PredictBias

		>PF06291#Lambda prophage Bor protein

		          Length = 102

		

		 Score = 28.9 bits (64), Expect = 0.017

		 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 7/72 (9%)

		

		Query: 3  NPMKRIINALMLAMLATGCSDPNPTQTNQTAEQAKAEKAVQVLNLKQQLAPITQRYFALR 62

		          N MK+++ +  LAML TGC+     QT     +  A    + +     ++ I Q+     

		Sbjct: 4  NKMKKMLFSAALAMLITGCA----QQTFTVGNKPTAVTPKETITHHFFVSGIGQKKTVDA 59

		

		Query: 63 PEIATYYGVAEN 74

		           +I    G AEN

		Sbjct: 60 AKIC---GGAEN 68

		

		

		>TOXICSSTOXIN#Staphylococcal toxic shock syndrome toxin signature.

		          Length = 234

		

		 Score = 28.8 bits (64), Expect = 0.018

		 Identities = 12/30 (40%), Positives = 16/30 (53%)

		

		Query: 205 LRKLLKQTYDLPKSHFYTSSYWKIGCNEGE 234

		           +R  L Q + L +S   T  YWKI  N+G 

		Sbjct: 173 IRHQLTQIHGLYRSSDKTGGYWKITMNDGS 202

		

		

		>UREASE#Urea amidohydrolase (urease) protein signature.

		          Length = 570

		

		 Score = 43.6 bits (103), Expect = 1e-06

		 Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 8/56 (14%)

		

		Query: 348 LAGLTLNAAKALGIEENVGSLVVGKQADFCLWDIATPAQLAYSYGVNPCKDVVKNG 403

		           +A  T+N A A G+   +GSL VGK+AD  LW+   PA     +GV P   V+  G

		Sbjct: 406 IAKYTINPAIAHGLSHEIGSLEVGKRADLVLWN---PAF----FGVKP-DMVLLGG 453

		

		

		

		 Score = 31.6 bits (72), Expect = 0.007

		 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 6/61 (9%)

		

		Query: 23  YGAITNAAIAVKDGKIAWLGPRSE---LPAFDVL---SIPVYRGKGGWITPGLIDAHTHL 76

		           +  I  A I +KDG+IA +G        P   ++      V  G+G  +T G +D+H H 

		Sbjct: 80  HWGIVKADIGLKDGRIAAIGKAGNPDMQPGVTIIVGPGTEVIAGEGKIVTAGGMDSHIHF 139

		

		Query: 77  V 77

		           +

		Sbjct: 140 I 140

		

		

		>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family

		           signature.

		          Length = 639

		

		 Score = 50.2 bits (120), Expect = 2e-08

		 Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 16/101 (15%)

		

		Query: 8   HVDHGKSTLIRALT---------------GMNTDRLPEEKRRGMTIDLGYAFMPLQDGTR 52

		           HVD GK+TL  +L                   TD    E++RG+TI  G       + T+

		Sbjct: 11  HVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW-ENTK 69

		

		Query: 53  LAFIDVPGHEKFINNMLVGVSHVRHALLVLACDDGVMPQTR 93

		           +  ID PGH  F+  +   +S +  A+L+++  DGV  QTR

		Sbjct: 70  VNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTR 110

		

		

		>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family

		           signature.

		          Length = 639

		

		 Score = 83.0 bits (205), Expect = 2e-19

		 Identities = 55/199 (27%), Positives = 92/199 (46%), Gaps = 5/199 (2%)

		

		Query: 13  VNVGTIGHVDHGKTTLTAAI--SHVLAKTYGGEAKDFSQIDNAPEERERGITINTSHIEY 70

		           +N+G + HVD GKTTLT ++  +       G   K  ++ DN   ER+RGITI T    +

		Sbjct: 4   INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSF 63

		

		Query: 71  DTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVASTDGPMPQTREHILLSRQVGVPF 130

		                    +D PGH D++  +    + +DGAIL++++ DG   QTR      R++G+P 

		Sbjct: 64  QWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIP- 122

		

		Query: 131 IIVFMNKCDMVDDAELLELVEMEVRELLSEYDFPGDDLPVIQGSALKALEGEPEWEAKII 190

		            I F+NK D       L  V  +++E LS        + +     +       +W+  I 

		Sbjct: 123 TIFFINKIDQN--GIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIE 180

		

		Query: 191 ELAEALDSYIPEPERDIDK 209

		              + L+ Y+     +  +

		Sbjct: 181 GNDDLLEKYMSGKSLEALE 199

		

		

		>SECETRNLCASE#Bacterial translocase SecE signature.

		          Length = 127

		

		 Score =  118 bits (297), Expect = 8e-38

		 Identities = 63/125 (50%), Positives = 90/125 (72%), Gaps = 2/125 (1%)

		

		Query: 1   MTTNTENQ--TNSLDIVKWGLAILLLAAAVIGNQMYSETSAVIRALAVIVAFAIAGFIAL 58

		           M+ NTE Q     L+ +KW + + LL  A++GN +Y +    +RALAV++  A AG +AL

		Sbjct: 1   MSANTEAQGSGRGLEAMKWVVVVALLLVAIVGNYLYRDIMLPLRALAVVILIAAAGGVAL 60

		

		Query: 59  QTEKGKKALAFARESQIEVRKVVWPTRQEALNTTFIVLAATGILALVLWGLDAVLMHIVN 118

		            T KGK  +AFARE++ EVRKV+WPTRQE L+TT IV A T +++L+LWGLD +L+ +V+

		Sbjct: 61  LTTKGKATVAFAREARTEVRKVIWPTRQETLHTTLIVAAVTAVMSLILWGLDGILVRLVS 120

		

		Query: 119 FITGV 123

		           FITG+

		Sbjct: 121 FITGL 125

		

		

		>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family

		           signature.

		          Length = 639

		

		 Score =  602 bits (1554), Expect = 0.0

		 Identities = 172/680 (25%), Positives = 295/680 (43%), Gaps = 71/680 (10%)

		

		Query: 9   RYRNIGICAHVDAGKTTTTERVLFYTGLSHKIGEVHDGAATTDWMVQEQERGITITSAAV 68

		           +  NIG+ AHVDAGKTT TE +L+ +G   ++G V  G   TD  + E++RGITI +   

		Sbjct: 2   KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61

		

		Query: 69  TTFWRGMDAQFTEHRINIIDTPGHVDFTIEVERSLRVLDGAVVVFCGSSGVEPQSETVWR 128

		           +  W          ++NIIDTPGH+DF  EV RSL VLDGA+++     GV+ Q+  ++ 

		Sbjct: 62  SFQWEN-------TKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFH 114

		

		Query: 129 QADKYRVPRLVFVNKMDRAGADFERVVKQIRTRLGATCVPIQLNIGAEENFTGVIDLIKM 188

		              K  +P + F+NK+D+ G D   V + I+ +L A  V  Q           V     M

		Sbjct: 115 ALRKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQ----------KVELYPNM 164

		

		Query: 189 KAINWNEADQGMTFTYEEIPASLAAKAAEMHEYLVEAAAEASDELMDKYLEEGTLSEDEI 248

		              N+ E++Q                         +   E +D+L++KY+   +L   E+

		Sbjct: 165 CVTNFTESEQ------------------------WDTVIEGNDDLLEKYMSGKSLEALEL 200

		

		Query: 249 KKALRQRTINNEIVLATCGSAFKNKGVQAVLDAVVEFLPAPVDVPPIKGIDDDEQEVERP 308

		           ++    R  N  +     GSA  N G+  +++ +     +                    

		Sbjct: 201 EQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSSTH----------------- 243

		

		Query: 309 SDDNAPFAALAFKIATDPFVGTLTFIRVYSGVLESGSGVYNSVKQKRERIGRIVQMHAND 368

		               +      FKI        L +IR+YSGVL     V  S K+K  +I  +      +

		Sbjct: 244 -RGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEK-IKITEMYTSINGE 301

		

		Query: 369 RTELKEVRAGDIAAAIG--LK-EVTTGDTLCDPDHKVILERMEFPEPVITIAVEPKSKAD 425

		             ++ +  +G+I       LK     GDT   P      ER+E P P++   VEP     

		Sbjct: 302 LCKIDKAYSGEIVILQNEFLKLNSVLGDTKLLPQR----ERIENPLPLLQTTVEPSKPQQ 357

		

		Query: 426 QDKMGIALQKLAAEDPSFRVETDEESSQTLISGMGELHLDIIVDRMRREFGVECNVGKPQ 485

		           ++ +  AL +++  DP  R   D  + + ++S +G++ +++    ++ ++ VE  + +P 

		Sbjct: 358 REMLLDALLEISDSDPLLRYYVDSATHEIILSFLGKVQMEVTCALLQEKYHVEIEIKEPT 417

		

		Query: 486 VAYRETIRASVEAEGKFVRQSGGRGQFGHVWLKLEPNEEGAGYEFINAIVGGVVPREFIP 545

		           V Y E  R   +AE     +      +  + L + P   G+G ++ +++  G + + F  

		Sbjct: 418 VIYME--RPLKKAEYTIHIEVPPNPFWASIGLSVSPLPLGSGMQYESSVSLGYLNQSFQN 475

		

		Query: 546 AVDKGIQEQMKNGVLAGFPVLDVKVTLFDGSYHDVDSNEMAFKIAGSMGFKKGALEANPV 605

		           AV +GI+   + G L G+ V D K+    G Y+   S    F++   +  ++   +A   

		Sbjct: 476 AVMEGIRYGCEQG-LYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQVLKKAGTE 534

		

		Query: 606 LLEPCMKVEVTTPENYMGDVVGDLNRRRGLIEGMDDGFGGIKIVHAVVPLSEMFGYATDL 665

		           LLEP +  ++  P+ Y+     D  +    I           I+   +P   +  Y +DL

		Sbjct: 535 LLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQLK-NNEVILSGEIPARCIQEYRSDL 593

		

		Query: 666 RSATQGRASYSMEFLKYSDA 685

		              T GR+    E   Y   

		Sbjct: 594 TFFTNGRSVCLTELKGYHVT 613

		

		

		>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family

		           signature.

		          Length = 639

		

		 Score = 83.0 bits (205), Expect = 3e-19

		 Identities = 55/199 (27%), Positives = 92/199 (46%), Gaps = 5/199 (2%)

		

		Query: 13  VNVGTIGHVDHGKTTLTAAI--SHVLAKTYGGEAKDFSQIDNAPEERERGITINTSHIEY 70

		           +N+G + HVD GKTTLT ++  +       G   K  ++ DN   ER+RGITI T    +

		Sbjct: 4   INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSF 63

		

		Query: 71  DTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVASTDGPMPQTREHILLSRQVGVPF 130

		                    +D PGH D++  +    + +DGAIL++++ DG   QTR      R++G+P 

		Sbjct: 64  QWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIP- 122

		

		Query: 131 IIVFMNKCDMVDDAELLELVEMEVRELLSEYDFPGDDLPVIQGSALKALEGEPEWEAKII 190

		            I F+NK D       L  V  +++E LS        + +     +       +W+  I 

		Sbjct: 123 TIFFINKIDQN--GIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIE 180

		

		Query: 191 ELAEALDSYIPEPERDIDK 209

		              + L+ Y+     +  +

		Sbjct: 181 GNDDLLEKYMSGKSLEALE 199

		

		

		>PF06872#EspG protein

		          Length = 398

		

		 Score = 26.6 bits (58), Expect = 0.018

		 Identities = 11/30 (36%), Positives = 17/30 (56%)

		

		Query: 75  PVTGKADRVGFRFEDGKKVRFFKSNSELVK 104

		           P   +  RV  +F DG  +R   +NSEL++

		Sbjct: 87  PAHNELGRVYAKFSDGSSLRISVTNSELIE 116

		

		

		>SECYTRNLCASE#Preprotein translocase SecY subunit signature.

		          Length = 437

		

		 Score =  464 bits (1196), Expect = e-164

		 Identities = 180/428 (42%), Positives = 258/428 (60%), Gaps = 14/428 (3%)

		

		Query: 16  SELKARLLFVIGAIIVFRAGSFVPIPGIDAAVLAELFAQQKGT--ILGMFNMFSGGALSR 73

		            +L+ +LLF +  I+V+R G+ +PIPG+D   + +   +  G   + G+ NMFSGGAL +

		Sbjct: 12  PDLRKKLLFTLAIIVVYRVGTHIPIPGVDYKNVQQCVREASGNQGLFGLVNMFSGGALLQ 71

		

		Query: 74  ASIFALGIMPYISASIIMQLLTVVHPALAELKKEGESGRKKISQYTRWGTLVLGTFQSIG 133

		            +IFALGIMPYI+ASII+QLLTVV P L  LKKEG++G  KI+QYTR+ T+ L   Q  G

		Sbjct: 72  ITIFALGIMPYITASIILQLLTVVIPRLEALKKEGQAGTAKITQYTRYLTVALAILQGTG 131

		

		Query: 134 IATGLPN--------LVPGLVVNIGFGFYFVAVVSLVTGTMFLMWLGEQITERGIGNGIS 185

		           +     +        +   +V +         V+ +  GT  +MWLGE IT+RGIGNG+S

		Sbjct: 132 LVATARSAPLFGRCSVGGQIVPDQSIFTTITMVICMTAGTCVVMWLGELITDRGIGNGMS 191

		

		Query: 186 ILIFAGIVAGLPSAIGQTAEQARQGDLNVLVLLLLAVIIFAVTYFVVFVERGQRRIVVNY 245

		           IL+F  I A  PSA+    +Q       +    ++AV +  +   VVFVE+ QRRI V Y

		Sbjct: 192 ILMFISIAATFPSALWAIKKQGTLAGGWIEFGTVIAVGLI-MVALVVFVEQAQRRIPVQY 250

		

		Query: 246 AKRQQGRKVFAAQSTHLPLKINMAGVIPPIFASSIILFPGTLAQWFGQNESMSWLSDFSL 305

		           AKR  GR+ +   ST++PLK+N AGVIP IFASS++  P  +AQ+ G N       + +L

		Sbjct: 251 AKRMIGRRSYGGTSTYIPLKVNQAGVIPVIFASSLLYIPALVAQFAGGNSGWKSWVEQNL 310

		

		Query: 306 AVSPGQPLYSLLYAAAIIFFCFFYTALVFNPRETADNLKKSGAFIPGIRPGEQTSRYIDK 365

		                 P+Y + Y   I+FF FFY A+ FNP E ADN+KK G FIPGIR G  T+ Y+  

		Sbjct: 311 T-KGDHPIYIVTYFLLIVFFAFFYVAISFNPEEVADNMKKYGGFIPGIRAGRPTAEYLSY 369

		

		Query: 366 VMTRLTLAGALYITFICLIPEFMLIAWKV--QFYFGGTSLLIMVVVIMDFMAQVQTHMMS 423

		           V+ R+T  G+LY+  I L+P   L+ +     F FGGTS+LI+V V ++ + Q+++ +  

		Sbjct: 370 VLNRITWPGSLYLGLIALVPTMALVGFGASQNFPFGGTSILIIVGVGLETVKQIESQLQQ 429

		

		Query: 424 HQYESVMK 431

		             YE  ++

		Sbjct: 430 RNYEGFLR 437

		

		

		>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature.

		          Length = 331

		

		 Score = 52.1 bits (125), Expect = 1e-09

		 Identities = 56/323 (17%), Positives = 117/323 (36%), Gaps = 40/323 (12%)

		

		Query: 48  LSLYGSVRPTLVYSDSSLTDD---------WDVGDALSRIGIKGKTEFAPGWALLAQGEW 98

		           ++LYG+++  +  S S   +            + D  S+IG KG+ +   G   + Q E 

		Sbjct: 21  VTLYGTIKAGVETSRSVAHNGAQAASVETGTGIVDLGSKIGFKGQEDLGNGLKAIWQVEQ 80

		

		Query: 99  KINLNGDGSFGDARLAFAGVSSPWGQFTLGRQRPVQYSLVAEYTDIFNNANSPFAYNQES 158

		           K ++ G  S    R +F G+   +G+  +GR      S++ +  DI N  +S   Y   +

		Sbjct: 81  KASIAGTDSGWGNRQSFIGLKGGFGKLRVGR----LNSVLKDTGDI-NPWDSKSDYLGVN 135

		

		Query: 159 PFFTDNLALYQAKI---GYFTLMGAAQF--KSEEANSGADMLNAGIGFDWQQLHLGLSYL 213

		                   L   +     +  L G+ Q+          ++  +AG  +      +     

		Sbjct: 136 KIAEPEARLISVRYDSPEFAGLSGSVQYALNDNAGRHNSESYHAGFNYKNGGFFVQYGGA 195

		

		Query: 214 EQDTFESNLNTGKENTTGFAMAYSF-TNGVYLAVAYQYKDYQL--------NQGEDREGY 264

		            +   +   N   E      +   +  + +Y +VA Q +D +L        +Q E     

		Sbjct: 196 YKRHHQVQENVNIEKYQIHRLVSGYDNDALYASVAVQQQDAKLVEENYSHNSQTEVAATL 255

		

		Query: 265 SLDSALALPLGPDYKLKLGYFQ-FD---DGVSDPSSLNYQGVNTTIEWSPTPNVRLHAEY 320

		           +       P       ++ Y   F    D  +  +  +   V    ++S   +  + A +

		Sbjct: 256 AYRFGNVTP-------RVSYAHGFKGSFDATNYNNDYDQVVVGAEYDFSKRTSALVSAGW 308

		

		Query: 321 LYQDND-NRDTDNSIAIGVRYDF 342

		           L +    ++    +  +G+R+ F

		Sbjct: 309 LQEGKGESKFVSTAGGVGLRHKF 331

		

		

		>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase

		           signature.

		          Length = 572

		

		 Score = 28.2 bits (63), Expect = 0.047

		 Identities = 22/96 (22%), Positives = 43/96 (44%), Gaps = 22/96 (22%)

		

		Query: 70  RPAVQLTQEGLDAISELQQTPKGNLRISVPMVFGRLYIAPLIAEFLKRYPDIQLQMQMDD 129

		           +  +  TQ  L A+  L+ +  GNL++  PM+         + E        Q +  M +

		Sbjct: 367 KQDIFRTQ--LRAL--LRASTYGNLKVMFPMI-------ATLEEL------RQAKAIMQE 409

		

		Query: 130 KTTDLIAGGFDLA--IRIG---ELPDSSLIARKIAP 160

		           +   L++ G D++  I +G   E+P +++ A   A 

		Sbjct: 410 EKDKLLSEGVDVSDSIEVGIMVEIPSTAVAANLFAK 445

		

		

		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

		           signature.

		          Length = 478

		

		 Score = 39.8 bits (93), Expect = 1e-05

		 Identities = 45/221 (20%), Positives = 81/221 (36%), Gaps = 36/221 (16%)

		

		Query: 109 AQIHELEKQLSQLELNNLSLNAEILTQLQQRIDVAAEGVTRQNGLLDSFERYQRKGVVPT 168

		            Q    + Q  Q ELN     AE LT L +           ++  LD F     K  +  

		Sbjct: 193 EQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSR-LDDFSSLLHKQAIAK 251

		

		Query: 169 ----------ADMAAVLQAHTASKMALE----QAKVDLMQARQAQKTELLAGPIAQSKYN 214

		                      +    L+ + +    +E     AK +     Q  K E+L   + Q+  N

		Sbjct: 252 HAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEIL-DKLRQTTDN 310

		

		Query: 215 ---VELQLARLKAQESQLDIKALTPTRVVDV-------LVQAGEHIVEDRPLVLLSGREA 264

		              + L+LA+ + ++    I+A    +V  +       +V   E ++   P       + 

		Sbjct: 311 IGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPE-----DDT 365

		

		Query: 265 AVIFAYLEPKYLEYTAIGQEATIKLP--NGTR---LRGEIS 300

		             + A ++ K + +  +GQ A IK+     TR   L G++ 

		Sbjct: 366 LEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVK 406

		

		

		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

		          Length = 334

		

		 Score = 69.8 bits (171), Expect = 9e-16

		 Identities = 53/234 (22%), Positives = 88/234 (37%), Gaps = 31/234 (13%)

		

		Query: 3   NIMVTGATGLLGRAVVKQLTAAGHRVIA---------TGFSRAEAGI--------HRLDL 45

		             +VTGA G +G  V K+L  AGH+V+              +A   +        H++DL

		Sbjct: 2   KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61

		

		Query: 46  TQAAEVEAFIAREQPEVIVHCAAERRPDVSERSPEHALALNLSASQTLAEVAKTHQ-AWL 104

		                +    A    E +           S  +P      NL+    + E  + ++   L

		Sbjct: 62  ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121

		

		Query: 105 LYISTDYVF-DGTTPPYAEDAEPN-PVNFYGASKLQGETCVLSTDNGFAV----LRLPIL 158

		           LY S+  V+      P++ D   + PV+ Y A+K   E    +  + + +    LR   +

		Sbjct: 122 LYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFFTV 181

		

		Query: 159 YGEVTQLNESAVLVLINQLLDGRPQRV----DHWAIRAPTSTADIANAIAKLIQ 208

		           YG      + A+      +L+G+   V         R  T   DIA AI +L  

		Sbjct: 182 YGP-WGRPDMALFKFTKAMLEGKSIDVYNYGKMK--RDFTYIDDIAEAIIRLQD 232

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 86.8 bits (215), Expect = 2e-22

		 Identities = 26/110 (23%), Positives = 57/110 (51%)

		

		Query: 3   RLLIIEDDQALAGVLARRLTRHGFECRLSHDASNALLVAREFCPTHILLDMKLAEANGLG 62

		            +L+ +DD A+  VL + L+R G++ R++ +A+             ++ D+ + + N   

		Sbjct: 5   TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64

		

		Query: 63  LIVPLRNLLPKVIMVLLTGYASIATAVEAIRLGADNYLAKPVDTQTLLAA 112

		           L+  ++   P + +++++   +  TA++A   GA +YL KP D   L+  

		Sbjct: 65  LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGI 114

		

		

		

		 Score = 48.3 bits (115), Expect = 3e-09

		 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

		

		Query: 116 NSQASALPEDEIDDSPLTPKRLEWEHIQQVLNANQGNVSATARQLGMHRRTLQRKLLK 173

		            S   ALP   + D  L    +E+  I   L A +GN    A  LG++R TL++K+ +

		Sbjct: 417 ASFGDALPPSGLYDRVL--AEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRE 472

		

		

		>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase

		           signature.

		          Length = 261

		

		 Score = 43.1 bits (101), Expect = 3e-07

		 Identities = 37/195 (18%), Positives = 74/195 (37%), Gaps = 29/195 (14%)

		

		Query: 55  LEEEIKQLSQNIPQLDWLINCIGMLHTEDKGPEKSLQALDGDFLQHNIQLNTLPSMMLAK 114

		           ++E   ++ + +  +D L+N  G+L     G   SL   +    +    +N+      ++

		Sbjct: 72  IDEITARIEREMGPIDILVNVAGVLRP---GLIHSLSDEE---WEATFSVNSTGVFNASR 125

		

		Query: 115 HFETALKRSVSVRFAVVSAKVGSISDNRLGGWYSYRASKAALNMFLKTLSIEWQRSMKHC 174

		                +    S     V +    +    +    +Y +SKAA  MF K L +E       C

		Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMA---AYASSKAAAVMFTKCLGLELAEYNIRC 182

		

		Query: 175 VVLALHPGTTDTRLSKP------------------FQQNVPKEKLFTPEYVAQCLVSIIA 216

		            +++  PG+T+T +                     F+  +P +KL  P  +A  ++ +++

		Sbjct: 183 NIVS--PGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVS 240

		

		Query: 217 NATPAQTGSFLAYDG 231

		                 T   L  DG

		Sbjct: 241 GQAGHITMHNLCVDG 255

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 30.6 bits (69), Expect = 0.015

		 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 3/36 (8%)

		

		Query: 49  TPKNILMIGPTGVGKTEIAR---RLAKLANAPFIKV 81

		           T   +++ G +G GK  +AR      K  N PF+ +

		Sbjct: 159 TDLTLMITGESGTGKELVARALHDYGKRRNGPFVAI 194

		

		

		>BCTERIALGSPG#Bacterial general secretion pathway protein G

		          signature.

		          Length = 145

		

		 Score = 48.0 bits (114), Expect = 2e-09

		 Identities = 18/59 (30%), Positives = 33/59 (55%)

		

		Query: 1  MSRLHTSKGFTLIELVVVIIILGILAVVAAPRFINLSQDAHDARAKAAFAAFTSGVKLY 59

		          M      +GFTL+E++VVI+I+G+LA +  P  +   + A   +A +   A  + + +Y

		Sbjct: 1  MRATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMY 59

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 83.7 bits (207), Expect = 3e-21

		 Identities = 28/125 (22%), Positives = 51/125 (40%)

		

		Query: 7   LYLVDDDEAILDSLGFMLGQFGYQVQTFNSGRNFLAQCPLTQAGCVILDSRMPEITGQEV 66

		           + + DDD AI   L   L + GY V+  ++               V+ D  MP+    ++

		Sbjct: 6   ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65

		

		Query: 67  QQKLLETQSPLGVIFLTGHGDLPMALSAFRKGACDFFQKPVSGKALVQAIEKAHRESQAN 126

		             ++ + +  L V+ ++       A+ A  KGA D+  KP     L+  I +A  E +  

		Sbjct: 66  LPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKRR 125

		

		Query: 127 FEQQS 131

		             +  

		Sbjct: 126 PSKLE 130

		

		

		>INTIMIN#Intimin signature.

		          Length = 939

		

		 Score = 31.6 bits (71), Expect = 0.027

		 Identities = 41/175 (23%), Positives = 67/175 (38%), Gaps = 18/175 (10%)

		

		Query: 1038 YDPNGQFNDLVKGETANEVFSYTITDEIGAT--STTEVTISVVGINAAP-VAVADTAVTT 1094

		            YD   + N+++      ++ S  I  +I  T  ST ++ + V        +   D+A+ +

		Sbjct: 435  YDLVQRNNNIILEYKKQDILSLNIPHDINGTERSTQKIQLIVKSKYGLDRIVWDDSALRS 494

		

		Query: 1095 KSGSIQIDLLANDTD------------ADGDTLTITAIDVGSLKGKVTNNNDGTVTYSPN 1142

		            + G IQ     +  D            ++   +T  A D     G  +NN   T+T   N

		Sbjct: 495  QGGQIQHSGSQSAQDYQAILPAYVQGGSNVYKVTARAYDR---NGNSSNNVLLTITVLSN 551

		

		Query: 1143 GQFGHLYQGQSATETFTYTISDGDAEMTASVTVTINGEGQAPVEPEKEGSSGGSL 1197

		            GQ          T   T   +DG   +T + TV  NG  QA V       SG ++

		Sbjct: 552  GQVVDQVGVTDFTADKTSAKADGTEAITYTATVKKNGVAQANVPVSFNIVSGTAV 606

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 32.9 bits (75), Expect = 0.002

		 Identities = 37/145 (25%), Positives = 62/145 (42%), Gaps = 17/145 (11%)

		

		Query: 30  RTVIRSLILGLLCSGHVLLEGLPGTAKTRSVKAL------ANALAISFGRIQFTPDLLPS 83

		           + + R L   +     +++ G  GT K    +AL       N   ++        DL+ S

		Sbjct: 147 QEIYRVLARLMQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIES 206

		

		Query: 84  DVTGTE--VLHEAEGKSTLRFQP---GPVFNQIVLADEINRAPAKVQAALLEAMAEGTIT 138

		           ++ G E      A+ +ST RF+    G +F      DEI   P   Q  LL  + +G  T

		Sbjct: 207 ELFGHEKGAFTGAQTRSTGRFEQAEGGTLF-----LDEIGDMPMDAQTRLLRVLQQGEYT 261

		

		Query: 139 -VAGQTHVLPELFMVLATQNPIEQE 162

		            V G+T +  ++ +V AT   ++Q 

		Sbjct: 262 TVGGRTPIRSDVRIVAATNKDLKQS 286

		

		

		>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase

		           signature.

		          Length = 261

		

		 Score = 48.9 bits (116), Expect = 4e-09

		 Identities = 53/257 (20%), Positives = 98/257 (38%), Gaps = 31/257 (12%)

		

		Query: 5   IIITGVGKRIGYALAKHLLAQGHKVIG-----TYRSHYPSIDELQSLGATLIQCDFYDNA 59

		             ITG  + IG A+A+ L +QG  +              S  + ++  A     D  D+A

		Sbjct: 11  AFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDSA 70

		

		Query: 60  RLQTLIEQL-SQYPKIRAIIHNASDWLPDNSPSLAAHEVMQRMMQVHVSVPYQMNLALAS 118

		            +  +  ++  +   I  +++ A    P    SL+  E  +    V+ +  +  + +++ 

		Sbjct: 71  AIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEW-EATFSVNSTGVFNASRSVSK 129

		

		Query: 119 QLRAGAEGEIG--ASDIIHFTDYVAEKGSAKHMAYAASKAALDNLTLSFAAQLAP-GVKV 175

		            +     G I    S+       V     A   AYA+SKAA    T     +LA   ++ 

		Sbjct: 130 YMMDRRSGSIVTVGSNPAG----VPRTSMA---AYASSKAAAVMFTKCLGLELAEYNIRC 182

		

		Query: 176 NAIAPAMI-------LFNPSDDEAYRQKTLAKAI-----LPKEAGNQEIIALVDYLLASR 223

		           N ++P          L+   +      K   +       L K A   +I   V +L++ +

		Sbjct: 183 NIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQ 242

		

		Query: 224 --YVTGRSHNVDGGRHL 238

		             ++T  +  VDGG  L

		Sbjct: 243 AGHITMHNLCVDGGATL 259

		

		

		>2FE2SRDCTASE#Ferric iron reductase signature.

		          Length = 262

		

		 Score = 28.1 bits (62), Expect = 0.019

		 Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 9/73 (12%)

		

		Query: 73  FQDSVARLSDFEFGFMPLLPEEEEPLSQRVEALSLWTQSFLTGIAIIQPKLNKASAEVRE 132

		               +A  SD  +   P++  E +PL      +SLW Q +   I ++ P L  A     +

		Sbjct: 66  LSSLLAVYSDHIYRNQPMMIRENKPL------ISLWAQWY---IGLMVPPLMLALLTQEK 116

		

		Query: 133 VIKDLAEIAQVEF 145

		            +    E    EF

		Sbjct: 117 ALDVSPEHFHAEF 129

		

		

		>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase

		           signature.

		          Length = 261

		

		 Score =  117 bits (294), Expect = 1e-33

		 Identities = 76/258 (29%), Positives = 120/258 (46%), Gaps = 6/258 (2%)

		

		Query: 34  LKGKVGLITGSTSGIGLATAHVLAEQGCHLILHGLMPEAEGQCLAADFAEQYHINTFFSN 93

		           ++GK+  ITG+  GIG A A  LA QG H+      PE   + +++  AE  H   F   

		Sbjct: 6   IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAF--P 63

		

		Query: 94  ADLRDPESIHAFMDAGVNALGSIDILVNNAGIQHTENVAHFPIDKWNDIIAINLSSAFHT 153

		           AD+RD  +I          +G IDILVN AG+     +     ++W    ++N +  F+ 

		Sbjct: 64  ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123

		

		Query: 154 IQQVVPAMAEKRWGRIINIASVHGLVASVNKAAYCAAKHGIVGLTKVVAIECAEQGITVN 213

		            + V   M ++R G I+ + S    V   + AAY ++K   V  TK + +E AE  I  N

		Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCN 183

		

		Query: 214 AICPGWVDTPLINK-QIEAIASNKGLSYDEAKYQLVTAKQPLPEMLDPRQIGEFVLFLCS 272

		            + PG  +T +      +   + + +      ++      PL ++  P  I + VLFL S

		Sbjct: 184 IVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGI---PLKKLAKPSDIADAVLFLVS 240

		

		Query: 273 SAARGITGASLAMDGAWT 290

		             A  IT  +L +DG  T

		Sbjct: 241 GQAGHITMHNLCVDGGAT 258

		

		

		>TCRTETB#Tetracycline resistance protein TetB signature.

		          Length = 458

		

		 Score = 29.8 bits (67), Expect = 0.022

		 Identities = 26/107 (24%), Positives = 40/107 (37%), Gaps = 4/107 (3%)

		

		Query: 252 GIVGTIAGILYSRKQPLRLPIIRLSGLLIFLTVLGLSFGSAPWLQTLCAI-VLGFCIFLP 310

		            I G I GIL  R+ PL +  I ++ L +          +  W  T+  + VLG   F  

		Sbjct: 307 IIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFTK 366

		

		Query: 311 VTALVSIPHELPKMTSQKITVIFSLFWSISYLISTLVLWLFGKLVDI 357

		                 +   L     Q+     SL    S+L     + + G L+ I

		Sbjct: 367 TVISTIVSSSL---KQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSI 410

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 39.0 bits (91), Expect = 9e-05

		 Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 6/89 (6%)

		

		Query: 1052 ISVLVIDNDELMLKAISSLLLGWGCHVLTARDKACAELQLAQQVLPKLIIADYHLDDDQN 1111

		             ++LV D+D  +   ++  L   G  V    + A    +        L++ D  + D+ N

		Sbjct: 4    ATILVADDDAAIRTVLNQALSRAGYDVRITSN-AATLWRWIAAGDGDLVVTDVVMPDE-N 61

		

		Query: 1112 GVDLVQSLLTHPVFSRQRPTCIICSADPS 1140

		              DL+  +       R     ++ SA  +

		Sbjct: 62   AFDLLPRIKKA----RPDLPVLVMSAQNT 86

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 65.6 bits (160), Expect = 1e-14

		 Identities = 41/167 (24%), Positives = 68/167 (40%), Gaps = 8/167 (4%)

		

		Query: 1   MSQIKVAIADDHPLFRTALTQAVLKNVNTADVLEAENFQELISIVENNPDIELIFLDLHM 60

		           M+   + +ADD    RT L QA L      DV    N   L   +      +L+  D+ M

		Sbjct: 1   MTGATILVADDDAAIRTVLNQA-LSRAG-YDVRITSNAATLWRWIAAGD-GDLVVTDVVM 57

		

		Query: 61  PGNEGFTGLTLLQNHFPDIAVIMVSSDDQPEIIRKAINFGASAFIPKSASLTQISTAIAT 120

		           P    F  L  ++   PD+ V+++S+ +      KA   GA  ++PK   LT++   I  

		Sbjct: 58  PDENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117

		

		Query: 121 VLEGEVWLPEHTDINVDQQ-----TAAEHQRLAKQLAQLTPQQYTVL 162

		            L      P   + +          +A  Q + + LA+L     T++

		Sbjct: 118 ALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLM 164

		

		

		>V8PROTEASE#V8 serine protease family signature.

		          Length = 336

		

		 Score = 47.7 bits (113), Expect = 9e-08

		 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

		

		Query: 650 SVPVNFLS-SVDTTGGNSGSPVFNGKGELVGLNFDSTYEAITKDWFFNPTI 699

		            +    +   + TTGGNSGSPVFN K E++G+++           F N  +

		Sbjct: 220 YLKGEAMQYDLSTTGGNSGSPVFNEKNEVIGIHWGGVPNEFNGAVFINENV 270

		

		

		>ALARACEMASE#Alanine racemase signature.

		          Length = 356

		

		 Score =  431 bits (1110), Expect = e-154

		 Identities = 155/350 (44%), Positives = 214/350 (61%), Gaps = 6/350 (1%)

		

		Query: 6   RAEISSSALQNNLAVLRQQASRSQVMAVVKANGYGHGLLNVANCLHTADGFGLARLEEAL 65

		           +A +   AL+ NL+++RQ A+ ++V +VVKAN YGHG+  + + +   DGF L  LEEA+

		Sbjct: 6   QASLDLQALKQNLSIVRQAATHARVWSVVKANAYGHGIERIWSAIGATDGFALLNLEEAI 65

		

		Query: 66  ELRAGGVKARLLLLEGFFRSTDLPLLVAHDIDTVVHHESQIEMLEQATLSKPVTVWLKVD 125

		            LR  G K  +L+LEGFF + DL +   H + T VH   Q++ L+ A L  P+ ++LKV+

		Sbjct: 66  TLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNARLKAPLDIYLKVN 125

		

		Query: 126 SGMHRLGVTPEQFAQVYARLTACDNVAKPIHLMTHFACADEPENNYTQVQMQTFNQLTAD 185

		           SGM+RLG  P++   V+ +L A  NV   + LM+HFA A+ P+       M    Q    

		Sbjct: 126 SGMNRLGFQPDRVLTVWQQLRAMANV-GEMTLMSHFAEAEHPD--GISGAMARIEQAAEG 182

		

		Query: 186 LPGFRTLANSAGALYWPKSQGDWIRPGIALYGVSPVT--GDCGANHGLIPAMNLVSRLIA 243

		           L   R+L+NSA  L+ P++  DW+RPGI LYG SP     D  AN GL P M L S +I 

		Sbjct: 183 LECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDI-ANTGLRPVMTLSSEIIG 241

		

		Query: 244 VRDHKAGQPVGYGCYWTAKQDTRLGVVAIGYGDGYPRNAPEGTPVWVNGRRVPIVGRVSM 303

		           V+  KAG+ VGYG  +TA+ + R+G+VA GY DGYPR+AP GTPV V+G R   VG VSM

		Sbjct: 242 VQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHAPTGTPVLVDGVRTMTVGTVSM 301

		

		Query: 304 DMLTVDLGADAADQVGDEALLWGAALPVEEVAEHIGTIAYELVTKLTPRV 353

		           DML VDL       +G    LWG  + +++VA   GT+ YEL+  L  RV

		Sbjct: 302 DMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELMCALALRV 351

		

		

		>FIMREGULATRY#Escherichia coli: P pili regulatory PapB protein

		           signature.

		          Length = 104

		

		 Score = 44.2 bits (104), Expect = 5e-09

		 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 1/84 (1%)

		

		Query: 3   TLIQGCETAQQFEILLKLTSISSQAKKDALRAYLVDGLPAKRAYARYGVTQQHFSEALAT 62

		            L+ G  +   F +L+ ++SI S     A++ YLV G   K    +Y +   +FS  L  

		Sbjct: 22  VLLPGSMSEMHFFLLIGISSIHSDRVILAMKDYLVGGHSRKEVCEKYQMNNGYFSTTLGR 81

		

		Query: 63  LNQKADLAMQYAALQKTKAENNFD 86

		           L +   LA + A     ++ + FD

		Sbjct: 82  LIRLNALAARLAPYYTDES-SAFD 104

		

		

		>BCTERIALGSPF#Bacterial general secretion pathway protein F

		           signature.

		          Length = 408

		

		 Score = 25.6 bits (56), Expect = 0.031

		 Identities = 9/20 (45%), Positives = 14/20 (70%)

		

		Query: 8   LLVIIGIVGMLLTVVVPLIA 27

		            +V I +V +LL+VVVP + 

		Sbjct: 180 TVVAIAVVSILLSVVVPKVV 199

		

		

		>OMPADOMAIN#OMPA domain signature.

		          Length = 346

		

		 Score = 81.9 bits (202), Expect = 4e-19

		 Identities = 45/164 (27%), Positives = 73/164 (44%), Gaps = 18/164 (10%)

		

		Query: 104 TNADNQQNSLLISAN---NQAMSKEDQEKYSDYQVVGMAATISSTDEMMFGSGSAEATAQ 160

		           T  DN   SL +S      +A            +V       +   +++F    A    +

		Sbjct: 176 TRPDNGMLSLGVSYRFGQGEAAPVVAPAPAPAPEVQ--TKHFTLKSDVLFNFNKATLKPE 233

		

		Query: 161 AKQKLQKLAAIYKDSK---QNILITGHTDASGSESLNQTLSEARARYVATLFNQAGIPTE 217

		            +  L +L +   +      ++++ G+TD  GS++ NQ LSE RA+ V       GIP +

		Sbjct: 234 GQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSVVDYLISKGIPAD 293

		

		Query: 218 RLFFQGAGESQPVAANTNETGK---------AKNRRVEIVEIEG 252

		           ++  +G GES PV  NT +  K         A +RRVEI E++G

		Sbjct: 294 KISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEI-EVKG 336

		

		

		>ANTHRAXTOXNA#Anthrax toxin LF subunit signature.

		          Length = 800

		

		 Score = 28.9 bits (64), Expect = 0.017

		 Identities = 20/102 (19%), Positives = 41/102 (40%), Gaps = 14/102 (13%)

		

		Query: 48  HFVLASTTEGKALIAESTENYAFNTQKILNASHVV-------VLCTRTQLDEAHLLQVL- 99

		            FV     E   LI  + ++YA N+++     + +       ++     LD    L ++ 

		Sbjct: 140 RFVFEKKRETPKLII-NIKDYAINSEQSKEVYYEIGKGISLDIISKDKSLDP-EFLNLIK 197

		

		Query: 100 ----EQEAKDGRFANDEAKQAQHNGRSFFANMHKNELKDAQH 137

		               + ++ D  F+    ++ + N +S   N  K  L + QH

		Sbjct: 198 SLSDDSDSSDLLFSQKFKEKLELNNKSIDINFIKENLTEFQH 239

		

		

		>LUXSPROTEIN#Bacterial autoinducer-2 (AI-2) production protein LuxS

		           signature.

		          Length = 171

		

		 Score =  273 bits (699), Expect = 1e-97

		 Identities = 131/168 (77%), Positives = 150/168 (89%)

		

		Query: 2   PLLDSFTVDHTRMNAPAVRVAKHMSTPKGDAITVFDLRFCAPNKDILSERGIHTLEHLFA 61

		           PLLDSFTVDHTRMNAPAVRVAK M TPKGD ITVFDLRF APNKDILSE+GIHTLEHL+A

		Sbjct: 1   PLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYA 60

		

		Query: 62  GFMRDHLNGSDVEIIDISPMGCRTGFYMSLIGEPSERQVADAWLASMEDVLKVVEQSEIP 121

		           GFMR+HLNG  VEIIDISPMGCRTGFYMSLIG PSE+QVADAW+A+MEDVLKV  Q++IP

		Sbjct: 61  GFMRNHLNGDSVEIIDISPMGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVENQNKIP 120

		

		Query: 122 ELNEYQCGTYQMHSLEQAQDIARNIIAAGVSVNRNDDLKLSDEILGQL 169

		           ELNEYQCGT  MHSL++A+ IA+NI+  GV+VN+ND+L L + +L +L

		Sbjct: 121 ELNEYQCGTAAMHSLDEAKQIAKNILEVGVAVNKNDELALPESMLREL 168

		

		

		>ECOLIPORIN#E.coli/Salmonella-type porin signature.

		          Length = 383

		

		 Score = 29.9 bits (67), Expect = 0.033

		 Identities = 55/244 (22%), Positives = 87/244 (35%), Gaps = 48/244 (19%)

		

		Query: 417 EHVSINREVKQAFAGLDEADFSDSDWMPQLGVLYDAGDWRFSTDIRRAWTAASAGNT--- 473

		           E    N   + AFAGL   D+   D+    GVLYD   W   TD+   +   S       

		Sbjct: 87  EGEGANSWTRLAFAGLKFGDYGSFDYGRNYGVLYDVEGW---TDMLPEFGGDSYTYADNY 143

		

		Query: 474 -TQEAQVSLHYQVSAQYAREGIKADLRAYVQ-----EFDNLHVDCDSYSMCADERLLTQE 527

		            T  A     Y+ +  +   G+   L   +Q     E  +        +   +   +  +

		Sbjct: 144 MTGRANGVATYRNTDFF---GLVDGLNFALQYQGKNESQSADDVNIGTNNRNNGDDIRYD 200

		

		Query: 528 NIPDVLTYGVELGLGYRWDLGGVELPLGLNYQYLSAEYQTSTCTDVQ----GCVLEGDRL 583

		           N       G   G+   +D+G     +G +     A Y TS  T+ Q    G +  GD+ 

		Sbjct: 201 N-------GDGFGISTTYDIG-----MGFS---AGAAYTTSDRTNEQVNAGGTIAGGDKA 245

		

		Query: 584 -AWLPEHQLQLSAGIKYAQYRLNLEAAYQSERDFSQFGSEQERISGQW-----RVDLAAN 637

		            AW        +AG+KY    + L   Y   R+ + +G   +   G         ++ A 

		Sbjct: 246 DAW--------TAGLKYDANNIYLATMYSETRNMTPYGKTDKGYDGGVANKTQNFEVTAQ 297

		

		Query: 638 YDFD 641

		           Y FD

		Sbjct: 298 YQFD 301

		

		

		>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein

		           signature.

		          Length = 347

		

		 Score =  142 bits (361), Expect = 9e-40

		 Identities = 78/385 (20%), Positives = 144/385 (37%), Gaps = 79/385 (20%)

		

		Query: 5   IGIDLGTTNSCVAVLDGGK-----ARVLENAEGDRTTPSIIAYTDDETIVGQPAKRQAVT 59

		           + IDLGT N+ + V   G      + V    +   +  S+ A       VG  AK+    

		Sbjct: 13  LSIDLGTANTLIYVKGQGIVLNEPSVVAIRQDRAGSPKSVAA-------VGHDAKQMLGR 65

		

		Query: 60  NPNNTFFAIKRLIGRRFKDDEVQRDVNIMPFKIIQADNGDAWVESRGNKMAPPQVSAEIL 119

		            P N   AI+ +           +D  I  F + +                   +    +

		Sbjct: 66  TPGN-IAAIRPM-----------KDGVIADFFVTEK------------------MLQHFI 95

		

		Query: 120 KKMKKTAEDFLGEEVTEAVITVPAYFNDSQRQATKDAGRIAGLEVKRIINEPTAAALAYG 179

		           K++     +         ++ VP      +R+A +++ + AG     +I EP AAA+  G

		Sbjct: 96  KQVHS---NSFMRPSPRVLVCVPVGATQVERRAIRESAQGAGAREVFLIEEPMAAAIGAG 152

		

		Query: 180 IDKKQGDNIVAVYDLGGGTFDISIIEIDSNDGDQTFEVLATNGDTHLGGEDFDNRLINYL 239

		           +   +    + V D+GGGT ++++I ++          +  +    +GG+ FD  +INY+

		Sbjct: 153 LPVSEATGSM-VVDIGGGTTEVAVISLNG---------VVYSSSVRIGGDRFDEAIINYV 202

		

		Query: 240 ADEFKKEQGLDLRKDPLAMQRLKEAAEKAKIELSST----NQTEVNLPYITADATGPKHL 295

		              +    G             +  AE+ K E+ S        E+ +         P+  

		Sbjct: 203 RRNYGSLIG-------------EATAERIKHEIGSAYPGDEVREIEVRGRNLAEGVPRGF 249

		

		Query: 296 VVKITRAKLESLVEDLIIRTLEPLKVALADA--DLSVSDINE--VILVGGQTRMPKVQEA 351

		            +  +   LE+L E  +   +  + VAL     +L+ SDI+E  ++L GG   +  +   

		Sbjct: 250 TLN-SNEILEALQEP-LTGIVSAVMVALEQCPPELA-SDISERGMVLTGGGALLRNLDRL 306

		

		Query: 352 VSNFFGKEPRKDVNPDEAVAVGAAI 376

		           +    G       +P   VA G   

		Sbjct: 307 LMEETGIPVVVAEDPLTCVARGGGK 331

		

		

		>INFPOTNTIATR#Macrophage infectivity potentiator signature.

		          Length = 233

		

		 Score =  155 bits (392), Expect = 2e-49

		 Identities = 77/205 (37%), Positives = 121/205 (59%), Gaps = 9/205 (4%)

		

		Query: 6   STVEQQASYGVGRQMGEQLAANSFEGVDI--AAVQAGLADAFAGVESAVSMQDMQVAFTE 63

		           +T + + SY +G  +G+       +G+DI    +  G+ D  +G +  ++ + M+   ++

		Sbjct: 28  TTDKDKLSYSIGADLGKNFKN---QGIDINPDVLAKGMQDGMSGAQLILTEEQMKDVLSK 84

		

		Query: 64  ISRRIQAAQ----EQAAAAASAEGEAFLAENAKRAGVIVTDSGLQYEVLVQGSGAKPSYE 119

		             + + A +     + A    A+G+AFL+ N  + G++V  SGLQY+++  G+GAKP   

		Sbjct: 85  FQKDLMAKRSAEFNKKAEENKAKGDAFLSANKSKPGIVVLPSGLQYKIIDAGTGAKPGKS 144

		

		Query: 120 DTVRTHYHGSFINGDVFDSSVVRGQPAEFPVSGVIAGWTEALQLMPVGTKLKLFVPHHLA 179

		           DTV   Y G+ I+G VFDS+   G+PA F VS VI GWTEALQLMP G+  ++FVP  LA

		Sbjct: 145 DTVTVEYTGTLIDGTVFDSTEKAGKPATFQVSQVIPGWTEALQLMPAGSTWEVFVPADLA 204

		

		Query: 180 YGERGAGASIPPYSTLVFEVELLDI 204

		           YG R  G  I P  TL+F++ L+ +

		Sbjct: 205 YGPRSVGGPIGPNETLIFKIHLISV 229

		

		

		>PF00577#Outer membrane usher protein FimD

		          Length = 878

		

		 Score = 39.4 bits (92), Expect = 5e-05

		 Identities = 25/180 (13%), Positives = 54/180 (30%), Gaps = 29/180 (16%)

		

		Query: 484 GRLTYRYTASNFGHGWVGQQQSLRADL-WNWKFATVSASFNHSSSSGNNITLSVSGSLG- 541

		             L+Y       G G      +  A L +   +   +  ++HS      +   VSG +  

		Sbjct: 645 NNLSYSVQTGYAGGGDGNSGSTGYATLNYRGGYGNANIGYSHSDDI-KQLYYGVSGGVLA 703

		

		Query: 542 -RTGLLRTPQRSQAQLELSTCKDLNLNGICEPTEPEVESIKATVAGQEVVTP-----AII 595

		              G+      +   + +                P  +  K  V  Q  V       A++

		Sbjct: 704 HANGVTLGQPLNDTVVLVKA--------------PGAKDAK--VENQTGVRTDWRGYAVL 747

		

		Query: 596 GSLTPYQRYTIQVGSSFNLSPSYKAVESTRLI---RGGINKLRLPLTEIREVEGQLDRDG 652

		              T Y+   + + ++  L+ +     +   +   RG I +         ++   L  + 

		Sbjct: 748 PYATEYRENRVALDTN-TLADNVDLDNAVANVVPTRGAIVRAEFKARVGIKLLMTLTHNN 806

		

		

		>adhesinb#Adhesin B signature.

		          Length = 310

		

		 Score = 31.4 bits (71), Expect = 0.003

		 Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 16/95 (16%)

		

		Query: 142 REARRTFEVIAEELDIVIQKNGTMAFDNAIIAY----EPLWAVGTGKSATPEQAQEVHAF 197

		           +EA+  F  I  E  +++   G   F     AY      +W + T +  TP+Q + +   

		Sbjct: 186 KEAKEKFNNIPGEKKMIVTSEG--CFKYFSKAYNVPSAYIWEINTEEEGTPDQIKTLVEK 243

		

		Query: 198 IRKRLSEVSPFIGENIRILYGGSVTPSNAADLFAQ 232

		           +RK            +  L+  S          ++

		Sbjct: 244 LRKT----------KVPSLFVESSVDDRPMKTVSK 268

		

		

		>SECGEXPORT#Protein-export SecG membrane protein signature.

		          Length = 110

		

		 Score =  121 bits (304), Expect = 3e-39

		 Identities = 63/110 (57%), Positives = 83/110 (75%)

		

		Query: 1   MYEVLVVVYLLVALGLIGLILIQQGKGADMGASFGAGASGTLFGSSGSGNFLTRTTAILA 60

		           MYE L+VV+L+VA+GL+GLI++QQGKGADMGASFGAGAS TLFGSSGSGNF+TR TA+LA

		Sbjct: 1   MYEALLVVFLIVAIGLVGLIMLQQGKGADMGASFGAGASATLFGSSGSGNFMTRMTALLA 60

		

		Query: 61  IAFFTLSLLIGNLSANHAKNEDAWKNLGSDEQVTQPVDQATEKSETKIPD 110

		             FF +SL++GN+++N       W+NL +  +  Q    A  K  + IP+

		Sbjct: 61  TLFFIISLVLGNINSNKTNKGSEWENLSAPAKTEQTQPAAPAKPTSDIPN 110

		

		

		>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family

		           signature.

		          Length = 639

		

		 Score = 69.1 bits (169), Expect = 4e-14

		 Identities = 38/133 (28%), Positives = 57/133 (42%), Gaps = 18/133 (13%)

		

		Query: 392 IMGHVDHGKTSLLDYIRRAKVAAGEAG------------------GITQHIGAYHVETDN 433

		           ++ HVD GKT+L + +     A  E G                  GIT   G    + +N

		Sbjct: 8   VLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWEN 67

		

		Query: 434 GMITFLDTPGHAAFTAMRARGAKATDIVVLVVAADDGVMPQTIEAIQHAKAGNVPLIVAV 493

		             +  +DTPGH  F A   R     D  +L+++A DGV  QT       +   +P I  +

		Sbjct: 68  TKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFI 127

		

		Query: 494 NKMDKPEADIDRV 506

		           NK+D+   D+  V

		Sbjct: 128 NKIDQNGIDLSTV 140

		

		

		>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD

		           chaperone signature.

		          Length = 168

		

		 Score = 29.1 bits (65), Expect = 0.013

		 Identities = 11/75 (14%), Positives = 20/75 (26%), Gaps = 3/75 (4%)

		

		Query: 69  NEQRARFHYDRGVIYDSVGLRLMARIDFMQALKLQPDLADAYNFLGIYYTQEGEYDSAYE 128

		           +   +RF    G    ++G   +A   +     +                Q+GE   A  

		Sbjct: 66  DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAES 125

		

		Query: 129 AFDGVLEL---SPNY 140

		                 EL      +

		Sbjct: 126 GLFLAQELIADKTEF 140

		

		

		>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family

		           signature.

		          Length = 639

		

		 Score =  198 bits (504), Expect = 3e-58

		 Identities = 107/461 (23%), Positives = 210/461 (45%), Gaps = 47/461 (10%)

		

		Query: 10  KRRTFAIISHPDAGKTTITEKVLLFGNALQKAGTV-KGKKSGQHAKSDWMEMEKDRGISI 68

		           K     +++H DAGKTT+TE +L    A+ + G+V KG       ++D   +E+ RGI+I

		Sbjct: 2   KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGT-----TRTDNTLLERQRGITI 56

		

		Query: 69  TTSVMQFPYGGALVNLLDTPGHEDFSEDTYRTLTAVDSCLMVIDSAKGVEDRTIKLMEVT 128

		            T +  F +    VN++DTPGH DF  + YR+L+ +D  +++I +  GV+ +T  L    

		Sbjct: 57  QTGITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHAL 116

		

		Query: 129 RLRDTPIVTFMNKLDRDIRDPIELMDEVEDVLNIACAPITWPIGSGKEFKGVYHILRDEV 188

		           R    P + F+NK+D++  D   +  ++++ L+                     +++ +V

		Sbjct: 117 RKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEI------------------VIKQKV 158

		

		Query: 189 VLYQSGMGHTIQERRVIEGIDNPELDKAIGSYAADLR-DEMELVRGASNEFDHQAFLKGE 247

		            LY +       E    + +     D  +  Y +    + +EL +  S       F    

		Sbjct: 159 ELYPNMCVTNFTESEQWDTVIEGN-DDLLEKYMSGKSLEALELEQEES-----IRFHNCS 212

		

		Query: 248 LTPVFFGTALGNFGVDHILDGIVEWAPKPLPRESDARMIMPDEEKFTGFVFKIQANMDPK 307

		           L PV+ G+A  N G+D++++ I         R          + +  G VFKI+     K

		Sbjct: 213 LFPVYHGSAKNNIGIDNLIEVITNKFYSSTHR---------GQSELCGKVFKIE--YSEK 261

		

		Query: 308 HRDRVAFMRVCSGRYEQGMKMHHVRIGKDVNVSDALTFMAGDRERAEVAYPGDIIGLHNH 367

		            R R+A++R+ SG       +      K + +++  T + G+  + + AY G+I+ L N 

		Sbjct: 262 -RQRLAYIRLYSGVLHLRDSVRISEKEK-IKITEMYTSINGELCKIDKAYSGEIVILQNE 319

		

		Query: 368 GTIRIGDTFTQGEKFRFTGVPNFAPEMFR-RIRLRDPLKQKQLLKGLVQLSEEG-AVQVF 425

		             +++       +             + +  +    P +++ LL  L+++S+    ++ +

		Sbjct: 320 F-LKLNSVLGDTKLLPQRERIENPLPLLQTTVEPSKPQQREMLLDALLEISDSDPLLRYY 378

		

		Query: 426 RPLDTNDLIVGAVGVLQFEVVVGRLKSEYNVEAIYEGISVS 466

		               T+++I+  +G +Q EV    L+ +Y+VE   +  +V 

		Sbjct: 379 VDSATHEIILSFLGKVQMEVTCALLQEKYHVEIEIKEPTVI 419

		

		

		>CHANNELTSX#Nucleoside-specific channel-forming protein Tsx

		           signature.

		          Length = 294

		

		 Score = 81.6 bits (201), Expect = 3e-20

		 Identities = 77/240 (32%), Positives = 109/240 (45%), Gaps = 23/240 (9%)

		

		Query: 60  YLEMEFGGRSGIFDLYGYVDVFNLANESSKDGDKNPGSGTSKLFMKFAPRVSIDALTGKD 119

		           YLE E   +   FD YGY+D       +S    K   +  S LFM+  PR SID LT  D

		Sbjct: 58  YLEYEAFAKKDWFDFYGYIDAPVFFGGNSTA--KGIWNKGSPLFMEIEPRFSIDKLTNTD 115

		

		Query: 120 LSFGPIQEVYFSTLFNWD-GLNGEGVNSTFW-GVGADVNVPWLGKTGMNLYGYYD----- 172

		           LSFGP +E YF+  + +D G N     ST++ G+G D++        +N+Y  Y      

		Sbjct: 116 LSFGPFKEWYFANNYIYDMGRNDSQEQSTWYMGLGTDIDTGLPMSLSLNVYAKYQWQNYG 175

		

		Query: 173 -MNAKEWNGYQFSANWFKPFYFFDNKSFLSFQGYIDYQFGAD------EDKTAFVPKTSN 225

		             N  EW+GY+F   +F P       S LS+ G+ ++ +G+D       D      +TSN

		Sbjct: 176 ASNENEWDGYRFKVKYFVPLTDLWGGS-LSYIGFTNFDWGSDLGDDNFYDLNGKHARTSN 234

		

		Query: 226 --GGNIFFGL---YWHSDRYALGYGLKG-FKDVYLLEDGAGALALESTGWSHYLSATYKF 279

		               +    L   +WH    A  +   G + D   L  G G  ++ STGW  Y    Y F

		Sbjct: 235 SIASSHILALNYAHWHYSIVARYFHNGGQWADDAKLNFGDGPFSVRSTGWGGYFVVGYNF 294

		

		

		>SALSPVBPROT#Salmonella virulence plasmid 65kDa B protein signature.

		          Length = 591

		

		 Score = 43.6 bits (102), Expect = 1e-05

		 Identities = 46/186 (24%), Positives = 71/186 (38%), Gaps = 32/186 (17%)

		

		Query: 295 GQASYHIPIDLPPGRNGVQPSISLSYNSQGGNGILGVGWSLNAGSSISRCGATFAQDGFT 354

		           G AS  +P+ +   R G  P+++L Y+S GGNG  GVGWS    S          Q    

		Sbjct: 34  GLASITLPLPISAER-GFAPALALHYSSGGGNGPFGVGWSCATMSIARSTSHGVPQ---- 88

		

		Query: 355 RAVTFNASTDRLCLDGQRLIVASG--------------------SYGASNAEYRTEMDSF 394

		               +N S + L  DG+ L+                        SY  +  + RTE   F

		Sbjct: 89  ----YNDSDEFLGPDGEVLVQTLSTGDAPNPVTCFAYGDVSFPQSYTVTRYQPRTESS-F 143

		

		Query: 395 VKVVQHGNINDSNSSFTVYKPDGSRATYGANANSRFV-PSGLSTALSWKVTQESYSNGAN 453

		            ++      ++ +  + ++  +G     G  A +R   P   S    W V +ES +    

		Sbjct: 144 YRLEYWVGNSNGDDFWLLHDSNGILHLLGKTAAARLSDPQAASHTAQWLV-EESVTPAGE 202

		

		Query: 454 TIDYQY 459

		            I Y Y

		Sbjct: 203 HIYYSY 208

		

		

		>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase

		           signature.

		          Length = 261

		

		 Score = 51.6 bits (123), Expect = 6e-10

		 Identities = 40/189 (21%), Positives = 75/189 (39%), Gaps = 10/189 (5%)

		

		Query: 12  VLITGASSGIGLQLAKDYLAAGWHVIACGRDKAKLDALAETVLIGA---TCISFDINERS 68

		             ITGA+ GIG  +A+   + G H+ A   +  KL+ +  ++   A        D+ + +

		Sbjct: 11  AFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDSA 70

		

		Query: 69  QVQENALRIKDLLAQCACQLDLVILNAGGCEYIDDAKHFDDRLFERVVHTNLIAMGYCLG 128

		            + E   RI+  +      +D+++ N  G           D  +E     N   +     

		Sbjct: 71  AIDEITARIEREMGP----IDILV-NVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125

		

		Query: 129 AFLPLMP--RGARLALMSSSATYLAFPRAEAYGASKAGVQYLAASLRLDLAQHGISVSVI 186

		           +    M   R   +  + S+   +      AY +SKA        L L+LA++ I  +++

		Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185

		

		Query: 187 CPGFVATPL 195

		            PG   T +

		Sbjct: 186 SPGSTETDM 194

		

		

		>TYPE3IMSPROT#Type III secretion system inner membrane S protein

		          family signature.

		          Length = 354

		

		 Score = 24.3 bits (53), Expect = 0.049

		 Identities = 7/18 (38%), Positives = 14/18 (77%), Gaps = 1/18 (5%)

		

		Query: 53 ERRVRDAREDGRLEPKSR 70

		           +++RDAR+ G++  KS+

		Sbjct: 11 PKKIRDARKKGQV-AKSK 27

		

		

		>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD

		           chaperone signature.

		          Length = 168

		

		 Score = 32.2 bits (73), Expect = 0.001

		 Identities = 29/156 (18%), Positives = 57/156 (36%), Gaps = 11/156 (7%)

		

		Query: 76  PELEDVHVAMAYYYQTVGDLVRTEQAYQDAINTKDASGDSMNNFGVFLCQQKQYDKAEKM 135

		            + ++  +AM  + +  G +                + + + +      Q  +Y+ A K+

		Sbjct: 6   TDTQEYQLAMESFLKGGGTI-------AMLNEISSDTLEQLYSLAFNQYQSGKYEDAHKV 58

		

		Query: 136 FLAAIEMPKYTRTASSYEN-LGICSRDAGQTEKARQYFQMALKYDPRRSVSLLELAELGL 194

		           F A   +  Y    S +   LG C +  GQ + A   +      D +        AE  L

		Sbjct: 59  FQALCVLDHYD---SRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIKEPRFPFHAAECLL 115

		

		Query: 195 DKGDYVDAQNQLARYHQVAAQTPESLTLGIKIEQAL 230

		            KG+  +A++ L    ++ A   E   L  ++   L

		Sbjct: 116 QKGELAEAESGLFLAQELIADKTEFKELSTRVSSML 151

		

		

		>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family

		           signature.

		          Length = 639

		

		 Score = 32.9 bits (75), Expect = 0.003

		 Identities = 38/159 (23%), Positives = 67/159 (42%), Gaps = 35/159 (22%)

		

		Query: 199 IKLAIIGKPNVGKSTLTNRIL----GEERVVVYDEPGTTRDSIYIPMER----------- 243

		           I + ++   + GK+TLT  +L        +   D+  T  D+  +  +R           

		Sbjct: 4   INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSF 63

		

		Query: 244 --DGREYVIIDTAGVRRRSKVHEVIEKFSVIKTLKAVEDANVVLLIIDAREGVAEQDLGL 301

		             +  +  IIDT G      +  + E   V ++L  ++ A   +L+I A++GV  Q   L

		Sbjct: 64  QWENTKVNIIDTPG-----HMDFLAE---VYRSLSVLDGA---ILLISAKDGVQAQTRIL 112

		

		Query: 302 LGFALNAGRALVIAVNKWD--GID-----QGIKDRVKSE 333

		                  G   +  +NK D  GID     Q IK+++ +E

		Sbjct: 113 FHALRKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAE 151

		

		

		>FRAGILYSIN#Fragilysin metallopeptidase (M10C) enterotoxin

		          signature.

		          Length = 405

		

		 Score = 26.6 bits (58), Expect = 0.041

		 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

		

		Query: 1  MKRYLFIVAALLLTGCAAK-DKYVQWEDVPPSSFPKLTAIGYAPLATQ 47

		          +K  L +  A LL  C+ + D      D P ++   L ++ Y  LATQ

		Sbjct: 12 VKLLLMLGTAALLAACSNEADSLTTSIDAPVTASIDLQSVSYTDLATQ 59

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 62.5 bits (152), Expect = 4e-13

		 Identities = 24/128 (18%), Positives = 52/128 (40%), Gaps = 12/128 (9%)

		

		Query: 180 HIMVIDDSAVARKQIIRALESLNLQIDTAKDGREALDKLKTIAAEMNNVAEEIPLIISDI 239

		            I+V DD A  R  + +AL      +    +       +          A +  L+++D+

		Sbjct: 5   TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIA---------AGDGDLVVTDV 55

		

		Query: 240 EMPEMDGYTLTAEIRDDPKLKHIKVVLHTSLSGVFNQAMVQKVGANDFIAK-FNPDELAA 298

		            MP+ + + L   I+       + V++ ++ +         + GA D++ K F+  EL  

		Sbjct: 56  VMPDENAFDLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIG 113

		

		Query: 299 AVNKHLSL 306

		            + + L+ 

		Sbjct: 114 IIGRALAE 121

		

		

		>FLGHOOKAP1#Flagellar hook-associated protein signature.

		          Length = 546

		

		 Score = 33.0 bits (75), Expect = 3e-04

		 Identities = 9/38 (23%), Positives = 18/38 (47%)

		

		Query: 99  NVNVMEEMADMISASRSYQMNVQVAEAAKSMLQQTLGM 136

		            VN+ EE  ++    + Y  N QV + A ++    + +

		Sbjct: 508 GVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545

		

		

		

		 Score = 29.9 bits (67), Expect = 0.003

		 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 6/67 (8%)

		

		Query: 5  SIFDVAGSGMSAQSVRLNTTASNIANADSVSSSIDKTYRSRHPIFEAEMAKAQSQQQASQ 64

		          S+ + A SG++A    LNT ++NI++ +         Y  +  I     +   +      

		Sbjct: 2  SLINNAMSGLNAAQAALNTASNNISSYN------VAGYTRQTTIMAQANSTLGAGGWVGN 55

		

		Query: 65 GVAVKGI 71

		          GV V G+

		Sbjct: 56 GVYVSGV 62

		

		

		>FLGHOOKAP1#Flagellar hook-associated protein signature.

		          Length = 546

		

		 Score = 40.3 bits (94), Expect = 1e-05

		 Identities = 15/35 (42%), Positives = 22/35 (62%)

		

		Query: 2  SFNIALSGISAAQKDLNTTANNIANANTIGFKESR 36

		            N A+SG++AAQ  LNT +NNI++ N  G+    

		Sbjct: 3  LINNAMSGLNAAQAALNTASNNISSYNVAGYTRQT 37

		

		

		

		 Score = 37.6 bits (87), Expect = 8e-05

		 Identities = 12/49 (24%), Positives = 25/49 (51%)

		

		Query: 405 SISSSALEQSNIDLTTELVDLISAQRNFQANSRTLEVNNTLQQTVLQIR 453

		            +S+     S ++L  E  +L   Q+ + AN++ L+  N +   ++ IR

		Sbjct: 498 QLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINIR 546

		

		

		>FLGHOOKAP1#Flagellar hook-associated protein signature.

		          Length = 546

		

		 Score = 44.6 bits (105), Expect = 2e-07

		 Identities = 19/119 (15%), Positives = 41/119 (34%), Gaps = 4/119 (3%)

		

		Query: 145 EDATSITVSAEGEVSVKTPGAAENQVVGQLSMSDFINPSGLDPMGQNLYTETG---ASGT 201

		            D   I +++E +         +  +  Q +          +    +L ++ G   A+  

		Sbjct: 427 TDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSDIGNKTATLK 486

		

		Query: 202 PIQGTASLDGMGAIRQGALETSNVNVTEELVNLIESQRIYEMNSKVISAVDQMLAYVNQ 260

		               T     +  +       S VN+ EE  NL   Q+ Y  N++V+   + +   +  

		Sbjct: 487 TSSATQGNV-VTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALIN 544

		

		

		

		 Score = 35.7 bits (82), Expect = 2e-04

		 Identities = 9/36 (25%), Positives = 20/36 (55%)

		

		Query: 5  LWISKTGLDAQQTDIAVISNNVANASTVGYKKSRAV 40

		          +  + +GL+A Q  +   SNN+++ +  GY +   +

		Sbjct: 4  INNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTI 39

		

		

		>FLGLRINGFLGH#Flagellar L-ring protein signature.

		          Length = 232

		

		 Score =  147 bits (373), Expect = 2e-46

		 Identities = 78/228 (34%), Positives = 113/228 (49%), Gaps = 20/228 (8%)

		

		Query: 4   YFILAVALL-LTACSSTSKKPIADDPFYAPVYPEAPPTKIAATGSIYQDSQAA-----SL 57

		           Y I ++ +L LT C+     P+      A   P   P    A GSI+Q +Q        L

		Sbjct: 9   YAISSLLVLSLTGCAWIPSTPLVQGATSAQPVPGPTP---VANGSIFQSAQPINYGYQPL 65

		

		Query: 58  YSDIRAHKVGDIITIVLKEATQAKKSAGNQIKKGSDMSLDPIYAGGSNVS------IGGV 111

		           + D R   +GD +TIVL+E   A KS+     +    +      G   V        G  

		Sbjct: 66  FEDRRPRNIGDTLTIVLQENVSASKSSSANASRDGKTNF-----GFDTVPRYLQGLFGNA 120

		

		Query: 112 PLDLRYKDSMNTKRESDADQSNSLDGSISANVMQVLNNGNLVVRGEKWISINNGDEFIRV 171

		             D+          +  A+ SN+  G+++  V QVL NGNL V GEK I+IN G EFIR 

		Sbjct: 121 RADVEASGGNTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGEKQIAINQGTEFIRF 180

		

		Query: 172 TGIVRSQDIKPDNTIDSTRMANARIQYSGTGTFADAQKVGWLSQFFMS 219

		           +G+V  + I   NT+ ST++A+ARI+Y G G   +AQ +GWL +FF++

		Sbjct: 181 SGVVNPRTISGSNTVPSTQVADARIEYVGNGYINEAQNMGWLQRFFLN 228

		

		

		>FLGPRINGFLGI#Flagellar P-ring protein signature.

		          Length = 373

		

		 Score =  379 bits (974), Expect = e-133

		 Identities = 161/367 (43%), Positives = 224/367 (61%), Gaps = 14/367 (3%)

		

		Query: 5   LILAVAMLAFSLPSQAE--RIKDIANVQGVRNNQLIGYGLVVGLPGTGEKTR---YTEQT 59

		           L+ +      + P+QA+  RIKDIA++Q  R+NQLIGYGLVVGL GTG+  R   +TEQ+

		Sbjct: 11  LVFSALPFLSTPPAQADTSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDSLRSSPFTEQS 70

		

		Query: 60  FTTMLKNFGINLPDNFRPKIKNVAVVAVHADMPAFIKPGQELDVTVSSLGEAKSLRGGTL 119

		              ML+N GI      +   KN+A V V A++P F  PG  +DVTVSSLG+A SLRGG L

		Sbjct: 71  MRAMLQNLGITTQGG-QSNAKNIAAVMVTANLPPFASPGSRVDVTVSSLGDATSLRGGNL 129

		

		Query: 120 LQTFLKGVDGNVYAIAQGSLVVSGFSADGLDGSKVIQNTPTVGRIPNGAIVERSVATPFS 179

		           + T L G DG +YA+AQG+L+V+GFSA G D + + Q   T  R+PNGAI+ER + + F 

		Sbjct: 130 IMTSLSGADGQIYAVAQGALIVNGFSAQG-DAATLTQGVTTSARVPNGAIIERELPSKFK 188

		

		Query: 180 TGDYLTFNLRRSDFSTAQRMADAINDL----LGPDMARPLDATSVQVSAPRDVSQRVSFL 235

		               L   LR  DFSTA R+AD +N       G  +A P D+  + V  PR V+     +

		Sbjct: 189 DSVNLVLQLRNPDFSTAVRVADVVNAFARARYGDPIAEPRDSQEIAVQKPR-VADLTRLM 247

		

		Query: 236 ATLENIEVEPADESAKVIVNSRTGTIVVGQNVKLLPAAVTHGGLTVTIAEATQVSQPNAL 295

		           A +EN+ VE  D  AKV++N RTGTIV+G +V++   AV++G LTV + E+ QV QP   

		Sbjct: 248 AEIENLTVET-DTPAKVVINERTGTIVIGADVRISRVAVSYGTLTVQVTESPQVIQPAPF 306

		

		Query: 296 ANGQTTVTSNSTINASESNRRMFMFNPGTTLDELVRAVNLVGAAPSDVLAILEALKVAGA 355

		           + GQT V   + I A +   ++ +   G  L  LV  +N +G     ++AIL+ +K AGA

		Sbjct: 307 SRGQTAVQPQTDIMAMQEGSKVAIVE-GPDLRTLVAGLNSIGLKADGIIAILQGIKSAGA 365

		

		Query: 356 LHGELII 362

		           L  EL++

		Sbjct: 366 LQAELVL 372

		

		

		>FLGFLGJ#Flagellar protein FlgJ signature.

		          Length = 313

		

		 Score =  152 bits (386), Expect = 2e-45

		 Identities = 70/168 (41%), Positives = 101/168 (60%), Gaps = 2/168 (1%)

		

		Query: 206 QILPTAAFRETQKTLKFGSREEFLATLYPHAEKAAKALGTQPEVLLAQSALETGWGQKIV 265

		           Q++  A  R    +L   S+  FLA L   A+ A++  G    ++LAQ+ALE+GWGQ+ +

		Sbjct: 131 QLVQKAVPRNYDDSLPGDSKA-FLAQLSLPAQLASQQSGVPHHLILAQAALESGWGQRQI 189

		

		Query: 266 RGNNGAPSHNLFNIKADRRWQGDKANVSTLEFEQGIAVRQKADFRVYADFEHSFNDFVSF 325

		           R  NG PS+NLF +KA   W+G    ++T E+E G A + KA FRVY+ +  + +D+V  

		Sbjct: 190 RRENGEPSYNLFGVKASGNWKGPVTEITTTEYENGEAKKVKAKFRVYSSYLEALSDYVGL 249

		

		Query: 326 IAEGERYQAAKKVAASPTQFIRALQDAGYATDPKYAEKVIKVMQSISE 373

		           +    RY AA   AAS  Q  +ALQDAGYATDP YA K+  ++Q +  

		Sbjct: 250 LTRNPRY-AAVTTAASAEQGAQALQDAGYATDPHYARKLTNMIQQMKS 296

		

		

		

		 Score = 86.3 bits (213), Expect = 4e-21

		 Identities = 39/93 (41%), Positives = 61/93 (65%), Gaps = 3/93 (3%)

		

		Query: 12  DLGGLDSLRAQAQKDEKGALKKVAQQFEGVFVQMLMKSMRDANAVFESDSPLNSQYTKFY 71

		           D   L+ L+A+A +D    ++ VA+Q EG+FVQM++KSMRDA      D   +S++T+ Y

		Sbjct: 14  DAQSLNELKAKAGEDPAANIRPVARQVEGMFVQMMLKSMRDALP---KDGLFSSEHTRLY 70

		

		Query: 72  EQMRDQQLSVDLSDKGVLGLADMMVQQLSPESS 104

		             M DQQ++  ++    LGLA+MMV+Q++PE  

		Sbjct: 71  TSMYDQQIAQQMTAGKGLGLAEMMVKQMTPEQP 103

		

		

		>FLGHOOKAP1#Flagellar hook-associated protein signature.

		          Length = 546

		

		 Score =  215 bits (549), Expect = 3e-64

		 Identities = 125/455 (27%), Positives = 195/455 (42%), Gaps = 19/455 (4%)

		

		Query: 4   DLLNIARTGVLASQSQLGVTSNNIANANTAGYHRQVATQTTLDSQRLGNSFYGTGTYVSD 63

		            L+N A +G+ A+Q+ L   SNNI++ N AGY RQ       +S      + G G YVS 

		Sbjct: 2   SLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVSG 61

		

		Query: 64  VKRIYNDYAARELRIGQTTLSAAEASYGKLSELDQVFSQIGKIVPQSLNDLFSGLNSLAD 123

		           V+R Y+ +   +LR  QT  S   A Y ++S++D + S     +   + D F+ L +L  

		Sbjct: 62  VQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLSTSTSSLATQMQDFFTSLQTLVS 121

		

		Query: 124 LPADLGIRSSTLNDAKQLANSLNQMQSTLNGQLTQTNDQITGMTKRINEISTELANLNLE 183

		              D   R + +  ++ L N        L  Q  Q N  I     +IN  + ++A+LN +

		Sbjct: 122 NAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASLNDQ 181

		

		Query: 184 LMKSPNQDAM-----LLDKQDALVQELSQYAQVNVIPLENGAKSIMLGGAIMLVSGEV-- 236

		           + +     A      LLD++D LV EL+Q   V V   + G  +I +     LV G    

		Sbjct: 182 ISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQGSTAR 241

		

		Query: 237 PMSVSTATGDPFPNELQLMSSIGSQSVRVDPNKLGGQLGALFEYREQTLVPAGLELDQLA 296

		            ++   ++ DP    +  +          +     G LG +  +R Q L      L QLA

		Sbjct: 242 QLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTLGQLA 301

		

		Query: 297 LGVADNFNKLQAQGFDLNGQVGTDIFKDINDPLMSIGRVAGFSGNTGNATLGVNIDDTSA 356

		           L  A+ FN     GFD NG  G D F       +    V   + N G+  +G  + D SA

		Sbjct: 302 LAFAEAFNTQHKAGFDANGDAGEDFFA------IGKPAVLQNTKNKGDVAIGATVTDASA 355

		

		Query: 357 LSGGSYELSF--TAPATYELRDTQTGTITPLTLNGTKLEGGAGFSIDIKAGAMASGDRFA 414

		           +    Y++SF         L    T T+TP        +G          G  A  D F 

		Sbjct: 356 VLATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFT----GTPAVNDSFT 411

		

		Query: 415 IRPTAGAANGIEVVMTDPKGIAAAAPKITPDAANS 449

		           ++P + A   ++V++TD   IA A+ +   D+ N 

		Sbjct: 412 LKPVSDAIVNMDVLITDEAKIAMASEEDAGDSDNR 446

		

		

		

		 Score = 82.7 bits (204), Expect = 1e-18

		 Identities = 55/217 (25%), Positives = 80/217 (36%), Gaps = 20/217 (9%)

		

		Query: 430 TDPKGIAAAAPKITPDAANSGNTQVKVTQITNRSAANFPTTGSELTIQLDTTAVPPTFEA 489

		           T  KG  A    +T  +A                  +F     ++T     T        

		Sbjct: 338 TKNKGDVAIGATVTDASAVLATDY----------KISFDNNQWQVTRLASNT-TFTVTPD 386

		

		Query: 490 FDVNGASLGAPVAYTPPSISAFGFTFEVDSSAAAAGDKFTFDLS---------FAEGDNT 540

		            +   A  G  + +T        FT +  S A    D    D +           + DN 

		Sbjct: 387 ANGKVAFDGLELTFTGTPAVNDSFTLKPVSDAIVNMDVLITDEAKIAMASEEDAGDSDNR 446

		

		Query: 541 NALAMAKLSETKVMNGGKSTLADVFEQTKQDIGSQTKAAEVRVGAADAIYQQAYARVESE 600

		           N  A+  L       GG  +  D +     DIG++T   +        +  Q   + +S 

		Sbjct: 447 NGQALLDLQSNSKTVGGAKSFNDAYASLVSDIGNKTATLKTSSATQGNVVTQLSNQQQSI 506

		

		Query: 601 SGVNLDEEAANLMRFQQAYQASARIMSTAQQIFDTLL 637

		           SGVNLDEE  NL RFQQ Y A+A+++ TA  IFD L+

		Sbjct: 507 SGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALI 543

		

		

		>FLAGELLIN#Flagellin signature.

		          Length = 507

		

		 Score = 50.8 bits (121), Expect = 5e-09

		 Identities = 33/233 (14%), Positives = 83/233 (35%), Gaps = 4/233 (1%)

		

		Query: 20  QTATSKILDQLSSGKKVNTSGDDPVAALGIDNLNQRNALVDQFMKNIDYATNHLQQTESQ 79

		           Q++ S  +++LSSG ++N++ DD       +        + Q  +N +   +  Q TE  

		Sbjct: 21  QSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQASRNANDGISIAQTTEGA 80

		

		Query: 80  LGQADALISSMKDLMLQGSNGSQTSEERQTIADDLRKSLDQLLTIANTKDESGNYLFAGN 139

		           L + +  +  +++L +Q +NG+ +  + ++I D++++ L+++  ++N    +G  + + +

		Sbjct: 81  LNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEIDRVSNQTQFNGVKVLSQD 140

		

		Query: 140 KTETLPFQFDANGKIVYQGDSGVHSAIIASGIQLNTNVAGDTAFIKSPNAMGDYSVNYSS 199

		               +    +    I          ++   G     NV G              +V    

		Sbjct: 141 NQMKIQVGANDGETITIDLQKIDVKSLGLDG----FNVNGPKEATVGDLKSSFKNVTGYD 196

		

		Query: 200 SQQGEFSVTSAKLDGVTPSLSDYQINFLDDGAGGINVEVTDTATPANVISAAA 252

		           +     +     ++              D            T    N  +   

		Sbjct: 197 TYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTDDAENNTAVDL 249

		

		

		>FLAGELLIN#Flagellin signature.

		          Length = 507

		

		 Score =  207 bits (528), Expect = 2e-63

		 Identities = 162/509 (31%), Positives = 228/509 (44%), Gaps = 46/509 (9%)

		

		Query: 2   AITVNTNVTSLKSQKNLNGANSALQTSMERLSSGLRINSAKDDAAGLQISNRLTSQINGL 61

		           A  +NTN  SL +Q NLN + S+L +++ERLSSGLRINSAKDDAAG  I+NR TS I GL

		Sbjct: 1   AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60

		

		Query: 62  DVAQRNANDGISIAQTAEGAMQTSTDILQRMRDLSLQSANGSNSTEDRAAMQKELAALQT 121

		             A RNANDGISIAQT EGA+    + LQR+R+LS+Q+ NG+NS  D  ++Q E+     

		Sbjct: 61  TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120

		

		Query: 122 ELTRIADTTSFGGQKLLDGTYGTQKFQVGANANETISVTLMDVSSNKLGNNTISGAGSVL 181

		           E+ R+++ T F G K+L       K QVGAN  ETI++ L  +    LG +  +  G   

		Sbjct: 121 EIDRVSNQTQFNGVKVLSQD-NQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKE 179

		

		Query: 182 GVAATDTLSNSVAFTAGDIKVNGKTVAVAAADTATSLADKINATGSGVKAEAKLSTTIEG 241

		                   S           V      V     A             V   A        

		Sbjct: 180 ATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTD 239

		

		Query: 242 -------LSSTDTGTLTVYDAEGNADSYDLSTYN---------------------GDAKT 273

		                  +    T   T   AE  A +  +                         G+ K 

		Sbjct: 240 DAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGKV 299

		

		Query: 274 LASDLGKAGYDVSYDADTGKIGFSATGVQGIEISGGVV---------------GGTVSLG 318

		             +  G+       D   G     A  +Q  +     V                    L 

		Sbjct: 300 STTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSDLE 359

		

		Query: 319 GNVADDTNTNVSVASSLTLSSPDKFTVTDDGTADLGEILSGGTSELNKVSDIDINTAEGA 378

		            N A    + ++V  +   ++     VT  G     +  + G S L   ++      +  

		Sbjct: 360 ANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLI--NEDAAAAKKST 417

		

		Query: 379 QDAISVIDAAIAGIDSSRSDLGAVQNRMSFTINNLNNISTNVSDARSRIQDVDFAKETAT 438

		            + ++ ID+A++ +D+ RS LGA+QNR    I NL N  TN++ ARSRI+D D+A E + 

		Sbjct: 418 ANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIEDADYATEVSN 477

		

		Query: 439 MTKQQILSQTSSAMLAQANQIPQVALSLL 467

		           M+K QIL Q  +++LAQANQ+PQ  LSLL

		Sbjct: 478 MSKAQILQQAGTSVLAQANQVPQNVLSLL 506

		

		

		>FLAGELLIN#Flagellin signature.

		          Length = 507

		

		 Score =  211 bits (537), Expect = 1e-64

		 Identities = 163/509 (32%), Positives = 230/509 (45%), Gaps = 46/509 (9%)

		

		Query: 2   AITVNTNVTSLGSQKNLNKANSALQTSMERLSSGLRINSAKDDAAGLQISNRLTSQINGL 61

		           A  +NTN  SL +Q NLNK+ S+L +++ERLSSGLRINSAKDDAAG  I+NR TS I GL

		Sbjct: 1   AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60

		

		Query: 62  DVAQRNANDGISIAQTAEGAMQTSTDILQRMRDLSLQSANGSNSADDRAAMQKEISSLQT 121

		             A RNANDGISIAQT EGA+    + LQR+R+LS+Q+ NG+NS  D  ++Q EI     

		Sbjct: 61  TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120

		

		Query: 122 ELTRIADTTSFGGQKLLDGTYGTQKFQVGSNANETISISLGDVSSNKLGNNTISGAGSVL 181

		           E+ R+++ T F G K+L       K QVG+N  ETI+I L  +    LG +  +  G   

		Sbjct: 121 EIDRVSNQTQFNGVKVLSQD-NQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKE 179

		

		Query: 182 GVAATDTLSNSVAFTAGDIKVNGKTVAVAAADTATSLADKINATGSGVKAEAKLSTTIEG 241

		                   S           V      V     A             V   A        

		Sbjct: 180 ATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTD 239

		

		Query: 242 -------LSSTDTGTLTVYDAEGNADSYDLSTYN---------------------GDAKT 273

		                  +    T   T   AE  A +  +                         G+ K 

		Sbjct: 240 DAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGKV 299

		

		Query: 274 LASDLGKAGYDVSYDADTGKIGFSATGVQGIEISGGVV---------------GGTVSLG 318

		             +  G+       D   G     A  +Q  +     V                    L 

		Sbjct: 300 STTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSDLE 359

		

		Query: 319 GNVADDTNTNVSVASSLTLSSPDKFTVTDDGTADLGEILSGGTSELNKVSDIDINTAKGA 378

		            N A    + ++V  +   ++     VT  G     +  + G S L   ++      K  

		Sbjct: 360 ANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLI--NEDAAAAKKST 417

		

		Query: 379 QDAISVIDAAIAGIDSQRADLGAVQNRMNFTINNLSNISTNVSDARSRVQDVDFAKETAQ 438

		            + ++ ID+A++ +D+ R+ LGA+QNR +  I NL N  TN++ ARSR++D D+A E + 

		Sbjct: 418 ANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIEDADYATEVSN 477

		

		Query: 439 MTKQQILSQTSSAMLAQANQLPQVALSLL 467

		           M+K QIL Q  +++LAQANQ+PQ  LSLL

		Sbjct: 478 MSKAQILQQAGTSVLAQANQVPQNVLSLL 506

		

		

		>TYPE3IMSPROT#Type III secretion system inner membrane S protein

		           family signature.

		          Length = 354

		

		 Score = 53.6 bits (129), Expect = 7e-12

		 Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 3/87 (3%)

		

		Query: 8   TQQAVALSYD-GKH-APKVVASGEGLVADEIIALAKASGVYIHQDPHLSNFL-RLLELGE 64

		           T  A+ + Y  G+   P V           +  +A+  GV I Q   L+  L     +  

		Sbjct: 265 THIAIGILYKRGETPLPLVTFKYTDAQVQTVRKIAEEEGVPILQRIPLARALYWDALVDH 324

		

		Query: 65  EIPKELYLLIAELIAFVYMLDGKFPEQ 91

		            IP E     AE++ ++   + +    

		Sbjct: 325 YIPAEQIEATAEVLRWLERQNIEKQHS 351

		

		

		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.

		          Length = 1541

		

		 Score = 37.7 bits (87), Expect = 2e-04

		 Identities = 32/181 (17%), Positives = 64/181 (35%), Gaps = 12/181 (6%)

		

		Query: 230  LTPQAELLNTSKPSIQAQVAPDNKAAVEVTTSSATDNPTSKNNASALSIQTSLQANTEPK 289

		            + P A    +      A+ +      VE     AT+  T++N   A   +++++ANT+  

		Sbjct: 1025 VPPPAPATPSETTETVAENSKQESKTVEKNEQDATE-TTAQNREVAKEAKSNVKANTQTN 1083

		

		Query: 290  LTTVNQKLIPEIQPQEMAKTQQ-----KAPSLEINLTEAKNVASNTLPTRD--ENIRNTA 342

		                +     E Q  E  +T       KA        E   V S   P ++  E ++  A

		Sbjct: 1084 EVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQA 1143

		

		Query: 343  SAMLP----TNAMKSEAASSSLAKSALSSNELPLNLKPLAAEAQLTEKTNKASESTISVN 398

		                      N  + ++ +++ A +   + E   N++    E+      N   E+  +  

		Sbjct: 1144 EPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTT 1203

		

		Query: 399  E 399

		             

		Sbjct: 1204 P 1204

		

		

		>VACJLIPOPROT#VacJ lipoprotein signature.

		          Length = 251

		

		 Score =  230 bits (588), Expect = 5e-78

		 Identities = 91/257 (35%), Positives = 134/257 (52%), Gaps = 16/257 (6%)

		

		Query: 9   LLGFALLPKVYGAEATVPDTTPKETASAVKITYDDPRDPLEGFNRAMWDFNYLYLDRYIY 68

		           L   AL   +    A+        +            DPLEGFNR M++FN+  LD YI 

		Sbjct: 5   LSALALGTTLLVGCASSGTDQQGRS------------DPLEGFNRTMYNFNFNVLDPYIV 52

		

		Query: 69  RPIAHGYNDYLPLPAKTGINNFVQNLEEPSSLVNNALQGKWGWAANAGGRFTVNTTIGLL 128

		           RP+A  + DY+P PA+ G++NF  NLEEP+ +VN  LQG          RF +NT +G+ 

		Sbjct: 53  RPVAVAWRDYVPQPARNGLSNFTGNLEEPAVMVNYFLQGDPYQGMVHFTRFFLNTILGMG 112

		

		Query: 129 GVFDVADMMGMPRKQDE---FNEVLGYYGVPNGPYFMAPFAGPYVVRELASDWVDGLYFP 185

		           G  DVA M     ++ E   F   LG+YGV  GPY   PF G + +R+   D  D LY  

		Sbjct: 113 GFIDVAGMANPKLQRTEPHRFGSTLGHYGVGYGPYVQLPFYGSFTLRDDGGDMADALYPV 172

		

		Query: 186 LSELTVWQSIVKWGLKSLHARASAIDQERLVDNALDPYTFVKDAYLQHMDYKVYDGNV-P 244

		           LS LT   S+ KW L+ +  RA  +D + L+  + DPY  V++AY Q  D+    G + P

		Sbjct: 173 LSWLTWPMSVGKWTLEGIETRAQLLDSDGLLRQSSDPYIMVREAYFQRHDFIANGGELKP 232

		

		Query: 245 QKQEDDELLDQYMQELE 261

		           Q+  + + +   +++++

		Sbjct: 233 QENPNAQAIQDDLKDID 249

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 94.9 bits (236), Expect = 2e-23

		 Identities = 29/101 (28%), Positives = 47/101 (46%)

		

		Query: 7   SILLVEDDPVFRQIVATFLSGRGAEVVQACDGEQGLSIFKQQRFDIILADLSMPKLGGLD 66

		           +IL+ +DD   R ++   LS  G +V    +             D+++ D+ MP     D

		Sbjct: 5   TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64

		

		Query: 67  MLKEMSKLEPLVPSIVISGNNVMADVVEALRVGACDYLVKP 107

		           +L  + K  P +P +V+S  N     ++A   GA DYL KP

		Sbjct: 65  LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKP 105

		

		

		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

		          Length = 334

		

		 Score = 67.5 bits (165), Expect = 8e-15

		 Identities = 48/223 (21%), Positives = 82/223 (36%), Gaps = 36/223 (16%)

		

		Query: 6   KVLITGGTGSFGKQFIKTILERYPNVKRIVIFSRDELKQS-ELRLKY---PQKDYPQLRF 61

		           K L+TG  G  G    K +LE    V  I     D L    ++ LK         P  +F

		Sbjct: 2   KYLVTGAAGFIGFHVSKRLLEAGHQVVGI-----DNLNDYYDVSLKQARLELLAQPGFQF 56

		

		Query: 62  FIGDVRDRNRMVQ--ACEGIDVIIHAAAIKQVDTAEYNPTECIRTNVDGAENVIHAALQC 119

		              D+ DR  M    A    + +  +     V  +  NP     +N+ G  N++      

		Sbjct: 57  HKIDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHN 116

		

		Query: 120 GVKDVVALST---------------DKACAPINLYGATKLTSDKLFTAANNIKGSRDIRF 164

		            ++ ++  S+               D    P++LY ATK  ++ +    +++ G   +  

		Sbjct: 117 KIQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYG---LPA 173

		

		Query: 165 SVVRYGNVMGSRGS---VIPFFLKKRDEGVLPIT---HEEMTR 201

		           + +R+  V G  G     +  F K   EG   I    + +M R

		Sbjct: 174 TGLRFFTVYGPWGRPDMALFKFTKAMLEGK-SIDVYNYGKMKR 215

		

		

		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

		          Length = 334

		

		 Score =  182 bits (463), Expect = 4e-57

		 Identities = 89/356 (25%), Positives = 146/356 (41%), Gaps = 53/356 (14%)

		

		Query: 1   MRILVTGGSGFIGSALVRLLIQATNCHVLNIDKLTYASHP---DALIGISNHPRYQFVKA 57

		           M+ LVTG +GFIG  + + L++A +  V+ ID L          A + +   P +QF K 

		Sbjct: 1   MKYLVTGAAGFIGFHVSKRLLEAGH-QVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKI 59

		

		Query: 58  DICDGARLDILFEQFKPNIVMHLAAETHVDRSIEGPAAFIQNNILGTFTLLEAARRYWTQ 117

		           D+ D   +  LF       V        V  S+E P A+  +N+ G   +LE  R     

		Sbjct: 60  DLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHN--- 116

		

		Query: 118 LDSLQKLQFRFHHVSTDEVFGSLADTGLFSETSAYD-PSSPYSASKASTDHLVRAWHRTY 176

		              +Q L +     S+  V+G L     FS   + D P S Y+A+K + + +   +   Y

		Sbjct: 117 --KIQHLLY----ASSSSVYG-LNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLY 169

		

		Query: 177 GLPIVITNCSNNYGPFQYPEKLIPLMVNHALQGKSLPIYGNGQQVRDWLYVDDHVKALYL 236

		           GLP         YGP+  P+  +       L+GKS+ +Y  G+  RD+ Y+DD  +A+  

		Sbjct: 170 GLPATGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIR 229

		

		Query: 237 V------------------ATRGQLGQTYNIGGCCERTNLAVVQQICLLLEELVPTHPQS 278

		           +                  A      + YNIG       +  +Q     LE+ +      

		Sbjct: 230 LQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQ----ALEDAL------ 279

		

		Query: 279 LAMKGDGFAALIEHVVDRPGHDIR--YAIDSSKIQHELGWQPLESFESGLRRAVEW 332

		                 G  A    +  +PG D+    A D+  +   +G+ P  + + G++  V W

		Sbjct: 280 ------GIEAKKNMLPLQPG-DVLETSA-DTKALYEVIGFTPETTVKDGVKNFVNW 327

		

		

		>PF06291#Lambda prophage Bor protein

		          Length = 102

		

		 Score = 30.8 bits (69), Expect = 0.001

		 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

		

		Query: 13 QTVKMNMKLSQISLALLALMITACSEPAKTVANEPVAAPHQDTQTN 58

		          Q  KM   L   +LA+L   IT C++   TV N+P A   ++T T+

		Sbjct: 2  QDNKMKKMLFSAALAML---ITGCAQQTFTVGNKPTAVTPKETITH 44

		

		

		>PF06580#Sensor histidine kinase

		          Length = 349

		

		 Score = 47.6 bits (113), Expect = 5e-08

		 Identities = 35/198 (17%), Positives = 74/198 (37%), Gaps = 38/198 (19%)

		

		Query: 266 NTMQDGLGLIERNLSRAAELV--------HNFKRTAADQSVLERERFNLKTYIFQIFSSL 317

		           N + +   LI  + ++A E++        ++ + + A Q  L  E   + +Y+  + S  

		Sbjct: 177 NALNNIRALILEDPTKAREMLTSLSELMRYSLRYSNARQVSLADELTVVDSYLQ-LAS-- 233

		

		Query: 318 RPLMR-KKNIALNVELDDDIFIESYPGAIAQIFTNLVANSFRHGFPESFTGDKIITIRVQ 376

		              ++ +  +    +++  I     P  + Q    LV N  +HG  +   G   I ++  

		Sbjct: 234 ---IQFEDRLQFENQINPAIMDVQVPPMLVQT---LVENGIKHGIAQLPQG-GKILLKGT 286

		

		Query: 377 KQDSNICMQYQDNGVGMTDEVKLKAFEPFFTTARKDGGTGLGMSIIYNLVTQKLHG---T 433

		           K +  + ++ ++ G       K                TG G+  +   + Q L+G    

		Sbjct: 287 KDNGTVTLEVENTGSLALKNTK--------------ESTGTGLQNVRERL-QMLYGTEAQ 331

		

		Query: 434 IMLTSSPYQGVKVEIQIP 451

		           I L+      V   + IP

		Sbjct: 332 IKLSEKQ-GKVNAMVLIP 348

		

		

		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.

		          Length = 1541

		

		 Score = 49.7 bits (118), Expect = 4e-08

		 Identities = 32/191 (16%), Positives = 66/191 (34%), Gaps = 17/191 (8%)

		

		Query: 482  QQQGQNQQQGDQQSSQNDQAQDQSQEQQSQQQNNSDQADKKPSQEQSTSSEQNDPEQGAQ 541

		                 N  Q D  S  ++  +      +  +      A   PS+   T +E +  E    

		Sbjct: 996  NITTPNNIQADVPSVPSNNEE----IARVDEAPVPPPAPATPSETTETVAENSKQESKTV 1051

		

		Query: 542  DKQQASDENAKQDQQDAQQEQQQAEQQANQQNGADNNAEDKEDPASNEAKMQAKVE-DDK 600

		            +K +          ++  +E +   +   Q N    +  + ++  + E K  A VE ++K

		Sbjct: 1052 EKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEK 1111

		

		Query: 601  SKAKQEQQQAVAQKADKEK-----------QAQADKKPDTAVESVEA-PPSNSEPLPAEM 648

		            +K + E+ Q V +   +             QA+  ++ D  V   E    +N+     + 

		Sbjct: 1112 AKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQP 1171

		

		Query: 649  QRALRGVSEDP 659

		             +      E P

		Sbjct: 1172 AKETSSNVEQP 1182

		

		

		

		 Score = 47.0 bits (111), Expect = 2e-07

		 Identities = 38/224 (16%), Positives = 84/224 (37%), Gaps = 15/224 (6%)

		

		Query: 430  AALDKQPEFPQAKANLELAEKLLNQQQSQQNADNQDKQSQGDQNQQGQDQNDQQQGQNQQ 489

		            A +D+ P  P A A           + S+Q +   +K  Q       Q++   ++ ++  

		Sbjct: 1018 ARVDEAPVPPPAPA-TPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNV 1076

		

		Query: 490  QGDQQSSQNDQAQDQSQEQQSQQQNNSDQADKKPSQEQSTSSEQNDPEQGAQDKQQASDE 549

		            + + Q+++  Q+  +++E Q+ +   +   +K+   +  T   Q  P+  +Q   +    

		Sbjct: 1077 KANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQS 1136

		

		Query: 550  NAKQDQQDAQQE--------QQQAEQ--QANQQNGADNNAEDKEDPASNEAKMQAKVEDD 599

		               Q Q +  +E        + Q++    A+ +  A   + + E P +        V   

		Sbjct: 1137 ETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTE----STTVNTG 1192

		

		Query: 600  KSKAKQEQQQAVAQKADKEKQAQADKKPDTAVESVEAPPSNSEP 643

		             S  +  +    A          ++K  +    SV + P N EP

		Sbjct: 1193 NSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEP 1236

		

		

		

		 Score = 40.4 bits (94), Expect = 2e-05

		 Identities = 25/198 (12%), Positives = 63/198 (31%), Gaps = 7/198 (3%)

		

		Query: 488  QQQGDQQSSQNDQAQDQSQEQQSQQQNNSDQADKKPSQEQSTSSEQNDPEQGAQDKQQAS 547

		            + +   Q+         +  Q       S+  +     E               +  +  

		Sbjct: 984  EVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPS---ETTETV 1040

		

		Query: 548  DENAKQDQQDAQQEQQQAEQQANQQNGADNNAEDKEDPASNEAKMQAKVEDDKSKAKQEQ 607

		             EN+KQ+ +  ++ +Q A +   Q       A+     A+ +    A+   +  + +  +

		Sbjct: 1041 AENSKQESKTVEKNEQDATETTAQNREVAKEAK-SNVKANTQTNEVAQSGSETKETQTTE 1099

		

		Query: 608  QQAVAQKADKEKQ-AQADKKPDTAVESVEAPPSNSEPLPAEMQRALRGVSEDPQVLLRNK 666

		             +  A    +EK   + +K  +    + +  P   +       +A      DP V ++  

		Sbjct: 1100 TKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQS-ETVQPQAEPARENDPTVNIKEP 1158

		

		Query: 667  MQLEYQKRRQNGQISRDN 684

		             Q +        Q +++ 

		Sbjct: 1159 -QSQTNTTADTEQPAKET 1175

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 33.7 bits (77), Expect = 8e-04

		 Identities = 35/139 (25%), Positives = 53/139 (38%), Gaps = 19/139 (13%)

		

		Query: 28  LIALIANG--HLLVEGPPGLAKT---RAVKALCDGVEGDFHRIQ---FTPDLLPADLTG- 78

		           ++A +      L++ G  G  K    RA+        G F  I       DL+ ++L G 

		Sbjct: 152 VLARLMQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGH 211

		

		Query: 79  -----TDIYRSQTGTFEFEAGPIFHNLILADEINRAPAKVQSALLEAMAEGQVT-VGKNS 132

		                T      TG FE   G      +  DEI   P   Q+ LL  + +G+ T VG  +

		Sbjct: 212 EKGAFTGAQTRSTGRFEQAEG----GTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRT 267

		

		Query: 133 YKLPPLFLVMATQNPLENE 151

		                + +V AT   L+  

		Sbjct: 268 PIRSDVRIVAATNKDLKQS 286

		

		

		>DNABINDINGHU#Prokaryotic integration host factor signature.

		          Length = 91

		

		 Score = 89.0 bits (221), Expect = 4e-27

		 Identities = 36/88 (40%), Positives = 52/88 (59%)

		

		Query: 2  NKAQLIQRIATSLEQSQASTKPVVEQILQQIHIALSEGEKVFLPQFGTFELRFHLPKSGR 61

		          NK  LI ++A + E ++  +   V+ +   +   L++GEKV L  FG FE+R    + GR

		Sbjct: 3  NKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGR 62

		

		Query: 62 NPQTGETIEIAGFNQPSFKAATALKKAI 89

		          NPQTGE I+I     P+FKA  ALK A+

		Sbjct: 63 NPQTGEEIKIKASKVPAFKAGKALKDAV 90

		

		

		>SUBTILISIN#Subtilisin serine protease family (S8) signature.

		          Length = 326

		

		 Score =  114 bits (286), Expect = 7e-30

		 Identities = 69/289 (23%), Positives = 120/289 (41%), Gaps = 61/289 (21%)

		

		Query: 258 SSYVVDDNGNPVPNEYKVCVHGHGTAVGGTIASIRGNGVGVSSVLGSNNAELVYVKVLDS 317

		            ++  DD G+P   +     +GHGT V GTIA+   N  GV  V  +  A+L+ +KVL+ 

		Sbjct: 67  RNFTDDDEGDPEIFKDY---NGHGTHVAGTIAA-TENENGVVGV--APEADLLIIKVLNK 120

		

		Query: 318 CNDGAFLSDIIKGIHWSVGDHFDGVTDISSPVDVINLSLGGMGNGGLCDVGFNAMADAVA 377

		              G     II+GI++++             VD+I++SLGG             + +AV 

		Sbjct: 121 QGSGQ-YDWIIQGIYYAIEQK----------VDIISMSLGG-------PEDVPELHEAVK 162

		

		Query: 378 YANSKGAVVVASTGNSALEA----TAATPVSCHGIITAAANTSNGELAPFSNYYNSRKNI 433

		            A +   +V+ + GN             P   + +I+  A   +   + FSN  N   ++

		Sbjct: 163 KAVASQILVMCAAGNEGDGDDRTDELGYPGCYNEVISVGAINFDRHASEFSNSNNE-VDL 221

		

		Query: 434 SAIGQDLLTPFVNTSVYVSRNGVGGVEGDCNKITNCYAYYTGTSLSAPVISSAVALIKME 493

		            A G+D+L+                           YA ++GTS++ P ++ A+ALIK  

		Sbjct: 222 VAPGEDILSTV---------------------PGGKYATFSGTSMATPHVAGALALIKQL 260

		

		Query: 494 NPS-----LKAEQIFDILYNTA------SEYNTNEVGNKTALYKLSKNT 531

		             +     L   +++  L           +   N +   TA+ +LS+  

		Sbjct: 261 ANASFERDLTEPELYAQLIKRTIPLGNSPKMEGNGLLYLTAVEELSRIF 309

		

		

		>YERSSTKINASE#Yersinia serine/threonine protein kinase signature.

		          Length = 732

		

		 Score = 32.0 bits (72), Expect = 0.012

		 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

		

		Query: 182 QVLDGIIHSHANQVLHRDIKPDNILVDD-EGRVHVIDFGISKLMGEQ 227

		           ++LD   H     V+H DIKP N++ D   G   VID G+    GEQ

		Sbjct: 253 RLLDVTNHLAKAGVVHNDIKPGNVVFDRASGEPVVIDLGLHSRSGEQ 299

		

		

		>PF06580#Sensor histidine kinase

		          Length = 349

		

		 Score = 36.8 bits (85), Expect = 2e-04

		 Identities = 20/102 (19%), Positives = 34/102 (33%), Gaps = 23/102 (22%)

		

		Query: 356 LMENAFRLCISQ------VEVSARFNEQGDFELIVEDDGPGVEENLRQKIIQRGVRADTQ 409

		           L+EN  +  I+Q      + +     + G   L VE+ G    +N ++            

		Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTK-DNGTVTLEVENTGSLALKNTKE------------ 309

		

		Query: 410 SPGQGIGLA-VCDEIVSSYGGYLSIE-ESHLEGARFRITIPA 449

		               G GL  V + +   YG    I+           + IP 

		Sbjct: 310 --STGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLIPG 349

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 78.7 bits (194), Expect = 4e-19

		 Identities = 32/124 (25%), Positives = 59/124 (47%), Gaps = 1/124 (0%)

		

		Query: 1   MSIMRILVVEDDLILSHHLKVQLSDLGNQVQVALTAKEGFFQATNYPIDVAIVDLGLPDQ 60

		           M+   ILV +DD  +   L   LS  G  V++   A   +        D+ + D+ +PD+

		Sbjct: 1   MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60

		

		Query: 61  DGISLIQQLREEGVKAPILILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLD-ALV 119

		           +   L+ ++++     P+L+++A+  +   ++    GA DYL KPF   EL+  +  AL 

		Sbjct: 61  NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120

		

		Query: 120 RRSA 123

		               

		Sbjct: 121 EPKR 124