIIFLCVIVFIGLAVTVFIIRERDYSTG-EVSNVS 221 + + ++GG F + + F++ E + + Sbjct: 137 SACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREA 196 Query: 222 FKDTIGIIIKNKNFILYLFGMMFFFIGFNN--LRAIMNYYVEDIMGYGKREITLVSAVLF 279 ++ +FF + A+ + ED + I +S F Sbjct: 197 LNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIG-ISLAAF 255 Query: 280 GSAAICF--YPTNKLSKKYGYRKIMLCCLAMLIVTTSMLFFLGKIFPVNFGFVLFGLIGI 337 G T ++ + G R+ ++ + +L F + + VL GI Sbjct: 256 GILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGI 315 Query: 338 PLAGAAFIFPPAMLSEISTQISEDSGARIEGISFGIQ 374 + PA+ + +S Q+ E+ +++G + Sbjct: 316 GM--------PALQAMLSRQVDEERQGQLQGSLAALT 344
>PF06340#Vibrio cholerae toxin co-regulated pilus biosynthesis protein F (TcpF) Length = 338 Score = 27.7 bits (61), Expect = 0.033 Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 5/68 (7%) Query: 131 DYIDGLVNIGIKRILTSGGKATALEGKDLINEMIKKTNGRLKIVVAGKVTKENLNDLSNL 190 D I+ LVN + L++ + G+ L K NGR IV G V L + Sbjct: 133 DQIETLVNYANEGKLSTALNQEYITGRFLT-----KENGRYDIVNVGGVPDNTPVKLPAI 187 Query: 191 ISADEFHG 198 +S G Sbjct: 188 VSKRGLMG 195
>OMADHESIN#Yersinia outer membrane adhesin signature. Length = 455 Score = 45.7 bits (107), Expect = 2e-07 Identities = 49/182 (26%), Positives = 82/182 (45%), Gaps = 9/182 (4%) Query: 10 AAGVSYSA-PTIEAGTGADSTKAGIGNEASGDNSSAFGFENTASGKNSSAIGNKNEASGF 68 A G+ Y P + G +++ GI + A G + A A G S A G + A G Sbjct: 46 ALGLEYPVRPPVPGAGGLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGP 105 Query: 69 ESSVLGGKYKVTGSHSGAFGDPNVV-----TGNGSYAFGNDNTINGNNNFVLGNNVTIGS 123 S LG G+ S A D + T + A G ++ + N+ +G++ + + Sbjct: 106 LSKALGDSAVTYGAASTAQKDGVAIGARASTSDTGVAVGFNSKADAKNSVAIGHSSHVAA 165 Query: 124 GIQNSVALGNGSVVSFSNEVSVGSKGKERKITNVADGEVSATSTDAVNGRQLYNAMQNSN 183 S+A+G+ S N VS+G + R++T++A G TDAVN QL ++ + Sbjct: 166 NHGYSIAIGDRSKTDRENSVSIGHESLNRQLTHLAAG---TKDTDAVNVAQLKKEIEKTQ 222 Query: 184 DN 185 +N Sbjct: 223 EN 224
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 58.1 bits (140), Expect = 7e-13 Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 1/83 (1%) Query: 6 KEEIKNRIYKAASKIFYEKGFLKTKMKDISEEAKIPVGLVYTYYKNKEELFDEIVNPIYY 65 +E + I A ++F ++G T + +I++ A + G +Y ++K+K +LF EI Sbjct: 9 AQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSES 68 Query: 66 YLN-LAIEKEEKEEGSALERFKA 87 + L +E + K G L + Sbjct: 69 NIGELELEYQAKFPGDPLSVLRE 91
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 595 bits (1536), Expect = 0.0 Identities = 222/1040 (21%), Positives = 455/1040 (43%), Gaps = 50/1040 (4%) Query: 11 LIKIAIKRTIVTTMISISLLILGIFAMKSMRTELLPDIEYPVVKIITHWSGASAEDVEKQ 70 + I+R I +++I L++ G A+ + P I P V + ++ GA A+ V+ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 71 ITNKIERILPNVEGIENISSES-SYENSSISVEFNYGVNIQDKVTEIQREVFQIKNDLPN 129 +T IE+ + ++ + +SS S S + +I++ F G + ++Q ++ LP Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 130 SAKNPIIKKTEVGAGAITLFLTFVSPDKKA----LFSYLENYVKPNLETISGVAEVSILG 185 + I E + + + FVS + + Y+ + VK L ++GV +V + G Sbjct: 121 EVQQQGISV-EKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG 179 Query: 186 GTKKQLQIQIEPAKLASYNLTPMDIYQLIRKSSMVIPLGSLMNG------REEYVIQALG 239 + ++I ++ L Y LTP+D+ ++ + I G L + I A Sbjct: 180 A-QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQT 238 Query: 240 ELESVEEYENILLHSN--GDTLRLKDIANVVLTEEDPLNLGFNRGKPATTIAISKSSDGS 297 ++ EE+ + L N G +RLKD+A V L E+ + GKPA + I ++ + Sbjct: 239 RFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGAN 298 Query: 298 TIEINEKIMKAIKNMEETMPSNITYFKIFDSSESIKKSINTVGKSALQGLILASLFLWIF 357 ++ + I + ++ P + +D++ ++ SI+ V K+ + ++L L +++F Sbjct: 299 ALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLF 358 Query: 358 FKNKKMTLIVSFAFPLAISTTFILMKGIHSTFNLISLMGLAIGVGMLTDNSVVVIDNIYN 417 +N + TLI + A P+ + TF ++ + N +++ G+ + +G+L D+++VV++N+ Sbjct: 359 LQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER 418 Query: 418 HIQEEK-NSIEAAFIGTNQVFSSVLASTLTSIIVFLPIIFTKGIFKEMFQDMVWAIIFSN 476 + E+K EA +Q+ +++ + VF+P+ F G +++ I+ + Sbjct: 419 VMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAM 478 Query: 477 VAALLVSVTFIPMLASKFMKKNIIQTEG----------KYFSKIQRKYQKFLSISLKHKK 526 ++LV++ P L + +K + F Y + L Sbjct: 479 ALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTG 538 Query: 527 KTVLISLLFAFLIFGIGGKFVKFGFLTKQDYGYYSVIAEFQNGSDFEKIQELRNEIETII 586 + +LI L + + + FL ++D G + + + G+ E+ Q++ +++ Sbjct: 539 RYLLIYALIVAGMV-VLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYY 597 Query: 587 KK--ESHTKSYFSIIQKRNGTISVNVDVGF--------KEKRKESIFEIVKKVRKEVEKI 636 K +++ +S F++ + N + F + + S ++ + + E+ KI Sbjct: 598 LKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKI 657 Query: 637 PDIRTTFF-----YEYAKGKPKKDIEFQIVGTDLETIQILARQIYKDVLK-IKGVTDVSS 690 D F E G + + Q+ + + V Sbjct: 658 RDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRP 717 Query: 691 TLDSGGKKLEIIFKRDKIQSLNISIKQIEETISYYLLGGDRANTITIKSGNEEIEVLVRL 750 + ++ ++K Q+L +S+ I +TIS LGG N ++ V+ Sbjct: 718 NGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTA-LGGTYVNDFI--DRGRVKKLYVQA 774 Query: 751 SKDNRKSIKQLENLKIKVTDNSFINLSEIADIRKVENQLSIDKINRFYSVSIYVND-GGI 809 R + ++ L ++ + + S V +++ N S+ I G Sbjct: 775 DAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGT 834 Query: 810 GTQKIQEELVKIFSEKNKDSSIQYRWGGDAEKMQRAMKELMLTFLIAIFLIYALLASQFE 869 + + + + I Y W G + + + + + I+ +++ LA+ +E Sbjct: 835 SSGDAMALMENL--ASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYE 892 Query: 870 SFLFPFLVMGSIPFSLVGVIIGFLITQHTLDAVAMVGIILLIGIVVNNAIVLLDFIQQ-E 928 S+ P VM +P +VGV++ + D MVG++ IG+ NAI++++F + Sbjct: 893 SWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLM 952 Query: 929 EKESKNKKEAIEKACNLRLRPILLTSLTTIVGMIPLSLGIGDGSEVYQGLGISIIFGMSF 988 EKE K EA A +RLRPIL+TSL I+G++PL++ G GS +GI ++ GM Sbjct: 953 EKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVS 1012 Query: 989 STLLTLIFVPTTYYMLTSIF 1008 +TLL + FVP + ++ F Sbjct: 1013 ATLLAIFFVPVFFVVIRRCF 1032
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.0 bits (67), Expect = 0.010 Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 9/66 (13%) Query: 181 HLKKRDLGILITDHNV--RETLSITDKSYIMAKG-------KVLIEGTPREIANNPEARR 231 H++ D G + +HN+ ++IT +S I E P + + Sbjct: 533 HIRNIDDGARLVNHNMTNASNITITGESLITDPNTITPYNIDAPDEDNPYAFRRIKDGGQ 592 Query: 232 IYLGEK 237 +YL + Sbjct: 593 LYLNLE 598
>adhesinb#Adhesin B signature. Length = 310 Score = 31.4 bits (71), Expect = 0.013 Identities = 28/144 (19%), Positives = 56/144 (38%), Gaps = 16/144 (11%) Query: 706 LKNIEQKLKATNSNLVEKVEKNL----ETLKDTEKEL-----EILKQKLALFETKAAISG 756 +NI ++L + E EKNL E L +KE I +K + ++ Sbjct: 152 AQNIAKRLSEKDPANKETYEKNLKAYVEKLSALDKEAKEKFNNIPGEKKMIVTSEGCFKY 211 Query: 757 MEEIGGVKVL----IAAFKDKSTEDLRTMIDTIKDNNEKAIIVLASTQDKLAFAVGVTKT 812 + V I ++ + + ++T+++ ++ ++ V +S D+ V+K Sbjct: 212 FSKAYNVPSAYIWEINTEEEGTPDQIKTLVEKLRKTKVPSLFVESSVDDRPMKT--VSKD 269 Query: 813 LTDKIKAGDLVKKLAEITGGKGGG 836 I A +AE G +G Sbjct: 270 TNIPIYAKIFTDSVAE-KGEEGDS 292
>SECFTRNLCASE#Bacterial translocase SecF protein signature. Length = 333 Score = 64.1 bits (156), Expect = 2e-13 Identities = 31/167 (18%), Positives = 76/167 (45%), Gaps = 3/167 (1%) Query: 228 TVGATLGDESIAQSKNAGMVAIVLIWVFMII-FYRLPGIIADLAIIIFGFITFACLNFID 286 +VG + E + + + + A V+I ++ + F + A +A++ +T + Sbjct: 142 SVGPKVSGELVWTAVWSLLAATVVIMFYIWVRFEWQFALGAVVALVHDVLLTVGLFAVLQ 201 Query: 287 ATLTLPGIAGFILSLGMAVDANVIIFERIKEELRF--GNSIRNSIDSGFNKGFIAIFDSN 344 L +A + G +++ V++F+R++E L +R+ ++ N+ + Sbjct: 202 LKFDLTTVAALLTITGYSINDTVVVFDRLRENLIKYKTMPLRDVMNLSVNETLSRTVMTG 261 Query: 345 LTTLIITTILFVFGTGPIKGFAVTLALGTLASMFTAITVTKVLLLTF 391 +TTL+ + ++G I+GF + G ++++ V K ++L Sbjct: 262 MTTLLALVPMLIWGGDVIRGFVFAMVWGVFTGTYSSVYVAKNIVLFI 308
>SECFTRNLCASE#Bacterial translocase SecF protein signature. Length = 333 Score = 258 bits (661), Expect = 4e-87 Identities = 91/310 (29%), Positives = 167/310 (53%), Gaps = 15/310 (4%) Query: 2 KTNLHVIKNIKIYLSISLVLVTLSIVIFFTKGLNYGIDFSGGNLFQLKYNGTTVTLNQIN 61 KTN + ++V++ S+++ GLN+GIDF GG + + T + + Sbjct: 11 KTNFDFFRWQWATFGAAIVMMIASVILPLVIGLNFGIDFKGGTTIRTEST-TAIDVGVYR 69 Query: 62 ENLDKLAKELPQI------------NSNSRKVQISDDGTIIVRVPEISENDKGKVLNNLK 109 L+ L I + ++Q+ +DG + KV L Sbjct: 70 AALEPLELGDVIISEVRDPSFREDQHVAMIRIQMQEDGQGAEGQGAQGQELVNKVETALT 129 Query: 110 ELG-SYTLDKEDKVGASIGDDLKKSAIYSLGIGAILIVIYITMRFEFSFAIGGILSLLHD 168 + + + + VG + +L +A++SL ++I+ YI +RFE+ FA+G +++L+HD Sbjct: 130 AVDPALKITSFESVGPKVSGELVWTAVWSLLAATVVIMFYIWVRFEWQFALGAVVALVHD 189 Query: 169 IIIAVGFIALMGYEVDTPFIAAILTILGYSINDTIVIYDRIRENLKRKHKGWILEQCMDE 228 +++ VG A++ + D +AA+LTI GYSINDT+V++DR+RENL K+K L M+ Sbjct: 190 VLLTVGLFAVLQLKFDLTTVAALLTITGYSINDTVVVFDRLRENL-IKYKTMPLRDVMNL 248 Query: 229 SINQTAIRSLNTSVTTLFSVIAILVFGGASLKTFIMTLLIGILAGTYSSIFVATPVVYLL 288 S+N+T R++ T +TTL +++ +L++GG ++ F+ ++ G+ GTYSS++VA +V + Sbjct: 249 SVNETLSRTVMTGMTTLLALVPMLIWGGDVIRGFVFAMVWGVFTGTYSSVYVAKNIVLFI 308 Query: 289 NKRKGNNMED 298 + +D Sbjct: 309 GLDRNKEKKD 318
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 112 bits (281), Expect = 9e-31 Identities = 48/132 (36%), Positives = 71/132 (53%), Gaps = 12/132 (9%) Query: 193 PPVPSIEANSLLITLDSGILFDVDKYDVRPEAEEVLKNLVIVLKEADIK--AFEIDGHTD 250 P P+ E + TL S +LF+ +K ++PE + L L L D K + + G+TD Sbjct: 203 APAPAPEVQTKHFTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD 262 Query: 251 SDASDEHNQVLSENRANAVKNFLTSQGIMAE-ITIKGYGESRPIASNDTPEGKQK----- 304 SD +NQ LSE RA +V ++L S+GI A+ I+ +G GES P+ N KQ+ Sbjct: 263 RIGSDAYNQGLSERRAQSVVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALID 322 Query: 305 ----NRRVEIVI 312 +RRVEI + Sbjct: 323 CLAPDRRVEIEV 334
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 34.5 bits (79), Expect = 8e-05 Identities = 13/51 (25%), Positives = 23/51 (45%) Query: 92 IDEQHRNNGLGHLLVDKHLDWLKDNKCESIFVNVLVENESTISFYESLGFK 142 + + +R G+G L+ K ++W K+N + + N S FY F Sbjct: 97 VAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFI 147
>cloacin#Cloacin signature. Length = 551 Score = 32.4 bits (73), Expect = 0.005 Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 2/59 (3%) Query: 549 NNNFSRSFNNLNGMVSK--TNSRASSAIASSRRSSSSGGGGGFSSGSSGGGGSRGGGGG 605 N + N+NG + AS S ++ GGG G GG G GGG Sbjct: 10 NTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGN 68
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 58.2 bits (140), Expect = 1e-10 Identities = 43/323 (13%), Positives = 106/323 (32%), Gaps = 10/323 (3%) Query: 195 EINLDKVEFILNETRENKNKIEKQAELAQKYIDLRDEKSSLAKGI---YITELEQKEKNL 251 L+KV+ ++ N ++ + + + +L + +K+L Sbjct: 49 TDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSL 108 Query: 252 SENENIKEKYQTECFELQEKLNKTLERLNTIDLEKEEVKKEKLLIDSRNKELRNIISEKE 311 SE + ++ + +L++ L + + + ++ EK + +R +L + Sbjct: 109 SEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAM 168 Query: 312 KEKAVTSERLDNVKKEKLVKEEYILHLDNKIEKKLEEVTESKNKKDEISKNIVEMAAANK 371 S ++ ++ EK E L+ +E + T K + +AA Sbjct: 169 NFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKA 228 Query: 372 EFENKIFNLENIKVEKFDLIENRAKKVRDLELEKQLASNEIENNEKKLKSSQDEVENFKQ 431 + E + N I+ + LE + +E + +++ + Sbjct: 229 DLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEA 288 Query: 432 ELEEANKKLLANNKEKDL-------VHSQLEARKEELTKTEERNEFLVNQLSEISKSINK 484 E + + + + L+A +E + E ++ L Q S Sbjct: 289 EKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQS 348 Query: 485 LSQDIREFEYQEKTSSGKLEALV 507 L +D+ +K + + L Sbjct: 349 LRRDLDASREAKKQLEAEHQKLE 371 Score = 47.0 bits (111), Expect = 4e-07 Identities = 44/287 (15%), Positives = 102/287 (35%), Gaps = 7/287 (2%) Query: 683 KKEIKTLEEKVTDLKSKITEGSKKREDLSIKLENYENEVDKIDSLEDSIRKDIDLLKKDF 742 + E L + DL+ + S K++ E E +++ + + K ++ Sbjct: 147 EAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFS 206 Query: 743 ESLSEKSEKLSKDIRSISFNIEDAEKYKTSYQDRINSSFSTIEETEKHIASLKKDIEADE 802 + S K + L + +++ D EK + + + I+ E A+L+ E Sbjct: 207 TADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELE 266 Query: 803 NLLKQTISEIDSLNKQFSDTRILFLNNQSTIEQLEKDIHSKEIENVELQEEKEKNSKIVI 862 L+ ++ + + + ++ LE ++ N Q + Sbjct: 267 KALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQ---SQVLNANRQSLRRDLDASRE 323 Query: 863 ELSHNIEELETLEEELQSQIEEHTKIYNSENRDIETLNEREQNLSNEERELSKDKSKLET 922 E + LEE+ + + RD++ E ++ L E ++L + E Sbjct: 324 AKKQLEAEHQKLEEQNKISEASRQSL----RRDLDASREAKKQLEAEHQKLEEQNKISEA 379 Query: 923 DSLHANDRFEKIVEVIEKIKVDILNINEKLNELVEITAQVIEVEKLK 969 + E ++++ + N KL L ++ ++ E +KL Sbjct: 380 SRQSLRRDLDASREAKKQVEKALEEANSKLAALEKLNKELEESKKLT 426 Score = 44.3 bits (104), Expect = 3e-06 Identities = 62/360 (17%), Positives = 132/360 (36%), Gaps = 9/360 (2%) Query: 154 GKVERIINSSPKEIKSIIEEAAGIKKLQANRIEAQKNLANIEINLDKVEFILNETRENKN 213 ++ + +E+ + E+ K + + + L + +L+K + Sbjct: 81 KALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADS 140 Query: 214 KIEKQAELAQKYIDLRDEKSSLAKGIYITELEQKEKNLSENENIKEKYQTECFELQEKLN 273 K E + + R A + + E K + EL++ L Sbjct: 141 AKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALE 200 Query: 274 KTLERLNTIDLEKEEVKKEKLLIDSRNKELRNIISEKEKEKAVTSERLDNVKKEKLVKEE 333 + + + ++ EK + +R +L + S ++ ++ EK E Sbjct: 201 GAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEA 260 Query: 334 YILHLDNKIEKKLEEVTESKNKKDEISKNIVEMAAANKEFENKIFNLE-NIKVEKFDLIE 392 L+ +E + T K + + A + E++ L N + + DL Sbjct: 261 RQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDA 320 Query: 393 NRAKKVRDLELEKQLASNEIENNEKKLKSSQ---DEVENFKQELEEANKKLLANNKEKDL 449 +R K + LE E Q + + +E +S + D K++LE ++KL NK + Sbjct: 321 SREAK-KQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEA 379 Query: 450 ----VHSQLEARKEELTKTEERNEFLVNQLSEISKSINKLSQDIREFEYQEKTSSGKLEA 505 + L+A +E + E+ E ++L+ + K +L + + E ++ KLEA Sbjct: 380 SRQSLRRDLDASREAKKQVEKALEEANSKLAALEKLNKELEESKKLTEKEKAELQAKLEA 439 Score = 40.8 bits (95), Expect = 3e-05 Identities = 30/215 (13%), Positives = 77/215 (35%) Query: 743 ESLSEKSEKLSKDIRSISFNIEDAEKYKTSYQDRINSSFSTIEETEKHIASLKKDIEADE 802 E + E+++K + ++ D + +D + + ++ + K + Sbjct: 53 EKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKA 112 Query: 803 NLLKQTISEIDSLNKQFSDTRILFLNNQSTIEQLEKDIHSKEIENVELQEEKEKNSKIVI 862 + +++ + L K + + I+ LE + + +L++ E Sbjct: 113 SKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFST 172 Query: 863 ELSHNIEELETLEEELQSQIEEHTKIYNSENRDIETLNEREQNLSNEERELSKDKSKLET 922 S I+ LE + L+++ E K + + + L E+ L+ K+ LE Sbjct: 173 ADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEK 232 Query: 923 DSLHANDRFEKIVEVIEKIKVDILNINEKLNELVE 957 A + I+ ++ + + + EL + Sbjct: 233 ALEGAMNFSTADSAKIKTLEAEKAALEARQAELEK 267
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 31.3 bits (71), Expect = 0.001 Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 6/69 (8%) Query: 3 IAIYGGSFNPMHIGHEKIVDYVLKNLDM-DKIIIIPVGIPSHRENNLEQSDTRLKICKEI 61 AIY GSF+P+ GH +D + + + D++ + + P+ + + RL+ + Sbjct: 2 NAIYPGSFDPITFGH---LDIIERGCRLFDQVYVAVLRNPN--KQPMFSVQERLEQIAKA 56 Query: 62 FKNNKKVEV 70 + +V Sbjct: 57 IAHLPNAQV 65
>PF06580#Sensor histidine kinase Length = 349 Score = 31.8 bits (72), Expect = 0.005 Identities = 25/123 (20%), Positives = 46/123 (37%), Gaps = 30/123 (24%) Query: 316 EIFIDSDIG---LLKLLFKNLIENAIKYG-----NDNPINIE-LKKEKKIKVIIEDFGIG 366 E I+ I + +L + L+EN IK+G I ++ K + + +E+ G Sbjct: 243 ENQINPAIMDVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSL 302 Query: 367 ISKEAIPHIFERFYREDEARNREIKSYGLGLSIVKEIVALL---NIDIQIESQINKGTKI 423 K +S G GL V+E + +L I++ + K + Sbjct: 303 ALKN------------------TKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAM 344 Query: 424 TLL 426 L+ Sbjct: 345 VLI 347
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 96.1 bits (239), Expect = 4e-25 Identities = 28/114 (24%), Positives = 60/114 (52%), Gaps = 1/114 (0%) Query: 12 KILIIEDDKNIQRLLTLELRHKNYSVDSAYDGEQGIEMFSKNSYDLVLLDLMLPKKSGKE 71 IL+ +DD I+ +L L Y V + + DLV+ D+++P ++ + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 72 VCQELRKL-AETPIIIITAKDSVLDKVELLDLGANDYICKPFAMEELLARIRVA 124 + ++K + P+++++A+++ + ++ + GA DY+ KPF + EL+ I A Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRA 118
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 108 bits (270), Expect = 2e-30 Identities = 41/124 (33%), Positives = 65/124 (52%), Gaps = 11/124 (8%) Query: 90 INLPGGVTFASDSANITSGFYSALNGIAQSLNNY--PETRIQVNGYTDNTGKDAHNQELS 147 L V F + A + +AL+ + L+N + + V GYTD G DA+NQ LS Sbjct: 215 FTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLS 274 Query: 148 QRRANAVAQYLIAQGVSSNRIVANGFGSSNPIASNST---------PEGRLQNRRVEIKI 198 +RRA +V YLI++G+ +++I A G G SNP+ N+ + +RRVEI++ Sbjct: 275 ERRAQSVVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEV 334 Query: 199 LPAQ 202 + Sbjct: 335 KGIK 338
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 34.5 bits (79), Expect = 1e-04 Identities = 24/152 (15%), Positives = 53/152 (34%), Gaps = 18/152 (11%) Query: 13 ENVEYFSEIIDRIND---IQENNNYSDEEMDNDLDVALWRAFVYINLWSYKGYAKAERIL 69 + EY + + I N S + ++ +A N + Y A ++ Sbjct: 7 DTQEYQLAMESFLKGGGTIAMLNEISSDTLEQLYSLAF-------NQYQSGKYEDAHKVF 59 Query: 70 KKVENKGIKNPIWCYRYAVSIA----RLRKYEEALKYFLIGTEVDSTYPWNWLELGRLYY 125 + + + + + R+ + + + +Y+ A+ + G +D P Sbjct: 60 QAL---CVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIKEPRFPFHAAECLL 115 Query: 126 KFGELDKVFECIEKGLELVPNDYEFLTLKDDV 157 + GEL + + EL+ + EF L V Sbjct: 116 QKGELAEAESGLFLAQELIADKTEFKELSTRV 147
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 51.2 bits (122), Expect = 3e-10 Identities = 23/139 (16%), Positives = 56/139 (40%), Gaps = 7/139 (5%) Query: 6 DKKYLILEKAKDMIITESYSSLSISKLTSELSISKGSFYTYFPSKDKMLSEILDEYIKNI 65 + + IL+ A + + SS S+ ++ +++G+ Y +F K + SEI + NI Sbjct: 11 ETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNI 70 Query: 66 IIFKNNLLE-----NSKNIDECLDYYINSILSLTDEELKLELVITNLKRNYEVFNEENFK 120 + + E L + + S ++ L +E++ + E+ + + Sbjct: 71 GELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQ--Q 128 Query: 121 KLKIIACTMIDFVKEVLNK 139 + + D +++ L Sbjct: 129 AQRNLCLESYDRIEQTLKH 147
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 53.7 bits (129), Expect = 5e-10 Identities = 43/252 (17%), Positives = 75/252 (29%), Gaps = 59/252 (23%) Query: 105 AQTEADFLQAKANYQSATSNYNIARNNYQKFKTLYDKQLISYLEFSNYQASYTSAQGNLE 164 + A+ L A + + ++ F +L KQ I+ + Y A L Sbjct: 210 DKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELR 269 Query: 165 V--------------AKATYMNAQNSYSKLVA---------------------------- 182 V AK Y + + Sbjct: 270 VYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASV 329 Query: 183 -RAEISGIVGNLFIK-EGNDIAAKEVLFTIL-NDKQMQSYVGITPEAISKVKLGDEINVK 239 RA +S V L + EG + E L I+ D ++ + + I + +G +K Sbjct: 330 IRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIK 389 Query: 240 IDAL----AKEYKAKITELNP--IADSTTKN-FKVKLALDNPDG-------EIKDGMFGN 285 ++A K+ +N I D F V ++++ + GM Sbjct: 390 VEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVIISIEENCLSTGNKNIPLSSGMAVT 449 Query: 286 VIIPVGESSVLS 297 I G SV+S Sbjct: 450 AEIKTGMRSVIS 461 Score = 49.4 bits (118), Expect = 1e-08 Identities = 21/109 (19%), Positives = 46/109 (42%), Gaps = 4/109 (3%) Query: 78 KGGTVKTIYKKNGEYVKKGEVIVKLSDAQTEADFLQAKANYQSATSNYNIARNNYQKFKT 137 + VK I K GE V+KG+V++KL+ EAD L+ +++ A + + YQ Sbjct: 103 ENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQAR----LEQTRYQILSR 158 Query: 138 LYDKQLISYLEFSNYQASYTSAQGNLEVAKATYMNAQNSYSKLVARAEI 186 + + L+ + ++ + + +++ + E+ Sbjct: 159 SIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKEL 207
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 647 bits (1670), Expect = 0.0 Identities = 227/1041 (21%), Positives = 487/1041 (46%), Gaps = 54/1041 (5%) Query: 3 LAGISIRRPVATTMVMVSFIFIGLLAMFSMKKELIPNIKIPVVTITTTWTGAVSENVETQ 62 +A IRRP+ ++ + + G LA+ + P I P V+++ + GA ++ V+ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 63 VTKKIKDSLSNVDAIDKIQTVSA-YGVSNVVVNFDYGVDTDEKVTQIQREVSKIANNLPN 121 VT+ I+ +++ +D + + + S G + + F G D D Q+Q ++ LP Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 122 DANTPLVRKIEAAGGNMTAIIAFNADSK----TALTTFIKEQLKPRLESLPGIGQVDIFG 177 + + +E + + + F +D+ ++ ++ +K L L G+G V +FG Sbjct: 121 EVQQQGIS-VEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG 179 Query: 178 NPDKQLQIQVDSDKLASYNLSPMELYNIVRTSVATYPIGKLSTG------NKDMIIRFMG 231 ++I +D+D L Y L+P+++ N ++ G+L + I Sbjct: 180 -AQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQT 238 Query: 232 ELDYIDQYKNILI--SSDGNTLRLKDVADIVLTTEDADNVGYLNGKESVVVLLQKSSDGD 289 +++ + + +SDG+ +RLKDVA + L E+ + + +NGK + + ++ ++ + Sbjct: 239 RFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGAN 298 Query: 290 TITLNNAAFKVIEEMKPYMPAGTEYSIEMDASENINSSISNVSSSAIQGLVLATIILFIF 349 + A + E++P+ P G + D + + SI V + + ++L +++++F Sbjct: 299 ALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLF 358 Query: 350 LKSFRTTILISLALPVAIIFTFAFLSMRGTTLNLISLMGLSIGVGMLTDNSVVVVDNIYR 409 L++ R T++ ++A+PV ++ TFA L+ G ++N +++ G+ + +G+L D+++VVV+N+ R Sbjct: 359 LQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER 418 Query: 410 HITELNSPVMEASENATEEVTFSVIASALTTIVVFLPILFIPGLAREFFRDMSYAIIFSN 469 + E P EA+E + ++ +++ A+ VF+P+ F G +R S I+ + Sbjct: 419 VMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAM 478 Query: 470 LAAIIVAITMIPMLASRFLDRKSMKSEDG-----------RLFKKIKAFYLKVINKAISH 518 +++VA+ + P L + L K + +E F Y + K + Sbjct: 479 ALSVLVALILTPALCATLL--KPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGS 536 Query: 519 KGLTVLIMVVLFFFSIFVGPKLLKFEFMPKQDEGKYSLTAELQNGTDLNKAERIAKELEE 578 G +LI ++ + + +L F+P++D+G + +L G + +++ ++ + Sbjct: 537 TGRYLLIYALIVAGMVVLFLRLPS-SFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTD 595 Query: 579 II-KSDPHTQSYLMLVSTSSISVNA-NVGK----------KNTRDDSVFTIMNDIRNKTS 626 K++ + V+ S S A N G +N ++S +++ + + Sbjct: 596 YYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELG 655 Query: 627 KVLDARVSMTNQFS----GGQTNKDVQ-FLLQGSNQNEIKQLGKQLLEKLQSYNG-MVDI 680 K+ D V N + G T D + G + + Q QLL + +V + Sbjct: 656 KIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSV 715 Query: 681 SSTLDPGIIELRVNIDRDKIASYGISPTVVAQTISYYMLGGDKANTATLKTDTEEIDVLV 740 + ++ +D++K + G+S + + QTIS LGG N + V Sbjct: 716 RPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTA-LGGTYVN--DFIDRGRVKKLYV 772 Query: 741 RLPKDKRNDINTLASLNIKVGDNKFVKLSDVATLQYAEGTSEIRKKNGIYTVTISGND-G 799 + R + L ++ + + V S T + G+ + + NG+ ++ I G Sbjct: 773 QADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAP 832 Query: 800 GVGLGAIQSKIIEEFNNLNPPSTVSYSWGGQTENMQKTMSQLSFALSISIFLIYALLASQ 859 G G + + + L P+ + Y W G + + + +Q ++IS +++ LA+ Sbjct: 833 GTSSGDAMALMENLASKL--PAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAAL 890 Query: 860 FESFIMPIIIIGSIPLALIGVIWGLVILRQPIDIMVMIGVILLAGVVVNNAIVLIDFIK- 918 +ES+ +P+ ++ +PL ++GV+ + Q D+ M+G++ G+ NAI++++F K Sbjct: 891 YESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKD 950 Query: 919 TMRTRGYDKDYSIIYSCETRLRPILMTTMTTVFGMIPMALGLGEGSEFYRGMAITVIFGL 978 M G + + + RLRPILMT++ + G++P+A+ G GS + I V+ G+ Sbjct: 951 LMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGM 1010 Query: 979 SFSTILTLVLIPILYSIVDSF 999 +T+L + +P+ + ++ Sbjct: 1011 VSATLLAIFFVPVFFVVIRRC 1031
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 36.5 bits (84), Expect = 1e-05 Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 8/118 (6%) Query: 10 KSFKDIDVNVDELCKRIKKNKQYQLFIKYSENIPVAYLGILYMSNLHYDGAWIDLVAVVE 69 K ++D D++V + + + F+ Y EN + + I N A I+ +AV + Sbjct: 48 KQYEDDDMDVSYV-----EEEGKAAFLYYLENNCIGRIKIRSNWN---GYALIEDIAVAK 99 Query: 70 EHRNKGIGKELLKFAENMVKEKKGTVLTGLVRKDNVSSSTMFLNSNFESSEKDFILYS 127 ++R KG+G LL A KE L + N+S+ + +F D +LYS Sbjct: 100 DYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFIIGAVDTMLYS 157
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 74.3 bits (182), Expect = 2e-16 Identities = 39/178 (21%), Positives = 75/178 (42%), Gaps = 10/178 (5%) Query: 81 SVCRISIRDSRGVVVGYGTGFLVAPNIILTNNHVINS-YEVASNSIAEFNYQDDENFMPC 139 V I + G + +G +V + +LTN HV+++ + A + + +N Sbjct: 89 PVTYIQVEAPTGTFIA--SGVVVGKDTLLTNKHVVDATHGDPHALKAFPSAINQDN---- 142 Query: 140 PTYNFRLNPQTFFITNVKLDFTLVALNENVTNQKHLEDFGYLKMTQKEGTILPEEYVSII 199 N + + + D +V + N N+ E M+ + +++ Sbjct: 143 -YPNGGFTAEQITKYSGEGDLAIVKFSPNEQNKHIGEVVKPATMSN-NAETQVNQNITVT 200 Query: 200 QHPKGGPKSVTLR-ENKVSGLKENFIHYLTDTEPGSSGSPVFNDQWTLVALHHSGVPN 256 +P P + + K++ LK + Y T G+SGSPVFN++ ++ +H GVPN Sbjct: 201 GYPGDKPVATMWESKGKITYLKGEAMQYDLSTTGGNSGSPVFNEKNEVIGIHWGGVPN 258